LOCUS       DARBAR010000001        45486 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.001, whole genome shotgun sequence.
ACCESSION   DARBAR010000001 DARBAR010000000
VERSION     DARBAR010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 45486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 45486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..45486
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.001"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..189
                     /locus_tag="SB815_000001"
     CDS             <1..189
                     /locus_tag="SB815_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HEG0905786.1"
                     /translation="GALEKVFEEFFADHIAMVELLEKQGLTEMDVKNFILENGDFIEE
                     RQNDIYIELGAKILGHEG"
     gene            192..728
                     /locus_tag="SB815_000002"
     CDS             192..728
                     /locus_tag="SB815_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HEG0905787.1"
                     /translation="MFKISPYLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            742..1635
                     /locus_tag="SB815_000003"
     CDS             742..1635
                     /locus_tag="SB815_000003"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HEG0905788.1"
                     /translation="MQKIDELIKQFLQELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            1635..2933
                     /locus_tag="SB815_000004"
     CDS             1635..2933
                     /locus_tag="SB815_000004"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEG0905789.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKGEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLIEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            2917..4626
                     /locus_tag="SB815_000005"
     CDS             2917..4626
                     /locus_tag="SB815_000005"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEG0905790.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEVKAQNTCSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVIGKGLENNEIELIQREGLVKELIKTDELMEILKK
                     KVL"
     gene            4623..5012
                     /locus_tag="SB815_000006"
     CDS             4623..5012
                     /locus_tag="SB815_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HEG0905791.1"
                     /translation="MNYKLSLSPLFVLEIIASVLFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLIFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            5009..5932
                     /gene="hemC"
                     /locus_tag="SB815_000007"
     CDS             5009..5932
                     /gene="hemC"
                     /locus_tag="SB815_000007"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEG0905792.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLEIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            5929..7731
                     /locus_tag="SB815_000008"
     CDS             5929..7731
                     /locus_tag="SB815_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEG0905793.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNKKALNLAFGRDYKEVAEEISKLIKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLIHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFVPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KYFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            7889..8254
                     /gene="flaG"
                     /locus_tag="SB815_000009"
     CDS             7889..8254
                     /gene="flaG"
                     /locus_tag="SB815_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HEG0905794.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDGQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            8257..10185
                     /gene="fliD"
                     /locus_tag="SB815_000010"
     CDS             8257..10185
                     /gene="fliD"
                     /locus_tag="SB815_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HEG0905795.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDGGFVNAQLNGTADLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDSNGKYQKDINA
                     EKIFDDLGWGLDVSASIDPDKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGGNTNGL
                     EFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVE
                     SYNQNNVTGFRLNFSGDGSSDFSIKGDANILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLNTVTNMINAANNSNN"
     gene            10197..10583
                     /gene="fliS"
                     /locus_tag="SB815_000011"
     CDS             10197..10583
                     /gene="fliS"
                     /locus_tag="SB815_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HEG0905796.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            10564..10839
                     /locus_tag="SB815_000012"
     CDS             10564..10839
                     /locus_tag="SB815_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905797.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLAKESPSED
                     FLKENANDVFYQVQALLQEAVILIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(10837..11157)
                     /gene="rnpB"
                     /locus_tag="SB815_000013"
     ncRNA           complement(10837..11157)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="SB815_000013"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            11271..11840
                     /gene="efp"
                     /locus_tag="SB815_000014"
     CDS             11271..11840
                     /gene="efp"
                     /locus_tag="SB815_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEG0905798.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            12000..12692
                     /locus_tag="SB815_000015"
     CDS             12000..12692
                     /locus_tag="SB815_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HEG0905799.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            12679..13632
                     /locus_tag="SB815_000016"
     CDS             12679..13632
                     /locus_tag="SB815_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HEG0905800.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            13642..14646
                     /locus_tag="SB815_000017"
     CDS             13642..14646
                     /locus_tag="SB815_000017"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HEG0905801.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLALDVDIL
                     "
     gene            14765..16057
                     /locus_tag="SB815_000018"
     CDS             14765..16057
                     /locus_tag="SB815_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEG0905802.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFITSQSGIIF
                     RGLMENSGIEANEAFANSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVISKPDPFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLIMICGVGMLISIAVEAGAIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            16068..16865
                     /locus_tag="SB815_000019"
     CDS             16068..16865
                     /locus_tag="SB815_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG0905803.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GVLVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFPLSNFV
                     FGSDWPHTNFEANINFSSALVAFNEVVVSKKEQEQILGDNACALFGF"
     gene            complement(16862..17947)
                     /locus_tag="SB815_000020"
     CDS             complement(16862..17947)
                     /locus_tag="SB815_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEG0905804.1"
                     /translation="MNKIEILKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPSTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHDIELILLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADKLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(17944..19176)
                     /locus_tag="SB815_000021"
     CDS             complement(17944..19176)
                     /locus_tag="SB815_000021"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEG0905805.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLSIQ
                     KMSIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLKIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            19247..20182
                     /locus_tag="SB815_000022"
     CDS             19247..20182
                     /locus_tag="SB815_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEG0905806.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            20363..21691
                     /locus_tag="SB815_000023"
     CDS             20363..21691
                     /locus_tag="SB815_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG0905807.1"
                     /translation="MSSIFSTLSPFRLFVKYAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMTKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDYIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAIGDAMQPALSYNYAKKDFSRIKAIVKVVFFAGGFLSLFSIVLILIFG
                     ENLITLFTKENNQEFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFFLLFLSCFMGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
     gene            complement(21739..22668)
                     /locus_tag="SB815_000024"
     CDS             complement(21739..22668)
                     /locus_tag="SB815_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 domain-containing protein"
                     /protein_id="HEG0905808.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSHNADNSDSSFIPFIGAELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYVIGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEFELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIVLTGIGYKF"
     gene            22822..24198
                     /locus_tag="SB815_000025"
     CDS             22822..24198
                     /locus_tag="SB815_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEG0905809.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKILRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            24261..24863
                     /locus_tag="SB815_000026"
     CDS             24261..24863
                     /locus_tag="SB815_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905810.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGSIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDVINTEEYKLKRELEIEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKIEFLLSSYKDQMIKVIDYAKKFKCLSAFLETQSEKNDLAVVKM
                     ISESMERKTQRFYLQTKFQTFPQYIFPSVWSSPMWDKQWE"
     gene            24854..25060
                     /locus_tag="SB815_000027"
     CDS             24854..25060
                     /locus_tag="SB815_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905811.1"
                     /translation="MGIILGILSLIAGFVAIVLMCGLYFIAFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
     gene            25139..25204
                     /locus_tag="SB815_000028"
     CDS             25139..25204
                     /locus_tag="SB815_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001862547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3944 domain-containing protein"
                     /protein_id="HEG0905812.1"
                     /translation="MAYRYDKDLEFLKELSSPELD"
     gene            25366..25866
                     /locus_tag="SB815_000029"
     CDS             25366..25866
                     /locus_tag="SB815_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001964913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905813.1"
                     /translation="MSRWWSLYNEILRDVAKKFDVKFDENESTNSIETSLLCKLIEEE
                     LKNSQDENTLRELVNIFELGISNINKQTVVMGLQSLIKIGGFKSYQIAVIVANQVMKV
                     LLGRGLSLAANATLTRALSLFSGPVGWTIMTTWTALDLASPAYRVTIPAVLQIIILRL
                     KHNTKN"
     gene            25885..26381
                     /locus_tag="SB815_000030"
                     /pseudo
     CDS             25885..26381
                     /locus_tag="SB815_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108589.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            26886..27350
                     /locus_tag="SB815_000031"
     CDS             26886..27350
                     /locus_tag="SB815_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905814.1"
                     /translation="MSVSIMELLGFGELIKLPLIDSSKKYHNKNKQQLRLFIIQEILK
                     ENQKTITQIIDIINNLIEQCNTNTQNLQELIKLLKLASKNNETFKEREKLLYCPETLS
                     LITINNHLKEDDIQFIEQYYTYNQNTHEYERNDNLSSSDLEKLSNFFKLKNL"
     gene            27675..27956
                     /locus_tag="SB815_000032"
     CDS             27675..27956
                     /locus_tag="SB815_000032"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905815.1"
                     /translation="MITYSNLSDVKKRIEDEFTHRNAECDKYDYLIAITCGAIAGIMD
                     IFLVGNPKDSYLGKKVDKTVEKMTQKFAQLCGWDKQKALDKNKDLTKSV"
     gene            27962..28831
                     /locus_tag="SB815_000033"
     CDS             27962..28831
                     /locus_tag="SB815_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905816.1"
                     /translation="MENKFKINYDQTTTNGRNGTNGKVDNLSMKNHHLKSIGHSPDIF
                     GLFVSIVNQFTNTSTFVSNGKIITIDTNTFELQGGNFIAKIFCGFFNWFGHLASDWCG
                     SSGGKERGAGIPMPFYNLFLLCDFGNFGQHRQTLAQIATQVFEQGYDLRHGVTMSIPV
                     MINKMLIRFMYIIKAKFYHKKEWKECIPKDDIPELNKMLLIGSGTFLLIDTGGAWIKS
                     KNPITNPVVFLSEINLINVIRFSTLILKEIYILYNNGKIDNKKLEKYLDDTCKILLIE
                     AHNKSKPFKEILK"
     gene            28840..29907
                     /locus_tag="SB815_000034"
     CDS             28840..29907
                     /locus_tag="SB815_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0905817.1"
                     /translation="MNHLLILYNPYYQEDVIKQHLSILQEKSQVAFGKIKSKLNDQEK
                     QNSLEEIYQSTNEENFLQLFLSDYANLFVAKVVKISKNVDESLIPSYYKEKNLEVEDF
                     FIISDLRELVREDFSRLRDKFLANFITPNDHTYAIYGNHYTYPLPVRLKEECSYFLGD
                     EKHYLSVYKSKEYLAMQENFIRFVFGKRIFYLLHSDSISNIIHAELELLQSENDLLND
                     FTSIIVKYSKTLEYEIYAFAKKVLLKACMKDPSLYDLAYNVQGKSFILKDFFTQKPNL
                     GSIKFLLRHENIQCHLGKSLTQFINYPFSKSLTIIQEIRNEAVHAKAPSLNEVKKLRN
                     EILGIEGVSLLKRILTHKEIS"
     gene            29904..30776
                     /locus_tag="SB815_000035"
     CDS             29904..30776
                     /locus_tag="SB815_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HEG0905818.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLTFMPIKKENGRYVLESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKEKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKLRTKNENFIPNEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNYQIIDKDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKIR
                     LEDILKSYLNNLSK"
     gene            complement(30798..30873)
                     /locus_tag="SB815_000036"
     tRNA            complement(30798..30873)
                     /locus_tag="SB815_000036"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(30838..30840),aa:Met,seq:cat)
     gene            complement(30907..30981)
                     /locus_tag="SB815_000037"
     tRNA            complement(30907..30981)
                     /locus_tag="SB815_000037"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(30947..30949),aa:Gln,seq:ttg)
     gene            31074..32093
                     /locus_tag="SB815_000038"
     CDS             31074..32093
                     /locus_tag="SB815_000038"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HEG0905819.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            32105..32548
                     /locus_tag="SB815_000039"
     CDS             32105..32548
                     /locus_tag="SB815_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEG0905820.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDVIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            32566..34266
                     /locus_tag="SB815_000040"
     CDS             32566..34266
                     /locus_tag="SB815_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEG0905821.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKAINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISNKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            34263..34727
                     /gene="ilvN"
                     /locus_tag="SB815_000041"
     CDS             34263..34727
                     /gene="ilvN"
                     /locus_tag="SB815_000041"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEG0905822.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            34724..35689
                     /gene="lpxD"
                     /locus_tag="SB815_000042"
     CDS             34724..35689
                     /gene="lpxD"
                     /locus_tag="SB815_000042"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEG0905823.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVVLEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(35678..36706)
                     /gene="queA"
                     /locus_tag="SB815_000043"
     CDS             complement(35678..36706)
                     /gene="queA"
                     /locus_tag="SB815_000043"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEG0905824.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLQDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHNPLFLAQIK
                     GRIKKDEILYFKEDLKVRVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYTRTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(36699..37436)
                     /gene="tatC"
                     /locus_tag="SB815_000044"
     CDS             complement(36699..37436)
                     /gene="tatC"
                     /locus_tag="SB815_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEG0905825.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFAFGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            complement(37429..37845)
                     /gene="tatB"
                     /locus_tag="SB815_000045"
     CDS             complement(37429..37845)
                     /gene="tatB"
                     /locus_tag="SB815_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HEG0905826.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKNGKINV"
     gene            complement(37903..38970)
                     /locus_tag="SB815_000046"
     CDS             complement(37903..38970)
                     /locus_tag="SB815_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG0905827.1"
                     /translation="MHFYIHIPFCESKCNYCAFTSLKKNDYEKAYFKALKEDIVFQLK
                     QFNIQSNQIKTLFIGGGTPSCVNAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWL
                     KNMKNLGVNRISFGVQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDLIYDT
                     KLDNKKMLEFELLHLKQIKDLITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQ
                     LLELDFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKN
                     YIENPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYK
                     NKRYFNPNFLISDELALYLSS"
     gene            39072..39542
                     /locus_tag="SB815_000047"
     CDS             39072..39542
                     /locus_tag="SB815_000047"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HEG0905828.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIARRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGATININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVRVIKYFEEKGYI"
     gene            39544..40746
                     /locus_tag="SB815_000048"
     CDS             39544..40746
                     /locus_tag="SB815_000048"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEG0905829.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGCPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNIEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            40747..41283
                     /locus_tag="SB815_000049"
     CDS             40747..41283
                     /locus_tag="SB815_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HEG0905830.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKATRPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            41289..41888
                     /locus_tag="SB815_000050"
     CDS             41289..41888
                     /locus_tag="SB815_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEG0905831.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFIPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
     gene            41890..43032
                     /gene="folP"
                     /locus_tag="SB815_000051"
     CDS             41890..43032
                     /gene="folP"
                     /locus_tag="SB815_000051"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEG0905832.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNALLMASKEQIQKLVVKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYGAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            43033..44976
                     /gene="ligA"
                     /locus_tag="SB815_000052"
     CDS             43033..44976
                     /gene="ligA"
                     /locus_tag="SB815_000052"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEG0905833.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWYKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCIDESAFNELVKE"
     gene            44957..>45486
                     /locus_tag="SB815_000053"
     CDS             44957..>45486
                     /locus_tag="SB815_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905834.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLISIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRVSMGDFYLYIFSFFLAIFGLVSLFLNFLNLEKID
                     FVFIFIILPLLMIFLKKELHLQFVDNAYNDFRIVVIASFFTALFYAFYGLFFTYNELL
                     NLELFSRKIIAYKSAS"
BASE COUNT        16235 a         5705 c         8099 g        15447 t
ORIGIN      
        1 ggagccttag aaaaagtttt tgaggaattt tttgctgatc atattgctat ggtggaactt
       61 ttggaaaaac aaggtctaac agaaatggat gtaaaaaatt tcatattaga aaatggtgat
      121 ttcatagaag aaaggcaaaa tgatatttat atagaattgg gcgcaaaaat tttaggacac
      181 gaaggctaaa attgtttaaa ataagcccct atttaatttg tatttttttt atttttagta
      241 atgttttagc atctgaacca acttttgatt atacttataa atttatactt aaaaaagatg
      301 agagagctag tgtgcagatt aaagaaatag gctatgaaga taaggtgcaa aattttgatt
      361 tttattggac tttgtttgat aatactaata tcatcgtaca ttcgaaattt cgcaaatatc
      421 cgcgtcaatt tgtgatgagt ttaagaagaa atttagattg ggtaactcaa actttaatac
      481 ctgactatac taatccacat attgatagag caagacttat tttagaattt agtggttata
      541 ataaaggttt ggcaactttt acggtttata tagaagataa ggaatctcgc ttaatggtag
      601 aatttttaga tccgagaaaa aaagctttac aaaatccacc gcaaaataat caggttgttc
      661 ctatgattaa ttttaacgaa cctcaggtaa aaccattaac aagcaaagaa aataataata
      721 gcaattaaca aggaaaagat agtgcaaaaa atagatgaat taataaaaca gtttttacaa
      781 gagcttggct atgaacctat tttaaatatg ctttcaaatg taaaatcagg aaagaaatta
      841 cgctctaaat tattattagc tatcgcagat gagagtgaga ttgcttttaa aatttgtgcg
      901 gctatagaat tgatacatct tgctagttta ttacatgatg atattatcga tgagagtgaa
      961 ttaaggcgtg gagcaagatc tgttaatgct gaatttggta caaaaaatgc tcttatgttg
     1021 ggcgatattt tgtattcaaa agccttttat gaattaagca aaatggatgc tagatttgca
     1081 agtattattt cagatgctgt tgtaaagctt gctataggcg aacttatgga tgttgatttg
     1141 ggagagaaat ttaatatcaa taaagaagct tatttgaaaa tgatctataa taaaacagct
     1201 gttttgattg aagcaagtgc tagatgcgga gctattttgg ctggattata tgaaaaagat
     1261 tttgcagaat atggtaaaaa tttaggactt gcttttcaga tgattgatga tattttagat
     1321 attaagagtg atgaaaaaat tcttggaaaa cctgctatga atgattttaa agagggtaaa
     1381 actaccttgc cttatattta tctttatgaa aatttacaag aacaagatag gatatatttg
     1441 cagactttat ttaaaaaaga tttaaatgaa aatgaaaaag aatggctaaa aactaaattt
     1501 gaagaacaaa aagctttaga aaaagctatt ttagaagcta aaacttatgc aaaaaaggct
     1561 agaaaagcaa ttgaaaaata tgataataac aagcttaatg atattattaa agctatgata
     1621 gatagggaat tttaatgtat tattgtatat cttttactca taaaaataca gatattgcct
     1681 taagggaaaa gttaagcttt tccaatgaag ctaaaaaagg tgagttttta aaaatcatta
     1741 gcactcatga aaatattgaa gaatgtttgg ttataagcac ttgcaatcgt gttgaaattg
     1801 ttgcttttgt aaaaatggcc tgtgcggagt ttattgttaa atctttggct ttactttgtg
     1861 atgttgataa agatatttta cttgaaaaag ctgatatttt tgaagatagt ggagcaatcc
     1921 accatctttt ttctgtagca agttctttgg atagtttggt ggttggagaa actcagatag
     1981 caggacaatt aaaagatgcc tttgcttttg ctgtaaaaaa taatttttgt ggagtacacc
     2041 tttcaagagc agtacatagt gcttttaaat gtgctgctaa ggtacgcaat gaaactcaaa
     2101 tttctaaaaa ttctatttct gtagctagcg ttgccgtggc aaaagcaaaa gaacttgcag
     2161 atttaacgca aaaaaaagct gttgttattg gagctggaga gatgggagaa cttgcggcaa
     2221 aacatttaat tgctgcgggt gctaaggtga ttattttaaa tcgtgattta caaaaagcta
     2281 aagatttgtg tgagagactt ggtgttttaa gcgaatatga tagtttagaa aatttaaaaa
     2341 aatatttaaa tcaatacgag ttttttttct cagctaccaa tgcaccaaat gctattatta
     2401 caaattcttt aatagaagaa ctttcttata aaaggtattt ttttgatatt gcagttccaa
     2461 gggatattga tatcaatgaa aatgaaaata tatctgtttt tgctgtagat gatcttgaaa
     2521 ttgtggttca aaaaaattta gcactaagag aacaagaagc tcgtatggct tatgggataa
     2581 taggtcgtga aacaagtgaa ttttttaggt atttaaacga tttggctttg atgcctatta
     2641 tcaaagctat acgcttgcaa gctaaagaat atgcagataa acaacttgaa attgcgttaa
     2701 aaaaaggata tttgaaaaaa tctgataaag aagaggctag aaagttgatt catcaagttt
     2761 ttaaggcttt tttacacacg cctactgtaa atttgaaaca tttacaaggt aaaatgcaaa
     2821 gcgatacagt gattaatgct atgcgttatg tttttgattt gcaaaataat cttgaaggtt
     2881 taaatcaata taaatgtgaa tttgatatgg agaataatga tgagatttac taaattttat
     2941 gcaccaagtt taaaagaagc gccaaaagat gcgagtttac ctagtcatat ttttttaacg
     3001 cgtgcgggtt ttgtagaaca aattggtagc ggactttata atttcttgcc tttgggaaaa
     3061 agagttttag acaagattaa aaatatagtt aaagaagaaa tggataaggc tggagcacaa
     3121 gaagtaaatc ttagttttat cactcctgca agtttgtggc aagaaagtgg gcgttacaat
     3181 gtttttggaa aagaactttt gcgttttaaa gacagaaaag aaaatgaatt tgttttaggt
     3241 ccaacacatg aagaagctat gctttctttg gtaaaaaaca aaatcacaag ctataaacaa
     3301 cttcctttgc atttatatca aattggactt aaatttcgtg atgaagcaag gcctagattt
     3361 gggcttttaa gatgtcgtga atttctaatg aaagatggat atagttttca tgctaatgaa
     3421 gaagatttag ggcgtgagtt tgagcttatg tataaaactt attctcaaat tttacaaaga
     3481 atggggcttg attttagagc agttgaagct gatagtgggg ctattggtgg aagtggctct
     3541 aaggaattta tggttttagc aaaaaatggg gaagatgata ttttaatttg tgaaaattgt
     3601 gattatgcgg ctaatgttga agctgcaaaa agagctaaaa aaacttgtca agatgagcgt
     3661 cctgaagcaa attatgcaag taaatttcac actccaaata ttaaaactat agattcttta
     3721 gcacaatttt ttaaaatcaa tgctttttat acgattaaag cagtggtaaa aaaagctatt
     3781 tatgaaaatg aaagcaaatt agttgtgttt tttataagag gaagtgatga tttgcaagag
     3841 gttaaggctc aaaatacttg cagtgccctt gaactagtcg atgcgagcga agaagaattg
     3901 gaaaaagctg gcttagtagc tggttttata ggttttgtgg gattaaaaga tatagatttt
     3961 tatatagatt ttgagcttga aaacgaaaag caaatgatta tgggtgcgaa tgaaaaagat
     4021 tatcatttaa tcggtattga tgttgtaaat ttaaataaag atcgttttaa agatttgatt
     4081 gaagttaaag aaggggattg ctgtgttaaa tgtggagcaa aattaaaaca aagtaaaggt
     4141 atagaagtag ggcatatttt taagctagga caaaaatatt ccaaagcgat gaatgcaaat
     4201 ttcttagatg aaaatggcaa aagccagcct ttttatatgg gatgttacgg cataggtgtt
     4261 tcacgcttgt tggctgtagc tattgaagca aatcatgatg aaaaaggatg tatttggaat
     4321 aaaactttag ctccttttgt gcttgaaatt attgtttcaa atctcaaaga tgaaaaggct
     4381 ttagaatttg ctaataagct ttatagggat ttaactaatc ttggattaga agtattgctt
     4441 gatgatagaa atgagcgttt tggggttaaa atgaatgatt ttgaacttat gggctttcct
     4501 tatgcgttag ttattggtaa aggattagaa aataatgaaa tagagcttat ccaaagagaa
     4561 ggtttggtaa aagaacttat aaaaactgat gaacttatgg aaattcttaa aaagaaagtg
     4621 ttatgaatta taaattaagt ttaagccctt tatttgtact tgaaattatt gcaagtgtac
     4681 tttttatagt tttttttggt tttggtaatt ttttattttt catacttttg agtatgattt
     4741 ttggtgcggt tttattggga attttttgga aaaatatgct tgaatttcaa atgggtggct
     4801 taaaggatat gttaacacaa ttttcttttg ttatcgcagg gtttttgctt atttttccag
     4861 ggattattac aagtgttttt ggaatttttg tatttttctt tggtattgct ttgaaattaa
     4921 taactaaatc aaaatatcaa tacaccaagc aagagtatca aaattctaat gaagaaatta
     4981 ttgatgttga aattatagag gatagaaaat gaagcttatt attgcaacaa gaaaaagtca
     5041 attagctctt tggcaaagtg aacatgtagc ccaaatttta aaaaatacac atcaaattga
     5101 agtgctttta gaaggtttta aaacaaaagg cgatgttttg cttgattctc ctttggcaaa
     5161 aattggtggt aaaggacttt ttacaaaaga acttgaagaa agtatgttaa gaaaagaagc
     5221 acatttagca gtgcatagtt taaaagatgt gcctagtttt tttcctcaag gtttagtttt
     5281 ggcagcggta agcaaaagag agcaaagcaa tgatgctatg ctaagtcaaa attataaaga
     5341 ttttctttct ttaccaaaag gtgcaaaaat aggcactact agtcttagac gcaagatgca
     5401 gcttttatta ttaagacctg atttagagat tatttctttg cgtggtaatg tcaattctcg
     5461 tatagagaaa ttaaaaaata atgattttga tgcgattatt ttggcaatgg cgggaattaa
     5521 acgcttaaac ttagataagc aagtgaattt tgtttatgaa tttagcaaag atgagcttat
     5581 tcctgcggct tctcaaggag ctttaggtat agaaagcata aatgatgaaa aaattttaga
     5641 acttttaaaa tgtttaaatg atgaaaatgc tttgattgaa acaagcattg aaagagaatt
     5701 tattgctact ttagaaggag gttgtcaagt tcctataggt attaacgcag aactcttagg
     5761 agatgaaatt tgtgtgcgtg cggtacttgg actacccgat ggaagtgaaa ttttaaaaga
     5821 taagagaatg attaaaaaga atgattttaa aggttttgga gagagtttgg ctaaggagtt
     5881 tattgctaaa ggtgctaaag aacttttaaa aaaagctgag agtatgatat gaaagaattt
     5941 attcaaattt taaaagaaaa tgatctttta agggtaattg aagaacctgt agatgtagat
     6001 cttgaaatcg ctcatttagc ctatatagaa gctaaaaaag gagaaaaagg gaaggcttta
     6061 ttatttaaaa atcctataga taaaaaatta aataaacaat ataaatttcc tgttttgatg
     6121 aatacttttt gcaataaaaa ggctttaaat ttagcttttg gacgtgatta taaagaggtg
     6181 gctgaagaaa tttcaaaact catcaagctt catattccta cgagttttaa agcaaaaatg
     6241 gattttttta tgaatttgtt aagttttaaa aatattcctc ctaaaagact gaaaaaaaat
     6301 aaagccttgt atgattatga aattttaaac tcacttgaag aacttcccat actaaaaact
     6361 tgggaagatg atgcgggtaa atttattacc atggggcaag tttatacaca aaatttagat
     6421 aaaactcaaa ataatcttgg aatgtatcgt ttgcaaatga gtgataaaaa tgaactttta
     6481 atacattggc aaattcataa agatggggca aatttttatc acgaatacaa aaatgctggt
     6541 tttaaaaaaa tgcctgtaag tatagccata ggtggagatc cgctttatat ttggtgttct
     6601 caagcacctt tacctaaggg aatttttgaa cttttacttt atggttttat taaaaaaact
     6661 cctgcaaaaa ttactccttg tgaaaatggt atttttgtac cttatgatag tgatgtggtt
     6721 attgaaggtt atgtggattt agaagagttt aaaatcgaag gtccttttgg agatcatacg
     6781 ggtttttaca ctcctgctga actttttcct gtgatgaaag tagaaaaaat ttatgctaaa
     6841 aaagatgcga tctatcaagc aacggttgta ggaaagcctc ctttagaaga taagatcatg
     6901 gggcttggta ctgaaagaat ttttttaccc ttgcttcaaa cttcagtacc tgatttaatt
     6961 gattataata tgcctgaaaa tggggtcttt cataatctta tcttagcaaa aatcgatgca
     7021 aaatatcccg ctcatgcgca acaaattatg catgcatttt ggggagtagg gcaaatgagt
     7081 tttgttaagc atgcaatttt tgtggataaa aatgcacctt ctttgaaaga ttatgatgct
     7141 ttaattcctt atatgttaga tcgttttaat acaaagaaaa ttttaatttc agaaggaatt
     7201 tgtgatcaat tagatcatgc ttcacctaat tcttgttttg ggggtaaagc aggacttgat
     7261 gcttgtgaag aaatacaagt tgaagagctt gaaattttag aagatgaaaa attactagaa
     7321 ctttttaaaa ctaaggtaga acttttaaat ttaaagcaat tttataaaga aagtaaaagt
     7381 cctatagttt gtattttgct tgataaaaaa gaaaaaatcg aacaaagttt tgacaaactt
     7441 ttagaattta aaaaatattt taggatttta gtgtttttag atgctgaaaa taagcttgaa
     7501 aattcttata tgcttgtttg gcgtgtggta aataatatag atgctaaaag agatattttt
     7561 atcaaagaag aaagacttgg agtagatgca agtgctaaag gtgaagctga gggttattta
     7621 agagcttggc ctaagcaaac agattgcact aaaagcgtga tagaagattt gatcttgcgt
     7681 aatattttag aaaataatcc agatcttttt aataaatttg aaatttttta agataattga
     7741 gatttatttt aaaattttgg cacagttttt gcttattatt ttttttatta ttgaaaaata
     7801 aaattttctt tataagtgtt cataaattta taaatttgtc gatataagct tttaactagc
     7861 aataggaaat tttaaaaagg attttaaaat ggaaatatcg aaggcaaatg ggcaaatgga
     7921 tacagctttg gcaaacatta gccaaagaac aagtgagaca caggctagtt taaacattca
     7981 aaccgataga agtcaaggtc aagaaggcga tgatggacag caacgaggtg tgagtgaaaa
     8041 gttggctgat attacaaaaa agttaaatga gcaaatggat tctctagata ccaatgttcg
     8101 ttttggttat agtgataaaa tcggttctat gtatattagc gtgactgaaa aaagcactgg
     8161 aagggaaatc cgtcaaattc ctagtgaaga agctatgaga ttagctgagt attttaggga
     8221 tgtgatagga atgatatttg ataaggagag ttaaaaatgg catttggtag tctatctagt
     8281 ttaggatttg gttctggggt tttaactcaa gatactatag ataaattaaa agaagcagag
     8341 caaaaagctc gtattgatcc ttatactaaa aaaattgaag aaaatacaac caaacaaaaa
     8401 gatttaacag aaatcaaaac taaattacta agttttcaga cggctgtttc atcattagcc
     8461 gatgctacgg tttttgcgaa aagaaaagtt gtaggaagta ttagcgataa tcctccagca
     8521 agtcttacgg ttaattcggg tgttgcttta caaagcatga atatcaatgt tactcaactt
     8581 gcacaaaaag atgtgtatca aagtaaagga ttagcaaatg acggtggttt tgttaatgca
     8641 caattaaatg gaactgccga tcttactttt ttttcaaatg gcaaagaata tactgttacg
     8701 gtagataaaa acacaaccta tagagattta gctgataaaa ttaatgaagc tagtggagga
     8761 gagattgttg ctaagattgt aaacacagga gagaaaggca ctccttaccg cttaacttta
     8821 accagcaaag aaacaggcga agacagtgcg ataagtttct atgcgggaaa aaaagattcg
     8881 aatggtaaat atcaaaaaga tataaatgca gaaaaaatat tcgacgatct tggatgggga
     8941 ttagatgtat cggcttctat tgatccagat aaggataaaa aaggttatgg cattaaggat
     9001 gcttctttgc atatccaaac tgcgcaaaat gcagaattta cacttgatgg tattaagatg
     9061 tttagatcaa gtaatactgt taccgatctt ggtgtaggaa tgactttaac tttaaataaa
     9121 acaggtgaaa ttaattttga tgtacagcaa gattttgaag gtgtgacaaa agccatgcaa
     9181 gatttggtgg atgcttataa tgatttagta accaatctta atgctgcaac tgactataat
     9241 agtgaaactg gaacaaaagg aactttacaa ggcatcagtg aagtaaattc aatacgctca
     9301 agcattcttg ctgatttgtt tgattctcaa gttgttgatg gaactactga agatgcaaat
     9361 ggtaataaag taaacactaa ggttatgctt tctatgcagg attttggctt aagtttaaat
     9421 gatgcaggca ctttgagttt tgattcttct aaatttgaac aaaaagttaa agaagatcca
     9481 gactctactg aaagtttttt ttcaaatatt actaaatacg aagacattaa tcacacagga
     9541 gaggtaatta agacaggaag tttaagtaaa tatcttaatt ccaatggagg taatactaat
     9601 ggtttagaat ttaaaccagg agattttact atagttttta ataatcaaac atatgatttg
     9661 tctaaaaatt ctgatggtac taattttaaa ttaacaggga aaacagagga agaattgctt
     9721 caaaatttag ctaatcatat aaacagtaaa ggtattgaag gcttaaaagt taaggttgaa
     9781 tcctataatc aaaacaatgt tacagggttt aggttgaatt ttagtggaga tggtagctcg
     9841 gatttttcaa tcaaaggaga tgctaacatt ctcaaggaat taggtttgtc tgacgtaaat
     9901 ataacctcta agcctataga aggtaaaggt attttttcaa aattaaaagc cacgttgcaa
     9961 gagatgactg gaaaagatgg ttcaattaca aaatatgatg agagtttgac aaatgatatt
    10021 aaatcattaa atacctctaa agactcgact caggctatga ttgatacaag atatgataca
    10081 atggcgaatc aatggttgca atatgagagt attttaaata aactcaatca acagctaaat
    10141 actgtgacta atatgattaa tgcggcaaac aattctaata attaaggata aaaaagatgc
    10201 aaaataattt agcctataat gcttattctc aaaatcaagt ggggatagag tccccgcaaa
    10261 aacttattga aatgctttat gagggaattt tgcgtttttg tgcaagagct aaagtagcca
    10321 taagaaatga agatatagaa caaagagtgt attttgtaaa aagaaccacg gctattttta
    10381 tagagcttat taatacttta aactatgaaa aaggcggaga agtggcacat tatttaagcg
    10441 ggctttatac aagagaaatt caacttttat ctttggcaaa tttagaaaat aacgaagata
    10501 gaatcaatga agttataaat gtaaccaaag gtttgctaga agcttggaga gaagtgcata
    10561 acaatgaaac agtggctcag tgattttaaa cttgcattaa tccaagaaga tgtcaataaa
    10621 cttgaaaatt tacttgatga acttgatatg aaagctttta ttaaaaattt agccaaagaa
    10681 tcgccttcag aagatttttt aaaagaaaat gcaaatgatg tattttatca agttcaagct
    10741 cttttgcaag aagctgttat actgattgaa caaaagaaaa aaacaaaagc tgttgaaatt
    10801 caaaaatttc aaaaagcgtt gacatatttt aaatcttaaa aaagcatagc gataagccga
    10861 gttctgtctt gaatgctcat ttatctagtt ttgtttttgc aaacaaaatc aagcgaaggg
    10921 ttaaaacaaa gacgctaacc atcccttctt gctgcacatt gggtttacat agccgaaatt
    10981 gttaccaaaa tcgctggtgg gcttttaccc cgccgtttca ccttttccac ttgcgtggta
    11041 gttttctttc tgttgcacta tcccttaggt taccctagcc atctgttaga tggaatgttt
    11101 gtctttagca gctcggactt tcctctccta aaaagaagcg agcatttact atgctttaaa
    11161 tttggatttt aacgtaattt tacttatttt ttcatcaaat aaaataattt tattgtgata
    11221 tcaatcaaaa tttgataaaa ttgtttttta ttttttaaca aaggaaattt atggcatctt
    11281 attcaatggg tgatttaaaa aagggactta aaatagaaat cgatggaatt ccttttaaaa
    11341 tagttgagta tcagcatgta aaaccaggca aaggtcctgc ttttgtgcgt attaaaatca
    11401 aatcttttat tgatggtaaa gtacttgaaa aaactttcca tgcaggtgat aaatgtgaag
    11461 ctccaaattt agaagataaa actatgcagt atctttatga tgatggtgaa aattgccaat
    11521 ttatggatac gcaaacatat gaacaagtag ctattagtga tgatgatgta ggtgaggcga
    11581 aaaaatggat gcttgatggt atgatggtag atgtgctttt ccataatggt aaagctatcg
    11641 gcgtagaagt tccacaagtt gttgaactca aaatcatcga aacagctcca aattttaagg
    11701 gtgatactca aggatcaaat aaaaaaccgg ctacattgga aacaggcgca gtagtgcaaa
    11761 ttccttttca tgtgttagaa ggtgaagtta tacgcgttga tactgtgcgt ggtgagtata
    11821 tagaaagagc gaacaaataa tacaaaaaaa gcttttggac tattccaagg cttttttaaa
    11881 tttatataaa atttattttg ttacttaatt tctcattcca ttcttaaaaa tattttttta
    11941 aacttttctt caatttaaaa tttctataat atttctaatt catattgtgg agatggttga
    12001 tggaatggtt acttcttgct tctatacctt tgattgtttt aggttttgct ttaaagatta
    12061 accccttttt agtggtaact tcagttggaa tttatgctgg acttgtttca ggttttgatt
    12121 ttgttaaggt tgttagtgat ataggaaaat cttttgtaga taatcgctat gttgctataa
    12181 tttggcttat tttaccttta cttgctgttt tggaacgcaa aggcttaaga gagcaggcta
    12241 aaaatttaat atccaaaata aaagttgcca gtacaggacg aattttaatg tgttattttg
    12301 tttttagaca agttactgca gctttagggc ttttatcttt aggcggacat gcacagatga
    12361 taagaccttt aatagcccct atggcagaag ctgcagctaa gcttaaattt aaaaacttaa
    12421 cacataaaga tagtcaaaaa atcaaagctt tttctgcggg aacggataat gttgctgtat
    12481 tttttggaga ggatattttt atagccgtgc attctatttt atttattaaa gctttttatg
    12541 agagcaatgg tattattgtt gagccattgc atttatcagt ttgggctata ccaactggaa
    12601 ttttggcttt aattatccat tgctctagac tttatttatt tgataaaaga ttggaaaaaa
    12661 cttataaagg gttgagtgat gataagtctt gatttacttt attatattgt aggaatttta
    12721 tttttagttt ttggaatttt aagtttttct aatcaagcta aagatataaa atcaagaata
    12781 agcggcgggg tattttggat aagttatagt tttacttttt tactagcagg agttttgcct
    12841 cattttgtga tgggttgtat agtgatttta ctagcactta tagcaggatt taatttatta
    12901 aaaccagcaa agatcgaagt tagcaaagaa gaaaaagaat atgagataaa acatgcaaat
    12961 atttataaaa ataaactttt tattcctgct ttaatggttc ctttgattac acttattggg
    13021 acttttttat ttccctattt gagttttttt gaaaataaaa atgctacatt gatggctttg
    13081 attataggta taattatttc ttcagtagtt gcttgtttta tgtttaaggc ttctcctaaa
    13141 agagctgtta aagatgcagc acatactatg gatcacatta gttgggcagc gcttttaccg
    13201 caaattttgg ctacacttgg ggtagttttt gtttctacag gaatgggcga tcaagtatct
    13261 aaacttttat ctagttatat tagtttagat aatgctttta ttgcagtagc tgtgtattgt
    13321 atcgctatgg cgctttttac tatagtaatg ggcaatgctt ttgcagcttt tcctgtgatt
    13381 actgctgcta ttgctttgcc gattttaatc atacaaatgc atgcaaatcc tgctattata
    13441 ggagcgattg gaatgcttag tggattttgc ggaactttaa tgacgcctat ggctgcaaat
    13501 tttaatatag ttcctgcggc acttttaaat ttggatgata aaaatggcgt aattaaagcc
    13561 cagtttatgt caggacttgt tttgcttgtg gctaatatct ttttaatgta ttttttagct
    13621 tttagatttt aaggagaaac aatggaaaaa tttataaaac aatttagctt tattgcacta
    13681 gaaaatattt ttagagaatt gccaaataaa attacacatt cttttaatga tatcaatgat
    13741 attaaaccgc caaaacttat gtatcctata ttttatggtt cttatgattg gcattctagc
    13801 gtgcattctc actggctttt ggtgaaaatt ttaaaagatt tttctcattt tgctccaaag
    13861 gatgaaatca tcaaagctct agattctcaa tttagcaaag aaaaagcaga aggagagctt
    13921 aaatatcttc aaaaccctgc acacaaaggt tttgaaagac cttatggatg gggatggttt
    13981 ttaaaactga ctttggagat aaatttactt gctaaagaaa atgacaaagc tgaaatttgg
    14041 gctaaaaatt tagaaggcat agctgatttc tttgttaaag aatttaagga gtttttacct
    14101 aagatggatt atcctatacg agttggaacc cattttaata gctcttttgc tttgtatttt
    14161 gctttagaat atgcaagatt taaaaaagat caagaattgg agtattgcat catccaaagt
    14221 gctaaaaagt ggtttttaaa tgataaaaat atgcaagctt tagagccttg tggagatgag
    14281 tttttatctc ctgttttgat ggaagcggtg cttttaagtg ctgttttaca taaaaatgat
    14341 tttgtaaaat tttttaaagc atatttgcca aatttagaag caaaagagcc tgcaacttta
    14401 tttacccctg tgagtgtgag tgataggagc gatggtaaaa tagcacattt agatgggtta
    14461 aatttaagtc gtgcttggtg ttttaaaata ctttcaaatt tttgcgatga aaatttaaaa
    14521 attcttttaa gaaacaatgc tacagagcat tttgataaag ctatagctca tatagaagat
    14581 gattatcttg ggtcgcattg gctaggaagc tttgctttgc ttgctctgga tgtggatatt
    14641 ttataaaaaa tttcataaga tgagtaaatt tgttgctaaa tagatatttt ttaaatttag
    14701 attttgtttt tatgctttga aaaatatatt ttttgatatt ataagcccta taatatttta
    14761 aaggatgata atggtttttt taatcatctc tagtattata gtggctatta ttttgggcta
    14821 tattactaga cataatgttg gaatttttgc tatgattttt gcttatatta taggagcttt
    14881 ttttatggat ttagctccta aaaaaatcat agctttttgg cctatttcta tattttttgt
    14941 tatttttgct gtctcattgt tttataattt tgcaaccgta aatggaactc ttgaaaaatt
    15001 agctggacat ttgatgtatc gttttgctaa tcatccttat ttgcttcctt ttgttatttt
    15061 tgtggttagt gctattatag ctgctttagg agcaggtttt tatacagttt tagcttttat
    15121 ggcaccactt acttttttac tttgcgataa aatcggttta agcaaaattg ctggagctat
    15181 ggctataaat tatggtgctt tgggaggagc aaattttata acttctcaaa gcgggattat
    15241 ttttcgagga ttgatggaaa attcaggcat tgaagcaaat gaagcttttg caaattctag
    15301 tattattttt gcttttacta taatcttgcc tattgtggta ttatcttttt ttgtgtttaa
    15361 tgcttttaaa aataatataa aaattagtgt tatttcaaaa cctgatccat ttgattataa
    15421 acaaaaaact actttaattc tcatgtttat gatgattgtt gttgttttaa tctttcctgt
    15481 gctaaatatt atttttccac ataatgagac aattagttat tttaataaaa aaatagatat
    15541 agccatgata gccatgattt ttgttgccat tgctttattt ttaaaattgg ccgatgagaa
    15601 acaagttgtt gctttaattc cttggggaac cttgataatg atttgtggag tagggatgtt
    15661 aattagcata gcagttgaag caggggctat aaaattattt tcagatcttg tagaaaatga
    15721 gatcaatgtg atttttattc cgttaataat gtgtgctatt gcagctttta tgtcgctttt
    15781 ttcaagtact ttgggtgtgg ttactccagc gctttttcct atagttccaa gcattgctgc
    15841 aagcagtgga ttaagcgagg cattgctttt ttcttgtatt gttgtagggg ctcaagcttc
    15901 tgctatttct cctttttctt ctggaggaag tctaatttta ggatcttgcc ctgataaata
    15961 taaggaaaaa ttatttaaag atttacttat taaagctgtg cctataggat ttatagcggc
    16021 gattttagct actattataa tgagttttat tttataagga taatttaatg aagattgata
    16081 ctcacgcaca tatatttttg aaaaagttaa atacggttgc aaatgcaaga tataagcctg
    16141 attatgacgc tagttttaaa gattataaag caaatttaga tcattatgat tttaataaag
    16201 gggttttagt tcagccaagt tttttaggta ttgataatga atttttgctt cagagtatag
    16261 aaaaagatga aaatataaaa gctatagttg tggttgatga aaatattaaa tttgatgagc
    16321 ttaaaaaact aaaagaaaga aaagcttgtg gagttagatt aaatttaatt ggcaaagaat
    16381 taccaaattt taaaagtatg gtttggactc aattttttga aaatttaagt aagcttaaaa
    16441 tgcaaataga aattcaaaga gatttagata ataatcttgt tgatattgtt gaaaatttaa
    16501 ttccttatgg ttgtaatatt gttatcgatc atttagcaag agctaatgca aacttaacaa
    16561 atttagagga tttaatttgc ttaaaaaact ctagaatatt ttttaaaatt agcggttttt
    16621 atagagcaaa aatagactat gctaataatg aacaagctgt aaaatttgca aagaaaatat
    16681 atgaaatttt aaaagaacat tttccactta gcaattttgt ttttggaagc gattggccac
    16741 atacaaattt tgaagcaaat attaattttt catcggctct agtggctttt aatgaagttg
    16801 tcgtatctaa aaaagaacaa gagcaaattt taggggataa tgcttgtgct ttatttggct
    16861 tttaagcttt ttgttttatc ctaaagatgt attttgcaat gcgttcaaaa tgcactctta
    16921 gataaggttt gtaaatcaca aaaccaccta aaagccctaa aatgcttcct attacaacat
    16981 caattaaacg agcgagtatt aatttatctg cattttcact cataaaatta gctgcttccg
    17041 aaagataagt agcataagga gtaaagaaaa tcatagctaa agcatagttt cgattgacta
    17101 aaaattgtcc tataaaaaac aaagacatca taagtaaaat aagctctata tcgtgaaatt
    17161 gtttagataa aagccaccat gcaaaacata ctcctaaggc cgttcctatg atgcgttgaa
    17221 tttgtttaat ccatatagaa tttaaagtta caccttgcat aatagctgtg caagaaatgg
    17281 ctatccaata acttctttca agttctaaaa aagttcctat aaatatagaa aaagccacaa
    17341 aagaacccat gatcaaagaa tccacaaaaa ctgcatcaaa acctatgtat tctctaggtg
    17401 gaatttcgct aggtaaagca tttttaaatc cataaatcac aacgatagaa tataacaaag
    17461 ccattaaatt agctaccatt gctccaagaa aaacaagacc tactaaaaag ataaaatcct
    17521 tagcttcaaa aggagaatag gctcctaaaa cacaagaaaa tacaaagaaa aaatatccag
    17581 gtgcaccaat gttatagtat ctaattaaaa tagaacttcc catggccata attcctatag
    17641 ggatgaaggc aaaaattgca ggcaaaaaat gagttaaaat tcctaagaaa aaactagaaa
    17701 ctatgccaaa agaacagcac atcacaacag ccattctatg atataaagga gtgcttggaa
    17761 catataaaaa agacaaagct cctatcatgg caatgagtcc atagtttaat tttccaaaaa
    17821 atacactaag ccctaaaact atacctacgc ctaaagccgc aaaaaaaggc atttgccaaa
    17881 cttgttcgct tgaatttaat ttagcaattt ctttaaagtg ttgctttagt atttctattt
    17941 tattcactct cgaatttgtc cttccccatt gattatatat ttataagtgc aaatatcttc
    18001 aatccccata ggacctcttg catgcaattt gctggttgaa attccaactt ctccaccaaa
    18061 gccaaattct cctccatcgc taaaacgcgt tgaagcatta gcataaatac aagatgagtt
    18121 tataaggcgt tgaaatttag cgatatttga agcatcattt gagataatgg tttcagaatg
    18181 caaggagctg tgtttattga tatgctctat agcttcatcg caatctttta ctaattttac
    18241 acttaaagca aaatcaagcc attctgtatc aaaggtattt tcatttgctt taaaaatttt
    18301 taaatttgag ttgttaaaat aagccaaagc attttcatgg gcgtgaattt ttaccttaaa
    18361 tttttcaaat tcaggtatta aaagacttat aaaattttta gcaatttttt catggattaa
    18421 aagcgtttct aaagcgttac aaacacttac tctttgacac tttgcattaa ggattatttt
    18481 taaagccata tctaagttag cactttgatc tacaaaagca tgacacaagc ctttattttg
    18541 cttaatgaga ggaattttgg tattgtttgc aatttcttgt atcatatttg aacttccgcg
    18601 aggtatgatc acatcgatta aatcatcaaa ggctagaatt tgcaagattt catctctttg
    18661 ggtaaacata gcaaaacaat cttgcaaatc aaattcctta agtactttat taacaagagt
    18721 aaatatagcc tcatttgtaa attttgcttc acttccgcct ttaaatacac aagcattgga
    18781 actttttatc attaaagctg cgatttcagc gctaagacta ggccttgctt cgtaaataac
    18841 acaaatgagt cctaaaggaa tactcatctt ttgtatgctc aaacccgcat aatttttcca
    18901 gcctttagaa attttgccta taggatcttc gatgtaagcg attttttcta ggccttcgca
    18961 aagagctaaa atacgttttt catctaacaa aagcctatct ttcattgctc cgctttttgt
    19021 gaaatttgcc atatcttttt tatttgcttc taggataatt ttgaaatttt ctcttaaaat
    19081 ttgagctaat tttagaataa ttttttcttt atctttgggt gttaagttaa gtagtttttg
    19141 agaatttttc ttaatatttt caagcaaatt tcgcattttt aatcctttat ttacaaaaaa
    19201 cttgataaat tatacaaaaa aatttagaat tgaaaggtaa atataaatga aaaaaataga
    19261 tttaattgta gtaggtgcag gtccaacagg gataggctgt gcagttgaag ccaagcttaa
    19321 aaacaaagaa gttttgatac tagaaaaatc aaataacatt tgtcaaactt taatgcaatt
    19381 ttataaggat ggcaaaagag tagataaagc ttataaggga tgcgaaggaa ccaatcacgg
    19441 acatgttcct tttgaagatg gcaccaaaga aagcactata gaaacttttc aaaacgcttt
    19501 aaaagagcac aatatagaag ttgaatttgg ttctgaagtt gagagcgtta aaaatgaaaa
    19561 tggagttttt ttagtaagta cagctaaagg tgtttatgag tgtaaaaaca ttattgttgc
    19621 tataggtaga atgggtaaac ctaataaacc tgattacaaa cttcctatga ctttaacaaa
    19681 aatcattaat tttaatgcca attcagtttt gggaaatgaa aaaattcttg ttgtaggtgg
    19741 cggaaattca gcagcagaat acgctgtgga tttggcaaat tcaaatcaag ttagcctttg
    19801 ttatcgtaaa aaagaattta caagattaaa tgatataaat cttaaagata ttcacgaagc
    19861 tggaaattcg ggtaaggtag agttaaaact aggaattgac attaatgaag tagaagatga
    19921 taatggcaaa gctaaagtaa attttaccga tggtacaagc gatatttatg atagaatcat
    19981 ttatgctatt ggtggttcta ctccacttga ttttttacaa aaatgtggga ttaatgttga
    20041 tgataaaggc gtgcctttaa tggatgaaaa caaacaaagc aatgttaaag gcatctttgt
    20101 agcaggagat attgctacta aaaatggagc aagtatagtt acagggttaa atgacgctgt
    20161 gaaaattctt tctgtgcttt aaaatttagc ctttgggcta aatttttatt ttagtttaat
    20221 ctagaaaatt catatgcaaa ataaaataaa tattaataaa cttattgcga aattacttta
    20281 tttaaattct tacatactag gacttttggc attttattag cggtttaaaa tatttttaat
    20341 tttaaatatt ttaaggatta ttatgtcaag tatttttagc accttaagcc cttttaggct
    20401 ttttgtaaaa tatgccgtgc caaatgttat aagcatggct tttatttctt tttattatat
    20461 agttgatgga atttttgttg gaaaatatct aggaagtgat gctttagcgg cactagcctt
    20521 gattattccc tttatcatga tgtcttttgc tttggctgat atgatagcta taggatcagc
    20581 agtgcaaatt tctatgcatt taggtttagg caagaagaat ttagctagaa agatatttag
    20641 ctcaagtatg ttgattatct ttataatctc ttgttttatc ggaattttgg agtatttttt
    20701 aggacctgtt ttgattgatt gtttaaatgt tagcgatgag attaaaacga tgactaaaga
    20761 atgtatgttt gtttttgctt tgtttgcacc ctttactatg ctttcttttg ctttggataa
    20821 ttatttaaga atttgcggaa aaactgctta tagtatggta atgaatgtga ttatagcatt
    20881 aagcaatata gtgcttgatt atatttttat agtcgagttg ggttggggct tattttcagc
    20941 tgctcttgca acttgtttgg gacttgtttt aggtggtatt tttggaattt ttcctttctt
    21001 gtttcaaaat ttagagctta aaatttcgag cctatatatg aatttaaaaa tttttaaaaa
    21061 tattctttat aacggaagca gtgagttttt tggcaatatt tcaggatctt tgtatagtat
    21121 ttttgcaaat tttgttttat taaaaatttc tgatactcaa gccgtggcag ccttttctat
    21181 agttttatat attgatagtt ttattataat gcttattatt gctataggtg atgcaatgca
    21241 gcctgcgctt agttacaact atgctaaaaa agatttttca agaatcaaag ctattgtaaa
    21301 agtggtattt tttgcagggg gatttttatc tttattctct atagtgctta tattgatatt
    21361 tggagaaaat ttaatcacgc tttttacaaa agaaaacaat caagaattta aaacttttgc
    21421 ttatacagct ttgatgcttt ttgcttttaa ttattttttt gcatggttta atgttctaag
    21481 tggttctttt ttgacagctt ttaataaggc aagcttttct ttggttttaa gtttggcgca
    21541 aaatttattt atacctttgt tttttctttt gtttttatct tgttttatgg gtttaaatgg
    21601 agtatggcta agtccatttt ttgctgaatt ttgtgttttg attttagctt ggatttttct
    21661 taaaagaatt tttaaagatc tatctttata ggagatagat cttttttaaa ttttatcaaa
    21721 ggagcttttt tataattttt agaatttata tcctatacca gttaggacaa tttgataggt
    21781 ttcatcataa aatcctatat cgctatttct tttttctatg ccataatttg caaaaccata
    21841 aagtccgtta taacccaaaa attgattttt aacaactttt aaattaagct taactatatt
    21901 accatcttgt tttttgtgaa agataggatc agttcctact gcttcatatt tgctaagatt
    21961 taaatttgga gtgaagatgt aatcattagc aaaagccaaa tttgttccta tgctaaaacc
    22021 atatcttgaa tagctttgag cttttccgtc tgcatcattg taatcataat ttaaccctag
    22081 gtttaataag ctataattat agtttaattc aaattcgtga taatacccct ccctttttaa
    22141 agagctttgt gcgatagtgt ctttatcata tttgtttttg ctaaataaat atgaagtggt
    22201 aaatttccca aaatcacttt cataaagttg agagatttta aaaccatatc tatcaacatc
    22261 agtttcttct ctatttccta ttacataagg atttgcataa gctttttctc ttaaagagga
    22321 aattacagaa aaagaagtgc taaaacgctc taaataagct ctttcgtagc ctaaagctat
    22381 accgctgata tctcttccat tgtagttttt aataaaaatt ctatcattat ctataagatt
    22441 accatagtaa agttctgcac cgataaaagg aatgaaagag gagtctgaat tatcagcatt
    22501 gtgactgctt agataatcac tgtttgccaa ggttgaaata ttacttttaa tatcccttgc
    22561 acccacacct atgcttaaat ttccactaaa accttcttga aattctacag ccgtagctga
    22621 ttgggttaaa atggaggcta aaacacagga aaataaatat tttttcaaat gttctccttg
    22681 aaatgtttgt tgtttgtaat gaaattacat ttataattgt aactaatatt acattaaata
    22741 tttataaaaa aattaagttt tataatttaa gtttttttag atagaatttt tagaattaat
    22801 ttatatttat aaggaaattt agtgcagcaa gagtattatg acttggattt agaacgagct
    22861 attttaagca gttgtatcat gagtgaagaa gcttatgcta gtatagcagg tgatattagc
    22921 ccaaaagatt ttagtcttaa agctcaccaa gatattttta aagccgttat agcttgtagt
    22981 aataacaaag agcccatttc tgtaagtttt ttaagaaaac ataaaaaaat agatgagcaa
    23041 attttagcag aaattcttgc cactccttct atgatagatt tgcctgctta tgtaaatgaa
    23101 cttcacgaaa agtccgtaaa aagacaactc ttgagttttg cacatctttt gccaactcgt
    23161 atcaatgaag atcgtgctgt aagtgaaatc gcagatgaaa ttggtaaaga aatttttagc
    23221 attacaaatc gtgtgaattc tagagatatt aaagatgttg atatggtaat atcagaactt
    23281 tttgaagaat ttaaaaagca aaaaacttta gaaaataaag gtattatagg gcttgataca
    23341 ggttttgaag gtctaaataa aatgacaaaa ggttttaaag ggggtgaact tataataatc
    23401 gctgcgcgcc caggtatggg aaagacaact ctttgtttaa atttcattga caagatttta
    23461 agacaaaaaa aaggcgtggc tttgttttct cttgaaatgc ctgcaactca aatcatgcaa
    23521 agaatgctat cttccaaaac ttccattcct ttgcaaaaaa ttttaactgc agatttaaat
    23581 gatgatgaat gggagcgttt aggagatgct tgtaatgatt atagtcaaaa gaaattatat
    23641 atttacgata gtggttatgc aactattgct gatgtaaggg ctattttaag gcgtttaaaa
    23701 tctcaagatg aaagtatagg actttgtgtg attgactata tagggcttat gatgagtaat
    23761 tcaaatttta atgatagaca tttgcaagtt agtgaaattt caagaggact taagcttttg
    23821 gctagggagc ttgatatgcc tattatcgca ctttcacaac ttaatcgtgg cttagagcaa
    23881 agggcaaata agcgtccttt gatgagtgat ttgcgagaaa gtggagctat agagcaagat
    23941 gcggatgcta ttttgtttgt atatcgcgat gaggtttata gagaacaaga agaaaaagaa
    24001 agagagaata aagctaaagc tgaaggcaaa gcttatcaaa gactttttat accaaatcct
    24061 atgcaagaaa atgctgaaat tattgttgga aaaaatagaa atgggcctgt tggaactata
    24121 gaagttgtat ttttaaaaga aaaatcttgt tttgtagata aacctatagg ctatgaaact
    24181 actgaattta caggctagct ttaataaaat aagtttttaa tattttaaag ttatttttta
    24241 cgacacaacc tgtcgcaagg gtgttttata ctttctttgt tattttaaaa caaggagaga
    24301 aaatgttaaa acaaatcgca tttggtagta tagctcttac agctacagga tatggtataa
    24361 aaaaattata cgaaaaatta tccaagccag aaagaaaatt tgatacacat gctattgttc
    24421 caagctgtaa ggatgtaatc aataccgaag aatacaaact caaaagagag cttgaaatcg
    24481 aacaaaagaa aaatcaaatt caagaatttc tttgcgaatg tatggagtgt tatagcggct
    24541 tttcaaaata ttttaattct aaggaatttt tagaatttga gcaaaatttt acctctaaaa
    24601 ataatcacaa aatagaattt cttttgtcgt cttataaaga tcaaatgata aaagtgatcg
    24661 actatgctaa aaaatttaaa tgcttgagtg cttttttgga aacacaaagc gaaaaaaatg
    24721 acttagcggt tgtaaaaatg ataagtgaaa gtatggagag aaaaacacag agattttatc
    24781 tgcaaacaaa atttcaaact tttcctcagt atatttttcc ttctgtgtgg agttctccta
    24841 tgtgggataa acaatgggaa taatacttgg aattttaagc cttatagctg gctttgttgc
    24901 catagtgttg atgtgtggtt tgtattttat agcgtttatg gtttttgttg gcatagcgat
    24961 acttattttt ctttctatgc aaccttatcc ttataatata atattttgtg ctatatattt
    25021 aatcacaatt ttagcgctag tgctatggcg taaaacttaa aaatttcact tcccccttga
    25081 ctgggggggg ggatttgata aaatacaaag ttaaaaattt taaaaacaag gagaaaatat
    25141 ggcctacaga tatgataaag atttagaatt cttaaaagaa ttaagcagtc cagaactcga
    25201 ttagcttgta aaaattttaa cccatgataa agacgggaaa gttcgtttta ctgaagagtt
    25261 aaccaataat gatctttata aaaaacatta tccagatcat aaagaatata tcgaactcat
    25321 tttagaagaa tttcaaaaat ttggaggaaa tagtattctt aatatatttc gaggtggtgg
    25381 agtttatata atgaaattct acgcgatgtt gcaaaaaaat ttgatgtaaa atttgatgaa
    25441 aatgaaagca caaactccat agaaacatca cttttatgca aattaataga agaagagtta
    25501 aaaaattctc aagatgaaaa tacattaaga gaacttgtaa atattttcga acttggcatt
    25561 tctaatatta ataaacaaac agttgtaatg ggattgcaat ctcttattaa aataggtgga
    25621 tttaaaagct atcaaattgc agtaatagtt gcaaatcaag ttatgaaagt tttactagga
    25681 agaggtttat ctcttgcggc aaatgcaaca cttacaagag ctttaagtct tttttctggt
    25741 ccggtaggtt ggacaattat gaccacatgg actgcattgg atttagctag cccagcctat
    25801 agggttacta taccagcagt acttcaaatt ataattttaa gactaaaaca caatacaaaa
    25861 aactaaacac aaggaaatgc attaatggaa aatatttgcc aatttatcat agaaaatatt
    25921 gataaaaatt cattaaatac aaaaaaataa aacttgtttt caatatgcaa gagcaagaaa
    25981 ttacaacaat ttcgaagata tttaaggtat cttcggaaca cattattgct ttttatgata
    26041 cctcaacatc ctttaattat tttagcaaaa ctaccggaat atgttttact ggcaaagaag
    26101 ttatctttaa aagaaaagaa gatgaagttt taatgaaaat caactatgaa gatttcaaag
    26161 aggcaaataa atccttacct gaaaaaacaa caactcttca agacatcaaa tttcccatat
    26221 cttttcataa tcttggaaca tcttatcttt catttgatga tttcaaaaag aaaaactaca
    26281 tagaagaaaa tgatgagctt ataataaatt ttttacacat cttaacttca aaaaataaca
    26341 tagaaagttt taaaaatgaa agtatgtttc cacaagcctt agaaaaaaca aacgaaagta
    26401 ttaaagaaaa ctatataaaa gttatcatta aaataatatt agatcaatac ggttttttag
    26461 atgaaaaaag atcaatcaaa atttttgctc taatgaataa aattaatgtt gcttcagaaa
    26521 caaggtataa aatacaagat tttttacata ataaacattc tagttttgaa gatttgctaa
    26581 acatcataaa acaagaatct agatttatgc aattcaaata tattttaatt tcgctaataa
    26641 aagacttaat tgatatagat tttgaagata ataaaattta taattttttg tatgaaaaca
    26701 aagacatttt taaaatcaaa gaccttaaag aaatctattg ggtaaaagaa atcattaaaa
    26761 aagaatatca aataatatta gacgataata aagaaattca gcaaattttt aactttatat
    26821 ccgaaacagc tacaaaaaat aatatatcat taaacggttt acatctttca ggaatgacaa
    26881 ttggcatgtc tgtatcaatt atggagttac taggatttgg ggaattaata aaattaccac
    26941 taattgattc ttcaaaaaaa tatcacaata aaaacaaaca acaattacgt ctttttatta
    27001 ttcaagaaat tctcaaagaa aatcaaaaaa caattaccca aattattgat atcatcaata
    27061 atttaattga gcaatgtaat acaaatacac aaaatttaca agaattaata aaattattaa
    27121 aattggcttc aaaaaataat gaaactttta aagaaaggga aaaactttta tattgcccag
    27181 aaacgctttc attgataaca ataaataatc atctaaaaga agatgatatt caatttatag
    27241 aacaatacta tacctataat caaaatactc atgagtatga gcgcaatgac aatctttctt
    27301 cgtcggattt agaaaaactt tcaaattttt ttaaattaaa aaatctataa ggataatttt
    27361 atggataaaa tacaagaaaa caccaaaata gaaaaggcta tattagccga aaaacaacaa
    27421 atctttttaa tacaaaataa attatccgaa attgaaaaaa tatcaaagaa taatgtttaa
    27481 ccatagaaca gattcaaaat agtatcacag aaaaaaatca aaatttgagc aatatagaat
    27541 ataaggaaaa tcaatcaatc gattcattgg aaaatttttt ttaacactta tagcaattgg
    27601 gaaacatatt gtcaaaaaat tgaaaaatat ttaaacttaa aaaaataaac tcaaatgaag
    27661 attctttaaa atttttgatc acttattcaa atttatcaga tgttaaaaaa agaattgaag
    27721 atgaatttac ccatagaaat gcagagtgcg ataagtatga ttatttaata gcaataacat
    27781 gtggagcaat agctggcatt atggacattt ttttagttgg aaatcctaaa gatagctatc
    27841 taggaaaaaa ggtagataag acggtagaaa aaatgactca aaaatttgca caattatgtg
    27901 gttgggataa gcaaaaagca ttagacaaaa acaaagattt aactaaaagt gtatagcgtt
    27961 tttggaaaac aaatttaaaa ttaattatga tcaaactact acaaatggaa gaaatggaac
    28021 aaatggaaaa gtagataatt taagtatgaa aaatcatcat ttaaaaagca taggtcactc
    28081 tccagatatt ttcgggttat ttgtatctat agtaaatcaa tttaccaata cttcaacttt
    28141 tgtcagcaac ggaaaaatca taaccataga tacaaatact tttgaattac aagggggaaa
    28201 ttttattgct aaaatatttt gtggattttt taattggttt ggacatttag catctgattg
    28261 gtgtggatct agtggaggca aggaaagagg tgcaggcatt cctatgcctt tttataattt
    28321 atttttactt tgtgattttg gaaattttgg acaacataga caaacactag cacaaattgc
    28381 aacccaagtt tttgaacaag gatatgatct taggcatgga gttactatgt ctattcctgt
    28441 tatgattaat aaaatgctaa ttcgttttat gtatataata aaagctaaat tttaccacaa
    28501 aaaagaatgg aaagaatgta taccaaaaga tgacatacct gaattaaata aaatgctttt
    28561 aataggatct ggtacttttt tattaattga tactggtggt gcatggataa aaagtaaaaa
    28621 tcctataaca aatccggtag ttttcctttc tgaaatcaat ttaattaatg ttataagatt
    28681 tagcacttta attcttaaag aaatttatat attatataat aatggaaaaa tagataataa
    28741 aaaattagaa aaatatctag atgacacttg taaaatttta ttaattgaag ctcataataa
    28801 atctaagcct tttaaagaaa tcctaaaata aggcaaagca tgaaccacct tttaatcctt
    28861 tataatccct actatcaaga agatgtcatc aagcaacatt taagcatttt acaagagaaa
    28921 tcccaagttg cctttggcaa aatcaaatca aaactcaacg atcaagaaaa gcaaaattcc
    28981 ttagaagaaa tttaccaaag tacaaatgaa gaaaatttct tgcaactctt tttaagcgat
    29041 tatgctaatt tatttgtcgc taaggtggta aaaatttcta aaaatgttga tgaaagtttg
    29101 attcctagtt attataaaga aaaaaattta gaagtggaag acttttttat tattagtgat
    29161 ttaagagaat tggtcaggga agattttagt cgtttaagag ataaattttt agccaatttc
    29221 atcacaccaa acgatcacac ctatgctatc tatggcaatc attacaccta tcctttgcct
    29281 gtgagattaa aagaagagtg ttcttatttt ttaggagatg aaaagcatta tctaagtgtg
    29341 tataaaagca aagaatacct agccatgcaa gaaaatttca tacgctttgt ttttggcaaa
    29401 aggatttttt atctcttaca ctctgatagc ataagcaata tcattcatgc agaattagag
    29461 cttttgcaaa gcgaaaacga tcttttaaat gattttacaa gtattatagt caaatactct
    29521 aaaaccttag aatatgaaat ttacgctttt gccaaaaaag ttcttttaaa agcttgtatg
    29581 aaagatccta gcctttatga tttagcttat aatgtccaag gcaaatcttt tatacttaaa
    29641 gattttttta cccaaaaacc caatcttgga agtattaaat ttctactcag acatgaaaat
    29701 atccaatgtc atttaggaaa aagtttaact caatttatca attatccttt ttcaaaaagt
    29761 cttactatca ttcaagaaat ccgtaatgaa gccgttcatg cgaaagcccc aagtttaaat
    29821 gaagtcaaaa aacttagaaa tgaaatttta ggcatagaag gcgtaagttt gttaaaaaga
    29881 attttaaccc acaaggaaat ttcatgaaag aatacgacaa attaagcata cgcttggtgc
    29941 agattttatc aaaatttaac aatggggaaa gtctaagcgc ccaagagctt gcacaagagt
    30001 ttaatgtcga tacaagaacc atacaaaggg atcttaacga aagacttact tttatgccta
    30061 ttaaaaaaga aaatggaaga tatgttttag aaagctttgc tttgggaaaa ttaagcttta
    30121 aagatataca gaatttcgcc accttaagtg gcattgctga gctttatcca aaactcgatc
    30181 aaggctttat agttgatctt ttaagccata gggtaaataa agttttgatg gtaaaaaatg
    30241 aaggttttca aaaggtggat tatgagcttt ttaaagatct tagtgtggct atactcaaac
    30301 acaatgtatt aaattttttc tataaggaaa aagaacgcca aatcaaacct tacaaactcg
    30361 taaattacaa gggaatttgg tatcttttag gggatgaaaa cgataaatta aaacatttta
    30421 atttagataa aatttcaaaa cttcgcacta aaaatgaaaa ttttattccc aatgaaaaac
    30481 ttgaggaaca aatccaaaat gatcctaata tctggcttgg agaaagcaaa gaagtgattt
    30541 taaaacttga taaaaatgct aaggaatatt tttttagaaa agaaatacta agcaattatc
    30601 aaatcattga taaagatgaa acaagctata ctttaagcac tcaagtttcc tatgaagatg
    30661 aaattttaca tttggttaaa cagtggattc cttatataaa aattctagct cctatagaac
    30721 tgaaaatacg gctagaagat attttaaaaa gttatttaaa caatctatct aaataaaatt
    30781 tattttaaat ccttaactgg ttgcgaaggg gagatttgaa ctcccgacct tcgggttatg
    30841 agcccgacga gctaaccact gctctacttc gcggcatata agatctttga aatataaaat
    30901 aagaagtgga tggggtaaag ggattcgaac ccctgaatga caggaccaaa acctgttgcc
    30961 ttaccgcttg gcgatacccc aataaatatt ttttaaaagt gtgattataa tgaattttaa
    31021 tttatttgtc aagcaattta agttataatt ttaaaaattt taaggaaata aaaatgaaat
    31081 ttgttagcgt agaacaagcg attaaggatt tacaagcagg aaaaatgctt gttatggtag
    31141 atgcagaaga tagagaaaat gaaggcgatt taatctttcc tgcgcaattt agcactcaag
    31201 aaaaagtaaa tttcatgata aaagaagctc gtggtgtggt ttgtgtagcc ttagatgaaa
    31261 ctttggcaaa aaaatttgaa cttcctttaa tggtgcctaa aaatacttca aaccacgaaa
    31321 ctgcttttac tataaccgta gatgcaaaag atgctacaac gggagttagc gcctatgaaa
    31381 gaaatatgac tatacaaatt tttgccgatg ataatgctaa agcgagtgat tttgtaagac
    31441 caggacatat caatccttta atcgcaaaaa aaggtggggt tttagaacgc acaggtcata
    31501 cagaaggcac ggttgatctt tgtaaattag caggattaaa aggtgcttgt gtgatttgtg
    31561 aaattgtaaa agataatgga gatatggcaa gaagagaaga tctagaaatt ttttgccaaa
    31621 aacatgattt aaatatgata gccgtaagcg atcttataga atatcgccta aaacatgaaa
    31681 gccttattaa gcttgaagaa aaaagtcaaa gtgttttagc aggctttaaa gcagaaaaat
    31741 ttatctttag tgatcataat caaacccaac acatagcttt ttgctttaaa gatatcaaaa
    31801 aatgtgaaaa tgttaaattt catatcagtg gtagtgattt tgagctttta acttcagata
    31861 aattttcaaa acttttagag caaatcaaat ttcttagtga aaatggtggc gttatagttt
    31921 tcatgcaagg agaaaaatcc agtactactc aatacaaaaa ctatggtata ggagcacaga
    31981 ttttaagata ttttggtata gaagaaatta aacttttatc tcaaagttgt gataaagact
    32041 atataggttt agaaggtttt ggtttaaatc ttaaagcttg taattttaac taaaaaggaa
    32101 aaaaatgact ttaaaagaac aaattttaaa cgatatcaaa gaggcaatga aacaaaaaga
    32161 tgattttaaa agagatagtt taagaactct aaatgcagct tttaagcaaa tagaagtgga
    32221 tgaaagaata gagttggata atgaaagaat ttataaaatc attgcaagtg aaatcaaaaa
    32281 acgcaaagac gtaatcgaac tttatcttaa ggcaaatcgt gaagatttag cacaaaaaga
    32341 acaaaatgaa ataagtcttt ttgaaattta tctgcctaaa caactaagtg atgaggagtt
    32401 aactttagcc ttaaaacaac ttatagaaga attgggcgta agttcactaa aagaacaagg
    32461 tttggtaatg aaagaagcta aaataaaatt aggtgcgagt gttgatggca aaagacttaa
    32521 tttagcactt aaagagcttt tacaataatt ttttggagtg ttattatgaa agagttaagc
    32581 ggttcggcaa tgatttgcga ggctttaaaa gaagaaaatg ttaaaattgt ttttggttat
    32641 cctggaggcg ctgcgcttaa tatttatgat gaaatttaca atcaaaagta ttttaaacat
    32701 attttagtgc gtcatgaaca agcggctttg catgctgctg atgcttacgc aagaatgagc
    32761 ggagaagtgg gcgtagctat agttacaagc ggaccaggtt ttacaaatac tattacaggt
    32821 ctagctacgg cttatagcga ttctatccct ttggtgttga tttcagggca ggtggcaaat
    32881 tctcttattg gtacagatgc ttttcaagaa attgatgcag taggcatttc aagaccttgt
    32941 gtaaagcata attatttagt tacttgtata gaagagtttc cacgcatttt aaaagaggct
    33001 ttttatatag caagaagtgg tagacctggg cctgtgcata tagatgtgcc aaaagacgta
    33061 agtgcaactt tgggactttg ggaatactct aaagaaattt ccatgaagac ttataagccc
    33121 gtttataagg gtaactcaaa gcaaattaaa aaatttgcag agcttttaaa agaagcaaaa
    33181 agacctttgt tttacttagg tggaggttgc atcagttcta atgcaagcga gcaaatcaga
    33241 gagcttataa aatttacaaa aattccagca gttgaaactt tgatggcgct tggaacttta
    33301 agaagtgatg atgtttttaa tcttaaaatg gcaggcatgc atggaagcta tgctgctaat
    33361 atggctttaa gtgagtgtga tttgcttgtg agtgtaggag cgagatttga tgataggatt
    33421 acaggaaaaa caagtgaatt tgctaaacat gcgactatag ttcatgttga tattgatcct
    33481 agttctattt caaagattat caatgcgcat tatcctatag taggagatat taaagaagtt
    33541 cttaaagagc ttttagaaga gcttaaaaag gaaaatttca acacaacttt taaagaatgg
    33601 catgaaactt taaagcgtta taatgaactt tatccgcttt cttatgaaga tagcaatgag
    33661 attttaaaac cgcaatgggt gattgaagaa tgtgcgaaaa tggctccaga tgcaaggatt
    33721 attaccgatg tgggtcagca tcaaatgtgg gtagcgcagt tttatccttt taattatcca
    33781 agacaacttg caacaagtgg agggcaagga actatgggat attctttacc tgctgctttg
    33841 ggtgcaaagc ttgctgtggg tgaagaagtg gtgattaatt tcgtaggtga tggatcggtt
    33901 ttaatgaata tccaagagct tatgactgct tatgagtatg gtataaaagc tataaatatt
    33961 attttaaata atgccttttt aggtatggta agacaatggc aaagtatgtt ttataaagag
    34021 catttttcac aaactgattt aagcactcag cctgatttta tcaaaatagc tcaaggtttt
    34081 ggttgtgaag gttatgaaat ttcaaacaaa gaagaattca ttcaagcttt tagccaagct
    34141 ttaaaaagtg ataaaacctc tcttttaaat gtaaaaattg atcgctttga agatgtttta
    34201 cctatggtgc ctgcaggagg tgcgatttat aatatgattt taccaaaggc aaaggataga
    34261 caatgagaag ggttttatcg gtaattgttt taaatgagca tggggtttta tctcgtatag
    34321 taggactttt ttcaggaaga ggttataata ttgactcgct tacagtagca cctttggaaa
    34381 ataaagaatt ttctcgtatt aatatagtca cttcaggaaa tgaaagaact tttgagcaga
    34441 tagtcaaaca acttcataag ctcattccta cttataaagt gatagaaagt gaagaattta
    34501 ttgacaaaga aatggcttta gtgaaaattc ctttaaatga aaatttaggt ggacttgatg
    34561 ccgttttgaa agcttataat ggtactattg caaatagcaa tgagaatttt ttgtttttaa
    34621 tggttgctga tgatgcaaat cgcattgata attttttaaa aacaattaaa aaatacaatc
    34681 ctagtgatat agttcgcagt ggatctgttt tgatggagat taaatgaaat taagtgaaat
    34741 agcagaattt ttaagcttgg aatataaagg cgaggatata gaaatcagtg ctttaaattc
    34801 tttattgaaa gcaaatttta cagagcttac ttattgtgat ggtgagaaaa ataccaaaga
    34861 tatacctcac acaggagctg ctgctatttt agtatctaaa gaatatgaaa atttagtacc
    34921 taaagatact aaagctttga ttactcaaag tccacatttg agttttgctt ttttaagcaa
    34981 gctttttgct aaacctttga taagcacagc taaagaaaaa gtacaaaata tcgcaaaaag
    35041 cgcaagaatc atgcctaatg tttatatagg tgataatgta aatatcggtg aaaatgtaat
    35101 cattatggca ggagcttata taggcgataa tgtcagcatt ggtgatgaga gtattattca
    35161 tcctaatgta gtgatttata atgatactaa aatcggtaaa aaatgtcatc tgcttgctaa
    35221 ttgtgtaata ggaagtgacg gttttggtta tgcgcacaat aaaaacggcg aacattataa
    35281 aatttatcat aatggcaacg tggttttaga agattttgta gaagtggggg cttgtacaac
    35341 tatagataga gcagtttttg atagtactat tatcaaagca ggtactaagg tagataatct
    35401 agttcaaatc ggacataatt gcaatatagg tcaaaattgt atcattgtgg cacaaactgg
    35461 aatttcaggt tcaagtgagt taggacgcaa tgttattatg ggtggtcaaa gtgcaacgag
    35521 tggacattta aaaataggcg attttagcac tatagctgca agaggcggtg tgagtaaaaa
    35581 tttagaaggc gggcgtgttt atggaggttt tcctatcatg cttcaaaaag attggctaaa
    35641 acttcaagct aaaatagcaa taaattttaa agaaaaatca caagattagc atcgcatcgc
    35701 cataagagta aaagcgatat ttttctttta tggcgagttc ataaagtttt aaacactgtt
    35761 ctctaccgat aaaagctgaa actagcatga taagagtaga ttttggtaaa tgaaaattgg
    35821 ttaaaagatg attttgtctt ataggtggat tttgcgggtg taaaaaaaga tcacaaaaac
    35881 cattttttgt tttagttctt gtataatatt ctatggttct tgttaccgtt gttcctacgc
    35941 ctaaaatagc ttgtttagaa tctataattt cacatgcttg ctgcggaata ttaaaaaatt
    36001 cgctatgcat tttatgctct tgtatatttt cacattccac gcttttaaag gttccagctc
    36061 ctacatgcaa ggttaaatga taaatttcgt gtttttttct taaattttca agcatagtct
    36121 cactaaaatg taaacttgca gtcggagcag ccactgcgcc taaatttttt gcaaagatac
    36181 tttgataatc tttcaaatca cttttttcat cctccctttt aatataagga ggcaagggta
    36241 tatgtcctat cttgtcaagc aggttgtaaa gatttgaggt gtctaaggtt ttatcatttt
    36301 gaaaaaattg aacttttcga agaccatcat ttaaaagttc tacaacgcgt acttttaaat
    36361 cctctttaaa atataagatt tcatcttttt taatgcgccc tttaatttga gctagaaaaa
    36421 gcggattgtg agaatttaaa aaaggttgat gcaagaaaag ctctattttt cctccgcttg
    36481 ctttattgcc ataaattctt gctttaataa ctttggtatc attgaaaaaa atcgcgcagt
    36541 tgggtaaaaa gtcttgtaaa tttttaaaag tagtatgaaa aatttctttg tttttgcgat
    36601 caaaaaccaa aagcctagca tcttcttttg gatttgtagg atagttggct atgagttcat
    36661 tagctagagt gtaatcatag cttgaaagaa gtaagtcttt attcatcact ttctttatct
    36721 tttggagcag gatttacctt ttgaacaatt aaaatagaaa gtccataaag tccgcaaagt
    36781 ggtcctgcca ttaaaaattg agataaaaca tcaggtggag tcataaaggc tgaaaaaaca
    36841 aaaataacta aaacagctat gcgaaaatgg cgttttaaaa aactatcatc tataagtccg
    36901 attttagcaa agaaaaaggc aattacaggc atttcaaaag ctaagccaaa agccacaaca
    36961 actttggtaa aaaaatctac ataagttcct atggtaatca caggattaaa atcttcattt
    37021 aaaccaaaat taatcaaaaa tttaaaagcc aaaggcacta caacaaaata gcaaaaacaa
    37081 gccccaaagg caaacataat gcttgcaaag ctaacaaaag gcactacaag gcgtttttca
    37141 ttatcataaa gtcctggagc tacaaatttc caaaattgcc aaaaaattac aggtagagaa
    37201 aagataaagg ctgcaaaaaa actaaccttc attgcggtaa ataaggcttc ttgtacttca
    37261 attacattca catgtttggc tacttcgggt aaaacagcta taagtggagc ttttagaata
    37321 tctaagatat agcttcgtag agcaaaacat acaataaaca taactacaat gcaagcaacg
    37381 cttataaaaa ggcgttttct aagttctatt aaatgaggtc ttaattcttc aaacatttat
    37441 ttttccgttt ttatcttgtg tttctaattt gctaagattt ggtttttctt ctgtatttaa
    37501 attttgtccg ctaaggttat tttttacttt atcatctctg ctatcaaagg ttaaatctac
    37561 ctttgtttta tctaaaatat ctctcttaag gtcatcaaat tcttcaaagc tgagtttttt
    37621 gcgtatattt tcattagtgc ttgaaaattc atctttgtat ttcttagctt cttcttttaa
    37681 gtcattgatg cgtatttctt tttctatgct tgattttgca tcatctatgt tgcgttttac
    37741 agcctttaga atttttgcta tttgtactat agcttctgga agtttatcag gtcctaagac
    37801 taaaatcgct acaactaaaa taactataat ttcaccaaaa ctcattaatc attactcttt
    37861 gatttgatat tttaataaat attttactta aaaaacttaa atttaagatg agagatataa
    37921 agcaagttca tcgctaatga gaaaattagg attaaaatat cttttatttt tgtaaaaaag
    37981 ttttttttct tttaataata tatttatttt gtctttttgc cattgattga gttttgtttc
    38041 atcaatccct actatacttc taagtcctaa aaataggtgc tctaaattca agtctttgga
    38101 acttagttgc tctatagatc taaaagtagg attttctatg taatttttta aattttttgc
    38161 tgtataaaaa cgcttatttt cataaaatcc tactgcactt aatccacaag ctaggtagtt
    38221 ttttccttgc caataagcaa gattatgttt gcaaatttgg gctttggttt ttgaaaaatt
    38281 actgatttca tattgaaaaa agtcaagctc tagaagttgt ttgatgaaaa atttcattaa
    38341 attaggagca ttttttttga aatgttcttt tttagcaaag gctgtgtttg attctatggt
    38401 taaattataa gcactaaggt gtgtgattaa atccttgatt tgttttaagt gtaagagttc
    38461 aaattcaagc atttttttat tgtctaattt cgtatcataa ataagatcta aattgatatt
    38521 tttaaaacct actttatttg cgttttctaa tgttttgata atcatttctt gattgtgaat
    38581 tcttccaaga aagtgaagtt ttttaggatg aaaactttga actccaaaag aaatgcgatt
    38641 aactcctaga tttttcatat ttttaagcca atttaatgtt gctgagttgg gattagcttc
    38701 gcatgaaatt tctacatttt tatctagtaa gggatataaa attttaaaaa tatcttcata
    38761 attatacgca ttaacacaac ttggtgttcc tccgcctatg aataaggttt taatttgatt
    38821 tgattgaatg ttaaattgtt ttaattgaaa aacaatatct tcttttaaag ccttaaaata
    38881 ggctttttca taatcatttt ttttcaaact tgtaaaagcg caataattac atttgctttc
    38941 acaaaatgga atatggatat aaaaatgcat aaaaacccta aaatatttta ttaaattttt
    39001 taatgtattt taataaaaat ttgatttgat ttaggttaaa attatatcct tgagatttaa
    39061 ggaacaatat tgtggaaaac gagaaaaatt atagaccaaa tgttgcagct attgttttat
    39121 caagttctta tccttttgag tgtaagattt ttatagctag aagaagtgat atggataata
    39181 tttggcaatt tccacaagga ggtattgata aaggtgaaag tgtcaaaaac gctttattta
    39241 gagaactaaa agaagaaata ggcactgatg aggttgaaat cattgctgag tatccagaat
    39301 ggttgagtta tgattttccg agtaaaattg ttaaaaaaat gtatccttat gatgggcaga
    39361 ttcaaaaata ttttttagtg cgtttaaagc acggtgctac aatcaatatc aatactaagc
    39421 atcctgaatt tgatgattat caatttgtga gtgttaaaca aatttttgaa atgattaatc
    39481 atttcaaaaa aaatatttat gttagagtga tcaaatattt tgaagagaaa ggttatatct
    39541 aaaatgctta tagttcaaaa atatggtgga acaagcgttg gaacacttga gcgtatcgaa
    39601 gcagtagcca atagggttat ccaaagtgcg caacagggta atcaacttgt tgttgtagta
    39661 tctgcaatga gtggggtgac aaatactctt atcgagcaag ctgaatattt tagtaaaact
    39721 cctaatggta aagatatgga tatgctttta agcagcggag agcgtgtaac aagcgcttta
    39781 ctttctattg ctttaaatga aaagggttgt cccgctatat cgttttctgg gagaaaagca
    39841 ggaattatta cagatagtgt ttttacaaag gcaagaattc atcatattga tacaaaagcg
    39901 ataaaatcag aacttcaaaa tggtaaaata gttgttatag caggttttca aggtgtagat
    39961 gaggaaggta atgtaactac cttagggcgt ggtggaagcg acttaagtgc tgtggcggtg
    40021 gcaggtgcct taaatgcgga tttgtgtgaa atttataccg atgttgatgg ggtttataca
    40081 acagatccaa gaattgaacc aaaggcaaag aaattggata aaatttctta tgaagaaatg
    40141 cttgaacttg caagtttagg tgcaaaagtt ttgcaaaatc gctctgtaga acttgcaaaa
    40201 aaattaaatg ttaatttagt aactagaagt agttttaaca ataacgaagg aacaatgata
    40261 acaaaggaag atggaatgga acaagcttta gtaagtggta ttgctttgga taaaaatcaa
    40321 gcaagagtga ctttaagaaa tatagaagat aagcctggaa tcgcagctga aattttttct
    40381 gttttagcaa atgaaaatat taatgtagat atgattatac aaaatgttgg agttgatggt
    40441 gctacaaatt tgggttttac ggttcctcaa aatgaacttg aattagccaa aaatgctatg
    40501 caaaaaattt taagctcaaa aacaactata gaaagtgata gtgctgtagt aaaagtttct
    40561 atagtcggcg taggtatgaa atcacattca ggagtggcaa gtaaagcttt taaagcttta
    40621 gctgatgagg ggattaatat cggtatgatt tctactagtg aaataaaaat ttcaatgata
    40681 gttcatgaaa aatacggaga acttgcagtt agagcactac atgagtgcta cggacttgat
    40741 aaataaatga gtgatttttt aagttttact cttgaaaata ttcgcaatgg cggagctttt
    40801 atggcatggt tggagtcgcg tcgtttagaa tgggctcctt tgatggctgc aagacttaaa
    40861 tatcttttag aaggacgcac ttttgtatta atgtgtgatg aacaaagatc ttggtatgaa
    40921 gagtattttt taaaaaatat aaattcaaaa gccactcgtc ccatgctccc ttttgtgtcg
    40981 ttaaattctt tatgtaagaa gaaagtacaa agttcagaag atatagcttt acttaatgac
    41041 ttgcttgaca tttcttttcc taatggttat gtatattttt atataggaag tgcttctgat
    41101 aataaatctt taatcgctaa atcaagagat gatagtttat tgtggctttt tgatgagcag
    41161 ttacaagata gtttttattt aaattctaaa gataaagact tggatatcaa gcttattagt
    41221 ttatatcaac tttttgatgt aagtttggat gcaatattat tttccaaggt gcaattagga
    41281 taaatatttt gtttattagt aagattatta tcagtgaaga ttttttaggt attaaggaag
    41341 aaatgattaa taattttggt attaaaaaat taagattttt tataccacaa aatgaatttt
    41401 tacttgatga tgcaagagcg gttgaaaaag aaagctatat cgcagaaact gaagaaaaaa
    41461 ttattgtttt aatggcggat tcttatagga tagaagcgca aaatttttta cttaaactcc
    41521 ttgaagaacc tccaaaaaat attaaatttc ttattgtgat accttctaaa aatttacttt
    41581 tacctactat aaaatcacgt cttatttgtg aaaaaagaaa agttgaaaag gaagttaaaa
    41641 aacttgattt agatcttaaa agaatggatt taagaatgct ttttgatttt ttgcaaaaaa
    41701 atgaaaattt ggataaaaat gaacttatgg atcaaatcgc attgcttgct aaagaatgtg
    41761 tgaaatataa agattttaac gctgaagaat tagagttttt ttatgaaagt tatgagcttg
    41821 caaaattaaa ttctaaaagc ggggtgcttt tagctactct tttattaaat tactatacaa
    41881 agaaataaaa tgaaattttt taaaatcaat ccaaacaccg attttaattt gctttgttct
    41941 ttcataaacc ctcataaaat gggacaaaag atcatgagtg aaaaaacaaa aattcatttt
    42001 atttttatca aagatatttc tactcctgcg gcaaatattt taaaacaaga tgctttaaga
    42061 gtaggagctg aacttattac tcataaagaa gtaattactg caaaaatcac tcattcaaat
    42121 gcgcttttaa tggcaagtaa agagcaaatt caaaagcttg ttgtcaaaga aaaacttcaa
    42181 gattttggac ttaaaaattt ggctcttttt ttgcaaaaag attttttaaa accgaaaaaa
    42241 gccgagctta tggcagtgat taatgtcaat gaagacagtt ttaatgcaaa aagtcgtgtg
    42301 agtgaagaag actttgaaaa aaggcttaat gactttcttg ctttaaagcc tgaatatatc
    42361 gatataggtg cggtaagctc aagacctggg agtgagtatt gtggcaagga agaggaattt
    42421 aaaagactga aaaaagtact tgacttaatt tatgagaaaa attattacga acaagcaatt
    42481 tttagtttag atagttttga tgaatattgt ctagaatatg ctttaaataa gggttttaaa
    42541 ctcattaatg atattacaag tttaagaaat cttaatctag ccaaacttgc aagtaaatat
    42601 ggggcaaaat attgcttaat gcacatgcaa aacaatccaa ataacatgca agataatcct
    42661 ttttatgaag atttgcttga tgagatgact ttgtttttta aagaaaaact tgagctttta
    42721 gaaagttttg gagtaaaaga aagtatttta gatgtaggta ttggttttgg aaagagtgcg
    42781 gggcataata tgattttaat caaacactta gaacattttt tgcaatttaa taaaccttta
    42841 cttataggtg cgagtcgtaa aagtgtgatt aatgcgtatt ttcaaagcga gattaaagat
    42901 cgtttagcgg gaactttata tttgcattta aaggcttttg aaaatggtgc tagtattata
    42961 agagtgcatg atttatatga gcataaacaa ctttttgctt tagcgcaggc aatggataat
    43021 ataggagttt agatgaaaaa agaagagtat ttagaaaaag ttgctttagc taatttgtgg
    43081 atgagggcat attatgaaaa agatgaaccc ttggctagcg atgaagaata cgatgcttta
    43141 atcagagaat taagagtttt tgaagaacaa aataaagatg aaatttcaaa agactctcca
    43201 acgcaaaaaa tagctcctac tatacaaagt gagtttaaaa aaatagctca tttaaagcgt
    43261 atgtggtcga tggaagatgt gtttgatgag agtgagctta gagcttgggc aaaacgcgca
    43321 aaatgtgaaa aaaacttttt tatagagcct aaatttgatg gagcgagttt aaatttgctt
    43381 tatgaaaatg gtaaattagt aagcggcgcc actaggggcg atggcgaagt gggtgaggat
    43441 ataacgctta atgtttttga gatagaaaat atacctaaaa atatagccta taaagaaagg
    43501 atagaaattc gtggagaagt ggtgatttta aaagatgatt ttgagaaaat caacgaaaaa
    43561 agagcccttt taaatcaaag tttatttgcc aatccacgca atgctgcaag tgggagttta
    43621 aggcagcttg atacaagcat cactaaagaa agaaatttga aattttatcc ttggggagta
    43681 ggggaaaata ccttaaattt caccaaacac agcgaggtga tgcaatttat cagagagctt
    43741 ggttttttaa aggatgattt tgtaagactt tgcgctaatt tagacgaagt tttgaaagct
    43801 tatgatgagc ttttagctct aagagaaaaa aaacctatga tgatggatgg aatggtggta
    43861 agagttgatg atcttgcact ttgtgaagaa ttaggctata cggtaaaatt tccaaaattt
    43921 atggcagctt ttaaatttcc tgcgcttgaa aaaaccacgc gtttaatagg ggtaaattta
    43981 caagtaggaa gaagtggagt gatcactcct gtggcagttt tagaacctgt aaatttagat
    44041 ggggttgtag taaaatcagc cacccttcat aattttgatg aaattgcaag acttgatgtt
    44101 aaaatcaatg attttgtaag cgtgataaga agtggcgatg ttatccctaa aatcactaag
    44161 gtttttaaag agcgtagaga aggtttagag atggaaattt cacgccctaa gctttgtcct
    44221 acttgccaaa gtgagctttt ggatgaagga actttaataa aatgtcaaaa tatagattgt
    44281 gaagatagac ttgtaaattc tatcattcat tttgtttcta aaaaatgtct taatatcgac
    44341 ggactgggag aaaatatagt agaactttta tacaagcaca aaaaaatcac tacgcttgag
    44401 agtatttttc atttaaaatt taatgatttt gaaggtttgg aaggctttaa agaaaagaaa
    44461 attaacaatc ttttaaatgc catagaacaa gcaagagaat gtgagctttt tcgttttatc
    44521 acagctttag gaatagagca tattggcgag gttgcggcta aaaaattaag tttaagtttt
    44581 ggtaaagagt ggtacaagca aagctttgaa gcttatgcca atttagaagg ttttggagag
    44641 caaatggctt taagtctttg cgaatttacg cgtgttaatc gcacaagaat tgatgagttt
    44701 tacaagcttt taaatttgaa aatagaaaaa cttgaaatca aaagcgatgg tgtgattttt
    44761 ggtaaaactt ttgtgattac aggcactctt tcacgcccaa gagatgagtt taaggctttg
    44821 atagaaaagc ttgggggtaa ggtaagcggc tcggtttcta aaaagactga ctatgtgctt
    44881 tttggagaag aggcaggttc taagcttagt aaggctaaag agcttgaagt aaaatgtata
    44941 gatgaaagtg cttttaatga gcttgttaaa gaatagttct tatattttaa cgcttttaag
    45001 cctttttggc tttttgctaa cttggcaaag gagtgctttt tctttatttt ttttaatttc
    45061 tattttttta acactttttt gggaattctt tttattttta aagcttagaa aaaatattat
    45121 aaaagaagct actttgatta agggaagttt gttttatcgt gttagtatgg gggattttta
    45181 tctttatatt tttagttttt tcttggcgat ttttggactt gtttctttat ttttaaattt
    45241 tttaaatctt gaaaaaattg attttgtttt tatatttata attttacctt tattgatgat
    45301 atttttaaaa aaagaattgc atttgcaatt tgtagataat gcttataatg attttagaat
    45361 agttgttatc gctagttttt ttactgcttt attttatgca ttttatgggc ttttttttac
    45421 ttacaatgaa cttttaaatt tagaactttt ttctaggaaa atcattgcct ataagagtgc
    45481 ttcttt
//
LOCUS       DARBAR010000002        32056 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.002, whole genome shotgun sequence.
ACCESSION   DARBAR010000002 DARBAR010000000
VERSION     DARBAR010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 32056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32056
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.002"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(86..1123)
                     /locus_tag="SB815_000054"
     CDS             complement(86..1123)
                     /locus_tag="SB815_000054"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HEG0905835.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGY
                     TAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHT
                     KNAPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLILALTKTSD
                     PKKIQEYFLKY"
     gene            complement(1177..2748)
                     /gene="recJ"
                     /locus_tag="SB815_000055"
     CDS             complement(1177..2748)
                     /gene="recJ"
                     /locus_tag="SB815_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEG0905836.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            complement(2735..4366)
                     /locus_tag="SB815_000056"
     CDS             complement(2735..4366)
                     /locus_tag="SB815_000056"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEG0905837.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            4486..5109
                     /locus_tag="SB815_000057"
     CDS             4486..5109
                     /locus_tag="SB815_000057"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEG0905838.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            5229..6614
                     /locus_tag="SB815_000058"
     CDS             5229..6614
                     /locus_tag="SB815_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEG0905839.1"
                     /translation="MDKQFFQDFLMLSQAHTIATLAMLCVAFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAKEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIHEG
                     DKQIREIQTFSNIILGLIPSNIITAINKENIIAIVIFSFFVGISAKKISKKEEYEQAF
                     KSFHNFILIFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYMA
                     MFIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(6653..9022)
                     /locus_tag="SB815_000059"
     CDS             complement(6653..9022)
                     /locus_tag="SB815_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEG0905840.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIHWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGIKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(9038..10366)
                     /locus_tag="SB815_000060"
     CDS             complement(9038..10366)
                     /locus_tag="SB815_000060"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG0905841.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLIDDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEAIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ISHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDAIFKRTFK"
     gene            10444..11346
                     /locus_tag="SB815_000061"
     CDS             10444..11346
                     /locus_tag="SB815_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG0905842.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNKILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILIAKNKKAQIDLKSLFEKKLVQKEYLALAHGKIE
                     ENFIVDKAINLTKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKQQIESILDEKLNPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFDINSKINIKEIFNNSIK"
     gene            11458..12336
                     /locus_tag="SB815_000062"
     CDS             11458..12336
                     /locus_tag="SB815_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEG0905843.1"
                     /translation="MKFVNFIQGQKHNLGVLNSSGKIVSFTDLGIETNDMNEFIIYFD
                     KFKHKLTDLDSKIAYEIPKENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATAPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            12400..13314
                     /locus_tag="SB815_000063"
     CDS             12400..13314
                     /locus_tag="SB815_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG0905844.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLAEQATVPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAIAE
                     FEKTLITPNSPFDRYLSGDQNAISAQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            13304..15054
                     /locus_tag="SB815_000064"
                     /pseudo
     CDS             13304..15054
                     /locus_tag="SB815_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
     gene            15160..15327
                     /gene="dba"
                     /locus_tag="SB815_000065"
     CDS             15160..15327
                     /gene="dba"
                     /locus_tag="SB815_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HEG0905845.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            15339..16865
                     /gene="dsbI"
                     /locus_tag="SB815_000066"
     CDS             15339..16865
                     /gene="dsbI"
                     /locus_tag="SB815_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HEG0905846.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMSTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(16886..17560)
                     /gene="queC"
                     /locus_tag="SB815_000067"
     CDS             complement(16886..17560)
                     /gene="queC"
                     /locus_tag="SB815_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEG0905847.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            17626..18852
                     /locus_tag="SB815_000068"
     CDS             17626..18852
                     /locus_tag="SB815_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HEG0905848.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            18944..19468
                     /locus_tag="SB815_000069"
     CDS             18944..19468
                     /locus_tag="SB815_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YagU family protein"
                     /protein_id="HEG0905849.1"
                     /translation="MKKYFQKRYTLAFFIGILAGIFGAIVKWGWEVPFPPRNPNVFWP
                     ADALERVTPPKIFLEQLGLPTDWTYMFSGMQMPLSIFIVHVGFSIIFGVAYCMIAEKW
                     HRITMWQGAVFGFFVYLFAHVIIMPLIAEVPPLSEIPFDEHLSEIFGHIVWLWGMEIV
                     RRDIRNRITKEIEE"
     gene            complement(19480..21156)
                     /gene="ilvD"
                     /locus_tag="SB815_000070"
     CDS             complement(19480..21156)
                     /gene="ilvD"
                     /locus_tag="SB815_000070"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEG0905850.1"
                     /translation="MRSDAIKKGHLRAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSRELIANSIE
                     TVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYESKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAKQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            21316..21963
                     /locus_tag="SB815_000071"
     CDS             21316..21963
                     /locus_tag="SB815_000071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HEG0905851.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVTAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            22028..22267
                     /locus_tag="SB815_000072"
     CDS             22028..22267
                     /locus_tag="SB815_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HEG0905852.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE"
     gene            22300..22875
                     /locus_tag="SB815_000073"
     CDS             22300..22875
                     /locus_tag="SB815_000073"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEG0905853.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(22876..24321)
                     /locus_tag="SB815_000074"
     CDS             complement(22876..24321)
                     /locus_tag="SB815_000074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEG0905854.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERILNYKEFTIPLDKKEQEVQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLVYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADMAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVEGVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAISKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(24324..26075)
                     /locus_tag="SB815_000075"
     CDS             complement(24324..26075)
                     /locus_tag="SB815_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HEG0905855.1"
                     /translation="MAGFQSPITINEAMQRIKNNEYLLPAFQREYVWEPWQIEELFDS
                     LIRGYPISSMLFWKVKDESKTAWKFYRFLEYYRESYHTHNDYFNTSNHKDFYAILDGQ
                     QRLTSLYFALFGNYDIHRSYNKWENNDRYFKICHFYFNLTQSKKPENENIEYEFLWLD
                     KLETKEQNIYIDKYQQKWFKCQYLYQYDSGRVRKIAKEFNLNENEEDRLDLLHQKIFD
                     KNLINFYLEEEQDPDKAVNIFIRINSNGEPLDYSDILFSIAIANWNKIDARTEINNLV
                     DKINENFDISKDLILKGFLYLFHNNIKFQINSFDKNFIESIEAKWEGIKNAFIETFRL
                     LRSFGFEAKTLSSNNAILPILYFIYHKNLTNNIVDSVKCNENRAIIKKWLLRAIILKP
                     FGGSSDTVLSNMRKAFIKDFKQNSGFFDREIELFPLEEIEKEAKYIQTIDEEYLENNV
                     IECRKNSPEAFAVLSLLYPNLDYKNNNFHKDHLHPESAYKEYEKLYKATDNCISFNIY
                     DSLPNLQMLDANENESKNNKPLKQWVNEKCNGNRKEFLGKHLIPDVDLSLENFNNFIE
                     ERKKIIIDKLKSILNKE"
     gene            complement(26085..30575)
                     /gene="gltB"
                     /locus_tag="SB815_000076"
     CDS             complement(26085..30575)
                     /gene="gltB"
                     /locus_tag="SB815_000076"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HEG0905856.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGTGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKLSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHITYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            complement(30709..32016)
                     /locus_tag="SB815_000077"
     CDS             complement(30709..32016)
                     /locus_tag="SB815_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HEG0905857.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALVAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSASLNDVTNTMYFAAICMIAGLFLALFVFYRKPREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT        10851 a         5767 c         4497 g        10941 t
ORIGIN      
        1 acaagatata atatactatt aataggattg aaaggcttga cttagggaag ataagttccc
       61 taagtttaga aatatttaaa aaattttaat attttaaaaa atactcttga atttttttag
      121 gatcacttgt ttttgtaagt gctaatataa gcaaaactct tgctttttga ggatttaaat
      181 cttcagcact aataaaacct aatttttcat ctgaatcact cacagcaaca caacctgcta
      241 caacccttga acttacaaca accttaagcc ctttttttaa aagctctttt aaaacatctt
      301 tttgattttt gtgtatactt cctgctccac ttcctgcaac aactatgccc ttagttccat
      361 gttcaaataa agcttttgca gcgacaccac taccatcatt tgaatagcta taaagaatat
      421 ctacttttgg caaacttgtg agtttgctta catcaaaagg agcgtttttt gtgtgagctt
      481 tagtaacatt attatagaaa aagactttac catctactat ataacccaaa tccccaaaat
      541 caggagaaga gaaagcatca acatttaaac tatgagtttt tactacgcct ctagcgctta
      601 aaattttatc atttatagct accataacac ccttattctt agcttcttta ttggcaacta
      661 atgccactgc attataaaga tttttcggac catccgcact tatagcagtt gatggacgca
      721 tagcgccaac tagaactacg ggcttatcac ttttaatggt taaatttaaa aaataagcag
      781 tttcttccat agtatcagta ccatgagtta tcaccacacc gtctatcccc tcagcaaaaa
      841 gcttagcaat ttttttagca agccttaacc aaatttcatc acacatattt gaactatcaa
      901 tatttgctat ttgctcccaa ctaatatctg ctaaatctct aatttgcgga actgctttaa
      961 ttaatacatc tatatcaatg gctccggccg tatatcctgt tgtagcaata gtgctatcaa
     1021 tgaagcctgc tatcgttccg cctgttccta aaatagcaat ccttgattta gcttttttca
     1081 tacatactcc tataaaaaga caacatataa ataatttttt aatctcttgt atattaattt
     1141 tttaatgtta ttaatgcaaa ttataagtaa aaatttttat aaaatctctt taacaacaaa
     1201 ctgtggagtt accattcccc taaattcatt cttagaaata cttccaagca aagaaatatt
     1261 ttgattcaat tctggctctt tatcaaaatt aaaaaataaa gcttctatgg ttttattttc
     1321 cttagttaaa acaagcttta agtgtttttc atctttacct agaagttttt tattttttac
     1381 acaaagattt tctaaaacaa aaaaaggtcg tggattttta tgtccaaaag gttcaaaaga
     1441 ttctaaaatt tcaagcattt caaaatcaat ttcgctaggt tctaagattc ctaaaatttc
     1501 atctgtatcc aaaaattcac tttcagaaat ttgcgaacat tcttttttga ttttattttt
     1561 aaattgttca aaattttcag agtttaaact gattccagca gcacctttat gaccaccata
     1621 attgcttaat atagaatttg tcttagaaat taaagctaaa atatcaatct tgccaacact
     1681 tcttgcgctg ccttttaagt gttcttcatt ttgagaaaat acaaaagcag gtttattaaa
     1741 atgtttagct aaacgacttg ccacaatccc taaaacacct tcatgccaat ttaaacccga
     1801 taccacaata caagaatcgt tttcatcgat ttgatttaaa ctatcttcaa aaagctgttt
     1861 ttcttcatct ttacgacttt cattaaaact aacaatttgc tctagatatt ctaaagcttt
     1921 attaaaatct ttagtgtgta aaaattcata agaaatactt gcatcatcca ttcttccagc
     1981 actatttata agcggagcaa ttaaaaatcc tatattatca agagcaaatt tatccttttg
     2041 ataataatgc ttaatagccc taaaagcagc ccttttagat ttgttaatat gatctatgcc
     2101 acgccttact aaagcacgat ttaaatctct aagttccatc atatctgcaa caattgcaat
     2161 cgccaaaagt tctaaaaatt tacacatgtc atatttaagc ttgcacacct cttttaaagc
     2221 cgctatcaaa taccatgcga cttgagctcc acaaatttca atttctggaa aatcacaatc
     2281 tttttgcttt ggattgataa tggcaaaagc atcaggtaaa acatcttgag gcatatgatg
     2341 atcagtgata atcaaatcta tatttttttc tttacagagt ttggctgctt caagagcagc
     2401 tattccatta tctactgtta ttattaaatt tacatcaagt tcgttgatga tctcagcatt
     2461 taatccatat ccatctttaa aacgatttgg aattcttata atataatcaa aacctatatc
     2521 atcgaaaaat tctgccataa taacacaaga aatgattcca tcaacatcat aatctcctac
     2581 tatggcgact ttctcatttt tttctacagc ttctttgatg cgattagctg ctttatatgc
     2641 atcctttaaa cagcatggca aaggcagatc acaaagtttg gtatgcaaat ctttttcaaa
     2701 gcgtgaagcc aaaatttttt taatttcatt tttattaatt atcttcatag tttatagctg
     2761 ccttgataaa actgcaaatc acaggattaa catgctcaag tcttgatgta aattctggat
     2821 gaaactgcac agccaagaaa aaaggatgac agttaagctc aactgcttca atcaatcctt
     2881 tgctttcacc acttacaatc aaaccgtgtt tttcaaaatc tgctctatat tttggatttg
     2941 cttcatagcg atgacgatgg cgttctttta cactctttac ttcattataa accttagcca
     3001 aaagggattt ttccttgata tcacatttat aagcccctaa acgcatagtt ccacctaaag
     3061 gagtttttgc agtacgaatt tgtttttctc catttgtatc cataaattca tcaatcaaat
     3121 aaaccacagg attttggcat ttttcattaa attcacttga atttgcatct ttaagtttta
     3181 atacatttct agcaaattcc accaaagcaa gctgcatacc taaacaaatt cctaaaaaag
     3241 gaattttatt ttctcttgcg tattgaatgg cttttatctt accttctaca ccacgatatc
     3301 caaatccccc agcaaccaaa attccactca catctttaaa tacttcagaa ctttccatat
     3361 tttcaagttt ttcactatct acccatttta actccacttt agtatctagg gctgcacctg
     3421 cgtgtataat agcttcagta aggcttttat aactttcttt taaatccaca tatttgccta
     3481 caaaagcgat tttaacttca ttgcttggag ctataactct ttttaccaaa gagtcccaat
     3541 tttccatatt aggttttaaa tttttcaaat ccaaaatttc agcaataggg cttaaaatat
     3601 cttgctttaa aaaattaagt ggaatttgat aaatactagc cgcatcaaca ctttctatca
     3661 cgcaattttt ttctaccccg caagaaatag caattttatc ttttaaatct ctatcaagag
     3721 ctttttcact acgacaaata atcatatcag gactaatgcc tatgcgtctt aactcgccta
     3781 cactatgttg agttggcttt gtttttaatt cccctgcagc cttaataaaa ggtactagag
     3841 taagatgaat attcatagca ttatttttac ccacttccaa acgcaaagca cgaatagctt
     3901 ctaaaaaagg caagccttct atatccccaa cagttccgcc tatttcaacg ataagtatat
     3961 ctttgccttc tcctgctttt ttaatgcgat ctttgatttc tcctactata tgagggataa
     4021 cttgaatggt tttgccaaga tattctccac gcctttcttt ttcaatcaca ctttgataaa
     4081 cccgtcctgt agtgaagtta ttatcttgag ataaactctc atccaaaaaa cgctcataat
     4141 gccccaaatc aagatccgtt tctgctccat catcagttac aaaaacctct ccatgctcaa
     4201 aaggactcat agtgcctgga tcaacattga tataaggatc agcttttaaa atactcactt
     4261 taagccctga attttttaaa agtgttgcga tagaagcagc ggctatccct ttacccaaag
     4321 aacttaaaac tccacctgtt acaaaaatat attttgtttg tttcattgac aataagcctt
     4381 atttttttat ctaattatag cttgataaaa ctttttattt cattagaatt ttaagtaaaa
     4441 aatgcaagaa ttacaaaaaa tatttttatc aaaaaaggaa taagcatgca aatcacttta
     4501 ctttttcaca ctccattatc tgtttgttct catgcaacaa gaacttgttg gcaaagcttt
     4561 gaaaaaggcg attgcggtgg cgaaaaagat aaagaactta tcgatcgcgt gggtaataaa
     4621 ttcaaacacg cttcaacctt agaacatcta aactatactt tttatataca aggaatttca
     4681 agagcttgct tacaagaagt tgcaagacac cgtcacacta gtcctagtgt aaaaagcacg
     4741 cgttatacct taaaagaact tcgcaatgaa gctgaattta aaataggaga ttttgaaaat
     4801 gcaagccgtt atcttgtgct ttgtggcaat gaagaggttg ataacgcaag tattaaagcc
     4861 ttagaaaatt tacgcactat tttacaaaaa agcattagtc tagatatagc caaatactgc
     4921 ttaccagaaa gttataaaac cgaacttaca ctaacgatta atgcaagaag tttgcaaaat
     4981 ttcatatctt tgcgtagttc aaaatcagct ctttgggaga ttagaaattt agcaaatgct
     5041 ttatttgaag ccttaccaca agaacacaaa tttatatttg aacattgcct acataaagat
     5101 atagaataaa tcatactaat tttatcttat ttaaaatatt tttatgctac catttataaa
     5161 atcaagcttt atgcaagtat attttcatat accttgtgct tgattatagt ttcttataag
     5221 gactttttat ggataaacaa ttttttcaag attttttaat gctttcacaa gctcatacta
     5281 tagctactct tgctatgctt tgtgttgctt tttacgcatt aaaaaaaatg cgggatataa
     5341 aaatcaattt ttctcttcgc atgctatttg cgcttttaat gggtttgggg tttggttttg
     5401 ctttgcaata tttggcaaat tttccagatg ctaaagaagc aagtaatatt ctttggtata
     5461 gtgaaacaaa acattggttt gcatttgtaa gttctgtttt tgtagctttt ataaaaatgt
     5521 tggttgttcc ccttgtaagc atttgcatta taaaagtaat tatagaaatt gataaaaata
     5581 tcaaaatatc ctccttgctt ggaataagtc ttttttggat actctttagc acagccatag
     5641 ctgcaacctt gggtatattt ttaggttata gttttgattt aggaagtaat tttgctatac
     5701 atgaaggaga taaacaaatt cgcgaaattc aaactttttc aaatattata ctagggctaa
     5761 tacctagcaa catcattaca gctattaata aagaaaatat tatagctatt gtcatttttt
     5821 ctttttttgt aggaattagt gctaaaaaaa tttctaaaaa agaagagtat gaacaagcct
     5881 ttaaaagttt tcataatttt atcctaatct tttataatat tatgatgaac atgactgcta
     5941 cagttattag atttatgcct tatgctgtag tttgtatgat ggctaatgtg cttttaagca
     6001 atggttttga agctatcaaa acagctgggc tttttataat gcttatttat atggctatgt
     6061 ttataatgtt tggggtgcat tttttacttc ttgcttcaca agggctaaac cctataaaat
     6121 atgcaaaaaa agcatttcct gtatggttat ttgcatttag ctcaagatct tctttgggca
     6181 ctttgcctat gaccacttca actttgcaaa ataaatttgg agttaattca gctatagcta
     6241 attttgtagc atctataggt acaacaacag gacttaatgg ttgtgcagga tattttccag
     6301 ctttagcggc agtttttgta gcttttgcta cacatacaca tattgatttt acatttgctt
     6361 taatgatagt tttggtagct gttattggat ccttgggtat agctggggta cctggaagtg
     6421 caactatggc agcttctatt atgctagcag ggattggatt tggtaataat tttgtcatgc
     6481 taagtttgat tttagccata gatcctatta tagatatggc aagaacagca agcaatgtct
     6541 caggagctat gacttcggca ctttgtactg caaaaaatct aaaagctcta gataaagaaa
     6601 tttacaattc ttaatctttt aaaacccaat gcttttcatt gggttttagt atttattggc
     6661 aaccttcaca ttctatgcta cgatctgcaa cattaacttt ttcactatca gggctttcgc
     6721 ttcttaaata ataagtagat tttattccaa gctcccaagc gagttgataa atttcattta
     6781 aatatccccc acttgcttta tcaagtgata aaaagatatt taaactctgc ccttgatcga
     6841 tccatttacc acgcacagca gcagccttta caagaatttt ttgatcaagt tcgtaggctg
     6901 gagtatagta ttgccaagta tcaaggctta aatttggcac aacaacaggt atcataccac
     6961 ttaaattttg ttcaaaccac tttcttttgt aaacaggttc tatagtctgc gtagtaccca
     7021 ccaagataga aatagaagaa gtaggcgcaa tggccatcaa ataaccattt ctcataccat
     7081 cttttttaac tttttctcta agtttaaccc agtcgcattc actttgatca aataagcctt
     7141 ctcttaaagt taaagcttta gccttaggac ttgctacatc aataggaaaa atccccttgc
     7201 tccaatttga tccttcaaaa tcttcataag aacctttttc aagagctaaa tttgaactcg
     7261 cattaatagc ttcaaagcta atttgctcca taatctcatc gattttattt aaatgctcat
     7321 cgcttcccca atgaatctta gcctcagcaa gcatttgtgc ttcacccatc actccaagtc
     7381 ctatggcgcg agattttaaa tttgtatctt ttacttttct atgaggataa aaatttaaat
     7441 caattacatt atcaagcata cgaatagccg ttggcacaac acgctctata tcttctttag
     7501 tatatacttt gctaagattt atacttgcta aattacaaac ggctgttttt ccatcatttt
     7561 tatatttttc cactatataa actttattac catcaatgct atctaaagtt gatatttttt
     7621 tggctggttt ttcatatccc ccatcgatca caaccttttg ctcttcatca aaatgaagct
     7681 catctccatt ttcaaaaact actttaattt gataataatt tggctcggta ttttgaaaaa
     7741 tttcagtaca taaatttgaa cttctaataa ttcctacatg agcatttgga tttgctctat
     7801 tagcactatc cttaaaacat aaaaatggca agcctgtttc aaaataattt agcaaaattt
     7861 tcttccaaag ctctttagct tctacgattt ctttggtaat gctttcatct ttttcatatt
     7921 cttcatagcg tttttcaaaa gcctcgccat ataaatcaca caaatccgct gtatctgcag
     7981 gatcaaaaag agtccattta tcattagctc ttactctctt cataaaaaga tcattgatcc
     8041 ataaagcagg gaaaagttca tgagcacggc gtctttcttc acctgaattt ttacgcaaat
     8101 caataaaatc acttatatcc atgtgccaag gctctatata aaccgctata gccccttttc
     8161 tagtacctag ttgatctact gccacggcaa tatcgttggt aattttcaag aaaggtataa
     8221 tccctcctgc ggcattttta tgcccatcta tgcttccacc catagcacgc actttagacc
     8281 aatcccaacc tataccacca ccaaatttag aaagtaaagc catttcttga taagaatcaa
     8341 aaataccttc aatattatca ggggttgatc ctatataaca agagctaagt tgatggcgcg
     8401 ttgttcttgc attagataaa gttggagttg caagcatgag ttcaaattta gaaataagat
     8461 cataaaattt ctttgcccat tcttggggat taaattcatt ctgcgctaaa aacatcgcaa
     8521 tggccataaa catttgttga ggaagttcta taggcatacc tttactatct ttaatcaagt
     8581 atctatcata taaagtttta ataccaagat aagtaaattg catatcgcgt tcaggcttaa
     8641 tataagcatt taaatcatct aaatcgtatt tttctttaag accaagtaaa attcttcctt
     8701 ctttttcgcc cttttcaaaa tattcacgca aatgattata gcgattcata ccattaactt
     8761 tcttatacaa atcaaataaa aaaagtctag ctgcaacaaa ggtccaattt ggacaatcaa
     8821 tatctatctt atctaccgcg gttttaatta aagttttttg aatttcttca gttgaaattc
     8881 catcgcgaaa ttgaatcttt gcatcaagtt caagttcgct taaattcaca ccttctaaat
     8941 cttttacagc atcagaggtg cattttttga tcttagaaac atccaattct tctgtacgac
     9001 catttctttt aataactttc attgccttcc ttgcttttta tttaaatgtt cttttaaaaa
     9061 ttgcatcaac attttttgta tagtagttat aatcgaaaca ttttcttaca tcctcttcgc
     9121 tcaaactttt tcttaaatct tcatcgctta aaagcgctaa caaaaacaaa ctttcatttt
     9181 tttcattgat agcagccttg ccattttgca aatctgccca aactttcata gcgtttcttt
     9241 gaactatttt ataagcttct tcacggctaa tgcctttaaa tggaagttct aaaagcaccc
     9301 tccctgaaaa tacaagcccg cctgtaagat ttaaattttt catcatattt tcaggataaa
     9361 ccaaaagctt atcaatcaaa tttgtaagac gcataagcat aaaatcagcc gtgataaaag
     9421 catcaggcaa aataaatctt tcaacactag aatgagatat atctctttca tgccaaagtg
     9481 caacattttc caaagctgga gttacaaaag atctaagcac acgacaaagt cctgtgatat
     9541 tttcacttaa aacaggattt cttttatgtg gcatagctga acttcctttt tgtcctacac
     9601 taaaatactc ctcagcctca taaacttcag ttctttgaaa atgtcttatg gctacagcga
     9661 tttgctcaca acttgaagct aaaatcgcaa tagcagaaat aacctgagca taacgatctc
     9721 tttggatcac ttgatttgaa acaggagcgg ccttaagacc taaattttta caaacttctt
     9781 cttcaaattc taaaggagca tgagcaaaat ttcccattgc accgctgatt tttccatagc
     9841 ttatcacttc ttttgcatgt tctaaaagct cttttgcatg cgaaatttca tcataccaaa
     9901 tagctaacac taaaccaaaa gtaataggtt ctccatgaat tccatgactt cttcctacca
     9961 ttaaggtgtt tttatgctcc aaagcacgct ttttgatcgc ttctaaaagc aaagaaacat
    10021 cttctaaaat aagctccaaa ctctctttta tctgtaaagc aacagctgta tctatacaat
    10081 cagaacttgt cattgcataa tgcacaaaac gactctcttc tcccaaactt tcacttacac
    10141 ttgtaagaaa agctataaca tcatgttttg tggttttttc tatttcgtct attcttgcaa
    10201 tatcaaattt tgcattttta agaatttttt cgcagtctgt gtcatcaatg agaccgagtt
    10261 tgttccaagc ttttacagcg gctaattcta cttttaacca cgcatcgtat tttgcttgca
    10321 tgtcccattt tttagccatg atttctctgc tatatctttc aaccatcttt gaaacctttt
    10381 tagctataat tttatatttt aaaaaacaga aattatatca aattatccta agaaagttat
    10441 taaatggcct acataaaaat aaaactctca aacaatggaa aaaaggcgtt tcaagtcctt
    10501 atggaaaatt taaaaattag cataaatgaa gcacaaaaac tcatagacaa aaaaagactt
    10561 ttttgtgatg gaattttagt agaagaaaag aataaaattt taaatggttt agtagagctt
    10621 atagtctatg aaaacaatcc caaaggagta gaaattgtct ttgaaaatga agactttgcc
    10681 atacttgaaa aagaaagtgg gatcttaagc catccaaatg gtagacattg caaatacagt
    10741 cttagtgatg aaatttggca tctttgggga aaagaagctt gcgtagcaca caggctcgat
    10801 aaagaaacga gcggacttat acttatagcc aaaaataaaa aagctcaaat tgatcttaaa
    10861 agcttgtttg aaaaaaaact agttcaaaaa gaataccttg ctctagctca tggaaaaata
    10921 gaagaaaatt ttatagttga taaagctata aatttaacta aaaactacga tgatgtaaaa
    10981 acaagaatgc aaatttgcaa agaaggaaaa caagctatca ctgaatttga aattttagaa
    11041 tactttccta aaatcaacgc tactctttta ctttgtaaac ccttaacagg cagacaacat
    11101 caaataagag tgcatttaca ctataaaaat cataccattt taggcgatcc actttatggg
    11161 cttagcaaac aacaaatcga aagtatttta gatgaaaaat taaatcctaa agaacgctta
    11221 aaacttacag gtgccttgcg tttgtgtttg cattcttatc gtttgaaatt tcaatataaa
    11281 aatcaaaatt ttgatatcaa ctcaaaaata aacataaaag aaattttcaa caattccata
    11341 aaataaaatg atgtttcact acgctacaat caatcacttt tttaccaaat tttaaaacaa
    11401 aaaaataatt cttgctaaaa ctttaagtat aattaaataa aaaagcgaga ttttccaatg
    11461 aaatttgtta attttataca gggtcaaaaa cacaatctag gagtactaaa ttctagtgga
    11521 aaaattgtaa gttttactga tcttggcatt gaaactaacg atatgaatga atttattatc
    11581 tattttgata aatttaaaca caagcttaca gacttggatt ctaaaatagc ctatgaaatt
    11641 ccaaaagaaa attatctagc ccctattata gaacctcgcc aagatattat atgtcttggg
    11701 attaattttt tagatcatgc caaagaatct gccaaattta agggtgaaaa atttgaagaa
    11761 agagaatatc ctgtatattt tggaaaacgc tgcaatcaag ctacggcacc ttttggcgat
    11821 atacctttac atgcagatgt aacttctcag cttgattatg aatgtgagct tgcatttatt
    11881 ttaagtaaag atgcttataa aatcaaagct aaagatgcaa aagattatat ctttggctat
    11941 actattatca atgaaatttc agctcgcgaa cttcaaaaac gccacaaaca attctaccga
    12001 gcaaaaagtc ttgaaggtag cactataatg ggaccttata tcacaagcgt agatgaaatt
    12061 tcttatcctc ctaaactcca acttcaaagc tatgtcaatg atgaactacg ccaaaactct
    12121 aacactcaat tgtttatttt tgatattgct tatgtcttag aagaacttag cgcaggcatg
    12181 cttttaaaag ctggaagtat tatatctatg ggaactccta gtggagtagg tatggggtta
    12241 aatccaccta cttttttaaa atcaggagat aaagtacgtt gcgtcataga aaatttagga
    12301 gaactttgca ataaaataaa aaatatcaat tattaaacaa tttactaaaa ttacactata
    12361 atggcatttt aaaaacttaa attaaggcag aaatttacca tgaaaaaaat aataatgatt
    12421 ttatgtttat cttatgcaaa tatagtcttt gcagtagata tgataacccc tattccaaat
    12481 tccatctctt atgataaaga aaaagctaaa cttggaaaaa gtctttatat ggataaaagt
    12541 ttatccaaag atggaaaagt ttcgtgcaat acttgccata ggcttgatca acacggcgtt
    12601 gatggacttg aattttcaat aggagttgat aatcaactcg ataaaccctt taacactcct
    12661 acaaccttta attctgtatt taattttgtg caattttgga atggtagagc taaagattta
    12721 gcagaacaag ctacagtacc ttttttcaat cctaaagaaa tggggctaag tcctgaactt
    12781 cttttacaaa aagttaattc aaatgaaaat tatgtaaaaa cttttaaaaa actttatgga
    12841 gaagttacgg tagaaaacat agctcttgca atcgccgaat ttgaaaaaac cttgatcact
    12901 ccaaattctc cttttgatcg ctatcttagc ggggatcaaa atgctatttc agctcaagct
    12961 aaaaaaggtt acgaagattt taaagctaat ggctgcatct cttgtcatca aggtcaaaat
    13021 ataggtggga atatgtttca aaaaatcggt atttttgaag aatacccaaa ccaagaagat
    13081 ttagggcgct atgaaatcac aaaaagagaa gctgataaaa tggtatttaa agttcctagt
    13141 cttagaaata tagccaaaac cgcaccttat tttcatgatg gatctatacc tactttagat
    13201 gcttgtgttc agtttatggc ttactatcaa ctaggaaaat ttttagatca agaaacagtt
    13261 gacaatatag ttgcattctt agaaagctta acaggagaat atcatgacaa ataaaaaaag
    13321 ttcatttttg ataaaattta ttattttatc tacactagtt ttagctttca ttcttgtttt
    13381 attaggtatt atttttaata actattcttc atctaaagat aataaagaat tgataaacat
    13441 agttcaacaa ctagaaattt cagatgaaaa aatcaattct gtttttcaaa atagttttaa
    13501 ttttatcaac tacgatccaa gtgttcaagc aataaaaaaa atgcaagaaa actttacaaa
    13561 acttaaaact tttgggattg acataaacaa agcagaagaa atttttaatg ccaaattaat
    13621 ccagcttaat tattttaaat ccgcaaattc catagcagta aattcaaaac tttatttatt
    13681 tgaactagct aaaaattatt ttgaagaatt ggaacaaaac catgaaacaa ataaaaacaa
    13741 ctataaaaca ctgaaaatat tttacaaaaa acaacactaa atcaactcaa caatcttatg
    13801 aaagaaatca aaaatgatac aaaaagtgaa aatttacaac tttttttaaa acactataac
    13861 atgattgtaa agcaaatttc tattatgcaa gataattctt ctatttatga gaataattct
    13921 ctcatgaaag agttaaaaca acttaacact tttacccaaa atactataga acaatctaat
    13981 ttatttaaat tttatatcgc tttagcagta tttggaatta ctcttgtatt atttgtattt
    14041 tttattttat taacactaaa aaaagtcatc atgccaattc atactttaga aaaactaagc
    14101 gctaatttag ctagcaaaga agccaatcta cactctcgtt taaatataga tccaaaaagt
    14161 gagcttggac aaagtgctca atatattaat tcatttattt ccaccgttca aaactcaatc
    14221 atagaagcca tagaaaatgc taaatcaagt catcaaaatt cacaaaaact caaaaacaac
    14281 tctatgatgc ttgaaaacag ctctaattcg caacatgaac aaattcaagg agttaaagaa
    14341 atcactcatg ttttagatga tcatatcaat cttgcgggaa atttagcaca agaaagtata
    14401 gaaaatatgc aagatatgca catactaatg gataaagtag aacttactct atctgaactt
    14461 gtaaatttaa taaatgaaaa caatgaaaaa gaacaaaata tagtagccaa tatggacaat
    14521 ctaacccaaa gtgcggataa tattatagaa atcacaaact ccattaaaga catagctgat
    14581 caaactaatt tacttgccct aaatgcagct attgaagctg caagagcagg cgaacatggg
    14641 cgtggatttg ctgttgtagc cgatgaagtt ggacagcttg ctgataaaac aagtaaatct
    14701 cttttaaaca tcaatgctac tgttaatact atagtccaac aaatcaatga caacaaagcc
    14761 ttaatggatc ttatccatga ttctatgaaa gaaacctctt caaaaaccaa tgatttacaa
    14821 caagaacttg taaattctat gcataaattg gaaatctcta tagaatcaac ccaaaccatg
    14881 aaagataaaa gcatggaagt aaaagataaa atgcttatct taggaacaaa tatagataaa
    14941 gttaacgaac ttgcaaattc tgttaaagat ttatcatgtg aaatcaataa tatctctcaa
    15001 aatgttctaa atggtgcctc taaactctcc gaaaaattaa gtagctttca gtaacttttt
    15061 tcacgttaat ttaacttaac gtgaaatttc aataaaaatt ttatttttaa tttatgtttt
    15121 tcaagtaaaa ttagcagttt ttatttcaaa ggagatacta tggagtttct tgaactttta
    15181 ttagttttaa tcgccttgat actgattatc aaaaaaccag aaaaagaaaa tttggctttt
    15241 ggtttggtaa tggtagcttg gcttttaatg gtttttttct atgttggcca caaaacaggc
    15301 gcactattaa caataatgaa tctgtaagga agggctaaat gaacgaaatc aataaaacaa
    15361 aaaatttcta cacactaatg tgtttagcag gctttttgat tatactcttg cctgtaggta
    15421 ttgcaaattt gatatttggt tatatgttgg gcgatagtcc ttgcacgctt tgctggggac
    15481 aaagagaagc aatgatcttt atcggtgtaa tggcgctttt cattgttcgt tatggtatga
    15541 aaggtaaata ccttgctgct cttttaatca tgacagcagt agggctttat caatcttttg
    15601 ctcactatgg taatcacgct catagagatt tagatcaagg ttttggttta gcagtttttg
    15661 gtatccatac ttatttttgg gctgaagtag tattttgggc tgttgtattg ctcttaggtg
    15721 tgatttttgc ttttgctcct aaatttaatg cttttgaagc tgaactaaat ggagaaaagt
    15781 ttagaaaata tactaaattt agctttgcag cagttttaat cagtgctatc atcgtagcat
    15841 caaatgtttt ccaagccttt gttagcacag gtattcctcc ttatgtagga caaggcgatc
    15901 ctgtaagatt tagtttaaat ccaaaataca tcatttggag taaagaaggt tggaatggtt
    15961 tatggcaaaa tatttctttc ttaggaaaac gcgatgttaa agctcctgat tatgcttttg
    16021 cacctgcaag tgaaaaactt ggcataaaat ttgataatga tatcaacaat gctccatttg
    16081 caaaaatcaa tgatgagctt aaaatcacaa atgaacaaac cataaatttt gacaaagcca
    16141 tcaatactct tgattatatc aataacgaat ttgtagcaag ttctaaatgg gatgtagctt
    16201 tcttagataa taattttagc gttaaagaag gttttgaact tgatccttat ttttcagctt
    16261 ctatcgatcc aatcatcggt atcatacctt atatgaacga taaattcatt cttatgggct
    16321 caaacaaatc tttcttaaga tttgcaaaaa atcctaatgc aagtgaagaa gatatcgcta
    16381 aacaatacgc tgactttgta aaaggcaatg ataaatttaa aggtcaaggc gaaagtttag
    16441 gtcgcggaag acttgatact gtaagagcga aatttaacca tgtagcaagc atgagcacag
    16501 atggaaatta tctttatctt gcaactgttc caaacaacaa agacgctaaa acttttgtaa
    16561 tctctaaagt ttctttaaaa gatcgtgttc tttcaggaga atttactcca aaagcaaatc
    16621 ttaaagaagg taaaacttta ggcgatcttt atgtaacttc tatgactttt aaagatgggg
    16681 aaatttatgc acttagcaaa aatcacaatg tgattgccgt aattgatcca gtcaaagaag
    16741 aagtagtgaa aactatcgct ttcccaagct ctatcactaa tgctagaagc attttcttta
    16801 aagatggaaa aatcaatatt ctttcttatc aagatggagc aaacaagctt tatactttaa
    16861 actaagcttt aagtcctagt gaaaactagg acttatattt aatcttatct ttaaatcctg
    16921 ctttttcaaa acctcttaaa cgaagcaaac aactatcgca ctccccacaa gcttcatctt
    16981 cactctcata acaagaccaa gtaagttcta aaggtacatt ttcttttaag gctagttcta
    17041 caattttagc tttgtttagt ctaacaagcg gagtttttat acaaactttg aaattcttac
    17101 tcgtaccttc attgataaat tcttgtgcct tttgtataaa ctcatcagta cagtcaggat
    17161 aaccactgcc atcttcttct accaccccta taaaaatact ctcacaattt tccttttcag
    17221 ccaaagatcc tgctatactt aagaaaattc cattgcgaaa aggcacataa gtgataggtg
    17281 gagtatcgct tgtacaaagc tcatttttag ggatgtctat acttttatcg gttaaggcat
    17341 tgccccctat atccttgata aaactcacat ctaaaatata agatttttct acttttaaag
    17401 ccttgcaaat ttgcttaaaa cattcttttt ctttttcttg agtgcgttgt tcatagtcaa
    17461 aatgcaaagc gatgatttca taaccttctt ttttggccag ataagcacac aaagtactat
    17521 ccataccgcc acttatgata caaagtgctt ttttactcat ttttatcctt aaatttgcta
    17581 taatttcaca attttaacga aaatttttaa aaaaaaggca aaagcatgat aaacataaaa
    17641 ctcatagaac acatttttaa agccgcttct atcagtcgtt ggaatgatta tccaagaatg
    17701 gcaaatttgg ttgaacttga caaacaagct cataaattca tcatcgcata ttttatcgct
    17761 aaaatggaaa aagatgtgga tatgagagtg attatagaag ggggaatttt tgagttttta
    17821 agtcgtgttg tggtaactga tatacgccct gatgtgtatc atgaaatcgt gcgtcaaaaa
    17881 aaagctgaag ttaatgcttg ggttttaagc aaaatcgaac ctatgataga agatatagaa
    17941 gatggggaat ttctaaagcg ttttgaagcg tatttaaatg gtaatgctta tgctaaagaa
    18001 agacttatct taaaagcagc ttcatatttt gctacaagat gggaatttaa catagtttat
    18061 caaacctcag cttttttaaa tgatattgat gagattaaaa acaaagttga agaagaatta
    18121 gaagattact atgagcttat aggagctaga aaaatcgctt taaatcaaaa aatagccaaa
    18181 attattgatc ttagcggaag acttcgcttt caaaaacgtt gggctcaaac tccacgcata
    18241 ccagaaaccg cggttttagg acatatgctt gtggtggcga ttttaggata tttttactca
    18301 ctaaaaatca aggcttgcga taaaagactt gagaataatt tttattgtgc tttgtttcat
    18361 gatttgccag agtctttaac acgtgatatt atcagccctg taaaatacgg cattgatgga
    18421 cttcatgata tcataaatga ttatgaaatg aaacttatta atgaaagaat tttacccttt
    18481 gtacctgagg gtttaagggc tgagttttct tatattttag gcattagaga aggtagaaac
    18541 ggtgagtcaa attttgtaaa aaatgagttt gaaaatcgca cttataaaaa tgctaaaatc
    18601 gagctttgca gcggaagttt aagctctttt aatgaaaatg aatttggtgc tatagatggt
    18661 aaggcgctta aatactgcga taaaattgct gcttatatag aagcaggact tagtataagt
    18721 tatggtgtaa agtctaaaga acttgaaagt ggttttttag gaatgcatga gttttttaaa
    18781 gaaaatccta ccatagatgg ggtgaatttt tttgaaattt gcgaaagttt aagagaatat
    18841 tttaaaattt aaataagatt tttatactcc tattttcaat atgttttaaa taaaaatatt
    18901 ataaattcaa attttatttt gtataaaaca taaaggagtt attatgaaaa aatactttca
    18961 aaagcgctat actttagcct tttttatagg tatattagcg ggtattttcg gagctattgt
    19021 taaatggggt tgggaagtac cttttcctcc aagaaatccc aatgtttttt ggccagcaga
    19081 tgctttagaa cgtgttactc cacctaaaat ttttctagaa caactaggct tacctactga
    19141 ttggacttat atgttttcag gtatgcaaat gcctttgtca atttttatag tacatgtcgg
    19201 tttttctatt atttttggag tggcttattg tatgatagcg gaaaaatggc accgtattac
    19261 tatgtggcaa ggtgcagttt ttggattttt tgtttatctt tttgcccatg ttattataat
    19321 gcctttaatt gcagaagttc caccactttc tgaaattcct tttgatgaac acctgtctga
    19381 aatttttggc catattgttt ggctgtgggg catggaaata gttcgtagag atataagaaa
    19441 tcgtataacc aaagaaatag aagaatgaaa ggaagccttt cattccatat ctaaaaccgc
    19501 acctttacta gcattgctaa caagtttttg atacattcta agccatcttg aagacacctc
    19561 tttttgaggc aatgcaaatt cttttttacg tttagcaatt tcttcttcac ttacatttgc
    19621 atggatagta taagcatcta catcaatttc tatttcatct ccatctttta aaagtcctat
    19681 aagaccacct tcagctgctt caggggaaat atgaccgacg cttaaacccc ttgtagcccc
    19741 actaaaacga ccatcggtga ttaaagctac atcagcacct aaacccatac ccattaaaag
    19801 tgaagtagga cttaacattt cttgcatacc aggaccccct tttggacctt catagcgtat
    19861 tacacaaaca tttccttttt gcaccttgcc tttaataatg ccttttatag cttcatcttg
    19921 agagttaaaa caaacagctt tgcctttaaa ttttctttct ccgattattc ctgcggtttt
    19981 tataacgcaa ccttgcttgg ctaaatttcc aaacaaaatg gcaagcccac ctacttttga
    20041 gtaagcatta tctactttac gaatgatatt ttcatctttg attttggcat tttttaagcg
    20101 ttctttgaga ctttctcctg taatggtcag tgcatcaagt tctaaaatat gtccttgtct
    20161 gcttgaaatt tcagccataa ctgcactcac accgcctgct ttgtggatat catccatata
    20221 aacactattt agcgatgggg ctatttttgc tatgtgtgca actttgcttg agatgaaatt
    20281 taaatcttta atatctagtg ctacccctgc ttcacgcgaa atggcaagca tgtgtaaaac
    20341 tgtattgcta cttccaccca ttgccatatc tactaccata gcattacgca cagctttttg
    20401 agtgatgata ttacgaattt taaaacgttc atctagggcg atttcacaaa tacgacgcgc
    20461 tgcttttctt aaaagctctt ctctttcttt acttaaagct aaaatggttc cattgccttc
    20521 tagtgctata cccatagctt cgcataaggt attcatagaa tttgctgtaa acattcccga
    20581 acaagatcca ccacttggac aggctgaaca ttctatatct ttaaattctt cttcactaat
    20641 ttttttggat tcataagccc ctacagcttc aaaaacagag ctaaggctga tcttttctcc
    20701 ttttttggtt actcctgaag ccataggccc accacttaca aaaatggttg gaacattgac
    20761 ccttaaagct cccattaaca taccaggagt aattttatcg cagtttggaa tacagattaa
    20821 agcatcaagt tgatgagcat tcatcaccgt ttcaatagaa tttgcgataa gttcacgact
    20881 tggtaaagaa taaagcatac cttcatgtcc catagctata ccatcatcta cgcctatggt
    20941 attaaactca aaaggtacgc aaccattttt gcgtatctca tctttaatga ttttagcata
    21001 atcatttaaa aaataatgcc ctgggattat atctatatag ctatttgcta cacctataaa
    21061 aggtttgtca aaatcttcat ctttcaaacc acaagcacga agtaaagaac gattaggtgc
    21121 tcttaaatgt ccttttttta tcgcatcgct tctcattgta actcctgata ataatttttt
    21181 aaaattatat ttagcaaagc ttaatttttg tgaaatttat tttgatatac attttcataa
    21241 atgataaaaa ttattaattg acaaaaatat ttttttataa tacaatactt tttgataatc
    21301 aaaaaaggag tcaaaatgag acaatatgaa acctataaat gccaaaaatg tggcaatgaa
    21361 gtagaagttc aaaatgtagg tggcggtaag cttagttgtt gtggtgaaga aatgaaatgt
    21421 atcactacag atttaactgc agtaaattta atgaaagctt ttgcaggcga atctatggca
    21481 agaaacaaat acgatttatt tgctgatgta gctgaagaag aaggttggca tgcggttgct
    21541 agacatttta gagaagcggc tgaaaatgaa aaatggcatg caagagcaga atttaaagct
    21601 tatcatgaaa tcgttgatgg caaaccttta gaagtaacta caaaaaacct agtaactgct
    21661 gcagaaggtg aaaactatga gcacacaact atgtatccaa attttgcaaa aatcgctgaa
    21721 gatgaaggca aaaaggctat agcgagatta tttacagcta ttggtaaagt agaaatcgaa
    21781 cacgaaagag aatatctagc gcttaaaaaa atgctcgaag aagaagaatt ttttaatagt
    21841 gaagtagaag aattatgggt ttgtgaagta tgcggacata tacatcgtgg caaaaaagct
    21901 ccagcagcct gtcctttatg taaagcacca aaagagtatt ttaaacgcga atttttgggt
    21961 taagttaaga aattcttatc ctttttaaga taatattata attatttttt aataaaagga
    22021 taagaaaatg aaaaaattac tatttttatt ttttgcttta acggcttttc tctttggtgc
    22081 tgtaaatatc aacactgcaa cactaaaaga attaaaaagt ttaaatggta ttggcgaagc
    22141 taaagctaaa gcgattttag aataccgcaa agaagcaaat tttacaagta ttgatgatct
    22201 taaaaaagtt aaaggcatag gtgataagct ttttgaaaaa atcaaaaatg atatcacaat
    22261 agaataaaag ggcatttttg cccttctttt tagaaaaatt tgaaaacttt atttgacaca
    22321 aaagaacttt taaacgaatt tgatataaat ttaatcggta ttgatgaagc aggacgcggt
    22381 gctttagcag gtcctatgat gatggcagct tgcaaactga acaaacaact tgatgggttg
    22441 tgtgattcta aaaaactaag cgaaaaaaaa cgcgaagaac tttatgaaat catcatcaaa
    22501 aattcaaact atctcatact tgctttttct tcagaacaaa tcgacgcact aggcttaagc
    22561 acttgtttaa aaaaaggctt aaaacttata aaaaagcatt ttaaaacaga aaataacttc
    22621 ttatatgatg gaaacaccaa cctaggtata aacgggataa aaacacaaat caaagccgac
    22681 actagcattt tgcaagtaag tgcagctagc atactcgcaa aagttagtaa agatagagtg
    22741 atgaatttct tagctaaaga ctttccttgt tatgaatttg aaaaaaacaa agcctatggc
    22801 acaaaagctc ataaagaatt tatagctaaa tttggaattt gcaaactcca ccgaaaaagt
    22861 tttaaacttt tatgattatt ttgctaaatt ttgatgcaaa ctcaaagcac attctatacc
    22921 atcttttata gcccaaacaa ctaaagattg tccttttcta gcatctccac aagcaaagat
    22981 ttttttatga gtggtttgga aattttctgt gcttatgttg tttttctcat ctaatttcac
    23041 tccaaaattt ttagagatag cttcttcgca cccgctaaaa cccatagcta aaagcactaa
    23101 atccgcttta taagtttttt tagaatttga aatttcgaca tttatagctt tgccttcttt
    23161 aaactcgcgt tttaaatcat ttgcttcaac accttctaca tgagtttttc ctaaaaattt
    23221 ctttgtcatt ttttgatatt ccctaggatc tttgccatat acagcaatgg cttcttctaa
    23281 accataatca gtagtaaaaa tgtcagcttt taaaggccaa ggattgtttt ggcttctttg
    23341 caaaggtctt tttggacttc tttcaaaacg cactatagat ttagcccctt gtcttgtcgc
    23401 tacagcgata caatccacac ttgtatcccc gcttcctata accaagacat ttttaccttt
    23461 ggccatatct gcacccttgc ctgtttttaa caaagttttg gtattttgcg ttaaaaaatc
    23521 aagggcaaat tcaacccctt ttagctttct accttctata tcaagatcta taggcttact
    23581 tgctcctgta caaagcacca aagcatcaaa ttcttttaga agttttgaaa ccttatcttt
    23641 gctgtctata ttttcattca ctttaaattc aatcccactt tttttaagca aatccacccg
    23701 tctttgaact atacttttat caagcttcat atcagggatg ccatacatca aaagtccgcc
    23761 tattttatcg cttctttcaa aaacacttac tttataacct agtgaattta aagtattggc
    23821 acaagcaagc ccagcaggcc cacttcctat gacagcgatt tttttgccat tgtattgctt
    23881 aggtttattt actcttacta aattttcctt aaaagcattt tctataatgg ataattcatt
    23941 attttttatg ctcacactaa caccatttat cgcacacaca caagaatcct cacaaggagc
    24001 agggcaaaca cgaccggtaa attcaggaaa aggattggta agatcaagtc tttcataagc
    24061 ttctttccat aaagaacgat aaacaagatc gttccattca ggaatgagat tgtttaaagg
    24121 acagcccaca tcttttcctt cgctcatcac acccgtatga caaaaagcta ccccacaatc
    24181 catacatcgt ccaccttgaa cttcttgttc ttttttatcc aaaggtatag taaattcttt
    24241 gtaatttaaa atcctttctt taggagcaat ttttttaaaa tccattcttt taaagtccaa
    24301 aaaacctctt gcatttccca tttttactcc ttatttaata tactttttag cttgtctata
    24361 ataatttttt ttctttcttc tatgaaatta ttaaaatttt ccaaagataa atcaacatca
    24421 ggaattaagt gttttcctaa aaattccttt ctatttccat tacatttttc atttacccat
    24481 tgctttaaag gtttgttatt tttagattca ttttcatttg catcaagcat ttgtaaattt
    24541 ggtaaagaat cataaatatt aaaagaaata caattatctg tagctttata aagtttttca
    24601 tattctttat atgcggactc tggatgcaaa tgatctttat gaaaattatt atttttataa
    24661 tctaaatttg gataaagtaa agataacaca gcaaacgctt caggactatt tttacggcat
    24721 tctatgacat tattttctaa atattcttca tctattgttt gtatatattt tgcctctttt
    24781 tcaatttctt ccaatggaaa taattctatt tctctatcaa aaaagccact attttgctta
    24841 aaatctttaa taaaagcttt acgcatgtta gacaataccg tatcactact tccaccaaaa
    24901 ggctttaaaa taattgccct taacaaccat ttttttatta tagctctatt ttcattacac
    24961 ttgacagaat ctactatatt atttgtcaaa tttttatgat aaataaaata taaaatgggt
    25021 aaaatagcat tatttgatga aagtgttttt gcttcaaatc caaaacttct aagcaatcta
    25081 aatgtttcaa taaaagcatt ttttatgcct tcccatttag cttctatgga ttctataaaa
    25141 tttttatcaa aactattgat ttgaaattta atattgttat ggaataaata taaaaatcct
    25201 ttaaggatta aatctttaga gatatcgaaa ttttcattaa ttttatctac aagattattt
    25261 atttctgttc ttgcatcaat tttattccaa tttgcaatag caatactaaa taaaatatca
    25321 gaataatcaa gaggctcacc atttgaatta attctaataa aaatattaac cgctttatct
    25381 ggatcttgtt cttcttctaa atagaaatta attaaattct tatcaaatat cttttgatgc
    25441 aatagatcta atctatcttc ttcattttcg tttaaattaa attcttttgc tatttttctt
    25501 actcttcctg aatcatattg atataaatac tgacacttaa accatttttg ctgatattta
    25561 tcaatataaa tattttgttc ttttgtttct aatttatcaa gccataaaaa ttcatattca
    25621 atattttcat tttctggttt cttgctttga gtgagattaa aataaaaatg acaaatttta
    25681 aaatatctat cattgttctc ccatttatta tatgatctgt gaatatcata atttccaaac
    25741 aaagcaaaat aaagcgaagt taatctttgt tgtccatcta aaatcgcata aaaatcttta
    25801 tggtttgagg tgttaaaata atcattatgc gtatgatacg attcacgata atattctaaa
    25861 aatctataaa atttccaagc tgtcttgctt tcatctttta ctttccaaaa aagcatagaa
    25921 cttataggat atcctcgtat tagtgaatca aataattctt ctatctgcca aggctcccaa
    25981 acatactctc tttgaaatgc tggaagtaaa tattcattgt tttttattct ttgcattgct
    26041 tcattaattg ttattggtga ttgaaatcct gccattttta ctccttattt ttgtgtgatt
    26101 ttcaaaaatg ctgctaaatt tggatctttt tcatttttac aaagatcaag catttttaac
    26161 atcttttcat aatctcttgg catgacttta aaaaagtctt ttttatcgaa tttttctaaa
    26221 atatctttag cctttttaga atctgtataa gtgatatgtt tttctatcac agcttttaat
    26281 tctttttcat ccttagcatt aagatcttta atatccacaa gctcggtatt tacatgagct
    26341 tcattgtgtc ttccaaagat ataaacaacg cccccactca taccagcagc gaaattcgca
    26401 cccacatctc caagaactac aacttgtcca cctgtcatat attcacaacc atgcacgcct
    26461 gttcctaaaa ccacagccaa agcccctgaa tttcttacac aaaatctttc ccctgctata
    26521 ccatctaaat acacttcacc ttttgtagct ccgtataaac aagcatttcc tgcgatgata
    26581 ttttcttcag gtgaaaaagt ggcttcattt gaaatttttg ctatgatttt accaccactt
    26641 aaacccttgc ctaaataatc attgctatcg cctataatct caagtttaat accctttaac
    26701 aaaaacgctc caaagctatt gcctgcattg cctatagctt tgatatggat actatcttca
    26761 tctaaagcat cttttccata agtttttaaa atttcacttg aaagcatagt tgcaaaagta
    26821 cgactttgat ttcctacttc taaagaaagt ttgataggct cttttttctc cacagcattt
    26881 ttacaaagtg gtagtaaaat tctataatca atcgtttttt caagtttatt gtctttataa
    26941 tctttaaaat gcacagcggt tctattataa gtaggcaagg attttaaaat tttatctaaa
    27001 tttagctttc ctgctttacc ttgcacactt ttttggcgga gtttatccac gcgacctatc
    27061 atatcatcta ggcgttcaaa accaagcctt gccatgtatt ctctaagctc ctcagctata
    27121 aaatacatga aattaatcac atcatctact ttgcctttga aacgatctct aagttctgta
    27181 tcttgagtgg ctataccaaa aggacaggta tttagatgac aaactctcat cattgtacaa
    27241 cctaaaacaa tcaaaggagc ggttgcaaaa ccaaattctt cagctcctaa aagtgctgct
    27301 atggctaaat cacgcccatt cataagcttt ccatcagttt ctaatcttac cctatctcta
    27361 agcttattta agatcaaagt ttgatgcgtt tcagctaagc ctaactccca aggaattcca
    27421 gcatgcggta tagaagttct aggacttgca cccgtacctc catcataacc tgaaacaagg
    27481 attaaattcg cgcctgcctt agccacacct gcagcaaccg ttcctatgcc attttcgctt
    27541 acaagtttta ctgaaatttt agcgtctttg ttcgcatgtt ttaaatcata aatgagttga
    27601 gccaaatcct caatagaata aatatcatga tgaggaggtg gggaaataag cgtcacacct
    27661 gcagtagaat gtctagcctt agctatccaa ggatagactt taaagcccat taattgtccg
    27721 ccctcacctg gttttgcacc ttgagcgact ttgatttgaa tttcttttgc atgacttaag
    27781 tagtttaaat ccacgccaaa acgcccactt gctacttgct taatggctga gtttttatcc
    27841 acaccctctt tgatttcata gcgttcttca tcctcaccac cttcacctga atttgattta
    27901 gcacctattt tattcatagc ctgtgctaaa cactcgtgtg cttctttaga aatagaacca
    27961 taactcatcg cccctgttct aaagcgttta actatacttt ctacactttc aaccttatct
    28021 atactgatag cttcactaaa atcaaattcc atcaaagaac gcaaattaac ttgtttttca
    28081 tctactaaag ccgagtattt tttaaagctt ttatagtctt tgttgcgaca ggcttgctga
    28141 agattaaaaa tcacaagcgg atcgattaaa tgttcttctt tagcacttct aaaaccatga
    28201 attcctttag aatctaaagc cttatgtgta tcgttaaaag catgtttgtg taaagcaatg
    28261 agttcttttt caaaatcttc taaatccata ccttcaatgc gtgaagttgt agaagtgaag
    28321 tatttatcaa tcaccttaga gcttaagccc agacattcaa aaagtgcaga gccattataa
    28381 ctttgcaagg tagaaacccc cattttagaa gcaattttga ctataccact tgaacttgcc
    28441 ttgatgaaat tttctaccgc cttttcataa cttaaattta aatctttatt ggcaatgagt
    28501 ttttgtatac tctcataaac caaataagga ttaataacag tcgcaccata acctaaaaga
    28561 catgcaaaat gatgaatttc tctaggttca ccactttcga tgataagact tgtatgtgtt
    28621 cttaaatttt ttcttactag atgattatgc actccagaaa cagcaagcaa agcagggata
    28681 taagcgtttt tttcatccac tcctttatcg cttaaaatga taatagaaac acctttttta
    28741 acctcatctt ctatcttaac gcaaagttca tctaaagcct tttctaaagt ttttttagaa
    28801 taatcataaa gtatagaaaa ttctttaact tgaaatttat ttaaagcctt aacttcaaaa
    28861 agttcttcat tgcttatcac aggcaaggct atttttacgc gttttgcatt gttttcatcg
    28921 ggttttaata aattgccttc gcttcctaga taaatccttg tagaagtaac aatctcttct
    28981 cttatggcat caagaggagg attagttact tgtgcaaaaa gttgtttaaa ataattatac
    29041 aaaggttgat aagttttaga aagtatagcc aaaggagtat ctacacccat agctgctata
    29101 gcttctttac cattttgagc catagcagcc acgctcattt taagctcatc ataactccaa
    29161 ccaaaagctt tttgaagttt taaaacctca tcttctttta aaaactgatg tttataaact
    29221 ccgctttttt gtttttcaag ttcaactaaa tttttaagcc attttttata aggcttagca
    29281 ttagcataat gctctttgat ttcattatca gctataaccc tacctcttgc tgtatcaacg
    29341 agtaaaagtt ttccaggttc taagcgtttt ttagctttga tatttttttc atcaagtttt
    29401 aaagcccctg tttcacttga aagtatgagc atatcatctt ttgtaagata ataccttgaa
    29461 ggacgaaaac catttctatc caaactcgcc cccataatca ctccatcagt aaaaactata
    29521 gcagcaggtc catcccaagg ctccatcaat aaagaatgat attcataaaa agcacgcttt
    29581 ttgctttcca tattttcatt tttatgccaa ggttctggca ccatcatcat aaaagcttct
    29641 tctaaagtac gaccatttag agctaaaaat tctaaagtat tatcaaacat tgcagaatca
    29701 ctgctaagct tagctatgat aggaaaaatt tcatctaaat tttcaaaata ctcactttgc
    29761 atcaagcctt ctctagctct tatgctatca acatttccgc gtatggtatt aatctctcca
    29821 ttatgcacca tataacggtt tggatgggct ctttcccaac ttgggaaggt attagtcgaa
    29881 aagcgagaat gcaccaaagc gatggctgat ttcatattga catctttaaa atcaagataa
    29941 aaatcgctca attgagttga aagaagcatt cctttataaa ctatggtgcg tgaagaaaaa
    30001 cttgaaaaat aaaattttgg cacattaata gctctttttt ctataagtcg acgcgtacta
    30061 taaagcactc tttcaaactc aagtcctgca cttattttac ttggtttttt tacaaaggct
    30121 tgtaaaaaat aaggcatagc ttttaaagca cttgcaccta tatcgctagg attaaaaggc
    30181 acttctctaa aacctaaaaa ttcaagtttt ttatccttta aaccttgtaa aaatatttct
    30241 tttgcttctt cttttgcatc agtattgggt gataaaaaca tctgtgctac agcataatca
    30301 ccctttttag gaagttcaaa acccaattct tgagttttaa aaaaatcatg tggaatttgg
    30361 attaaaatcc ccgccccatc acctgaattt tcttcagctc ctgtaccacc tcggtgttca
    30421 agattcatca aaatttctaa agcatcacaa ataaccttat aagaagcaat accgcgtata
    30481 ttagcaactg cagcgatacc acaggcatcg tgttcgttct ttgggtgata taaacctatg
    30541 ctttgattat tttctaggat attttctaaa tccattttgc tctccttata agactgattt
    30601 aaattttgtt agctttataa ggattatagc atacattttt ttaaaatcga tataattttt
    30661 atcttaaaaa taaataaatt aaaaaatatt ttaatagatt tgcaaaaatt ataaaaacat
    30721 ggcgataata ctacctaaaa tcaataatgg accattataa aaaataaaag ttggtatgca
    30781 agtatcttta atgtgatcgt gttgtttatc agcatttaat cctacagtag ttcccatggt
    30841 tgtttcactg gctggacttc ctgcatctcc taaagctcct gctactccta agataaatat
    30901 aataagtgct gtactaaaac caagctccaa acaaatagga caaaaaagcg tagctatgat
    30961 aggtatagtt ccaaaagaag tacctatacc catagtgatg ataagtccta ttaaaagcat
    31021 gaaaaatact gctaaaaatt tactttgttc catccaagga acgactgaat ttacaagatc
    31081 tactactgat ccactttctt ttaaaacttc tccatatcct gcagcaacaa ggataacaaa
    31141 agctataaaa cccatcattt taagcccatc atcaaaaact tcattgactt ttgaaaattc
    31201 aactccaccc aaaataacca ttaaaacaaa acccaaaagc cctgataaag gtaaattcat
    31261 agtcaaaatt tgcaaaatta aagttaaaac aagcccagct aaaacgcccc attccttacg
    31321 cgtcatttca agattttcta aatccacttt agcaatttct acttcttgat actctcttgg
    31381 cttacgataa aacacaaaaa gcgctagaaa aagtcctgct atcatacaaa tagcagcgaa
    31441 atacatagta tttgtaacat catttaaaga tgcacttaca ttatttgcat ttaaattatc
    31501 ttttaaaaga tcttgaaaag taagcccaaa acctactggc aaaaccatat aaggcgtagt
    31561 aagtccaaaa gttaaagcac aagcaaccgc tctacgatcg attttaagtt tattaaaaag
    31621 acttaaaaga ggtggaatca acaaaggtat aaaagctaca tgaataggaa ttaaattttg
    31681 agaaaaacaa gaaatcaaag ctatagacaa aagcaataaa tattttttat gagatataaa
    31741 atgacttact atcttaatca aatatgcagt taaatttgtc tttgaaatcg ctgcggcaat
    31801 ggcccctaaa agtatatagc taagagctgt ttttaaattt tctttcattc cgcttataag
    31861 tatattcata gtatctacga gttcaagatg agaaaataca cctgcaacaa gagctgagat
    31921 caaaagactc aaaagtacat taaaacgaaa caaacaaagt aaagtcatca aaacaacact
    31981 gataatgata ggattagtaa gtaaagtcaa aatcattcct taaataattt taaaaattta
    32041 attgtagaaa aaactt
//
LOCUS       DARBAR010000003        31847 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.003, whole genome shotgun sequence.
ACCESSION   DARBAR010000003 DARBAR010000000
VERSION     DARBAR010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 31847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31847
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.003"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..688)
                     /locus_tag="SB815_000078"
     CDS             complement(<1..688)
                     /locus_tag="SB815_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0905858.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNFE
                     DDVFTNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFSNHFTRFFFYFLKPNE
                     KLILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYY
                     QDENLCFVGEV"
     gene            724..1998
                     /locus_tag="SB815_000079"
     CDS             724..1998
                     /locus_tag="SB815_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEG0905859.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEILKILPTY
                     ANTHSDSSLNSFKTQQTYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKIKDSIGVKNIEKKEEILKDYFFEKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTIVKLSH"
     gene            complement(1995..2819)
                     /gene="purU"
                     /locus_tag="SB815_000080"
     CDS             complement(1995..2819)
                     /gene="purU"
                     /locus_tag="SB815_000080"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEG0905860.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIHNNKTIIF"
     gene            complement(2816..3934)
                     /locus_tag="SB815_000081"
     CDS             complement(2816..3934)
                     /locus_tag="SB815_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEG0905861.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGKSFFVYKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGVGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKITSESLKLMQSMDITDLSKDRINAELCKFFKSPRLDVGYRYLQ
                     ELGLEKQVFGFESVFKSSEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     KKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(3903..4394)
                     /locus_tag="SB815_000082"
     CDS             complement(3903..4394)
                     /locus_tag="SB815_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HEG0905862.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQNEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(4391..4639)
                     /locus_tag="SB815_000083"
     CDS             complement(4391..4639)
                     /locus_tag="SB815_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG0905863.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPNNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(4718..4891)
                     /gene="tatA2"
                     /locus_tag="SB815_000084"
     CDS             complement(4718..4891)
                     /gene="tatA2"
                     /locus_tag="SB815_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HEG0905864.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKVQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(4904..5242)
                     /locus_tag="SB815_000085"
     CDS             complement(4904..5242)
                     /locus_tag="SB815_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HEG0905865.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            complement(5235..6149)
                     /locus_tag="SB815_000086"
     CDS             complement(5235..6149)
                     /locus_tag="SB815_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEG0905866.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDIFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLIAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPSGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            complement(6154..6678)
                     /locus_tag="SB815_000087"
     CDS             complement(6154..6678)
                     /locus_tag="SB815_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HEG0905867.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(6675..7457)
                     /gene="napH"
                     /locus_tag="SB815_000088"
     CDS             complement(6675..7457)
                     /gene="napH"
                     /locus_tag="SB815_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HEG0905868.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(7454..8194)
                     /gene="napG"
                     /locus_tag="SB815_000089"
     CDS             complement(7454..8194)
                     /gene="napG"
                     /locus_tag="SB815_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HEG0905869.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAEN
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFNVKKATNYLNDGEL"
     gene            complement(8212..10986)
                     /gene="napA"
                     /locus_tag="SB815_000090"
     CDS             complement(8212..10986)
                     /gene="napA"
                     /locus_tag="SB815_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HEG0905870.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
     gene            complement(11233..11760)
                     /gene="tpx"
                     /locus_tag="SB815_000091"
     CDS             complement(11233..11760)
                     /gene="tpx"
                     /locus_tag="SB815_000091"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEG0905871.1"
                     /translation="MSIVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(11860..12597)
                     /gene="peb2"
                     /locus_tag="SB815_000092"
     CDS             complement(11860..12597)
                     /gene="peb2"
                     /locus_tag="SB815_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HEG0905872.1"
                     /translation="MKKILILSLAASFLNAEILVYGPGGPAPVLKELALKFEEKTKEK
                     VIVTAGPTPAWVDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIVR
                     PNNPKNIKNFEDILKDGINVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAKN
                     SKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLENK
                     KALEFVDFIKSQEAQKVWKKYTWKEVK"
     gene            complement(12636..14666)
                     /locus_tag="SB815_000093"
     CDS             complement(12636..14666)
                     /locus_tag="SB815_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEG0905873.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
     gene            14795..15817
                     /locus_tag="SB815_000094"
     CDS             14795..15817
                     /locus_tag="SB815_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905874.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNPYSPSIQTNNSSSNVNTNNNTIQKQETNPLLDENQSLNNDTFNISIS
                     ENNQSLNNDTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERE
                     RAIKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRIN
                     LLKDMLSIIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSP
                     YLNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEII
                     EISSIK"
     gene            15840..18452
                     /locus_tag="SB815_000095"
     CDS             15840..18452
                     /locus_tag="SB815_000095"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEG0905875.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLTQGIKKE
                     ELGREEFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYAKFVDKEVILPISKKAIKIIADKHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEAREKIVAKLESLGFIEKIEEY
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNVLHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNAKNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVSIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIIMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            18457..19467
                     /locus_tag="SB815_000096"
     CDS             18457..19467
                     /locus_tag="SB815_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEG0905876.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            19464..20375
                     /locus_tag="SB815_000097"
     CDS             19464..20375
                     /locus_tag="SB815_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0905877.1"
                     /translation="MNEENISIVSAFFSRISQFFNEFSWQDIKEVSLSSITSFNENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGVSIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFKK"
     gene            20565..21338
                     /locus_tag="SB815_000098"
     CDS             20565..21338
                     /locus_tag="SB815_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG0905878.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALNDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            21387..22157
                     /locus_tag="SB815_000099"
     CDS             21387..22157
                     /locus_tag="SB815_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG0905879.1"
                     /translation="MNLFKIIILACILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSSYVNYVVV
                     RSEGKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            22167..22943
                     /locus_tag="SB815_000100"
     CDS             22167..22943
                     /locus_tag="SB815_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG0905880.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            23027..23689
                     /gene="flgA"
                     /locus_tag="SB815_000101"
     CDS             23027..23689
                     /gene="flgA"
                     /locus_tag="SB815_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HEG0905881.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGVLSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            23686..24249
                     /locus_tag="SB815_000102"
     CDS             23686..24249
                     /locus_tag="SB815_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEG0905882.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLNFKTE
                     NQANLEEICQENFKYTHFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIAGKWLDLLEIKHNLYEKWQNF"
     gene            24289..24765
                     /gene="coaD"
                     /locus_tag="SB815_000103"
     CDS             24289..24765
                     /gene="coaD"
                     /locus_tag="SB815_000103"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEG0905883.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            24756..25334
                     /locus_tag="SB815_000104"
     CDS             24756..25334
                     /locus_tag="SB815_000104"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEG0905884.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            25331..26557
                     /locus_tag="SB815_000105"
     CDS             25331..26557
                     /locus_tag="SB815_000105"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEG0905885.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKICEEVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYYGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCSQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            26554..28389
                     /gene="speA"
                     /locus_tag="SB815_000106"
     CDS             26554..28389
                     /gene="speA"
                     /locus_tag="SB815_000106"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HEG0905886.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSM
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            28390..29028
                     /gene="cysE"
                     /locus_tag="SB815_000107"
     CDS             28390..29028
                     /gene="cysE"
                     /locus_tag="SB815_000107"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEG0905887.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDIGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
     gene            29200..30369
                     /locus_tag="SB815_000108"
     CDS             29200..30369
                     /locus_tag="SB815_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEG0905888.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSKDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDKDIEKMRQAFEKRRNLALDILKQIPNISVYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGVGFGMDGYFRLSYATSDELIKKGLERIANFIKNYK"
     gene            complement(30419..30760)
                     /locus_tag="SB815_000109"
     CDS             complement(30419..30760)
                     /locus_tag="SB815_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEG0905889.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNALDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     VQRVNAVLKKP"
     gene            complement(30830..31792)
                     /locus_tag="SB815_000110"
     CDS             complement(30830..31792)
                     /locus_tag="SB815_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG0905890.1"
                     /translation="MQGKKYEIFLNENEHSLITPKVSFKEILRYYYLYPKNAIPSFKL
                     PFFKPDLSGFSTPHITWLGHSSLFISFKEYKILIDPIFNTHASPISFINKAFKNAPVY
                     NINDFNEIFAVIITHSHFDHLDAKSVKALKDKAKFFITPLKVGNYLKSYGVSEKKIIE
                     LDWWSGIEFGDLKIMATPAQHSSSRGDGKNKTLWASFVMEFLSVDKRVFFSADGGYFT
                     HFKKIGEYFGSFDLACLESGQFNIAWPYSHSFPEQILKEAKDLNAKAVMPIHWGRFLA
                     GTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKFKQDFWWKEE"
BASE COUNT        11484 a         5251 c         4533 g        10579 t
ORIGIN      
        1 taacttctcc gacaaaacac aaattttcat cttgataata aagatcaagt tctaaattct
       61 tatcccagta actttgcact ccattgatat tgaatttttt ctcaagtaat tctctagaaa
      121 gctgttcaaa acaaaaactt tgataaagtt caaatttttc cttaatacat tctaaaactt
      181 ctttataacg attttgcaaa ataagctttt cattgggctt taaaaaataa aaaaagaaac
      241 gagtaaaatg gttgctaaat ataatcttat cttggacaac ataagatctt agttcttttt
      301 tgattttttg tcttttatct tttatttttt tagcttcctt actatactca agttttatta
      361 tacctgtttc taaaagatat ttaagtgtag ataaagcttt aaaatgctga atttttctat
      421 tgatagaaaa acgcttgcga ttgtttttag ctagtaaagt aagagcgtaa gaacttgttt
      481 catccaaggc gaaataactt ttaattttta gataatcatc aagcaaaatt cgctctatat
      541 ttgtaaatac atcgtcttca aaatttaaaa tgtttaattt ttcaaaacct tcaaacacac
      601 tataaaaatc aaaaagctta cttaaagaca aattcttatg caaatctaca aagttcttaa
      661 attttatatt tttcctttta taaagcattt ttatagtata attttagcaa atttttataa
      721 ggattgtatt tgcaaatttc agatttaaaa aaagaattga tcttaaaaaa aggtattttg
      781 cattttgact tcacagcaag tgctttagct ctaaaatgtg tagaaaaaga aattttaaaa
      841 attctcccaa cctatgcaaa cacacattct gatagctctt tgaattcttt taaaactcaa
      901 caaacttacg aacaagcaag aaaagatata aaaaaaagtt tatcattaga tgaaaatttt
      961 gcccttatag cttgcggaac aggatcaagc agtgctatta aaaaatttca agaattgatc
     1021 ggcatttaca ttccccctct tgtaaaagaa agatatttta cgcaaattga taaaaatacc
     1081 ttacctttag ttatcgtagg gccttatgag catcattcta atgaactttc atttcgagaa
     1141 ggcttgtgcg aatgtattag aattcccttg gataaaaatg gagaaattga ttttgatttt
     1201 ctagaaaaaa ctttacaaaa aaacaaaaaa agaaaaataa tcgctagctt ttctttagct
     1261 tcaaatgtta ctgggatatt aagtgattac aaacgcattt ctgaaatggt tcgtaaattt
     1321 aaagggatag ttgcttttga tgcatctagt ttcattccct ataaaaacat atcttgtcaa
     1381 tactatgatg cgttgtttat aagttctcat aaattaatcg gtggtattgg cggttctgga
     1441 cttttagcca tcaaaaaaga tctttgtgga aacaaaccta gctttgccgc aggtggaact
     1501 gtgggctatg tttctcgcac ttcacaatgc tacctttgca atgaagaagc tttagaagaa
     1561 ggaggaacac ctggaatttt acaactcatt cgcgctagct tagcttttaa aatcaaagat
     1621 tctatagggg ttaaaaatat agaaaaaaaa gaagaaattt taaaagatta tttttttgaa
     1681 aaactaaaaa ctatacctaa tttaatttta tacgcaaaga atttaaaaac ccgattgcct
     1741 atttttgctt tcaatatcaa aggaatttct ccttttgata tcgcttacga acttagtaaa
     1801 aaataccaca tagaaacacg cgctggatgt gcttgtgctg ggccttatgg tcatgatttg
     1861 ctaggcttaa aagataatca aaaacttaaa acaaaaccag gttggttaag aataagcttg
     1921 cattatacgc atgaaaaaga ggatattgat tattttttta atgctttaaa taaaactata
     1981 gtaaaattat cgcattaaaa tattatagtt ttattattat gtataaaaat tctatcttca
     2041 aaagccaaat caagtgcttt tgaaagaaca tctttttcta tatttctacc tgcttgttgc
     2101 atatcttgcc aagtaaattc atggtttaca ggcgaaacag cttgagtgat aataggacct
     2161 tcatcaagat tattatttac aaaatgtgcc gtagctccaa ttattttaac ccctctttca
     2221 aaggcttgtt tataaggatt tgctcctata aatgcaggta agaaagaatg gtgaatattt
     2281 ataatcttgc cttcaaaatg cctaacaaaa tcaggagata aaattctcat atattttgcc
     2341 aaaaccaaat aatcaaattt atattgttca agacatttta aaatctgatt ttcttgctct
     2401 ttacgatcta aattttcagc gctgataaaa tgataaggaa tttcaaattt ctcaactaaa
     2461 tcctttaaag agttgtgatt tgaaatcaca gctttgatat ttgcttcaag ttcgttacta
     2521 taatgcttta ttagcaaatc tcccaaacaa tgactttctt tagtagcaaa aacaacaata
     2581 tctttttttc tcttctcgca aagctctatc aaggcttctt gtccaagcat agcctcaagc
     2641 gttcctataa aagcttcttt atcaaactca ccttctaaaa gagcacgaaa aaaaaacatt
     2701 ccttcaccta caaattcatc gttttttact atattgatat gatatttaaa aataacatca
     2761 gaaattctat aaattaaacc tttttgatct ttggtgcaaa tttttaatac agaaatcatt
     2821 tagctaaacc ttttatatat tcttttaatt cattctctct tgcttcttga agctttaaac
     2881 caagaatttt accacaaaat ccagcattta tgaaatcttt tgctaaaatt ttactttcaa
     2941 acttattctc ataaagccct aatcttttag cttgctcaat acgcttttta ctccaaagtc
     3001 caagccattc cttcaaaggc atttcaaaag caatttttgc tagttcaaaa tcacttatat
     3061 catcaagata aaaagcttga tttgcgtatt ttaggtattc ttttttaagt ttagttcttt
     3121 taaaaaatat atctttttct aaattaaaaa aattcaaata caaatacaag aataaagcat
     3181 cgctttttac aaattctcta ctttgtctga gtaaattttg aaattccgaa ctcttaaaaa
     3241 cactctcaaa gccgaaaacc tgtttctcta agccaagttc ttgtaaatat ctatagccaa
     3301 catcaagtct aggactttta aagaatttac aaagctccgc attgatccta tctttgctaa
     3361 gatcagttat atccatactt tgcatcaatt tcaagctttc actagttatc ttaaagttaa
     3421 accttgaggc aaatactact gctcttaata cccttaaact atcctcttga aagctttgtt
     3481 tatcaatatg ccttaaaaag cctactccta gatcttttaa tcctccataa aaatctaaaa
     3541 actcatcgtt aaaaagatta atcatcatag aatttatggt aaaatcgcgt cttttggcgc
     3601 caagtttttc atcattgcaa atttgaactt caaaaccttt atgtccatag cttattttat
     3661 tttcggttct agcaagagct aaatcataat ttttaaactt atatacaaaa aaactttttc
     3721 caaagccttg tgcgcccaat ttttgcataa tcttttcaaa atctttaggt tttatatcat
     3781 aaagctctat atcatagtcg caaattttta aacctaaaaa caaatcccta acgctacctc
     3841 caaccaaata cgctcgtttg gtataaggct ttaaaaactc agcgataaac tgtaaatcgg
     3901 gattattttt taagcttatc ttcgatattt gcaagcaaaa actctaaaaa atttatggtc
     3961 aagtttaacc tattttcaag atcatctttt tttatgctat ttaaaccttc aaaaagaact
     4021 aaaattctct ctctaagatg ttttaaaaaa atatcctcat taagcgtttg aacctctgtc
     4081 ataacactag gatttaaaat ttcattttgt aaaaaaggct cttctttttt aaactcttta
     4141 ttttcctgag tagaaatttc aatattattt tgtatttttt gctcttcttc aaattttgcc
     4201 atagaaattt tatcttctaa gtcttgcgga gtatcaagct cttcgcatac aaactccata
     4261 ggtggtaatt catcttttat ttcagttttt ctatttaatt cttgttcttt taaaatttca
     4321 ttttgtcttc tttgctcttc catgatagag ctaacttcgc taatggtttt tttagctaaa
     4381 tcttccaaat tcatattttt atcaaccacc ttttaaattc attaatttct tcatcgcttt
     4441 tcatattaat aaaaaaatcc aacatttgag tgtttaagtc tttatgcttg gatctaaaac
     4501 cactaagacg acgaaccgca tcgatagcgt tttggttatt cggatcttct tttaagatat
     4561 ttttataaat ttctaaagct tcgtctttta acccttgagc ctcatagata gaagcttcag
     4621 tgactgtatt tttcatcact gtttcctaaa atttttcttt aattctagca aaaagctttt
     4681 taatttatct ttaagaaaat aatatgattt ttaatgccta ttttgtttta aacaattttt
     4741 ctatatattc ttttttttct ttctctaagc tagaatttaa ttctttttgt tcttttttaa
     4801 cttgcacttt taaatcttga tttttaaaat acacataatc aattccaaaa ataacaccaa
     4861 ttataataag caatgggatt aaaaatacca tatactttac actttaagaa aattgattaa
     4921 acacactacc atagtagcga acattctcag cattttcatt tttttctatc gtttctattg
     4981 cgccactatt gattgctttt tggatatcat catttaaatc ttgataagaa aaaaccatat
     5041 taatactgat aatatttggc aatttctcaa gcattttata agagtttaac tcatcttcta
     5101 aattttcact ttcaatcaca actataatct tttcattttc acaaagttct acagaacaaa
     5161 aaggaatttc agatatagcc ttttttaaat catttatata ttcttctttt gctaaaatca
     5221 aaacactaga aagattattc atcaatactc ctaaacatta tactatcacc aaagcctgaa
     5281 acgataaaat ctttattgtt taaaaaaata ataaactcac tcatcaaatt ttcattatta
     5341 aaagttttaa caggcttaaa atcacttgtg ctaaaaactt cactaactcc agcttcatta
     5401 tcgctataaa cagcgaattc tccactagga cttaaagcac aagtatatat caaaaaatct
     5461 ttttgtaaaa aattttgttc ttcatttttt acaactccta tacgcctatc cgttccacaa
     5521 cttaaaataa cattattttt aaaatctact tgatagatat tatctttatg cattttatca
     5581 tagtttttca acatcttcca atttttcaaa tcaaaaagtt ctacttcgcc actctcaaaa
     5641 cctgcaatta gtctactctt atcttcattt aaaactgcat cattaagact agaatgggaa
     5701 aaattaaatt tttttatatt ttttaaactt ttatcaatca attctatttc agaaccaata
     5761 gaaatcaaaa gataagtatt ttcattgata aaaaatgctt ttattatgct attttcttcg
     5821 agctttttga tttgtaaatt ttccttataa aaacttaaat ttttagcacc aaaatcaccc
     5881 tcgctaagta ttaaaagtgt atgtttaaaa atatcaatgt tgtaaatttt agcaaaatca
     5941 tcaccataat aatttttaat ctttggcaaa gataaaagtt cttttaaact tttatcttta
     6001 atgttatatt gcaaaatttc acctttatca gtgcctatat ataagttttg cttatcaagc
     6061 tttaaagctg ttatattggc atttaatttc agctcataag cataagacaa aacacaaaaa
     6121 agactcaaaa taaaaagaaa ttttttcatt tatttacttt acaccctcat taatcacatc
     6181 aattaaattt gaacgacttt ttaattgttc atttttaaat tcaggtttaa agctatttcc
     6241 cactaaaggt tttgcatcac tttgtggaac atgacactga gtgcaattaa aacgactatc
     6301 gctaatcata tctcctgtgg ttttattgtg tctaaaatca taataatgac tagcaggaag
     6361 tggagttgca ccagcatctg ctgctatagc cttatcatgg cagcttaagc acatattgtt
     6421 atctttagtt ataggtaaca aatcttcaat agcatgcgga attaatggtg gtgcattttc
     6481 ataagaacgc tcaaaacgag tagattcccc aggctgtaaa gttgtgaaat ttgcctccac
     6541 taaatttact ttattttcat tttctaaact tgcttttcta agtccaattt gttctgaact
     6601 taccccacta ttcattgcac aagcggcaaa aaataccact gcagcacttc ctaataaaac
     6661 caatttcttc ttcatcattt attccttaaa tcaaaaatat taaaattcaa agcatcatca
     6721 ttacaaactt ctatacatct tgcacacctt atacactctc ctgatttcac gctagtactt
     6781 tcttttccaa ccatccacaa aacctgtttt tcaggacaaa tacggataca ttcataacat
     6841 ttagtgcatt tatcactatc atgctttatt ttaagcaaag caaaacgaga aataaaagca
     6901 taaaaagctc ctagtggaca aaaatgtgaa caaattgccc taggacttaa aaaagtatcg
     6961 atacaaaaaa gtataaaggc tacaaaaatc caagaacttg tagcaaaaat aatccctcta
     7021 tgtatcattc ctatataaga aaaactttca aacacaggca atgaaaatac aaaagaaagg
     7081 actaaaacca agaccaatac aaaatagcgt aaatttttag gcaaaattaa aaatttatta
     7141 ttaagggtta atttatttcg cacaaaagca gcaaaatctg tgattaaatt aacaggacaa
     7201 acccaagagc aaaaaaccct tcctaaaagc aaaccataga taaaaaatat aatcaaagct
     7261 cctattaaag ccattaaatc tatactccag cttgctagaa tgatttgcaa aactgcaaaa
     7321 ggatcactta aaggtatggt attaaaaagt ctagaagaac ttaaatttcc ctgcaagata
     7381 aaatctgtag ctttaaaact aaaaagcgct aaaattccaa gctgaacgat gcgtctagca
     7441 attaaatact tcatcacagt tctccatcat ttaaataatt ggttgctttt ttaacattaa
     7501 aatgttttga agtatctgca ttttttatac gaccttcatc tttttcatcc cagcctttta
     7561 cataatgaga tcctgctttt cccaatacat actcccttgg caaaacacga atggccggtt
     7621 tttcagtaat acaagccagt tcacaaagcc cacaacctac acacacttca tgatccacac
     7681 taggtagtaa aaaagcatgt ttggcggtgc gttcattgcg tttaagctca agttttaaag
     7741 ccctatctat caaaggacaa gctctataac aagcatcaca ttgaattccc cagtgtgcca
     7801 cacaagaagc actatcaaca atagcaatac ccattttcaa agattctata ccctgctcta
     7861 aatgcttttt atctaaagca tcagttggac attctctaat gcaaggaata tccttgcaaa
     7921 gataacaagg aatttctctt gccttaaaaa aaggcgtacc attttttgga ctatctaaca
     7981 agctagcaag ctttaaagta tcataaggac aggcttttac acaaagccca caacgaatac
     8041 atttacttaa aaatctagct tcattttcag ccccaggagg acgcaaggca taattatcat
     8101 cagcttttaa agccaaatta gccaaaaatc cacctcctgt acataaacat gcagccttaa
     8161 aggcactaac gaaaaattct cttctacctt tcatttaatc aaaaccctaa attaagcttt
     8221 ataaattttt acagcacatt ttttaaagtc agtttgtttt gaaagcggac aagtcgcatc
     8281 caaagtaact ttattgatat atacattctc atcaaaccac ggcacataca caagtcctac
     8341 aggcggtttg tttcttccac gcatatctac tcttgctttt actttaccac gacgagattc
     8401 cacccaaacc aaatcacctt gatttaagcc taatttctct ccatctttct cactcatata
     8461 gcaaagtgct tcaggcacag cacggtaaag ctcaggcaca cgcatagtca tagttccact
     8521 atgccaatgc tctaaaaccc ttcctgttgc aagccagaac ggatactctt tacttggtct
     8581 ttcaggtgct ttcataaatg gcctaaagaa aattttagcc ttatttttaa tactgtgctc
     8641 tttttcatct ttaggagcta ttaaatcccc atttgtaagc attttgttaa aatcaccata
     8701 aaaagcaaaa tctgaatttg gagccgcttt tttagcataa taatcaaatt tagtattaaa
     8761 tctccactgt gtttccttgc cattaaccac aggccatctt aaacccctta ctttatgata
     8821 ggtatcaaaa tccgctaaat catgtccgtg tcctaagcca aatttacgat attcttccca
     8881 aaggtatttt tgaacgaaaa agccatagcc tgtaaattct tttccatcac tgccttgaat
     8941 ttttctctca tcacctttaa catcggtatt atcaaagcct tttgcgatgg catcgtttgg
     9001 attaaagctt tttgcttctt tattggcaaa tagcacatca aaaagtgtat catcttcgct
     9061 ataacccata gcttttgcct cttctaaaac gcttggcaag gtaagcttat tatccacttt
     9121 ttgctctttc caaacttctt taagcttaaa gcgttttgca aattctaaaa tttgccaagt
     9181 atcactcatg gcagcaccta caggtaagac ttgttgtttc caatgttgag ttcttctttc
     9241 agcattacca taagcacccc atttttcata aatcatagcg cttggtaaaa taagatcagc
     9301 tacttttgct gaaattccag gataacaatc acttacaaca ataaaattat ccatttctct
     9361 tgctgctgca atccagtgat ttgcatttgc agtgttttgc catggattat tcacttgcac
     9421 ccatgcaaat ttaatttttc catcttctaa atctctcatg atattaagat aaggagaacc
     9481 tggttttggg ttgatagtct ttgcaggaac tttccaaatt ttttcagaaa tttctctgtg
     9541 ttttggattg gctacaacca tatctgcagg caaacgatgt gagaaagttc ctacttccct
     9601 agctgttcca caggcacttg gctgtcctgt taaagaaaag gctccactac ctggtttagc
     9661 ttgctttcct agcaaaaaat gtaccatata agcttgttca tttacccaag aacctcttgt
     9721 gtgttgatta aagcccatag tccaaaaact tacgactttg cgatttttct ctatgtaaag
     9781 attagctaat tcttgaagtt ttttcttaaa atcttccaaa gactcattat catcaccttt
     9841 ggctactctt gcagtgtatt ctaaagtata aggggctaaa ccttttttaa attcgtcaaa
     9901 agaaatttcc cagtttttat cagccacacc ttgatgtttc atttcaaatt tatcacccgc
     9961 tttaacgcca agataagata aagaagtagc ctcttcatca tctaaagtga ttacattttc
    10021 tttttcaacc gtatcttttt cactttcctt aaattttgga tgatttggat tatttctcat
    10081 accataacca atatcagcat aaccagttgc aaatacgcag tgatctttga taaatttcat
    10141 atccatagcc tctggatgat tataaacaat ctctcttgct atgtagttcc aaatagccaa
    10201 atctgtattt ggtttaaaaa taatttcaat atcagcaata tttgaagtac ggttagaaaa
    10261 agtgcttaga ttaacaactt taaccttatc aagattgctt agttttctat cacttactct
    10321 tgaccaaagg attgggtgca tttcagccat attagctccc caagtgataa tagtatctgt
    10381 aagctctata tcatcataac agcctgatgg ctcatctaca ccaaaagttt gcataaaacc
    10441 aaccactgca gaggccatac aatgtcttgc atttggatcg atattatttg ttctaaaacc
    10501 cgcttttgca agctttaaag cagcataacc ttcttggata gtgtattgcc cactaccaaa
    10561 aatccctata cctgtaacgc cgagttcatt gtaggctttt ttaaattgtt tttccatttc
    10621 atcaaaggct ctttgccaag aaacttgttg aaatttgcct tttttatcaa attcgccttt
    10681 ttcattcatg cgaagcaaag gcataacaag acgatcttca ccatacatga tcttagcatt
    10741 aaaataacct ttgatacaat taagtccgcg atttacgggt gctgcaggat caccttttgt
    10801 tgctacgatt ttgccatctt ttctggctat cataattcca cagccagttc cacaaaatct
    10861 acaaacagcc ttatcccatt tccaatcttc ttcttgtgca ccaagcatag agcttggaac
    10921 actaagtcct gcaacactag cagcacttgc aatagcggta tttttaataa aatcccttct
    10981 attcatcctt attcctccaa aataaaaaaa tcatcttatt ataaaaaatg gagtataaaa
    11041 atctcttgaa attttaataa aaataataat tttaaagctc tattttatag gagttttatt
    11101 gtccttttta tattattctt acacaaaata aatattaaaa ataatcaact taacaattaa
    11161 aatataatca acttaaaata ataaaaaaat gaagatataa aaattaagcc ctaagaatgg
    11221 gcttaatcaa aattaatggc aaccacaacc accgcagcag ctagaaccac caaaaaatgc
    11281 atcaagtttt gcaatatctg gcatttctgt gatttcattt acaagttctt tatatgccac
    11341 tttaccctct ttaatcacaa atacggcacg agctaaaagc ccttctaaag caccttcatt
    11401 tatcaaaaca ccatattttt caccaaattc ttttgccaca aaatcacttg caacacttaa
    11461 attttcaata ccttctgtac tgcaaaatct tcccatagca aaaggtaagt ccatacttac
    11521 tacaatcact tcagcaccat tgtaactggc tactttttta ttaaattctc tagcctctgt
    11581 agcacaaact ggtgtatcta aacttggaac acttaaaatg atttgagttt tacccgctgc
    11641 accgatttca atcacgctta aatctttagc tttaagattt accttaggag catctgctcc
    11701 aacttctact gaatttcctt taagttttac aggatttcct ttaaaattta ctatactcat
    11761 ttaatttcct ttttttgata ttttaaacat tattgcaatt aatgttttag gagtaattat
    11821 atcctataaa tattaattat tttttaattt cactcaaaat tattttactt ctttccaagt
    11881 atattttttc cacacttttt gagcttcctg actcttaata aaatctacaa attctaaagc
    11941 ttttttattt tctaaacctt tttttgtagg agctatttca gctgcacgat aaatcactgc
    12001 atttttatct ttgataaata aagctttatc atcgcctaaa gcctttgccc aatgagacca
    12061 aatgattaaa gcatcaatat ttggattgtt attccactca tctacagcag ctttggaatt
    12121 tttagcataa atttttatat ttttacgtaa ttttaccaaa ttttctcttt ttgcactttt
    12181 taaagccata tcttcataaa gtccaacttg tcctgcacca tcaaccacca taacatttat
    12241 gccatctttt aaaatgtctt caaaattttt aatatttttt ggattatttg gacgcacgat
    12301 aatacctgat ggacgcacat ttaaaacgct taaattttcc aaacttaaac ttggaatttt
    12361 tttagcaaaa tcatccatca ttgaagtatt gcctgaaaaa atcaaatctg cattttcttt
    12421 tgctttgtct acccaagctg gagttggacc tgcggttaca atcacctttt cttttgtttt
    12481 ttcttcaaat tttaaagcaa gctcttttag cacaggagca ggaccacctg gaccataaac
    12541 taaaatttca gcatttaaaa aacttgctgc taaacttaaa attaatattt ttttcataaa
    12601 ataaaccttt ctttgataat ataaaggaaa ttgtatcaat ctatagttaa ctctcccttg
    12661 caaagccctg cttctataag aaaacgagaa ggagcgaaag aagttttttt atttttatca
    12721 tatttagcat agcttaaata aagtatattt tttgccctag ttactgcaac ataaaaaagc
    12781 cttctttctt cttctaagct tccacccatt cccataagct tttgattagg aaagcgacct
    12841 tgcgcaagat caatcacaaa aacaagatca aattccaagc ccttacttgc atgtacgcta
    12901 agcaaattaa ctcctttgcc actactcatt tcacttgcac ctaaagttaa aaaattataa
    12961 tacttataaa tatcgctata attttttgta agctctttta agacattaaa ttttgtttct
    13021 attttttcta aattttcact ctttcttaat aaatccacct gccctgcttt gttcgtcgct
    13081 cttttagttg caagttcttc gcaaatttct ctataaaaag aattttcgca aattaaattg
    13141 actaaagtca aagaatgttt tatttccata gcttttttta aaaaaagata gattttttcc
    13201 aaatttctag cgcacaaatc attgattttt gaaagtctta aaataggatg tgcgtcaaat
    13261 tcactctcaa atttaaaacg agtttcgcta gctaattctt ctaaatctgc aaaaagccca
    13321 agttgataat ttcttttttg atgattttgc aaatttacat ttttatcagg atctaaaaaa
    13381 ccttttatta aatttccatg ccctaatttt aaaagtgcgt caaaaatttc ttttgctaaa
    13441 actccaccca cacctttggt atattgaacc aaatgaataa aagccatgat atccttagga
    13501 tttaccacaa gcgcaagcat ggagctaaaa gctttaactt ccaaactttc aaaaaaactt
    13561 ccacttccct ttctcacact tgcaatgccc tgctccctta aagctacttc aaccccatca
    13621 gcacttgagt tgttgcgaaa aatcacggca atttcttcca aacttactcc gcttgtaagt
    13681 atcattttgg ctatattttg atactgatca aataattctt caaaagtaag caaagatggg
    13741 gctttaaact catcatttct tgtaacaata agttcttttg gatataatct ttcgttattt
    13801 aaaatcactt tattagccaa agctaaaata cttcttgatg aacggtagtt tttatttaaa
    13861 gaaaaaattt ttgcatcttt aaaacgatct ttaaacccac ctatgatatt aatatccgct
    13921 ccattaaaag cataaatact ttgatcataa tcccctacgc aaaacaaact tttactatga
    13981 aaagcctcta ttaaagaact ttgcaaagta tttgtgtctt gatattcatc tactaaaatt
    14041 tcatcaaatt catatttttc ttcttttaaa agatctttta gattgataag caagtcatta
    14101 aaatccacat aattaaaacg ctttttttca ttatcatatt cttttaaaat atcttcataa
    14161 atttcagcat aaatactttg atcttcatag ttttgacaaa accaagtata aaaatcttga
    14221 ttgtgtgctt tgttttgaaa caaagaataa agatcgtata aataacttga ttgataaggt
    14281 tttatatcac ttaaatgcct aaaagttctt ttttcataga cacttttaag tagagttttt
    14341 aactcgcttg cttgctttaa ggctatattt ttatccgcat ttctaagtaa ggtataagcc
    14401 gtactatgaa aagttcctgc aagtatttta ctggtaatat ttttatcaaa aaatttccct
    14461 aaacgcccta tcatttcttt gctggcttta tttgtgaaag tcaaaagcat gattttttga
    14521 ggtgccactc ccttgcttaa aagataagaa attcttgcaa caatagtaga agtttttccc
    14581 gtccctgcac ttgcaataac aagattgtgt ccaaaatcag cagtagcggc aagatattgt
    14641 tcattattta attttgaaag tggcattatt ttccttataa aagttaaaat tataaaaaaa
    14701 aattacttaa aaatataaaa atttaaaatt actttatatt agattatagt acaatgctaa
    14761 aattatttaa ctttctattt ttaagggata gcaaatgaat ttgaaaattt tttctattat
    14821 tgttggcata ttaattgctg ttattgtaat attaggtgga acctattatt atctttttga
    14881 atattcaaaa ccaaagaatt acaccttaaa taccaacact tacaccgaac aaaaatcgta
    14941 taccaataac tacgataatc cctattcacc ctcgatccaa accaacaata gttcatcaaa
    15001 tgtaaatact aacaacaata ccatccaaaa gcaagaaaca aacccattat tagatgaaaa
    15061 tcaaagctta aataacgata catttaatat atcaataagc gaaaacaatc aaagcttaaa
    15121 taatgacacc aatacaagta ataatattaa tacaaatgaa aataagcaaa ttttagatac
    15181 ggataaagaa aaattaaaac aagaaaataa acaagccaaa atagaagctc ttaaaaaaga
    15241 aatcagcaaa cagcaaaaga tcttagaaag agaaagagct ataaaaaaag aacttcaatc
    15301 aaacaaatca aacaaaaata aatatctaaa taccgctaga gagtatctaa gcataggaaa
    15361 aaacagtcgt ttagaacctg agcttagcac agaaaatatg aaagtttata ttttagatgg
    15421 aaaattttta agccaataca gaatcaatct gttaaaagat atgctaagca ttatacaaga
    15481 taatgcaaaa gattattatc taagtatttt tgttaaaatg ctaccaaaag gggaaatgaa
    15541 attaactatc tataacaaag aaattatctt ttcagatatg aaaaaagctt ataaatatat
    15601 tagtttagat agattaagcc catatttaaa caatccaaaa gaattaaatg aacatgtagc
    15661 acgtgaagaa attttagaaa gacttaaact tcaaattaaa aaagatggca aaggaagtga
    15721 tttttctaaa catatcaaaa gtttgaaaac tggacttaat acagcacaat atttcttccc
    15781 gttttgtgaa attatagaaa ttagctctat taaataagct aaaacaataa aggcaaataa
    15841 tgtatgataa aaatttagaa aaagagtatt atcaaatttg cgaagaacgc ggatattttg
    15901 aaatcgatgg caataaaacc atacaagaaa aagataaaaa tttctgcatt atgatgcctc
    15961 ctcctaatgt cactggagtt ttacacatag gacatgcttt aacttttact ctacaagata
    16021 ttatgacgcg ttataaaaga atggatggct ataaggttct ttatcaacca gggcttgatc
    16081 acgcaggtat tgccactcaa aatgttgtag aaaaacaact ccttactcaa ggcattaaaa
    16141 aagaagaact aggtagagag gaatttatag aaaaagtctg ggagtggaaa gagcaaagcg
    16201 gtggaaaaat tttagaccaa atgagaacac taggcatcac tcctgcatgg agtcgcttgc
    16261 gttttactat ggatgaaggt ttggttaatg ccgtaaaaaa agcctttgta gaactttatg
    16321 ataaaagact tattgtacgt ggaaactaca tgataaattg gtgtactcat gatggcgctt
    16381 taagtgatat agaagttgaa tacaaagaaa acaaaggaaa actttatcat attaaatact
    16441 ttttaaaaga tagcgatgaa tttttagtag tagccacaac gcgtcctgaa actttttttg
    16501 gcgatactgc agttatggtg catcctgatg atgaacgcta tgctaaattt gtggacaaag
    16561 aagtgatttt gcctataagc aaaaaagcca ttaaaatcat agccgataaa catgtagaaa
    16621 aagaatttgg aacaggagtt gtaaaagtta ctcccgctca tgacatgaac gattatgaag
    16681 taggacttag acataattta gattttataa gtgtttttga tgaaaaagga attttaaacg
    16741 agcattgttt agagtttcaa ggtttagaac gcttagaagc aagagaaaaa atcgtagcca
    16801 aacttgaaag tcttggtttt atagaaaaaa tagaagagta taacaatcaa ataggatatt
    16861 gttatcgttg caacaatata gttgaacctt atatctccaa acaatggttt gtaaaaaaag
    16921 aaatcgccca agaaagtata gaaaaagttg cgcttggaga aagtaaattt tacccaaatc
    16981 actggataaa tagctttaat gcttggatga aagatttaag agattggtgt atttcaagac
    17041 aactttggtg ggggcatcaa attcctgtgt attattgcga atgctctcat gaatgggcaa
    17101 gccaacatac gcctaaaact tgtccaaaat gtcaaagtca aaatttcaaa caagatgaag
    17161 atgtgcttga tacttggttt tcttcaggac tttgggctat gagtactcta ggctggggaa
    17221 atgaaaattg gggtaaagat aaaatttggt ctgaaaagga tttaaaagat ttttatccca
    17281 attctttact cattacaggt tttgatattt tatttttctg ggtggctaga atgatgtttc
    17341 aaagcaccaa tgtcttacat caacttcctt ttaaagatat ttatttacat gctcttgtga
    17401 aagatgagca aggtagaaaa atgagtaaaa gccttggaaa tgttatcgac ccaaatgaaa
    17461 gcattaaaga atatagtgct gatattttac gctttacttt agcacttctt gctatacaag
    17521 gacgcgatat taaacttagc aatgataaac ttttacaagt tagaaatttt acaaataaaa
    17581 tttataatgc taaaaattat ctgcttttaa atgaaagtaa atttgaagat ttggaaaata
    17641 tcacacttca ttcagaatta gcaaaatata tttatgccaa atttcaaact tgtgttaagg
    17701 atgtaagaga aaatttagac aattatcgct ttaatgatgc ggctaatact ctatataaat
    17761 tcttttggga tgatttttgc gattggggta tagagcttag caaagccgaa aaatcaagcg
    17821 ttaaagaact tggtagtatt ttcaaagaag ctttaaaact tttaaatcct ttcatgcctt
    17881 ttatcagcga gtatttatac cacaaactaa gcgatacaga acttaaaaca agcccttcta
    17941 ttatgataag caaatatcca aaatttaaag aacaagataa aaatatagaa aaaatctttt
    18001 ctttgctcat agaaagcata gttagtatcc gccgtgctaa aagtttaatc gatcttggaa
    18061 attctaaaat agaaaaagct tatatcaaat ttaacgataa aaaaatcaaa gatgaaatca
    18121 aagcttatat gaattttatc ataatgctcg caaagtgcga gcaaatagaa tttagtgaag
    18181 aaaaattacc aaaggcaata tgtgatgtta gcgagaattt agaaattttt attacgcttg
    18241 aaaatgttga tttaagtggt attttaacaa gacttgaaaa tcaaaaaaat aagcttgaaa
    18301 aagaaagttt caagcttaac tccatgcttt caaatgaaaa attcatcgct aacgcaccta
    18361 aagaggtggt ggagcaaaat aaagaagctc tagaaaattt aaaaattcaa cttgaaaaaa
    18421 tatcagttga acttcaaaat ctaagaggtt aaaaatttga taaaaataaa aaatttaaaa
    18481 aaatattatg gcaaggaact cgtgataaac gatgtttctt tggagattaa aaagggtgaa
    18541 atttacgcca tagtaggtca tagtggagct ggaaaatcca ctcttttaag atgtattaat
    18601 ggacttgaga attatcaaga aggaagttta aaagtctttg atcaagaaat taaagattta
    18661 agtcaaaaaa aatcaaaaga gttaagaatg cttagaaaag atatagggat gatttttcaa
    18721 aattttgccc taatggagcg caaaaatgta tttgaaaatg ttgctatgcc tttaagaaca
    18781 cactatactc agtgtaaatt tcatgccaag ctttttaata aagaatacat gagcgaaaaa
    18841 gaaattgccc aaaaagtcaa ttccttactt gaaatcgtag ggcttgatca taaaaacaaa
    18901 tcctacccaa gagaactgag cggagggcaa aaacaacgtg ttgctattgc tagagcctta
    18961 gctttaaacc caaaaatttt acttagtgac gaagctactt cggctcttga tccaaacact
    19021 acaaaaaata ttttagagct tatatctaaa atcaatgctg aatttgggat tactgttgtt
    19081 ttagtaactc acgaaatgga tgtggtaaaa gacatagctc aaaaagcttt attacttgaa
    19141 catggacaaa tcataggaag tggagcaatt gatgagcttt ttttaaggcc taatgccaaa
    19201 atgaaagaat ttttaggaga aagcgacttc ttgcctgagc acggacttaa tatcaaactt
    19261 tactttccaa aagaagttgc ccaaaatagc gtcatcactc atatggcaag aactctaaat
    19321 atagacttta acatagtttg gggtaaaata gaaaaactga atggaaaagc cttgggaaat
    19381 ttagttataa atataaatga aaaggataaa gacaaggttc ttgattacat agaaaaaagt
    19441 ggagtattat gggaggtggc atcatgaatg aagaaaacat ctctattgtc agtgcttttt
    19501 ttagtagaat ttctcaattt tttaatgaat tttcttggca ggatattaaa gaagtgagtt
    19561 taagttctat cacgagtttc aatgaaaatt atgaaaacat tttaaaacct gcacttaatg
    19621 aaacaattta tatgagttta atggctgtac tatttggatt tttattggct atcattcctg
    19681 gaattttact tgctatttgg gataaaaatg gaattaaaga aaataaaatc gcttatagta
    19741 ttttagattt tattaccaat atattacgcg cctttccatt tttaattctt atagttgttc
    19801 ttttaccact ttctaaaatc atagtaggca caagcatagg tacaaatgct gccatagttc
    19861 ctttagctat cggaatagct ccttatttgg caaagatgct tgaaagcgct tttaaagaaa
    19921 tagacaaagg aattatagaa gcagcaaaaa gttatggtgc tagcaatatt caaattatct
    19981 tcaaggttat ctttagtgaa gcccttcctg ctataattag cggaattacc ctaactttga
    20041 tctttaccat tggtttttct gctcttgctg gaactgtcgg tggtggagga ttaggagatg
    20101 tagctattcg ctatggttat gaaagattta acaaagaagt tatgattcaa actgtagtta
    20161 ttttacttat attagttcaa ttagttcaaa ttctaggtaa tttattttat acttgggcta
    20221 aaaatagtaa aactacatat atcattgcca ctctattgat tttacttgga gttagtatag
    20281 ttatcaatat aaacaatgat gaaaatttct tttggcaagt aattgttttt atcttatttt
    20341 taggaagttt gctttataaa ggtttcaaaa aataaggaga ttatatctcc ttttaagata
    20401 aatataagtt tttttaagta aaatttaaaa aaaattaaag gaattaaaat gatgtatcag
    20461 atgcgttaat ctgactatca acaagttttt atatgcttct tcctgatagt cagagtgaat
    20521 ttattaagat taaagcaagc acaaaatgac taaaaaggaa aaaaatgaaa atcaaatctt
    20581 tatttatagc aagtatttta acattaagtc ttaatgcaaa tgcattagaa accatcacag
    20641 ttgcagcaac tcccgtccct catgctgaaa tcctagaaca agtaaaacct gatttagaaa
    20701 aacaaggcta taaacttgaa atcaaagaat ttacggatta tgttttgcct aatctagctg
    20761 ttgataacgg agaagccgat gcaaattttt tccaacatac tccttatttg gaagaattta
    20821 ataaaaacaa aggcaccaaa cttatcaaag tagctgccat acacatagaa cctatggctg
    20881 tttactccaa aaaatacaaa agtctagatg atattaaaga aggggttaaa atcgccattc
    20941 caaatgatcc aaccaatgaa agtagagctt tagatattat tgcaaaaaaa ggtttggtaa
    21001 aatttaaaga taaggcttta aaaacacctc ttgatattat agacaatcct aaaaaaatta
    21061 aatttgtaga attaaagccc gcacaacttc caagagcttt gaatgatgtt gattttgctg
    21121 taattaattc caactacgct ctctctgcaa atctaaatcc tgcaaaagat agcgtattta
    21181 tcgaagataa agaaagcccg tatgcaaaca ttcttgttgt aagagtggga catgaaaacg
    21241 atccaaaaat caaagcctta atccaagctc tacaaagtga taaaatcaaa caatttatca
    21301 tagaaaaata caacggatct gttttacctg ctttttaatt ttgtccctta cctagggact
    21361 tttttcttaa gtacaaagga gtttttatga atttatttaa aattattata ctcgcttgca
    21421 ttctaaattt atctagccta tttgcacaaa acattactat aggagccact ccaaatcctt
    21481 ttggtagctt actagaacta atgaaagatg attttaaaaa caaagggtat gagcttaaaa
    21541 tagtagaatt ttcagactat attttgccca atcgtgcatt agaggaaaaa gaacttgatg
    21601 caaatttata tcaacacaaa ccttttttag aagaatacaa cctaaaaaaa ggttcaaatt
    21661 taattgcaac aacgcctgta cttatagctc cagtaggagt ttatagtaaa aaaatcaaaa
    21721 atttagaaaa tcttaaagaa ggtgctagag ttgctatacc taatgatgcg accaatgaaa
    21781 gcagagcttt agagctttta gagaaagcaa aattaataga gcttaacaaa aatactctaa
    21841 aaaccccatt ggacataaac aaaaatccaa aaaaacttaa atttatagaa cttaaagccg
    21901 cacaacttcc aagagcttta gatgatgttg atattgctat aattaattct aatttcgcac
    21961 ttggagccgg tctgaatcca agtaaagata ctatttttag ggaagataaa aatagctctt
    22021 atgtaaatta tgttgtggta cgctcagaag gtaaaaatag cgaaaaaacc aaagtaattg
    22081 atgaaatttt aagaagcgat aaatttaaag ccatcattaa tgaacattat aaagatatat
    22141 taatcccagc tttttaggag tataatatga atattaaaaa aatattttta agtgttttat
    22201 ttacaattag ccttagtttt ggggcagata aaaccataat cataggtgca acaccaacgc
    22261 cttatgctga aattttaaat ttctctaaac ccttatttca agaaaaaggt tggaagttaa
    22321 tagttaagga atttaatgac tataatatac ctaacatcgc tttaaatgaa aaagatttag
    22381 atgcaaattt atatcagcat aaaccttttt tagatgattt taatacccac aaaggaacaa
    22441 aattaagttc tttaggtgct attgttttag ttcctatggc tatatattct aactccataa
    22501 aagatataaa agacattcct aatggtgcta aaatcgctat acctaatgat gctaccaatg
    22561 aaagcagagc tcttgattta ctagctaaag caaatttaat agagtttaaa agtcaaagca
    22621 cccttaaaac ccctattgac ataagtaaaa atccaaaaaa acttaaattt atagagctta
    22681 aagccgcaca acttccaaga gccctaaatg atactgattt ggctattatt accacaaact
    22741 atgctcttgg agcaggctta aaccctttaa aagatggtat ttttatggaa gataaagata
    22801 gtttatatgc tattgtttta gctacaagaa aaggtgaaga aacaagtcaa aaaagtcttg
    22861 ttattaaaga aattttaaca agcgataaaa ttaaaaattt tatcatagaa aaatacaaag
    22921 gctctgttat ccctactttt taactctata caaagccttc taaaggcttt gttaaactta
    22981 taaaagctaa aatactattt attgcattat aattcttagg ataaaaatga aaattatttt
    23041 tttaactttt tttattgtga taaattatat ccaagcagct agtttagaag aaatcaaaac
    23101 agcactagct aaagaattta gaaataattt tcctaaaatt ataatttctc aaattgattt
    23161 aaaaataaca tcattgccta aagattttga tcaatatgaa tttctaagaa tcgctaatgg
    23221 gcgttttaat caagcacaag gctttttaag ggctgaattt aaaactccgc aaaatataca
    23281 aaaaaatgta ttttttagat atttcattca agcaaattta gaagttttaa aaagcgaacg
    23341 cgctataaaa agaggagata aacttggagc ttttgactat aaaagcgtat tgattgattt
    23401 tgataaagtt cctttaaatg ccttaacctt agatgatgta gataatcttg tagctaaaag
    23461 caatattaac aaaaacgcca ttttaagagc aaatatgttt aaaaccacag ctttaatacg
    23521 ccgaaatgat cctataatcg gggttttaag cgaagcaaat gttgatgttt taatcgaact
    23581 tgtggctttg caaagtgcaa atatgggcga aaggattcgt gcaaaaaaca aagaaggtaa
    23641 agttatgcaa ggtatcgtag tgggtaaaaa taggatgatt atacaatgaa agttttattg
    23701 ggaatttctg gttcaagcag tgtcaattta ggcttaaaat tattaaaaaa tttagaaaat
    23761 caatgcgaac tttattgtat tttaacccaa ggtgcaaaac ttaacttcaa aactgaaaat
    23821 caagcaaatt tagaagaaat ttgtcaagaa aattttaaat acactcattt tttagatgat
    23881 aaaaatttaa gtctaagtgt agcaagtgga tcttttggaa tagaaaaaac catcattgct
    23941 ccttgttcaa tttcaagttt agcaaaaatt cacgctggtt ttgcagacac tcttttaatg
    24001 cgtgctgcag cagtagccct aaaagaaaga aaaaaactca tcttaggggt acgtgaaatg
    24061 cctttttcta ctttaaattt agaacatatg ttaaaactta gccaaatggg agttatcatc
    24121 gcccctccta ttatcgcaag ctattctaaa gcaaacaatc tagagcaaat ggaaaatttt
    24181 atcgcaggta aatggttaga tcttttagaa ataaaacaca atttatatga aaaatggcaa
    24241 aatttttagt ttaaatttgt tatattttta aaaaaaattg gagcaaaaat gacttgttta
    24301 tatcctggga cttttgatcc tattaccaac gggcatttag atgttataaa acgggcttta
    24361 aaaatttttg atgaagtcat cgttgccata gcaaaaagtg aacataaaaa accttgctat
    24421 gatttagaaa aacgcaaaga actagccctg ctcgcaacac aaaatttaaa aaatgttaaa
    24481 atcattgctt ttgataattt acttgtagat ttagccaaag aattaaaagt taatactata
    24541 atccgtggac ttagagcagt gagtgatttt gaatacgaat tgcaaattgg ctatgcaaat
    24601 cacgcacttt gggaagatat ggaaaccatt tatcttatgc caagtctaaa acatgctttt
    24661 atttcaagtt ctattgtgcg ttctatagta gcacatgggg gtgatgtaag ttctcttgtt
    24721 ccaaaagaaa ttctaccttt tttaaaggat caatcttgta tgtagttttt gaaggtattg
    24781 actgcgtagg aaaaagtacg caaatttcac ttttaaaaga aatttataaa gacgccattt
    24841 tcacactcga acctggcgga acagaacttg gaaaacattt aagagaaatt ttacttaata
    24901 aaactcatcc tattaacaaa agagctgaac tcttgctttt tttagctgat cgtgctcaac
    24961 attttgaaga aatcttaaaa accaatcaaa acaaactcat tattagcgat agaagtttta
    25021 tttcaggcat ggcttatgcc aaagattttg aaaacgattt gctttttgct ttaaatagtt
    25081 ttgctttaga aaattttttt ccacaaaaaa ttatcttttt aaaaggagat gcaaacctta
    25141 tccaagaacg cctcagtcaa aaagaactag atagtataga aaaacgtggc attgagtatt
    25201 ttttaagcgt gcaagataaa ctcgaaaaag tgcttcattt tttaaaagaa aaaatttctg
    25261 tagaaatttt aacacttgac gcaaaagaaa gtaaagaaaa attacaccaa caaataaagg
    25321 aatttttaca atgattaacg ctttaaaagg aatgaaagat ttattagata aagatgcata
    25381 ttattatgaa aaagtgatta aaatctgcga agaagtagct aaaaactatg gctttacttt
    25441 tatcaataca ccgcatttag aactttgcac cctttttaaa agaagcgtag gagaaagttc
    25501 tgatatagta ggtaaagaaa tgtatgaatt tatcgataaa ggcgaaaatc atgtttgcat
    25561 gcgtcctgaa ggaactgctg gggtggtgcg tgcctatata gaaaaaaaac tcgataaaaa
    25621 cactagtgtg aaaagatggt tttattatgg ttctatgttt cgttatgaaa gacctcaaaa
    25681 gggtcgctta agagaatttc atcaatttgg agttgaaagc cttggcatac ctaatgttta
    25741 tgaagatgca agcattattt taatgctagt agaaattttc tcacgccttg gtattgattt
    25801 taaacttcaa cttaattctt taggctgctc acaatgcttg ccaaaatacc gcgataggct
    25861 cgttgaattc ttagattcca aagaaggttt ttgtgaagat tgtttgcgta gaaaaaattt
    25921 aaatcctatt cgtgtcttag attgtaaaaa tgagcattgt caaaatttgc ttgaaaatgc
    25981 tccgcttttg atcaataatt tatgcacctc ttgccaaaaa gactttgaaa cactgcaaca
    26041 aattttaaag gataatggag ttaaatttga gttagattca aaacttgtga ggggtttgga
    26101 ttattattct aaaacggctt ttgaatttat aagcgatgaa ataggagcaa aggctgctat
    26161 cgcaggtgga ggacgctacg atagacttat agagtattta ggtggaaaaa gtggctatgg
    26221 tataggtttt gccatgggta tagaaagaat tataactatt ttagaacaaa aagaagaaaa
    26281 gattcaaaga gaaggaattt atctttgtgc tatggatgaa atttatatcc aaaaactttt
    26341 gcatatcgct acaaatttaa gaaaagaata taaagtactt ttaagctatg aagcaagaaa
    26401 actagccaaa catcttgaaa acgcggataa aaataatact gaaatttttc tttgcatggg
    26461 agaaaatgaa gcacaaaatg aaagtttgtt ttataaaaat ttagcaaaaa aagaagaaaa
    26521 aatgattaaa atttcagact taaagaaggt tttatgatgg attatggtat tgatatttgg
    26581 ggaaatgaaa atttcattat caaaaatggt aaagtttgta tcaattacga gaaaaaacct
    26641 gctattattg atatagttaa agaattaaga gatgatggat acaaggggcc tttactttta
    26701 agatttcctc atcttatcca aaaacaaatt gaaaatattt acggaaattt caataaagca
    26761 agaaaggaat ttggctataa aggaggattt aacgctgttt atcctttaaa ggtcaatcaa
    26821 taccctggtt ttgtaaaaaa tcttgtaaaa cttggaaaag actataacta tggacttgaa
    26881 gcaggttcta aggcagagct tttactcgct atggcttata ataacgaagg cgcacctatt
    26941 accgtaaatg gctttaaaga tagagaactt atcaacatag gctttattgc agctgaaatg
    27001 ggacataata tcactttaac catagaagga cttaatgaac ttgaagctat catagacata
    27061 gctaaagaac gctttaaacc taaaccaaat ataggcttac gtgtacgttt gcattctgct
    27121 ggagttggaa tttgggcaaa aagcggtggg attaattcta aatttggact tacatccact
    27181 gaactcatag aagcggtaaa tttactcaaa gaaaacaaac ttttagaaca atttaccatg
    27241 attcactttc atctaggctc acaaattacc gaaattcacc ccttgaaaaa agccttaaat
    27301 gaagcaggaa atatctatac agaacttaga aaaatgggag ctaaaaatct aaaagctatt
    27361 aatcttggtg gcggtttagc tgtggaatac tcacaattta aaaatgaaaa aagtagaaat
    27421 tacaccctaa gagaatacgc taacgatgta gtttttatcc taaaaaacat agccgaacaa
    27481 aaaaaagatt tagagcctga tattttcata gaaagtggac gttttgtagc agctaatcac
    27541 gctgttttaa tcgctcctgt attagaactt ttttctcaag aatacgcaga aaacaaactc
    27601 atacttaaaa aacaaaatcc aaaacttatc gatgagcttt atgatcttta taaaagtata
    27661 aaaccttcca atgctttaga atacttgcac gatagcatag atcatttaga gagtatttta
    27721 actctttttg atttgggcta tgtggattta caagatcgtt ccaatgctga aattttaact
    27781 catttgatta caaaaaaagc catcttgctt ttaggcgata agcaaaatcc tgcggattta
    27841 cttgccatac aagatgaagt gcaagaaagg tatttggtaa atttttcgct ctttcaaagc
    27901 atgcctgatt tttggggttt agaacagaat ttccccatca tgccacttga tcgcttagat
    27961 gaagaaccga cacgaagtgc aagtatttgg gatataacct gcgatagcga tggagaaatt
    28021 tcatactcta aagataaacc tttatttttg cacgatgtag atgtagaaaa agaaaattat
    28081 tttctagggt tttttcttgt aggtgcctat caagaagtac ttggaatgaa acacaatctt
    28141 tttactcatc ctactgaagc tattataagc atcaatgaaa aaggctatga agtcgagggg
    28201 attatagaag cgcaatccat acttgatacc ttagaagatt tagactatga tatacacgct
    28261 atcatggata tacttaatga acgcataagt aattctaagc ttgtaaatga taagcaaaaa
    28321 aagcatattt taggcgaact ttatcttttc ttaaatgata atggttattt aaaaagcata
    28381 ggagtttaga tgaatttttg gggtattata aaagaagatt tttctcagcc aaaggcacaa
    28441 gatccagctt ttaattcttg tatagaactt ttttttaatt accctggagt atgggctgta
    28501 gtaaattacc gctttgcaca ttttttttac ataagaaatt ttaaacgcat tgctagaatg
    28561 attagcggaa tttcacaatt cttaactggg gtagatttgc accctggagc agaacttgga
    28621 aggcgtattt ttatagatca tgccaatgga gtggttatag gtcaaacagc aattatagaa
    28681 gatgatgttt taatttatca aggcgttact ttaggtggaa caagccttga aaaaggtact
    28741 aaacgccatc caaccataaa aaaaggagtg atcataggct caggcgcaaa agtgcttggc
    28801 aatatcacca taggagaaaa tgccaaaata ggctcaaatg ctgtagtggt taaagatata
    28861 ggtgcaaatt taactgccgt tggaattcct gcttatatta tcgaagagcg taaaaataaa
    28921 aacattagag ccatagatgc aaattgcgat gacaaactag aaaagttaga aaagaaaatt
    28981 ttagaacttg aaaatcttat attaaaacaa cctgaatcac aaaaataata attttttata
    29041 atacataaaa ttatatgtat tattatgcgt attaattttt cctaaaaatt aatacaaatt
    29101 ttcacattta ttgaaattta caactcattt ttaaattaaa tttattgtaa aaatgcaatt
    29161 ttctgctaaa attaaacaaa aattatcaag gattgaaaaa tgcttacaaa aagatctcaa
    29221 gttttagaag aatctatcac tttagctatc actgcacttg ccaatgaact taaagccaaa
    29281 ggcgaggata tcattagttt ttcagcgggt gaacctgatt ttgacacacc acaaaccatc
    29341 aaaaatgccg ctataagtgc tattgaaaaa ggatgtggaa aatacactgc tgttgcagga
    29401 attcctgaag tattaaaagc tattcaaacc aaatttaaaa aagataataa tcttgattat
    29461 gaaacaaatg aaatcatcac caatgtaggc gcaaaacact ctctttttga atgtatagaa
    29521 tgcttagtag aaaaagatga tgaagtgatt atccctagtc cttactgggt aagctatcct
    29581 gaaatggtaa aatttgcagg tggaaaacct gtatttatag aaggcttaga agaaaatggc
    29641 tttaaaatta ccgctgaaca attaaaaaaa gctatcacag ctaaaaccaa agttttgatg
    29701 ctaaattctc cttcaaatcc tgtgggatcg atttattcta aagaagaatt aactcaaatt
    29761 gctaaagttt tagaaggaac gcaaattact gttttaagtg atgaaatgta tgaaaaactt
    29821 cgctatgatg gttttgattt tgtagctttt gcaagtgtaa gcaaagatgc tttaaaacgc
    29881 actgtgacca ttaacggact tagcaaatgt ggagctatgc caggatggcg ttttggctat
    29941 atggcaagca aaaataaagc cctaatttca gccgttaaaa gacttcaagg acaaagcact
    30001 tcaaatattt gctctatcac tcaacatgca gccattcctg ctttaaatgg agaatgtgat
    30061 aaagatatag aaaaaatgcg tcaagccttt gaaaaacgcc gtaacttagc cttagacata
    30121 cttaaacaaa tcccaaatat cagtgtttat aaaccagaag gtgcttttta tctttttgta
    30181 aatatacaaa aaatagaaaa agattctatg aaattttgtc aaaagttact tgaacaagaa
    30241 aaagttgccg ttgttccagg tgtaggtttt ggaatggatg gatacttcag actttcttat
    30301 gctacaagcg atgagcttat caaaaaaggt ttagaaagaa tagcaaattt cattaaaaac
    30361 tataaataat tctaggttaa agcctagaat tatttaggca aattaaaacc ttataaaatc
    30421 aaggcttttt aagcacagca tttacccttt gaacactatc tgatttattt aaactcaatc
    30481 ttattataga attttctaat ccacctaaag aatgtgctac atttgcctct aggcttatca
    30541 tatctaaagc atttaattca aatttttcct tttccacttc aaaccaaatt ttaccgctta
    30601 aaacttgaac atgtatagca aaaggagctt tatgctcttt catcacactg tctttagcta
    30661 ataaaatttg aatttcttta cctttttcat tgtcaattaa aacattgatt ttcacttctt
    30721 ttgggctaaa ttccgctcca ttccattgaa tgattttcac aaaatctcct tttttagttt
    30781 tacaaaacta tagcaaaagc caaaatataa attataaact tgtgttaatt tattcttctt
    30841 tccaccaaaa atcctgttta aatttagctc ctacttcata agcctcgccc atttttggtg
    30901 tgataagggg taaatctaaa ttttcataaa gaaattttac cacctcattc catgcatgag
    30961 ttcctgctaa aaatctcccc caatgtatag gcatgacagc ctttgcatta agatcttttg
    31021 cctcttttaa aatttgctca ggaaaagagt gtgaatatgg ccaagcgata ttaaattgtc
    31081 cgctttcaag acaagctagg tcaaaacttc caaaatactc acctattttt ttaaaatgtg
    31141 taaaataccc tccatctgcg ctaaaaaaca ctctcttatc tacacttaaa aattccatca
    31201 caaaagaagc ccaaagggtt ttgtttttac catctcccct acttgaactg tgctgtgcag
    31261 gtgttgccat gatttttaaa tcaccaaatt ctattccact ccaccaatca agctctatga
    31321 tttttttctc gctcacccca tagcttttta gataatttcc cacttttaaa ggagtgataa
    31381 aaaatttagc cttatctttt aaagctttta cactcttagc atctaaatga tcaaaatgcg
    31441 aatgcgtgat aatcacagca aaaatttcat taaaatcatt tatattataa acaggagcat
    31501 ttttaaaagc cttgttgata aaagaaatgg gcgaagcatg agtgttaaaa ataggatcaa
    31561 tcaaaatttt atactcttta aaacttataa aaagcgaaga atggccaagc caagtaatat
    31621 gtggggtgct aaaaccactc aaatcaggct tgaaaaaagg taacttaaaa gaagggatgg
    31681 cattttttgg ataaagataa taatacctca aaatttcttt aaaagacact ttaggagtta
    31741 taagactgtg ctcattttca ttaagaaaaa tttcatattt tttaccctgc acttttttag
    31801 cttttgatcg ttgtgtattg gaaatatcaa agattttaaa tgataaa
//
LOCUS       DARBAR010000004        29114 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.004, whole genome shotgun sequence.
ACCESSION   DARBAR010000004 DARBAR010000000
VERSION     DARBAR010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29114
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.004"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            29..880
                     /locus_tag="SB815_000111"
     CDS             29..880
                     /locus_tag="SB815_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HEG0905891.1"
                     /translation="MKFYTILSILFISFMLSACAVLQKSSPLQENKDFYILDTHTQKK
                     ISFEDMILELLKADVILLGEKHDEVKHKISQVMIFNALEGNLSSQNINFDVALEMLAS
                     TEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGANLSRS
                     EITSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLVEIQQFKDRR
                     MADVLVHHVNKVLLLAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLSYGEIDLKDSDYV
                     LIYKGEE"
     gene            877..3144
                     /locus_tag="SB815_000112"
     CDS             877..3144
                     /locus_tag="SB815_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG0905892.1"
                     /translation="MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVT
                     PGATSTREGIGSDTQSIDSIVRSIPGTYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGV
                     TQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGGANALMGSANF
                     KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKR
                     ITQNYTVGGGGKIGSSMVDTDGDGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTN
                     TIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQGIQTYGSKSTFAAN
                     DAIANTKAKNTATTFDISDTLEGEWHRFNLNIRFGANILLNDYKNTLNTSIQGVNSIP
                     FQPRGKQNLFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDI
                     DKNGLRLNASVMLSAAIHELITPFVSFARTNRAPNVQEMFFSNNEGNGINSFLKPEQA
                     NTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKDPPSSQFYMH
                     LNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELP
                     KDYANVELGFRLNDKISFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKI
                     PIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYNSLDNQLQYNGAGDPIYLFSN
                     SARGRTFIVSFEYKY"
     gene            3156..3917
                     /locus_tag="SB815_000113"
     CDS             3156..3917
                     /locus_tag="SB815_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG0905893.1"
                     /translation="MLKKCFYFVFLLLNLNAEANATDTNLSFDSSKIETEAPKIELSL
                     SSLYQNADEVVKGVIYILVLFSILAWAVFISKLMQFYFMKKNLDLSIQKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERIELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            3904..4314
                     /locus_tag="SB815_000114"
     CDS             3904..4314
                     /locus_tag="SB815_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEG0905894.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            4316..5062
                     /locus_tag="SB815_000115"
     CDS             4316..5062
                     /locus_tag="SB815_000115"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG0905895.1"
                     /translation="MKSSVIFGFVLSLILHTLVLMFFLFSFYTQEKSSGVDFKQGAEF
                     TSIMMVSEFPIGELKEVSIDQKKSNSQDKNKKQDERISFNSQDKNAVLKVQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNKDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEALSLFKRASPLP
                     KPPKEMLKNGDKISFVMPIDYNIKDYLGKK"
     gene            5108..6313
                     /locus_tag="SB815_000116"
     CDS             5108..6313
                     /locus_tag="SB815_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HEG0905896.1"
                     /translation="MIMFSSFFKSKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSD
                     FYNVLQKPKIELLDSNSTQKIEENLENNATLIQEANQRAEQNFQKANFINKGALYYYQ
                     NLLEYFFNSRAMIEKPNYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREA
                     MTFSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSL
                     SDVVSKALFANLSENSFFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQ
                     KAEAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMI
                     VIVPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSIFITNWTTITQLRSIYKRLKE
                     FEKNISYKS"
     gene            6412..7770
                     /locus_tag="SB815_000117"
     CDS             6412..7770
                     /locus_tag="SB815_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEG0905897.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSILMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTMAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(7783..8967)
                     /locus_tag="SB815_000118"
     CDS             complement(7783..8967)
                     /locus_tag="SB815_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEG0905898.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFSIINAYNETLKIYKDLAKQYRYKIYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSRDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(8977..9186)
                     /locus_tag="SB815_000119"
     CDS             complement(8977..9186)
                     /locus_tag="SB815_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEG0905899.1"
                     /translation="MAKDANGIELNAGDSVSIIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            complement(9179..9898)
                     /locus_tag="SB815_000120"
     CDS             complement(9179..9898)
                     /locus_tag="SB815_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEG0905900.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQKKEKNG"
     gene            complement(9970..10536)
                     /gene="purN"
                     /locus_tag="SB815_000121"
     CDS             complement(9970..10536)
                     /gene="purN"
                     /locus_tag="SB815_000121"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEG0905901.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEIVLCLCNKKD
                     AFGIQRAKKFGLNTVIIDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            complement(10527..11897)
                     /locus_tag="SB815_000122"
     CDS             complement(10527..11897)
                     /locus_tag="SB815_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HEG0905902.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITFCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            complement(11881..12579)
                     /locus_tag="SB815_000123"
     CDS             complement(11881..12579)
                     /locus_tag="SB815_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEG0905903.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            complement(12581..14086)
                     /locus_tag="SB815_000124"
     CDS             complement(12581..14086)
                     /locus_tag="SB815_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEG0905904.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNISKTHILEALSFRARN"
     gene            complement(14083..14610)
                     /locus_tag="SB815_000125"
     CDS             complement(14083..14610)
                     /locus_tag="SB815_000125"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEG0905905.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            complement(14646..15230)
                     /gene="clpP"
                     /locus_tag="SB815_000126"
     CDS             complement(14646..15230)
                     /gene="clpP"
                     /locus_tag="SB815_000126"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEG0905906.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            complement(15230..16564)
                     /locus_tag="SB815_000127"
     CDS             complement(15230..16564)
                     /locus_tag="SB815_000127"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEG0905907.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKSEKVSKKEKEDK"
     gene            16707..17279
                     /gene="folE"
                     /locus_tag="SB815_000128"
     CDS             16707..17279
                     /gene="folE"
                     /locus_tag="SB815_000128"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEG0905908.1"
                     /translation="MQKKFEDCVKTMLEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKEILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGVQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            17279..18664
                     /gene="fliI"
                     /locus_tag="SB815_000129"
     CDS             17279..18664
                     /gene="fliI"
                     /locus_tag="SB815_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HEG0905909.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEATKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(18667..20004)
                     /locus_tag="SB815_000130"
     CDS             complement(18667..20004)
                     /locus_tag="SB815_000130"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEG0905910.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYVVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(20006..20734)
                     /locus_tag="SB815_000131"
     CDS             complement(20006..20734)
                     /locus_tag="SB815_000131"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEG0905911.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQARISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            complement(20797..21978)
                     /locus_tag="SB815_000132"
     CDS             complement(20797..21978)
                     /locus_tag="SB815_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEG0905912.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGAKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTINSEGVSSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNA
                     LNLAVSTLDAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLGKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
     gene            complement(21978..23099)
                     /locus_tag="SB815_000133"
     CDS             complement(21978..23099)
                     /locus_tag="SB815_000133"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905913.1"
                     /translation="MKKWIFIVFCFILGFIIHIFYIGYTNELLFNKFIKNSNPDYTIT
                     DIYFKKGFLTSKGSFTLNHSHTQLSTKINLKFNNYFFLNKIIKGNFTNPFDFLDEVLK
                     NNKLGTFTLKLHDNNSKIFLNIKDINLSNEGGDTIINGGYIEVLMNKNLEIKNMKIHF
                     DMINFSQFYTKFVLQNLNYEQFFNNPVQFYELNLFSDSQQEINFDYLVLDNNKINSFY
                     SKNQVNFNEENSAVNLNIQGKSNEIDLKSLLGQNLNFDKTKFNITINKFFNSNFNISH
                     FIQKNLDLKIQNLILEKNKQNISLQGNLNINNSYQAKLQVISSDEPDEIFPWTKDYGG
                     LNQYFLKENNNFFLNLSYDSLANPQLKINGSEFSNMDLN"
     gene            complement(23234..23581)
                     /locus_tag="SB815_000134"
     CDS             complement(23234..23581)
                     /locus_tag="SB815_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905914.1"
                     /translation="MKKSILFASALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGTPATPNTQAIPV
                     ARKIEIQCYKKAY"
     gene            complement(23645..24250)
                     /locus_tag="SB815_000135"
     CDS             complement(23645..24250)
                     /locus_tag="SB815_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905915.1"
                     /translation="MFYLNKILYFFLILFLLIGILGFFINSNPSNQIIKKPYLPFLEI
                     GDLVFRAGIGSESFLIENLSQSPYSHIAMVVKTSPTILIHATTDDDKNAKNQVILSSM
                     DDFLKLSHKIAIKRLKFDEKTKQKIVAKDLEHLGRKFIISTDKDAFYCTTFLEQSINS
                     ITPFHLQYTLIKAPFNEGLYLFPQTFFENNQSVLIYESQNF"
     gene            complement(24234..24575)
                     /locus_tag="SB815_000136"
     CDS             complement(24234..24575)
                     /locus_tag="SB815_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
                     /protein_id="HEG0905916.1"
                     /translation="MAYGSSNPEDLAKNFTKDLYSGDTKSVMSYIDLSEAKSDEEKTF
                     VSDKITQVVAENAAKAKRMGGVKDIQIEEKTINKDSAKIRVLVLFNNDNNQSSNVFLA
                     KKDRKWLVLLK"
     gene            24818..26164
                     /locus_tag="SB815_000137"
     CDS             24818..26164
                     /locus_tag="SB815_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HEG0905917.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYICFM
                     IGLAIILPLNYPNLKTAKKVLDRASAGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
     gene            26347..28344
                     /locus_tag="SB815_000138"
     CDS             26347..28344
                     /locus_tag="SB815_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
                     /protein_id="HEG0905918.1"
                     /translation="MMYKKQNLPELTLRGLILGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSTKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILKGTQKMSLPPLAVGIGIYLPPAVNIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
     gene            28418..>29114
                     /locus_tag="SB815_000139"
     CDS             28418..>29114
                     /locus_tag="SB815_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEG0905919.1"
                     /translation="MENLYALILGIIEGLTEFLPISSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLEFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLGNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFIS"
BASE COUNT         9602 a         4366 c         4506 g        10640 t
ORIGIN      
        1 ataaaccact aagaaagtaa caataataat gaaattttat actattttaa gcattctatt
       61 tataagcttt atgttgagcg cttgtgctgt tttgcaaaaa tcatctccac ttcaagaaaa
      121 taaagatttt tatatacttg atacgcatac tcaaaaaaag atttcttttg aagatatgat
      181 tttagaattg ctaaaagcag atgtgatact gcttggcgaa aaacacgatg aggttaaaca
      241 taagataagt caagttatga tttttaatgc cttagaagga aatttaagtt ctcaaaatat
      301 aaactttgat gtagctttag aaatgttagc aagcacagag caaaatcact tagataaagc
      361 ttttaaaaat aaaaaaacca ttaaagccaa tgaacttact aatgcattaa attgggataa
      421 ggtctggaaa tggaaagatt atgagcaatt tgtcaatgtg gttttttatt caaagtcaaa
      481 aatattaggt gcaaatcttt cacgctcaga aattacaagc atttataatg gggctcagcc
      541 cttaaagggt tatgtttcaa ccacaaatga agtaaaaaaa caactttttg acattatatc
      601 cttaagccat aagctaaatc ctgaagaaaa taaagaatta ctagataaat tggtggaaat
      661 tcaacaattc aaagacaggc gtatggctga tgtattggtt catcatgtaa ataaagtttt
      721 attgctagct ggaagctatc atacaagtaa aaaaatagga attcctttac atatacaaga
      781 ttttaaaagc agtaaaaaaa tagttgtggt gaatttaagc tatggagaaa tagatttaaa
      841 agacagtgat tatgttttga tttataaggg ggaggaatga aaaaattaag tttattttgt
      901 gctgtaggtt tatgttttgc tagttttgct ttttctgaag aattagaatt tgatagtctt
      961 gaaatttcag gttcaaaaat caaaaacgat gaaaaacctt ttgtaactcc tggggcaaca
     1021 agcacaagag agggtatagg ttcagataca caaagtatag attctatagt gcgtagtata
     1081 cctggaacct acacaaacac agatcaagct caaggcacag ttcaagtaaa tattcgtggt
     1141 atgagtggtt ttgggcgtgt taataccatg attgacggtg ttactcaaac tttttatggt
     1201 agtgcatcag atgatccagc tagatttcat tcacaaacgg gaacttcagc ttttggagct
     1261 gttattgata caaatttctt aatcggagtt gatgttacaa ggggaacttt tgaaggagta
     1321 ggtggagcaa atgccttgat gggatcagca aattttaaga ccataggtat aaatgatatt
     1381 gtacatgatg gcaatatctt tggattttta ggacgatttt cttatggaag caatggaatc
     1441 ggaccaagtt atatgagtgc agtggctgga aagactgaac ttgaaaataa tggatatgtg
     1501 ggcgcgcttt ttggttatag cgcaaagaga attactcaaa attacactgt aggcgggggt
     1561 ggcaagatag gtagtagtat ggttgatact gatggagatg gtatagctga taccaatatc
     1621 gctccttttg atccagattt tttaacccaa aaaccaaact ctcaactttt taaactcgaa
     1681 tatgtcccaa attcttttac aaacactata ttttcttatc gtagatatca aaacgaactt
     1741 gccggtagaa aaatacacaa tgacaattat caacttgatt tttggcacaa ccctaatgag
     1801 tggcttaatg taaatacgct tattgcctac aatcaaggca tacaaaccta tggatcaaaa
     1861 tctacttttg cggcaaacga tgccatagct aacacaaagg caaaaaatac tgccactact
     1921 tttgatataa gtgatacttt agagggtgaa tggcatagat ttaatctaaa catacgcttt
     1981 ggagcaaata ttttgcttaa tgattataaa aataccttaa atacatcaat tcaaggagta
     2041 aattctatac cttttcagcc tcgtggaaaa caaaatcttt ttacttatta tcttgataat
     2101 agtctaaatt atggtatctt tacacttgat accaatgtga atcttttaga ttggaatatc
     2161 aaaggacaca gacctgcttg cgatgaagta aattttatgt gttttccaaa agcggcgaca
     2221 gatatagata aaaatggact tcgcctgaat gcttctgtca tgctttcagc tgccatacac
     2281 gagcttatta caccctttgt aagttttgcg agaacaaata gagcccctaa tgtgcaagaa
     2341 atgtttttct caaataacga aggcaatggt atcaattctt tcttaaaacc agaacaagcc
     2401 aatacttggc aaataggttt taattctttt aaacatggac ttttaaaaga tgatgatcgc
     2461 tttggtttta aagccgtgta ttatcataca aaaataaaag attatattta taatgaacaa
     2521 ttttatcttg aagatccaag taaagatcct ccaagctcgc aattttatat gcacttaaat
     2581 tcagctgatg ataccatatt taagggtgtg gagttagaat taagctatga cttgggtttt
     2641 gcttatgcta aagctatgta ttcaagacaa gatacaagtt cgactatttc tcaaacttca
     2701 ggacctcttc ttggctcttt ttcggcaagt aaaatcatgg agcttccaaa agattatgca
     2761 aatgtagagc ttggctttag gttaaatgat aaaataagct ttggtggtat agcaaaatac
     2821 acaggcaaag caaaaagggt aaatccaaat acagatgatt ggaataagga tccaaacaat
     2881 ccttattatc ctaaaccaac cacacaagac ttaccaaaaa ttcctattat agtagattta
     2941 tattggaata tagaatggtt taaaaacctc acaatgagag cagaggtgca aaatttattt
     3001 gataaaaact acatggatgc cttaaatgct tataattcct tagataatca gcttcaatat
     3061 aatggagcag gtgatcctat ctatcttttt agcaattctg ctcgcggtcg tacttttata
     3121 gtaagttttg aatataaata ttaaggaata tacaaatgtt aaaaaaatgt ttttattttg
     3181 tttttttatt gttaaattta aatgcagaag caaatgcaac agatacaaat ttatcttttg
     3241 attcttctaa gatagaaacc gaagcaccta aaatagagct ttctctttct agtctttatc
     3301 aaaatgctga tgaggtggta aaaggtgtta tttatatatt ggttttattt tccattttag
     3361 catgggcagt ttttatttct aagcttatgc aattttattt tatgaaaaaa aatctagact
     3421 tgtctataca aaagataaaa gaattaaaaa atctcaatga attagatcag acaaaagatt
     3481 ttgcaggtgt tttatcttta gaaattcaag atgagcttga aaaaagtgaa tataaaaatg
     3541 atcacataaa agagcgtata gaattgcgtt tgcaaaatac catctcaaag caaatcacag
     3601 caagcaaaaa tggcttgagt ttgcttgcga gcataggtgc tagcgcacct tttatagggc
     3661 tttttggaac agtttgggga attatgaatg catttatagg tatagcaaat cttggcaatg
     3721 cttctttggc agtcgttgcg cctggtatag ctgaagcctt gtttgctaca gcttttggct
     3781 tgatagctgc tatccctgcg gtgctttttt ataattatct tacaagaaaa aatttaaaac
     3841 ttatgcacca tttagatgag cttgcaaatt ttgtctatat actttttcat aggagttatt
     3901 ttaatgataa aaactgaaat ggctcacaaa gaagaggagt taagtgagat caatataact
     3961 ccttttatag atattatgct tgtattattg attgttttta tggctgttac tcctcttatc
     4021 acaagttcta tcaaaataga attacccaag agttcgcagc aagcagagga taagcttaaa
     4081 aatcccatca tactttattt aaatactgat aatactttgg ctattaatga tgataaatta
     4141 agcctagaaa atctttcaag tgctttagat ataaaaacca aaggcaataa agaagaaatt
     4201 atttattttc atatcgataa aagtgtaaag tatgaagata ttatgcaagt aatgcaaaaa
     4261 ttaaaagaga atggctatgg aaaaatagct ctttcaagta aaaagatgga ttagtatgaa
     4321 gtctagtgtg atttttgggt ttgtgttaag tttgatattg catactttag tattaatgtt
     4381 tttccttttt tctttttata ctcaagaaaa atcaagtggt gttgatttta aacaaggagc
     4441 ggaatttact tccattatga tggtatcaga gtttcctatc ggggaattaa aagaagtttc
     4501 gattgatcaa aaaaagagta attctcaaga taaaaacaaa aaacaagacg aaagaataag
     4561 ttttaattct caagataaaa atgctgtatt aaaagttcaa aaaaagattg aaaagcaaga
     4621 tgaaaaccaa gctcaaaaag aaatagctaa tgcaagtgaa aattcaaaat ttaaaaatga
     4681 atcgctcagt gctccgctac aaagtaataa agataaaaca caaactatag taagtggcaa
     4741 tgccaaagaa caagttaaaa gctatcaagc tttgcttatg gctcatttga ctaaatttaa
     4801 aaaatatcct caagaagcga taatgcaaaa acaagaaggc gttgtaagaa ttcgcgtaag
     4861 cattgatgaa agcggaaatg tcttaagcaa agagcttaaa aaatcttgcc cttatgcagc
     4921 gctcaatgat gaagctttaa gtttatttaa aagagcttct ccattgccaa aaccgcctaa
     4981 agaaatgtta aaaaatggtg ataaaatcag ttttgttatg cctattgatt acaatattaa
     5041 agactattta ggtaaaaaat aaacttttca ttaaaaaaag tttattagaa tttttatttt
     5101 aaaggtgatg attatgttct cttcgttttt taaaagtaaa aaatgggctt tatgggctta
     5161 tttgggactt tttttactgt tatttttctt atatatacaa acaagcttaa atgttgcgat
     5221 caattcatgg tatagtgatt tttacaatgt tttacaaaag ccaaaaatag aacttttgga
     5281 ttctaattct acgcaaaaaa tagaagaaaa tcttgaaaat aatgccactt taatccaaga
     5341 ggctaatcaa agagctgagc aaaatttcca aaaagctaat tttatcaata aaggcgcatt
     5401 gtattattat caaaatttat tagaatattt tttcaactct agggctatga ttgaaaagcc
     5461 aaattattca gcaagtgatt tttatgcttt gattttagtt tttttggcta ttgctattcc
     5521 ttatgtttta atcgctacaa ttaatatcta ttttgctagc gtctatgctt ttaagtggcg
     5581 tgaggctatg actttttctt atttaaaatt ttggaaaaat aaagatgata atatagaagg
     5641 aagttcgcaa agaattcaag aagatactta taatttttct aaaatcgtag agagtttagg
     5701 acttagtttt ataaaagctt tgatgaccct tgtagcattt attccgattt tatggagttt
     5761 aagtgatgtt gtgagtaaag ctttatttgc aaatttaagc gaaaattctt ttttttattt
     5821 tttaaaaaac attgatggtt tgcttgttta tattgcactt ttgatttctt taggaggctt
     5881 ggttgtgtca tggtttgtag gtattaagct tcctggactt gaatataaca atcaaaaagc
     5941 tgaagcagct tttagaaaag agcttgttta tgctgaggat aatcgcaaag aatacgctaa
     6001 aaatgagact atgatagagc tttttacagg gcttaaattt aactataaaa gacttttttt
     6061 acattatgga tattttaata tttggctcat tttatttgag caaatgatag ttatagtgcc
     6121 atttttaatc atggcaccag ggctttttgc tggagctata ggacttggta ttgtaatgca
     6181 gattaataat gcatttgatc aagtgcgaag ctcttttagt atttttatca caaactggac
     6241 aactatcact caacttagaa gtatatataa gcgtttaaaa gaatttgaga aaaatatttc
     6301 ttataagtct tagttttttc ttataaaata caagaaaaaa ttcaaatatt aaatttactt
     6361 ttaattgtgt ataataaggt ttaataatat tttatttctt aaggagcttc attggacccc
     6421 agtcaggttt tggatttaaa ccaaacttct acagcatctt ttgatgcagg atattctata
     6481 cttatggttg ttgttgcact tgctctagtg tttttaaatg gtttttttgt tttgtctgaa
     6541 tttagtattg ttaaagtacg tcgttccaag cttgaagaga tggtaaaaga aaaaaaagct
     6601 ggtgccaaga aagctttgga ggttacttca agacttgata cttatcttag tgcttgtcaa
     6661 ttaggaatca ctttaagttc tctagctctt ggttggatag gtgagcctgc tattgcaaaa
     6721 atgctagaaa ttccgcttat taatcttggt tttagcactg ttattatcca tactatggct
     6781 ttcattattg cttttagcat tattactctt ttacatgtgg ttttaggaga acttgtgcca
     6841 aaaagtatag ctattgcagt tgcagataaa gcggttttat ttatagctag accgcttcat
     6901 tggttttgga tgctcttttt gccttgtatt aaaattttcg attttttagc agctataagt
     6961 ttgaaacttt ttggaataaa acctgctaaa gaaagcgagc taactcatag cgaagaagaa
     7021 attaaaatca tagcaagtga gagtcaaaaa ggtggagttt tagatgaatt tgaaacagag
     7081 atcatacgca atgctgttga tttttcagat actgttgcta aagagattat gactcctaga
     7141 aaagatatga tttgtctaaa taaacaaaaa agttacgaag aaaatatgca aatcatttgt
     7201 gagcataaac atactcgctt tccttatatt gatggctcta aagatactat tttaggtatg
     7261 atacacatac gagatataat acaaaatgaa ttaaaccata aaagtcaaaa tttagatact
     7321 tttgttaaac ctttgatttt ggttcctgaa aatatcagca tttcaaaagt acttgtaatg
     7381 atgaataaag aacgctctca tactgcatta gtagttgatg agtatggtgg aactgctgga
     7441 attttaacca tggaagatat catggaagaa attattggcg aaattaaaag cgagcatgaa
     7501 gaagacagct ataaaaaact tgctgaaaat atctatgaat ttcaaggacg atgcgatata
     7561 gaaactgttg aagaaatgct tgtaataaac tatgatgagg atttagaaca agttactata
     7621 ggtggttatg tatttaatct tttaggacgc ttgcctatgg taggagatcg cattgaagat
     7681 gaactttgtt actatgaagt taaaaaaatg gatgggaatt ctatagagcg tgttaaggtg
     7741 gttaaaaaaa caaataaaga tgaagaataa gcctctttag gcttatttct ttttgtaaat
     7801 ttggttttta atttctatac actcaaaacc tttttcatct agtgtaacta cgcgtaaata
     7861 tccaccatca tctattttac cctcgcataa aaatactctt ttggctattt tcataggaag
     7921 tttttcttta tttctgtgtc caaagatttg ataaagattg tccgaggtga aattacaaaa
     7981 ttgatttgct actttttgac tgtcttcata tccacctaca ccataaataa agtcatggct
     8041 tggtataaaa cttatttttt caggtttgga gggtataaaa tttactcctc catgtgaaca
     8101 aaatatgaat ttattttgga atttgtagta taaacattct tttagatgag gatagagttt
     8161 tctagcatct cttggagtaa gtttttcttt tctaaaatcc tttaaagtat tttcattaaa
     8221 ttctttggaa tttgacaatt ctccattagc ccattttata agatgtcttt cgtgatttcc
     8281 ttctaataag catacgtttt ctttttcgca aatttttaaa agaaatttta ttactttgcc
     8341 attttctata cctctgttga tataatctcc caaaaatata taaaattcat cttctttgat
     8401 tgttttaatg tattctttta aaacactata gcaaccttgt aaatctccta tatgatgaat
     8461 ttttttgtat ttgcttaaat ttggcatttg gtaaagacat tttttccagt ctcttgagtc
     8521 taaaattggg tatttttttg gatttttttt gagcaaatct tgagtttttt ccaaaagagc
     8581 ataaggaatg atatatccat tttttttagc ttctaaaaga tttttttctt gacattgttt
     8641 taaagagcta tcaaaaacaa taacatatat tttatagcga tattgtttag ctaagtcttt
     8701 ataaattttt aatgtttcgt tgtaagcgtt tatgatgcta aactcacctt tttgcatacg
     8761 catttctaga agtttgagta aaattttact caaatcttca tcatttttaa catttaaaat
     8821 tttatattca ctgactatat ttttaacgct tcctgataaa agacgcaaag catttaaatc
     8881 aagtgtataa ttttgaagtt tattattttt gataaattct tcttgtcctg cgtaataatt
     8941 ccctcttaaa acaagtaaga ttcgcacatt ctttgcctag attttcttta aaaattcagt
     9001 ttttaaaaca ataacgccaa atttatctac tctagcctca atttcacctt ctttagaagt
     9061 gagcttaata ttttttatag tagttccacg ttttaaagtt gtacttgcac ctttaacctt
     9121 aagatctttt attatactca cgctatcacc tgcgttaagt tctattccat tagcgtcttt
     9181 agccattttt ttcctttttt tgatctaaaa tatttaaaat ttgcaccact aaagcaaaag
     9241 ccatagcagt ataaatatat gccttatcaa tatgaatatc aaaactttca gcaactaaaa
     9301 ctacgcctat tagcaccaaa aaagctaagg ctaaaatttt aatgcttgga tatttttcaa
     9361 caaaatctgc tataggttta gaagcaaaaa gcatcacagc taccgcgata ataacagcga
     9421 taatcatgat ggttacatct tgagcaattc ctactgcggt aataacacta tcaagcgaaa
     9481 acactatgtc aatcacagca atttcagcta caactatcca aagtttattg cttgctttaa
     9541 aatgactttg actttcttct tgatgagaaa tttgctcttt aatttcttta atagacttta
     9601 caatcaagaa aagcccacct agtaaaagaa ctagatctct tcctgaaatt tcattgccca
     9661 atacactaaa caaaggtgtt acaagtttca tcacccaaaa aagagataaa agaagtaaaa
     9721 ttcttgtaat cattgcaaaa gctaaaccta agatacgtcc tttatcacga tgttcagggg
     9781 gtagtttgct tactaaaata gctaaaaaaa tgatattatc tatccctagt acaatttcaa
     9841 gagcacttaa agtagctaaa gtaatccaag catcaatact aaatatccat tcaaacataa
     9901 atttccttga aaattttaaa attttttaaa gcgatatttt atagttttaa agcaaatacc
     9961 tttaattctt taagaaaaaa tttcaatcac acttaagggt aaaatttcat gttctagact
    10021 atgaattttt tcttcaaatt cttcaaaact caaatttctt ttttcaaaag ctttttgagc
    10081 tataatcatt ccaccatcaa gttcttcact gacccaatgc acactcacac cagccacttt
    10141 catatcactt tcataacttt ctttaattgc atgtgctcct ttaaaaaggg gtaataaaga
    10201 aggatgaagg ttaattgcct taatattttt tgtaaaaaca ggacttaaaa ttctcataaa
    10261 acctgccaat acagtaagat ttgctccact ttctttgatt ttttgtacta aaattgtatc
    10321 aaattcttca cgagtattat aagccttatg atcaataatt acagtattaa gaccaaattt
    10381 ttttgctctt tgtataccaa aagcatcttt tttattgcaa aggcaaagta ctatttcata
    10441 ggtattttcc cctatggttt ttttatgaag tttttctaaa atattttcta agttactccc
    10501 atttccacta aaaagtacag ctaattttac aagcatttta atcctttgat aagttttaaa
    10561 gcgtcaaagc tatttttatt aaatttatat ttttttgcaa caagtccatg agctaaagta
    10621 gcattttttg ctgcttctaa agcgctaaaa ccaaaaccta aatgtgcagc aatcattcca
    10681 cttaaaacat ctccactccc acctttagct aaggcttgat ttcctaaatt tacaacaaat
    10741 aatttttctt tttgcacaat aataggattt gctcctttta aaacaagaac acaatcataa
    10801 ttttgtgaaa attttctagc atagaaaaag cgattttttt gcaatgtttc tatatctaaa
    10861 ttctcatcaa agcacatttt ataaagtttt ataaattctt ttggatgagg ggttataaca
    10921 acatcttttc tgtttaaata ccaaagcaaa gcttcactta aaaagcagtt tgcatccaag
    10981 atcaaaggag tgttttgcaa aatttcatct tttagaaaat ccaaattttc aagccccata
    11041 cctaaagcaa tagcacttgc attattttca attttttctt ttaacatcaa aagaggcgag
    11101 aaactttttt gtgctactaa agaaacaaga cctgctccaa aatttaaggc tccaagtcct
    11161 gctaaagttc cagcacttgc attggcaact atataaatat ggccaaaatt tcctttattg
    11221 gcgttgattt ttctatctat agtttttaaa tctttttttt caagcaaaaa agcttgagaa
    11281 ttagggtaaa atttcttaga tctaatgcct aaattggcta ttttaatcct tcctacaaat
    11341 tccttagcaa aatcttcaag taaaatttcc tttaaagctc ccatacaaaa tgtaatatca
    11401 gctttaaaac aaggataaaa tcccaaattt gtaggtatat cacaagctat ttttaaagcc
    11461 ttactttgat taactttttg aataattaaa cttgtttttt catctaaaca acgatttgaa
    11521 cctgtaccta aaatacaatc aatgataata tgaaattttt taaaattggg ttctttttta
    11581 caaaatttaa aagcataatt ttgtaaaatt tgctcttgtt ttttaaaaag cgtattttct
    11641 ttaaagccta ttttataagc tttagcgtgt tttaaatttc ttaaagccac caagccatct
    11701 gaagcgttgt tacccccgcc taataaaaaa agtattttta cttttctaat cttgcgttga
    11761 atgcgaattt ttttagcttc ttttttaatt agcttggcta aatttaatcc cgcattttcc
    11821 attaaaataa gctcatctaa gcctttattt atagcatttt gttctaaaat ttttatatta
    11881 tcaataatag ctttcataat cttttttcac caaaaaatat atattttttt ctctttcttc
    11941 ttcaaatttt ttcattttgg gtaaaaattt ctggatcaaa gcacgaaaat tcttaaaacc
    12001 ataattttgc ggatgaaaat ccgagtattt gcggttcata ttagtacgga tttgtgcgta
    12061 ttcggcacgc cctttttcat cgataagttg ttcggtgata ttgattaaag ctcttaaata
    12121 atccttactt aaaatatctt cttttttact ctcatcttta tctaaataaa aaaattcact
    12181 aaaggcattt acataagatt ttatagactt ttcaagcccc attcctataa cttgtttttt
    12241 attttctctt aatttttgaa tgagtgaagt ataatcacta tcgcttgaaa caataacaaa
    12301 aatatctata tttttttcat aaaatatgga cataatttca gtgattaaat acatatcgct
    12361 tgagtttttg ttggctgcaa aattaaattg ttgcatagcg attaaagaat attcagcaat
    12421 ttgctctctc caaccttgta tatttttttg agtccaatcc ccataaatgc gtttaatgat
    12481 aacctctccg taatctgaag cgatatcaaa aatactttta gcgtattttg cagggatatt
    12541 ttctgcatct ataaagatag ctatactttt attttccatt ttaattcctt gctctaaagc
    12601 ttaaagcttc taaaatatgg gttttgctaa tattaagact ttgttctaaa tccgctatac
    12661 ttcttgaaac ttttaaaatt ttattaagcg atcgcaaaga aagattataa cgtgaaattg
    12721 ctaaatctag cgtatctttg gcatcttttt ccaatacaca aaaacgactt aaatcttcat
    12781 cttttaattt cccattaaat tctttttgcc cccgtttttt actaaaaata aaagcttgta
    12841 aaattttttc actcatttct ttagaactta tactcgtttt atcatccttg ctgatctcat
    12901 ccatagctac ataaagatca atcctatcca taataggagc tgaaatgtga tttttgtatt
    12961 ttttaatctc attttcacta caaacacaag aaagattttt ggagaataaa tttccacaag
    13021 gacaaggatt ttgggcagct ataaagctaa attttgtttc ataagtgatt ttagaattta
    13081 ctcttgaaat atgaatttta tgatcctcta aaggttctct taaactctct atgatttgct
    13141 tgttaaaatg tggaaattca tcaaaaaaca atactccacc atttgcaagt gctacttctc
    13201 caattctggc attttttgtt cctccgccaa aaatacttgc tcttgtagaa gtatgatgag
    13261 gatgacgaaa agcacgaatt ttagtaaatt cacaatcttt tgaatctaaa gacatataag
    13321 cattttgcat taaaatttca cttaaacttt gagggggcat gatataaaca aggcgtttag
    13381 cacacatgct tttaccactt cctggacttc cttcaaataa gatattatgc atacctaaag
    13441 cagctatcat acaagctctt ttggcttttt cctgcccttt gatgtcttta aaatcaagtt
    13501 taaaatccat attttgtaaa aaaatttcat tttctatttg taaagggttt gcaaataaag
    13561 gatgattgtg agaaaaacga aaattttcat aatttttttc tttaaaaaac tctattgctt
    13621 catttaaatt ttcaagtcca taaacctcta aatttggtat catggaagct ttttgtgcta
    13681 tactttttgg aacaacgatc ttagcttttt taattttagc agagagaaac aaaagcaaag
    13741 aaaaaagctc atttgtgctt ttaatacttc catcaagtcc taattctcct actacaaaaa
    13801 agtcatctaa ttcttcattt tgcaaaagga ttaataaagc gatagccaaa tcaaaatgcg
    13861 atcccttttt tgggatgcct gaaggactaa gattgatagt gattttttta gcaggaaaag
    13921 caaaatcaca acttaaaagt gtggctttga tgcgttcgac actttcctta atcgctgtac
    13981 ttgcaagccc tactatgctt aaatttggca aacctcttgt aaaagtggat tctacctcta
    14041 taatgtctaa gccttcatga aagcttatgc actttagttt tttcatttct cttttttatg
    14101 atttttcttc tttttcttaa attctttatc gaatttttga cgcttagcaa aggaaatttt
    14161 ttctataaat aaatgtccat ttaaatgatc attttcgtgt tgaatagcca cagctaaaaa
    14221 accttttgct tcaagttctt taaattctcc aaagcgatct tgatatttaa gcaagatatg
    14281 attatagcgt ttcacttctt caaaaaaatc tggcacactc aaacagcctt ctgtgcaagt
    14341 gatcatttct tcatctaaag gaataatttc aggattgata atctctagca aatcttcttt
    14401 tttttgttca tcgttttcat caaaaatatt tacaagtaaa acacgcaaag gaatatccac
    14461 ttgaatagct gctaaaccta ctccattact tgctatcata gtttcataca tatcatcaag
    14521 caaggtgtga agttctgtat caaatttatt tacaatttca gagtttaaaa aaagtctagg
    14581 attgggatag gtgataattt ttctaaccat taaaaaacct ttgttttaaa tgatctccaa
    14641 agaaatcatt taaaactttt ttccaaaacc ttatcaatca gcccatattc tttagcttct
    14701 tgtgctgaca tgaaaaaatc tctttctgta tcttttgcta tttttgcaac tttttgctta
    14761 gtattttttg ccaaaatatc attaagtata gttttgagtc ttaaaatttc tttggcttga
    14821 atttcaatat ctgtggcttg acctctagct ccacctaaag gttgatgaat cataatacgt
    14881 gaattaggca aagcaaaacg ttttccttct gcgccacaac taagcaaaaa tgctcccata
    14941 gaagcagctt gtcctataca aatcgtacaa acatcaggtt tgatatagtt catagtatca
    15001 taaatactaa aaccacttgt aattacacca cctggagaat tgatataaag ataaatatct
    15061 tttgtaggat cttcagcttc taaaaaaaga agttgtgcta cgatagaagc ggcaagttca
    15121 tcatgaattt caccacttag cataataatt ctatctttta aaaggcgtga ataaatgtca
    15181 taacttcttt caccacgact agatttttca ataacataag gaataaacat tatttatctt
    15241 ctttctcttt tttgctcact ttttctgatt tttctgtttt tggtataaaa atatcattaa
    15301 aaagtttttc ttcaattaaa gccattttca cagcaggcaa agctccttgt tttttatagt
    15361 tttctaaatg ctcttttgga ttcataccat agcgatatgc ttcaaaataa atcgcttgaa
    15421 tcaattcttg atcatttact tcaatcttac gcaattttgc aagttcatca atgataaaag
    15481 taagttttac acttttttgt gcttcttctt taaaagaatc acgtttttct tgatattttt
    15541 ctttacttgc tttaagctct tcaatttctt tttcgctaaa agtattaaaa gccgcacgca
    15601 tctgcatatc agtttcttgt tctactatgc ctttaggtaa atcaaaatta tatttttcaa
    15661 tcaaagcatc tgcaaatttg ccttttaatt catcatttac aagtttgaaa agtttttcat
    15721 ttttgatttg ctcttttaat ttttcatcta aaacttcaac actagctttt tcttctcctg
    15781 gtaaaagttt tttaagcatt tcatcatcaa gttctggaat tttaagctct tgaatttcat
    15841 gtagttttac tttaaatact gcatctttac ccgctaaatg cgctgcgccg tattctttag
    15901 ggaaagttac tttgatatct ttttcttcac ctattttcat tcccaccata ccatcttcaa
    15961 aacctggaat aaattgctta gaaccaattt ctaaaacata attttcagct ttaccacctt
    16021 caaaagcttt atcatctaca aaaccttcaa aatcaaattt tgcaaaatca ccttctttta
    16081 aagctctttt tgtttttata gcttcaggag tagcaaaacg ctttaaaagc tcatcttttt
    16141 tctcatcaat ttctttttta cttacttttg gagtttgata ttcagggatg agtttttcat
    16201 aaccctcaag tttgatttca ggtttaaaag aaagtattaa ttcagcaata atttctccat
    16261 ctttacgatc aaatttttca aaatatggct cacctacaag ctctttattt tcttttttaa
    16321 gttcttgtaa agcgctattt acagcggatt taaaaagatt ttgttctgca tcttgagtga
    16381 gctctctttc atatctttta agtacggcac ttacaggaac ttttcctggt ctaaacccat
    16441 ccatttttac acttttagaa gctttttttg ctaaattttc tacttcactt ttgatcattc
    16501 ctgaaggaat ttttacacta gcagtcgcat taacagaatc tagttgcttt gcctttactt
    16561 ccatagtttt ttccttataa aataaaattt gccttcaatg atagcaaatt tttccttatt
    16621 acttgcataa aattttaaag taatttatga taaaattgca atattacatt attattaaaa
    16681 tataaaaaat atttttggag aaaaatgtgc aaaaaaaatt tgaagattgt gttaaaacca
    16741 tgcttgaaat tataggagaa aatccaaatc gtgaagggct tattaaaacg ccaaatcgtg
    16801 tttttaaagc ttatgaattt cttactagtg gttatacgca aaatgtcaaa gaaattttaa
    16861 atgacgcttt atttgaaagt tctaataatg aaatggtttt agtgcgtgat atagaatttt
    16921 acagtctttg cgaacatcat cttttgcctt tttttgggcg tgctcatgta gcctatatcc
    16981 ctaataaaaa agtagtaggt ttaagcaaaa ttccacgcct tgtagaagtg tttgcaagaa
    17041 gacttcaaat tcaagaacaa cttactgaac aaatcgcaca agctttaatg gaaaatgtcg
    17101 atgcaaaagg tgtgggtgta gtcatagaag caagacatat gtgtgttgaa atgcgtggag
    17161 tgcaaaaagc taattccacc actacaactt cagctttacg tggaattttc ttaaaaaatg
    17221 aaaaaaccag agaggaattt ttttctctca taaactctgc taaacaggta agattttaat
    17281 gaatcttgaa aaactacgct ccaaacttgg caaagaaaat ttaagtgcta tttttggaga
    17341 gattacaaaa atttctgcta caagtataga aattcgtggg cttaaaacag gggttggaga
    17401 tatagtgaag ttagtttcta atgaaaatga aaatttaaac actctagcta tggttgtaga
    17461 aatcaaagaa caatttagct atttaagccc attttctttt atagaaggtt ttaaaatagg
    17521 cgatcgtgct tttataagtg atgcaggtat gcaaataggc gttagcgatg aacttttagg
    17581 cagggtagta gatcctttta tgcgtccaaa agatggtaaa ggagctatag aagcaaccaa
    17641 atatatgcct ataatgcgtg cacctattga tgcaatgaaa agagggctta tagaagaagt
    17701 ttttcccgtg ggtgttaaaa ccatagacgc gcttttaact tgtggtgtag gacaaaaact
    17761 tggtattttt gcaggaagtg gggtaggaaa atccactctt atgggaatga tagttaaaaa
    17821 ttccaaagct cctataaaag tagtggcact cataggagaa agggggcgtg aaattcctga
    17881 atttatacaa aaaaatttag gcggaaagct cgatgataca gtgattattg ttgctacaag
    17941 tgatgatagt gctttgatgc gtaaatacgg tgctttttgc gcaatgagtg tggcagaata
    18001 ctttaaagaa cagggcaaag atgtactttt tatcatggat agtgtaacgc gttttgctat
    18061 ggcacaaaga gaaattggac tagctcttgg agagcctcct acaaccaaag gttatccacc
    18121 aagtgtttta agtcttttgc ctcaactcat ggaaagaacc ggtaaagaag aaggtaaagg
    18181 cactataaca gcctttttta ccgttttagt ggatggtgat gatatgagcg atccaatcgc
    18241 cgatcaaagt cgttctatct tagatggaca cattgtttta agccgtgaat taacagactt
    18301 tggaatttat cctcctatta atatacaaaa ctctgcttca agggtgatga gtgacattat
    18361 aagtcctgaa cataaacttt gggcaagaaa atttaagcgt ttaaactcgc ttttaaaaga
    18421 aaatgaagta ttgcttcgca tcggtgctta tcagaaagga agtgataaag aacttgatga
    18481 agctatttct aaaaaagaat ttatgcaaaa attcttagga caaaatcctg aagaaagctt
    18541 cgaatttaat caaactttag agcttttaag tcaaattgat acaccaaata ctcctttgcc
    18601 accaactcaa aatataaatg taggaagtgc aagtgcaact ttgcctaatc ctaatttaaa
    18661 ataaaattat ttaataaaat aatctccatc aaaactgatt aaagaatatt tcctttcatc
    18721 gcctatgctt tgagttagct cttctatgct taaaaaactt agcgtatcag cttctacata
    18781 ttcacgcact tcttcagcat ttttatttgc actgataagt tcttcaaaag ttggagtatc
    18841 tatgccataa gtatcaggaa atttgatctc aggacaagct atggcaagat ggattttgct
    18901 cgctcctgca gcacgaagca aagaaattat ttttttagaa gtagtgccac gcaccaagct
    18961 atcatcaatg actacgattt ctttgccttc taaaacttta cgcataggat taagttttaa
    19021 ttttactttt aaatttctaa gctcttgagt tggctctata aaagttcttc ctacataatg
    19081 atttcttact attgccattt caagagggat ttgtaaatat tgcgcaaaac ctatagctgc
    19141 acttactcca ctatctggca caggcacgac aaagtctgct ttataagcaa attttttagc
    19201 taaagcttcg cccatttttt tacgcacttc atacacgctt ttgccttcta ctatactatc
    19261 aggtctagca aaataaatgt attcaaaagc gcaaattcta ggagtttgag aaaaaagttc
    19321 tatgctttca aatttatcat ttccctgagt aaaaataagc atttcccctg gtttaacatc
    19381 acgaataaat tcagcctcta taagatcaaa agcacaagtt tcactagcaa ctatatagcc
    19441 tccatctttt aaacgcccta aagacaaagg acgcacccca tgaggatctc ttacaacata
    19501 aagtttatct ttgcttgcta aaacaaaaca ataagctcct atacattctt ttaaactctc
    19561 aataaatcta tcttttagac tttcttgctt acttcttgcg ataagatgga caacattttc
    19621 tgtatccata ttggtttgaa aaatagctcc atcttgaata agtcttgatc ttacctcttc
    19681 tttattgact aaatttccat tatgcgctaa agcaatatca cctaaaaccg aagtagctgc
    19741 tatgggctga gcgtcattta aacttgaatt tcctgctgta gaatagcgat tatgccctat
    19801 agcgatttca ccttctaaag tttttagatt atcaggatta aaaatttgac tcacttcacc
    19861 tttagcttta atagtcttaa tatttttacc attactcaca ctaatgccac ttgcttcttg
    19921 cccacggtgt tgcatagcaa aaagcgcata atacgcataa gtgctagcat tttttgaatt
    19981 gataactcct acaactgcac acattttaaa ttcctaaaaa atcattgatt gaatacattt
    20041 ttgcttcttg cttgctaagc caaatagcga ttttaatcgc acctttagca aaagtcgccc
    20101 ttgaagtagc ggtatgatta agttctaaaa actcaccatc ttcgtaaaaa cctaccgtat
    20161 ggcgtcctac tatatcgcca ccccttaaac tcatcacggc aatctcatct ttacttcttt
    20221 cacctataat gccatctctt ccacttactc ttactttttc aagttctaaa tttctagctt
    20281 ttgctacact ttgagctaaa gtcatagctg taccacttgg ggcatctttt ttatggcgat
    20341 gatgcatttc taaaatttct atatcaaaat ttcttagcat ttgactggct ttactagcaa
    20401 gatagtttaa aaccgcaaca cctaaagaca tattggtcgc ataaaaaatc ggcatcactt
    20461 cactagcact ttgcatcaaa tgtaaaattt tctcatcaag ccctgttgta cctattacca
    20521 aaggtttagg catagttctt gcataattta aaagctcatg agttccactt ggggaagaaa
    20581 aatcaataat cacatcgctt ttttcaaaaa gctctcctaa atttccaccc ttatcataaa
    20641 gtatcgaaat tcgtgcttgt gtttcgcttt ttaaacattc ttcaatctgt tttcccattc
    20701 gtcctttagc gccataaatt cctattttaa tcatcttttt ccttgaaaat aaaatattga
    20761 ttttagcatt tattttgtaa attttaaata ataaaattaa gctttatggt tttttaattt
    20821 atataaatta tctaacaatt ttgcttcttc tcctaagccc ttgctatgat aaaattttaa
    20881 atttttacca agatattttt gctctaccca gccaccaaaa tcatgtggat aaagatagtt
    20941 ttgtttttct tgatgattgt tgttaagata attaggtatt tctaaagctt cattattttt
    21001 tacatagttt aaagcttcat tgatagcttt gtagcttgca ttggatttga ttgtgcttgc
    21061 taaataaact acgcattggg ctaggataat tcttgcttca ggataaccta tatttttaac
    21121 agcatctaga gtcgaaactg ctaaatttaa agcatttgga tcggcatttc cgacatcttc
    21181 acttgaaaaa atcaccaaac gcctagcgat aaaatccgca ctttctcctg catcaataag
    21241 tcttgcaaga taataaatag ctgcatcaac gtcacttccg cgtaaacttt ttatcattgc
    21301 acttgctaaa atataatgtg tatcttttga gctaacacct tcactattta tggtgttgcg
    21361 aagtttttta agattttcaa gactgatatg tttttcatct aaaaccaaga caaattcaag
    21421 caaatttagc atagctcttg catcagcact tttaagtaga aaatctttag cttctttatc
    21481 aatactaaat ttcatttttt cctgtacgcg taagagtaaa gtttcaagtt cctttgcccc
    21541 taaagattta aattcaaaaa gcatggaacg acttcttata ccagaactta aaacaaaata
    21601 gggattttca gtgcttgcac caattaaaat taaacggtaa ttttccatag gaattaaaag
    21661 catttcttgt tgggttttgc taaggcggtg aatttcatca ataaaaatta aaggcttata
    21721 aagactattt ttataattat ctaaaatttt tcttagttct tcgagtttaa aatttcctcc
    21781 atcaaattca taaaaatcta agccaaattc ttttgctaca actctagcaa aagttgtttt
    21841 tccagaacct gctgttccaa aaaaaatact atgaggaagt ttttgtaaag cagtaaattt
    21901 tttgaaaatt tctataagct catattgtcc taaaatatca tcaaaatttt cagggcgaaa
    21961 ggtcaaagct aggctcatta atttaaatcc atatttgaaa attcactacc attaattttt
    22021 agttgaggat tggccaagct atcataagat aaatttagaa aaaagttatt attttctttt
    22081 aaaaaatatt gatttaaacc tccataatcc tttgtccaag gaaaaatttc atcaggctcg
    22141 tctgaactga taacttgtaa ttttgcttga taagagttgt taatatttaa attgccttgt
    22201 aaactgatat tttgtttatt tttttcaagg attaaatttt gtatttttag atcaagattt
    22261 ttttgaataa aatgagagat attgaaattt gaattaaaaa atttgtttat ggttatatta
    22321 aattttgttt tgtcaaaatt caaattctga cccaataaag atttaagatc aatttcattg
    22381 gattttcctt gtatgtttaa gtttactgct gaattttctt cattaaaatt tacttggttt
    22441 ttgctgtaaa aagaattgat tttattgtta tctagcacaa gataatcaaa gttgatctct
    22501 tgttggctat cgctaaataa atttaactca taaaattgta caggattgtt aaaaaattgt
    22561 tcgtaattta aattttgtaa tacaaattta gtataaaatt gagaaaaatt aatcatatca
    22621 aaatgtattt tcatgttttt aatttctaaa tttttattca ttaaaacttc aatatatccg
    22681 ccgtttatga tggtatctcc gccttcattg cttaaattta tatctttaat atttagaaat
    22741 attttagagt tattatcgtg taatttgaga gtaaaagttc ctaatttatt gttttttaac
    22801 acttcatcta aaaaatcaaa aggatttgta aaatttcctt ttataatttt atttaagaaa
    22861 aaataattat taaatttaag gttgattttg gttgaaagct gtgtatgaga gtgatttaaa
    22921 gtaaaacttc ctttagaggt taaaaaacct tttttgaagt aaatatctgt aattgtataa
    22981 tcaggattgc tatttttaat aaatttatta aataaaagtt cgttagtgta tcctatataa
    23041 aatatatgaa taataaaacc taatataaaa caaaaaacaa taaaaatcca ttttttcatt
    23101 atttgcctta gatgaaaata taagtgttat tttataaatt gcttgttaaa aaagagttta
    23161 aatttttatt taagagtaat gaagtagttt gccgaagaat gatttttata aatcccttgt
    23221 taagggattt atattaataa gcttttttat aacattgaat ttcaattttt ctagctactg
    23281 gaatagcctg agtatttggt gtagcaggtg ttccataaga aattttactt tctaaaaaat
    23341 ttccaacctg taaatcttta aaagttccat ctttatctgt tccaaaaata ccacaatcat
    23401 ccatttctat ttcggtattt ggtagaactt ttatagccat ttgtccgcca taaatagagt
    23461 caataagcaa ggttttgttg ttatcataaa tttgtgcaat agtaccttca agttttagac
    23521 tatctgcaaa aagcattgag ctagctaaaa gtgctgatgc gaataaaata ctttttttca
    23581 taattatttc tccttaatgt aaagtgatga cattataaaa tttttaagtg aagtgaatgt
    23641 gaaattaaaa attttgactt tcataaatta atacgctttg attattttca aaaaaagttt
    23701 gtggaaaaag atataaacct tcattaaaag gagctttgat tagagtatat tgaagatgaa
    23761 atggggtaat ggagttaata gattgttcta aaaaagtagt gcagtaaaaa gcatctttat
    23821 ctgtacttat gataaatttt ctgcctaaat gttccaaatc tttagcaact attttttgtt
    23881 tggttttttc atcaaatttt aatcttttaa tagcaatttt atgactcagt tttaaaaaat
    23941 catccataga gcttaagata acttggtttt tagcattttt gtcatcatct gttgtagcat
    24001 gtatgagtat agttggagaa gttttaacta ccatagcgat atgagaataa gggctttgac
    24061 ttaaattttc tattaaaaaa ctttcacttc ctattcctgc acgaaagaca agatcaccta
    24121 tttcaagaaa aggtagatag ggttttttga tgatttgatt tgaaggattg gaatttataa
    24181 agaaacccaa aattccaatc aataaaaata aaattaagaa aaaatataaa attttattta
    24241 agtaaaacaa gccattttct atctttttta gcaagaaaaa cattgctgct ttgattatta
    24301 tcattgttaa ataacactaa aactctgatt ttagcagaat ctttattgat tgttttttct
    24361 tcaatttgaa tatctttaac accacccatt ctttttgctt tggctgcatt ttcagcaaca
    24421 acttgagtga ttttatcact aacaaatgtt ttttcttcat cgcttttagc ttcgctaaga
    24481 tcaatgtaac tcataacaga tttagtatca ccactgtaaa gatcttttgt aaaattttta
    24541 gctaaatctt caggatttga agaaccgtaa gccactaaaa aaaggcaact aaagccaaga
    24601 aagaaagttt aaaaaatttc atttttttct tttgatagta taaattaaaa tattcataat
    24661 tatagcaaaa taattcaaaa ttattttttt attcttgttt ataatggtta cattagaaaa
    24721 tatatttttt taaaaagcta taaatttaaa cacatataag ttggagttaa aatatcctat
    24781 tttattatcg aataaaaatg atacaaaagg ataggatatg gaaatttttt tagctttatt
    24841 gggttttttc tcgttaggat tgatagtttg gcttttgcta aaagattata ctactccagc
    24901 attagctttt ataagtgtaa gtattagtgt agcttgtatt ttacttattc ttgaacggct
    24961 tggttttggc gtgggtgtag ctttaggggt taaaggaggt gtttttgata ttaaaacatt
    25021 ggttgttttt attaaagatg gagtcaaaag cgtaacggat acggcagctt tgtttgtttt
    25081 ttctatactc ttttttagtg ttttaaatgc aagtggtttt tttactaaaa ttttaaatgc
    25141 atttttatca aaaatgaaag ctaatgtata tcaagtttgc attcttactg tttttattgc
    25201 tgctgctgtg catttagatg gttcaggtgc ttctactttt cttattgtaa tacctgcatt
    25261 attacctatt tatgagcgtt taggtataag aaagacttca atgttattga ttattacttc
    25321 ggctatgggg gttatgaatg ttattccttg gggtggtcct actttaagag cggctactaa
    25381 tataggaatg gatgcaaatt tgctttggca ccatattata cctattcaga ttgtaggttt
    25441 ggtattatcc cttcttttgg caatttggat tgctaagata gaaataaaaa gaggtgcagg
    25501 cgcaggtaac ttgtctggaa taaatttaaa tatagaaaaa agcgaacacc ataatgaaaa
    25561 atggttttgg ttaaatttac ttgtagctat tggagttatt gggcttttaa ttagcggtat
    25621 tattcctagt tatatttgct ttatgatagg acttgcaata attttaccgc ttaattatcc
    25681 taatttaaaa acagctaaaa aagttttaga tcgtgcaagt gctggtgcaa tgcttatgta
    25741 tattacttta attggtgctg ggatattaat aggcgtattt gataaaagtg gtattatgga
    25801 gaaaatgggt gttttgattt taaattttgt tccagattat ttaggcgctt atattccttt
    25861 gatggtaggg atattggctg ttccaatggc aattattttt tgtacagatt cttattttta
    25921 tggagtgatg cctatagttt tgagtgtaac taaggctttt ggcgctgaac ctttgactat
    25981 agctattatc atggtgatag caagaaattg tgcgacattt atttctcctg ttgtgcctgc
    26041 aactttgcta ggttgtggtt tagcagaggt taatattaaa gatcatatca aaagaagctt
    26101 tttttatata tggggtataa gtattatttg cttgattttt gctgaggtag ctgggataat
    26161 ataattaaaa taaaagaact tttgattttt caatgattgg ttcattgttt tatgatattt
    26221 ttgagtcaaa aatttataaa aatataagcg tttttttgta ttattttatt ttgctttaga
    26281 gaaaaattat aaatttaaac ttataagaat attttttaag ttgaaagtaa attttaaaac
    26341 ggagaaatga tgtacaaaaa acaaaattta ccagaactta ccttaagggg tttgattttg
    26401 ggaagtattt taactattat ttttacagct tcaaatgtat atttggggtt aaaagtggga
    26461 cttacttttt catcatcaat tccagctgtg gtcatctcca tggcggtttt gagtcttttt
    26521 aagacttcaa atattttaga aaataatatg gttcaaactc aagcttcagc agcaggaact
    26581 ttatcatcag ttatttttgt tatcccaggg ctttttatgt gtgggtattg gagtgaattt
    26641 ccactttggc aaacttttat gatatgtctt tgtggtggcg gacttggagt gctttttact
    26701 ataccattaa gaaggactat ggtggttgaa agcaagcttg cttatcctga aggtagagcc
    26761 gcagctgaaa ttttaaaagt agccaataaa gatcagagta gtaaaaaagg aaaacaaggc
    26821 attaaagaaa tagcattagg ctcttttata gctgctattt ttagtttgtt aagcaatggt
    26881 tttaaactcg ctgcaagtga gagtaatttt gcttttattt ggaataaaat ggcttttggt
    26941 ttttctatgg gatattcttt ggcactttta ggggcaggtt atttagttgg tttagcaggt
    27001 gctatagctc tttttgtagg tatgttttta gcttggggta tttttactcc ctatctttca
    27061 aattttgaat tcgatagtac aaaaaatgcc gtagatttag cttctagtgt atggagttct
    27121 aaagtaaggc ttataggaac aggagctatt gctatagcag cgctttggac tttaatagaa
    27181 cttttaaaac ccgttattga gggtattaaa gaaattgtta aaaatgttaa aattactaat
    27241 caagaaaaaa atgaaagaac aaatatagac ctttctttaa aaagtatttt tatacttttt
    27301 gttttaatgg ttgtgggttt atttattact ttttatagtt ttgttgaaga tgctaactta
    27361 agtatttatt atcaaatgct attttcattt gttggaactt tagtttctgt tttaataggt
    27421 ttttttgttg cagcagcttg cggatatatg gcaggacttg taggatcttc ttctagtcct
    27481 atttctggaa tcggacttat tggtgttatt atttcttcta ttgttttttt ggttttaggt
    27541 gtggaacttt ttcaagatcc tatgctttct aaatttgcag tagcattagc tatttttact
    27601 actagtgtta ttttagctac agctgctatt tcgaatgata atttacaaga tttaaagaca
    27661 ggacatttag tcggagctac tccttggaaa caacaagttg ctttacttgt aggctgtgtt
    27721 tttggtgctt tggctatagt tcctgtttta aatttgcttt atcaagccta tggttttgtc
    27781 ggagcaatgc caagagaagg tatggatgct tcatcagctt tagcagcacc gcaagcaaat
    27841 ttaatgagca ctatcgccca aggaattttt catcacaata tagagtgggg ttatatggct
    27901 tttggtgtat ttgtaggaat tttaatgatt attatagata aaattttaaa aggaacacag
    27961 aaaatgtctt tgccgccttt agccgttgga ataggtattt accttccccc tgctgtaaat
    28021 atacctttag ttataggcgg aattttaaaa tatattgtaa tgcaacactt gactaaaaaa
    28081 tatgcaaaaa attctcataa agaagaaaaa cttgcaagtt gtgagcaaag aggcacgctt
    28141 tttgcttcag ggcttatagt gggtgaaagt atttttgggg taattatcgc aggaattact
    28201 gtattttcag taagtatggg tggtagtgaa aatcctttag ctttaaattt agcaaatttt
    28261 catgatagcg agcttttcgc acttatcttt tttgtgggag ttgtattata tttcattaag
    28321 cgtattgtta aaaaagatgc ttaatttttg gggttaaaac cccatttaat ccattctgat
    28381 ataatttttc ttttgcaatt atcattcaag gattaaaatg gaaaatttat atgctttaat
    28441 acttggaatt atagaaggtc tgactgagtt tttacctatt tcttcaacag gacatatgat
    28501 tttaggtacg actattttag gtatcgatat agatgagttt tggaaaagct ttttgattat
    28561 catccagctt ggttctattt tggcggtcat ttttgtattt tggcgtaaat tgtttcaagg
    28621 gcttgatatt tggttaaaac ttgcagttgg attttttcct accggagtta tagggctttt
    28681 tgtggcaaaa tacttaaatg ctttatttaa tggttgggtt gtggttggaa tgctcatttt
    28741 tggcggtgtt gtgtttattc ttatagaact tgcacataaa aataaacaat atcgtatcaa
    28801 ttctttagaa gaaataagtt ttaaacaagc tttttgcata ggtatttttc aatctttagc
    28861 catgattcct ggtacttcaa gaagtggagc aagtattatt ggtggacttt tgctagaatt
    28921 taatagaaaa gttgcggctg agtttagttt tttgcttgcc attccaacga tgattatcgc
    28981 tacagcttat agcatttata aagagcctga gcttcttggc aatgcaaatt ctttaattcc
    29041 tttaggcata ggttttatca ctgcttttat tgttgcagtt ttagttataa aatttttctt
    29101 aaaatttatt tcta
//
LOCUS       DARBAR010000005        27927 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.005, whole genome shotgun sequence.
ACCESSION   DARBAR010000005 DARBAR010000000
VERSION     DARBAR010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27927)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27927)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27927
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.005"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..1300)
                     /locus_tag="SB815_000140"
     CDS             complement(<1..1300)
                     /locus_tag="SB815_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HEG0905920.1"
                     /translation="MQRQSPEQILKKFEVKAKEEEKNKLAKLKIFLGYAAGSGKTYAM
                     LSEARTLRDNGVDVVLGYIEPHDRPETMALAQGFESIANLEIPYKNIVLKEFDLDATL
                     KRKPALVLVDELAHTNAKGLRNEKRFQDIEELLKAGIDVYTTLNIQHLESLNDLVANI
                     SKIEVKERIPDRIFDEADQVELVDIEPNKLLKRMQDGKIYKEKQAKLALENFFRQERL
                     IALREIALRRLASRVNLRASEQRLINDDLAYHTGEHILVCINASNAKVIRAAARLALA
                     FHAKLSALYIKNPNIKEEKALEENIELAKSFDAEIISVYDDDIARQIAEYSSLSNVSK
                     IVLGKNKDKKKFKEEIFEAVAKKAPNIDLYLVNENQISTPKIRSKKGFDFLGFLKITG
                     VLLLATFIAFVFHKFNTQPSNIVMIFILAVFASSFISDNKI"
     gene            complement(1303..1911)
                     /gene="kdpC"
                     /locus_tag="SB815_000141"
     CDS             complement(1303..1911)
                     /gene="kdpC"
                     /locus_tag="SB815_000141"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HEG0905921.1"
                     /translation="MLRTLFSFFVVMLILCTLVYPFALNTVAKFIFPYQSSGSLVDKE
                     GRPTLDISKAVGSKLLDQDFNKPYFLHSRASVSNYNTSDTNESSVSSGGFNYAMSNPA
                     LKERVQKDLQKFLDENPQITKEQIPLDLLSASGSGLDPHISLQAALVQIPRISQSSKI
                     TKEELEKIIQENTESKFLGIFGEEKVNVLAVNIAIVKAMKKE"
     gene            complement(1913..3778)
                     /gene="kdpB"
                     /locus_tag="SB815_000142"
                     /pseudo
     CDS             complement(1913..3778)
                     /gene="kdpB"
                     /locus_tag="SB815_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
     gene            complement(3788..5477)
                     /gene="kdpA"
                     /locus_tag="SB815_000143"
                     /pseudo
     CDS             complement(3788..5477)
                     /gene="kdpA"
                     /locus_tag="SB815_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
     gene            complement(5487..5674)
                     /gene="kdpF"
                     /locus_tag="SB815_000144"
                     /pseudo
     CDS             complement(5487..5674)
                     /gene="kdpF"
                     /locus_tag="SB815_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
     gene            complement(5816..7240)
                     /locus_tag="SB815_000145"
     CDS             complement(5816..7240)
                     /locus_tag="SB815_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG0905922.1"
                     /translation="MDFLTSLSEAGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MFVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCIGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
     gene            complement(7362..8612)
                     /locus_tag="SB815_000146"
     CDS             complement(7362..8612)
                     /locus_tag="SB815_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEG0905923.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTNK
                     SQELAKKIIECLNEEGYFEYDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNHTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(8612..9340)
                     /gene="lptB"
                     /locus_tag="SB815_000147"
     CDS             complement(8612..9340)
                     /gene="lptB"
                     /locus_tag="SB815_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HEG0905924.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(9333..9740)
                     /gene="tsaE"
                     /locus_tag="SB815_000148"
     CDS             complement(9333..9740)
                     /gene="tsaE"
                     /locus_tag="SB815_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEG0905925.1"
                     /translation="MKEFILAKDEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSTMQKYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(9737..9982)
                     /locus_tag="SB815_000149"
     CDS             complement(9737..9982)
                     /locus_tag="SB815_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEG0905926.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLALPSTKSIPKNAQNEYVVKL"
     gene            10138..11358
                     /locus_tag="SB815_000150"
     CDS             10138..11358
                     /locus_tag="SB815_000150"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEG0905927.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADGVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGNLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMVIGRESSNDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            11371..11814
                     /locus_tag="SB815_000151"
     CDS             11371..11814
                     /locus_tag="SB815_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEG0905928.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGIHEVSVKLGHAIHAKFNINIKAE"
     gene            11814..12356
                     /gene="hslV"
                     /locus_tag="SB815_000152"
     CDS             11814..12356
                     /gene="hslV"
                     /locus_tag="SB815_000152"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEG0905929.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHTDLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            12353..13672
                     /gene="hslU"
                     /locus_tag="SB815_000153"
     CDS             12353..13672
                     /gene="hslU"
                     /locus_tag="SB815_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEG0905930.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            13669..14544
                     /gene="era"
                     /locus_tag="SB815_000154"
     CDS             13669..14544
                     /gene="era"
                     /locus_tag="SB815_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEG0905931.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIITLNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKEIYRDFILESIYENLSDELPYSSEVLIHRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            14531..15637
                     /locus_tag="SB815_000155"
     CDS             14531..15637
                     /locus_tag="SB815_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905932.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQTLYLYFYQEGKFINLKKIENFNPGNMDLFFKQNRFTELLKHYESKLLLYQDLNTIK
                     HYFSSQIKCLNLNDILDKNSLLKLSSYSIKNLDQNCNFIKHNKIKISISFKIILIFIF
                     SFSLSMMILLFKDFIEYKQNKEIQNKNFIIQEEISKLKQDKQKLLTNIQDLNFTLSNK
                     ISSTQQQFHILSTITKEINLDKNKAIILNQIISWLNSNDLKITNLEFEQTKIILSFID
                     ENHFKRALENLNSAFKILDKNEETFNIILEVIHE"
     gene            15630..16178
                     /locus_tag="SB815_000156"
     CDS             15630..16178
                     /locus_tag="SB815_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905933.1"
                     /translation="MNKIEVFLQNLNPREKFLFISFICLCALFLAFKIHDHFLEDIFQ
                     KTLVEHNYLALNEAKIENSHLKEIETKLTKQIKIEEEKLKYYKEKLHLFSYDKDFFNK
                     KINNLSKNLIINEIKFSQENKNFIHYNYVSLSLNGNFKDLLNFIQNLENLPIALKIDK
                     IKLYNTQGLKLKLDLMFKFVNL"
     gene            16304..17738
                     /locus_tag="SB815_000157"
                     /pseudo
     CDS             16304..17738
                     /locus_tag="SB815_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516966.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
     gene            17735..19525
                     /locus_tag="SB815_000158"
     CDS             17735..19525
                     /locus_tag="SB815_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEG0905934.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLKINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNATSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEELANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIKNKELIS
                     ELDIDVKASEFRAQSKYYISDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDITMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(19646..21451)
                     /gene="mrdA"
                     /locus_tag="SB815_000159"
     CDS             complement(19646..21451)
                     /gene="mrdA"
                     /locus_tag="SB815_000159"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG0905935.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTQY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLNVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK"
     gene            complement(21452..21946)
                     /locus_tag="SB815_000160"
     CDS             complement(21452..21946)
                     /locus_tag="SB815_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905936.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFVYTPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILFYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
     gene            complement(21943..22539)
                     /locus_tag="SB815_000161"
     CDS             complement(21943..22539)
                     /locus_tag="SB815_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEG0905937.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVACKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGLDSLEDIIINQTLGLDK"
     gene            complement(22536..22997)
                     /locus_tag="SB815_000162"
     CDS             complement(22536..22997)
                     /locus_tag="SB815_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HEG0905938.1"
                     /translation="MVARQIILLLACVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(22979..23494)
                     /locus_tag="SB815_000163"
     CDS             complement(22979..23494)
                     /locus_tag="SB815_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905939.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNASTIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(23485..23973)
                     /locus_tag="SB815_000164"
     CDS             complement(23485..23973)
                     /locus_tag="SB815_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HEG0905940.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIMLSKKGGKAAVAQMIEILVEKNHLEEEWNKL
                     WL"
     gene            complement(23979..24806)
                     /locus_tag="SB815_000165"
     CDS             complement(23979..24806)
                     /locus_tag="SB815_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HEG0905941.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFVGAFVVRE"
     gene            complement(24766..25884)
                     /locus_tag="SB815_000166"
     CDS             complement(24766..25884)
                     /locus_tag="SB815_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HEG0905942.1"
                     /translation="MKKILLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILAQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(25884..26699)
                     /locus_tag="SB815_000167"
     CDS             complement(25884..26699)
                     /locus_tag="SB815_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEG0905943.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEEGFYFGIGGVLTFKNAKKLVEILPKIPKDKLLLETD
                     APYLTPEPYRGKRNEPLLTQFVVNKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(26690..27898)
                     /gene="cbrR"
                     /locus_tag="SB815_000168"
     CDS             complement(26690..27898)
                     /gene="cbrR"
                     /locus_tag="SB815_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HEG0905944.1"
                     /translation="MLGKLLAKKIQMTLDYEVDIAFGFAEAKELMNNDYFLAFVDLCL
                     PDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKESETCIDEIISSI
                     VKLNQYAKTKVIVAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMSYLNDNNDVKLII
                     ADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNGVNEYLFKPLSKE
                     SFNCRLDRCLSYMDDKKFLSTYNVLDLVSGVKNYNALIDGIDDYFNEIATKDEEFAFA
                     FLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAEKICILLKNISQE
                     RAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLVDKASKILSQAKD
                     NGKDRVEVCS"
BASE COUNT        10178 a         4782 c         3705 g         9262 t
ORIGIN      
        1 aaattttatt atcagaaata aaagaagaag caaaaactgc taaaataaaa atcataacta
       61 tattacttgg ctgagtatta aatttatgaa atacaaaagc tataaaagtt gctaaaagca
      121 aaactcctgt gatttttaaa aaacctaaaa aatcaaaacc ttttttactt cgtattttag
      181 gagtagaaat ttgattttca ttaacaagat ataaatcaat attaggtgct tttttagcaa
      241 cagcttcaaa aatctcttct ttaaactttt ttttatcttt atttttacct aaaacaattt
      301 tagaaacatt gctaaggctt gaatactctg caatttgtct tgctatatca tcatcatata
      361 cgctaatgat ttcagcatca aaacttttag ctagttctat attttcttct aaggcttttt
      421 cttctttaat attgggattt tttatataaa gcgcactcaa tttagcatga aaagctaaag
      481 caagtcttgc agctgcacga ataacctttg catttgaagc attaatacaa actaaaatat
      541 gctctccagt atgataagct aaatcatcat taataagcct ttgttcactt gctcttaaat
      601 tcactcttga agcaagtctt cttaaggcaa tctcacgcaa agctataagt ctttcttgac
      661 gaaagaaatt ttcaagtgct agtttagctt gtttttcctt ataaatttta ccatcttgca
      721 ttctttttaa aagcttatta ggttcaatat caacaagttc aacctgatca gcctcatcaa
      781 aaatacgatc aggaatacgc tctttaactt ctatcttact gatattagcg actaaatcat
      841 ttaaactttc taaatgttgt atatttaaag tagtataaac atcaatccct gcttttagaa
      901 gttcttctat atcttgaaaa cgcttttcat tacgcaagcc tttagcatta gtgtgtgcaa
      961 gctcatctac taaaaccaaa gcaggctttc tcttaagggt agcgtctaaa tcaaattctt
     1021 ttaatactat atttttataa ggaatttcaa gattagctat actttcaaaa ccttgtgcta
     1081 aagccattgt ttcaggtcta tcgtgaggct ctatatagcc taaaacaaca tcaactccat
     1141 tatcccttaa agttctggct tcacttaaca tagcataagt ttttccagaa cctgcagcat
     1201 aacctaagaa gatttttaat tttgcaagtt tgtttttttc ttcttccttg gctttaacct
     1261 caaatttttt aagaatttgt tcaggacttt gtctttgcat gtttattctt ttttcatggc
     1321 tttaacaata gctatattaa cggctaaaac attaaccttt tcttccccaa aaatccctaa
     1381 aaatttagac tctgtatttt cttgaatgat tttttctaat tcttctttgg tgatttttga
     1441 agattgactt atcctaggaa tttgcactag ggctgcttga agactgatat gaggatcaag
     1501 acctgatcct gaagcgctta acaaatccaa aggaatttgt tcttttgtaa tttgcggatt
     1561 ttcatctaaa aatttttgca aatctttttg cacacgctct tttaaagcag gatttgacat
     1621 agcataatta aatccacctg aacttacact gctttcattt gtatcacttg tattgtaatt
     1681 tgatacagat gctcttgaat gtagaaaata aggcttatta aaatcttgat ccaaaagctt
     1741 tgaacctacc gctttgctta tatccaaagt cggacgacct tctttatcca ctaaacttcc
     1801 acttgattga taaggaaaaa taaattttgc aactgtattt aaagcaaaag gataaacaag
     1861 agtacacaat attagcatta ccacaaaaaa actaaacaaa gttctaagca tatcacactc
     1921 ctaaaattct aagtatccaa gctgtaggaa tatcaattat ttttatccct ataaaaggtg
     1981 ctatcatacc acctaaacca taaatactca aatttcttaa aagcaaatgc tcacttttca
     2041 taggcttaaa tttaactcca cgcatagcaa taggtatgag caaaggtata ataatagcat
     2101 taaaaataag tgctgataaa atagcgcttt gcggggtagc caaatgcata atatttaaaa
     2161 tttgcatttg aggtaaaacc acactaaaca tagcaggtaa aatagcaaaa tacttagcaa
     2221 tatcatttgc catactaaaa gttgtaagac tacccctagt aataagcaaa ccttttccta
     2281 tttcaactac ttctaaaatt ttagtaggat tagaatcaag atctatcata ttggctgctt
     2341 ctttggctat agtagctgct gttaaaggat tatctccggt acacattaaa gtttttatgc
     2401 ccatttttct aagctcatca aaacgctctt taagtcctgg ttttactgta tcctttagat
     2461 aaatcactcc taaaattttt tcatttttac acactaccaa aggagtgcca ccaagatttg
     2521 aaatttccat taccttagtt tctaaatcgc taggaatttt tccattcatt tcgcttatat
     2581 aagctcttat agcatcaaaa gcacctttgc gaatttttgt attatcttgt aaatccacac
     2641 cactcattct attttgagcg ctaaattcga taaattcttt aatatcatta ccttttaatt
     2701 cataacccat tttttgagcc aatgcaatta tgcttttacc ttctggagtt tcatctttta
     2761 aagaggataa aacacaagct ttaatcattt cttctttact tataccttgg acttcataaa
     2821 attcatttgc caaacggttt ccaaaagtaa tcgttcctgt tttatccaaa atcatagtat
     2881 caacatcacc acaactttca acagccttgc ctgaaagtgc gatcacatta aaacgcgtta
     2941 ccctgtccat acctgctatt cctatagctg ataaaaagcc ccctatagtt gtaggaataa
     3001 gacatacaag caatgctact aaccactaaa taggcaaact cacgcctaaa aattgcataa
     3061 aaggatataa acttacaacc accaccaaaa aactcaaact aagcacaatt aaaagagtat
     3121 taagagcaat ttcatttgga gttttttgac gcacagcacc ttctacaaga ttgatcattt
     3181 tatctaaaaa actttcccca gctccaacta aaattttaat ctttaaaaaa tcagttaaaa
     3241 ccgtagtccc gcctgtaaca gaagaaaaat caccgcccga ttcacgcata acaggtgcac
     3301 tttcacctgt aatagctgat tcatcaacac ttgcagcacc ttctagaatt tctccatcat
     3361 taggtataag ttcacctgct ttaactaaaa ctatatcacc tatttttaac tcgctagaat
     3421 taagcatttc ttcactgcca tcacttttta tgcgtctagc tttagaatcc tttttgcttt
     3481 gtcttaaggt agctgcttgg gctttacccc ttccttctgc aatactttct gcaaaatttg
     3541 caaaaagcaa ggttacaaat aaaataaaag tgattaagat gttataaatt ctttcatcag
     3601 aatttccatt aaacaaagta ggaaaaatac ttaaaattaa agtaagaatc aatccaactt
     3661 ccaccataaa cataacagga ttttttacca taaagcgtgg atcaaatttt aaaaatgctc
     3721 cttttatggc attatttaaa atttcttttg taatgagttt attttgtttt ttagacattg
     3781 actctcctta atgccataaa gataaatatt ctgcaacgct tgataaagta agcactggaa
     3841 aaaaagtaag tgcagcaaaa atatatataa tacaaacaag cacaaacata aaagttaaat
     3901 tatccgtttt taaagaattt gcagtatttt cttgtgtatt tttagccaaa agcgatccag
     3961 ctatagcaag ctgagctatt aaaaccaaat aacgcccaca aaacatagca aaagctgtac
     4021 ttaaattcca aaataaatta tcatctttta aaccttcaag tcctgaacca ttatttgctg
     4081 ccgaagaact aaattcatac aaaatctgag ccaagccatg aaagctagga ttgcttatac
     4141 tatcttttgc aaaaacaaca gctaatgcac ttaaaacaag gattaataaa ggatggataa
     4201 gaattaccaa agctataagc ttcatttgtg cgctttctat ttttttaccc aagaattctg
     4261 gagttctgcc tatcattaat gcacaaataa acacggttaa aagcacataa atatcatatt
     4321 cataagccct actccttctc caccgaaagc tacatttaac atcatattta gcaaagtagc
     4381 actgatgctt aaaggattta aactatcgtg catattattg acgcttcctg tagtaaaagc
     4441 agtagttaca gcactaaata aactcgaacc atctatacca aatcttattt ctttaccttc
     4501 taaatttccc aaatttgcat ttaaacccaa agaatccaaa tttggatttg acattttttc
     4561 gctaaaataa attaaaagca aagaaatgat aaaaataatt cccattgcac caaaaataac
     4621 tccccttctt ttcccataag agcaaaacct tgtctttctt ttctatgata aaccatcaat
     4681 ccaaaagcta caacacaggt tactaggaat aagcatcatg gataaaattt gcaaaaaatt
     4741 tgtaagtaaa gcaggatttt caaaaggcat gcttgaatta gcaccaaaaa accaccccca
     4801 tttgtcccta aatgttttat agactcaaga gctgcaacag gacctgtggc aatgctttga
     4861 aatttatttt ctaaagtaag cacgctaaaa tttgcgtgat agttttgcac cacgccttca
     4921 gagataaaaa ttacagccaa aataaaactt aaaggcaaca tcaaacgcgt aataatacgc
     4981 gtaaaatctt cataaaaatt tcccatttgc ataccacata aagcacgaca aaaagccata
     5041 caagcagaat atccacttgc acttgaaaca aacatagcaa gtaaaatgcc tgtattttgg
     5101 gaaagcaaac ttaaagcact ctctccacta taatgctgaa ggtttgtatt tgtaataaaa
     5161 ctaattacag tatttaaatt caaatcccct ttcatagaat ttatcgaatt gggatttaaa
     5221 aaaagtttat cttgcaaata aaaaatcacg aaagaaaaaa tagccactaa ggcattaaaa
     5281 gcaattaaat gcaaagaata tttttgccaa gtcatatttt ttctatcaat tgcacaaatt
     5341 ttataaatta agttatcaat tggattaaaa ataaaatcaa aaatagtttt gttacagctt
     5401 gcaattttat aaagataatt tccaaaaatt aaagccaata taaaagctat aatcagtgtt
     5461 attaaaattt ctagcatatt tttcctttaa aatttttcag gatataatag agcataaaat
     5521 aaataaagag caagtattaa gcttaaaact agtaaaaata tcatccgcgt gtcctagttt
     5581 gaatttcaca aaaacggata aaaaaccata aactaccaaa agctaaaagc agaagcaaag
     5641 caaagataac atccatagga tagccctttc tcattgattc aaaataggat ttattctatc
     5701 cttgttaagc ttatattttg attaatacta attttatgat ttatttataa tttttatcta
     5761 tattaaataa aaagacaaat gaagaattta gcaggaaaaa tcctgctaaa aattgttaaa
     5821 gataacctgc tgccatagcg ataaaatatc ctgctataca agaagtgatt acacctataa
     5881 gacctggtaa aataaaacta tgattgataa caaatttacc gatgtgagta gtacctgatc
     5941 tgtcaaattg tatagtagct aaatcgcttg gataagttgg taaaatataa tatccataac
     6001 aagcagccgc aaaagcaaca attacaccag gttcaacacc aattcctaaa gccaaaggaa
     6061 caaaagccga aatagccgct gcttgagagt ttacaaattt tgaaattaaa agaagcatta
     6121 cagcataagt ccaaggatgc tcttttacta tatctccaag cgctgctttc atcataggag
     6181 tatgaactgc aaacatagta tcagccatcc aagaaattcc aaataccgca acaagtgcta
     6241 tcatacctga tttaaaaatt tcattagagc cgattttctt tgcatctgtt ttagtaaaga
     6301 tgataatcaa agaacctgct aaaagcataa acatctgaat aactgaaacc atggataaaa
     6361 catccatttt aggattgcct aaagcatcta cttgaggaat gccatttttt acaacttgcc
     6421 cccagtttgg acgcaagaaa tcaaatacac ctaataaagc cactaaagca atagctccta
     6481 agaaaatcca cattgcaacc caattacttt ttgggagttt aacacctaaa agtgttttag
     6541 aatccccata aacatatttt ttaaattcag gatctttaag tttttcttga aatacttcat
     6601 ctttatccaa atcttttcct ctaaaccaag aaaaaattcc tatacacaat acaccaaata
     6661 atgtactagg tatggtaatt tgaagaagat taatataacc atcaaaacct gctaatttat
     6721 gattagcatt taaaagcaaa gcagtcaaac tcacaacagc cacagataca ggagatgcaa
     6781 taatacccat ttgtgatgat atagaagctg ccgccattgg acgctcagga cgaataccat
     6841 ttttaatcgc tatatcataa ataataggca taatagtata aaccacatgt cctgttccac
     6901 aaagtatggt caaaaagcag gttacaaaag gcgctagtat tgttaaaaac ttaggattgc
     6961 gtcttaaaat tctttctgct atttgaagca taacatccaa accaccactt gcttgcaaag
     7021 ttgcactcgc aaccactacc gctaaaattg taagcataac atctatggct ggttttccag
     7081 gctttatatg aaaagcaaat acaaacatta aaatacctat accaccaagt aaaccaagtg
     7141 ctatgccgcc tttttttgca ccgtaaaaaa gacaaattaa aacgataatg atttggattg
     7201 caaattgccc tgcctcacta aggcttgtta aaaagtccat tttaactcct ttgaaaattg
     7261 atatataaaa acagttatta ttgtatcaca tttttaaatt aaagaataat atttctaaaa
     7321 ataaaacaaa agtgtaatgg gtttgataga ttgatagaat tttatccttc aagttcatat
     7381 aatttttttc tatctgtaga gcttgctata ttaagatgtt tgcgatattt tgtaatagtt
     7441 cttcgcccta tatcgacttt aaattcttct ttgattaatt ctaaaatttt actatcactt
     7501 aaaggtttat ttcgatcttc attctttacc aaatttgcta caaattcttt aacacctaca
     7561 tttgaagtct ctccctcttc atcaagagca aaagcaaaaa aatcacgcaa ggggataagt
     7621 cctctttcac aacttaaata tttatttgcc acagctcttg atatagtcga agcattgcgt
     7681 tctaaatcaa gtgctaaatc cttaaaagtc ataggtttta tctcttttcc catgaaaaaa
     7741 tcatattgat attctactat cataagccct attttataaa gagtagcttt tctcatcgct
     7801 aaagcatcaa ctaaattttt tgcttctttg atgtaatgac ttaaaaaatc atgctctaaa
     7861 ccatcagttt ggattgaaat ttcaggataa taatcatcat tgatttttac tttaatttca
     7921 ccattttctt tataaacaaa aatatcagga acaattatac gagaatcttc aaaatattcc
     7981 aaaaaaggag gagtgctaaa acgcttaagt acagctaatg cttctttata taaaggctct
     8041 ttggtatggt tttgtatatt ttcaaaatcc ataatcaaca ttctacaaaa ctcatcaata
     8101 tcttcatcta attccatatt ttcaagagca aataaaaatg cttctttata atctttagct
     8161 cccactccta caggatctaa aaatttaaat cttgctctta ctcgctcaat ttcttccaaa
     8221 gaatactctt ttaaaaattc ttcatcgtat tcaaaatatc cttcctcatt taagcattct
     8281 ataatttttt ttgcaagttc ttgagatttg tttgtaggaa acaaaggagg aagaatctgt
     8341 tcatttaaaa gctcataaac actttttttg gcaagtcctt tactatccac aaaagccgaa
     8401 tttacattat gtttataaaa tgaatcaaaa taattcttac ccttatcatg agtttgtatc
     8461 gaatcttgaa catttaagaa aggattatcc tcagcaaatt tatctaaatt ttcttttaaa
     8521 tcctctatat ttgcttgtaa aatcggcaac caagagcgta aagtttgaga aattttagtc
     8581 ttgggtgctt gggtgatttt ttgctttaac atcaatcaag gagtttaaac tccgctccta
     8641 aataatactt tttcacatct ttattggttg caatttcatc agcattccca ctagcaagta
     8701 aagaacctga tcttataaca taagctctat cacaaatagc caaagtctca cgcacattat
     8761 gatcggtaat taaaacccca atccccaatc ttttaagctc tttaattaaa gtttgaattt
     8821 cagccactgc tataggatca acacctgcaa aaggctcatc aagaagcaaa aacttaggtt
     8881 cacacatcaa gcttctagcg atctcacaac gccttctttc acctccactt aaacttaaac
     8941 ctttccttaa acgaataggc tctatactta agagttcaag catttgctca actttatcat
     9001 gtaaaatttt tttatcttta taaaaaatct gagccgctaa aagcaggtta tcttctacac
     9061 ttaaatcctt aaaaatacta ctttcttgag gtaaataacc tatccctgat ctagctcttt
     9121 tgtttaaagg atcttttgtc acatctaaac cgtctaaaag aacttttcca ctacttgggg
     9181 aaataagtcc acatatcata taaaaagttg tcgtttttcc tgcaccattt ggccctaaaa
     9241 gtcctacaac ttctccgcta ttaacctcta aagaaattcc atgtataatc ttagtttttt
     9301 taataatttt ttctaaattt acaatttcta atttactcat aaatttcata ctttcttttg
     9361 tcatctttaa tgctaatttt aatctggata gtagaaattc caaatttcat taaagttttt
     9421 ttcaaatttt caccacccca ttcaaccaaa tgtaaacctt tttcaaaaaa attttcaaat
     9481 aaaccatttg ctaaaagtcc ttctaaacct tcttgataaa tatcataatg ataaatgcaa
     9541 atatcatgat tttcatattt ttgcatagtg gaaaaagttg gagaatccac ccttgcatca
     9601 agaccaagaa atttaaccca agcttgtact aagcttgttt ttccgctagc caaatctcct
     9661 tgaagcaaaa caacaccttc tttaggcatt atttgaagca tcgttttgat ctcatctttt
     9721 gctaaaataa attctttcat aattttacca catattcatt ttgtgcgttt ttaggaatgc
     9781 ttttcgtact aggtagagct agcactttat atttttgagt gtattcagta aaatgtaaag
     9841 tgataatatc acctacctta acctctttac tcgccttaac aataacacca ttaatcccca
     9901 ctacaccact tttacacata tcttcagaaa tagctcttct tttcgtgata ttaactacat
     9961 ttaaaaattt atctactctc ataaaagcaa ttttagcaaa aaaaatcaat ttttggaaca
    10021 aaatttgctt acgcctttgc tttatttttt taagaaaata gcaagtaaaa acttttcttt
    10081 aatgaaattt ggatacaatt ttataatttt caaatctatt ttaacaaagg atatcttatg
    10141 aaaaatgaag taaaaaaagt agttttagcg tattctggag ggcttgatac gagcattatt
    10201 ttaaaatggc ttcaagatga atataattgt gaagttgtaa cttttacagc agatattggt
    10261 caaggtgaag aactcgaacc tgcaagaaaa aaagcccttt ctttaggcat aaaagaagaa
    10321 aatattttca ttaaagattt aagagatgaa tttgttaaag attatgtatt tcctatgttt
    10381 agagccaatg cgatttatga aggagaatat cttttaggaa caagtatagc aagaccactt
    10441 atagcaaaaa ctcaagcaca aatcgccctg caaacaggtg ctgatggagt aagtcatggt
    10501 gccacaggta aaggaaatga tcaagtgcgt tttgaacttg gttatcttgc ttttaatccc
    10561 gatttaaaaa tcatcgctcc atggcgtgag tgggatttaa acagtcgtga aaaactcctt
    10621 gcttatgcac aaaaacacgg tattgatatt tctaagaaaa aaggaaaatc tccttattct
    10681 atggacgcaa atttacttca tatttcttac gaaggacttg tcttagaaga tcctgcacac
    10741 gcacctgaag aagatatgtg gagatggagt aaaagcccaa aagatgctcc aaatgaaagt
    10801 gaaattatag aacttgattt ccaaaaagga aatttagtag cgataaatgg agaaaaacta
    10861 agtcctgcag gacttttaac caaacttaac gaactaggct gcaaacacgg tataggacgc
    10921 cttgatatag tagaaaatcg ctatgtaggt atgaaaagcc gtggttgtta cgaaactcca
    10981 ggcggtacca tacttttaaa agcacacagg gcacttgaaa gcatcacgct tgatagagaa
    11041 gcagcacact taaaagatga actcatgcca aaatacgcaa gtttaattta caatggctat
    11101 tggttctcgc ctgaaagaat gatgcttcaa gccttaatcg atgagtctca aattcacgcc
    11161 aatggcagag taaaactcga gctttataaa ggcaatgtga tggttatagg acgagaaagt
    11221 tcgaacgata gcttgtttaa cgcagcttat tgtacttttg aagaagatga agtgtataat
    11281 caaaaagacg cagcaggctt tatcaagctt aatgctttgc gttttatcat cgcaggaaaa
    11341 aatggaagaa aattttaata aaggaataaa atgaaagtat tattaatcaa agatgtaaaa
    11401 gcacttggaa aagcaggaga aataaaagaa gtaaaagacg gctatggaca aaatttctta
    11461 atcgctaaag gctttgctaa agcagctact aatgaagttt taagaaaata tgaaagcgac
    11521 aagaaaaaag aggctgaaaa tttacgcttt gaaatcgcaa atttagaaaa actcaaagaa
    11581 gaacttagca aaatcactct tgaaatttca aaacccgtag gtgcaaatgg aagtttgttt
    11641 ggtggcgtaa ccaaagatga aatcgctcac gccctaaaag aacaaagcca tatagaaatc
    11701 gataaaaaaa gtttagaatg tgatacctta aaaagcttag gaatccacga agtaagcgta
    11761 aaacttggac acgcaatcca tgctaaattt aacataaata taaaggcaga ataatgtttc
    11821 acgcaacaac gattttagct tacaaaggta aaaataaatc cgtaattggc ggagatggac
    11881 aagtaagctt tggaaatacg gtgctaaaag gcaatgctgt aaagattaga aaactcaaca
    11941 atggcaaagt tttagcaggt tttgcaggat caacagctga tgcttttaat ctttttgata
    12001 tgtttgaaaa tctccttcaa agttctaaag gcgatctttt aaaagcagca attgactttt
    12061 ctaaagaatg gagaaaagac aaatacctaa gaaaacttga agccatgatg ctcgtacttg
    12121 atagaaatca catttttcta ctttctggta caggcgatgt ggtcgaacct gaagatggac
    12181 aaatcgcagc cataggaagt ggtggaaact atgcgctttc agctgctaga gccttagcaa
    12241 aacataccga tttagatgaa gaagaacttg taaaatcaag tcttcaaatc gcaggtgaaa
    12301 tttgcattta taccaatacc aatatcaaaa cttatgtaat tgaggatgag aaatgaatct
    12361 aactccaaaa gaaatcgtta aatttttaga tgattatgtt ataggacaaa aaaaagctaa
    12421 aaaaatcata gctatagctt taagaaatcg ctaccgcaga atgcaactta gccctgagtt
    12481 gcaagatgat atagtgccaa aaaatatctt gatgataggt tctacaggtg taggaaaaac
    12541 agaaatcgct aggcgtttag ctaaaatgat gggttttcct ttcatcaaaa tcgaagcaag
    12601 taaatatact gaagtaggtt ttgtaggtcg tgatgtagaa agcatggtaa gagatcttgc
    12661 caatgcggct ttaaatttgg taaaaaatga gcaaagagaa aaaaacaaag ataaaatcga
    12721 tgaatttata gaaaataaaa ttttagaaaa acttttacca cctttaccaa agggtatcag
    12781 cgatgaaaaa caagaagaat ataaaaacag tcttgaaaaa atgagaacta aactaagaaa
    12841 tggcgatctt gatgaaagca ccatagagat agaaatttca caaaatatgt ttgataccaa
    12901 tcccaaccta cctcctgaaa tgggtgcaat gcaagatata gttaaggtta taggcgttgg
    12961 cagtaaaaaa gtcaaaaaag aaatgaaaat caaagacgct aaaaatgctt taaaaaatga
    13021 agcaggagaa aaaatcctcg accaagaaag catcaaaagc gaagccttaa aaagagcgga
    13081 aaatgaaggt attattttta ttgatgaaat cgataaaatc gctgtttcaa gcggaaattc
    13141 aaaccgccaa gatccaagta aagaaggggt gcaaagagac ttacttccta tagtcgaggg
    13201 atcaaatgta caaacaaaaa taggtacttt aaaaaccgat catattcttt ttatcgctgc
    13261 aggggctttt catcttagca aaccaagtga tcttatccct gaactgcaag gacgctttcc
    13321 tttaagagtg gaattagata gtcttgatga taaagctctt tatgaaattt taacacgccc
    13381 taaaaattca cttttaaaac aatactctca gcttttaaaa actgaaaatt tagaacttga
    13441 atttgatgat gaagccatta aagaaatagc aaaaatagct tcaagagcca atgaagaaat
    13501 gcaagatata ggtgctagac gcttacatac tgtgatagaa aaattacttg aagatctaag
    13561 ttttgaagct gatgagtatg cgggtaaaaa attcgtagtg gataaaaaaa tggtagaaga
    13621 aaaactcgga gatatcatag aaaataaaga tcttgcaagg tatattttgt gaaaagtggc
    13681 tttgttagta tcatagggcg tactaatgca ggaaaaagta ctttaatcaa ttccttacta
    13741 gaagaaaaaa tcgccctagt ttctcacaaa caaaacgcca caaggcgtaa aatcaaagcc
    13801 atagtgatgc atgaaaaaaa tcaaatcatt ttcatcgata ccccaggact tcacgaaagc
    13861 ggtgctacgc ttaatcaact gcttgtccaa agtgctatta aatccatggg ggattgtgat
    13921 gtgattttat ttgtggcgag tgtttttgat agtacaaaag actatgaaaa ttttcttagt
    13981 ctaaacccac aagtaccaca tatcatcact ttaaataaag tagatttaac cgacaatgct
    14041 acacttttaa aaaaacttag cgaatatgca aaatttagcc aacattttaa ggctatcatt
    14101 ccttattctt ctaagaaaaa aagctataaa aaaggcttgt tagatgagat agtaaaatat
    14161 cttgacgaac atgaatattt ttatgatcct gaatttttaa gtgcgagtag cgaaaaagaa
    14221 atttatagag atttcatact tgaaagtatt tatgaaaatt taagcgatga gcttccttat
    14281 agtagcgaag tgcttatcca tcgcaccaaa gacacaccta atcttttaat cctagaagcc
    14341 aatatcatca cagatacaaa ctctcacaag ggtatgctta taggaaaaga aggggcaact
    14401 ttaaaaagaa taggcaaaga tgcacgcttt aaaatttcaa aacttgccca aaaaaaggta
    14461 cttttaaagc tttttgtaac agtgaaaaaa aactggcaaa aagatgaaga atttttaaaa
    14521 aaacttctaa atgatgaaaa ttaattcatt aaataaaata aattttataa aatctacaga
    14581 tttactttat gctcaaagaa cgggaatatc caaagaagac gaacttttta acaatttaac
    14641 tgcagatttt aagctaagca aaccctttga ctatcaaata gcttttttta aacataatga
    14701 aatttatcat tgttttttag cgcctgttta caaattgaaa aaaagtcgtt tttgctttcc
    14761 tgagccttta atttttcaag ctttgtttga tgaaagattt attgaggaaa gtgattattg
    14821 tgttttaaat ttatatgatc aaactttata tttatatttt taccaagaag gaaaatttat
    14881 caatcttaaa aaaatcgaaa atttcaatcc aggtaatatg gatttatttt ttaaacaaaa
    14941 tcgatttaca gaacttttaa aacactatga aagcaaattg ctactttatc aggatttgaa
    15001 tacaatcaaa cattacttct catctcaaat aaaatgttta aatctaaatg atattcttga
    15061 taaaaatagt ttattgaaat taagttcata tagtataaaa aatctagatc aaaattgtaa
    15121 ttttatcaag cataataaaa taaaaatatc tatttctttt aaaattatat taatatttat
    15181 ttttagcttt agtcttagca tgatgatttt attatttaaa gattttatag agtacaaaca
    15241 aaataaggaa attcaaaata aaaattttat catacaagaa gaaatttcta aactaaaaca
    15301 agataagcaa aaattattaa caaacataca agatttaaac tttactcttt ccaataaaat
    15361 atcatctaca caacaacaat ttcatatttt atccaccata acaaaagaaa tcaatttaga
    15421 caaaaataag gcaatcattc taaatcaaat catatcatgg cttaactcca atgaccttaa
    15481 aatcacaaat cttgaatttg aacaaacaaa aatcattctt tcttttatcg atgaaaacca
    15541 ctttaaaaga gcattagaaa atctaaattc tgcttttaaa attcttgata aaaatgaaga
    15601 aacatttaat atcatattag aagtcataca tgaataaaat agaagtattt ttgcagaatt
    15661 taaatcctag ggaaaaattt ctttttattt cttttatctg tctttgtgct ttgtttttag
    15721 cttttaaaat tcacgatcac tttttggaag atatttttca aaaaacatta gtagaacata
    15781 attaccttgc attaaatgaa gcaaaaatag aaaattcaca tcttaaagaa atagagacaa
    15841 agctaacaaa acagataaaa atagaggaag aaaaattaaa atactataaa gaaaaattgc
    15901 atttattttc ttatgataaa gattttttca ataaaaaaat caataattta tccaaaaatt
    15961 taatcattaa tgaaataaaa ttttcccaag aaaacaaaaa ttttattcac tataattatg
    16021 tttctctaag tttaaatggc aactttaaag acttactcaa ttttatacaa aatttagaaa
    16081 atcttcctat agctttaaaa attgataaaa taaaactata caatacacag ggtttaaaat
    16141 taaagcttga tttaatgttt aaatttgtta atttataata atattaaaat attatatttt
    16201 taaatattat tataaaaaaa tatttaaaaa tattgtaatt taattatttt tctattacta
    16261 ttagttaaaa tattttaaac ataaaaaaga aaggtattgg gaagtgacta aacaagaaat
    16321 acaaaaactc gatacaaatt tcctaggtca tcgcaagcct ttattctctc tatcaatggt
    16381 agaactttgg gaaagatttg cttttatggt atttttcagg agcttgtatt tagcagcacg
    16441 cttcctggag gctggattac tgataattat tcagggcaaa aaaggcttta tttctaggtt
    16501 cttttattat aactttagga catattagca tagccttatc tattttaagc acacctatgt
    16561 ttttcctagg gcttactttt atcgttattg gtactggatt ttttaaaact aacgcttctg
    16621 taacagttgg aatattatat aaacaaaatg atacaagatg cgatactggc tatacgattt
    16681 tttatatagg aattaacatt ggagcattca ttgctcctct tatatgtggt tttgttcaag
    16741 caaaatggaa ttatcattta ggatttggct aggaggttta ggtatgctaa tctctttgct
    16801 tattttatat tttaaagctg cccttgagct tgaagaattt cataaaaatt gtaccttaaa
    16861 gcaaaactgg gaacaaccat ttaaaaaagt aaaaaattta actcttatac taagtataag
    16921 cttgttaagt attattggat tttttctaat gtttattaat cttgtaaata ttaatcccat
    16981 ataatactat caaaaaaact tctaattgta attttactat gcttggtaat ttatttcata
    17041 tatctttttg tttttaaagc cttaaataaa agagagaaac aacaattaat aattttaatt
    17101 gttttattct ttgcagccac tttttttgga gtacttttaa acaaaaaccc taccgcttat
    17161 aatctttttg cgcaagattt tacaaataga aatatttttg attggaaaat tccaacaaac
    17221 tggtttcaat cttttaatcc aatttttatc atcatacttg ctcctatagc aagttatatt
    17281 tggatatttt tagagaaaaa aatatatatt tttcttccat tggaaaattt actttaggaa
    17341 tattatttgc cggtattggt tttatgatga tgacctttgc ttcacaaaat ctaataaaca
    17401 acaatggttt accaatatcc atggcttgga ttatcataag tatattcttt ttaacacttg
    17461 gggaactatg cgtgtctcct attggactct ctataatgac taaggtcgcc cctgatttaa
    17521 tcaaaaatca agtcatggga ctttggtttg tagcaagtgc attaggcaat gctttagctg
    17581 gattcatagg tggtaaagca agtgaagaaa atatagctta tttgccaaat ttattttacc
    17641 aatgtatgtg gatattactt ggtgctgtta taattttact tatactcaaa aaacctatca
    17701 ataaaatact aaaaattaat attaaggaga aaatatgagt atttacaaac aaagagtatt
    17761 agaacttaga agattaatga aagaaaataa tattgacgcc tatctcatct taagcgcgga
    17821 tccgcatttg agcgaatatt taccagaata ttacaaaaac agagtcttta tcagtggctt
    17881 taagggttct gttggaacag ttcttatcac acaagaagag ggctttttgt gggtagatgg
    17941 aagatattgg cttcaagcac aaaaggaatt agaaggtagt ggcatacttt tacaaaagca
    18001 agatgctaaa aatactttta ccaaatggtt ggaaaaaaat ttaagcgaag atcaaatttt
    18061 aggcatcgat tttgcacttt tacctttatc tttgcaaaaa gatttaaaga ttaattgcaa
    18121 ggcaaattta aaacatatag atttgataag tccactttgg aaagatcgtc ccactttacc
    18181 acaagaaaaa atttatgaac acgaactaga atactgctct tactcaagaa aagaaaaatt
    18241 agcattagtg cgtcaaaaaa tgaaaaattt aaatgctacc tctcatttaa tctccagcct
    18301 tgatgatata gcttggctta caaatttaag agggaatgat gtaaattata atcctgtatt
    18361 tttaagtcat ttgctaatct tggaagacaa agccttgctt tttgttgatc agaaaaaagt
    18421 aaattcagaa cttgaaaaaa aattaaattt agatgggttt tggcttaaaa attatgatga
    18481 aatcatcatg gagcttgaag aacttgcaaa tacaaatttg cttattgaac cttcaaaaat
    18541 gaccgcttta ctcataaatt ctttagataa aagcgtaaaa atcattcaag aaattaatcc
    18601 aagcactcac ttaaaagcag ctaaaaatac aaaagaaata gcgcatatac aagatgctat
    18661 gatagaagat ggagtggctt tatgtaaatt ttttgcctgg cttgaagaag cgataaaaaa
    18721 taaagaacta ataagcgaat tagacataga tgttaaagca agcgaattta gagcgcaaag
    18781 caagtactac ataagtgata gttttgccac tatagcaggc tttaacgaaa atgcagcata
    18841 tccacattat aaagccacaa aagagagttt tgcttatctt aaaaaagatg ggcttttact
    18901 tattgattct ggtggacaat ataaaaacgg cacaacagat attacacgcg ttgtaccaat
    18961 aggaaaggct aatgcagaac aaattcatga ctataccttg gttttaaaag cacatattgc
    19021 catttccagt gcaatttttc caaaagatat aactatgccc ttacttgatg caatcacacg
    19081 cgcaccttta tggaaagaac aaattgacta tatacacggc acaggacatg gcgtgggata
    19141 ttttttaaat gtccatgaag gtccacaagt tttatcttat ctatcccctg tgcttgaaaa
    19201 aacaaaagcc aaagaaggta tgctaacctc catagagcca ggtatttata aagtaggtaa
    19261 atggggcata agacttgaaa atttagttat tcataccaaa gtagaaaatc ctaaaaataa
    19321 agattttgga gagtttttat actttaaacc tgttactctt tgtccttttg aaatatcttg
    19381 tattgataca aaaatgttag atgaaaaaga aaaagaatgg ttaaacaatt atcacaaaga
    19441 agtatttgaa aaactttctc ctaagctagg tgattatcca aaagctctag tttggcttga
    19501 aaaaagaaca aaagccatct tttaagatac ttttgttaac atagataaat tttccttgta
    19561 ttaaacttat aatttgttta atacaagatt tttaaaccaa ttgctaaaaa agtttttttt
    19621 gaaaaactca atttacaact aaaaattatt taaaatatcc aagttcaatc attttttgat
    19681 aaattttagc tacagttgcc cctgaagtaa tatttctccc accatgttcc aaaagaacgg
    19741 taactacata ttttggctta gaataaggag cataagaagt aagccacgca tgagatctag
    19801 tataatactc aaattgtttt tcatcaaccc tatttttatc tgtttgtgaa aatcccacaa
    19861 cctgagcagt tcctgttttt gctgcaactt tcacattaag attatgcaaa taacgataag
    19921 aggttcctcc ttgctcatta gcaacagcat acattgcatc tcttatataa ggcaattgac
    19981 tcttttcaaa caaagtaaaa atttcttttt tattttcatc catttgattt tctatagttg
    20041 tattattatt ttctatgctt tttaaaaaat gaggtataac ctctccacct tttgcgattt
    20101 gagccgtata tctagcaatt tgcataggtg ttgcaagaaa attaccttga cctatagctg
    20161 tatttaaagt atcaccttga aaccaagatt gtctatatct ttgcatcttc cattctttgc
    20221 ttggtaaagt tcctacaaat tcactaggta aatctacccc tgttttcgct ccaaagccaa
    20281 tgcgagataa agtttcactt atttgatcga ttccaacttg caaactgcca ttataaaaat
    20341 aaacatcaca actatatttt atcgcatgtt ttaaatccac aggtccatgg cctgatcgat
    20401 tccaacatct aaaaaacctg cctccaagtt caatgcttcc attgcaaaca tattgagtcg
    20461 acgggctaat atttttagaa tttaaaaaag aaagccctac tcccattttt acaacagaac
    20521 ctggaggata atatccattt ataagtttat ttgtaaaagg atgatcaaga ctatttgaaa
    20581 gctcatccca atccttaaaa gaaatccctg ttacaaaagg attaagatca tattcaggga
    20641 aactccctgc agctaaaata gatccatcat ttacattcat aattatagca gctccagcat
    20701 tcccttcaaa caatgaagtt aaataagact gaagctctat atctatcgta agttctatat
    20761 cattagacat agcaggagtg taagaaagct gttctacttc ttgatttaag gcattaacct
    20821 tataaaccct agttcctttt tctccttgta aaatatcatt ataatagcgt tctataccgc
    20881 tttttcccgt atagttagaa agttttgcta tttcattttc ttgaacatct tgcaaatttg
    20941 ccttacctac atacccaata atatgcgaag ccaattttcc aaaaggatat tttcttttta
    21001 caacaggatc tatttttatt gttttattaa gatttaactc tgaataatgc ggaataatct
    21061 catcgtaggg tataaaatct acaactttaa taaaatcttg attatagtaa gaatcatttc
    21121 tcttataaat ttctgctaat ttactagcat ttaaatcagg aaataaattt gtaagttcag
    21181 ataattcttt atctaaaatt cctttatttg actttttaat acttaaataa ggtttaatag
    21241 aaatactaaa acccaaatca ttaatagcca ataaagttcc atttctatct gtaatttgac
    21301 ccctaacagg tggtaaaaat tcagttttta tggcattttg tttagcaagc tcttcataat
    21361 atacatttga ttttatactc aaataataca cacgacttaa taaaaatata aaaaacaata
    21421 gtataaatcc aacaactaga cgcattctca tttaaatttt acctttaaaa aacacataag
    21481 ctaaacaaca ttctataaaa actgaaacaa tatacgccca tcctaaaatt ttaatttttt
    21541 catctccaat ataaaacaat atcatatcca aaaacaaaat aatgccgtaa gcacaaagca
    21601 caaaaacaac agggataaat ttaccaattt ttaaatttgt cttaatccaa tctgcacaaa
    21661 gataataaaa aataaaaaat gccaaccaag atgaaaaaat aaaaaaatta taagttatat
    21721 cagtaaaaaa taaaaaaaat aaagaaaaat accatctaaa atcaagcttt gaaaaagttc
    21781 tctctctctc ttctaataag caaaacatat aacagaaaaa aatcccataa agtaacgggg
    21841 tatatacaaa agtcgaacca agaatctgat aaattagaaa aaaaaatcct aaaaagacat
    21901 aagctccatt aaattttgct ttataagcac ttaaatttct tctcatttat caagacctaa
    21961 agtttgattg ataataatat cttctaaaga atcaaggcca aatttattca aatttgaaac
    22021 taaaatagag tctttaaatt cattttttaa cttagctttt tcactttgat ttaatttatc
    22081 gcatttggta aaaactttta aaattttttg atcaggtcgt aaaaatcttt tcaaatagtc
    22141 atttaaattt acatcgatct ctaaatgagt atgtcttgag tcgattaaat gtataaataa
    22201 ctttatcgag gttcttaatt ttaaaaattc atctaagttt tgattccata tttcttttaa
    22261 atttttagaa acctttgcat aaccaaaccc tggtaaatcg ataaaattga tattaaattt
    22321 ttcttcattt cttttgcaag ctacttcgaa aaaatttata agctgagttt ttccaggagt
    22381 tgccgaactt ttggctaaat ttttttgttt acacaaagaa ttgattaaag aactttttcc
    22441 gacattagaa cgccccaaaa atgctacttc actaaaattt gagctcaaat tctcatcaaa
    22501 tttcactaaa gaagtgataa atttagcact aattatcatt tgtctttaag atcaaacaca
    22561 aaacgagcag gtttttgatc cttactctcc actcgataaa tattagcttt tctatcgact
    22621 attattttat caccaaaaag tttttgattg cttccaagct catttatata agcatgacca
    22681 ttaatctcgt aagtatcttt aataacatta taaataaatt tatctccact acctttataa
    22741 gttttacctt ttaaaacaat cttaaaccta gcattttgca ttgcttcata acgaataggt
    22801 ttgcgatttt tatccgtata aataatcaat ttttcagaat ttaaaatatc atcacctcta
    22861 attacttcta catttccact aagaatactt tcacccttat tttcatctga gtaaaaattt
    22921 aaagctttta cttcaatttg agttgcccaa gttacactta cacaagctaa caataaaatt
    22981 atttgtcttg caaccacgca tttactcctt ggatatttaa aattttgttt tttacatcat
    23041 agtttaaagt atttccgtta ataatacttc cattgatcag agctttaaaa ttagtatttg
    23101 tatgtaaaat tttatcctta ggttggtatt ctacctcttg agaaataatt ttgacattat
    23161 tagaacctat ataagtaaca tttccttcaa acaaaacctt gctcatatct ttattgaaaa
    23221 actctaaacg attcgcacta agattaaaat ctaaatttaa agtaataaaa tcattaaatt
    23281 catctctatc tgcatatctc acccaagaat ttgccttata atatgcctta attgtactag
    23341 cattactctc ataagctttc aaatttttag cctcaatatt tttaaaattt aaagcattag
    23401 tttgcaaatt caaagaatat ggatcttgca aacttaaaat cgtaaaagta attgtaaaaa
    23461 gagcaattaa aattccaaaa atttttatag ccaaagctta ttccattctt cctctagatg
    23521 atttttttct actaaaattt ctatcatctg tgctacagca gccttaccac cttttttgct
    23581 aagcattatg tctacattta aatctttatg accatctttt ggcttaaaac taagtcctac
    23641 actttcaagc aaagccttat cgttaaaata atccccaata gccgcacact gagaaaaatc
    23701 taaattaagt ttttgtaaaa tttcttttgc gcaagctaac ttatccttaa taccttgata
    23761 taaaatttct atttttaaat ctttagctct tttttcaaca caaggacaat ttctacctgt
    23821 aataatagca atttttttac caagctttag ccaagcctcg atagccgctc catcttttac
    23881 atcaaattct ttaataaatt ctccattaga agtataaata atttttccat cagttaaaca
    23941 gccatctaca tccaaaaaaa tcaattctgt cataatttct actctcttac aacaaatgca
    24001 cctacaaatg caccacttgc agcaaaatct cttgcttcat cttcacttct aaagcctgtt
    24061 aagaaaacgc gatttaagcc atctactgag cttgtgcgta tagtagagct ataagttcta
    24121 taagttttat atcttgctgc tatcgtttgt gctccagctg ggtttttaaa ggctccaatt
    24181 tgaaccataa aatttccacc ttcataaatt tgtccattat ttgcaatctc tccactattt
    24241 ccatagttta cattagaatg cacaatatta ttacccgaat tacttgatcc aaaccctata
    24301 acctcaagcc ttactggagc tgttcctgaa gcaatcatat caatttgact agcagctcct
    24361 tttgataaat ctataatacg attatttaca aaaggacctc tatcattcac acgaacggta
    24421 acttgacgat tgttatttag attggttact tttaagatgg tattcatagg taaagtttta
    24481 tgagccgcgg ttaaagcatt ttgattatag gtttcgccat tagaggtttt cttgccgtga
    24541 aagcctggcc cgtaccaact cgcaatacca tcagcagttt cgcctactgc tacaacagta
    24601 ggataataag ttttaccgtt gatagtataa ggcttcattg ttcctttagt ccctgaagaa
    24661 ctaggactgc ttttaaaatc atttgaagga taatacactt gagcattatc caagctagaa
    24721 aaaaaactag tgcctaaaca accactaaaa aataaagccc ctagactaac ggctgacaac
    24781 tttagtgtaa ttgtttttat ttgcattttt attctccttg attggtataa ttaatttttg
    24841 attaatgcta agatgatttt ttgctatttt attgaattct cgaatttcat caacacttat
    24901 attataattt tttgctattt tatataaaga gtcaccagac ttaacggtat aagttcttgt
    24961 cataggtata gttgtatcaa ccttcgcaag tttttctgct ttaaaatttt tatcaaaaaa
    25021 tgctacttta ttaagtggta tatacatata atacccttta ccaggaggcg taaaattatg
    25081 tttaaattgt ggattatatt tcttaaaagt tgcaagatcc atatttaaat ttttagctat
    25141 ttcttttaaa gatgcagaag aaggcacatc aacttttgca aattcattgc ttaaagcata
    25201 attcattaaa gacgcatctt tatctagtaa aaaatcccta tcattagcta aaaaagcaag
    25261 cgttaaaatc tttcttataa aatttctagt ttctaaagaa agatatttct tatcagggtt
    25321 caataaaaca cttaaatcat cacttcctgc ttgcttgata gcttgtctta gcttgccatt
    25381 tccgcaatta taagctaaaa gtgctaaata ccatttgcca aattcttctt ttaactcttt
    25441 taaataattt gtagcggcat aagttgactt gaccggatca cgcctttcat caacataagc
    25501 atcgattctt aaacccaaat ttctagctgt tggttgcata aattgccaaa cccctacagc
    25561 cttggcatta gaaacactat gagttttcaa gcctgattca accatagcta gatacaaaat
    25621 ctcatcagga acttcctgct gggctaaaat ttttcttatc ataggagtaa cttttgaaaa
    25681 attttgcata ctatctatta aagtttgagc atgttttgat tttatatctt gttgagtttg
    25741 cacaaaaatc aaatcactaa taaaacttgg attaatatct aaatttctta aaacattcat
    25801 ttgtctttca taaaattcag gagtattaat ttgcgcaaaa agaaaattaa aacatattaa
    25861 aaaacacaat aaaatttttt tcattaataa cctttaaaaa ataatttttc agaattgtta
    25921 aaacaaattt ctagaagctc ttttcttgat aaattcaata cttcacacat tttgtttact
    25981 acaaattgag ttaacaaagg ttcatttctt ttaccacgat aaggctctgg agtaagatat
    26041 ggagcatcag tttcaagtag tagtttatct tttggaattt taggcaaaat ctcaactaat
    26101 ttcttagcat ttttaaaagt taaaactccc ccaataccaa aataaaatcc ctcttcaaaa
    26161 agagttagca aatgttcgct tgcattaaag cagtgtaaaa ctcctcctac aagatcctta
    26221 gaatacccat gtaaaatctc ataagtatca tgatttgctt ctcttgagtg aatgataaca
    26281 ggttttttaa attcaatagc aagctcaagc tgtgcaataa aaatcttttt ttgattttct
    26341 ttttcttttt gaatttcttc agcaagatca cttttaaaac ggaaataatc aagcccacat
    26401 tcacctacag ctacacactt ttcatcgcat aaatactgcc ttaaaatttt ctcatcataa
    26461 ttatcaattt cataaggatg cacccctgct gcaaaaaaaa tatttttata tttatgagca
    26521 attgtagctg cataaggcaa gtcttttata tcagcaccag gtatgatgat tttctctata
    26581 ccatttttaa aagcacgatt taaagtttca tctaaatcat ctttaaatgc ttcactgtct
    26641 agatggcaat gcgtatcaac aatccttaaa ccatcttgaa aatcaagatt taagaacata
    26701 cttcaactct atccttgccg ttatcttttg cttgagacaa tattttactt gctttatcaa
    26761 ccaaagaatc aatcttatct ccactttttc caaaaaccac gcctatagaa gctgtaaaaa
    26821 agacttcatc taaattaact aaaacaccag ctttttttat atttactcgt atacgagaaa
    26881 agattttaat cgctctttct tgagatatat ttttaagcaa aatacaaatt ttttctgcac
    26941 tatatctacc tacaagatct cttcctttag tttcattaac tatttcattg gcgcagattt
    27001 taattacttc atcaccaact tcacggccgt attcatcgtt aatcatttga agattatcta
    27061 tatctaagaa agcaaaagca aattcctcgt cttttgttgc tatttcgtta aaataatcat
    27121 ctattccatc gattaaagca ttataatttt taaccccaga tacaagatct aaaacattat
    27181 aagtgcttaa aaatttttta tcatccatgt aagataaaca acgatctaag cgacaattaa
    27241 aactttcttt gcttaaaggc ttaaacaaat actcattaac tccattttta aaagaattcg
    27301 cttcaaatga atcattatga tcccccaaaa gaatcacacc taattcatca tcactaaaac
    27361 gttctcttac ttgagtcaaa agctcaaaac cgctaattac tggcatattg acatctgcta
    27421 taataagctt aacatcatta ttatcattta aataactcat tgcttcttcg ccatgagccg
    27481 cagctaaaac attaaattgt ctttgagtaa gtattttttt aatttcatta cgttcaggta
    27541 gcttgctcat agctacaatc actttagttt ttgcatattg attaagtttt acaatagaac
    27601 taataatctc atcaatgcaa gtttcacttt ctttaaaaat ataatctaat atatctttat
    27661 ccataaattt ttctttagta gccttatcac cactagccgt aagaacaata gcaggaattt
    27721 tcttttctat aacataatcc acaacttcac catttggggc atctggcaag cataaatcca
    27781 caaaagctaa aaaataatca ttattcatta actccttagc ttcagcaaaa ccaaaagcaa
    27841 tatctacctc ataatctaaa gtcatttgaa tttttttagc caaaagtttg ccgagcattt
    27901 tattgtcatc aataattaaa attttct
//
LOCUS       DARBAR010000006        27467 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.006, whole genome shotgun sequence.
ACCESSION   DARBAR010000006 DARBAR010000000
VERSION     DARBAR010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27467)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27467)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27467
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.006"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            242..1618
                     /locus_tag="SB815_000169"
     CDS             242..1618
                     /locus_tag="SB815_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEG0905945.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
     gene            complement(1615..2421)
                     /locus_tag="SB815_000170"
     CDS             complement(1615..2421)
                     /locus_tag="SB815_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HEG0905946.1"
                     /translation="MRGIFYIIALFSLLNADELTEALAKNNNQNSWEHFDYKNTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENVQVKNLSSLYEGENNSLL
                     FQKELFVAQNNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKNLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            2563..4089
                     /locus_tag="SB815_000171"
     CDS             2563..4089
                     /locus_tag="SB815_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEG0905947.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWVASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            complement(4097..5275)
                     /locus_tag="SB815_000172"
     CDS             complement(4097..5275)
                     /locus_tag="SB815_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG0905948.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDANGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(5285..6181)
                     /locus_tag="SB815_000173"
     CDS             complement(5285..6181)
                     /locus_tag="SB815_000173"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEG0905949.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGAKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILVELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQSLLKQND"
     gene            complement(6178..7596)
                     /gene="gatB"
                     /locus_tag="SB815_000174"
     CDS             complement(6178..7596)
                     /gene="gatB"
                     /locus_tag="SB815_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEG0905950.1"
                     /translation="MFEVVIGLEVHAQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHESNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKVRFIDKLGIKESDAEVLISSLEMSRFFESLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            7711..8205
                     /gene="luxS"
                     /locus_tag="SB815_000175"
     CDS             7711..8205
                     /gene="luxS"
                     /locus_tag="SB815_000175"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEG0905951.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSIAK
                     AWEAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIINNKELK
                     LENA"
     gene            8517..9509
                     /locus_tag="SB815_000176"
     CDS             8517..9509
                     /locus_tag="SB815_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HEG0905952.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGSKDYREQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKAFAQALDLPNNA
                     FDKLYGENSYEHCKIIHYPKSSKNITQGVGSHKDGGLITFVFQEKQSGFEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            9520..10290
                     /locus_tag="SB815_000177"
     CDS             9520..10290
                     /locus_tag="SB815_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG0905953.1"
                     /translation="MTLFTKAFCVATLFTGFAWANEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKEFHPKEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLDDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSNEVKKFIEEKYQGALIPTF"
     gene            10302..12566
                     /gene="metE"
                     /locus_tag="SB815_000178"
     CDS             10302..12566
                     /gene="metE"
                     /locus_tag="SB815_000178"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEG0905954.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     QYGFAKDKILFAGLINGKNIYANDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSSYLKLFAFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRTKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            12576..13424
                     /gene="metF"
                     /locus_tag="SB815_000179"
     CDS             12576..13424
                     /gene="metF"
                     /locus_tag="SB815_000179"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEG0905955.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEVASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLKKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALADIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNTLALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(13446..13637)
                     /locus_tag="SB815_000180"
     CDS             complement(13446..13637)
                     /locus_tag="SB815_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905956.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(13634..14314)
                     /locus_tag="SB815_000181"
     CDS             complement(13634..14314)
                     /locus_tag="SB815_000181"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEG0905957.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHAP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            complement(14383..15723)
                     /gene="radA"
                     /locus_tag="SB815_000182"
     CDS             complement(14383..15723)
                     /gene="radA"
                     /locus_tag="SB815_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEG0905958.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            complement(15723..16589)
                     /gene="ftsY"
                     /locus_tag="SB815_000183"
     CDS             complement(15723..16589)
                     /gene="ftsY"
                     /locus_tag="SB815_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEG0905959.1"
                     /translation="MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            complement(16589..17146)
                     /locus_tag="SB815_000184"
     CDS             complement(16589..17146)
                     /locus_tag="SB815_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG0905960.1"
                     /translation="MKIKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISVKKENAVLNFNDEDKVTLFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            17229..17855
                     /locus_tag="SB815_000185"
     CDS             17229..17855
                     /locus_tag="SB815_000185"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEG0905961.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYKIFKECLKIIKLFKAKNI
                     LIFIPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPIDSF
                     FKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFIQSIDALSQNNLTQ
                     KHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            17776..19329
                     /gene="rny"
                     /locus_tag="SB815_000186"
     CDS             17776..19329
                     /gene="rny"
                     /locus_tag="SB815_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEG0905962.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKFQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQKHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            19338..19895
                     /locus_tag="SB815_000187"
     CDS             19338..19895
                     /locus_tag="SB815_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG0905963.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFTAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLSKFSKK"
     gene            19895..21154
                     /locus_tag="SB815_000188"
     CDS             19895..21154
                     /locus_tag="SB815_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEG0905964.1"
                     /translation="MSLWNSFSYSFKEFHYLFFSVVVIFIFNILLEYNNFLNFKNQKH
                     YLIDNALLTHQYIKYNKKNKKYWVLKLQTENFTFYTTSFKDLNLSKNQFLSLRIITHN
                     INFKDYLSKSFYAPSYDFEKLKEKEYNPIISYFLNQHTNEKIKEFYGALFFALPISLE
                     LRNDVNYYGIAHLIAISGYHIGLLFSLIFFILAPIYSFFQKRYFPYRNLRLDLSILIF
                     ALLLAYACLIGFVPSFVRSLIMAFWVFYLLCKNIKIINFVTLFCSILLCISLYPRLLF
                     SIGFLFSILGVFYIFLYMHHFANKFNNLINIILLNIWTFFAMVLPVLYFFPLISYQQI
                     LGIILSGIFVIFYPLVLFLHLINYGDLLNFILDEFFKFKIYGTNIHIPFWIFISYLIA
                     SLISVRFKYLAFLCIFANFIPFIMIVI"
     gene            complement(21098..21904)
                     /locus_tag="SB815_000189"
     CDS             complement(21098..21904)
                     /locus_tag="SB815_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEG0905965.1"
                     /translation="MKNFFNILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGAIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(21908..23290)
                     /locus_tag="SB815_000190"
     CDS             complement(21908..23290)
                     /locus_tag="SB815_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG0905966.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            complement(23293..24018)
                     /locus_tag="SB815_000191"
     CDS             complement(23293..24018)
                     /locus_tag="SB815_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HEG0905967.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSIFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDFR
                     QFCDDNAVGILVVALENHAEVVDCQDFNKLYEVPISKPTSVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            24140..25300
                     /locus_tag="SB815_000192"
     CDS             24140..25300
                     /locus_tag="SB815_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG0905968.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAEYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            complement(25297..25500)
                     /locus_tag="SB815_000193"
     CDS             complement(25297..25500)
                     /locus_tag="SB815_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905969.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEISEK
                     EKEELATLLNSLINAKDKALLSN"
     gene            complement(25502..26182)
                     /locus_tag="SB815_000194"
     CDS             complement(25502..26182)
                     /locus_tag="SB815_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphenol oxidase family protein"
                     /protein_id="HEG0905970.1"
                     /translation="MGRSRKNFLSLLENDKVGIFCAFDKDYNVFRAKIHNENLFSHLG
                     FKDIEKCVFMDQIHSHKVIIYDENLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGIYAKNYEIDGEILE
                     FAKKEFKEFVQDNKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTPKRF
                     VSVVYLKD"
     gene            complement(26146..26757)
                     /locus_tag="SB815_000195"
     CDS             complement(26146..26757)
                     /locus_tag="SB815_000195"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEG0905971.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGACLSVT
                     KLYEAGFEVELSRESRTHMAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFHISLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            complement(26766..>27467)
                     /locus_tag="SB815_000196"
     CDS             complement(26766..>27467)
                     /locus_tag="SB815_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905972.1"
                     /translation="DFSKLGFLLDRKLKGKAEFNGKVGFDKNLNFVVNSPNLFEGKLQ
                     STFKDNLLLADLNGVDLSSLAQGLDFMDIYQGKADMKANYNLLSEEGEVNLDMKEGKL
                     KPNLITNALKILTLKDITNDVYRTANAKALIKKENIKLNLNMQADRSYILVQSGALNS
                     KSGALNLPFDIKLDRANFKGSITGTTENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTG
                     DKVDKAVNKLLNKIF"
BASE COUNT         9730 a         4610 c         3843 g         9284 t
ORIGIN      
        1 aaatcaaaaa tagaattatt accaataaca aacaacaaaa agcaaactga attgcaaaat
       61 tataaaattt tcaaaaatat tttaaatttt ataatgcaaa taatgagaaa ttttgtaacg
      121 tttatataaa aaattatcat atcatataaa agaaagtatt tctagatttg tttttttgtt
      181 aaaatttacg atacacattg ttaaaattat attttacaaa gatcaaaagg agtgaataaa
      241 cttggaaact ttaagtcaaa ctttagctga aagaaaaccg cctttatata aacgtattat
      301 caaaagtctt ggattttggg tgattatagg cattattaca ggtattgtac ttggctatac
      361 agataaagaa ttagccattg ctagcaaacc aggagttgat tattttatag gtgctttaaa
      421 ggttcttata ggccctatta tttttgttac tttggttttg ggcatcatta gtcttgaaag
      481 tttaaaaaaa gtaggtagca ttggtgctaa agcggttatt tactttgaag ttgtaagtac
      541 tttagcactt gctataggta tttttatggc aaatgttatg caaccaggcc atggaatgaa
      601 tcttgatcca agtcaacttg atacaaaaag cgttcaaaaa tacatttctc aaaccacaga
      661 agtaagtgcg agctctgaga ttatgcatat tttaaaagat gctatgccta ctgatattat
      721 cacacctttt acagaaggaa aaaccataca agttttagtt attgctataa ttactgcttt
      781 gattatttct ttaatgagaa tagaagacaa acaggcaatt caaagagttt ttgaagtggt
      841 acaaaatttt gtttttaaaa ttctacaaat cattatgtat tttagtccta ttgccgcctt
      901 ttcagcaatg gctgtactca tagctcaata cggaattggc tctttgatca acttagcata
      961 tttactttta gtaatgctga tttcatgtct tgtttttata tttggaatct taggtctgat
     1021 ttgttatttt gcaaaagtaa atatcttcaa atttatgaga tttatctcaa gagaagtatt
     1081 gatcgttttt gcaaccagtt caagcgagtc tgcacttgct cctttaatga gaaaactaga
     1141 aaaagcagga ctttctaaag caacagtcgg acttgtttta ccaacgggat atagttttaa
     1201 tcttgattgt acaaatattt atctagctat gagcttaatc tttctagcac aagctttcaa
     1261 tgtaaattta agtttagcac acgaaatcag tattttaata gtattaatga tagcctcaaa
     1321 aggtgcagta ggtgtaactg gatcaggttt tatagtgctt ggaagtacgc ttgcagctct
     1381 aggaaatatg gaaatttcag aagcaaatgc aaccttagca caagttctac cagtagctgc
     1441 tataggtgtt cttttaggtg ttgacaaatt tatgtctgaa atgagggcgg ttggaaatct
     1501 ttgtggaaat tcagtagcag ctttaatcgt tgctatctgg gataaacaaa ttgattggga
     1561 aaaattccgc tacgctatgg acaatccaga aaaatttcat aatgctggaa tgaactaatg
     1621 agttctttgg aggaaatcat atcgattaac ctcctctaaa gtattatctt tttttctaaa
     1681 ttgctttaaa aaactttcat tgaaattaaa actaaatcca acttgaacaa cagtatcatc
     1741 aacagtctct cttgcactat aatcacgacg caataaattt aaactaaata cactataagg
     1801 agagtaagat acttgataat tagttttatc attatcctta cttatatcaa aagcaaaagc
     1861 ggtataagtt ggaattacaa aactcattcc aagctgtaaa tttttttctg cttcattggg
     1921 tatataataa ttactataag cctttataaa tttactataa ccaaactctg taccaaagct
     1981 tttagtatct ttttgttcct tttgtttatc aataaaacca ttaactccaa ataaaaaatc
     2041 atctttttca taacgattga ttaaaccccc tgagtaatta taattatttt gagccacaaa
     2101 aagttctttt tgaaaaagca aagaattatt ctccccctca taaagagaac ttaaattttt
     2161 aacctgcaca ttttcatttt gaaaatctaa attcccatct gttttatcta taccattatt
     2221 attttctaaa gtttttgaaa gtaagctatc aaaagtgctt ttaaaatcca cattctcttc
     2281 ttgaattttt ggagcttctt tggtattttt ataatcaaag tgctcccaag aattttgatt
     2341 attatttttt gctaaagcct ctgtaagttc atcggcattg agtaaagaaa acaatgctat
     2401 tatataaaaa atacccctca ttattcttat attccttatt atttcttgtt tgagtattta
     2461 ttataaaaaa ataatataaa taaaaattcc acaaagacta aaaaataaaa ttagcaaatt
     2521 taaagtaaat aagtgtataa ttaaaataaa aaagggttat taatgcaaaa agacaacctc
     2581 atagcttttg ttatttttat tatcagtact atcgcatttg ttatttgggg atttggttat
     2641 atttcgcaac atcaactgat tctttttatt cttgcttcta tatttggtat ttttatggca
     2701 tttaatatag gtggaaatga tgtagccaat tcttttggaa caagcgttgg cgcaaaaaca
     2761 gtaaccatta aacaagcttt aattatagca gctgtttttg agctaagcgg ggcaatcttc
     2821 gcaggcgcag aagttactaa aaccatacgc agcggtattg ttatttttcc aaattcttta
     2881 gatcctatgc tttttgttat cattatgctt gctgcacttt taagctctgg ggtttggatt
     2941 tttattgcaa ccaagaaagg cttacctgta tcaaccacac acagtatagt tggtgggatt
     3001 gtaggtgcta gcattatgat ggggctttta aaatttgatg ggatccaaac actctctatg
     3061 gttaaatgga gtgaaatttt aagaatagct atttcttggg tagcttcgcc tcttttaggg
     3121 ggtattgtag cttatattat ttattcatat attgataaaa aaattttaaa accatcagaa
     3181 aaactaaatg atgatttgaa aaatatcaaa aaagaaagaa aaaaattcaa agaagaatat
     3241 tttttaaatt taaaaacaaa atcccaagaa gaacaaatca aagaactttc cgctatagct
     3301 ttagatgagg aagaacaaga aaataatttc tatagaaata aaatgaagga atttaaggat
     3361 caagaaaaag atatagatat ttactctatt ttaaaaactc atatgccaat cattgcttgt
     3421 attgctgctg ctatcatttc ggcaatgttt ttatttaaag gtttaaataa tgttagcact
     3481 ttggatattt tacaaaactt ttggattatc ggaattatag gaactataag ttatgttgta
     3541 acatttgcta tagtcaaaat cgttaaaaaa acagaactta ataaaactac tgatagaatt
     3601 ttctcatggt ttcaaatatt tacagcctct agttttgcat tttcacacgg agccaatgat
     3661 atagccaatg ctataggtcc ttttgcagcg attttagatg tcttaaaaaa cggcacaatt
     3721 aacgcgactt ctcctgtacc ttttgctgct ttagctatgt ttggagttgc tctagttgta
     3781 ggactttggt ttttaggtaa agaagtgatt actacagtgg gttcaaaact tgcaaccata
     3841 cgccctacta ctggattttc tgcagaactt ggtgcaagta tagttatact cttagctaca
     3901 caatttggaa ttcctgttag ctccacccat atactcatag gtgctatatt gggtatagga
     3961 gtgtataata aaaacgcaaa ttggattatg atgaagccta taggattggc ttggattatc
     4021 actttaccag ccgctggtat tatggcagca cttgtatttt taggatttaa actatcttta
     4081 ggaatttaag taaagcttat ttttctaaaa tattttttcc tttaattata tgcattttaa
     4141 tctttccaaa aagtttatcc tcagaataaa gagaactttt tggagcaaaa atttcttcat
     4201 tctcatcaaa aagaactaga ttagcttctt tgccaacttc tataactcca ctatttaaac
     4261 ctaaaaattc actaggattt ttacttgtaa atcgacaaag ctcttgccaa tttaaaaatc
     4321 cttctttgat taaaaaagta taacaaagac ttataaattc gcatacgcta tgaattccaa
     4381 aagccgcttc atcaaaagct aaatctttta aagaaattga ttttgcacta tgcagggaag
     4441 ttaaaaagct aatctttcct tcttttaaag cctctcttaa agccaaaaca tcttctttgc
     4501 ttcttaaagg tggcataagt ttcgcagccg tattaaaatc ttcacaagca ctatcatctt
     4561 tgataagatg atgaatgctt acaagtttta aatccttttc atctaataat actaaagaat
     4621 ctttcaaact taaaagatca aaaataactt tatttttata aaatttagcc aattctttca
     4681 ttttagctat ctggctagtt tcagcgattt tactcatgcc tataagccct agctcaaaac
     4741 tcatttcaca atcattcatc actccattat catcaaaatc cttatcataa caacgcacaa
     4801 aaattggaga gtctttcata aaagcatatt gtgaacttac ttttaaagta tttgcatcta
     4861 aagagctgtc aagttctaga gcacaagcac ctttatttaa aagagtggct aaatttttaa
     4921 gcttgccgtt tgcatcctta acccgcacac ttgaaaaaat ttgcatcttt ctttgagcta
     4981 aattttgtaa aaataaagca aaactttctt catcaaaatc catgcaatca cgcaaaacta
     5041 tactagaaat tcctcctttt agacactcat tttctaaaag ctctaaatta gctaaagaaa
     5101 atttatcgtt ttttaaactc acacacaaat ccacaaaaga tggaagtaaa gtcatacctt
     5161 tagcatctaa aatttcttcg ccttgtaaat tagaaccaat attggtaatt tttccttctt
     5221 taatctctat atcttgtaaa gaatctccat aaatttttgc atttttaatt atcatgattt
     5281 ttccttaatc attttgcttt aataaactct gcgttgcttc ttgcacgctt ttacccttaa
     5341 aaattgccac tacttcattt acaataggtg tataaattcc tttcattttt gctagttttt
     5401 ctatagcata agcagttttt acaccttctg ctacttcatt aagttcgact aaaatactat
     5461 ctaatttttg attttgcgcc agttttaaac ctactctata atttcttgat aaaacactcg
     5521 ttgcagttaa aaacaaatcc cctgccccac ttaaccctaa aaaagtttct tctttagcac
     5581 caaaaaattt accaaaacga tgcatttcta taagccctct tgaaatcagt gccgctcttg
     5641 cattattgcc aagttttaac ccatcactaa tcccacttgc aattgctaaa acattcttat
     5701 aagcaccaca aatttcagca ccacgaacat cattatcaat ataagtttta ataaaatcag
     5761 ggaaaaaact tgcaaatttt ttacaaagct cttgatttat cccgctaatc atcaaagcag
     5821 taggaagttt ttgcattact tcagcagcaa aagaaggacc gcttaaaaca caaaaatttt
     5881 cttttggtac aaaatctaaa aaaatttcat ctaaaaattg acaactttga tcttctatgc
     5941 cttttgaagc aattaaaatt ttttgtccct tgttgatgaa attttcttta agccaagcac
     6001 gcatcccttg agaacttaaa gcaaaaacaa gatattcaca ttctaaagct tcttttatgc
     6061 taacaaaatc ttctaaatca cgctgatgca aagaactgat aaaacaattg tgattttctt
     6121 ttaaggctag atgtaaagca ctgccccatt ttcccgcacc aataaccgct atacgcatca
     6181 accaagcttt gtttttaaaa tttcatttac ttttgcagga ttaaaagctc ctttgccttc
     6241 tttcattgtt tgacccacaa aaaatccaaa aagcttgtct ttaccacttt tatactctgc
     6301 aaccttatcg gcatttgcat ttaaaatttg ttcaatcacc gcttctatgg ctgaatcatc
     6361 acttacttgc ttaagtccta gcttttctat agcttcatca atttccacgc tagtattttc
     6421 aaatacaaaa gctaagacat ctttagccgc ttttgcactg atagtgccat cttctatgcg
     6481 tttaattaaa actccaagct tttgagcatc tacaggagaa ttttctatag tcaattctcc
     6541 ttttaaaagt cccataagtt cagtatttaa ccaatttacg caaagtttag gatttaaatt
     6601 ttgagaaata agactttcaa aaaaacgact catttctaaa gaactgatta aaacctctgc
     6661 atcactttct tttataccaa gcttgtctat aaagcgtact ttcttctcat caggaagctc
     6721 agggatttta atatccaaaa actcatcttt taataaaaca ggcaataaat caggatcagg
     6781 aaaatagcga tattctgccg cttcttcttt gccacgcata cttcttgtaa ctaaatttgt
     6841 cgtatcaaaa agtctagttt cttgaactac ttcttgttcg taagttccat cttcccaagc
     6901 ctcactttgt ctttttacct catattctat agctttttgg ataaaacgaa aagaattaag
     6961 atttttaatc tctactctag tataaagttt tgtatcgccc ttaggtctta tactaacatt
     7021 tgcatcgcat ctaaaacttc cttcttgcat atttgcatct gaaatgtcta aaaagcgtat
     7081 aatagaatga agttttttaa gataagctac tgcctcatcg ctacttctaa gctcaggctc
     7141 actgacaatc tcaagcaaag gagttcctgc acgatttaaa tctactttag aaaaattact
     7201 ttcatggata tttttacctg catcttcttc caagtgcgct cttgtaatac ctatgcgttt
     7261 attttcaccc tttacattga taaaaagctc acccttttct actataggga tatcaaattg
     7321 tgaaatttga taagccttag gtaaatctgg ataaaaataa ttcttacgat taaaaacact
     7381 ttttttatta attgttgcat tgacagcttt tccaaaagct atagcttttt ttacagcctc
     7441 ttcatttaaa acaggcaaag ctcctggtaa ggccaaacaa gtgggacaaa cattggtatt
     7501 tggagcttct ccaaaagaag ttgcacatga gcaaaagatt tttgtttttg tatttaactg
     7561 agcatgaact tcaagaccta taactacttc aaacataaaa tttccttgaa tttttaaatg
     7621 ttttatttta tctttttttc ttttagaaag gctttaaata ttaactttaa atgctataat
     7681 tcttagacaa tttatattta aggagttaaa atgccattat tagacagctt taaagttgac
     7741 catactaaaa tgccagctcc tgctgtgcgt ttagctaaag ttatgaaaac acctaagggt
     7801 gatgatatta gcgtatttga tttgcgtttt tgcataccaa ataaagacat tatgagcgaa
     7861 aaaggtactc ataccttaga acatttattc gcaggattta tgagagatca tcttaattca
     7921 aattcagttg aaattattga tatttcacct atgggttgtc gcacgggttt ttatatgagt
     7981 ttaattggaa cacctgatga gaaaagtatt gcaaaagctt gggaagcagc catgaaagat
     8041 gttttaagcg taagcgatca aagcaaaatt cctgaactta atatctacca atgcggaact
     8101 tgcgcaatgc attctttaga tgaagccaaa caaattgccc aaaaagtttt aaatctaggt
     8161 attagcataa taaataacaa agaattaaaa ctcgagaatg cttaaaaaga atctttattt
     8221 tttaaatgat taagctttaa ttaatatatt tttatatatg attttgaaat tttattattt
     8281 taaaaggaga aaaaatgaaa ctgatgtgcg agatgtgtag tatctagtgc gtcctttggc
     8341 ttaacattat gtttccaaag gtccaaaaag tggataagga gatataatgt gtaagaaagt
     8401 caaaaaagtt tattttttca aaatactcat ttaaaatctt aacttacaaa aatttctcta
     8461 ataaaatttt aattcaaaat atcttcttat ccttaatttt aatttaagga gcaaaaatga
     8521 acttacctat acttgattta caagcttatg aaaaagataa aagcactttt cttaaaaatt
     8581 taagagaaat tgcttctaaa ataggttttt tttatcttat caataccagt atagataaaa
     8641 atttaaacga gaaattattc aaacttggca aagaattttt taatctttct agaagttcga
     8701 aagagcttat ttctatggta cattctcctc aatttagagg ttatactagc gaaggttttg
     8761 aatacacagc aggatctaag gattatagag aacaactgga tataggcaca gaaagagatg
     8821 ctttaaactg gaatttaaac tcacccttat ggcaaagact agaaggtcct aatctttggc
     8881 ctagtgaaat tccagaactt aaaaaaactt tcttaacttg gcacaaacaa accaaaaaag
     8941 cttgtttaaa gcttttaaaa gccttcgctc aagctcttga tctacctaac aatgcttttg
     9001 ataaacttta tggagaaaat tcttacgaac attgtaaaat catacattat ccaaaaagct
     9061 caaaaaatat cactcaaggc gtaggttcac ataaagatgg tgggcttatc acttttgttt
     9121 ttcaagaaaa acaaagcgga tttgaagctt ttatagatgg taaatggctt agtatacccc
     9181 cacttgaaaa tagcgttgta gttaatatag gagaattttt agaactagct accaatggct
     9241 atttaaaagc tactattcac cgcgtgaatt taagcccaaa agaacgcttt agcatagctt
     9301 attttcttgg agtgcagctt gataaggata tacctatttt taagttaaat ccagagcttg
     9361 ctaaagaaag taaaggtgtg gatactgatc ctaaaaatcc acttttaaga aatgttgcaa
     9421 gtaattattt taaaagaatg atacgctctc atcctgatgt ggcaagtatt tatcatagtg
     9481 acttgataga aaaatttagt tttgcgtaaa ggagaaaaaa tgactttatt tactaaagct
     9541 ttttgcgtcg ctactctttt taccggtttt gcatgggcaa atgaagaact taaagttggc
     9601 tcttctataa cacctcatgc agatatttta agatttataa aatcagcact tcaaaaacaa
     9661 ggttatgatt taaaaattta tgaattcaat gatggagtaa tccctaatgt aatggttgaa
     9721 aatggtgagt tagatgctaa ttattttcag catgagcctt atttaaaaga attcaatcaa
     9781 agacaaggca cccatcttgt aaaagttgcc agtatccata tagaacctat ggcagtgtat
     9841 tctaaaaaac acaaagaatt tcaccccaag gaaggacaaa gcatttctat acccaataat
     9901 cctacaaatg aaagccgtgc tttacgcatt gtagcaagca aaggacttat agaagttaag
     9961 gataatgagc tcatcactcc tttagatatc actaaaaatc ctaagaagct taaatttgta
    10021 gagttaaaag acgctcaact tacaaggagt ttagatgatg tagattattc tcttattaat
    10081 agcaattttg ctattttagc aggtttaaac cctgtaaaag atgggcttta tacagaaagt
    10141 aaatatagtg aatatggcaa tatcatcgcc gttaaagaag gtaatgaaaa ccttcctaaa
    10201 atcaaagccc tagtaaaggc cttgcaaagc aatgaagtta aaaaatttat agaagaaaaa
    10261 tatcagggtg ctttaatccc tacattttaa ggagaacaaa tatgaaaaat tcaatcattt
    10321 cttacccaag aataggtgca aatagagaat taaaatttgc tattgaaaaa tactttaaaa
    10381 accaaagttc taaagaggag cttttaaaga gtgctaagga tttaaggatt agacactggc
    10441 aagaaattca aaaagctggc attgatttta tccctagtaa tgatttttca ctttatgata
    10501 atgtcttaga tgcagctgtg ctttttaaca ttgttcatac aaagtataaa aatttaaatt
    10561 tagatgcttt agatgaatac tttgctcaaa gtcgaggtta tcaaggagaa aatggagatg
    10621 ttacagcctt agcaatgaaa aaatggttca atacaaatta tcattatttg gtgcctgagt
    10681 gcgataatgc tgatattata gctttaacag gggataaaat ttttaaagaa tatctcgaag
    10741 ctaaagagct tggtatagaa agcaagcctg ttttaatagg cattttcaca ctttttaaac
    10801 tcattgcctt taaagatgaa aaaactcaaa aactcgccaa agaaaagctt ttaaacgctt
    10861 acatagagct ttttgataaa ctaaatgaac ttaaagtaac atggcttgaa cttgatgagc
    10921 cttatttggt ttatgattta agcaaggaag atatcgcttt gttcgaagaa ttttaccaag
    10981 aacttttaaa tcacaaaaaa gatcttaaaa ttttacttca aagctatttt ggagacttaa
    11041 gagatattta tcctaaactt ttagaaagca aatttgatgc tttggggctt gattttatcg
    11101 agggaaaaca aagcttagcc ttagtccaac aatacggttt tgctaaagat aaaatccttt
    11161 ttgcaggtct tattaacggc aaaaatatct atgctaatga ttatgctaaa agcctaaagc
    11221 ttattaaaga gcttcaaaaa tatacacaaa atatcatctt aaacacttct tgctcacttt
    11281 tacatgtgcc ttatagcact gaatttgaaa gcaaattaga ttcaagctat cttaaacttt
    11341 ttgcctttgc taaagaaaaa cttcaagaac ttaaagattt aaaagaaatt ctaaattcta
    11401 gcgaagaaaa tccgctcttt agagccaatc aagagctttt taaaaatatc ccagagcgtt
    11461 tagatgaaaa agtcaaagca aggcttaagg ccttaaaaaa agaagatttt accagaacgc
    11521 ctagttttaa agaacgcgcc ttaatccaaa aagaattttt aaaactccct cttttaccaa
    11581 ccacaaccat aggttccttt cctcaaagtg ccgatgtaag atctaatcgc cttgccttta
    11641 agcaagaaaa aatttcagct caaaactaca ctgaatttaa ccaacaaaaa atcaaagaat
    11701 gcatacaaat tcaagaagaa ataggacttg atgttttagt gcatggagaa tttgaaagaa
    11761 atgatatggt ggagtatttt ggagagaatc taaagggctt tttatttact caaaatggtt
    11821 gggtgcaaag ctatggcaca aggtgcgtta aacctcctgt gatttggggt gatgtatcac
    11881 gcacaaagcc tatcacctta gcttggtcta aatttgcaca aagtttaagt caaaaaatcg
    11941 taaaaggtat gctaactgga cctgtaacca tacttaattg gtcctttcca agagaagaca
    12001 tcagtctaaa agaaagcact gagcaaattg ccttagctat aagagatgaa gtgttagatc
    12061 ttgaaaatgc aggtataaaa atcatacaaa ttgatgaagc ggctttgcgt gaaaaactgc
    12121 ctttaagaaa aagtgattgg catagtgagt atttagattg ggctattcct gcttttaatc
    12181 ttgtgcatag cggggtaaaa gctaaaactc aaattcacac tcatatgtgt tatagtgaat
    12241 ttagtgatat cttaaaagaa attgacgcta tggatgctga tgtgatttct tttgaagctt
    12301 caagatcaaa cttaagtctt ttagataccc taaaagctat tcgttttaaa actgaggtgg
    12361 gaccaggagt ttatgatata catagcccta gagttccaag cgtagaagaa ttaagtttaa
    12421 ctatagaaaa aattttaaac aaattaccta aggagcaaat ttggatcaat ccagactgcg
    12481 gacttaaaac aagagcctat gaagaagtta tagcctctct taaaaattta gttacggcca
    12541 cgcaaaaaat acgagaacaa ttataaggag ttttcatgtg tagtttttct tttgaagttt
    12601 ttccaccaag aaaggatgaa aatatcaaaa atcttcatgc tatcttagat gatttagggc
    12661 aattaagccc taattttatc agcgtaacct ttggagctgg aggctctatt aactcacaaa
    12721 atactttaga agttgcaagc ttaatccagg aagaatatca aattcctagc atagtacatt
    12781 taccttgcat ccattctagt aaagaaaaaa tcactcagat acttcaaaaa tgcaaagaaa
    12841 aaaatcttaa tcaaattctt gccctaagag gcgatatatg tgaaaattta aaaaaaagca
    12901 aagatttttc ttatgctagt gatttaattt cttttataaa aaaacaagaa tactttgaaa
    12961 tttatgccgc atgctatccc gaaaaacata atgaatctaa aaatttcatc gaggatatac
    13021 accatcttaa aactaaggta aatgcaggaa cagataagct cattactcaa cttttttacg
    13081 ataatgaaga tttttatact tttaaacaaa attgtgcttt agcagatatt gacataccta
    13141 tttacgcagg tattatgcct attactaaca aaagacaggt tttaaaaatt tctcaacttt
    13201 gcggagctaa aatccctcct aaatttgtta aaattttaga aaaatatgaa aataatactt
    13261 tggctttaga agatgcaggt atcgcgtatg cttgcgatca aattgtcgat ttaatcacaa
    13321 gtggtgtaga tggaattcat ctttatacta tgaataaatc caaagcggct attaaaattt
    13381 atgaagctgt aaagcatttg cttaaagaag agcttcatgc ttagaaaata aactattttt
    13441 tgcttttatc ttaacttatt ttcatttttt agcttatggt tttctataag taaaacaaaa
    13501 attaaagata aaagcaaacc tggtataata cccaagcaaa gatagaaaaa agaattatat
    13561 ttaaaaaaga agaaaagtgc accaaaaagc attaaagcta aagatgcacc tttgaaaaat
    13621 tctaaaatat agatcaatga ccttcctcaa caacagttgc acccgctaaa tatacataag
    13681 ttaaaatcat aaaaataaaa gcttgtaaaa atgccataaa agttaaaagc acataagcag
    13741 gaagtggagc tatataagga actaaagcta aaattaccat taaaaataaa tcgtcgcctt
    13801 taatatttcc aaacaaacgg aaggacaaag aaaccacacg agaaagatga gagactatct
    13861 ctataggaaa catcaaagga gctaaaagtt taataggtcc catgaaatga gcaaaatact
    13921 ttacaaaacc ttgtgcccta ataccctcaa aatgataata tacaaaaact ataatagcca
    13981 aggacaaagt caaatttaaa cttgcagttg gagcgtgaaa accaggtatt atacctataa
    14041 tattactaaa aaacactata atccccaaag ttgcaaccaa aggaagatat tttcttgcac
    14101 ctttttcact tcccatggta tctctaccca tagataaaac tccctctaaa aaagcctcac
    14161 ctaaattttg cataccgcgt ggaacaagtt gcatagaacg agtagccatc atagccacta
    14221 taacagcaat taaagctacc aaacctatgt gaaaaaaata agaaaaagta tgacttgcat
    14281 caagcaaaga gctaaataaa aataaatctt tcatggtttc ctcaaaaatt ttattctaaa
    14341 ctcgaaattt tagcaaaatc ttacttatat tttaatgaaa atttacatcc attctaaaac
    14401 ttgcgaaagt tctttagcaa caaaacactt aagccctata tcttccaaag gcttagaagg
    14461 aacaatggca tttttaaatt tttgcatttt agcttctttt aaacgcgtat caaggctaaa
    14521 aacctctcta atttctccat ttaaactaag ctcccctata aaaatactat ctttgctcaa
    14581 agggcgattt ttaaaacttg aaataatagc tgcaaccaca gccaaatccg ccgcagtttc
    14641 gcttactttt actccgccac taatatttac aaatacatca taatgcccca aaggaatttc
    14701 aagctttctt tcaagcaaag ccaaaagcat atctaagcga tttttttcat agcccgtagc
    14761 gctgcgtttt ggataagaac tttcacacac caaagcttga acttctaaaa ccaaagcacg
    14821 agatccctcc attacaacac ctaaagcact tcctgaaata gcctttccac gagtaaaaaa
    14881 acgatttgct aaatcttttg cactgatcaa acccttagca gtcatctcaa aaatacctac
    14941 ttcattcgtt ccaccaaaac gatttttaaa gcctcttaaa agtctgattt ctttagtggc
    15001 atctccctca aaataaagca ccacatctac catatgctca agaactctag gtcctgctat
    15061 agcaccttct ttagtaatgt gccctatgat aaaagtactg atattataag ccttactcac
    15121 acgcataagc tcaaaagtaa tctcacgcac ctgagtgatg cttcctgctg ctgaagtgat
    15181 tttatttgaa tatagagttt gtatagaatc aacgataaga atgctataat cttttttgtg
    15241 caattcttct aaaatatttt caaggcaaag ttcagtaagt aaaaataaat tcggagtatt
    15301 agcctcaaga cgatcagctc ttaatttaat ctgggcttta ctttcttcgc cactgacata
    15361 aagcactttt ttaccctgtt tagctaaatt tgaagcaatt tttaacaaaa gcgtagattt
    15421 tcccacacct ggacttccgc ctataagcac taaagaacct tcaacaagcc ctccgcctaa
    15481 aaccaaatca agctcattat catctgtgct gtatcttgta aaatgctcta actccacatc
    15541 ttcaatacaa acagcctcac ttgttttcat gctaacttgc gcaagctctt ttaaaacttt
    15601 aatttgctca gcttttaatt ctacaaaact atcccaagct ccacaatcag gacattttcc
    15661 aagccatttg ctttgttgat ttccacaagc ttgacattca aaaagtgctt tattttttgc
    15721 cattattcaa aaataggatc taataaagta tctaaataag cacttgcatt aaattcttgt
    15781 aaatccgtca tttgctcacc cacgcctaca taaaaaatag gaagctcaag ctctcttgct
    15841 atactaaaaa gtgcaccccc tttagctgtc ccatcaagct ttgtgataat cacaccatca
    15901 agttttacaa gctcattaaa agctttagct tgtaaaattc cagcatttcc ctgtgttcca
    15961 tctaaaacta aaatttttct atggggtgcg ccttctaaag ctttgtttga aattcttaca
    16021 attttttcaa gctcatgagc taaatttttt tgattttgca aacgccctgc tgtatcgata
    16081 ataactctat caaaatcctt tgcttttgct ttagaaatgg tatcaaaagc aaccgctgaa
    16141 ggatcatgcc cttgtgcagt taaaactata tctacatcca ctttttgcgc ccaaagtttt
    16201 aattgctcaa tcgcacctgc tctaaaagta tcacacgctc ctaaaatcac tttttgattt
    16261 tggtttttgt ataaataagc aagcttggca atacttgttg tttttcctgc tccatttact
    16321 cctaaaataa gctctacaaa aggtttttct tgattggttt cttttttttc ataaagaaaa
    16381 taagaaccca taacacgctt taaatcttct ttttttactt cattttgagg tggtaaataa
    16441 taaattatct cttcaactat ttcataactt acatctgctt caagcaaaat ttcttcaagc
    16501 aaatctttgg ttatcttttt attctctcct ttaactccaa caatattttc aagagttttt
    16561 gcaagtcctt ttttaaaaaa attaaacatt aaagtatagc cttttgtata tcaatttcta
    16621 gcatttcttc aggaataagc cctaaatact gattaatcaa tttagaatgc ttgttgtaaa
    16681 gaaacatggt aggaattcca tttaccccac ctaaagcttt agctaaaaga tagttatttt
    16741 caccattagc gactttataa gatattttat gctgttctat aaatttttga atctcatcgt
    16801 tagatttatc ttctaataaa accccaacta tattaaaatc attattatac ttttcttgta
    16861 atttattaag atgagggatt tcagcaatgc aaggggtaca ccaagtggta aaaaatacaa
    16921 acaaagttac cttatcttca tcgttgaaat ttaaaacggc attttctttt ttaactgaaa
    16981 ttgatcctcc atcaatcaaa ttaagtttaa aattcatatc atcactttga tttatacttg
    17041 cctcggtgct taaatttaca tcattttgct gcttttcttt atcattgcta caagcaacaa
    17101 acaaacaaga tattgccact agtaaaagta tttttttaat cttcattatt tatcaatcct
    17161 ttattattct ttataaaaat gctaaaatta taacatacat aagataatat ttttttaaag
    17221 gcatattaat ggaaaaaaca gattttaggg cattgcaaaa aatacgcctt ttcaaacatt
    17281 caaaactaaa tttcaaacaa gattataaaa tatttaaaga atgtcttaaa ataataaagc
    17341 tatttaaagc taaaaatatt ttaattttta ttcctttgca ttatgaacca aacttaataa
    17401 aatttcgcca tattcttaat aaaaattaca aactttttgt tccatttatg caagataaaa
    17461 gtttaaaaat tgtaaaatta agattgcctt ttattaaaaa aaggtttggg gttttagagc
    17521 ctatagattc tttttttaaa gcaaaaattg atttagctat tgtgcctgta attggcgtcg
    17581 ataaaaattt aaaaagaata ggacatgggc aaggttttta tgatagattt tttgaaaatt
    17641 taaattacaa acctcatata atatttatcc aaagtataga tgctttaagt caaaataatc
    17701 taacacaaaa gcatgatatt tcaggaaaat tatacataaa cccttataaa aaatattaca
    17761 agaaagaaag aaaaaatgat agaatcactt atcgcactta tagccgctat agtcggactc
    17821 ggtataggat atttagttgc aaaaaaaatc aatgatgcca aatatgaaat tttcgtagaa
    17881 caagccaaag ctaaagccaa agctatagaa tacgaagcgg agcttatttt aaaagatgca
    17941 aaaaattcaa ttcttaatgc agaattagaa gttaaaaaaa aatacgaaga aaaaactcac
    18001 aaatttcaaa aagattttaa tcaaaaattt gatgatcttt ctaaaaaaga acaaaaactt
    18061 cagcaagaag aagaaaaact aaaagaagat aaagaatacc tttgcaagtc acaaaaacac
    18121 attcaaaact tacaatctga tgttgataaa ttaaaaaata aatatcaaga aaaacttgac
    18181 gatgttttaa aaattttaga acattcgaca ggacttacac aaaatgaagc caaagaaatc
    18241 attcttaaaa aagtagaaga aaattctcgc gagcaaattg cacatatagt aagaaaatat
    18301 gaagaagaag caaaaaatga agctaaaaga aaagctaatt tcatcattgc tcaagctact
    18361 tctcgttttg caggtgaatt tgcagctgaa agacttatca atgttattaa cattaaaaac
    18421 gatgaactta aaggacgtat cattggtaaa gaagggcgca atgttaaaac cttggaaatg
    18481 gttttaggtg ttgatattat catcgatgat acaccaggtg ctattatagt aagttgtttt
    18541 aatctttatc gccgtgctat tgctacaaaa gttatagaac ttttagttga agatggcaga
    18601 attcaacccg cgcgcataga agaaattcac gaaaaagtgt gtaaagaatt tgatagtgcc
    18661 attctagaag aaggcgaaac catagttatg gatctaggtt taaataaaat acaccctgaa
    18721 attgtaaaac tcataggaaa actcaaatac cgagcaagct atggacaaaa cgctttagca
    18781 cattctttgg aagtggctca ccttgcagga atcattgctg ctgagtgtgg tggagatgag
    18841 aatttagcac gtcgtgcggg aattttacat gatataggaa aagcattaac ccatgatttt
    18901 gaaggatctc atgtggattt aggtgcagaa ctttgcaaac gctacaaaga gcatcctgta
    18961 gtaatcaatg ctatttacgc acatcatgga cacgaagaag ctacaagcat agaatcagca
    19021 gctgtttgtg cagcagatac tttaagtgct gcacgacctg gagctagaag agaagtgtta
    19081 gaagctttct taaaaagagt cagtgagcta gaagatatcg ctaaaagtaa agaaggaatt
    19141 aaaaatgcct atgcaatcaa tgccggaaga gaaattcgcg tcatagccaa tgctcagctt
    19201 gttaatgatg atgaaagtgt acttttagct aaggaaatag cagctgaaat tcaagaaaaa
    19261 atgcaatatc ctggtgaaat taaagtcaat gttatacgtg aacttagagc tgtagaatac
    19321 gctaaataag gtttattatg caagatatga ttgatacttt aataaaatat ggttatattg
    19381 ttttattctt ttactcttta gggggcggga tggttggaat tttagctgca ggagttttaa
    19441 gttctcaagg aaaaatggat cttagttttt gcattgctct tgcttttatt gctaatacca
    19501 taggttcaac tttgcttttt atacttggaa aatattataa aaaagacatt atgccttatt
    19561 ttaaaaaaca ccgacgcaag atagcccttg ctatgataaa aacaaaacaa catggaatta
    19621 ttttacttgt aactcaaaaa tttatttatg gtttaaaaac tttcattccc atagctgcag
    19681 gtatggcaaa atataatttt attaaatttt ttattatcaa tactctagct agtttggcat
    19741 gggctattgt tctaggtttt actgcttata cttttgggta tgttattgaa gcaatttttg
    19801 ataaactgag tttatatcct tatgctgctc ctttattttt attattttta gccggaataa
    19861 tttggcttta tttaagtaaa ttttctaaaa aataatgtct ctatggaatt ctttttctta
    19921 ctcttttaaa gaatttcatt atttattttt ctctgttgtt gttattttta tttttaatat
    19981 ccttttagaa tataataatt ttttaaactt taaaaaccaa aaacattacc ttatagacaa
    20041 cgctctatta acgcaccaat atataaaata taataaaaaa aataaaaaat actgggtttt
    20101 aaagttacaa actgaaaact tcacttttta tactacaagt tttaaggatt taaatttaag
    20161 caagaatcaa tttttaagcc ttagaattat cacccataat attaacttta aagactatct
    20221 gagtaaaagt ttttacgcac cttcttatga ttttgaaaaa ttaaaagaaa aagaatacaa
    20281 tcccattata tcttacttct taaatcaaca tacaaatgaa aagattaaag aattttatgg
    20341 tgctttattt tttgcactgc ccatatcttt agagcttaga aacgatgtaa attactacgg
    20401 tatagcacac cttatagcaa ttagcggtta tcacataggc ttacttttta gtttaatttt
    20461 ctttatttta gctccaattt atagtttttt ccaaaaaaga tattttcctt atagaaattt
    20521 acgtttagat ttaagtattt taatttttgc actactttta gcttatgctt gtttaatagg
    20581 atttgtccct tcttttgtgc gctccttgat tatggctttt tgggtttttt atctattgtg
    20641 taaaaatata aaaatcatta atttcgttac gcttttttgt agtattttat tgtgcatttc
    20701 tctttaccct agacttttat ttagtattgg atttttattt tctattttag gtgtttttta
    20761 tattttttta tatatgcatc attttgcaaa taaatttaat aatcttataa atattatttt
    20821 gcttaatatt tggacttttt ttgctatggt tttacctgtg ctttattttt ttccacttat
    20881 aagctaccaa caaattttag gtattatttt gagtggaatt tttgtaatat tttatccttt
    20941 agtattattt ttgcatctta taaactatgg agatttgctc aattttatct tagatgaatt
    21001 ttttaaattt aaaatttatg gaactaatat ccatatccca ttttggattt ttataagtta
    21061 tcttattgct tctttaatct ctgtgcgatt taaatatcta gcttttcttt gtatttttgc
    21121 gaattttatt cccttcatta tgattgtgat ttagaaaata atagagttta agcccaaaaa
    21181 gataaataat ccaagaaata taaatccaaa taaaaaagaa taaaatagta gaaaaagatc
    21241 cataaacgct agcgtatgtt ttattatata ccacgtaata tacaaataaa ttttttccta
    21301 tataccaaat agcacccgct ccaaaagata ctaaagctaa acttttaaga gttcccttat
    21361 gaacagaact tgaataagat ataaaaaata aaccccaaat aattacaaag ggtaaaattt
    21421 caaaaaaatt aaaccctatt ttataatcat ctaaagtttg ttggataaaa cctgaaatat
    21481 aaaaactaag cccaagcccc aaaggaacaa gagttaaaag agtccaataa gaactaatac
    21541 tttgccaaag tcctttaggt tcatttttag taatgcgatt gattacaaaa tcatagcctg
    21601 aaaaaaaagc taaagaagta aatgccatag caataagacc tacaataccc aaatttacac
    21661 tattttttaa aaaagtatcg atgtaggtag caacaacatc ttgttgcgtt ggtattaaaa
    21721 aagcaaaaat tacttgcttt gctttttcat aataagcttt aaaactggaa atttgcgtaa
    21781 aaacagaaaa acatacaaat aaaataggta ttaaagataa tacagtataa aaactaagcg
    21841 ctgctgcata atttaaaatt tccttatcac gcaaatttag taaaatatta aaaaaatttt
    21901 tcaccttcta aagtcccatt ttaaaaggat ttagtatatt atttggatca aaagcttttt
    21961 taatatttct cattaaattc atttcggctt cagaaaaagc taaattcata aaaggtgcct
    22021 tagagagtcc gataccatgc tctccgctta aagttcctcc aagtttcact gttaatttaa
    22081 aaatctcttc cacagcttca tagccttttt tcacctgctc tttatcattt ttatcaggaa
    22141 ccataacatt agtatgcaca tttccatccc ctgtatgtcc aaaacaagga attttaaaac
    22201 catatttttt agaaatctca tctatacctt caagcaaagt aggtagttta gaacgcggaa
    22261 ctgtaatatc ttcattaagt tttaaagttc catacatggc aatgctttga gaacaatttc
    22321 ttctagcaaa ccaaatatct gcggtttctt gttcatcttt tgctatttta aattcgctag
    22381 cgccagcttc taaaaaataa tattctaaat ttcttaaatc ctcatcaata gcctctttaa
    22441 cattaccatc cacatcagca atcaaaatag ctccagcttc tataggcaaa cctttattaa
    22501 atttgctctc aaccgctcta atgctaagat tatctaaaaa ttccatagat acaggactta
    22561 caccgctagc aagacttttg taaaccgcat tcatagcact ttttacactt ggaaaaatag
    22621 caaaagcagt ttttttaaat ttaggcaaag gtattaattt taaagtaagc tcacttaaaa
    22681 ctgccaaaga accttcacta gcgattaaaa ttcctgccaa attataacct gctacatctt
    22741 taatagtgcg tttccctgca cgaatgattt ctccgctagg caaaacagcc cttaaagcca
    22801 tcacataatc ttttgtaatg ccatattttg cagctctcat tcccccagca ttttcgctta
    22861 cattaccccc taagcttgaa tactccatgc tagcagggtc aggtgggtaa aaaagtccat
    22921 atttagccac ttctttttgt aaatgtatat taataacccc aggttgcaca acagccacta
    22981 aattttcaag atcaatttct aaaattttat tcatatgctt ttcaaaagca agcaccaccc
    23041 cgccattaac agctaaagct cctcctgtaa aaccagatcc tgagcctcga ggtatgacta
    23101 tgatattatt ttcattgcaa aattttaaaa tttgagcaat atcttcttca tttcttggaa
    23161 aaagaacccc atcaggtaaa taatgttttt ttgtcgcatc atagctataa gctcttttgt
    23221 gaatttcatc aaaataagcg ttttcttctc ctaaaaatcg tttaaaatat tgttcaaatt
    23281 cttttttcat gtttattgca ccttaggaag attaatcaaa gcatcataat acctataata
    23341 atttcctatt tcttgagagt taaaatcaaa aaaattactt ttatatccac ctatacgaga
    23401 ataaaaagga acctgaacgc tagttggctt gcttataggc acttcataaa gcttattaaa
    23461 atcttgacaa tccacaactt ctgcatgatt ttccaaagcc acaaccaaaa tgccaaccgc
    23521 attatcatca caaaattgcc taaaatctga acgcttagga gaaagagtgg ccgttctaat
    23581 taattgtgct ccaaaaatgt caatatgggt aaaatatatc tgcggaaatt ctctaacaag
    23641 ttcattataa gtttgttcat caggagcaat taccaatcct ctatcataaa gaaaatttaa
    23701 aacaacctca tcacctactt taggtaaaac atttggcaaa ggcaaagcat cttgcttaag
    23761 agctgagaaa atgctaaatt ctaattttgc caaaccattt tttttatcta taacacttgc
    23821 tctagcgatg atactttgcg aattgctaaa atgttgtact actacgccac ttgaataaag
    23881 ttttatatca tcactatctt taatataacc ataaatatca tcaactttta caagttcact
    23941 ttttataggt tttaaatcaa atccaaccgc aaagaggcta aggtttaaag ctaaaaaaca
    24001 cactatagtt ttaaacaaat ttgctcctta aataaaaatt tatagaatta taatcctttt
    24061 ttgttaagca attgtaagaa aaataaagta aaatatagct ttcaaatttc aaaattcttt
    24121 taaaaattaa ggtcatctca tgaaaaaatt attgctttta tttatttttg ttgttcaaag
    24181 ttttgcagct ttaagtgttg aagagctaac ttgggataat ggagatacct tgcttaaatt
    24241 cttacaaaga aattccatac ctatgtcgct ttattatgga cttgatagag aagatcaaga
    24301 acttgcttct gatatagcct ataaaataaa atatcaagtt ttaaaagatg aaaacaacaa
    24361 catagaacaa gttttaattc caattagtga tgatttacaa attcatatct ataaagataa
    24421 agatggacaa tacactcttg cttttactcc tgtatcttat caaaaagaag atagaatttt
    24481 acatttaacc attaaaagtt ctgcctatca agatgtctat gaggaaagtg gtagcagtac
    24541 tttagctcgt gctatggttc gtgcttttcg aggaagtata aattttcgca atatccaaaa
    24601 aggtgatgaa gtaaccctat attatgaaca aaaaagacgc atgggtaaac tttggggtga
    24661 tataaatata aaaatggcaa tggtagaaat caataaaagc gctagagaag tcttttctta
    24721 taatgatata ttctatgatc gcgatggtaa agaattagaa tcttttttac ttacaaaacc
    24781 tgtgaactac actagaattt cctctccttt tacaacagca agatatcatc ctatattaaa
    24841 acgctatcgt gctcatcttg gtatagacta tgctgcacct actggaactc ctgtgaaaag
    24901 tgctggcaaa ggagtagtaa cctttatagg cacaaaaggt ggttatggaa atgtaattca
    24961 aatcaagcat gactcaggtt atatgacttt atatgctcat cttagtcgtt ttgcaaaaat
    25021 taaaaacgga caaaaggtaa atcaaggaca agtaattgca tatgttggtt caacaggtat
    25081 gagcacaggg cctcatttgc attttggagt atatttaaat aataaagcta taaatcctgc
    25141 atctgttgta aaaatcgcca aatcagaact tagtggaaaa gcaaaagaga attttaaaca
    25201 tatcatagct gaatacgaac aggttgttaa agaagcccta gcctcgaatc aacctaatcc
    25261 cccaaaagaa gaagattttg aaaactatat agaattttaa ttactcaaca acgctttatc
    25321 ttttgcattg attaaagaat ttagaagagt tgcaagctct tctttttctt tttcactaat
    25381 ttcacaaaaa tctgcatcaa ttaattgttt caccaaagct tcatttaaca aatccccatc
    25441 gccaaattct ctagcttttt gaatgatttt tagcactctt aaatcttttc tttcatacat
    25501 tttaatcctt taaataaacc acactcacaa aacgcttagg cgttttatcg cgacgataag
    25561 aaaaaaaact ctcatcatca aaactacaaa ttccacaatc tttaatattt tcaatgccta
    25621 aattttgagc ttgaaatttc accaaggctt ttaaatcaag tttattatct tgaacaaatt
    25681 ctttaaattc ttttttagca aattctaaaa tttctccatc tatttcataa tttttagcat
    25741 aaattccagg caggataaaa agatgaaatt tattcttatc taaatgtgaa ttttgcatag
    25801 taatttgatc aacgcattct tttaggatat tttcaaagct tccttttcta cctgaatgca
    25861 aagctgctat aataccactt tcatgatata aaatcaaagg cagacaatcc gcacttaaaa
    25921 cacaaagagc gatatttttt tccttgctta taagtccatc acaactgaga ttttttaaat
    25981 tttcatcata aatgataact ttatgagaat gaatttgatc cataaaaaca catttttcaa
    26041 tatctttaaa acctaaatga gaaaataaat tctcattatg aattttagct ctaaaaacat
    26101 tataatcctt atcaaaagca caaaaaatac cgactttatc attttctaat aaagataaga
    26161 aattctttcg acttcttccc atgataatcc tttgttttta ccttgtaatt gtgcataaat
    26221 ataacgagca agtaaatcac tttctatatt gatttttcta cctacttgat agtctttaaa
    26281 aagcgtttct ttaaaggtaa taggaataat agtaagccta ataccatttt ttaaaatttc
    26341 attgatagta agacttactc catcaacagc tatacttcct ttttctgcca taaatttcat
    26401 agcttctttg ggtaaagata tatgaaaatc tactccattt tcatcttttt gaatcttttc
    26461 aagtgtgccg ataaaatcaa tatgtccttg cataagatgt ccatcgattc tatcgccata
    26521 tcttaaagca ggttctatat gaactttatc ttttaaattc tctatagcca tatgagtgcg
    26581 actttcacga gaaagctcca cttcaaaacc cgcttcataa agttttgtta cacttaaaca
    26641 agctccattt acggctatgc tatcgccaag atttgggcga tattttgctt ttaagcttaa
    26701 agtattgttt tgataagatt gaactttagc aatttctctt atgagtccat taaacatttt
    26761 ttaccttaaa aaatcttatt taataattta ttcaccgctt tatcaacttt atcgccagta
    26821 cttttagcac cgtcactcac accgccaccc actacatttt taatagaatt taacacgctt
    26881 cctgcattta aatttacttt aggattttcc gtagttcctg taatacttcc tttaaaatta
    26941 gctctatcga gtttaatatc aaaaggcaaa tttaaagccc cgcttttaga atttaaagct
    27001 cctgattgta ctaaaatata agaacgatct gcttgcatat taagattaag cttgatattt
    27061 tcttttttaa tcaaagcttt agcattagca gtgcgataaa catcattggt aatatctttt
    27121 agtgttaaaa tttttaaagc attggtaata agatttggtt ttaatttacc ctctttcata
    27181 tccaaattaa cctcgccttc ttcgcttaaa agattgtaat ttgccttcat gtccgcctta
    27241 ccttgataaa tatccataaa atccaaaccc tgagctagac tacttaaatc cactccgttt
    27301 aaatcagcaa gtaaaaggtt atctttaaat gtgctttgaa gttttccttc aaataaattt
    27361 ggactattta caacaaaatt taaattctta tcaaaaccta cctttccatt aaattctgcc
    27421 ttacctttaa gttttctatc taacaaaaag cctagttttg aaaaatc
//
LOCUS       DARBAR010000007        26929 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.007, whole genome shotgun sequence.
ACCESSION   DARBAR010000007 DARBAR010000000
VERSION     DARBAR010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26929
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.007"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..282)
                     /locus_tag="SB815_000197"
     CDS             complement(<1..282)
                     /locus_tag="SB815_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905973.1"
                     /translation="MKQEISSFWYTPRGYKGIGLMELLSIKSFIDNGYKFILYTYNLD
                     DKIFKKLDELFDDFELKDANEIVSFKNYFRDDRGSGVAAFSDYFRYNLLY"
     gene            complement(266..1090)
                     /locus_tag="SB815_000198"
     CDS             complement(266..1090)
                     /locus_tag="SB815_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG0905974.1"
                     /translation="MPQLSIIIPLFNSCNFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNMVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTLDACKI
                     ALKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEFFNQKEFLEFLSKQRHFCWSVWAKC
                     FRKDIILKSFEKIKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILWQNYQDKKKSNELVKKLCLNFKNNDFHKKLFEVLEKEEFDLQRRVDEARN"
     gene            1149..2108
                     /gene="waaF"
                     /locus_tag="SB815_000199"
     CDS             1149..2108
                     /gene="waaF"
                     /locus_tag="SB815_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HEG0905975.1"
                     /translation="MKIFIHLPTWLGDTVMASPALYTIKEHFKDAQFILYGSFVSTAL
                     FKEFPNSKIIIENKLSRYKQALSLRKELGKIDLSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKYKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLILRNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHDILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENAKLV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPEKVIEQAKNLLKNSHL"
     gene            complement(2089..2649)
                     /gene="gmhA"
                     /locus_tag="SB815_000200"
     CDS             complement(2089..2649)
                     /gene="gmhA"
                     /locus_tag="SB815_000200"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG0905976.1"
                     /translation="MINLVEKEWQEHQKIVQASEILKGQIAKVGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDESF"
     gene            complement(2646..4031)
                     /gene="rfaE1"
                     /locus_tag="SB815_000201"
     CDS             complement(2646..4031)
                     /gene="rfaE1"
                     /locus_tag="SB815_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HEG0905977.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYTNLKSLGADVFALGVVGDDKSGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDISAILLENELIALFDEKIKDFKAVVLSDYAKGVLTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFALRYSIITLSEAGIALFDEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANEIEIF
                     KACELANEAAAVVVSKIGSVSVSFDEIKNFNRVDFEKKIKSKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDVLIIGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDEDTPLELISFLKPDILVKGADYKDKLVVGADIVSRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(4024..4977)
                     /gene="rfaD"
                     /locus_tag="SB815_000202"
     CDS             complement(4024..4977)
                     /gene="rfaD"
                     /locus_tag="SB815_000202"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HEG0905978.1"
                     /translation="MRIAITGGAGFIGSQLALNLQEKHEILIVDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFEGSDQIYRDFT
                     YIKDVINANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYRPKFTLEEGIKDYLGEIKRLFEKEVNA"
     gene            complement(4978..5538)
                     /gene="gmhB"
                     /locus_tag="SB815_000203"
     CDS             complement(4978..5538)
                     /gene="gmhB"
                     /locus_tag="SB815_000203"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HEG0905979.1"
                     /translation="MFIFFLKKLYYNVFMKTKALFLDRDGVINIDKKYVYKIEDFEFC
                     DGIFELCRYFLARNYLLFIATNQSGIARGYYKESDFFKLCDYMLKEFAKQDIKIDKIY
                     HCPHLEGCECRKPKAGMLLKAKDEFDLDMKNSIFIGDNLSDMQAGLNADIGTLILVNE
                     EKKEGDFFRQFKNLKEILSFFKEKDI"
     gene            5620..5922
                     /locus_tag="SB815_000204"
     CDS             5620..5922
                     /locus_tag="SB815_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG0905980.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(5945..6151)
                     /gene="ccoS"
                     /locus_tag="SB815_000205"
     CDS             complement(5945..6151)
                     /gene="ccoS"
                     /locus_tag="SB815_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HEG0905981.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(6148..8505)
                     /locus_tag="SB815_000206"
     CDS             complement(6148..8505)
                     /locus_tag="SB815_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HEG0905982.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKIFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIENIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFDGKEFVSKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLINAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     FKEVFLDKALDLNELYNFVKLSKHPISQNIASYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEELLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIAKKLEIQNYQASCLPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            8614..9912
                     /gene="rho"
                     /locus_tag="SB815_000207"
     CDS             8614..9912
                     /gene="rho"
                     /locus_tag="SB815_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEG0905983.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            9916..11451
                     /locus_tag="SB815_000208"
     CDS             9916..11451
                     /locus_tag="SB815_000208"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEG0905984.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKTFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSTLIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQEIKQENMTNITPRITPAPIIPNLEKKIEKNAYEILLDSIYDRDFNLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGNPQIQ
                     NID"
     gene            11531..13432
                     /locus_tag="SB815_000209"
     CDS             11531..13432
                     /locus_tag="SB815_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding protein"
                     /protein_id="HEG0905985.1"
                     /translation="MQRRDFLNGMALAVVAGMTPLQLLYGKDSKIEDFTKEYYPPNLL
                     GLRGSNNKSYKYAHMLRDGDKFGFSSIKPKENYDLVIVGAGISGLAAACFYQQKFGEN
                     KKILILDNHDDFGGHARRNEIQLDEGTILSYGGSESFQSPKALYSKEVIELLKSLGVS
                     IDELAKRFDVNFYPDLKLSRGVYFSKENFGVDKVVNGNPRKVICDDIPDSKNNGKSIE
                     NFIKDFPMTSKDKRELISLFKSNKDYLKGLSKEEKEEYMAKTSYKKFLEEKVKLSQKA
                     ITFFEGMTDDFLALGIDAISCEDARISFLPGFDKLGLDPIEGEALAEMEEPYIYHCAD
                     GNATVARLMVRKLIPTVSQKGKDMDDITLAHFDYSKLDDSNNKVRLRLNSTVIHVENT
                     KNGTLISYINQGKKYRIKAKNVVMANYNNMIPYIIPSLPKEQKEALSKNVKTSLLHTK
                     VIISNWEPFIKLGVHEIYSPKMPYARTKLDYPVDMGGYHHPRDPKKPICIHMVCSPLA
                     LANIQGIDLEGLDARDRARVGRNLLFTMSFEEHEKIIRGQLQGMLGTAGFNHEKDILA
                     IVVNRWGHCYSYTENSLYDDPKIAEQTRLIARKPFGNIVIANSDSDWSAYMHSAIDQA
                     YRAINEIKA"
     gene            complement(13422..15527)
                     /gene="copA"
                     /locus_tag="SB815_000210"
     CDS             complement(13422..15527)
                     /gene="copA"
                     /locus_tag="SB815_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HEG0905986.1"
                     /translation="MEELRIKIGKMTCVNCSNAIEKACKKIDGVKDASVSYVNSSGVF
                     LLEDQEKRKDIIAKIQNLGFEILEDEQNLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVRSSFSQNIQMALSFFGIFYCGRDFFSHAFLGLKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEIPSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGGVVLNGALRIKANKKAMDSTLEQIKNLVFEAGNIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWAAKTDLNTAFLHACAVLLISCPCALGLATPIALVVASTNAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKEKLSVFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDQICDLKGEGRVIVGSGIKYKEDSDIYLAGSAQFLHENEIDTKESDIFFDSFKEYVR
                     VYFAKNKKCLGGVLLSNALKDEAKELVLNLKEQNLKTFILSGDHVKNVEKIAKELQID
                     EFYAQLKSEEKLQIIQKFEKTLFVGDGINDAAALSAASVSISFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRSIIKLNLFWAFIYNVLCIPIAAGFVPFIALSPHIAALAM
                     CFSSVTVVFNSLRLRKSKP"
     gene            complement(15527..15721)
                     /locus_tag="SB815_000211"
     CDS             complement(15527..15721)
                     /locus_tag="SB815_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HEG0905987.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLDQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVERL"
     gene            complement(15711..16661)
                     /gene="czcD"
                     /locus_tag="SB815_000212"
     CDS             complement(15711..16661)
                     /gene="czcD"
                     /locus_tag="SB815_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HEG0905988.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSMDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIVLSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSGIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(16736..16999)
                     /locus_tag="SB815_000213"
     CDS             complement(16736..16999)
                     /locus_tag="SB815_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEG0905989.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(17069..17563)
                     /locus_tag="SB815_000214"
     CDS             complement(17069..17563)
                     /locus_tag="SB815_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEG0905990.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIALAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(17560..18336)
                     /locus_tag="SB815_000215"
     CDS             complement(17560..18336)
                     /locus_tag="SB815_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HEG0905991.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KVKVVFEQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            18403..19329
                     /locus_tag="SB815_000216"
     CDS             18403..19329
                     /locus_tag="SB815_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEG0905992.1"
                     /translation="MAKIGIVGLGYVGAANAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQKLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCVNLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(19326..19928)
                     /locus_tag="SB815_000217"
     CDS             complement(19326..19928)
                     /locus_tag="SB815_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG0905993.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEVKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(20008..20235)
                     /locus_tag="SB815_000218"
     CDS             complement(20008..20235)
                     /locus_tag="SB815_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0905994.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAILKECMIARAADNPNQVSVAGK"
     gene            complement(20246..21694)
                     /locus_tag="SB815_000219"
     CDS             complement(20246..21694)
                     /locus_tag="SB815_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HEG0905995.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAEI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRSSGP
                     VLYVDRAYLDYYITPEWIATIGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLILFNIAYLSDFALPLSNGSIALPNGSNKPATILDDDGVVNLGDLTIANLHFENY
                     KAFGTNFNYFISLGYSHGNNNQLTLPLSTILQQQGYNGKFNEEDGYAVHVGGRYDFTK
                     ALKVGYEFFWGSRYWYTMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTNI
                     QNIWGNRGLPFGGAKKDKARADNIMLMYNVKF"
     gene            complement(21858..22340)
                     /locus_tag="SB815_000220"
     CDS             complement(21858..22340)
                     /locus_tag="SB815_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG0905996.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGIGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(22350..23057)
                     /locus_tag="SB815_000221"
     CDS             complement(22350..23057)
                     /locus_tag="SB815_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEG0905997.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIEAKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            23166..23507
                     /locus_tag="SB815_000222"
     CDS             23166..23507
                     /locus_tag="SB815_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEG0905998.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIILSIIG
                     IIMINIGEVKE"
     gene            23507..23815
                     /locus_tag="SB815_000223"
     CDS             23507..23815
                     /locus_tag="SB815_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG0905999.1"
                     /translation="MYIFIIILSALLDIVANLLLKKSDGFKHKIWGLAAIANAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(23833..25425)
                     /locus_tag="SB815_000224"
     CDS             complement(23833..25425)
                     /locus_tag="SB815_000224"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEG0906000.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFESVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFDTEYYVNDAGNQIYLL
                     GLSILLSVKENTLHENVEYPEQYYKGEYIADLVKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDNYVSERSYYDALNTTLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAILNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(25437..25676)
                     /locus_tag="SB815_000225"
     CDS             complement(25437..25676)
                     /locus_tag="SB815_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEG0906001.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            complement(25678..26301)
                     /gene="gmk"
                     /locus_tag="SB815_000226"
     CDS             complement(25678..26301)
                     /gene="gmk"
                     /locus_tag="SB815_000226"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEG0906002.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKP
                     REGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(26298..>26929)
                     /locus_tag="SB815_000227"
     CDS             complement(26298..>26929)
                     /locus_tag="SB815_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906003.1"
                     /translation="NKELQANISDFDDLPVVEEQEKEMDFDDLPEDAEFLGQAKDNEE
                     SEEVLEEFAPVVEEDVQDEMDDFTSNLSTQDQIKEELAQLDELDYGIDSDNSSKVLED
                     FKDEPILDDKELGTNEEEVVVPNLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVT
                     KDDNSEEIVNELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
BASE COUNT         9418 a         4886 c         3557 g         9068 t
ORIGIN      
        1 ataaagtaaa ttgtatctaa aataatcact aaacgctgct actccagatc ccctatcgtc
       61 tctaaaataa tttttaaaag aaacaatttc atttgcatct tttaattcaa aatcatcaaa
      121 taattcatct aattttttaa aaattttatc atctaaatta taagtataaa gtataaattt
      181 ataaccatta tctataaaag attttataga taaaagctcc attaaaccaa tacctttata
      241 acctctaggt gtataccaaa aactactaat ttcttgcttc atcaaccctt ctttgtaaat
      301 caaattcttc tttctctaaa acctcaaaca acttcttatg aaaatcatta tttttaaagt
      361 ttaaacaaag cttttttaca agttcattgc ttttcttttt atcttgataa ttctgccata
      421 aaatttcttt atttttgttt tcatatcttc catttggatt aaattcataa tgataaatgc
      481 aagttttaaa aacagctatt ttctcacaaa acataaaata aacataacaa aaaagcacat
      541 cttcgccata actcaaacgc tcatctattt taattttttc aaaacttttt aagataatat
      601 cttttctaaa acacttagcc caaaccgacc agcaaaaatg cctttgtttg cttagaaatt
      661 ctaaaaattc tttttgatta aaaaactcat cttgtttaaa acgataaaat tgcttggttt
      721 ttaccctatg tacaaaagca tcaaagcaaa gcaaatcaaa accttttttc atctctttaa
      781 gcgctatttt acaagcatca agagttaaaa aatcatcact atctaaaaac attataaaat
      841 cagaactaga atgcaaaact cccaaatttc tacttgcaaa agtgcccaaa ttttcttcat
      901 tttgaaagat ttttatcctt ggatcttttt tagcaaattc taaaaccata tttaaactat
      961 tatctttact tttatcatcg ataatcaaaa tttcaatatc ttttaaagtc tgatttatac
     1021 aactttgcaa agctcttgag ataaaattgc aagaattaaa aagcgggatt atgatagaaa
     1081 gttgtggcat atttttccta aattttgtta aaataataaa aacaattcta tcaaagttta
     1141 ggaaatttat gaaaattttt atacatcttc ccacctggtt aggcgatacg gtaatggctt
     1201 cacctgcttt atacactata aaagaacatt ttaaagatgc tcagtttatc ctttatggtt
     1261 cttttgtttc tacagcactt tttaaagaat ttcctaattc taaaatcatc atagaaaata
     1321 aactatcccg ttataaacaa gctctatctt tacgcaaaga acttggtaaa atcgatctta
     1381 gctttgcttt tagatctgcg ttctcttcta agattatctt gcatatcctt aaaacaaaac
     1441 aaagatattt ttttgacaaa aacaagtaca aagaagaaca tcaagtttta aaataccttt
     1501 attttataga aaattcactt agtataaaag ctcattttaa ggacttaaag cttcccttta
     1561 agctaaaatt tcaaaaccct cttatcttaa gaaatggtaa aaaaattcta ggactcaacc
     1621 ctggtgcaag ctttggaagt gcaaaaagat gggatgcgag ttattttgct aaagtggctt
     1681 taaatttcag ccaaagtcat gatattttaa tctttggtgc aggaaaagcc gaacaagaac
     1741 tttgtaatga aatttatcaa attttaaaag aacaaaacat aaaagtaaaa aatctttgca
     1801 ataaaaccac catcaaaacc ctttgtcaaa atatcgcttt ttgcgatctt ttcatcacaa
     1861 atgacagtgg acctatgcac ctaagtgcgg tttataaggt aaaaaccgta gctatttttg
     1921 gccctacgaa atttactcaa acttcacctt ggcaaaatga aaatgcaaaa ttagtgcatt
     1981 tagatctagc ttgtatgcct tgtatgcaaa aaacctgccc tttaaaacac cacaaatgca
     2041 tgaaagatct aaagcctgaa aaagtgatag aacaggctaa aaatttactt aaaaactctc
     2101 atctatgatc tgacaaagtg tgtgtatgat taaaatgtgc atttcttgaa ttctagctgt
     2161 atcatcgctt ggcacaacaa gattatgatc acaaagctta ttcatcattc caccaccttt
     2221 tccgctaagc cctagacaaa gcatattaag ctcttttgct ttttttaaag cttctaaaac
     2281 attagggctt tttccgctcg ttgaaatacc gattaaaaca tccttttcat tccctaaagc
     2341 ttccacttgt cttgaaaaaa caaactcaaa accatagtca tttcctatgg cactaagtgc
     2401 tgaagtatcg gttgtaagtg ctatgcctgc taaagccttg cgttcttttt tataacgccc
     2461 gctaagttca gccgcaaaat gctgagcatc agccgcactt ccaccgtttc cgcaaattaa
     2521 aattttacca ccttttttaa gacactcaca caaaagctca cctactttag cgatttgtcc
     2581 ttttaaaatt tcgcttgctt gaacaatttt ttgatgttct tgccattctt tttccactaa
     2641 atttatcatt ttttatcctt aatcttttct atgatcttac ttgtactaaa tccttcttca
     2701 aagtcgatta attcaaccct tgaaacgata tctgcaccta caacaagttt atctttataa
     2761 tcagctcctt taaccaaaat atcaggcttt aaaaagctta taagttctaa aggcgtgtct
     2821 tcatcaaaaa tcactacaaa atcaacaaaa taaaaagctg ccaacataca agctctttga
     2881 aattctgaat ttacaggacg actctcacct ttgagtcttt tcacactcgc atctgagttc
     2941 aaacctataa tcaaaacatc gcccaatctt ttagctttct caaggtattt tatatgtcca
     3001 aaatgcacga tatcaaaaca accatttgta aaaacgatct ttttatcatt ttgttttaaa
     3061 agcgttaaaa gttcttcttt gcttttgatt tttttctcaa aatccacacg attaaaattc
     3121 ttaatctcat caaaactcac actcacgcta cctattttac ttaccacaac agctgcagct
     3181 tcattagcaa gttcgcaagc tttaaaaatt tcaatttcat ttgccaaaca aaaagccaaa
     3241 actgcgatca cactatcgcc cgcccctgtt acatcataaa cttctaaagc tttagcaggt
     3301 gcaattttta aaccctcatc aaaaagtgcg atccccgctt ctgaaagagt gatgatagaa
     3361 taacgcaaag caaaatcttc ttttaatttt ttaatccctt tttctaaatt ttcaccctct
     3421 aaattttcaa atttcaaagc ctctaaagct tcttttttat taggcgtgag taaggttgca
     3481 ccgctatatt tactaaaatc actgccttta ggatcaacta aaacaggaat atttaaagcc
     3541 ttagcttttt ttatcacagc cttacaaact ttaggggtta aaacaccttt ggcataatcg
     3601 cttaaaacca cagccttaaa gtctttaatc ttttcatcaa acaaagcaat aagttcattt
     3661 tcaagcaaaa ttgcacttat gtcttcttca tctagtctta aaacctgctg attgtgtgcc
     3721 ataatgcgat ttttaaaagg ggttttgcgt cctttttgga tcaaaaattc tccttttaaa
     3781 ttttcttgta aaaatttccc actcttatca tcacccacaa caccgagcgc aaaaacatca
     3841 gctcccaagc tttttaaatt tgtataaaca tttgcagccc cgcctaatct tttatcttct
     3901 ttaagggttt tagctaccaa aacaggggct tcaggactga tacgcgaaca atcacaccaa
     3961 gtgtaattat ccaccataaa atcccctata attaaaattt taggtttttg ctgacttaaa
     4021 aactcaagca tttacttcct tttcaaaaag tctttttatc tcgcctaaat aatcttttat
     4081 accctcttct aaagtgaatt ttggccgata atcccaagtt tgatctagtt ttgcctcggt
     4141 atgaaattga taagatttta cataaggatt tgggatatat tcgcaaggca aatcagtctt
     4201 taactctttt tgcaaaatat caactatatc ttgaaaagtt cttgctttac cgctgcctac
     4261 attataaacc ccacattttg agtcaagggc gattaaattg gcattaataa catctttaat
     4321 ataagtaaaa tctctataaa tttgatcact tccttcaaac aagcgtggat tttttcctgc
     4381 taaaatttga tggccaaatt gtaaaaccat agaagcggtt ttgtttttgt aaaattcgcc
     4441 ttttccataa acattaaaat atctaagtcc tactaaatgg gctttatcgt agtatttttt
     4501 cgctaactta tccatcatca attttgaaaa agcataagga ttttttggtt cttcatcttt
     4561 acctacggtt tgcggacttt ttgcatcgcc ataaactgaa gctgaacttg cataaataag
     4621 ctttgcatta agatctatgc taagttctat aaaatcttta aaagtattta aattggtttg
     4681 taaaacctta gtttgatcaa aaaccgtagt gtctgaaatt gctgcttgat gaaaaataat
     4741 ctctggctta aaatcttcaa tcttttttaa aactttttca tcattaatat cgcctgcaaa
     4801 aagttctcca tcaaattcaa gtaaattttt aaaatgccca aaactttgca aatttccatt
     4861 ttcaaaagtc gcactactac gcattttatc gacgattaaa atttcatgtt tttcttgcaa
     4921 atttaaagcc agttgcgaac ctataaaccc tgcgccacct gtgattgcta ttctcattta
     4981 aatgtccttt tctttaaaaa agctcaaaat ttcttttaaa tttttaaatt gtctaaaaaa
     5041 atcaccttct tttttttctt cattcactaa aatcaaagtg ccaatatcag catttaatcc
     5101 tgcttgcata tcgcttagat tatctccgat aaagatagaa tttttcatat ctaaatcaaa
     5161 ctcatctttt gcttttaaaa gcattcctgc tttaggtttg cgacactcac aaccttctaa
     5221 atgcggacaa tgataaattt tatcaatttt tatatcttgc ttggcaaatt ctttaagcat
     5281 ataatcacaa agcttaaaaa aatcactttc tttataatat cctcttgcaa tgcctgattg
     5341 gtttgtcgct ataaaaagca aataatttct agctaaaaaa tatctacaaa gttcaaaaat
     5401 tccatcacaa aattcgaaat cttctatttt ataaacatat tttttatcta tattaatcac
     5461 accgtctcta tctaaaaata atgcttttgt tttcataaaa acattataat atagcttttt
     5521 taaaaagaaa ataaacatta tctttaattt cttaagattt ttattaaaaa taaagatata
     5581 taatacctag caatctaatt tttactaagg agaaaacaaa tgaaaaaatt attagtagtt
     5641 tctgctttgg catgtcttgg tgtttctgct tttgctgcag atggtgctac actttttaaa
     5701 aaatgcgcag tatgccatgg tgcaaatgct gacaaagttt acttaaacaa agttccagct
     5761 ttaaaaactc tttcttctgc tgaaagactt caatacatga aagaatattc agaaggtaaa
     5821 agaaatgctt atggtcaagg tgcgatcatg aaacttaacc ttaaaggttt aactgaagaa
     5881 gattttaaag ctatcgaagc tcatattgaa actttaaaat aatttctaaa aaaggctttt
     5941 ctttttaaga aagccttttt ttatccaaag cttctttttt acgtctttct aattctatag
     6001 catcacgtaa agaatcctca tcatcattta aagtagtaaa tttataatca tcatcaaatt
     6061 gcttattttt aatcccccaa agcaaagttg ccaaaatgat aaaaaacgct aagatagaaa
     6121 ctcctatcat catcatgatt atactattca ttctttaatc cttaaagcat ttaaaacgac
     6181 tattatacta ctaaaagaca tagaaatagc agcaaataaa ggatttatca tacccaaaaa
     6241 agccaaaggt atggtgcaag cattataaaa caaagaaaaa gcaagatttt gcttgataat
     6301 tttaaaggtg tttttagata atttgatggc tttttttaaa gaaagcaagt catttttcaa
     6361 aagcaaaaca tcactacttt ctatagctag atcacttcct tctcttaaag tcattgaaac
     6421 acttgcgtat tttaaagcta gtgcatcatt taccccatca cctacaaata aaactttgta
     6481 atttttactt aaattttcta tagttttcat cttatcttca ggcaaacaag aagcttgata
     6541 attttgaatt tctaactttt tagcgatttt ttccactgct ttttgatgat cgccactgag
     6601 tatcattaat tctttctttt cttttttaag ataagcgata agctcttttg caccttctct
     6661 taaaacacta tcaaactcaa aaaaagctaa aattttacct tccttggcaa aaataaaatg
     6721 cgtattatca aattctttag ccacaatacc cttttcttgc aaaaatttag aacttccgcc
     6781 taaaagcaac tcttcattta actcagcact taaaccttta gcttgaatac tcgaatgctt
     6841 tttaaaatcc aaatttaaat ccttagctcc tttttgcttt aaatacgacg caatattttg
     6901 agatatagga tgtttagaaa gttttacaaa attataaagc tcatttaaat caagcgcttt
     6961 atctaaaaaa acctctttaa attcaagctc tattttggtt aaaatacccg ttttatcaaa
     7021 caccacacaa tcacatttgc ttaaatcttc tatcacgcta gaacttttaa acaaaatatg
     7081 ttttttcaaa gctctaccta aagctacaag attgctcacg ggcgttgcta aagccaaagc
     7141 acaaggacaa gcgataatca aaactgcaat cgcattaatt aaagaaattt caaaactctc
     7201 ttccttataa aaaaaccaaa aagcaaaaca aataaaagca atcaataaaa ccgttctaga
     7261 aaaataagcc aaaagactat taaccaaact ttcaagtttt gcttttttag agcttgcaag
     7321 ttctaaaagc tggataattt gactgagttt tgaatctttg taaagctttg ttgcttcata
     7381 ctccacactt ccatcaagca ctatacaagc tgaaaaaatt tcatcttctt tttgtatgag
     7441 ttttggggta ttttctccat ttaaagaaga agtatctacg ctcatttcac cacttttaca
     7501 aatcccatcg attaaaattt tatctccagt tttaagcaaa attctatccc ccaaacaaac
     7561 cttttgcact tctttagaga caaattcttt accatcaaaa accaaaactt cattttgcaa
     7621 aaaatcatta agcccatcta tagtatctaa agcacgcttt ttgctaaaca tctcaagata
     7681 tttacctata aaaacaaagc aaattatcat cgccacagag tcaaaataca cttcccctac
     7741 cctaaaaaac atggcccata aagaataaac ataagccaaa ctcgctccgc taatcaccaa
     7801 tacatccata tttaaactat gcatttttaa agttttaaaa gcacttttat aaaaatgaga
     7861 tcccgtataa aaaagcacag gagaacaaag gataaattca gcaaaattta aaatatcctt
     7921 agtgtcctta tccataccgc taaaaaatcc tgcgtatttt gccactgcta tccacatgat
     7981 attcatcaca caagctatag ccacaacaag cttagaataa aattcccttt ttagtaaatc
     8041 cgcttttttt gaagccttgc tcgcatcata agcactcgct ttatagccta tgttttcaat
     8101 aagtcttaaa atttgcacca aagaaatgct ttgttcatca aaaacaatgc gtgctttatg
     8161 gtttaaatga ttaatatcaa gttctaaaat tccttcttgt ttggttaaaa ttttctcatt
     8221 aagccacaca caagctgcac attctatacc gtgtatcatg agataaattt cactaaatcc
     8281 ttctttggtt ttagtgataa actcatcata atttttcatt tcattttgaa aatttacagg
     8341 gcttaaagtt tgatttccaa gcttttcata aaactcatct aatccacttt catgcaaaat
     8401 ttcccaaacg ctctcacaac ctttacaaca aaaaatttta cccttatact ctatcatttg
     8461 ggcttgttta taatcaagtt tgcaatgttc acatttcata atcattcttt aaaaaaatat
     8521 tttttataat tataaacaaa tttgacaaaa agtgcatttt tttattaaaa tcacatttta
     8581 caaaaattat tctgctaaat cttacgagga cttatggaaa aagaaaaaaa acaacatcaa
     8641 agaacccacg ttccagtgga aggttataaa atcgaagaat taaaattatt agatttagaa
     8701 aatctagtta aaatcgctaa tgaatgtgaa atcgaaaacc caagagaatt tcgccgccaa
     8761 gaacttattt ttgaaatttt aaaagcacaa acaaaaaaag gcggttttat actttttaca
     8821 gggattttag aaatttcttc cgaaggttat ggctttttaa gaggtatgga ctccaatctt
     8881 agtgatagcg ttaatgacgc ttatgtttca aactcacaaa ttaaaaaatt tgctctgcgt
     8941 gtaggcgata tcgttacagg acaagttaga gaaccaaaag atcaagaaaa atactacgct
     9001 cttttaaaaa tcgaagcgat caattatctg cctttacaag aagccaaaga aagacctttg
     9061 tttgataact taacccctat ttttccaaca gaaaaaatca aactcgaata cgatgcgatg
     9121 aagcttacag gtcgtgtttt ggatcttttt actcctatag gaaaaggaca acgcgggctt
     9181 atcgttgctc caccacgcac aggtaaaaca gagcttatga aagaacttgc tactgctatt
     9241 gcaaaaaacc acccagaaat gcatttaatc gtacttttag tcgatgaaag gcctgaagaa
     9301 gttaccgata tgcaaagatg tgtaaaaggc gaagttttta gttctacttt tgatttacct
     9361 gcttataatc atgtgcgtgt agctgaactc gtgatagaaa aagccaaaag aatggtagaa
     9421 acaggcaaag atgttatcat cttgcttgat agtatcacaa gactggcacg tgcttataac
     9481 accgcaactc caagcagcgg aaaagtccta agcggcgggg tggatgctaa tgccctacac
     9541 aaaccaaaac gcttctttgg tgcagctaga aatatagaaa atggaggctc tttaactata
     9601 gttgctacag ctttaattga tacaggttca agaatggatg atgtgatttt tgaagaattt
     9661 aaaggcacag gaaatagcga aatagttctt gatagaaata tcgccgatag aagaatttat
     9721 cctgcgatta atatcatcaa atcaggaaca agaaaagaag aattactcca aggcgtagca
     9781 aatcttcaaa aaatttgggc gatccgttca gcgatttctc aaatggatga tgttgaagcg
     9841 ttgaaatttt tatattctaa aatgcttaaa accaaagaca atgtagaact tttatctata
     9901 atgaacgagt aaaaaatgct tcaagcccta gcgattaaat acagaccaaa aacttttgat
     9961 gaacttatag gacaaaagac agttagcgta agtttaaaat acgccctaaa tcataatcgc
    10021 ttagctcatg cttatctttt ttcaggactt agaggaagtg gaaaaacttc aagtgctaga
    10081 attttttctc gtgctttagt ttgcgaacaa ggaccaagtg atactccatg tggcacttgc
    10141 aaacactgtc ttgcagcact tgaaggcaaa catatagaca ttatagaaat ggatgctgca
    10201 agcaaccgtg ggcttgaaga tatacaagcc ttaatcgaac aaaccaaata caccccttct
    10261 atggcaagat ttaaaatttt catcattgat gaagtacata tgcttacccc acaggctgca
    10321 aatgcgcttt taaaaacctt agaagaaccc ccaagttatg ttaaatttat acttgcaacc
    10381 acagatcctt taaaacttcc agctactgtg ctttcaagaa cacaacattt tcgctttaaa
    10441 caaattccac agagtgaaat tttaaatcat cttaaagaaa ttttacttaa agaaaatgtt
    10501 aaatttgaag aagaagcttt aaaatttata gcaagaagcg gcaatggatc tttaagagat
    10561 actttaacct tgcttgacca agctattatt ttttgtcaaa atgaaatcag cattagtaaa
    10621 attacagata tgttaggctt tttagatcct caaaaaatca aaacctttta tcaggctatc
    10681 ttaacaaaag acaaggaaaa agtttttgcg tatttagagg aattacaaga ctatgaagcc
    10741 tcaagcgtga ttgatgaaat gcttttttat ttaaaagaaa gtttttttgc aaaaagtaca
    10801 gaattttcta ctttaattta tgaaagattt ttccgtattt tatcaaaagc taagaatatg
    10861 ctttgcgatg atgatggctt tacgctttgt gttatggctt ttatgatgat ggaagcaagt
    10921 catttaaaag aaattgacgc acaaatccaa gaaatcaaac aagaaaatat gacaaatatt
    10981 acacctagga tcacacctgc tcctatcata cctaatcttg agaaaaaaat agaaaaaaat
    11041 gcttatgaaa tcttgcttga tagtatttat gatagggatt ttaatcttgc agaatgcttt
    11101 aaacaaagca caaaatttat tagttttgaa aacaatactt taaatataag ctcaaacgca
    11161 caaggacaaa atcgcgatac actcaataaa ggttttaaac tcatacaaga actttttaaa
    11221 gctaaatttg gggaaaatgc aaaaattaat gtgcaaaaag cactaacaat tgatgaaaat
    11281 aagcttcaat ccttaactca agaattacca aacaatgaaa ataaaaacat agatattcaa
    11341 agttctatta atatgcttaa agaaggggcc aaaaaatttg acccacaaga agatcttaaa
    11401 gaggctctta aagattgctt tggcaatcct caaatccaaa atatagatta agatattgct
    11461 taataataat aatataagta atctttagct acaatatttt tttataaatt atttagaaag
    11521 aagaataaaa atgcaaagaa gagactttct taatggcatg gccttagctg tcgttgcagg
    11581 catgacaccc ttacaattac tctatggaaa agatagtaaa attgaagact ttacaaaaga
    11641 atactatcct cccaatctac ttggattaag aggtagtaat aataaaagct ataaatacgc
    11701 tcacatgtta agagatggag ataaatttgg ttttagcagt ataaaaccta aagaaaatta
    11761 tgatttagta atcgttggag ctggaatcag tggactagct gcagcttgtt tttatcaaca
    11821 aaaatttggg gaaaataaaa aaattttaat tcttgacaat catgatgatt ttggaggaca
    11881 tgctagacgc aatgaaatac aacttgatga aggaaccatt ttaagttacg gaggaagtga
    11941 aagttttcaa tccccaaaag cactttattc taaagaagta atcgaactct taaaatcact
    12001 tggagtcagt atagatgaat tagcaaaacg atttgatgta aatttttacc cagatttaaa
    12061 attaagcaga ggggtatatt tttcaaaaga aaattttggt gttgataaag ttgtcaatgg
    12121 aaatcctaga aaagttattt gtgatgatat cccagattct aaaaataatg gaaaaagtat
    12181 tgaaaatttt attaaagatt ttcctatgac ttctaaagat aaaagagagt taatatccct
    12241 ttttaaaagc aataaagact atctcaaagg tttaagcaaa gaggaaaaag aagaatatat
    12301 ggctaaaaca agttataaaa aattcttaga agaaaaagta aaattatccc aaaaagctat
    12361 aacatttttc gagggaatga cggatgattt tttagcttta ggtatagatg caatctcttg
    12421 tgaggatgca agaatttctt ttttacctgg gtttgataaa ttaggacttg atcctatcga
    12481 aggagaagct ttggccgaaa tggaagaacc ttacatttat cattgcgccg atggaaatgc
    12541 tacagtagca agattaatgg taagaaagct gattcctaca gtgtcacaaa aaggtaaaga
    12601 tatggacgat atcaccttag ctcattttga ctactcaaaa cttgatgact ctaataataa
    12661 agttcgttta cgattaaata gtactgttat tcatgtagaa aatacaaaaa atggaacctt
    12721 aataagctat atcaatcaag gaaaaaaata tagaattaaa gcaaaaaatg ttgtaatggc
    12781 taattataac aatatgattc cttatattat ccctagttta cctaaagaac aaaaagaagc
    12841 cttaagtaaa aatgtaaaaa catctctact tcacaccaaa gtaattataa gcaattggga
    12901 accatttatt aaactagggg ttcatgaaat ttattcacca aaaatgcctt acgctagaac
    12961 aaaacttgat tatccggttg atatgggtgg ctatcatcat ccaagagatc caaaaaaacc
    13021 tatatgtatt catatggttt gctctccttt agctctagcc aatattcaag gtattgatct
    13081 tgaagggctt gatgcaagag atagagccag agtaggtaga aatctattgt ttaccatgag
    13141 ttttgaagaa catgaaaaaa tcattagggg gcagcttcaa ggaatgttgg gaactgcagg
    13201 ttttaaccac gaaaaagata tattagcaat tgttgtaaat cgctggggac attgttactc
    13261 ctatacagaa aatagtcttt atgatgatcc taaaattgca gagcaaacca ggcttatagc
    13321 tagaaaacct tttggcaata ttgttatagc taattcagat tcagattggt cagcttatat
    13381 gcattcagct atcgaccaag cttatcgcgc tattaatgag atcaaggctt agattttcta
    13441 agccttaaag aattaaacac tacagtaaca gaactaaaac acattgcaag tgctgctata
    13501 tgaggactta aagcgataaa aggtacaaat cctgctgcga tgggaatgca aagtacatta
    13561 taaataaaag cccaaaaaag atttagctta ataatactgc gtgttttttt agcaagctta
    13621 aagcatttaa aaatagctga taaatcatct tttatcaaga taaaatcccc tgtttttttt
    13681 gcaagttcat ttgcctttga aaaacttata ctcacacttg cagcagataa agctgccgca
    13741 tcattgatcc catctcctac aaaaagagtt ttttcaaatt tttgaatgat ttgtagtttt
    13801 tcttcactct taagttgagc ataaaattcg tctatttgta attctttggc tattttttct
    13861 acatttttta catgatcgcc gcttaaaata aaagttttaa gattttgctc tttcaaattt
    13921 aacacaagct ctttagcctc atcttttaaa gcattactta ataaaacacc gcctaaacac
    13981 tttttattct tagcaaaata caccctaaca tattctttaa aagagtcaaa aaagatatca
    14041 ctttcttttg tatcaatttc attttcgtgc aaaaactgcg cactgcctgc aagataaata
    14101 tcactatctt ctttatattt tatgccagaa cccacaatca ctcttccctc accctttaaa
    14161 tcacaaattt gatctttatg taaagcctta gctataggat gagagcttaa actttcaatt
    14221 tgacataatt tatcaaaatc atctttagaa agattgtgtt taaaaacact caatttttcc
    14281 tttgttaatg tacccgtttt atcaaaaaaa gcatacttaa ctaaggctaa tttttctaaa
    14341 gcagcaggat ttttaataag aatgaaattt tttgccgcat ttgtgcttgc cacaaccaaa
    14401 gctataggtg ttgcaagccc taaagcacaa ggacaagaga tcaaaagcac agcacaagcg
    14461 tgtaaaaaag ccgtatttaa atctgttttt gccgcccaaa aaacaaaaac taaaaaagca
    14521 aaaaatatta taccccctac aaagtattta gaaatttgat ctgctaaatt tgccaaagga
    14581 cttttgatat ttcctgcttc aaaaactaga tttttgattt gttctaaagt gctatccata
    14641 gcctttttat ttgccttaat ccttaaagca ccatttaaaa ccactcctcc tgcttgaact
    14701 tcatcgcctt ctttttttaa aacaggtaaa aactccccat ttaaaaaact catatcaagc
    14761 tctgcacttc ctaaaagcac cactccatct gcgacaatgc tttctccttc ttttaccaaa
    14821 agcacatcac cacttttgac aaaagaactt ggaatttctt tgatactttc atcttcaagc
    14881 aaaatttttg tcttttttgt gtctatattt tctaaaattc tttgataatc ttgtgcttta
    14941 aatttggcct tactttcaag atattttcct aaaagcacaa aagaaataat catcattgca
    15001 ccgctaaaat acaaatcttc ttctttaaaa atttgcaaat acaccaaaaa agaatacaca
    15061 aaagcactca aagtccctaa agctacaagg gtattcatat ctaaattttt gcttttaagt
    15121 cccaaaaaag catgagaaaa aaagtctctc ccacaataaa atatcccaaa aaaactcaaa
    15181 gccatttgaa tattttgcga aaaagaactt ctaacaaaca tttcaaaata cataataatc
    15241 acactcaaaa ctatacttaa gagcaaattt tttcttaatt ctaagtgttt ttttgccttg
    15301 tatgcgttca agttttgttc atcttctaaa atttcaaagc ctaaattttg aatttttgcg
    15361 atgatatctt tgcgtttttc ttgatcttca agtaaaaaaa ccccgctaga attcacataa
    15421 gaaacgctag catctttaac accatcaatt tttttacaag ctttttctat agcattagaa
    15481 caattaacgc aagtcatttt gcctattttt atacgcaatt cttccattat aaacgctcta
    15541 cgatctcaaa acctaaatct tgaaattctt ttgtaaaatt tgatacttga ttttcttcta
    15601 aatttaaact taaaattttt tgatccaaat ccacttctat atttccaaat tcatcttcga
    15661 gagaattttt gatcaaattt acacaattca tgcaattaac attttttact ttaaatttca
    15721 ttttcactcc ttataggttg tatggtaata tgcccgattt caaattcatg caacaactta
    15781 tgagataaat cctgagatag tttttcaaat tcctttagat tgcaaactct tacttttaaa
    15841 tgcatagagg ctactagcat tttattagtg atttgagtga tatgcaaatc caccacctca
    15901 tccacgctag gatttaaaag caaaacttgt cttacttttt ctatatccac aggagaactt
    15961 tcaagcaaga cattagcgct ttgtttaagt aagataatcg cccatcttaa aagcaagatt
    16021 gataatacaa tagctaaaat cgtatctata taaacaatac cgctaaaata caccacgatc
    16081 ccacctataa ttaccgctaa agaacccaat aaatcgctca tcatatgcaa aaaagcggac
    16141 ttcatattga cattttctaa atttgcaccc ttaaacatca tcaaagcatt aatcccattt
    16201 accaaaaagc ccaaaatagc tacaattatc atggttttag cgtcaatttc ttttggatta
    16261 ataaattttt ctatagcctc ataaatgata aataaagccg ataaaacaat ggttaaagca
    16321 ttgataaaag ccactaaaac ttcaagacga aaatacccaa aggtcttttg atgatcttgc
    16381 catttttcta cagctataat ggctaaaaaa ctaagagcta aggcaaaaac atcagaaaac
    16441 atatgcaaag tatcgcttaa aagtgctaaa gaatttgaaa ggattgaata aataaattgc
    16501 acaagcatca tagaaaaagt cattaaaaga gaaattttta aaatcttttt atccatactc
    16561 cttgcatcag catgggaatg atgatgttca tgagaatgtt cttcgtgatt atgatgacaa
    16621 gatttgttag ctaaaggctc gtgtgataaa aatttataca tcttatatcc tttttgcttg
    16681 acattttaag atattaagtt aaaaaggata taaatttttg ttatttttat aaaaattaaa
    16741 agtcaaaaag ctcgcctagc caactttctt tctttttctt tttatagtag tcattgtgct
    16801 gatgataagc tgagtcatta tatcttgact cttgtcttgg agcttggtta aaatttgctg
    16861 tattagggac actgcgttct atgattttgt caagttctcc acgatcaagc caaacgccac
    16921 gacactttgg acaataatca atctcaactc cactcctatc actcataacc aaatctacat
    16981 tacaaactgg acataacata caataccttt ttttaaattt ttgatttaaa attataaaaa
    17041 gaaatattaa acaaatttac aacaagtttt aatgtttttt tgcatgtcta gtcatcataa
    17101 aactttgttc aaaaaatata agcaaagtaa cactcactcc tatagctaga gccaaagtca
    17161 cagaaacagt tgtaaaaaaa taatcaaaaa attgaaccaa aaattcagac ttagccttca
    17221 aatcatcact gcgtataaaa gaaataagat acaaaatcgc tttataagca taaattccag
    17281 gtatcatagg aataagagca gggaaagcga taatttcagc aggggttttg atgatttttg
    17341 ctaaagcaat tcctaaacat cctatgcaaa atgaagcaac aaaagttgcg attgctaaag
    17401 tttgaaaatg aaaatattcc accaaggtaa aacgaagccc atgtgcaatt gccgctaaaa
    17461 gagcagataa aataagggtt tttaaaggtg gattacaagc ataagcaaac ccaaatcccg
    17521 ccacagcagc aaaaaacata tctcttaaaa taaattcaat catcttaaaa tcccaaaatc
    17581 cgaaatacta agcgtcatgt aaattccaag tgctatacaa caaatcaaaa tagccacgct
    17641 gataatacgg ctaagcccca ttaaaatatg atcttttaat atatcaatca cagaatttat
    17701 aaaaaatacc cctggtataa gatacaagat actagaaccc aaagccacat cagaagtatt
    17761 agtatatccc atatccagtc caaaaaatac aaaccacgat gagataaaag aacaaaggat
    17821 gtattgaatt cttaaatcaa tctttgcttt agttaaaata tatcttaaca acaatcccac
    17881 aaaagttgca aaaaatacta aatttccagc accaaaatca ccaccaaaaa gcctacaaaa
    17941 agctgaattt gccatagaaa caaataaaag attaagcaaa taagaatgct ttttttgttg
    18001 agaaatttgc tcaaaaacaa cttttacttt ttcaagatcg tatttgtgat catatatagc
    18061 ccagcttaaa gcacttaaat caaaaataag cttaaaatta acatgggcat gatgattagg
    18121 tataacataa gttctttgaa tggagttatc atccatatcc acaacattta aagtaatatg
    18181 atgaaaaaag aaattgatat ttatctcata gccataaacc tcagctattc ttcctacgca
    18241 ttttgccacc ctagctgtat aagttccagc acctagtaaa gttttagtat atacgattaa
    18301 aaaattagtt aatctttgta tatcaggttt ttccatattt taataatctt tgattgaatt
    18361 tgttataatt atagcaaatt ttaaaataaa taaggagaaa aaatggcaaa aatcggtata
    18421 gttggtttag gttatgtagg agctgctaat gcttatagca tagttactca aggaatttgc
    18481 tcagaacttt atttatatga tataaaacaa gatttagctc tagctcatgc aagagatttg
    18541 gaagatatgt cagccattca tttttcttat acaaaaattt ttcatgtgcc aaatttagaa
    18601 aatttagctt cttgcgatat tatcatttta gcttttagaa aagaaagctt aaaagaatta
    18661 cctagtcgct tagtagaact tcaaaacaat atcctcgaac ttaaagacat tgtcttaacc
    18721 ttaaaaaatg ctaattttaa aggcaaatac attgtcgcaa caaatccaaa tgacaccata
    18781 acttactaca ctcaagtatt aagccaatta cctaaaaatc atgtttttgg tagtggaaca
    18841 aatttagata gttcaagact taagaaattt ttagccaaag atttaaacat aaattcaaaa
    18901 gatatttttg cttgtatgat tggtgaacat ggagattctc agtttgcagc actttctaat
    18961 gcaagcgttt taggacaaaa tttattagat ttttacaagc aaaaattagg caaagattta
    19021 gacatacaag aactcgaaaa agccgtgatt agcgagggat atttcatcta tgaacgcaaa
    19081 ggaagaacag aatttggcat aggaacttct tgtgtaaatt tggccaaagc catcctagaa
    19141 gatagaaaaa gtttacatcc tgtaagtgtg gtttttgatg atatagcttt ttcaatgccc
    19201 gctatcatag gaaaagatgg tatagaaaag gtttttgaat taaaattcaa tgaaaaagaa
    19261 aaaataaaat tagaaaattc aaaacaacaa atcaaaaacg ccatacaaag cgtaaaagat
    19321 aaaatttaag cctttttaaa aggctttttg attttgatat aaattaaact tgctaaaatc
    19381 acaaaaacaa ttataatgat taaaatttga gttaaataag ttttaatcaa ctcttcattt
    19441 tgtcctatat aataacccaa aaatacaagt atagccaccc aaatagcact accaagtgca
    19501 gtaaaaagta taaaatttac aagtttcatt tttaccaaac ctgcaggcat agaaatatac
    19561 tgacgaatcc ctggcaaaag acgacaagta aaggttgaaa attccccatg tttgttaaaa
    19621 aattcttcaa atttagcaaa tttgacttcg tttataccaa aatacttacc ccattttaat
    19681 acaaaatttt taccccaaaa aaagcaaata tagtaattaa tcaaagcccc taaaacagaa
    19741 cctaaagtcc cactaagtat acaaagagta atatcaagtt cgcctttatg tgccaaatat
    19801 ccagcaggta tcataacaac ttcacttgga aaaggtataa aacaactctc taaggtcatt
    19861 aagataataa tacccaaata cccccaagca ctagccgtct caacaataaa agaaatgatt
    19921 tcttgcatat tagccttatt tgaagaaaat tttaaaaaat tgtagcttaa aagattaaac
    19981 agtaaaaagc ggttttacac cgctttttta tttacctgca actgaaactt gatttggatt
    20041 gtccgctgca cgagcgatca tgcactcttt taaaatagca gcatcagctg gatcgctaac
    20101 ttttttatta atccagcgtt caacttgttt cattgttttt gactctggct ctggagcttc
    20161 gtattttgcc attaaacttg cacaatcagc caaagcaatg ataggtaata aacttgcaaa
    20221 aagtattttt ctcatctttt gctccttaga attttacatt atacattaac atgatattat
    20281 cagctcttgc tttatctttt ttcgctccac caaatggtaa gccacgatta ccccaaatgt
    20341 tttggatatt agtatagctt aagcgtaaga attgatatct atcaagttga taaatcacat
    20401 aaaaatcatg tgctgttcct cttgtcattc ttatattaag cggatcattg atacttggac
    20461 ggctcatagt ataccagtat ctacttcccc agaagaactc ataccctact tttaaagcct
    20521 tggtaaaatc atagcgtccg cctacatgca cagcatagcc gtcttcttca ttgaacttgc
    20581 cgttataacc ttgttgctga agaattgtgc ttaatggcaa agttaattga ttattgtttc
    20641 cgtgagaata acctaaagat ataaaataat taaaattcgt tccaaaagct ttgtaatttt
    20701 caaaatgaag atttgctata gttaaatctc ccaaatttac caccccatca tcatcaagaa
    20761 tggtggcagg tttattgctg ccattaggta aagcaattga accattgcta agtggtaaag
    20821 caaaatcact taaatatgca atattaaata atattaaatt atctcccata ccttctatag
    20881 gaagctctcc ttctaccgca gcatagtaaa gatttgcatc agcatctttt tgatcgctca
    20941 tccaatctct taccttacct tcttcatccc attgataagt tttaccataa gctgcacgga
    21001 tagctacttt atgatcttgc aaactttcag gcttataagt gatcactgct gcatcaccta
    21061 aagcgttgat tgccaaggct ggataagttg attgtcttaa agcattgttt ctaagattac
    21121 ttcctggacc atcggttcct ggctgtcttc ctatggttgc aatccactca ggtgtgatat
    21181 agtagtcaag ataagctcta tctacataaa gcacaggccc acttgatctt gtgtttcttc
    21241 ctgcatctaa gtcaagtgga cttccactcc aacccatttg agaccagttt ttagccatag
    21301 ataaacgacc atagaatttg gttttatcat taatatcagc attcatattt aaatgaagct
    21361 cattcatcca tttgttatta gcactataat cttgtccact aactttatag tttgtatttg
    21421 aaaccgctgt tgaaaactca agtccaaatt taaccttgct caaagcagct tgaaattctg
    21481 tttcatcggc tctatcatta agatcggcaa gttcagcttt tacagcttca ttttgcttag
    21541 cttgagcttc cctttctttt ctgatttctg caagttcagc ttgaatttgt gcaagctgtt
    21601 tttgaagctt ggttatctca tcatctgtat ttttagcaaa aagtgaagat gaaagaagac
    21661 aagcgcttaa aataagtgaa aacttagttt tcataatcat aactccttgt aattttgtta
    21721 catttagtaa attaaaattg tgattataga aaaaaaagtt taaaaaaaaa ttatacatta
    21781 atcattttta gctagtcaaa cttatgacta gctttgtaaa tattgtagtt tcaaaaaagt
    21841 tttaaaattt taaattttta aattttatcg caaattttga tgtctaaaat tttatctcct
    21901 tggcgtatag agtctaaaac ttccaaactt tcttcatctt ttggatcaat ttgtccaaaa
    21961 acagtatgaa ccccatctaa atgagcttga gggctgtgac aaataaaaaa ttgagagcca
    22021 cccgtatcgc gtcctgcgtg tgccatagat aaggttccac gctcatgttt atgttcttga
    22081 tcatcacatt cgcaaatgat ttcatatcca ggcccaccta taccattgcc gtgtggacaa
    22141 cctccttgta tgacaaaatt tgggatcaca cgatggaaat ttaaatcttt ataaaaccct
    22201 tcattagcca aagtagcaaa attacaaacc gtttgtggag cctcatcgcc aaaaagtttt
    22261 agtttcattg tgcctttttc agtttctata agagcaaatt tgtattcgtt tactttgctt
    22321 gtgtcaattg tctttatcat tatttctcct taatctatat ttgtataaac agcttgaaca
    22381 tcatcatcgt cttctaactt atctaaaagt ttttctatat cgctaagctg ttcttcgcta
    22441 aagcttacag gattgtttgg tatatactca agccctgctt ttttaagaac taaaccctta
    22501 gcttctatag cagaacttag ctcaccaaag gcagtataat caccgctaat tactaactct
    22561 tcttcatttt gttctaattc ttcaagtcct gcatcaatca aatcaagttc taattcttct
    22621 aaatctcctg caaatttttc aagatgaaaa accgcttttc tagtaaacat aaagcctaaa
    22681 gatccatttt gtaaaacttc tccaccattt ttgctaaaaa tagcttttac attagccacg
    22741 gtgcgtgtag ggttatcgct catacattca actataacca aagctccatg tgcagctttt
    22801 ccttcataat gaatgttttt aatatctgcg ctatcttttc cgctcgcacg cttaatagcc
    22861 gcatctatat tatcttttgg catattattt gcttttgctg tagctatagc acttcttaat
    22921 tttggattca tatcaggatc ggtgccacct tctttagcgg ctacttgtat ggctttagca
    22981 agcttaggaa aaagcttact cattttatcc catctagcct ctttagaagc tcttcggtat
    23041 tcaaacgctc gtcccataaa ttctcacttt ctttaaagat ttttaaactt aaaagtataa
    23101 actaaaaagg ctaattaaag ctttaaatgg tatgatttta ccatttattt ttggggagaa
    23161 gctttttgaa tatcgcaaaa aaagaacttt ttgttgcttg gtttttcttg attgctgcta
    23221 ttgtatttga agttttaggc actagttttt taaaaatgga aaatcaaatt ttaggctata
    23281 tatttatggc tttatttata gctttttctt atttttttat gggcaaggcg attaaaaaaa
    23341 ttcaagtagg catagcctat gctgtatggg agcttttagg gattattctt atacttttag
    23401 tttcttttat agtttttaaa gagagtttaa ccttaactca aattctaggc attattcttt
    23461 ctatcattgg aattatcatg attaatatag gcgaggttaa agaataatgt atatttttat
    23521 cattatttta tcagcattgt tagatatcgt agcaaattta ttgctaaaaa aatcagatgg
    23581 ttttaagcat aaaatttggg gcttagctgc gattgccaat gctatacttg cttttttcct
    23641 actttctttt tctttaaaat atgttccttt aagcatagct tactcaactt ggggtgctat
    23701 aggcatcata ggaacttgtc ttggtggatg gattttatat aaagaaaaat taaacaaaat
    23761 aggaatttta ggtatcatta tcgtaataat agcagtattt ttgctaaatt attaaaacag
    23821 caaaatgctg ttttaatgtt ccattttgtt tttcgcttca atacccatta aagaaaatgc
    23881 ggttttaata ctaagagcaa ccaaagaaaa taatttaagc aaatcatttt catttgcaga
    23941 gcctacaact ttattttcat tgtagaattt atgaaaattt gcagctaaat ttttaagata
    24001 atcaggaatt ttttgcaaag ctctagcctc aaaagcatcg tttaaaatag cctttaaatt
    24061 caaagcttca aaaagcaaat ttacaccatc ttgatttaaa ctttgtaagt cagctttcat
    24121 tacatcatcg atttttttac cagctttagc aaacacttga tgaattctag cgtgtgcata
    24181 gttgatataa tatacaggat tagagctatc ttctttttgc aaatcactaa tatcaaattc
    24241 caaatgagta tcgcattttt tactcaaaaa gatataacgc aaagcatcac ttcctatttc
    24301 atcaactaca tcgctcatca agataaaatt tcctgctctt ttgctcattt tataaggctc
    24361 tccatcttta agcagggaaa ccatttgtgc taaaataatc tcaagattat tagagtcaaa
    24421 tcccaaaaac tccatcgcag ctttcattct agggatataa ccatgatgat ctgctcccca
    24481 gatattaata cactttccat aaccacgact cattttatcc ttatgataaa caatatctgc
    24541 tgccaaataa gtcccgcgtc catcttcacg gataattaca cgatcttttt catcgccttt
    24601 ttgcgaagaa gcaagccaaa ttttaccttc ttgctcataa attcccttat gctcttttaa
    24661 agattctaaa gttgtattta aagcatcata atacgatctt tcgcttacat agttgtcaat
    24721 tttaatcttt gcttgttcta aattttgttt aatcaaaaca agcattttat cttttgccca
    24781 atcagccaaa ctagggatat tttcttcgct aaaaaattct ttaccaaatt tttcaaaagc
    24841 ttcttttact aaatccgcta tatactcgcc tttgtaatat tgctctggat attcaacatt
    24901 ttcatgaagt gtattttctt tcacacttag taaaatagaa agccctagta aataaatttg
    24961 attacccgca tcattgacat agtattctgt atcgaattta tagcccaaat gtcttgcaag
    25021 tcttgttaag gtgtctccaa aaacagcgcc tcttgcatgt cctatgtgta aaggcccagt
    25081 aggatttgca ctcacatatt caagcaaaaa actttcttgt tttttttctc ctttagtaaa
    25141 atcatttgga tttgttaaag cctgatttgc aagttcattt aaaaaagttt tggaaattct
    25201 aaaatttaaa tacccattta cagcttcaac tgattcaaaa caatcatgat tttgaaattt
    25261 gctcgctaag tcgctagcga tcaacatagg ggattttttt aattccttag ccagtgaaaa
    25321 agccaaaggg gtagcaaaat gcgctaaatt tttatccttt ggattttcaa gcgcaaaatc
    25381 acactctaaa atctttttaa tttcattaaa aataatactt ttcaaaagac taaaccttaa
    25441 gctttttttg tttcgtctat acttgcatca gcatttgtat tattagttgt gtttttgttt
    25501 tcttctattt tttgagtatt ttttgctact tcatcatcat tattcatttc atctttaaaa
    25561 gttttaatac ctttgcctaa accctttgca agttctggaa ttttttttgc tccaaaaagc
    25621 aatacaacaa tcaataaaat aatcaaccaa tgacttggac ttgaccaacc acccatttta
    25681 ttctccttca ttccaaatat tctgaatttg ccctagattc tgccctttgg ttctaaattt
    25741 atgggcgatt aaaatcgctc gcaatgcttc ataactttgc tttaactcat cgttaatgat
    25801 aagataatca tactcactaa gctctttcat ttcatcacta gcgttttgta atcttttttc
    25861 tagttgtatt attgtatcag tatttcgctt aataagtctt ttttttaact catctttatt
    25921 ttttgtagta ataaaaacag aaacaatctt atcagccatt ttttttctgg ctattttaaa
    25981 tccttgcaca tcaatatcaa aaacaactat ttttccatta tctaaagcat tttgagtgtg
    26041 ctttaaagaa gtaccataaa aattttcatg cactctagcc cattctagaa aatgatcact
    26101 atctatacct ttttgaaatt cttcatggga tataaaatga taatgtattc catttttttc
    26161 accctctctt ggtttgcgag ttgttgaaga aatagaaaaa taaagctcat cttcaaattc
    26221 atcaaaaagt ttttttaaaa gagttgattt tccagcacca ctaggacctg aaatcaacaa
    26281 aacaaaacct tgcaatttca atcctcttta aaactaatgt ttatatttat attcatattc
    26341 atacccttaa gagcagcttt taaggtatca tctttaatac ttgaagtgat cgctcctgct
    26401 atgctttggc taagctcatt aactatctct tcgctattat catctttagt tacatcactt
    26461 actataggct cttcattttt ttctaagatt tcctctccaa gagcttcttg tatatcactt
    26521 tctttcaatg tatcaaaatc acttatattt aaatttggca caaccacttc ctcttcattt
    26581 gttcctaatt ctttatcgtc taaaattggt tcatctttaa aatcttctaa gaccttgcta
    26641 ctattgtcac tatcaatacc ataatcaagc tcatcaagtt gagctagttc ttctttgatt
    26701 tgatcttgag tactcaaatt tgaagtaaaa tcatccattt catcttgaac atcttcttcc
    26761 acaacaggag caaactcctc taaaacttcc tctgattctt cattatcttt tgcttgacct
    26821 aaaaattcag catcctcagg aagatcatca aaatccattt ctttttcttg ctcttcaacc
    26881 acaggaagat catcaaagtc gcttatatta gcttgtaatt ctttgttat
//
LOCUS       DARBAR010000008        26557 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.008, whole genome shotgun sequence.
ACCESSION   DARBAR010000008 DARBAR010000000
VERSION     DARBAR010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26557
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.008"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..942
                     /locus_tag="SB815_000228"
     CDS             <1..942
                     /locus_tag="SB815_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906004.1"
                     /translation="LLKEKFETTSQNLTKISHEKDRYLHLLEENLYQLINISNAMRCL
                     NEGYNKEINSLILNALNSQKDQIRLELNEALEHHKSIIGTSHGKVLQFEASVAIVNND
                     ELENFLLANLLSYFGIESTCFKNLSFDVNDFHLIFIKDKIFNKNVKKNYDFIVMGRHK
                     NTHYEYFLTLPFEKKDLENILQNKLDKVCTLKFKTPYQNNVLLFKQNDFDATLFFNII
                     EKQCDKNICINSFSQLKQELSKETYRLILLDYELIKFDLEQMRNLLSAYKKQHPQSHI
                     IFFSKEKVRDFDCVSEVLSDVSRNDLITLLRKYLPKA"
     gene            complement(939..1841)
                     /locus_tag="SB815_000229"
     CDS             complement(939..1841)
                     /locus_tag="SB815_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEG0906005.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKAMLEKNVEFDFLTLTANGEPSLYPYLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(1838..2860)
                     /locus_tag="SB815_000230"
     CDS             complement(1838..2860)
                     /locus_tag="SB815_000230"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEG0906006.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPVFGNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVEKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            complement(3044..3364)
                     /gene="ciaC"
                     /locus_tag="SB815_000231"
     CDS             complement(3044..3364)
                     /gene="ciaC"
                     /locus_tag="SB815_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HEG0906007.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFTTIDAGNATN
                     NTKA"
     gene            complement(3420..4619)
                     /locus_tag="SB815_000232"
     CDS             complement(3420..4619)
                     /locus_tag="SB815_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0906008.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTNLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            4732..5334
                     /locus_tag="SB815_000233"
     CDS             4732..5334
                     /locus_tag="SB815_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906009.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFDNKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPLLSLLNASDCMQEAYIKVLLELMQRAKKDTKTKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKL"
     gene            complement(5324..6418)
                     /gene="pdxA"
                     /locus_tag="SB815_000234"
     CDS             complement(5324..6418)
                     /gene="pdxA"
                     /locus_tag="SB815_000234"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HEG0906010.1"
                     /translation="MKKLAISIGDINSIGLEILVRSHEELSKICTPFYFIHESLLNKA
                     LKLLNLKLFNAKIVAFKDDKDYEFNFIKKENSLEIYSFCLPLGFKVDENFEIQAGEID
                     AKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGKGVYLP
                     YPLVADTAFTKTGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLHSKA"
     gene            complement(6415..7188)
                     /locus_tag="SB815_000235"
     CDS             complement(6415..7188)
                     /locus_tag="SB815_000235"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEG0906011.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPVNLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLKQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            7244..8218
                     /locus_tag="SB815_000236"
     CDS             7244..8218
                     /locus_tag="SB815_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG0906012.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKANNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNYHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPYLKHLAFRAFDEVAMIKKELRSL
                     GAKTVVLNSGVPTTLSALKQNISYEKYEATKVNGKKLCHKDFLNYAIKLFHMEEKKAI
                     KEVGTMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            complement(8215..9165)
                     /locus_tag="SB815_000237"
     CDS             complement(8215..9165)
                     /locus_tag="SB815_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEG0906013.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDEKILKPPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFIIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFTCELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLTKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLAFMDFGFE
                     DLLEYAKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(9162..9983)
                     /locus_tag="SB815_000238"
     CDS             complement(9162..9983)
                     /locus_tag="SB815_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG0906014.1"
                     /translation="MKALWILLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNND
                     KNIPTFAHPKNQEKILAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     IENKKIFPPKTIQERITKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRATTGTPIYAANSGVVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKIGQKIKKGELIGLSGATGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            complement(9980..11974)
                     /locus_tag="SB815_000239"
     CDS             complement(9980..11974)
                     /locus_tag="SB815_000239"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEG0906015.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWNNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSNHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            complement(12030..12650)
                     /locus_tag="SB815_000240"
     CDS             complement(12030..12650)
                     /locus_tag="SB815_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG0906016.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSSFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVSLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNASELKGFLQKYL"
     gene            complement(12647..12979)
                     /locus_tag="SB815_000241"
     CDS             complement(12647..12979)
                     /locus_tag="SB815_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906017.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKSELLNLANALDKQKKQGEKKEKH
                     KNYLKDYE"
     gene            complement(12989..14614)
                     /locus_tag="SB815_000242"
     CDS             complement(12989..14614)
                     /locus_tag="SB815_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG0906018.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTSLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            complement(14620..14994)
                     /gene="hspR"
                     /locus_tag="SB815_000243"
     CDS             complement(14620..14994)
                     /gene="hspR"
                     /locus_tag="SB815_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HEG0906019.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            complement(15010..15903)
                     /locus_tag="SB815_000244"
     CDS             complement(15010..15903)
                     /locus_tag="SB815_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HEG0906020.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEAIINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            16103..17521
                     /gene="htrA"
                     /locus_tag="SB815_000245"
     CDS             16103..17521
                     /gene="htrA"
                     /locus_tag="SB815_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HEG0906021.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFSQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            17597..18271
                     /locus_tag="SB815_000246"
     CDS             17597..18271
                     /locus_tag="SB815_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG0906022.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            18268..19515
                     /locus_tag="SB815_000247"
     CDS             18268..19515
                     /locus_tag="SB815_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG0906023.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            19608..19682
                     /locus_tag="SB815_000248"
     tRNA            19608..19682
                     /locus_tag="SB815_000248"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:19640..19642,aa:Asn,seq:gtt)
     gene            complement(19773..20021)
                     /locus_tag="SB815_000249"
     CDS             complement(19773..20021)
                     /locus_tag="SB815_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HEG0906024.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(20032..20631)
                     /locus_tag="SB815_000250"
     CDS             complement(20032..20631)
                     /locus_tag="SB815_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG0906025.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDISFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
     gene            20779..21444
                     /gene="dccR"
                     /locus_tag="SB815_000251"
     CDS             20779..21444
                     /gene="dccR"
                     /locus_tag="SB815_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HEG0906026.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            21437..22627
                     /gene="dccS"
                     /locus_tag="SB815_000252"
     CDS             21437..22627
                     /gene="dccS"
                     /locus_tag="SB815_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HEG0906027.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     SFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNTKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(22670..24307)
                     /gene="groL"
                     /locus_tag="SB815_000253"
     CDS             complement(22670..24307)
                     /gene="groL"
                     /locus_tag="SB815_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEG0906028.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(24329..24589)
                     /gene="groES"
                     /locus_tag="SB815_000254"
     CDS             complement(24329..24589)
                     /gene="groES"
                     /locus_tag="SB815_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEG0906029.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            24751..>26557
                     /locus_tag="SB815_000255"
     CDS             24751..>26557
                     /locus_tag="SB815_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906030.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSSLELQANIANMADFNLQGALSPFKLGFDLDYLISLKQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGRGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDMSKNILSTDFNLNIPSLAKLEK
                     LTKTRLNGSLGVIGETSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIELPNTIFS
                     LDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLNAKAHIIGTQIQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     AGMPNYASGVVNAKVNLDNIDFNNLNGKANLEAKGILNAATLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKM"
BASE COUNT         9029 a         3860 c         4036 g         9632 t
ORIGIN      
        1 ttgttaaagg aaaaatttga aactacgagc caaaatttaa ctaaaatatc ccatgaaaaa
       61 gatagatatt tgcatttatt ggaagaaaat ttatatcagc ttataaatat atctaatgca
      121 atgcgttgct taaatgaagg gtataataaa gaaattaatt ctttgatttt aaatgcctta
      181 aattctcaaa aagatcaaat tagattagaa ttaaatgagg ctttagagca tcataaaagc
      241 attataggaa catctcatgg aaaggttttg caatttgaag caagtgtggc catagttaat
      301 aatgatgagc ttgagaattt tttacttgca aatttacttt cgtattttgg catagaaagc
      361 acttgtttta aaaatttaag ttttgatgtt aatgactttc atttgatttt tatcaaggat
      421 aaaattttca ataaaaatgt aaagaaaaat tatgatttta tagtgatggg tcggcataaa
      481 aatacacatt atgagtattt tttaacttta ccttttgaaa aaaaagatct tgaaaatatt
      541 ttgcaaaaca agcttgataa ggtttgcact ttaaaattta aaacccctta tcaaaataat
      601 gtattgcttt ttaaacaaaa tgattttgat gcaaccttgt tttttaatat aatagaaaaa
      661 caatgtgata aaaatatatg tataaattct tttagtcaat taaaacaaga attaagcaag
      721 gagacttatc gtttgatttt acttgattat gaattaatta aatttgatct tgagcaaatg
      781 agaaatttgc taagtgctta taaaaaacag catccacaaa gccatatcat ctttttttca
      841 aaggaaaaag ttagggattt tgattgtgtg agcgaagttt taagtgatgt aagtagaaat
      901 gatcttataa ctttacttag aaagtatttg ccaaaggcct aaactttata aaatttaact
      961 ccagctaaat cgagaatttt tacctttttt tctttgataa gttgatttaa gagagttttg
     1021 gattgttcat caaatttcac ttcaatgtct atttcgcttt gtgagcgcaa atgaagcatt
     1081 tttaataatt cttcttcatt gaagcttagt ttttcacctt cataatgtct tttggctaag
     1141 agtacaggag tagaatctat aagtttagaa agttctaaaa gtttttcttc gcttactttt
     1201 ttaacagcat aagcaggagg tctatctatg gtgcttagat caacccttaa aggcatgatt
     1261 ttttttaaag cttgattaag tgcttcaaat tcttcttcgt tgtcattaag atctttaaca
     1321 actagaattt ccataatcaa atctccatta aacctagctc taaaatctgc cattttttct
     1381 atcatttttt ctaagtcaat gttttttaaa gctctatcaa tacgataaaa agttttagca
     1441 actgcactat ctaggctaaa tttgaccaca tctagtttta gcaaagcatt aaatttgtct
     1501 tcatctaata cagctgtacc attgcttaaa ataagcaatt ttttatcttt agcaatgctg
     1561 cgtaaagata aaataagctc atttaaataa ggataaagac taggctctcc gttggcagta
     1621 agggtaagaa aatcaaattc aacatttttt tcaagcatag ctttaacttc agagataatt
     1681 ttatctatgc tgataatttc atcttgtttt tcttgggctt tttttggatc aagctcgcag
     1741 taaacacaat caaaattgca ttgtttttta ctagggctta aatctatacc caaagatctt
     1801 ccaaaacgcc tagagctaac aggaccaaag agtattttca tttagctgaa ctttcttgta
     1861 caagcttgat aaaatatttt gcattttcaa caggaatatc aggcaagatc ccatgtccta
     1921 agttgaaaat atgagcttta ttttgcatgg tttttagtat tttttccact ccttctttga
     1981 tggcattttt atcataaagt ctgcaaggct ccatgttgcc ttgaagagtg tatttgtgtg
     2041 atagtttatc acgtgctaaa tcaagcgggg tgctccaatc aaccccaaaa acatcaaaat
     2101 tgccatcgat tctatccaaa taaccgctaa tgcctttagg gaataaaatt acaggtatat
     2161 ttgggtattt gcttttaata aaatttgaaa tttcaagcat ataattaaaa gagaattcaa
     2221 aaaacttatc atattctaaa gcacttgccc agctatcaaa aatttgtata gcattagcac
     2281 ctgctttaat ttgctcttct aaataaagtt ttaaaacttg agttagtttg tttagaattt
     2341 tatgtaaaag ttctgggttt tgataaagca tttttttaca ctttgcataa tttttacttc
     2401 cacttccttc tatcatatag gtagctatag tccaagggct tccgcaaaat cctattaaag
     2461 ccttgttttg agataatttt tctcttgtaa gctttaaggc atcatagaca taatttaatt
     2521 ttttatgtgc attttgatcg tcaagttttt ctaaatcttc tagggttgaa ataggattac
     2581 caaaaacagg cccttctcct ttttcaaaac gtaaattcat acccatttca agaggaacaa
     2641 ctaagatatc tgaaaaaatg attgctgcat ctacatctaa aatatcaata ggctgtaaag
     2701 aaacttcaga agctttttta tagtctttgc ataaagagag aaaatcaccc gcttgttttc
     2761 ttacttccat atattctggc aaataccttc ctgcttgacg catcatccaa ataggggtgt
     2821 agggtgtagg ttttttaaag caagcatcga taaaaatcat tattttcctt tgtttttagc
     2881 aaaattataa cagaatttga taaattaaat tggtcaattt ttctatattt tcttcatata
     2941 gaggaaataa taaatttttt cattttatcc agagttatta gaaattttac gagaattatt
     3001 ggaattctcg tttatgtagt ttgagttttg attgatttgt atattaagcc tttgtattgt
     3061 ttgtggcatt tcctgcgtca attgtagtaa aaagcttatt tagcaaagtc tcctcatttt
     3121 ttttgtattg atcttctctc attttttgcc aagcataaga tctaaaatct tctctaacag
     3181 caccaagatc aatgtcttcg ttagtaaatt tgcttgagtt tgttttttta tcttcctttt
     3241 cttctttgtt ttttacttca tttaatgtgg cttgaaattc atctgccgaa gtattttttt
     3301 ctttaacttt agttgtggtg ctaaagatag catttgatgt tttttgagta ttatctacta
     3361 ccattttctc ctcctttatt taactttaca ttaaataagc aagcaatttc tattccaatt
     3421 tatacctttg taaaactttt tctttgaaat tttttataat ttaatttatc tttggcaaaa
     3481 agcaaggcaa aaatcaaagc agggcttaca aaaagtgctg aaaataaagc attaaattct
     3541 atacccaatc ttgctaaaac aatcccacct aaaaaacttg ctaaagctat gcctacatta
     3601 aaagctgctt cattcacact tactgtactg tctatgactt tataagtatg gcgtttagct
     3661 ttagtaatgc taagcatttt tagtgcaggt atggttgaaa aggcaaaaaa tcctatcaaa
     3721 gctacgctaa aaatgattaa aattttagaa tgcatggtga gaaatacact taaaaatact
     3781 agaacttgta tgcttaaaat aagacgcaaa gaaaaaatag cacctttttt atctactatt
     3841 tttccgcccc ataaattccc acaaattgca caaattccat ataaaagcaa gatataagct
     3901 gtatcttgga ctttaaaacc gcttatttct acaagtattt tttgcaaata agtataaaga
     3961 acaaattgag ccccacaact acaaatggtt atagtataag tttttaacaa attttgatga
     4021 gaaaaagcag ggattagatt tttaagattg gttgggctag gatgtaaatt tttgggcatc
     4081 atatgccata ctccaaaaaa tgctagactt gtaatgataa aaatgagtaa aaagataaat
     4141 ttaaagccaa aataatgccc tataaaagtt ccaagcggca ctccagtaac taaggctaca
     4201 gtaagccctg tgaccattat agctagagca cttgattttt tatcatctgg agttatagca
     4261 cttacagcta aggtggcaat gacaaaaaat accccatgtt gtgttcctgc tataaagcgt
     4321 gcaaaagcag taagatagaa attttggcta aaaaagatga tgaaatttgc taaagcaaaa
     4381 attccaagat tgattaaaag ttgtgtatgt ctatgaaaac gacttaaagg tatggtgata
     4441 agaggagcac ctataacaac acctatagca tataaggttg taagatagcc cgcggttttt
     4501 gcatctacgc taaaatacgc ttcaacatca accaaaactc ctgccataac aaattcagtt
     4561 acgcccatac aaaaagcact aagagctagt gcaaaaagag cttttttgta attttgcatt
     4621 ttaagttcct tataaaaaat aaaaacgcat tataataaaa taaaggctta atttccttaa
     4681 aaaattcaaa atatttttgt taaaataaaa taaaaatttt aaaggtaaat aatgaaaaaa
     4741 attattttat tgcttggttt aagtttggcg agtttagggg ctttgagttt tgatgagctt
     4801 atttataaag atgaagtaaa acctagtttt gattgctcta aaatcaaata tgatggcaaa
     4861 agtgatgatg aacttatgat atgcaataaa attggtgtgc gtaatgaatt tgataataaa
     4921 aaacttgctt tagtagataa catctatagt agtttatatc aaaatatttc aaaaaaagca
     4981 gataaaaaga tgaaaaaaga ttttaaagcc atttcaaaaa agatgcttaa agaaagaaaa
     5041 atttgtataa aaaatatgca aaatacaaaa gcaggggaaa atcctctttt atctttactc
     5101 aatgcaagtg attgcatgca agaagcttat attaaggttt tattagaact tatgcaaaga
     5161 gcaaaaaaag atacaaagac taaagaagtt ttagagcaaa tttttaaaaa taaagttgat
     5221 aaatatgaaa atttactcac tcaaagttta aataccaata aagatttgca agattttata
     5281 gacagcttag ctaaagaaga tttgattgat tctagggcta aatttaagct ttagaatgta
     5341 aattgattgc aaatttagcc gcttcaaaat aacttttagt gttgatttta gcatttttat
     5401 aggccttatc aaaggccgtg ccatgatcaa cgctaacgcg tatgataggt aaatttaaac
     5461 ttacattgat gcttttatca aaatacaagg cctttaaagg agcaagggca agatcgtgat
     5521 acatagccac taaacgattg cagtttttta aaccagtctt agtaaaagct gtatcagcca
     5581 ctaaaggata gggtagataa acgcccttgc ctttaaaatt taaaagcaat tctttttgta
     5641 aattttcatc ttttaaggct tttttgaaaa atttttcatc ttttttagag tgtaaaaagg
     5701 cattaacaaa ggctatagct ttttccatga tcttttcttc ttctccacct ataactccat
     5761 aatctccagc gtgaggatta aaacctaaaa gccccatttt tttaaaatgc gtttctttgt
     5821 aaaaatcttt taaaaagata cttaaatttt taaaagtgat ttttttactc actttagcta
     5881 aaggtatatg ttcgctaaaa agccctacaa aaagttcttt gcaacctaac atcataatgg
     5941 catttttttt aaaaaaatcc cttaaagcat cggtgtgtcc tttgtattta agtcctgcat
     6001 cttcccaagc ttttttgtgt ataggtagag taagtaaggc atgggcgtgt ttttcataga
     6061 caaaataact tgccgcctta aagcttaaaa aaccataaag tccacttttt gcatctattt
     6121 ctccggcttg gatttcaaaa ttttcatcca ctttaaagcc taaaggaagg caaaaagagt
     6181 aaatttcaag agaattttct ttttttataa aattaaactc atagtctttg tcatctttaa
     6241 aagctacgat ttttgcatta aaaagtttta aatttaaaag ttttaaagct ttattaagta
     6301 agctttcgtg gataaaataa aaaggtgtgc agattttgct tagttcttca tgagaacgca
     6361 ctaaaatttc aagtcctatg ctgtttatat cgcctatact aatggctagt tttttcatct
     6421 tttaataagt tctttcattt ccaaaatagc gttttgaagt cctgtaaata cagatcttgc
     6481 tacaatgctt tgtcctatat ttagctcgca aatttcttta atttttacta cgggttttac
     6541 atttttgtaa tttaaaccat gtcccgcggc tacttttaag ccaagttcta ggcctttttt
     6601 ggcacagagt tctaaatttt gtaattcttt ttcaaattga gcttgcaagg tttttttatc
     6661 ttgatcaagt tcttttaagg caaaagcagt atgagagata ttgctaaaaa gtgcgttgtg
     6721 taaattcgca taatgtcctg tatgaagctc tataaattgg gcttttaaaa tttttgattt
     6781 ttctatatct tctaaactag gattgataaa aagtgaaact tcaatgtttg cattttgaag
     6841 tttttctatg ctttgtttta atttagcatg atttaaacaa agcccccctt ctgtagtaag
     6901 ctcttctctt ttttcaggca ctaaagtaac gcggtggggt ttgagtttaa gagctaaatt
     6961 taaaatttca tcatttaaag cacattctaa attgacaggg cttttgcaaa attttataat
     7021 attttccaag tcaaaatcct gagcatgacg gcgatcttct cttacatgca aagtgatttg
     7081 atctccgtgt ctagctacta taaaagcagc ttctaaaaga tcaggatcat ttaccattct
     7141 agcttgtctt aacactgcaa tatgatcgat atttacacct aaaagcatat ttttccttta
     7201 gaactttttt gctattatac tataaaatca aataaggaaa gtcatgttag gtatagatct
     7261 tggttcaaat actttaagag cagtacaaat ggatgaaaaa ttaaataaat taaaagaata
     7321 tgaatttgtt attggggcag cgaaaaatct aaatcaaagt ggagaaattt ctaaagaagc
     7381 catacaaaga ttaaaaaata ctttgagtat tttagctaaa gagcaagatt taagcaaagc
     7441 gagagctgta gcgactgcag cttttagaaa ggcaaacaat acaaatgaaa tttttgccca
     7501 tttaaaaaaa gaatttggga ttgattttaa gcttatagat gccaaaagtg aagctaagat
     7561 cagtgtttta ggtatgcaat caggtttaag aaggcttaaa atttggggag agtttgcgta
     7621 ttgtgattta ggaggggctt cttgtgagct ttcttttgga aaaagtttta aaagttttga
     7681 ttttggtatt attagttttt atgaaaaaaa ttaccattct tattataaat cttgtatttc
     7741 ttataaaaaa ttaataaaaa aatatcctaa atttatcata aatattaaag ataaaaaact
     7801 taaaattcat tttttaattg caaatcccta tttaaagcat ctagctttta gggcttttga
     7861 tgaggtggct atgattaaaa aggaacttcg ttctttaggg gctaaaacgg tggttttaaa
     7921 ttccggagtt cctaccacac ttagcgcatt aaaacaaaat ataagctatg aaaagtatga
     7981 agcaactaaa gtaaatggta aaaaactttg ccataaggat tttttaaatt atgctattaa
     8041 actttttcat atggaagaaa aaaaagctat aaaagaagta ggcacgatga gaaaaaatta
     8101 tttgagtgca ggttgtttgc tgttttatgc tttgtttgat aaacataaac ttctagtcat
     8161 tgatgagggt ttaagagagg gggtttgttt agcaagtatg aaaaatataa aattttagtt
     8221 tttttgaaat tcgaaaaaat gaaatttttc atcaaaatta aaaaataaaa ttttagcttg
     8281 agataaaaaa ctttcgtaag ttttaatgtt tttatttttt gcgtattcta ataaatcttc
     8341 aaaaccaaaa tccatgaaag caagactttg ttttttaaaa gctaaaggtt taaaatcata
     8401 ttctttgatg agtttttgaa gatgagtaaa attgacatta taagttagat cgcttttgcc
     8461 gaaaaaatct tttaaagata cttcaaaagg gctaaaaact tcgtgctttt gatagattct
     8521 taagctaaaa ctttgtggat ttaaagttcc atagtcaaat cccgcaaata taaatctctc
     8581 acaagtttgg tttaaatctt taaaaaaatt ttcaagctct aaactgagtt cgccttttgt
     8641 aagatttaaa gctttgcatt ttgtgatcaa attttcatcc atatttttaa aaataagttt
     8701 aaaattttct acaaatgcca ttttatcatg atctataagt tcgcaggtaa aactatcaaa
     8761 aagttcattg caaaagaaaa aagcgttctt aaaatggcat tctttaagac tatttttgtg
     8821 agtaaattcc actccttcta aagtcttttt ttgtaaagtt cttaattttt catgtggttc
     8881 tatgatgaaa aaagaaattt gagaaaaaat ttcaggtctt aattcaagca aagcggctaa
     8941 aaaatcacga cttaaatagc cttcattagc gcctatttct acaagttcta gtggaggttt
     9001 gagaattttt tcatctatta aatttaaaaa atgcttggct aaaagtgtgc caaaaagatt
     9061 tcctacgctc acagcagtaa aaaaatctcc gttttttcct atacttacag catttttata
     9121 atagctttca tggagccaag catggaaaaa gtcactaaat ttcattgaaa aatagcatta
     9181 aatttggata caaaatccaa aggatcaact tgtttgcctc cagctaaaat tccaaaatgc
     9241 aaatgcggcc cacttaccct acctgtagcc ccactaagtc ctataagttc accttttttt
     9301 atcttttgtc ctattttaac atcgatttta gaaagatgat aatattgtga ataaattcca
     9361 aaaccatgat caatgactac tgaatttcct gcgaaataac gatcttttgc aatttttact
     9421 acacctgaat tggctgcata aataggtgtt cctgtggtag ctctaaagtc cgttccgctg
     9481 tgataacttg ctactttttc attaaaagtt cttgctttgc caaaatcact tgtgataaaa
     9541 gaatttaaag gtatattaaa agcaccgtta aataaagctt ttggagtata agaactataa
     9601 atcgcattgg cttcttttaa ttctttagtg atgcgttctt gtatggtttt tggcggaaaa
     9661 atctttttgt tttcaatttg caatttttca cttttataat taccttctaa agtttttatg
     9721 aaaatttctt cttttttatc tttataaaat gcgataagtt tggtgttttg cgggggattt
     9781 ttgtaaggta aggaaaaaat agctagaatt ttttcttgat ttttaggatg tgcaaaggtg
     9841 ggaatatttt tatcattatt ttttaaagat aaaaaatctt tcttatctag ttccaaaaat
     9901 aaagcttgac ctttgatgag ttctaaattt tgagctccaa aaagccaaag agtaaggctt
     9961 aaaagaatcc atagggcttt cataggctta actctttaag atcggcgatt tttaaaaact
    10021 ccgcataaat ttcataaacc aaagcttggc gattattttt aagtttttca tcttcagcat
    10081 taatcatcac ttgattaaaa aactcatcaa taaaaggctt aagtgcaaaa agattttcaa
    10141 gtttttcttg taaagagttg gctttagttt tttcttgaaa agctttgtaa agtttacttt
    10201 ctgcttcttg aacaaaaaga ctttcatcaa ctttatgagg atttttagtg gcgatattgg
    10261 ctagtctttt aaaggttgca aaattttcat taaaattatc ttttttgcta agttttataa
    10321 gagcatttac gctttgattg atatggataa gatctgtatt ttgtgagctt aaaaccgctt
    10381 ttacaaaaga agcattgact gtataaaaag tataaagtct ttcaaaaata aaatctttta
    10441 aaatttgcat atcaaagctt ttataatgat ttgaaagttt ttctaataaa atttggatat
    10501 caaattcttt atttaaattt aaagcaattt taatgatccc attggcagct cttcttaagg
    10561 cataaggatc ctttgttccg cttggaattt ttcctatgct aaaaagtcct ataagggtat
    10621 caagcttgtt tgcaagggct actatgcttg aaaattctgt acttggaagt ggagcttgtt
    10681 cggaattagg aagatattgt tctttgatag ctaagcaaat ttgataatct aagcccattt
    10741 tttgcgcata ataacttccc ataatgcctt gcaaatcagt aaattcataa accatttgtg
    10801 tggctaagtc tgctttggcg tattttagtg ctgtgctgat attttcgatt ttatcattat
    10861 ggagcatttg acataaaatt tcagcaattt taatctctct taaactttta tcttgcattg
    10921 tgcctaaacc ttcaagatag gtcattttgg caagtttttc aggttttaag ccattttgta
    10981 aatcattttg ataaaaaaac attgcatcgc taagtcttgc acgcaaaact ctttcatttc
    11041 catgtatgat ttttgaataa tccttacata ctgcattact tactactata aaatgattac
    11101 ttaagccttt atcgttaaaa actgcaaaat aacgttgatt ttctctcatt gaagtgatga
    11161 ttacttcgct aggaatttct aaaaattctt cttcaaaact tcctaaaagt gcattaggat
    11221 attctgtgat agcaactact tcagctaaaa gctcttcatc ttctccaatt tgtatatttt
    11281 tttgactttc tatgagttta aattgctcaa gtattttttc ctttcttttg attggatcaa
    11341 ggatgatata gtttttttct agtagttcaa aatattcttt tgcattgtta aaatcttgca
    11401 aatcataact tacgcttctg tgaatgaaag tttttttagt actttttact ccatagcttt
    11461 gaaaattaac aagttcatca tttaaaatgc aagctataga acggatcgca cggatgaatt
    11521 caaaagaatt tgcaccccag cgcatacttt tgccaaaact aagacttttt agaaattttt
    11581 ctaccatttc tcctaaaatt tcttgacttt gcaaaccttt aatagctttt tgatggtaca
    11641 aaacttcctt gcctttgatt tctttaaaag agagttcatt ttcactgatc cttgcttttt
    11701 gcaggaagct ttgtcccgca ggagttaaaa ctccatcttt ataagcaaca tttttaggtg
    11761 ctcctataaa ttcagcaaag ctatcttctt gtttgtctgc aaaattttca tgaaaaaaaa
    11821 ctaaacgacg cggagtataa taaaatttaa aatcacttac caagcggtat tcttctaaaa
    11881 cattgttcca ttttttttct atattagcta attcttttag caaaggaata gcaggtaatt
    11941 cttctgtacc aatttctatt aataattcac tcataattta ctctttttaa aatttatttc
    12001 taattttaac taaaatttca ttaaaaaact tataaatact tttgcaaaaa gcctttaagt
    12061 tcactagcgt tgctaaattc attttctttt aaattttttt gataccattt ggcatgaaaa
    12121 taaggcaaat tagcattttt agcacattct ttatcttttt gactatctcc tataaaaacg
    12181 cttgttttat atggagcctc gctttttaaa agctctagca tcataggatg aggtttgggt
    12241 tctatgccta aacttacgcc taaaatttta tcaaaataag gaatgatatc gtgtttttta
    12301 agtatgtttg aaagtgagct ttgcggggcg ttagtagcaa tagctaaaaa acaatttttg
    12361 ctttttaaaa attctaacag ttctttcacc ccttcaaaaa gcaccacgct ttgttcatag
    12421 tgtttgacaa aatatttttc gtagccttct ttaaaactag aatgatggaa attttctata
    12481 ttataaagtt cttttgccca gtcaatatta ggagtattga tggtttgcat aatgatttct
    12541 cttgaaagtg gggctaggtt taaatcctgt cttatttcat tgactgcaca agaaatggca
    12601 tttgcgctat cgattaaagt tccatccata tcaaaaaata cattaatcat tcataatcct
    12661 ttaaataatt tttgtgtttt tcttttttct caccttgttt tttttgctta tctaaagcat
    12721 tggcaagatt taaaagttcg cttttttctt tggaaaaatc taaacaagca ttgacaaaaa
    12781 attcaagatt ttttgcatag gttgagttaa gatttaccgc gggatttttt tcaaaaaatt
    12841 tagcattttt tagcattctt tcttcaaatt tagttttatc aaaatcttct tttttaagtg
    12901 cagatatagc gccattgaaa aatttttcaa gatttcttag gtattttacg cgtaaggctt
    12961 tttcttcatt ttttgtcaaa attcttcctt aggtattttt atgaatgcgg cattctagtg
    13021 cttcttgaac taaatttcta gcgattactt tttcagagcg aatgatgcgt atattttcat
    13081 ctatgctaga aaaaagcatc tttttcaaag ttccatttac atgaatgata gtatctatag
    13141 gttttggata attagctagc acttgacata aaatttcaag tttagcttca tttgtaactg
    13201 tgataatagc tacggcacat tcttctatat tggcaatttt taaggtttct tcttgagcag
    13261 cattggcaaa aacgacattt tcaccccgac taactccaag ttctactaaa tttaaatcac
    13321 tttctaaaac aagataaggt acgcctgtat ttttgatttt ttgtacaact tcttgtccta
    13381 agcgtccgta gccaaaaaca acaagatgat ttttaagctt gatattactg tcaatatttt
    13441 gcacagcgtt ggtattaagt gctatatctt ctacaacatt ggtaattttt cttatattgt
    13501 ttaaaataaa aggcgtgata atcatggtta aaatagaaac aacaattaaa atttgtgaag
    13561 ttttgatatc aagcatattt tttgcttgta aaagagaaaa aattgctagg gcgaattcgc
    13621 caatttgcgc tatggcaaaa gctgttttaa gcgctactct ttttttggtg taaagaaata
    13681 aaaagccaaa aactatgcca aattttaaag ccattacaag aagggttaaa actatgatta
    13741 aaaaccaatt ttgcgccact acatcaagtt gaatttgcat gcctacagtt atgaaaaaaa
    13801 gccctaaaag caaatctcta aatgggatca agtccgcttc tattttgtgt ttatattttg
    13861 tttctgctat caaagcacct gctataaaag cacccaaaga ataagaaaat ccaaaataat
    13921 ttgctaaaaa acttgctcca ataaccataa ataaaacagt actaataaaa atttcctgag
    13981 aagaagtgtg gataatgagt ctaaaaattc tatccactag atatttacct atgaaaaata
    14041 ataaagtgat taaaataagt gctgaaatta aactggtaaa aaggagtttt tctatgtttt
    14101 gattgttgga tgaaaaaata tctacaagca aaagcaaagg aataacggct atatcttgaa
    14161 aaagcaaaat tcccaatgct tttctgccat attgctcatt tatatcgcca ttatcattta
    14221 aaattttaag caccactgcg gttgaagaaa gcgctagtgc aaagcctact atggtagcgc
    14281 ttttatctcc aagtcctaaa attcctatag caagtagcat aaaaacaaag ccacaagtaa
    14341 gcatctgcaa agagccgttt aaaaaaactt cttgtttcat tgccattaaa tgcttaaaag
    14401 aaaattcaag ccctatggta aacattaaaa acactatacc aaattcggct atatgagtga
    14461 tttcgccttt gccacttaaa tgataaattt cagaaatgat ttctccagca gctatatatc
    14521 caatgatagt tggaatttca aattttttaa atatgacatt taaaactata gctatagcaa
    14581 cggtgattaa aaaaatttct aaaaaattat ccattatttt tattttttct cataaaaaat
    14641 caaatcaaag ctatttttat gcttaacaac ggctttacta gccgcttctt tatcttgttg
    14701 tttgcttaat tctaagcgta gttcatcaat taaattttca aattcgtgaa gttggttttt
    14761 caattttaag ataacatcta ctccagcaag attgattccc atgtctcttg ttaaacgcaa
    14821 tataagttta atacggtcaa tatctctttg agaataaagt cttattttgc catcggttct
    14881 acttggctct atcaatcctt ctctttcgta ttgccttaag gtttgtggat gtatgcttaa
    14941 aactttagcc acaacactga ttaaatatac aggttcatca taatgctgtt ccatatttta
    15001 ttcctttctt taaggtaatt tttcttttaa gagttctata aatttttcat caagggtatc
    15061 taaatttggc aaaacaacat ttaaaatcaa atacatatcc ccataaatat cactttttct
    15121 attttgcaca ccatagcctt ttaaacgaat tttttggtta ttttttgaat taggcgttat
    15181 gttaattatt gcttcttcct tgccttcttt gagtgttttt atatttattt ttccaccaaa
    15241 aagtgcagtt tttaaagaaa tatcaacctt ttgatataaa tcatcatctt ctcttgtgta
    15301 aataggactt tcttctattt ttacaataat gattaaatct cctctagctc catttctgct
    15361 ttgttttcct ttagagcgaa ttcttagttt ctcgccttct tttataccat gtggaatttt
    15421 aaatttaatg gtttcgcctt gaaaattaaa actatgttcc ccgcctttaa cagctttttc
    15481 gaaaggaatg tgaagctcta gattgctgtc taaaatttct tcttcaaaac ctccaaatcc
    15541 tccaaaacca ctgctaaagc cttttgaaga aaagccgtta aaaccccctc ttgagcgtcc
    15601 accaaagcct cctccaaaga gatcttttaa aatatcgtcc aaatttaccc caccagtatt
    15661 tcttgaaaaa tcatgaaaac tttgtccacc aaacatagaa tcgccgtatt ggtcatactg
    15721 agctcgtttt ttttcgtcac ttaaaatttc ataagcagca ttaatttctt taaatttttc
    15781 ttcagcacct ttttctttgt tgatatcagg atgatatttt ctagctaggc gacggtaagc
    15841 tttttttatt tcatctgcac tagcgttttt gctaactcca agagtttcgt ataaactatt
    15901 catgttatat ttccttaaaa atttttactt gattatatag aggattaaat tataacataa
    15961 actttagcct aagtcaatca agttttataa atttttatca ctcaaggttt tatttacaat
    16021 tttgtaaatt ttcggtttta tactatgaag acagtaaaat attttacgag ataatttatc
    16081 tttaagaaca aaaggaaatg aaatgaaaaa gattttttta tcattaagtt tagcaagtgc
    16141 tttatttgct gcaagtatta attttaacga atcgactgca acggctaatc gtgtgaatcc
    16201 tgctgctgga aatgcagtgc tttcttatca tgattctatt aaagatgcaa aaaaatcagt
    16261 ggttaatatt tccacctcaa aaactattac aagagcaaat cgtccaagcc ctttggatga
    16321 tttttttaat gatccttatt ttaaacaatt ttttgatttt gatttttctc aaagaaaagg
    16381 aaaaaatgat aaagaagtgg tgagttcttt gggatcaggg gtgattattt caaaagatgg
    16441 ttatatagta acaaataatc acgttgtaga tgatgctgat acgattacag tgaatttacc
    16501 aggaagcgac atagaatata aagcaaaact tataggtaaa gatccaaaaa cagatttggc
    16561 tgttataaaa atagaggcta ataatctttc agctattact tttacaaatt ctgatgattt
    16621 aatggaagga gatgttgttt ttgcacttgg aaatcctttt ggagttggtt ttagtgttac
    16681 aagtgggata atatctgctt taaataaaga caatataggt ttaaatcaat atgaaaattt
    16741 tatacaaaca gatgcttcta tcaatccagg aaattcaggt ggagctttgg tggatagtcg
    16801 cggatattta gtaggtatta attcagctat tctttctcgt ggtggtggaa ataacggcat
    16861 aggttttgcc ataccttcaa atatggttaa agatatagct aaaaaactta ttgaaaaagg
    16921 caagattgat agaggatttt taggtgtgac tattttagct ttgcaaggtg atactaaaaa
    16981 agcttacaaa aatcaagaag gagctttaat cactgatgtt caaaaaggtt caagtgctga
    17041 tgaagcaggg cttaagcgtg gagatttagt tactaaagtt aatgataagg ttataaaaag
    17101 tcctattgat cttaaaaatt atataggaac tttagagatt ggtcaaaaaa tttcattaag
    17161 ttacgaaaga gatggagaaa ataagcaagc aagttttatt cttaaaggcg aaaaagaaaa
    17221 tcctaaaggc gtacaaagcg atttgattga tggtttgagt ttgagaaatt tagatccaag
    17281 acttaaggat cgtttgcaaa ttccaaaaga tgttaatggt gttttggttg atagtgttaa
    17341 agaaaagagc aaaggaaaaa attctggttt ccaagagggt gatattatca taggtgttgg
    17401 acaaagtgaa attaaaaatt taaaagattt agaacaagct ttaaaacaag ttaataaaaa
    17461 agaatttacc aaagtttggg tatatcgcaa tggttttgcg actttgcttg tgcttaaata
    17521 aaaataacgg aaggattttc ctttcgttat aaattttagt ttaaaattaa aattaagttt
    17581 aaaataaagg aaaactatga caaatattct tatgatagaa gatgatttag aattagcaga
    17641 aattacagct gaatatttgg aaaaatttga tatgaaagtt gatatagctc atgaacctta
    17701 tataggtctt tctaagcttg cattaaaaga atatcagctt atcattttag acctttcttt
    17761 gccagggctt gatgggcttg aagtgtgtga agagattcgt aaaaagtatg atacgcctat
    17821 tattgtttca agcgcaagac atgatattac agataaggtt aatgctttag agcttggagc
    17881 agatgattac ctaccaaaac cttataatcc aaaagaatta caagcacgta ttaaaagtca
    17941 tttaagacgt atttcaaata caaaaagcgc catagcaaaa agtgtaaaag atcttgttta
    18001 tgatcaatat aagcatatta ttaccatgaa aggacaagag cttactttaa ctaatgctga
    18061 atttgatatt ttaagctatt tgattaaaaa agagggtgga gtggtaagtc gtgaagagct
    18121 tgtttataat tgttcttcta ttagtgagga ttctagtaat aaaagtatag atgttattat
    18181 cagtagaatt cgtcaaaaga tgggagatga tccaaaaact ccaaaatata ttcactctat
    18241 acgtggaata ggttataagc ttactcaatg aataaatctt cgatttttta tactataact
    18301 tttattttta tttttgctgg ggttagtgtt atacttggct ttttgtggct tatagaatac
    18361 gatcagcaaa attatactag agaattaaac acaaaatatt ctttgatagc taatgcaagg
    18421 ctcttaaatt ttgcaggagt tatcagtgaa aaagaatttg aagagcagac aaaaaattat
    18481 aataaaatgg atgagataac agaagcaaag cagatccgta aaattctttt tagaggtgat
    18541 gttttagcta gggttgaggt taacaatggc ttaatcgaga ttatttctta taatagacag
    18601 gtgtatttaa atattattta tgatggaaag gtttatcttt ataaggatca agattatcaa
    18661 acctataggt attttattat caaagctata gctgtagctg tgatttgtat tcttgtattg
    18721 ctttatattt atatatttaa aaaattaaaa ccacttaaaa gacttaaaaa acaaattgat
    18781 aaatttgccc aaggaaagct tggtgatata gaagatgtaa gcactggggt ggatgaaatt
    18841 tcacaagtaa gtgaagcttt ttatcaagct attgttcaaa ttcgaaagtt aaaccaatct
    18901 cgtcagtttt ttttaagaaa tattatgcat gaactcaaaa ctcctattac taaagggctt
    18961 ttaactttag aaatgataga agataataaa tataaagagc gcttaaatgg ggtttttact
    19021 agacttgaaa ttttaattaa tgaatttgct gctattgagc aaattacttc aggggctgct
    19081 tttataaata gaaaaaaata caatatttta gatgttttag atgaagccaa agaaattgca
    19141 atgcgagatg atagcaatat acgtattttt atggaagaaa gtttttttgt aaatgtggat
    19201 tttaaacttt ttactacggc gattaaaaat atgatagata atggtattaa acattctgaa
    19261 gatgggtttg tgcaaattga tattatagat gattatattt gttttaaaaa tcgtggtcct
    19321 gagcttaaca atactttaga atactatact caagctttta ctcaaggatc aaaacaaaaa
    19381 tcaagttttg gattagggct ttatattgta aatactattt tagaaacaca tggaatgaag
    19441 cttgattatt tatatgaaga tggggtaaat ttgttttatt ttagaaattt aaaaagtgtt
    19501 attgttaagg agtaaattaa tttttttaca taaaaaatgc atttttgtga aaaaaccctt
    19561 gacaaagttt tttaatttca ctataatcac attttacttt taaatattcc ggattagctc
    19621 agcggtagag tagtcggctg ttaaccgatt ggtcgtaggt tcgaatccta catccggagc
    19681 cactttttta actccatttt taatattcat aaatgtattt taatataaaa aattaataag
    19741 tctttatcac aaaaaaattg tgataaagtt ttttattttg tttgtttaag atttttgaca
    19801 attttatcta tttttttact tgccttttga taatccccat ctttaagttc ttctagggca
    19861 ttaacagcaa aagaaaaatc ttcaacttca ttaagataag cctctatggc ttcttttact
    19921 atggttgatt ttggtttaga aagattttta cttaaattat ccaaacgctc cttaagctct
    19981 aaaggcattc taaaagaata agtttttaca ttgcgtttca ttttatcctc cttaagaata
    20041 ttttttgtaa aattttatag cttgtttaca agttttacaa gtaaatttat gaccttgtaa
    20101 ttctattttt tgatgaatgc tataaggaac atcgtgaatt ttaccaggac aattacaggt
    20161 ataaagataa aattgtggat gctcattatc ttcatcttct gctgcttcaa agctaatatc
    20221 gccaccatca tctgtagaca aagaagaact tctccatttt tcaactttca tgtcttcata
    20281 tagtatgtgt tctaaaagcc actttttagc cactatataa agtttttctt taagatcatt
    20341 ggttgatttg atatctttga ttaaattaat catggtttgg atgatttctt tatgtatttt
    20401 tcgatgttct tctaaatttg gatagcctat tagctgcatg tatttttctt catcattaaa
    20461 gtgatctttc atataattaa aaaattcagc caaaagttct ttgacttcat ttttacttac
    20521 agatctatct gatacaactt caacttttgc agcaagttta aaaagctttt tatgctgctc
    20581 atcaatttta gcattgtgca cactatagct gttatcccat tttggaagca ttttaactcc
    20641 ttaaggaaaa atttatttgt atgaaaggat tatagataaa aataaattaa ataaaaatga
    20701 aattttatta aataattgat aagaattttg atacaatgat atatatttaa gagatttgaa
    20761 gttagaaaga tttaaattat ggctgctaaa attttacttt tagaagatga tttgagcttg
    20821 agtgagatca ttgaagagtt tttaaacgat gagggatatg aagtattttt atgcgataat
    20881 gcgcaagaag ctttagatat ggcttatgaa agatattttg atctttggat tttagatgta
    20941 aaagttcctt taggagatgg attttcatta cttaaagaat taagaaaaag cggaaagcaa
    21001 actccagcaa ttttcatgac ttctttaaac acaacaaacg atttaaaaca aggctttgac
    21061 gcaggttgtg atgattatat aaaaaaacct tttgaacttg ccgagttatc tatcagggtt
    21121 aaagctttgc ttaaaagagc tttttcacat aaaaatgaag attttgaaga tttaggagat
    21181 ggatttagat ttgaatttac tacacaaatt ctttaccata ataataaagc cttgacttta
    21241 ccgagtaaag aaattaagct tttgtcttta ttgcttaaaa ataaaaacaa ctttttaagt
    21301 acagagagaa tttttgaaga actctgggat tatgatgagg agcctagtga gctaagttta
    21361 agggcttatg tgaaaaattt acgtaaaatt ttaggaaaag aaaaaattat aaatcaaaga
    21421 ggcaggggat attgctatgg ctaaaaaagt cattaggcaa attttattaa tctacctaac
    21481 aactacaggt atttttttaa ctattttttt tgcattatgg tatcaaaaat tatatgaaga
    21541 attagttgtt ttaaagggtg ccactttgag agaaaatcat agaaacattg ttataagcat
    21601 cttaaattct cgttttaccc ctatagatat aagtgcaaaa aatattgctc aaagcacagc
    21661 actaaaattt gctatatttg atgctaaaaa gattgttttt agtaatatag attttgattt
    21721 aagaaaggca aagatagagc ttaaaggtag aggtatttgt gataataagg tttttttcct
    21781 tgctcctatg agtgcagatc attatttttt aagacatgct agcaatgaag aagtaaatac
    21841 taacgatggt ttgcaaattt taatacaggg tgaagatgtt ggcaaagatc ttttttggat
    21901 tagaacgaaa gtttttagtt ttgctattat ggctttttgc atattgggtt taatatctta
    21961 tattttagta aaaattgctc taaagccttt ggaggataaa atcagcacac taaatcgttt
    22021 tattaaagat tcaactcatg aactcaatac cccattaagt gttattttga tgagtataga
    22081 acaacttgag catcaaaatt taggagataa tactaaattt acaaggatta agcttgctgc
    22141 aaaaagttta tctcaagtgt actctgatct tgttttttat aatttcccta ataccttaga
    22201 aacagaaaaa caaaaatttg atttaagaat actacttgaa gaaagattgg aatattttaa
    22261 agtatttttt gagcaaaaaa aaattacact aaagcttgat ttaaatcaag caaatatttt
    22321 tgctcctaaa agtcaaattt ctaaattgat tgataatctt ataagcaatg ctattaaata
    22381 caataaaaaa ggtggagtaa tttctataat tttaaaagcc aattttttaa gtattgcgga
    22441 tacaggttgt ggaatttcaa agtcaaattt aaatcatatt tttgatagat atacaagatt
    22501 taataccgat caaggaggat ttggtatagg gctttctttg gtaaaaaaag tttgtgatga
    22561 taatgatatt aagattattt gcgaatctgt agaaaatcaa gggagtgttt ttaaattaaa
    22621 ttggtaatca gcaaggaaaa tccttgctga taagaggtta gagcagatat tacatcattc
    22681 ctcccatgcc acccattcct cccataccgc tcatatctgg catagtaggt ttatcttctt
    22741 taatttcact aattgttgct tctgtggtta aaagcatact agctacagaa actgcattga
    22801 gtaaagctac tctttctact ttaacaggat cgataattcc actttcaagc atattaacat
    22861 attcaccttt tgcagcatca aatcctgtgt tttcatcttt agcattttct acgctattta
    22921 caaccacacc tgcatcaaat cctgcatttt cagcaatttg tcttaaaggt gctcttaaag
    22981 ctctttcaac gatagctgcg ccaattgctt catcaccctg tagatcaagt ttgattttag
    23041 cttttgcttt gataagcgct gcaccaccac cgattactat accttcttca actgctgctt
    23101 tggtagcgct taaagcatcg tcaacgcgat cttttttctc tttcatttca gtttcagttg
    23161 ctgcacctac tttaataact gcaacaccac cacttaattt tgcaagtctt tcttgtaatt
    23221 tttctctgtc ataatccgaa gttgtttcag caatttgtgc tttgatttga ttgactctcg
    23281 catcaatatt tgctttttcg cctgcaccat ttactatggt tgtattgtct ttatcgatga
    23341 ttacactaga agcttgtcca agatcttgta tagtcgcact ttcaagagtt cttccaagtt
    23401 cttcagaaat cacttctcca cctgttaaaa tcgctatatc ttcaagcata gctttccttc
    23461 tatcgccaaa acctggagct ttcactgctg aaatattaag aacaccgcga agtttattta
    23521 caaccaaagt tgcaagcgct tcaccttcaa tatcttcagc gataattaaa agtggtttgc
    23581 ctgttttttg aatttgttct aaaaccggta ataaatcttt taaatttgta atttttttat
    23641 caaaaagcag gatataaggg cttgaaagct ctactgtcat tttttctgca ttagtgataa
    23701 aataagggct taaataacct ctgtcaaatt gcataccttc aactacattt aattcatcat
    23761 tgattgattt tgcctcttca acagtgataa caccatcttt gcccactttt tccatagcat
    23821 cagcgattaa atttccgatt ttttcatcag agttggctga gattgtagca acttgtgcaa
    23881 tttctttttt atcttttact tcgcgagaaa gttttttaag ttctgctact atagcttcgc
    23941 aagctttatc cataccgcgt tttacctcga taggatttgc acctgctgtg atatttctta
    24001 aaccttcttt gaaaattgca tgagctaaaa ccgttgcagt agttgttcca tcgcctgctt
    24061 gatcagctgt tttactcgct acttctctta cgagtgaagc acccatattt tcaagactat
    24121 ctttaagctc tacttcttta gcaacactta cgccatcttt agtaatgctt ggagcaccaa
    24181 agcttttttg gattaaaaca ttgcgtcctc ttggccccat agttactttt accgcgtcat
    24241 taagtttttt aacgccctca taaagtttat ttcttgcttc atctgaaaaa ataatttctt
    24301 ttgccatttt ttatccttat tttataaatt attttaaaat tcctaagata tcatctaaat
    24361 ttaaaactaa atattcatta ttatcaagtt taatttctgt tccaccgtat ttagcaaaca
    24421 cgattttatc accatttgca atatcagtga tttctttact tactgctact acttcaccca
    24481 ttaaaggctt ttctttagca ttatctggta taattatgcc tgaggctgtt gttttagttt
    24541 cttctacgcg tttgactaga acacgctttc ctaaaggttg aaaattcatt tttgtccatc
    24601 cttaaaaata ttgattttag cactctttta tttagagtga taatatcata ctataaaaaa
    24661 tgaattttgt caatacttta aattaaaata tttataaaag tttagtttta tagactaaag
    24721 ttattttata aaataaacta aaggataaaa atgaaaaaga ttttttatgg agttatagct
    24781 tttgttgttg tgcttttgat tgctatttat accatacttt tcacaagttt tggtaataat
    24841 atagtggcaa atatagcgca aaaaaagatc aaagaaagtg cgggattaga tgtaaatatc
    24901 acgcatttta atttacgttt ttcaagcctt gaattgcaag caaatatcgc aaatatggca
    24961 gattttaatc ttcaaggagc tttgagtcct tttaagcttg gatttgatct tgactatctt
    25021 atttctttaa agcaaaatta tgctaaaaat ttaggtttaa atttaaatca aaacctttct
    25081 tttggcggta aaattcaagg caaggcaagt gattttactt tagatggaag gggttattta
    25141 ctaggttcaa atgtactttt aaatgcgaga atgtataatt acagccctat cgctttaaat
    25201 ttagatgcac aaaatcttaa gatagaagaa atacttcatc ttttatctta tcctagttat
    25261 gctaaaggtt ttttaaatgc tcaggcaaaa atttcagcac agaatttaaa acctgatgga
    25321 aatattatca taaagcttga tacaagctat ataaactacg aggcgataaa aaaagatttt
    25381 tctttagact tgcctttaaa ttctaatcct aaagcagaaa ttttagccaa tgttaaagaa
    25441 gataagattt atgctgtaag taaaatttac aatgattatc ttaacttaca aacccaaaaa
    25501 actctttatg atatgagtaa gaatatttta agtactgatt ttaatttaaa tattccttct
    25561 cttgcaaagc ttgaaaaact tacaaaaact agattaaatg gtagtttggg cgtgataggc
    25621 gaaacaagtg ttgtaaataa tgccttatca agtttaaatg ctcaagttat cggacttggt
    25681 ggagaggtaa aggcaagttt gaaaaataat aaaatttttg cagatattaa tgaagcaagt
    25741 ttggaaaaat tattagctct tgcaggatat ggagctttag tttctggaaa tttaaatgct
    25801 aaacttttaa atgcggattt ggatttttct aatttcgatc ttgaggcaaa aataaacaat
    25861 gcaaagatta acaccaatga gcttaaaaaa attgctaaaa tagaacttcc aaatacaatt
    25921 tttagtcttg atgctaaagc aaatgcaaaa aatagtaata tttcttacaa tgctttactt
    25981 gcttcaaatt tacttaatat caaaaaactt caaggaactt ataatttaaa aaatagtgag
    26041 ttaaatacag atttaaatgc ttttattgat gatttgtctc agtttagtgc tatagcggga
    26101 caaaaattac aaggtaaggc agatcttaat gcaaaagctc atattatagg tactcaaata
    26161 caaaatttaa atgcaaatgc aaatttggca gatggcgtaa tcaaagctga ttcaaatggt
    26221 aaaaaacttg atttgaacat tgataaactt gatttatcta aactttttgt tatagcaggt
    26281 atgccaaatt atgccagtgg ggttgttaat gcaaaagtta atttagataa tatcgatttt
    26341 aacaacctta atggtaaagc aaatttagag gctaaaggca ttttaaatgc tgcaacttta
    26401 agtaaaattt taaataaaaa ttttccaaac aatacaagtt atgatttaaa taccaaaatt
    26461 aattttaaaa acaatatcgc tcaatttgat tctgttttaa attcatcttt agctgatctt
    26521 acaaaactac aaggaagttt tgatataagt aagatgc
//
LOCUS       DARBAR010000009        24750 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.009, whole genome shotgun sequence.
ACCESSION   DARBAR010000009 DARBAR010000000
VERSION     DARBAR010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24750)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24750)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24750
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.009"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..302)
                     /locus_tag="SB815_000256"
     CDS             complement(<1..302)
                     /locus_tag="SB815_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEG0906031.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKA"
     gene            complement(289..1671)
                     /gene="der"
                     /locus_tag="SB815_000257"
     CDS             complement(289..1671)
                     /gene="der"
                     /locus_tag="SB815_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEG0906032.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            1773..2705
                     /locus_tag="SB815_000258"
     CDS             1773..2705
                     /locus_tag="SB815_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG0906033.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIVYLLKRSKAHKEGGYFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLTAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            2702..3517
                     /gene="kdsA"
                     /locus_tag="SB815_000259"
     CDS             2702..3517
                     /gene="kdsA"
                     /locus_tag="SB815_000259"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEG0906034.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKINIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQRNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            3514..3978
                     /locus_tag="SB815_000260"
     CDS             3514..3978
                     /locus_tag="SB815_000260"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEG0906035.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGLTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            3978..4376
                     /gene="nusB"
                     /locus_tag="SB815_000261"
     CDS             3978..4376
                     /gene="nusB"
                     /locus_tag="SB815_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEG0906036.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYHGILDNLNNIDETLNSFLNDNQITALGHIERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            4373..5212
                     /gene="pyrF"
                     /locus_tag="SB815_000262"
     CDS             4373..5212
                     /gene="pyrF"
                     /locus_tag="SB815_000262"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEG0906037.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKIHDIPNTMADACEEISKLGVDMINIHASAGKIAMQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETSDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
     gene            5209..5994
                     /locus_tag="SB815_000263"
     CDS             5209..5994
                     /locus_tag="SB815_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906038.1"
                     /translation="MNYQQLECDYFNLYNQFLSVDFQISLFEKDHKGLIKDFIFFYYQ
                     ILKQKDLSYLLEVRNKISLKVYNYMQEHSTSPKDLSLICLRENKHIEFFQIFYKALAY
                     FVAFRKKLDGEQKIKNLISNINDCFGYHFLNSDFNNLQNFQKSDLFTLPEKHLKYFHF
                     AMIHLCFMVLNPLNFKDSNRHLDKAINYLVDGTFEIYELIFKEYFLLFSKDKELKDEL
                     RKLKKLEFKILMQETSKIKLLNHYKEFCEEIFYNIELEKITQN"
     gene            6050..6943
                     /gene="msrP"
                     /locus_tag="SB815_000264"
     CDS             6050..6943
                     /gene="msrP"
                     /locus_tag="SB815_000264"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HEG0906039.1"
                     /translation="MIITPENLYKKRRDFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFAKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            6943..7515
                     /locus_tag="SB815_000265"
     CDS             6943..7515
                     /locus_tag="SB815_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HEG0906040.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFIKEAYIYTGIFAL
                     IFLNLSLLFSLLKFKKTKNYPKILGIFAAFWAILHFLNYFIFDRNAQILRLFDDISHR
                     LLEASGFIAFLIIFLMLLSSFKIFKKLSKIRKLGYLCLVLASYHYFLTPKIPMFWEWS
                     ALIIALFYFIVRYTKTLKKLKSNNLTFIKT"
     gene            complement(7480..9192)
                     /locus_tag="SB815_000266"
     CDS             complement(7480..9192)
                     /locus_tag="SB815_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0906041.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFARIQLYERLSFIQKSAYNS
                     EIKNQIKLYEKHIKERLKKSKFYNVLADIFKEYNLEHKEQIIFLALLKEEYALSNESS
                     ISREMNSLLSLISENDLERHKNKKLLQENAPLLNLIEYDEYLNAFGDISKSFFIIDEI
                     LQRIINFEPKQSKKIKIESVLKDQDIFELIEPSTDINDIIMPENTKELLENILKQQDK
                     KVLERLHSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKW
                     VGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVDGNSGSDKMHNQMQNIF
                     LEQIERFSGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFKDRLKIWEKFLPKKALFE
                     KDFDINILSNYELSGAQILMVVKNTALKVAVSQDGVFKMQDFIESIQKELNSSFDKSK
                     IVGF"
     gene            complement(9192..10016)
                     /locus_tag="SB815_000267"
     CDS             complement(9192..10016)
                     /locus_tag="SB815_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906042.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIIDDINGNLEIPLVKINDFWQDECKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKGVFSFEQIHQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTENQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
     gene            complement(10027..10503)
                     /locus_tag="SB815_000268"
     CDS             complement(10027..10503)
                     /locus_tag="SB815_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906043.1"
                     /translation="MKHCLALCFVFFLCACSVKNQNFSSQSLMVLIASPMIKINDTAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINTVCYDKQVFNQKFFKNVYYDDILSDIL
                     KANPLWQGKNLEKTDCGFEQNLKAKNYEIFYQVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(10512..11003)
                     /locus_tag="SB815_000269"
     CDS             complement(10512..11003)
                     /locus_tag="SB815_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEG0906044.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKVIKDSKLKVNSSIRGEEIRVAAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(10993..11928)
                     /locus_tag="SB815_000270"
     CDS             complement(10993..11928)
                     /locus_tag="SB815_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEG0906045.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(11931..13100)
                     /locus_tag="SB815_000271"
     CDS             complement(11931..13100)
                     /locus_tag="SB815_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HEG0906046.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVINNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLSHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(13110..13715)
                     /locus_tag="SB815_000272"
     CDS             complement(13110..13715)
                     /locus_tag="SB815_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HEG0906047.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(13835..14047)
                     /locus_tag="SB815_000273"
     CDS             complement(13835..14047)
                     /locus_tag="SB815_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEG0906048.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            14207..15583
                     /gene="ccoG"
                     /locus_tag="SB815_000274"
     CDS             14207..15583
                     /gene="ccoG"
                     /locus_tag="SB815_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEG0906049.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFSLPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYERQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            15570..16202
                     /gene="cmeR"
                     /locus_tag="SB815_000275"
     CDS             15570..16202
                     /gene="cmeR"
                     /locus_tag="SB815_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HEG0906050.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYNKDRHLANWIENNQQNFSYNILMGFFKQQNNSYMKKNAKK
                     LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            16297..17400
                     /gene="cmeA"
                     /locus_tag="SB815_000276"
     CDS             16297..17400
                     /gene="cmeA"
                     /locus_tag="SB815_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HEG0906051.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQNGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            17400..20510
                     /gene="cmeB"
                     /locus_tag="SB815_000277"
     CDS             17400..20510
                     /gene="cmeB"
                     /locus_tag="SB815_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HEG0906052.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPSSLVPEED
                     QGLMIGIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLKDWKDRNVSADEIAMELNKKFAFDRNASSIFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKKR"
     gene            20516..21994
                     /gene="cmeC"
                     /locus_tag="SB815_000278"
     CDS             20516..21994
                     /gene="cmeC"
                     /locus_tag="SB815_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HEG0906053.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYKSAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNI
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
     gene            complement(22017..22268)
                     /locus_tag="SB815_000279"
     CDS             complement(22017..22268)
                     /locus_tag="SB815_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906054.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINNTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKAYEITDADLDKDF"
     gene            22397..23743
                     /locus_tag="SB815_000280"
     CDS             22397..23743
                     /locus_tag="SB815_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG0906055.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPEEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKNKGFDFTSMYVGGGTT
                     LIDEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQNEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
     gene            complement(23740..24192)
                     /gene="hemJ"
                     /locus_tag="SB815_000281"
     CDS             complement(23740..24192)
                     /gene="hemJ"
                     /locus_tag="SB815_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HEG0906056.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(24176..24646)
                     /locus_tag="SB815_000282"
     CDS             complement(24176..24646)
                     /locus_tag="SB815_000282"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HEG0906057.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
BASE COUNT         8723 a         3909 c         3512 g         8606 t
ORIGIN      
        1 gcttttaaat aaatacaaaa acctgctttt tctaaatttg aaacattaac aaaaccccca
       61 cctgtagcaa tacaagcttt ctcacaagaa ctaaaaaaat cagccatttt ttgctcttgt
      121 tctctaaaaa aattttcccc tttttgttca aaaatttcac tgactttttg attaaatttt
      181 tgttctatta aaaaatcact atctaaaaaa acaagatcta aatccttagc taaagctctt
      241 gctaaagtgc tttttccaga acccataaat cctataaaaa cgatattttt agctttcatc
      301 attttcttta ctgccctttt tacgcgaagc aatcactaaa ggcacacctt caaaattaaa
      361 ttcttttctg atttgatttt gtaaataacg cttatagcta aaatgcaagg ccttaggacg
      421 attcataata agtgcaattt ttggcggtgc taagtcatat tgtactgcat aataaatttt
      481 aaccaatttc ccataatcat gcggcaaagg atgtgctctt gtggcatttt ctatcaaggt
      541 attaagctta gaagtttgga ttttttgagt gaaattttca aaaatttgca aaattttatc
      601 gagtaaaaca tgcacccttt ttccacttaa agctgatacg ctaatcacgg gtgcgtaagc
      661 tagaaattta aaacgatcaa gacgcaattc ttttacagtc ttatcaaaat ccatctcact
      721 tttatcccat ttatttaaaa caataatcac acccaaataa tgcttagcca caagcccagc
      781 aatgcgttca tcaagctcgt taaagccctc atgcgcatct aaaaccaaaa gtgctatttg
      841 agaatgagat aaaatttttt ccgtgcgatt tagggcaaag cgttcgagtc cttgaatttt
      901 accccttttt ctaatacctg cagtatcaac aaattctatc actttatctt tatgaactac
      961 actttcatta acaggatcta tagtagttcc tgcaatagaa cttacaacac tgcgttcttg
     1021 tttaaccaaa gcatttaaaa gacttgattt tccaacattt acacgcccta caatacccac
     1081 tctgatatga ttttgatcga cttctttaaa ttgaaattct tttccttctt cataatactc
     1141 taaaaaatct tctaaatttt cttcttcatc ggggattaaa aactcttcat gtaaaaattt
     1201 ttcaagccat tcataaagtt catctaagcc tacattatgg gttactgaaa gattaaagat
     1261 ttcctttacg ccaaaatttg caaactccca agccctttct tcatcttttt tattatctac
     1321 tttattaatc actaaggcta taggttttcc aagttttttt aaagaataaa aaaactgtct
     1381 atcctcatca tcaggcgcta atttcccatc aactagataa agtatgatat cgctttcttt
     1441 agctactttt aaagtgtttt ttttcacatt tttaaaaagt tcatcacttt catcaagccc
     1501 tccactatca ataagcatgg ctttttttga atgaatatga atttgcgttt tatttgtatc
     1561 tctagttgtg cctgaaatat cacttgtaat agctattctt tgtcttgcca ttctattaaa
     1621 aaggcttgat tttcccacat ttggcttacc tataagtata atgctttgca tttttttcct
     1681 agaaaattat atttttaaaa ttatataaaa tttggcttaa tattaagcaa aaaaagacta
     1741 gaattaaccc agattttagt caaggaaaaa aaatgctaaa agtaatcaag cataatttag
     1801 gaatttattt catgatttta gcatgtttgg attttgcact tatgggagct tgtgcaaaaa
     1861 ttcttagcaa ggaaatgagt tctatagaaa ttatgttttt tagaaatatc ataggaattt
     1921 ttttcatagt ctatctttta aaacgatcta aggcacataa agaaggggga tatttttggc
     1981 tcttggtatt tcgtggagta gtaggcacgc tttcactata tatgtttttc tataatgttt
     2041 caaatattac actaggtgga gcttttgctt ttcaaaaaac tgctcctatt tttattactt
     2101 taatagcttt tgttgttttt aaagaaaata ttggcatcaa aggctggata ggaattttaa
     2161 tagcatttgg tggagtgctt ttaatcgctc agccttgggc tcataattta aatcattcag
     2221 gctttgattt aaaaaattca gttataggta ttacgagtgg atttttagcc gctttagctc
     2281 ttacaagtgt aagagaactt agaaaatctt acactacaga acaaattgcc ttttctttta
     2341 tccttttagg aaccttaatg cctttaattt ctatgatcag tgctgaattt tttgaaccac
     2401 agcatcttga ttctttacat ttagatttca ttctagcacc ttttgtgatg ccaagtctta
     2461 cagcttggct tatcattgcc attatgggaa ctttaggcac catttatcaa attcatgtca
     2521 ctaaagctta tggtatcgct aaacaagcag gagtggttgc cggagttagt tatcttgatg
     2581 tagtatttag tatgatagtt gggataattt tgggagataa tttaccaagt actatggttt
     2641 ttttaggtat aataggcatt atttttggtg gattaatttt agttaagaac aaaggaaaaa
     2701 aatgaaaaaa atgatactca ttgctggtcc ttgcgtgata gaaagcaaag atttgatttt
     2761 taaagttgct gaacagttaa aaaattttaa tgaaaatcca aatatagaat tttatttcaa
     2821 atcaagtttt gataaggcca atcgcacaag tattaattct tttcgaggtc ctggtcttga
     2881 agaaggatta aaaattttac aaagcgtaaa agatgaattt ggtatgaaaa tcttaaccga
     2941 tatacacgaa agcaatcaag caaaccctgt aagtgaagta gctgatgtct tgcaaattcc
     3001 tgctttttta tgtcgtcaaa ccgatttact tgtagccgca gcaaaaacta aggcaaaaat
     3061 taatatcaaa aaaggacaat ttttaaaccc aagcgatatc aaatacagcg ttaaaaaagt
     3121 tctacaaacc cgtggtatag aagatgaagg ctatgaagct gctcaaagaa atggtgtttt
     3181 tgtagctgaa agaggggcta gctttggcta tggaaattta gtagtagata tgcgttcttt
     3241 agttatcatg cgtgaatttg ctccagttat ttttgatgct acccatagcg tacaaatgcc
     3301 aggggctgca ggtggaagta gcggagggaa aagcgaattt gtagaacctt tagcaagagc
     3361 ggcagcagcc gtaggcatag atggcttttt ctttgaaaca catattaatc cttgcgaggc
     3421 tttatgcgat ggacctaata tgcttaatct tacacgcctt aaaaattgcg ttaatacatt
     3481 actagaaata caaaatatca taaaggaaaa caaatgaata ttattgaagg aaaattaaat
     3541 ttagactcaa atacaaaaat tgctatcatt aatgcaagat ttaatcatat catcacagat
     3601 cgccttgtag aaggagcaaa agatgctttt ttaagacacg gaggcaaaga ggaaaatcta
     3661 agccttatac ttgttcctgg tgcttttgag cttccgtatg cattaaaaaa agctatagaa
     3721 agcaaaaaat ttgatgcaat ttgttgcgta ggtgcagtaa ttcgtggctt aactccgcat
     3781 tttgactatg tttcagcaga aaccaccaaa ggcatagcca atgtgagttt aaatcataat
     3841 atccctgtaa gctttggtgt tttaactaca gatacaatag aacaagccat agaaagagct
     3901 ggaagcaagg caggtaataa aggctttgaa gctatgacaa ctgtaatcga gatgttaaat
     3961 ttaagcaagg agctttaatg gcaacgcgtc atcaagttcg ccaaagcgtc atctccttac
     4021 tttatgcttt tgaattaaat tctcaaaaca acgtttttgt agatgaaatt ttagatgaaa
     4081 aaaaaatacg caatgaacaa aaaaatttta ctttaaattt atatcatgga attttagata
     4141 atttaaacaa tattgatgaa accttaaatt catttctaaa tgataatcaa attacagctt
     4201 taggacatat agaaagagct atactaagac ttggagctta tgagttactt tttaccgata
     4261 ctcctagcgc cattgttatc aatgaggcta tagaacttgc caaagaactt gccaatgaca
     4321 attctccaaa atttataaat ggagttttag atgccttaat aaaggctaaa aaatgaagct
     4381 ttgtgttgca cttgatcttt ctacaaaaga agaatgcttg caacttgcca aagaattaaa
     4441 aaatttagac atatggttaa aagtaggttt aagagcatat ttaagagatg gctttaaatt
     4501 catagaagaa cttaaaaaag ttgatgattt taaaatattt cttgatctta aaattcatga
     4561 tattcccaac actatggcag atgcttgcga agaaatatca aaacttggtg ttgatatgat
     4621 caatatccac gcaagtgctg gaaaaatagc catgcaagaa gttatgacac ggcttagcaa
     4681 attttcaaaa agacctttag ttttagcagt ttctgctctt acgagttttg atgaagaaaa
     4741 tttctttagt atttatagac aaaaaatcga agaagctgta attaattttt caaaaatatc
     4801 ctatgaaaat ggacttgatg gtatggtatg ctctgttttt gaaagtaaaa aaattaaaga
     4861 gcacacaagt tcaaatttct taacccttac tcctggaatt cgtccttttg gagaaacaag
     4921 tgatgatcaa aaacgtgttg ctaatcttgc aatggctaga gaaaatttga gtgattatat
     4981 cgttgtggga aggcctatat ataaaaatga aaatcctagg gctgtatgtg aaaaaatttt
     5041 aaacaaaata cacagaaaaa atataagcga aaacgatata gagcaaaatt atgaagtaat
     5101 tcagcaaaaa gaatgggata tgtgtaatca ctttgaagaa tggattaaaa ctcagcctga
     5161 taaagaacat gctttaaaag aattttatgc taagtgtggg ataaaatatt gaattatcaa
     5221 caattagaat gcgattactt taatctttac aatcagtttc ttagcgtgga ttttcaaatt
     5281 tcattatttg aaaaagatca taaaggttta attaaagatt ttatattttt ttattatcaa
     5341 attttaaaac aaaaagactt gagctacttg cttgaggtaa gaaataaaat ttccctgaaa
     5401 gtttataatt atatgcaaga gcactccact tctccaaaag atttaagtct tatttgtcta
     5461 agagaaaata aacatattga attttttcaa atattttaca aggctctcgc ttattttgta
     5521 gcctttagaa aaaaacttga tggagaacaa aaaattaaaa atttgatttc aaatatcaat
     5581 gactgttttg gctatcattt cttgaattct gactttaaca atcttcaaaa ttttcaaaaa
     5641 agcgatttgt tcaccttacc tgaaaaacat cttaaatatt ttcacttcgc catgattcat
     5701 ctttgtttca tggttttaaa tcctttaaat tttaaagact ctaatcggca tcttgataaa
     5761 gcgattaatt atcttgtcga tggaactttt gaaatttatg agctcatctt taaagaatat
     5821 tttttattgt tttcaaaaga taaagagctc aaggatgaac ttagaaaatt aaaaaaatta
     5881 gaatttaaaa ttctaatgca agaaacttca aaaattaaac tacttaatca ctataaagaa
     5941 ttttgcgaag aaatattcta caatatagaa cttgaaaaaa tcacacaaaa ttaatcctgt
     6001 attaacattg ttatagttta ataataaaaa tttttaacaa ggaaaaatta tgattataac
     6061 tcctgagaat ttatataaaa aaagaagaga ttttttaaaa cttggagcgg gtgctttaat
     6121 aagttcaagc gtgcttgctt ctaaactatc tgctttaaat ttcacaagcg atactaatcc
     6181 aaacaaactt gaaatcagcg atgaagaact ggctacaaat tatgtcaatt tttatgaatt
     6241 ttcaacagat aaaagaaagg ctgtatcatt ggcacaaaat ttcaatactc aaaattggaa
     6301 aatcgatatc agtggagaaa tagaaaaacc tttaacttta agcatggaag atattttaaa
     6361 atttccacta gaagaaagaa tttatcgttt tcgctgtgtt gaaacttggt ctatggtggt
     6421 accttgggta ggctttgaat tgcgtcgttt gattgaaatg gcaaaaccta caagcgaggc
     6481 aaaatttgtt aaattcacca ctcttttaga taagagtcaa tttcccgatc aagacgcttt
     6541 atttccaact atagactatc cttatgtaga aggacttcgc atggatgaag ctatgcatcc
     6601 tcttaccttg cttgcagtag gaatgtataa aaaagcctta aagcctcaaa atggtgctcc
     6661 aatacgcctt gttgttcctt ggaaatatgg ctttaaaagt attaaatcta tagttaaaat
     6721 agaatttacc aaagaacagc ctaaatccac ttgggaaagt tacgctccaa gtgaatatgg
     6781 tttttatgcc aatgtcaatc ctaatgtttc tcatcctaga tggtctcaag ctaacgaaag
     6841 ggctttagga gacttctttg ccaagcctac tttaatgttt aatggttatg aaaaagaagt
     6901 ggcaagttta tataaaaaca tggacttgaa agtgaatttt taatgcagac aaaatacttt
     6961 aaatttcttg cttattttag ctttatcata agtttaatct atggctttta tcatatcata
     7021 aaagcctttg attttataaa agaagcctat atttacactg gaatatttgc tttaatcttt
     7081 ttaaatttaa gtcttttatt ttctttactt aaatttaaaa aaacaaaaaa ttatcctaaa
     7141 attttaggta tttttgcagc tttttgggcg attttgcact ttttaaatta ttttattttt
     7201 gatagaaatg ctcaaatttt aaggcttttt gatgatattt cacatcgttt attagaagca
     7261 agtggattta tcgcattctt aatcatattt ttaatgcttt taagttcttt taaaatcttt
     7321 aaaaaactta gtaaaatcag aaaactagga tatttatgct tagttttagc aagttatcat
     7381 tattttttaa ccccaaaaat tcctatgttt tgggaatgga gtgctttaat tatagctttg
     7441 ttttatttta tagttcgcta tacaaaaaca ttaaaaaagt taaaatccaa caatcttact
     7501 tttatcaaaa cttgaattta attctttttg tatactttct ataaaatctt gcattttaaa
     7561 aaccccatct tgtgatacag ctactttcaa agctgtattc ttcaccacca ttaaaatttg
     7621 tgctccactt aattcataat ttgataaaat atttatatca aaatcttttt caaataatgc
     7681 ttttttaggt agaaattttt cccaaatttt aagcctatct ttaaaatcag gttttttaaa
     7741 ttctatctta taatcaaatc ttcttgaaaa tgcactatct aagctttcta aaaaatttgt
     7801 cgtagcgata atcacaccac taaaacgctc aatttgctct aagaatatat tttgcatttg
     7861 attatgcatt ttatcgctac cactatttcc atctacacgc gtacttaaaa actgatcagc
     7921 ttcattgaga agtaaaatag gactttgttt acaagtttgc acgatatttt tataagtatc
     7981 aaaaattttt cttacatttt gctcactctc tccaacccat ttgctcaaaa ttttagaaca
     8041 gtcaaaacta aggacagatt ttttcattga tttagccata gctaaagctg acatagtttt
     8101 tccagtacca gcaggaccat aaaaaataat tttagcttct atatttttat tactctttat
     8161 accccaagaa tgaagtcttt ctaggacttt tttatcttgt tgttttaaaa tattttctaa
     8221 aagctctttt gtattttcag gcataataat atcattgatg tcagtgcttg gttctataag
     8281 ctcgaaaata tcttgatctt ttaaaacact ttcaattttg atttttttac tttgttttgg
     8341 ttcaaaattt ataattcttt gtaaaatttc atcgataata aaaaaacttt tagaaatatc
     8401 tccaaaagca tttaaatatt catcatactc gattaagttt aaaagaggag cattttcttg
     8461 taataatttt ttatttttat gcctttctaa atcattttca ctgattaaag aaagtaaaga
     8521 attcatttct ctagaaatcg aactttcatt acttaaggcg tattcttctt ttaaaagtgc
     8581 tagaaaaata atttgttctt tatgttcaag attgtattct ttaaaaatat cagccaatac
     8641 attataaaat ttactttttt ttagtctttc tttgatatgt ttttcataaa gtttaatttg
     8701 attttttatt tcactattat aagcactttt ttgtataaaa cttaatcttt cgtataattg
     8761 aatacgcgca aattcatctt ttaaatattc taaataatct gcataagcct cttgtttctc
     8821 aaaatttaaa cgaggttttg cttctaaaaa ttctaaaaaa tattcactta gactaagctc
     8881 actttgcaat aaggcaagag ttaatgtttg agttttatta ttttctaaac ttttaaaaaa
     8941 actcgaattt tgatttacaa aacctctttc gataagtttt tttaaatcct ccaaagcatc
     9001 aagataaaga tacttatcat ttccaaaaat tgtcgataat aaagtaaagg cattgataga
     9061 agaaatagaa acgacataat ttctacaaag ttctctaaga atcaaagcct catttttagc
     9121 acacttaagc tctttataaa tttgagtatc ttctatattt ttcaaactta aaaaattttt
     9181 taatttttcc attatttttt aaattcctta agctcatctt cgttaaattc tacgcaaata
     9241 ttttcatcta aaaaatgacc ttcaaaaggt agataacaaa tttttagttt tccattatta
     9301 agcaaaaaat tattattaaa ttgtaaattt tgcagatctt caaaacactc atcacatgta
     9361 tttttaagct tctcatgtaa aagattttga aatttttgat tttcagtatt atacaaatca
     9421 tttagtttta caaatgcgtg agcattaata tcataaacaa aattatttaa ctctaaaata
     9481 gcacgactca taccatcttc ataaaaataa taccattctt caaaactaat ttttccatct
     9541 tgtaaaaaaa taggtttttg gtgaatttgt tcaaaactaa atacaccctt atgaacagga
     9601 tgaaattctt taaaatcatc attaaaacct ataaaatcaa gactacgctt tatacgaatg
     9661 ccatcttgcg tttcgacaag ttctaaagta gttgttccta aattttctcc ttgaaaattt
     9721 ttattatcat atgtaagcat tttagaagaa ttgattttat attttttaca ctcatcttgc
     9781 caaaaatcat ttatcttaac gagtggaatc tctaaatttc catttatatc atcaataatt
     9841 aaaaaactag aacttgtttg atttttatcc ctgtcaaaaa gtggagtcat aggcgcatta
     9901 tcataaacta tggcaaaaat ttctttatcc tgcaaatgat aaaaatacaa ttcaccttta
     9961 taaacttgcg ctaaagctag atttacaaag caaaatacca gtaaaaaaaa tttcaaactc
    10021 tatcctttaa ttttgaatat gcgttaagat aattttagta tgcgaaattt tatcaaaaaa
    10081 acttacttta ttatcacaaa cttgataaaa aatttcataa ttttttgctt ttaaattttg
    10141 ttcaaaacca caatcagttt tttctaaatt tttaccctgc cataaaggat ttgcctttaa
    10201 aatatcactt aaaatatcat cataatatac atttttaaaa aatttttgat taaacacttg
    10261 tttatcataa cacactgtat tgatgcaaat tttatctttg attttgagtt caaaaaaagc
    10321 ttgccctagt ttataaactt ctaaatttaa agcattattt tcttttttta aaaaagctgt
    10381 atcattgatt tttatcatag gggaagcaat caaaaccatc aagctttgac ttgaaaaatt
    10441 ttgatttttc acactacaag cacaaagaaa aaaaacaaaa catagagcta aacaatgttt
    10501 caaatttgac cttatttgag atttttaaaa ctgatattta actctaaatc aagctctttt
    10561 acaagcttca tcacagcttg taaatcatcg atttgttttg ctgcaacacg aatttcttca
    10621 ccacgaatcg aagaattaac tttaagcttg ctatctttaa taactttatt gattttttta
    10681 gcattttcac tatcaatagc atcgtttgct ttcaaattta aacgaaacat tgctccactt
    10741 tcacgagaaa gctctttaat agcattagga ttaattcctc ttttgataag tttagaaatc
    10801 actatatctt ttaaaacatc aagttttcct tcactagaag aactgagttt aaaaatactc
    10861 tctttttcgc ttaaatcaat ctcacactta attcctttta agtcataacg actatcaagt
    10921 tcttttttag cttgttcaaa agcatttttt aactcttgtt tatctaaagc tgctgaaata
    10981 tcaaaactat gttcacttgc cattttctat ccattctttt aaattattat aaactatatc
    11041 cattaaagca tttaaagcct ccttgctcgc ccacgcaaca tgaggagtga taataagatt
    11101 ttctttattt ttaatgctta aaagtggatg atttttcatc ataggttcaa tttctaaaac
    11161 atcaagccct acacgaatat ttttttcatc tatgatttta gctaaatcat tttcattgac
    11221 aatcccacct cttcctacat taatcaaaat cgcattatct tttaaaagct ttaattcttc
    11281 aaaggcgagt aaatttttgg ttttttcatt taaaggtgcg tggatactta taatatcgca
    11341 agtttttaat aaatctttta attccaaatg tacaaaatct gcgtttttat tagctccact
    11401 cgtagaataa taataaattt cggctccaaa agcctttgaa atttttgcca cttctttacc
    11461 tatggttcct aaacctataa taccatgttt tttaccactt aaggtgttta aaattctact
    11521 ataatctgta aaaataggac tttcacacca tttaccctct ttgctccatt tgtcataata
    11581 aagcacttga tttaaaaaag caaacataaa tgcaaaagta tgttgcacca cactcatagt
    11641 agaataccca gcagcatttt ttacaataat acctttttct ttagcatact caatatcgat
    11701 attattaacc cctgtagcag tttccaaaat gagttttaaa tttttacaag catcaatcac
    11761 atctttatca attacaacct tgtttgtcat ggcgacatta gcatctttta aacgctctat
    11821 ggtttgctct ttatttgttg tggtataaat ttgcaaagaa ccaaattttt caaaaacact
    11881 taaatcataa tcccctaaag ttgccgcatc taaacaaaca attttcattt ctaatccttt
    11941 ataatatgtc ctacaaattt agaataatta tcaagcacaa gtcctccttt tctaaatcct
    12001 aagccacacc cttcataagc aaagaaaaca cctgcttgat agtattcgtt ttcacatgaa
    12061 ttaaactcta catattcttg ataaatagcc ttattattcc cataaggacc tacattctca
    12121 tgcaaagttt ttccatcttt aattatactg atatttgcgc cttctctacc aaaaacaggt
    12181 tttttaacat agtttttacc ctctaaagga gtatcttttg tttctaaaag taatggatga
    12241 tttggataaa gttcccatag aatttttaaa attcccttag attgaaataa aagcgtataa
    12301 gcaggattta aaataattgc tctttgatta cgcatgattt gagttaaaag catggcaagt
    12361 tcaccctctt ctatagctat atcttcccaa ggaataagct taaaccaata ctcataattt
    12421 tcgccctctt taaaaatacc ctcttcgcta aattccacct catccacaaa ggaaaaatta
    12481 gtttgaaaac ctgcttcatt ggctatatga gaaagtaatt ttgtagtgat ttcttcttct
    12541 ttacttcctg caacacttga aaaaagaatt ttccatcctt gataatgctc ttcaaaccct
    12601 tcaacacttt catcaagagt aataagtctt ttaaaattat ccatcaaact ttcataaatg
    12661 ctgttaaatt gtgcgctttc atccattcca ttttgtttta aaagtgccca ttgtaaaatc
    12721 gcactttcaa aaagagcagt aggggtatca gcattaaatt ctataagttt tataggcttg
    12781 ccatcaagtc cacccgctaa atcaaaacgc ccatataaat gccaatgaac ctcattttcc
    12841 caactcatct taatcgcatc aataagatta aaaggaattc caagctcatc aaaacgatca
    12901 ttattaatca cttcttgcgc tgcagcaata aacatatcat aaagctcatt taccgcttca
    12961 taataagcat tagcttcact ttccttaaca caaactaact tattgctaat ataatcactt
    13021 ccatcttcat ctgtatgcca agaaaaacct atattttcta aataatcttt ttgaagtttg
    13081 tctacttgta ataattgcat tatttatcct taagagccaa aagaagaact agaacttgtg
    13141 gctttagagc ctccaccaaa aaaacctgat tttttagcac ttgaagcaga gcttgttgtg
    13201 cctgctttat taaaactatt aacactcctt tgataagcac tttgatttga aaaagcaccg
    13261 cgttgttggt tggcaaaatt ttgattattg aaaagttttg aacctatcca acttcctaaa
    13321 atagcacctg cagcacttgc gagtaaagtt tcccctaaac tcaatccccc actactgatt
    13381 tgtccattgt ctttagttaa atttgaagtt ccattatcaa ttttagccgc ttcttcttta
    13441 atcaaagcat ccatttcttc tttggataaa attctttctg taccattaag atcttttaaa
    13501 actacccttg tttcatcact tggatattga tctttgattt tatactgccc tggagctgtt
    13561 tcttcgataa ttacaaaagc tccttgagca ttagccgctt gatttaaagt atctgcattg
    13621 tcattattac ttccacaacc tgctaaagca cctccagcaa cagctgctaa accacctatc
    13681 ataccaattt gaatgatttt tttgattttt ttcataagtt tatcctaaaa acagaaaatt
    13741 taaattagaa attttaacaa aaaataataa atacttttta atttaatacc aaatgaagtt
    13801 tgtagatata aaaaagccct ttcgggcttt tgggttagag tcttgactcg tagcgtctaa
    13861 gcatataaag tcttttaagc atttttttgc gtgctgaaat tttttgtttt ttgcgaattt
    13921 cagtcatagg ctcaaaaaat cttcttgctc ttacttcagt cacaactaga tttctatcta
    13981 cttgtttttt gaatttacga tacgcttcat caaaagactc gttaggatgc accttgattc
    14041 ctggcacagt cctcaccacc tttctgtgta aatttttgtt gtgaaatata attataaaac
    14101 acttcttatt aattctaact tagaaagcat ttaaaaattg ttttagtttt tatcggttat
    14161 aatccttaat tacaaagtgc taaaaaatta taattaaggt ctaaaaatgc aaggacacat
    14221 tacaaactat acaaaaaaac gatattttgt atatttaatt gcaagtatta tcatattttc
    14281 cctacctttc ataagaatta atgagaatca tttttttctt ttaagttttg atcattctaa
    14341 attaaaccta ttttttattt ctttttcaac acaagaattt tatctcatgc cttttgttct
    14401 tatatttctt tttttattta ttttttttat tacaacttta ggtggaagaa tttggtgtgc
    14461 ttggagttgt ccacaaacga tttttagagt tatatataga gatatcatac aaactaaatt
    14521 tcttaaaatt cgcaaaaata tcaataacaa acaaaaagaa tatgagaggc aatattttaa
    14581 aaaatttctt ggagtgataa ttttttattt tatatcttta gttgctgtta gtaatttact
    14641 ttggtacttt attcctcctg aagatttttt caattatatt caaaatcctg gcgagcatct
    14701 acttttactt ggaattttat tttgtgctag cttacttttt actttggata ttacctattt
    14761 acaagaaaaa ttttgtgttt atgtctgtcc ttatgcaaga atacaatctg taatgttcga
    14821 tcatgataca atgcaagtga tctacgatga aaaacgcggg ggcttgatct atgatggaca
    14881 caccaaactt cataaaaaac cgcctgaggg agaatgcata ggttgcgaag cctgtgttag
    14941 tatctgtcca actcatattg acatacgcaa aggaatgcaa cttgaatgta ttaattgtct
    15001 tgaatgtgcc gatgcttgct ctaaggttca aagcaaattt aatcgtccaa gtttgatcaa
    15061 ttggacaagt gcaaaagcta ttgaaacgcg ttctaaggtt cattatttaa gatttagaac
    15121 gatagcatat tttatagttc ttttaattgc tttactggct ttaatcatca tgggaagcaa
    15181 aaaagaaagc atgcttttaa atatcaatcg tagtagtgaa ttatataata tttcaaatgt
    15241 taaaggtgaa ttagtcattt caaatgctta tacctttttg tttcaaaata cagattctaa
    15301 acctcatgaa tattatttta cagcaaattt agaaggaata aatgatggaa ttgaaatcat
    15361 aagaccaaac aaacctttta aattaaaagc aggagaacaa gtcaaaaaaa tagttgttat
    15421 cagggctaca aaaaatttag caaataatga taaaaaagac gtaatctttc ctttacatat
    15481 aaaagcttac gcaaaggata atgaaaaaat ttcggttttt agaaaaagta tatttgtata
    15541 ccctaaaagc actcttataa aggataaaaa tgaactcaaa tagaacacca tcacaaaaag
    15601 ttttagccag acaagaaaaa atcaaagcag tggccttaga gcttttttta acaaaaggat
    15661 accaagaaac aagtttgagt gatattatta aattatctgg aggatcttat tctaatattt
    15721 atgatggttt taaaagtaaa gaagggctat tctttgaaat tttagatgac atatgtaaaa
    15781 aacactttca tcttatttat tccaaaacac aagaaattga aaatggcact ttaaaagaaa
    15841 ttttaacttc ttttggttta gcttttatag aaattttcaa tcaaccagaa gctgtagctt
    15901 ttggtaaaat tatctattct caagtttata acaaagatag acatcttgcc aattggatag
    15961 aaaataatca acaaaatttt tcctataaca tacttatggg ttttttcaag caacaaaata
    16021 attcttatat gaaaaaaaat gcaaaaaaac ttgctgttct tttttgcact atgttaaaag
    16081 aaccttatca tcatcttaat gttttaatta acgctccttt gaaaaataaa aaagaacaaa
    16141 aagaacatgt tgaatttgtt gtaaatgttt ttctaaatgg aatcaatagc tccaaagctt
    16201 aaaaaataat tttattaacc aaaattaaga tataattagc caaaaatttt tgtaataaaa
    16261 attacaattt ttaatttaat ttttcaaggc aaaaccatga aattatttca aaaaaatact
    16321 attttagctt taggtgttgt gcttttactc actgcttgca gcaaagaaga agcaccaaaa
    16381 atacaaatgc cgcctcaacc tgtaacaacc atgagtgcta aatctgaaga tttaccactt
    16441 agttttactt accctgctaa acttgtcagt gattatgatg tcattataaa gcctcaagtt
    16501 agtggcgtaa tagaaaataa actttttaaa gctggagata aagtaaaaaa aggacaaaca
    16561 ttatttatta tagaacaaga caaatttaaa gctagtgttg attcggctta cggacaagct
    16621 ttgatggcta aggcaacttt cgaaaatgca agcaaggatt ttaatcgttc taaagctctt
    16681 tttagtaaaa gtgcaatctc tcaaaaggaa tacgactctt ctcttgctac atttaacaat
    16741 tcaaaagcta gtctagcaag tgctagagca cagcttgcaa atgcaagaat tgatctagat
    16801 cataccgaaa taaaagctcc ttttgatggt actataggag atgctttagt taatatagga
    16861 gattatgtaa gtgcttcaac aactgaacta gttagagtta caaatttaaa tcctatttac
    16921 gcagatttct ttatttcaga tacagataaa ctaaatttag tccgcaatac tcaaaatgga
    16981 aaatgggatt tagacagcat tcatgcaaat ttaaatctta atggagaaac cgttcaaggc
    17041 aaactttatt ttattgattc tgttatagat gctaatagtg gaacagtaaa agccaaagct
    17101 atatttgaca acaacaactc aacactttta ccaggtgctt ttgcaacaat tacttcagaa
    17161 ggttttatac aaaaaaatgg ctttaaagtg cctcaaatag ctgttaaaca aaatcaaaat
    17221 gatgtttatg ttcttcttgt taaaaatgga aaagtagaaa aatcttctgt acatataagc
    17281 taccaaaaca atgaatatgc cattattgac aaaggattac aaaatggcga taaaatcatt
    17341 ttagataact ttaaaaaaat tcaagttggt agcgaagtta aagaaattgg agcacaataa
    17401 tgttttctaa attttttatc gaaagacctg tttttgcttc agttgttgca attatcattt
    17461 ctttagctgg agctataggt cttacaaatt tacctataga acaatatcct tctttaaccc
    17521 ctcctacagt taaagtaagt gcaacttaca caggagctga tgcacaaacc attgcttcaa
    17581 cagttgcaag tcctatcgaa gatgcaatca atggcgcaga taatatgatt tacatggatt
    17641 caacttcaag ttcttcagga actatgagtt tgactgttta ttttgatatc ggtacagatc
    17701 ctgatcaagc caccatagat gttaataata gaatttcagc cgcaactgca aaaatgccag
    17761 atgcagttaa aaaacttgga gtaacagtta gaaaaacttc ctcaacaaca cttgctgcaa
    17821 tttctatgta ttcaagtgat ggctcaatga gtgcagtaga tgtatataac tatatcactt
    17881 taaatgtttt agatgagtta aaaagggttc caggagttgg agatgcaaac gctataggaa
    17941 atcgtaatta ttctttaaga atttggctca agcctgattt attaaataaa tttggaatca
    18001 cagctactga tgtaatttct gcggttaatg accaaaatgc ccaatacgca actggtaaaa
    18061 ttggcgaaga acctgtaacc caaaaatccc cttatgttta ttcaatcact atgcaaggaa
    18121 gactacaaaa tcctagtgaa tttgaaaaca ttattttaag aacaaataat gatggatcat
    18181 ttttaagact taaagatgta gctgatgtgg aaataggatc acaacaatac agctcacaag
    18241 gacgattaaa tggcaatgat gcagttccaa ttatgatcaa tcttcaatca ggggcaaacg
    18301 cattgcatac agcagaactt gttcaagcta aaatgcaaga actttcaaaa aattttccaa
    18361 aaggtttaac atataaaatt ccttacgata caacaaaatt tgtaatagaa tcaatcaaag
    18421 aagttgttaa aacttttgtt gaagctctaa ttttagttat cattgttatg tatatgttct
    18481 taaagaattt ccgtgcaaca cttattccta tgatagctgt acctgtttca ttgttaggaa
    18541 cttttgctgg actttatgtt ttaggtttta gtattaactt gcttacgctt tttgctttaa
    18601 ttttagccat agggatcgtt gtagatgatg cgattatagt tgtagaaaat attgatagga
    18661 ttttacatga aaatgagcaa ataagcgtaa aagatgctgc tatccaagcg atgcaagaag
    18721 ttagctctcc ggttatttca attgttcttg tgctttgtgc tgtttttgta ccagtttctt
    18781 ttatatcagg ttttgttgga gaaattcaaa gacaatttgc tcttacctta gctatatctg
    18841 taaccatatc aggttttgtt gctcttacct taacaccttc tttatgtgca ctctttttgc
    18901 gacgtaatga aggagagcca tttaaatttg taaagaaatt taatgatttt tttgattgga
    18961 gtacctctgt atttagcgca ggagtagcat atattctaaa aagaaccatt cgttttgttt
    19021 taattttttg tattatgctt ggggcaattt tttatctcta taaagctgta ccaagctctt
    19081 tagttcctga agaagatcaa ggtttgatga ttggcattat caaccttcct tcggcttcag
    19141 cactccatag aacaatctca gaagttgatc acataagcca agaagtttta aaaactaatg
    19201 gagttaaaga tgcaatggct atgataggat ttgatctttt tacaagttca ctcaaagaaa
    19261 atgccgctgc aatgtttata ggcttgaaag attggaaaga tagaaatgtg agtgctgatg
    19321 aaatcgccat ggagcttaat aaaaaatttg cttttgatcg caatgcttca agtatattta
    19381 taggcctacc tcctatacct ggattaagta tcacaggcgg ttttgaaatg tatgttcaaa
    19441 acaaaagcgg aaaaagctat gatgaaatac aaaaagatgt aaataaactt gttgctgtgg
    19501 ccaaccaaag aaaagagcta tcaagagtaa gaacaaccct tgatacaact ttccctcaat
    19561 acaagcttat aattgataga gataaattaa aacactacaa tcttaacatg caagatgttt
    19621 ttaacacgat gaatgcaact ataggcactt attatgttaa tgatttttct atgctaggta
    19681 aaaacttcca agtaaatatc cgcgcaaaag gtgattttag aaatacacaa gatgcattaa
    19741 aaaatatttt tgtaagatca aatgatggaa aaatgatacc acttgattct ttcttaactt
    19801 tacaaagaag ttcagggcct gatgatgtaa aacgattcaa ccttttccca gcggcacaag
    19861 ttcaaggtca acccgcacca ggttatactt caggtcaagc tatagaagcg attgctcaag
    19921 tagcaaaaga aactttaggg gatgattatt ccatagcttg gagtggatca gcttatcaag
    19981 aagtttctag taaaggaaca gcaagttatg cttttgcttt aggtatgata tttgtctttt
    20041 taattctagc tgcccaatat gaaagatggc ttataccttt agcagttgta acagctgtac
    20101 cttttgcggt atttggatca tttttattgg tatatttaag gggatttagc aatgacatat
    20161 attttcaaac aggacttttg ctcttgattg gactttcagc taaaaatgct atcttaatcg
    20221 tagaatttgc aatggaagag cgctttaaaa aaggcaaagg agtttttgaa gcagctgttg
    20281 cagcagcaaa acttcgtttt cgtcctatca taatgacttc tttggcattt acttttgggg
    20341 tcttgccaat gattttcgca acaggagcag gaagtgcttc aagacactct ttaggaacag
    20401 ggcttattgg tggaatgatc gcagcatcaa ctttagcgat attctttgtg cctttatttt
    20461 tctatctttt agaaaatttt aatgaatggc tagataaaaa aaagaggtaa ggttcatgaa
    20521 taaaataatt tcaattagtg ctatagcaag ttttactctt ttgatttcag cttgctcttt
    20581 aagtccaaat ttaaatattc ccgaagcaaa ctatagcatt gataataagc ttggagcctt
    20641 atcttgggaa aaagaaaaca atagctctat cacaaaaaat tggtggaaag actttgatga
    20701 tgaaaattta aataaagtgg ttgatttagc acttaaaaat aataatgatt taaaacttgc
    20761 tttcatacac atggaacaag ctgctgctca attaggtata gattttagca gtttgttgcc
    20821 aaaatttgat ggtagcgcaa gcggaagtcg tgcaaaaaca gctataaatg ctccaagcaa
    20881 tcgaactggg gaagtaagtt acggtaatga ttttaaaatg ggacttaatt taagctatga
    20941 aatcgatctt tggggaaaat atcgcgatac atatcgcgcc tcaaaatcag gctttaaagc
    21001 aagtgagtat gattatgaag ctgcaagact ttctgttatt tcaaatacag ttcaaactta
    21061 ttttaatctt gtaaatgctt atgaaaatga aaatgctctt aaagaagcct ataaatctgc
    21121 aaaagaaatt tataggatta atgatgaaaa atttcaagtt ggtgctgtag gtgaatatga
    21181 acttgctcaa gcaagagcca acttagaaag tatggctttg caatataatg aagcaaagtt
    21241 aaataaagaa aattacctta aagctttaaa aattttaact tcaaatgatt taaatgacat
    21301 actttacaaa aatcaaagct atcaagtttt taatcttaaa gaatttgaca ttccaactgg
    21361 aatttcaagt accatcttgc ttcaacgtcc agatattggc tcttctttag aaaaattaac
    21421 tcagcaaaat tatcttgttg gagtagctcg cacggctttc ttacctagcc tttctttaac
    21481 aggattattg ggatttgaaa gcggggattt agataccttg gttaaaggag gttctaagac
    21541 ttggaatata ggtggaaact ttactctgcc tatttttcat tggggtgaaa tttaccaaaa
    21601 tgtaaattta gccaagctta ataaagatga agcttttgta aattatcaaa atactttgat
    21661 tactgctttt ggagaaattc gctatgcttt agtagctaga aaaactatac gcttacaata
    21721 cgataatgca caagcaagcg aacaatctta caaaagaatc tatgaaattg ctaaagaacg
    21781 ctatgatata ggagaaatgt ctttgcaaga ttatttagag gcacgtcaaa attggcttaa
    21841 tgctgcggtt gcttttaata atattaaata ttcttatgcc aattccatag tagatgtaat
    21901 caaagcattt ggtggaggat ttgagcaaag tgaagatacg agtaaaaata taaaagaaga
    21961 atcaaaaaat ttagatatgt cttttagaga atagtttgtt ctattctcta aataaattaa
    22021 aaatctttgt ctaaatctgc atctgtaatt tcataagcct tgtaaatagc aggcaataat
    22081 tttcttatag cataatcaaa atgataaaat tgcttatata cctcttctgg atttaaattt
    22141 ttagcattct taaaatcaaa tacttcagta ttattgattt tggcaatatt ttcatcaaaa
    22201 taagagtaaa actctgctct ttgtttaaac aaagcattta aattttgaac aattttggct
    22261 ttatccattt ttatatcctt tttaaataat ttaaaaactt aatcccattt tttatttaag
    22321 aaataaaaaa tttactccta ttttagctaa aaattgataa agttatgtct taaatatttt
    22381 aatatatagg ccacttatga atttatttca aaatttagct ttaaaatact ctcatactat
    22441 gatggaaaaa tccctccaaa aaggtttcaa tgtcgaactt ttaaaacaac ccgaagaaaa
    22501 aattccaaaa caagacaaaa gctatatgct ttatgcccat gtaccttttt gccatacttt
    22561 ttgtccttat tgtagctttc ataaatatta ttatgatgaa aatttagcca aagtatattt
    22621 tcaaaatctt agagaagaaa ttaaaatcat gaaaaataaa ggttttgatt ttacctccat
    22681 gtatgtgggt ggtggtacaa cactgattga tgaagaggaa ttattaaaaa ccttagaact
    22741 ttgtaaaaag ttatttaata taaaagaaat ttcatgcgaa agcgatccaa atcatattga
    22801 tccaaataag ctttctatgt ttaaaggtat aattgatcgt ttaagttgcg ggattcaaag
    22861 ttttgatgat gaaactttga aaaaagtggc aagatataat aaatttggtt catctaaaga
    22921 acttcaagaa aaaatttcaa aagctttagg aattttacct atttttagta tagatcttat
    22981 tttcaatctt ccaggacaaa acgaaaaaca acttttaaat gacttagaaa ttgctaaaaa
    23041 tttagccccg caacaaatca caacctatcc tttaatgaaa tcaaatctta ccaaagataa
    23101 tatcgctaaa agtctaggag tgagcattaa agataatgaa tttacttatt atcaaatcat
    23161 acgagaattt tttaaagact atacccaaaa caatggttgg agtttttctt tagaaaaaaa
    23221 caagcttaat gacgaatatg tcagttctca tcatgaatac ctaggagtag gcagcggggc
    23281 ttttagcttt ttagatgggg agcttttaat caatgcattt aatctaaatg attatgctaa
    23341 atttatacaa gaaaaacaaa atgctaatat agccaaagct tgttttgata aaaaagaaat
    23401 tatcaaatat gtctttttaa ctgaaatttt ttcagggaaa atagaaattg ataaatttaa
    23461 taaaactcta aattgcaatc tcgaaaaaga acttttcata gaacttttag gacttaaaac
    23521 aagtggtgcc atcataaaag atcaaaatgc tttaatcgca actgaatttg gtcaatatct
    23581 ttttgtggtt ttaatgaaag atttttacac aggaatggat cttgtgcgcg cagtatttag
    23641 agatgataag cgtcttaaaa ataaagatta tatcgatatc atgaaagaaa atattgatcc
    23701 gcttaactcc gctagtatgg aatttaaagc ggagacaaac taaaagggac gaacaaccat
    23761 cattaaagcg atgataataa acattatagt tggaaattca ttataaattc taaaatattt
    23821 tccactttta gtagaagtat catttgctaa agcttttaaa caataataat tatgtatatg
    23881 aaaaataatc aaaagtgtaa cacaggtaag tttaacatgc ataaaacccg cacctaccat
    23941 taaaacttcc ttatgagcat gcaacattaa acttcctgtg attaaagtca caatcattgc
    24001 aggagtttgt atataataat aaagctttct ttcttgaatt tttacaacct cgacaaaacc
    24061 tttattgtct ttatgttcag catgatacac aaaaagacga ggtaaataaa aaagacccgc
    24121 catccaagaa acaaatgcca aataatgcac ccatttaatc caaaaataat aatcattaat
    24181 ccattctgtc atcttttttc ctttttttaa atatttcttg tattaaaatc aaagccacac
    24241 ttatatttat catgacatct gcaacattaa aaatagcaaa attaaaccat ttatgccaaa
    24301 aaaacatatc cactacacct ccatgtataa aacgatccaa taaatttgaa acgccggcac
    24361 caagcatcat tccaaaagct atgctatgag tttttaaaag tgttctttgc caaaaaagat
    24421 aaataaaaag cacgccaatt aaagcaagat gtaaatattt taaattatgt tctaaaaaac
    24481 tcaacattga aaaagctacg cctgtattta gagcataagt taaatctagg tattcactct
    24541 gccatctaaa tcctgctaaa gttaaggatt ttacccattg atcaagggca aaaaccaaaa
    24601 caaaggcacc ccaaaaataa aaaataaatt taaaagtttt agccatttaa agctttctta
    24661 aaaaactcca caacattttt catttctttt tctaagagct taatatctct ggcttctagt
    24721 aaaagtctta tcaaattttc tgttccagaa
//
LOCUS       DARBAR010000010        24480 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.010, whole genome shotgun sequence.
ACCESSION   DARBAR010000010 DARBAR010000000
VERSION     DARBAR010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24480
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.010"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..652
                     /locus_tag="SB815_000283"
     CDS             <1..652
                     /locus_tag="SB815_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="carbamoyl phosphate synthase small subunit"
                     /protein_id="HEG0906058.1"
                     /translation="KEVSTKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNI
                     LNELVEVGFEVEVYPYNVKADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLA
                     EAKIPMLGICLGHQLLSNAFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVP
                     EELAQVAHITHRNLFGDNVEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            649..1308
                     /locus_tag="SB815_000284"
     CDS             649..1308
                     /locus_tag="SB815_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG0906059.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGILVMMIFGISTLPAMLFFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIGFKAF
                     Q"
     gene            1305..2516
                     /locus_tag="SB815_000285"
     CDS             1305..2516
                     /locus_tag="SB815_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HEG0906060.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHDVSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITI
                     KDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACF
                     EIFLKLKERVE"
     gene            2519..3199
                     /locus_tag="SB815_000286"
     CDS             2519..3199
                     /locus_tag="SB815_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG0906061.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGGEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            3325..4791
                     /gene="ccoN"
                     /locus_tag="SB815_000287"
     CDS             3325..4791
                     /gene="ccoN"
                     /locus_tag="SB815_000287"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HEG0906062.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            4804..5469
                     /gene="ccoO"
                     /locus_tag="SB815_000288"
     CDS             4804..5469
                     /gene="ccoO"
                     /locus_tag="SB815_000288"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HEG0906063.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            5474..5737
                     /locus_tag="SB815_000289"
     CDS             5474..5737
                     /locus_tag="SB815_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HEG0906064.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYWYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            5737..6600
                     /locus_tag="SB815_000290"
     CDS             5737..6600
                     /locus_tag="SB815_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG0906065.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            6597..6818
                     /locus_tag="SB815_000291"
     CDS             6597..6818
                     /locus_tag="SB815_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HEG0906066.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLVILAVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            6815..6916
                     /locus_tag="SB815_000292"
     CDS             6815..6916
                     /locus_tag="SB815_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906067.1"
                     /translation="MSKALEYLIVIGLVAAAAITAWSVLTVNHLHIG"
     gene            6913..7515
                     /locus_tag="SB815_000293"
     CDS             6913..7515
                     /locus_tag="SB815_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906068.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            7502..8023
                     /locus_tag="SB815_000294"
     CDS             7502..8023
                     /locus_tag="SB815_000294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0906069.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            8020..10386
                     /locus_tag="SB815_000295"
     CDS             8020..10386
                     /locus_tag="SB815_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEG0906070.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSKFEENLLSEISQIKEVVLSFKTSKFNLEYLLKLDFLKIFDLKINTHYEINL
                     SKQEILKEEIFKTKNSKMKLKSFELRALQCAFVMDEISHFVRKGLKPENIAVITPDES
                     FCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFVYKNQEDYFEDTQMI
                     FDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEKLLALFLENEKQELMYLIRKELYFIK
                     DLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEE
                     FIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK
                     SRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSR
                     FNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYANNDFDIKV
                     FANLLDKEYQKYNISELDLEVFKLKFMQFAKNEKEHFSKGFYVVHTELELNNILKLGT
                     DSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENASVGFYDLNSMQ
                     ILHQKAKSLDELRERLKDLVLMSKEEIEFENEQDEYCPYKLIYKKELK"
     gene            10383..13148
                     /locus_tag="SB815_000296"
     CDS             10383..13148
                     /locus_tag="SB815_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HEG0906071.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMEFINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDNLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEAFIIDYKTGLAMQDKHKEQVGTYKIAISEILQKDKVRAFIVYCLEN
                     EIQILEI"
     gene            13232..13657
                     /gene="rplM"
                     /locus_tag="SB815_000297"
     CDS             13232..13657
                     /gene="rplM"
                     /locus_tag="SB815_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEG0906072.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            13660..14049
                     /gene="rpsI"
                     /locus_tag="SB815_000298"
     CDS             13660..14049
                     /gene="rpsI"
                     /locus_tag="SB815_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEG0906073.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            14174..15133
                     /gene="cadF"
                     /locus_tag="SB815_000299"
     CDS             14174..15133
                     /gene="cadF"
                     /locus_tag="SB815_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HEG0906074.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRATPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            15133..15774
                     /locus_tag="SB815_000300"
     CDS             15133..15774
                     /locus_tag="SB815_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG0906075.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKGLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKAHSMVFLNAYEAVNYIARLN"
     gene            15867..19427
                     /gene="nifJ"
                     /locus_tag="SB815_000301"
     CDS             15867..19427
                     /gene="nifJ"
                     /locus_tag="SB815_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEG0906076.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            19451..19768
                     /locus_tag="SB815_000302"
     CDS             19451..19768
                     /locus_tag="SB815_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG0906077.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKEIKFQYDNLEIAIQINKNDKINI
                     NIN"
     gene            19740..21158
                     /gene="mshL"
                     /locus_tag="SB815_000303"
     CDS             19740..21158
                     /gene="mshL"
                     /locus_tag="SB815_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HEG0906078.1"
                     /translation="MIRLILILINILFCHYLYALDCQKRLFDISINEKLSIQESLDEL
                     AKYCSFSIIVKDKIAKEKLETLQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRIS
                     GINTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQN
                     IEKEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVI
                     IDVSILAVSLNESHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNF
                     DSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESY
                     NNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKL
                     SSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFII
                     TPSIVDSVNAPSLKDLGFKHYE"
     gene            21151..21759
                     /locus_tag="SB815_000304"
     CDS             21151..21759
                     /locus_tag="SB815_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0906079.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
                     QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR"
     gene            21763..22350
                     /locus_tag="SB815_000305"
     CDS             21763..22350
                     /locus_tag="SB815_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG0906080.1"
                     /translation="MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKY
                     NKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKELEEVKAVQENTHISKIE
                     IDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
                     LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
     gene            22340..23899
                     /locus_tag="SB815_000306"
     CDS             22340..23899
                     /locus_tag="SB815_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HEG0906081.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFNKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNNDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLACAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            23896..>24480
                     /locus_tag="SB815_000307"
     CDS             23896..>24480
                     /locus_tag="SB815_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEG0906082.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYFMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFI"
BASE COUNT         8841 a         2842 c         4420 g         8377 t
ORIGIN      
        1 aaaagaagtt agcactaaga aaaattattc tcataaacaa ggcgtttgga acgctagttt
       61 tcaaaaattt aatgatgcta aaagaagtga gaaaaaagtt gctgttatag attatggtgt
      121 taaaacaaat atcttaaatg aacttgtaga agtaggtttt gaagtagaag tttatccata
      181 taatgttaaa gcagatgagt tgattactct gtataaaaaa ggtgaaattc aaggcgtgtt
      241 tctttctaat ggtccaggtg agccaaggat tttaaaacaa gagattgcag agattaaaaa
      301 acttgcagaa gctaaaattc ctatgcttgg aatttgctta ggtcaccagc ttttaagtaa
      361 tgcttttgga tatgaaactt ataaaatgaa atttggacaa catggagcaa atcatcctgt
      421 gatcaatctt gatacaaaaa cggtagaaat taccgcacaa aatcataatt ataatgttcc
      481 agaagaatta gctcaagtgg ctcatatcac tcatagaaat ttatttggcg ataatgttga
      541 aggagtaaga tataaagact atcctattat ttcagtgcaa catcatccag aaagttcttc
      601 aggtcctcat gaaagtaagt atatttttaa agaatttatg aatttgatgt gagtatagat
      661 tttttagcta ttatcagcgt tgctttttta tctagttttg gacactgcta ttctatgtgt
      721 ggtggtttta atttactttt tataaatttg aattcaaaaa gcaataattt atttttatta
      781 acttttattt ataatttgtt tagaattttt gcttatattg ttttagggat aatttttggg
      841 acttttggga atatcttggc aatcaatgcc aaggttcaaa gtttgtcatt ttttattctt
      901 ggtatattta tgatgatttt gggttttgct cttattttta gaggtaatat gttatctttt
      961 attgaaaata atgttttttt tgatagtttt gtaaagaaaa ttattaaaaa atctaaaaat
     1021 tttaaaggat taaaatcagc catattttta ggattttcaa atggttttgt tccttgtgga
     1081 ttggtgtatt tttttatagc caatgcaatg agtaagcaaa atatttttga aggtattttg
     1141 gtaatgatga tttttggaat atcaacttta cctgcgatgt tatttttttc taaaatttca
     1201 cagtttttta gtgatttttt gaaaaattta tttaattatt tatcgtatgg cgttattgtt
     1261 tgttacggta taaatcttgc ctatataggt tttaaggctt ttcaatgaaa gattttttta
     1321 aagatcagtt ttttaaagct cttgaaaaaa atacaatttt ttcaagagct gatgttcaag
     1381 gaaatttaat ttttgtcagt gataagcttt gtcaaataag tggatatagt aaaaaagagc
     1441 ttataggaaa aaaacattca atatttaaac atccagatgt tgaggaatgt tatattgaag
     1501 aacttttaaa aaaactttca tataaaaaac cttatcaagt tatttttaaa aatattgata
     1561 aattaggcaa aactttctat cttgaaactt tattaatccc catattggat aaaaataatg
     1621 aattaataga aatagtagca ttctctcatg atgttagtaa ttcttttaag cttaatgaag
     1681 agcttgctct aaatcacgct aaattaagag aattaagtat taatcttgaa aatacagtta
     1741 aaaatcacca acaagaattt atacagttag gtaaaaaatt tgagaaaaaa atgcaaattg
     1801 ccttggaaaa aaatgaaaaa gatattaaaa tagcatatga agagattttg aaatcttcat
     1861 tagaacaaat gattagcgat atagcacatc aatggagaca accgttaaat gagctcggta
     1921 ttgccatgtt tcaaatgaag caaaatctta aagatgaaaa aggatttgct gaaatttact
     1981 cacaatcaaa agatatgatt aaaaatatgt cagaaacaat tgatgtgttt agaactttgt
     2041 ttaacaaagg agtagagcag tgtgtattta taaaagagac tttaaataaa gccttggaaa
     2101 ttgcttttga aactatagaa aaaaatcatg taaatattaa tattgtttcg aaaagtgatt
     2161 atgaagtttt ggcatatgag aatggtttaa taagagtttt tcttaatttg attttaaatt
     2221 caatagaagc atttaaaaac aaaaaaagga aaatcataac aataaatttt tcaaaatttg
     2281 gaaaaaatta tctgaaaatt acaataaaag ataatgctgg tgggattgat aaagaaaatt
     2341 tagataaaat ttttcaacct tattttacaa caaaacatcc tagtcaaggt ataggagtag
     2401 gactttatat aagtagacaa attatcgaaa gtttccaagg aaaaataaaa gttaaaaatg
     2461 gaaaagacgg ggcttgtttt gagatatttt taaaactaaa agagagggta gagtagaaat
     2521 gtcacaagaa tgtaaagaat tgataatatt agtagttgaa gatgaggtta aggctagaga
     2581 atcaatgatt aatatattaa gcgaacgctt tagtaaagta atcggagctc aaaatggaga
     2641 tgaggggctt aaaaaattta aaaaatttaa gccagattta gttatcacag atattgctat
     2701 gcctattatg gatggactgg atatggcaag agagattaaa gaaatttcag atgatgtccc
     2761 aattgttgtt cttagtgcgt attcagagaa agagagactt ttgcgttcta ttgatattgg
     2821 tatagataaa tatttgatta aacctgttga tatagaagag ttgtttaaag ttttagatta
     2881 tctgataggt gaaaaaattg aagcaaatat gcttgtaaaa atttctgaag aatatcaatt
     2941 taacaaaact aaacgaactt taatttacag tggtggagaa attgttttaa ctaaaaaaga
     3001 attggctttt atttctttgc ttttaaagca acctggagct ttggttttgc atgaagatat
     3061 taagaaaaat gtttggatag gtgaacatgt gagcgatact gctgttagaa cttttataaa
     3121 aagagtaaga gataaagtgg gtgaagattt tataaaaaat gtgccaagtt taggttataa
     3181 gataaatatc aataaataag actgatttag ccttaaaata taaaacataa caaatgatta
     3241 acaaaattat catttttaag aaaaaatgta taattaatat tctataatat tctcttgtta
     3301 tcaaaaattt taaggagaaa gtcgatgcat ccaggtaatg tattaaatta cgactatacg
     3361 gttgcaagat attttatgtt tgcgaccata ttgtttggca ttgttggtat ggctatagga
     3421 actcttatag cttttcaaat ggcatatcct aatttaaatt atttagcagg agaatatgcc
     3481 actttttcaa gacttagacc acttcatact tcaggtgtga tttttggttt tatgctttca
     3541 gggatttggg caacttggta ttatataggt cagcgtgttc ttaaagtgag tatggctgag
     3601 tcaagatttt taatggctgt tggtaagctt catttttggc tttatatgct tactatggtt
     3661 ttagctgtta tatctttgtt tatgggtgtg actacatcta aagaatatgc agagcttgag
     3721 tggcctttag atattcttgt tgttcttgtt tgggttttat ggggtgtaag tatttttgga
     3781 cttattggaa ttcgccgtga aaaaaccctt tatatttctc tatggtatta tatagctaca
     3841 tttttaggta tagctatgct ttatcttttt aacaacatgg aagtaccaac ttattttgtt
     3901 actggaatgg gtaaatggtg gcatagtgta tcaatgtatg caggaacaaa tgatgcttta
     3961 gtacaatggt ggtatggaca taatgctgtg gcatttgtat ttactgtggg tattattgct
     4021 caaatttatt acttcttgcc aaaagaaagt ggtcagccga ttttctctta taaactctct
     4081 ttatttgcat tttggggctt aatgtttgtt tatctttggg caggtggtca ccatttgatt
     4141 tattcaactg tacctgattg gatgcaaact atgggttcgg ttttctctgt agtattgatt
     4201 ttaccttctt ggggttcagc gattaatatc ttgcttacta tgaaaggtga gtggagtcag
     4261 cttcgcgaga gtccgttgat taaatttatg attttggcat caactttcta tatgttctca
     4321 acacttgaag ggccaattct ttcaattaaa tctgttaatg ctttagcaca ctttacagat
     4381 tggattccag gacatgttca tgatggaaca ttaggttggg taggatttat gactatggct
     4441 gcgctttatc atatgactcc tagagttttc aaaagagagc tttatagcaa atctttaatg
     4501 gaagctcaat tttggatcca aaccacaggt atagttcttt attttgcttc aatgtggatt
     4561 gcgggtatta ctcaaggtat gatgtggaga gcgacagatg agtatggtaa cttgctttat
     4621 agctttattg atactgttgt ggctattgtt ccttattatt ggattagagc gattggtgga
     4681 ttgttgtatc ttatcggttt ctttatgttt acttataata tttacaaaac aattgcttgt
     4741 ggaagagtgc ttgataaaga accaaaaagc gcttcgccta tggcagcata aaaaggagaa
     4801 aatatgttta gttggttaga aaaaaatcca ttcttttttg ctgtagctgt ttttgtagtg
     4861 attgcttatg caggcatagt tgaagtttta ccaaattttg cagaaaatgc aagaccaatt
     4921 gaaggtaaaa aaccttatac ggttttacaa cttgcagggc gtgcagtata tattaaagat
     4981 agttgtaatg cttgtcattc acagcttatt cgtccattta aatcagaaac agatcgttat
     5041 ggtatgtatt ctgtaagtgg tgaatttgct tatgatagac cttttctttg gggctcaaaa
     5101 agaacaggac ctgatcttgc tcgtgtagga aattatagaa cggctgattg gcatgaaaat
     5161 catatgtggg atcctacttc tgttgttcca gattctatta tgccttcata taagcatatg
     5221 tttaaaaata atgcagatat tgaaactgct tatgctgagg ctttaactgt gaaaaaagtt
     5281 ttcaatgttc cttatgatgc agaaaatgga acaaaacttg gttcttggga ggatgcacaa
     5341 gctgaagtaa aagctgaagc tcaggctata gttgatcaaa tgaaaaatca agaagtaaaa
     5401 gatgcttttg ctaaaggtga aatcaaagaa atagttgctt tgatcgctta tttaaatagc
     5461 ttaaagtaag atgatggaac atttatcaat agtttttgat gtgattaaaa atttaatcac
     5521 atttgattta gcaacagttc aaaaacatga gtgggagatt ttccaaggtt atggtttttt
     5581 tgcactcgtg atgtttttgt caatagtatt atatgcgtat tggtatcatt tatatagaac
     5641 agaaaaaaaa ggcgagagaa attatgaaaa ttatgcaaac cttgccttaa aagatgatat
     5701 tgatgatagt gtattagaaa gtaaaaggag tgcttaatgc aatggttaaa tttagaagat
     5761 aatgttaatc tcttatcttt aattggagct attcttatca ttttaatcac actagttatt
     5821 gtgggtagaa tgtttaagca aatgaaagaa aaaaaaggcg agtcagagct tagtgaacat
     5881 agttgggatg gaataggaga gtataaaaat gctgttccta ctggttgggc tgtggtattt
     5941 ttcctgacta ttgtttgggc tatttggtat tttctatggg gatatccttt aaattctttt
     6001 tcaagtatag gtcaatataa tgaagaagta gcaactcata atacaaaatt tgaagaaaaa
     6061 tttaaaaatt tatctcctga agataaaata gcaatgggtc aaaatatctt tttagttcag
     6121 tgttcggctt gtcatggaat tacaggagat ggtatcaatg gtaaagctca aaatttaaat
     6181 atttggggta gtgaagaagg tataatcaat gtaattaaac atggttcaaa aggtatgaat
     6241 tttccaggtg gagaaatgct tggtgctgct gatttaggtg tagcagaaga agatatccct
     6301 gctattgctg cttatgtagc aaaagatctt tcagctatta agaaaactgc aaatgaaaat
     6361 ttagtagcaa aaggtaaaga agcttatgca acttgtgcag catgccatgg agaagatgga
     6421 aaaggtcaag atggaatgtt cccagatctt acaaaatacg gttctgcagc ttttgtagta
     6481 gatgttttac atagtggtaa ggctggtttt ataggaacaa tgccgagttt tccaacactt
     6541 aatgatattc aaaaagaagc tgttggcgag tatgtaattt ctctttcaag gggtgaatga
     6601 tggaaaataa taatagatgc gtgttttctc tttcaggtgt tacaggtatg ttaattgcta
     6661 cggttttgtt gcttgttatc ttagcagttt taactatttg gggtcttaaa gctcagcaag
     6721 aagtgatgca aaagccatat agtcttaaag atgtacaaag tgtaaagatg tttggttcaa
     6781 aagaacaaga tcatagaagt ataaaggaag cacaatgagt aaggctttgg aatatttaat
     6841 tgttattggt ttagttgctg ctgctgcaat caccgcttgg tcggttttga ccgtaaatca
     6901 tcttcatata ggatgaaaaa aatattacaa gatggctttt ttttagctat cttcttcttt
     6961 gttttattgc cttctagggt ttttgctctt gatgctgtac tttttaatga aaatatttta
     7021 agtcaaaaag taagtaacga gattaatctt ataggaaaag agctttacca aaaaagtaat
     7081 atttttatcg gcgttatggt tggtgataaa actgaaattg aaactttatt aaataaacaa
     7141 aaagaacttc ctcaatctta tatattgctt cttttgtcaa aaaattctca caaagttgat
     7201 atagtgggct caaaaggtgc tttagctttg attgataaag aagctgtgct tagtccttat
     7261 cctggaacag gatctatttt gccgatatta gctacaaata aaggtgatat ttataatgct
     7321 gctatactta atggttatgc agatattgta gatcgtgtgg caaaatcctt gggattacaa
     7381 ttagaacatt ctataggtaa tgcaaatcgt gatactatca atattttaag aatacttatc
     7441 tatggattta tttgctttgc attgttatac tatgcacaaa gaagaataaa gaggaaaaaa
     7501 aatgttagaa actaaaaaaa gtttttggcc ttatggtatt ttgctttcac ttttggctat
     7561 aattattgct tgtattgtaa cgatttttat agcaagtcac catcctgtgt atgaggatga
     7621 tttttatttt gactcttatc aaaatgttga aaataattac aatcaaatac aaaaacaaca
     7681 agtaaatttt gataaatttt ttaaagtaaa ttttcaaaat gataaaatca cttttatagg
     7741 taaaagaaaa attcctagtt atgaagtgga tcaaaattcc tatgttgcaa attttaaaat
     7801 ttctgcatta caaaatataa attctaatga tttaaaagtt caagttcttc ttacaagacc
     7861 attcactaaa aattttgatc aaaagttaga aggacaagtt aaaaatggaa ttttaagtat
     7921 cgctttacct aaattagata aaggtagatg ggagcttaag ctaaagtttt atgcaaatca
     7981 agaaacagtg ggttttttta gctacgaatt aaatgctcaa tgaaattaag aatttttagc
     8041 tcttcaaggc aaattagaga atattataat caaaaaaaac agcaaaatgc tttattagat
     8101 agtgctattc atataggtga atttttagat aaagtttgtt tgagcaattt tcataaagca
     8161 agttcttatg aaagtttgct tttaatgcaa gaagcttgtc taaaaagtaa ggatttagaa
     8221 aaaaaactag gaatttcggt agaatttttt gcttttttga aaaataacga atatcttttt
     8281 tcttttttta aagaactgag tttggaaaaa aaaagcatag aagatcttaa aaacaatgat
     8341 tattatgcca cctataatga acatttggaa attttagatg aggtatataa gaattatctt
     8401 gctttgcttg aaaagaattc tttttatgat gatctttctt tacctaaaaa ttacactctt
     8461 aataaagatt ttttagatga gtatgaagct atagtttatg atttgcaagg ttttttaagt
     8521 aaatttgaag aaaatttatt aagtgaaatt tctcagatta aagaagtggt tttaagtttt
     8581 aaaacgagta aatttaatct tgaatatctt ttaaaacttg attttttaaa aatatttgat
     8641 ttaaaaataa acactcatta tgaaatcaat ctttcaaaac aagagatctt aaaagaagaa
     8701 atttttaaaa caaaaaattc aaaaatgaaa ctcaaatctt ttgaattaag ggctttgcaa
     8761 tgtgcttttg ttatggatga aatttcacat tttgtacgca aaggtttaaa gcctgaaaat
     8821 attgcagtta taactccaga tgaaagtttt tgtgagtttt taagactttt tgataaagac
     8881 aatatgctta actttgcaag tggaattagt attaaagaga gtttgtttta tcaaaaattt
     8941 caagcacttt atgaaagtgc tagtagtgct tcttttgtct ataaaaatca agaggattat
     9001 tttgaagaca cgcagatgat ttttgattat cacaatacgc ttttacattc tttaaaactt
     9061 gattttatag agtttaaaaa gtattttgat gagaaatgtg attttgaata ttttgaaaaa
     9121 ttacttgctt tgtttttaga aaatgaaaag caagagctta tgtatttgat acgaaaagaa
     9181 ctttatttta ttaaagattt attgaaaaat cagtctttaa ctcttaaaga gttgatccat
     9241 ctttttttca tgcaaatttc acaactttcc cttagtgatg taggtggagg taaggttacg
     9301 gtaatgggac ttttagaaag tcgtgggctt tgttttgatg gagtgatttt ggttgatttt
     9361 aatgaagaat ttattcctaa aagaagtgtt aatgagcttt ttttaaacaa tgaagtgcgt
     9421 aaaaaagcag gattgattag ctatgataga agagaaaatt tacaaagatt ttattatgaa
     9481 agcttgatga agaatgcttt agaagtaagt atttgctttg tggaaaatga agaaaaaagc
     9541 aaatcacgtt ttttagatga acttgatttt gacttttttt atgaaactca tatccaccaa
     9601 aaagcttatc ttaatgcttt aaaattagac tatgaaggca taaaacctaa tctaactcct
     9661 ataaaagctc ctattttaaa gcataatcct ttcgagtttc cgctttcttt tagtcgtttt
     9721 aatttattgg aaaatcaaaa aagaacttat tattatcgtt atattttaaa tttagcagaa
     9781 cctagggttt taagcgagga aagcaaagcg aaaaatcaag gaaattttat ccataaaatg
     9841 cttgaaattt attataaaaa ttatgcaaat aatgattttg atataaaagt ttttgcaaat
     9901 ttattggata aagaatatca aaaatacaat atcagtgaac ttgatcttga agtatttaaa
     9961 ttaaaattta tgcaatttgc taaaaatgaa aaagagcatt tttcaaaagg cttttatgtc
    10021 gtacatacag agcttgagtt aaacaatatt ttaaagctcg gaacagatag tataaaactt
    10081 aagggtacta tagatcgtat cgatagttca aaagaaggta atttgattat tgattataaa
    10141 agtggaaaag tgccaagtaa ttcttatcaa cttgcttttt accaagcttt atatgatgaa
    10201 aatgcaagcg tgggttttta tgatttaaat agtatgcaaa tattgcatca aaaagccaaa
    10261 agtttagatg agctaagaga aagacttaaa gatttagttc ttatgagtaa ggaagaaata
    10321 gagtttgaaa atgaacaaga tgagtattgt ccttataaac tcatttataa aaaggaatta
    10381 aaatgagtca atttgagcct tttttggcat tagaagcgag tgcaggaagc ggaaaaacct
    10441 ttgccctgag tgtgcgtttt gtagcactta ttttaaaagg agctaggatt aatgaaattt
    10501 tagctttgac ttttaccaaa aaagctgcta atgaaatgca aaaaagaatt attgagactt
    10561 ttttaaactt agaaaaagaa aataaaacca gtgaatgcaa tgaactttgc aagcttttag
    10621 gtaaagataa agaagagctt atttctttaa gagatgctaa aaaagaagaa tttttaagaa
    10681 cagagttaaa aatcagtact tttgatgctt ttttcggaaa aattttgcgt gtttttgctt
    10741 taaatttggg cttaagtagt gattttacaa tgagtgaaga gaggcttgat gtaagagaga
    10801 tttttttaaa acttcttaaa aaagatgaat taaaagattt ggcttattat attaatttag
    10861 ttgatgagaa agaaaatttt tttaacgagc ttgaaaaatt ttatgagaat gcttattttc
    10921 aaaatcgtcc taaaattcta aatccaacta aagcttatat caataaagct tatagtgagt
    10981 taagaagtta ttgtttgggt cttactcatg taaaaaatta taaaaatttg tgtgacaatt
    11041 tcaaaagtga agttttagat ttatccgtgt ttatgcaatc aagttttatg acaaaatttg
    11101 aaagtacaaa atatttacaa gatttagaaa gtactaactt gcattttagt gcaaaaagaa
    11161 tggagtttat aaatgcttta aatacctatg ccatagagct tgaaaattat aaaattgcta
    11221 atttaatgaa tcttttaaat cattatagtg aagctaaaaa tatatttcat aaagataaaa
    11281 ataccttaaa tttccaagat gtgagtaaaa aagtttatga gttaataacc agtgaattta
    11341 aggatatgat ttattttcgt ttagatggtt ttatttcgca tttgcttatt gatgaatttc
    11401 aagatacaag cgtgatccaa tatcaaattt tacgcccttt gatcgctgag cttgtttcag
    11461 gagaaggggt taagaaaaat cgcacttttt tttatgtagg agataaaaaa caaagtattt
    11521 atcgctttcg taaaggaaaa aaagaattat ttgatttgtt aaaacaagaa tttagtcaaa
    11581 ttaaaagtga taatttaaat actaattatc gttctaaaga gcttttggtt gattttgtta
    11641 atgaaacttt taaagaaaaa atcaaagatt ataaagaaca atttgcctta gaaagtaaaa
    11701 aaggcggttt tgtgcgtatt gtggagtcta aggaacaaaa ggttaaaaac caagcccaag
    11761 aaattaagga aaagacttta gaaactttat ttgagcaaat taatttttta agatctaaaa
    11821 atatttctta tgatgatatt tgtattttgt gttggaaaaa tagcgatgca gatatggttt
    11881 tggatttttt aagagagcaa aatattcctg catttactca aagtaatgtt ttgcttgaaa
    11941 ataaagcaag tgtaagactt gttttagaat atgctaaata ttgtattttt ggtgatgagt
    12001 tttacttggt atttttaaag gaacttttag gttttgagcc cagaaaaatt acccttgatt
    12061 tttcaaaaaa tgctatggaa aatgtacttt ttttaataaa agaattaaaa cttgatttaa
    12121 atgatatcgc tttaatacaa tttatcgaat atgctaaaac taaggagaat tttttaaagc
    12181 ttttatttga gccttgtgct ttgaaaatag taagcgaaca aaatatggga attagtatta
    12241 tgagtgtgca taaatctaag ggtttggaat ttgatcatgt gattttactt gatagtttat
    12301 ctaaaaacaa ttcaaacaat gaagatatca tgcttgaata tgatatcaat caaggttggc
    12361 aactccatat taaagataaa attcgagagc ttactaaaga gcctatttat actcttttta
    12421 aagaaaatat tacaagagca aattatgaag atgatattaa taaactttat gtggctttta
    12481 caagagctaa ggaaagtttg atcatcataa aaagaaatga agaaagtgta aatggaaatt
    12541 atccaagtta ttttaagggg ggatttttaa atatacattc tcaagagaga ggttttttag
    12601 aaagcaaaga acaaatttta agcgttaaaa aagaaagcat tcaaactttg caaaaatttg
    12661 aaaaaattac cttgcaagaa attcaaagcg aagaaaggct tgatagtaaa gaactatatt
    12721 ttggaaatgc ttttcacttt tttatgcaaa atttaaaact tcctaagggt gaaaattttc
    12781 aaatacttac tcaaagatgc aagagtaaat ttagacattt tttagatgag agtgattttg
    12841 aaaagctttt taaaagaatt gaaattttac ttaaaaatat tcaatttcaa aatttgattg
    12901 gtgatggaaa gcttttaaaa gaacaagctt tgagttttaa tggagaaatt aaacaattag
    12961 acttgcttgc tttaaaagat gaagaagctt ttataattga ttataaaaca ggtcttgcta
    13021 tgcaagataa acataaagag caggtaggaa cttataagat cgccattagt gaaattttgc
    13081 aaaaagataa agtgcgtgct tttatagttt attgtttgga aaatgaaatt caaattttgg
    13141 aaatataaac tttattttta cttaaattaa gtaaaaatta atattatttt ttatacaatc
    13201 acattttaaa tttttggcaa aggtaaaaat tatgacaaag ataacaaagc caaacgaagt
    13261 aaaacgagaa tggattgttt tagacgcaga aggcaaacgc tttggtcgtc ttttaactga
    13321 agtagcaaca attttgagag gtaaaaacaa accttgcttt actccaaatg ttgattgtgg
    13381 tgattatgta attatcatca atgcttcaaa agctgtattt acaggtgcta ataaagcaga
    13441 agataagctt tatcatagac attcaggata ttttggaagt gtaaaaagcg aaaaatttgg
    13501 tgatttactt gaaaaaaatc ctgcaaaatt atataaatta gcagttagag gtatgcttcc
    13561 taaaacaaat ttgggcagag ctatgcttaa aaaattaaaa atctatgcgg gtagtgagca
    13621 cccacacact gcacaaattg ctaaagaagg aaaataatca tggcaacaac atacgcaaca
    13681 ggtaagagaa aaactgctat cgcaaaggta tgggtaaaac caggtagtgg taaaattagt
    13741 gttaatggtg ttgatttaaa cacttggctt ggtggacacg aggcgattaa gcttaaagtg
    13801 gttcaacctt tacttgtgac taaacaagaa acttcaatgg atattaaagc aactacttta
    13861 ggcgggggct atagtgctca agctgaagct ttaagacatg gaatttcaag agctttagca
    13921 gctatggatg ctgattttag agccttatta aaacctaaag gacttcttac tagagatagt
    13981 agaactgttg agcgtaaaaa atatggacgc cgcaaagcaa gaagaagccc acaattctct
    14041 aaacgttaat atttttggtg ggattttccc acctttctac aattttttat aaaactcatc
    14101 cttttttcta tcatttatgt tataattgca aaatttaaat ttttatttta taacacaatg
    14161 aaaggttttt tctatgaaaa aaatattctt atgtttaggt ttggcaagtg ttttatttgg
    14221 tgctgataac aatgtaaaat ttgaaatcac tccaacttta aactataatt actttgaagg
    14281 taatttagat atggataatc gttatgcacc agggattaga cttggttatc attttgacga
    14341 tttttggctt gatcaattag aatttgggtt agagcattat tctgatgtta aatatacaaa
    14401 tacaaataaa actacagata ttacaagaac ttatttgagt gctattaaag gtattgatgt
    14461 aggtgagaaa ttttatttct atggtttagc aggtggagga tatgaggatt tttcaaatgc
    14521 tgcttatgat aataaaagcg gtggatttgg acattatggc gcgggtgtaa aattccgtct
    14581 tagtgattct ttggctttaa gacttgaaac tagagatcaa attaatttca atcatgcaaa
    14641 ccataattgg gtttcaactt taggtattag ttttggtttt ggtggcaaaa aggaaaaagc
    14701 tgtagaagaa gttgctgata ctcgtgcaac tccacaagca aaatgtcctg ttgaaccaag
    14761 agaaggtgct ttgttagatg aaaatggttg cgaaaaaact atttctttgg aaggtcattt
    14821 tggttttgat aaaactacta taaatccaac ttttcaagaa aaaatcaaag aaattgcaaa
    14881 agttttagat gaaaatgaaa gatatgatac tattcttgaa ggacatacag ataatatcgg
    14941 ttcaagagct tataatcaaa agctttctga aagacgtgct aaaagtgttg ctaatgaact
    15001 tgaaaaatat ggtgtagaaa aaagtcgcat caaaacagta ggttatggtc aagataatcc
    15061 tcgctcaagc aatgacacta aagaaggtag agcggataat agaagagtgg atgctaaatt
    15121 tattttaaga taatgaataa aactatttta tttgatttag atggcacttt aattgattct
    15181 actgatgcta ttttaaattc tttccaagga gcttttaaag cccttggatt aacttctaaa
    15241 aataatgaag aaatcaaaaa tctcataggt tatcctttag agcaaatgtt tagaatgctt
    15301 tatccagata aagtaaattt aagtaaagaa tttgtattag cttatcgtga aatttatgca
    15361 caaatttatt tagaacaaac cactcttttg cctaaagcaa aagaagcatt agaacttgga
    15421 agcgaaattg cagatcttgg tatagttaca acaaaaggag gtaaatttac tccgattctg
    15481 cttgattatt tgggagttaa aaaattcttt aaaactttaa ttactcttga agatgtcaca
    15541 aatccaaagc caagttccga acctataatt ttagccttaa aaggactcaa taaaactcaa
    15601 gaaaatgcct atatgatagg cgatacaata ttagatattc aagctgcaat ttctgctaat
    15661 atcactcctt tggccttaac ttgtggctat ggcaatgaaa atgaattaaa agctcattct
    15721 atggtatttt taaatgcata tgaggctgtt aattatatag ctagattaaa ctaatttcaa
    15781 gttttcgtta aacgcctttt aagagaattt atagtaaatt gatagttaaa aaattataaa
    15841 aattatcaat ataaaggaag gtctcaatgg gtaaaattat gaaaactatg gacggaaatg
    15901 aggctgctgc atacgctgcg tatgctttta ctgaagttgc tggaatttat cctattacac
    15961 ctagttctcc tatggctgat tataccgata tgtgggcagc tgcaggaaaa aaaaatcttt
    16021 ttggagttcc tgtaaaaatc gtagaaatgc aaagtgaagc aggagctgca ggtagtgtgc
    16081 atggatcttt acaagctggg gctttgacta caacttatac ggcttctcaa ggattactcc
    16141 ttaaaattcc aaatatgtat aaaatagcag gtcaattact cccctgtgta atccatgtag
    16201 cagcgcgttc tttggctgct caagctttgt ctatctttgg tgatcatcaa gatatttatg
    16261 cagcaagaca aattggtttt gctatgcttt gttcgcattc tgtgcaagaa accatggact
    16321 tagctggtgt agcacattta gctgcaatta agggaagagt gccattttta catttttttg
    16381 atggttttag aacaagccat gaaattcaaa aagttgaagt aatggattat gcgcattttg
    16441 atagattatt agatagagaa gctttgcttg aatttagaaa taatgcttta aatccagaaa
    16501 atccaaaaac acgtggaaca gcacaaaatg atgatattta ttttcaaact agagaagtaa
    16561 gcaatcgttt ttacgatgct ttacctgatg ttgttaatga atatatgcaa gaaatttcaa
    16621 aaattacagg tagagaatac aaaccattta cttattatgg tcacaaagag ccagagtgtg
    16681 tgattgttgc tatgggttct gtaactcaag cacttgaaga agtggtggac tatcttaatg
    16741 ccaagggtga aaaggtaggg attttaaaag tttatcttta tcgcccattt agtttaaaat
    16801 atttctttga tgttatgcca aaatcagtga aaaaaatcgc ggttttagat agaaccaaag
    16861 aaccaggaag tctcggagaa ccactttatc ttgatgtaaa atcagctttc tatggaagag
    16921 aaaatgctcc tgttatagtg ggtggaagat acggactttc ttcaaaggat gttgatcctg
    16981 ctcaaatgat agcagtattt gaaaatctta aacttgataa tccaaaagat ggctttactg
    17041 taggtataat tgatgatgta actcatactt cactgagtac tggagagaaa atttcacttg
    17101 gagatgaaag tacgatcgaa tgtttatttt acggacttgg tgctgatgga actgtgggtg
    17161 caaataaaaa ctcgattaaa atcatcggag ataaaacgga tttttacgct caagcttatt
    17221 ttgcttatga ttctaaaaaa tcagggggtt atacaagaag ccatttaaga ttttctaaaa
    17281 aacctatccg ttcaacttat cttgtttcaa ctccgcattt tatcgcttgt tcggtagcgg
    17341 cttatttgga aatttatgat gttttagcag gaattcgcaa aggaggaact ttccttttaa
    17401 atagtatttg gaatgctgaa gaaaccataa gacaacttcc agatgcagta aagaaaactt
    17461 tagctgaaaa agaagtaaat ttttatatca tcaatgcaac caaactagct cgtgatatag
    17521 gtttgggaaa tcgtacaaat accattatgc aatcagcctt tttcaaactt gcaaaaatca
    17581 ttccttatga agacgcacaa aaatacatga aagagcttgc gtataaatct tatagtaaaa
    17641 aaggcgatgc tattgtagaa atgaattaca aggctattga tgtgggtgct gatggacttg
    17701 taaaagttga agtggatcca aattggaaaa atttagagct taaagaaaaa gaacaaacca
    17761 atgcctataa aggtactgaa tttgttgaaa aaatcgtaaa acctatgaat gcggctaagg
    17821 gtgatgattt acctgtttca gcctttttag gttatgaaga tggaagtttt gaacacggca
    17881 caaccgaata cgaaaaacgc ggtgttgggg ttatggtacc aagatggata gaggcaaatt
    17941 gtattcaatg caatcaatgt gcttcagttt gtccgcatgc tgttatcagg ccatttttga
    18001 ttaatgatga agaaatggca aatgcacctc gcggtgtaaa agatcatgct ttagaagcta
    18061 aaggaaccaa aggagaaaaa ttaagcttta aaattcaagt ttctccactt gattgtacag
    18121 gctgtgagct ttgtgttcat gagtgtccta ctaaagaaaa atctttggtt atggtaccac
    18181 ttcaagaaga gatggatttt ggtgagcaag aaaatgcgga ttatttattt aaagaaatta
    18241 cttataaaga tgatatttta aataaagaaa ccacaaaagg agcgcaattt gcccaacctt
    18301 tatttgaatt ccatggggca tgtcctggat gtggggaaac tccttatatt actttaatta
    18361 caagattgtt cggtgaaaga atgattgtgg ctaatgctac aggttgtagt tctatttatg
    18421 ggggttcagc tccatcaact ccttatagaa aaagtgtgaa aaatggacac ggtcctgctt
    18481 ggggaaattc actttttgaa gacaatgctg agtttggttt gggtatgaaa attgcaactg
    18541 aaaatacaag acaccgcatt gaacatatca tgaatgaaag tatgcaagaa gttccaaatg
    18601 ctttatcagc tctttttaaa gattggattg caaataaaga caatggtgct atgtctgtgg
    18661 aaattaaaga taaaatgatc cctattttag agcaaaataa aaatattaaa gctgtacaag
    18721 atatattaga gcttaaacag tatttaagta aaaaatctca ctggattttt ggtggtgatg
    18781 gttgggctta tgatataggc tatggcggac ttgatcatgt tttagcaagt ggagaaaatg
    18841 taaatatttt agtgcttgat acagaagttt attctaatac aggcggtcaa agttcaaaat
    18901 cttctagaac aggagctgta gcacagtttg cagcagcagg caaacctata cagaaaaaag
    18961 atctaggtca aattgctatg acttatggtt atatttttgt agcacaagta aattcaacgg
    19021 caaattatac tcatcttatc aaagctatca ctgcagctga ggcctatgat ggaccatctt
    19081 tggtgatttg ttattctcct tgtatagctc atggtattaa aggtgggctg ggttactcag
    19141 gagagcaagg tgagcttgct acaaaatgtg gttattggcc actttatacc tttgatcctc
    19201 gtttagaaga gcaaggaaaa aatcctttaa ctctaacagg aaaagaacct gattgggatt
    19261 tatatgagca atttttgatg aatgaagtgc gttataattc acttaaaaaa gcaaatcctg
    19321 aacacgctgc tgagcttttt gaacgcaata aaaaagacgc tcaacgtcgc tatagacagc
    19381 ttaagcgtat tgctatggct gattatagca atgaggtcga aagctgataa aatatatttt
    19441 tagtgctaca ttgtgtttta gcactttgtt tgcacaagat aattttgaag agtattttaa
    19501 acttatagat aaagaaaatc gtataaattt taatactctt caaaacccat ttgtgaatcc
    19561 tacttttgaa aaattaagac atattaaaat tactgcaatt atgcttgata aagtaaaaat
    19621 ttatgatcga tggtataaaa aaggtgatat gattgatgat gctataatat atgaaataaa
    19681 tactaaagag attaaattcc aatatgataa tttagaaatt gcaatccaaa taaataaaaa
    19741 tgataagatt aatattaata ttaattaaca ttcttttttg ccattatctt tatgctttag
    19801 attgtcaaaa gcgtcttttt gatatcagta ttaacgaaaa attaagcata caagaaagtc
    19861 ttgatgagct tgcaaaatat tgttctttca gtattattgt taaagataaa attgccaaag
    19921 aaaaattaga aacattgcaa aactctgtca atattcatca aatgagtttg gacgaaattt
    19981 ttaatttttt tatcaaagag catgatctta gctatgattt tgatggtaaa attttaagaa
    20041 tttcaggcat taatacgaag atttttaaga taagttatat cacttctatc agagaaggac
    20101 aaagcataac taaagcgtct gtagacgcta aaccaaggca aagtgaatat agcggtagtt
    20161 ttgatgatgc agaagacaac atgattaaaa gtatggaaaa atttgatttt tggcaaaata
    20221 tagaaaaaga gattattgta ttattaaaaa attctcatga agattatgag gctaaaactc
    20281 ccattataaa tcccaatgca ggtcttatta tagtaactgg aacaaattct cagttaaaaa
    20341 gtgtgaaaaa ttatttgcaa aaactagaaa atcgtcttaa aaaacaagtt attatcgatg
    20401 ttagcatact tgctgtgagt ttaaatgaaa gccattctag tgggattaat tggcaaaatt
    20461 ttaatatagg tttaaattca caagtaaata atgaaaattc ttttattcag tttcaaaatg
    20521 ggcaaggttt tgttaagaat ttgggtttaa gggcgaattt aaattttgat tctattatta
    20581 actttctttc tcaaaatgga aaaactagcg tgctttctaa tccaaagctt atggctttaa
    20641 ataaccaaca agccattatt tctgtaggcg atactataaa ttatcaagtt aaagaaagtt
    20701 ctaaaggtac tgaaaatggg actactgtta gtgaaagtta taataattat tctatttttg
    20761 taggcatttt actcaatatc ttgcctgaaa tttctgatga tggaaaaata atgcttagga
    20821 ttaatccaag cttaagtgat tttaagtatc cagaagataa taaacgacaa aaagaaccaa
    20881 gaactattgc tcctgatacc atacaaaaaa agctttctag tgttgtgcaa gtagagaata
    20941 atcaaacttt aattttaggc ggattgattt ctcacgataa atctaatgag aaaaattcta
    21001 tcaattttct atcaaaaatt ccaatcctag gttctttgtt taaaggagaa gttttaaatt
    21061 ctaaagcaac cgaaatcgtt tttattatca ctccaagtat agtagatagc gtaaatgctc
    21121 caagtcttaa agatctagga tttaagcatt atgagtaaaa ttattccatt tagagaagaa
    21181 atttttcatc aaatcaatca aattttagaa agccaaaaag cttttatttt tttatgggga
    21241 aaaagtggta gtggtaaaag tgtattgttg caaagattgg caaaaaaata taatgttgat
    21301 tttattaatg aaaattttaa agatcagagt ttcttaaaag aaaaaattga gtttttgatt
    21361 tcacaaggtc agagtttaat cattcttgat gaagtgggaa tgtatgatta tgcaatgcta
    21421 gaaagcatca ggatttatag tgattctata agttttgttt taagttctca taaaaagtta
    21481 aatatactta aaaaagagca ttttaaaagt cgtttaagtg cttgttttaa attgaaaaat
    21541 attagtcttt tagaacttga tgattatatt aaattgaaat ttggaatgaa tttttcaaat
    21601 aaatgtctta agtttttaca aaaaatttct caaggaaatt taagatatat tgataaaact
    21661 ttaaaaagtt tttatgagat aaatagtttt tttgataaaa acaaaagtca agagtatatt
    21721 ttaaagctta gtgctttaga gaatggctta ttaaggtaag atatgcaaga aagaattaaa
    21781 gagcttgagc ttaggtataa atacttttta cttaaaaaat atttaaaata tttattatta
    21841 attattctaa tatcagtaat agcattttgt ttttttgtgc taatgcaaaa atataataag
    21901 caaaaaaata tttatttgca ggctattgaa cataaaaagc atttggagca aaagattctt
    21961 caagcgcaaa ttttacaaga aaaaaataag atttctaggg aaaagttata taaagaacta
    22021 gaagaagtta aagcggtgca ggaaaataca catattagca agatagaaat tgattctaaa
    22081 attttaaata tttctgattt aaaaaaatct ttttatcaaa atccaagcta tgaaaaggca
    22141 ttaaatttag ctaagaagta ttttgatatt aaagcttatc aaaagacaat attttgggct
    22201 ttaaaagcca atgaacttga caagcaaaaa caagattctt ggctgatttt tgctcaggct
    22261 aaaagagctt taggtgaaga aaaagaagct caaagtgctt tagatgctta tataaattat
    22321 tatggtttaa tggaattaga tggaaagtag aatggataaa atttttcaag cttatattga
    22381 taatgaaata agtcttgatg aaatttgcac taaatttaat atcacttctt gggatttttt
    22441 taacaaatta gcaaattttt gtaatttaca ttttgttgat ttagatgaag ataatgattt
    22501 tatttatgaa ggtatacctt tttctttact tttaaaattt aaatttctgc ttattaaaaa
    22561 caatgacggc tttatgatta ttagatccaa accttgttct ttagagcttt tagagcaagt
    22621 taagactttt atgatttgtg aaaaaatcga cactgcaatt gccgatgaat taaagatagc
    22681 taaaatttta aatcaaattc gcattcaaga ggagattaaa agattaagca ttaagcttag
    22741 acttgaatgg caagaaaatc acaaaagaga tgaccaaagt tgcatcagtc aaatttttga
    22801 ttttttatta catgaaattt tatcttttca tgcgagtgat attcatatag aggcaagaaa
    22861 taatgatgct ttgattaggt ttagggttga tggaattttg cgtgaatttg ctatttttga
    22921 gaaggatatt tatgaagctt tggtttttca tgtcaaattt ttagcttgtt tgaatttagc
    22981 tgaatcaaga aaaacacaag atggaagttt tgaattagat tttgaaaatg aaagatatga
    23041 ttttcgtgtt tcatgtttgc ctttgattta tggcgaaagt gttgttataa gaattttaaa
    23101 acatgataaa gaaattttgg atttgtataa actaaatctt ggaaataaaa atttagaaat
    23161 tttaaaaaag attttacatc gtcccaatgg aatgatttta ttaaccggtc ctacaggtag
    23221 tggtaaaagc acaactttat acgcgtgttt aaatgagttg aaaagtattg aaaaaaagat
    23281 tatttccgca gaagatccta tagaatataa aattccttta gtgcagcaaa ttttgctcaa
    23341 ttcaaaagtt ggagtcgagt ttaatagtgt tttaagagca attttaaggc aagatcctga
    23401 tattatcatg ataggagaaa ttcgcgatga agaaagttta gatattgcac ttaaagcttc
    23461 tttaacaggt catttgcttt taagcacctt gcatactaat gatgctctta gtaccattga
    23521 taggcttttg gatatgcaag caaaaagtta cttgatagca tcggctttga gtcttgttat
    23581 agcacagcgt ttggttagaa aactttgtcc ttggtgtaag caaaaaagca aaaaacatta
    23641 tattgaattt gaaggtgaat tttttgaacc aaaaggatgt gagcgttgtc atcatagtgg
    23701 attttttggc agagaattaa tcgctgagtg cttagagatc aatgaagatt tagcttgtgc
    23761 aattagggaa aatcaagata aaacgatttt aatggagctt gcaaaaaaat atggctttca
    23821 aactatgttt gaacaaggtt taaaaaaagc caaagaaggt cttacaagta tagatgagct
    23881 tttaagggtt gtaagatgaa attttatgaa gtagaatttc ttaaaaacaa tcaaaattat
    23941 acaaaaacta taaaagctga aaatttaaat acagcacaag caaaagcctt atcaaagaat
    24001 tggaaaatca ttgatataaa agaaattcaa aaatctaatt ttcagagatt aaaggatgaa
    24061 aattttatac tcttttttaa agagctagct ttgttgtgtg aagttggatt aagtgttcaa
    24121 gaagcgatta gagaattata ttttatgcat tcttgcaaga ttatgaaaaa aatattagac
    24181 aatttaattt tagcccaaaa tctaaatcaa gcttttgaaa atgctaattt tggattaaat
    24241 cgtgcggagt tagctttgat taaaacggct gaaaagacag gaaaaatcag tgaagtgttt
    24301 agtcaaattt ctaaacttcg agaaaaaagc ttagagagtc aaaaacaatt aaaaaaggct
    24361 tttagatatc ctactttggt ttttttaagt attatcggag catttttgtt tttaatgctt
    24421 tttgtagtgc ctaattttaa agatttattt gaaaatttag gcgcgagttt gccttttatc
//
LOCUS       DARBAR010000011        23233 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.011, whole genome shotgun sequence.
ACCESSION   DARBAR010000011 DARBAR010000000
VERSION     DARBAR010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23233)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23233)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23233
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.011"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..576
                     /locus_tag="SB815_000308"
     CDS             <1..576
                     /locus_tag="SB815_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG0906083.1"
                     /translation="QVVQNKENNANFNNNTTNKETFTQEQTKTHSENVDKNSLDELNS
                     LVKDLNKVTQNNARNITPKETLQYFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVT
                     LIQRGNNLHINFNSNANAMNLFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQG
                     KNRSGYGFKDALDGKNESEKVNLELVLAKYF"
     gene            630..1514
                     /locus_tag="SB815_000309"
     CDS             630..1514
                     /locus_tag="SB815_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HEG0906084.1"
                     /translation="MISSSDWNLNATATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            1518..3155
                     /locus_tag="SB815_000310"
     CDS             1518..3155
                     /locus_tag="SB815_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG0906085.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKEGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(3159..5030)
                     /locus_tag="SB815_000311"
     CDS             complement(3159..5030)
                     /locus_tag="SB815_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG0906086.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKKQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNIDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPNAIEMKFSNLY
                     HDIIKKYNHLSISYKKFIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(4945..5751)
                     /locus_tag="SB815_000312"
     CDS             complement(4945..5751)
                     /locus_tag="SB815_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG0906087.1"
                     /translation="MEVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKKLLEHSDNI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTYDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGGIDEFSSKNLRNFQSFRKFKSRTSKHRTNS"
     gene            5931..6028
                     /gene="ffs"
                     /locus_tag="SB815_000313"
     ncRNA           5931..6028
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="SB815_000313"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            6265..6400
                     /locus_tag="SB815_000314"
                     /pseudo
     CDS             6265..6400
                     /locus_tag="SB815_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
     gene            6561..6959
                     /locus_tag="SB815_000315"
     CDS             6561..6959
                     /locus_tag="SB815_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG0906088.1"
                     /translation="MKDALSGFSNSLIWFIVISIIVARGVIKTGLGEHLAYHFISILG
                     KKTLGIAYSIAFCETILAPVTPSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTY
                     LSLVNYQEPILFHQLCLLQLQLQILWWLIL"
     gene            7013..7237
                     /locus_tag="SB815_000316"
     CDS             7013..7237
                     /locus_tag="SB815_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG0906089.1"
                     /translation="MFLPGIAAMLLMPLMLYFLSPLEIKSTPNASTFAKDKLKELVKM
                     KNSEKIILSVFVSLLLLWAGALGLFFWNFS"
     gene            7152..7415
                     /locus_tag="SB815_000317"
     CDS             7152..7415
                     /locus_tag="SB815_000317"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG0906090.1"
                     /translation="MKKSYSVFLSRFYFYGLELWACFFGISLDATSVALLGLSLVLIS
                     GVLTFGEVLAEKAAWNTLVWFSALVMMATLFGKLGVTQFLAEA"
     gene            7538..7783
                     /locus_tag="SB815_000318"
     CDS             7538..7783
                     /locus_tag="SB815_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG0906091.1"
                     /translation="MFFIVQLALGAPPLFYAFIMIASGNVMMALTHYAIGTAPVIFGT
                     GCVTLKKWWSIGFVISIVDIVVMIAVGLFWWKILGFY"
     gene            complement(7811..8827)
                     /gene="mnmA"
                     /locus_tag="SB815_000319"
     CDS             complement(7811..8827)
                     /gene="mnmA"
                     /locus_tag="SB815_000319"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEG0906092.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(8827..9432)
                     /locus_tag="SB815_000320"
     CDS             complement(8827..9432)
                     /locus_tag="SB815_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEG0906093.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCAQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            complement(9553..10341)
                     /locus_tag="SB815_000321"
     CDS             complement(9553..10341)
                     /locus_tag="SB815_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906094.1"
                     /translation="MINSLNSNLNYDYNTSNFKQDKNIDFKINKHGVAVITGEGALPY
                     RGKKFEYNPKIFGLDESISKKDMQEFNNFMKSNALKDPNKIEKSPLKDFNPAYTKWDP
                     TTEKMMLGFFVSYSKMFHLGYDIIKKADEFYKEFDALISKDLSLNEFKTKYIDFKQRY
                     DEFVKEYEMAMGDKMLLSSDDEIITQQSEKPFKAIQGESKNKETYKDDSTRNELVKKL
                     LEGKFSTSKELELLFGMKFSDDDAGEFNKILSLNSTPKSIDIKA"
     gene            complement(10355..10850)
                     /locus_tag="SB815_000322"
                     /pseudo
     CDS             complement(10355..10850)
                     /locus_tag="SB815_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779308.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            11284..12138
                     /locus_tag="SB815_000323"
     CDS             11284..12138
                     /locus_tag="SB815_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906095.1"
                     /translation="MKKIFLTFMVLVNCVFASDELNIDSLFKKQIGLRSITSFSLLST
                     GNANSYSLYPNITIGGDPTIWNDTKQVFLTQTFIYTLTPKFDILISGGGSYARQEYTN
                     FFTNAYSHKDRIGFDNLWLGFIYTGDSIADLIPQITFQTAVVQREKAINQTKNFYLKS
                     QSLQASLRGYSDPVVYSIYTGFGYNQSRKFKTLKIEYGNSIYVGGDLSIILSPKITLD
                     LGAEQRFQMKQKINGYQNSEVRSIPTLSLGSTYSINSDTAVSVNASFGGSSASPDSIF
                     GISLWKKF"
     gene            12123..12722
                     /locus_tag="SB815_000324"
     CDS             12123..12722
                     /locus_tag="SB815_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEG0906096.1"
                     /translation="MEKILKILLFLPILALSTKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDQKKFDELELLKIMSGQELYTDMVSFADLNDAVKKLGFQSNSYQI
                     NRENLDKLVNIPMLVKIEDDPRFPHFVIIINHKGNYLQVLDPSHGEYISSKSQFFSIW
                     DRYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(12771..13613)
                     /gene="fliY"
                     /locus_tag="SB815_000325"
     CDS             complement(12771..13613)
                     /gene="fliY"
                     /locus_tag="SB815_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HEG0906097.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAILMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(13610..14689)
                     /gene="fliM"
                     /locus_tag="SB815_000326"
     CDS             complement(13610..14689)
                     /gene="fliM"
                     /locus_tag="SB815_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEG0906098.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            complement(14689..15381)
                     /locus_tag="SB815_000327"
     CDS             complement(14689..15381)
                     /locus_tag="SB815_000327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HEG0906099.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            complement(15362..15718)
                     /locus_tag="SB815_000328"
     CDS             complement(15362..15718)
                     /locus_tag="SB815_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906100.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            complement(15737..16603)
                     /gene="flhG"
                     /locus_tag="SB815_000329"
     CDS             complement(15737..16603)
                     /gene="flhG"
                     /locus_tag="SB815_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HEG0906101.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            complement(16596..18050)
                     /gene="flhF"
                     /locus_tag="SB815_000330"
     CDS             complement(16596..18050)
                     /gene="flhF"
                     /locus_tag="SB815_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEG0906102.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            complement(18060..18533)
                     /gene="folK"
                     /locus_tag="SB815_000331"
     CDS             complement(18060..18533)
                     /gene="folK"
                     /locus_tag="SB815_000331"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEG0906103.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            complement(18536..19015)
                     /gene="aroQ"
                     /locus_tag="SB815_000332"
     CDS             complement(18536..19015)
                     /gene="aroQ"
                     /locus_tag="SB815_000332"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEG0906104.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            19106..20335
                     /locus_tag="SB815_000333"
     CDS             19106..20335
                     /locus_tag="SB815_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG0906105.1"
                     /translation="MFIVAARYLFLCDEDFTILENQAFVFEDKILELGELDNLKKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSILNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLASTHFLESK
                     AENIWLRESKGGFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            20323..21219
                     /gene="sppA"
                     /locus_tag="SB815_000334"
     CDS             20323..21219
                     /gene="sppA"
                     /locus_tag="SB815_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEG0906106.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILIPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            21298..22329
                     /locus_tag="SB815_000335"
     CDS             21298..22329
                     /locus_tag="SB815_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HEG0906107.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(22571..22921)
                     /locus_tag="SB815_000336"
     CDS             complement(22571..22921)
                     /locus_tag="SB815_000336"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906108.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFGIHQKIQLKGVKFKCKKC
                     KEAIQFYKKYSENF"
     gene            complement(22897..23193)
                     /locus_tag="SB815_000337"
     CDS             complement(22897..23193)
                     /locus_tag="SB815_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEG0906109.1"
                     /translation="MLLDKLIPTWNEKYSIHDTMIDIQHQKLCELASKVESAVYKFVK
                     REELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNEHKIMHKISFVICLILYKT"
BASE COUNT         7461 a         3507 c         3616 g         8649 t
ORIGIN      
        1 caagtagttc aaaacaaaga gaataatgca aattttaata ataatactac taataaagaa
       61 acttttactc aagagcaaac aaaaacgcac agtgaaaatg tagataaaaa tagcttagat
      121 gagttaaatt ctttagttaa agatttaaat aaagtaacac aaaacaatgc tcgcaatatc
      181 actcctaaag aaactttgca gtatttttca caagatttaa aagaggctgt ggatcaatac
      241 aaagcgccta ttactaaact tagtatcact ctaaatccta ataatcttgg agaagtggag
      301 gtaactttga tacaaagagg taataacctt catatcaatt tcaactccaa tgccaatgca
      361 atgaatttgt ttatccaaaa tcaagccgag tttaaaaatt ctcttgtaaa tatgggattt
      421 actggacttg aaatgaattt tagtgatcaa ggcaaaagag agcaaaatca aaatcaagga
      481 aaaaatcgta gtggatatgg ttttaaagat gctttagatg gaaaaaatga aagtgaaaaa
      541 gtcaatctag agcttgtttt agcgaagtat ttttaaattg gaacacttat tgcttaaata
      601 ataaaaaact aaataaaaag gagtttataa tgatatcatc atcggattgg aatttaaatg
      661 ccactgctac aacttcaggt actacttctt caggaagtac tagtggaaca actagaacag
      721 attcaagcag tagctcagga atagtgagca atccaaatgc taccttagat aaggatgcgt
      781 ttttaaaact tcttttgata gagcttcaac atcaagatcc aacagatcct atggatagcg
      841 ataaaatgct tactcaaact tcgcagctta gcgcacttga aatgcagcaa aataccaata
      901 caactatgca aaaaatggtt gaaactatgc aaaagctttc tgattctttt agtacaagta
      961 tgagtacttc agctttaggg gctattggta aaatggcaac tgtttcagat aataaaatca
     1021 aacttacagg tgcagatgag cttatcgctc ttaaaatgta tttgcctgaa gattctgatg
     1081 aaaacggtgt tacgctagaa atttatgata gcaataataa acttgttttc agtgaaaaaa
     1141 gcgatgctaa atctatttct caaggtttat ttactatgga gtggccagga agaaataacg
     1201 atggggttta tgcaggtgat ggtgagtaca ctgttaaaat ggtttataat aataaaaatg
     1261 gtgaaaaaat cactgcaaat tacggaactt atcctatcga aggtgttgtt tttaaagatg
     1321 gtgttgccta tgcaaaaatg gctggacaag aagttccttt tgatgcaata caagaaataa
     1381 cagattataa gcttggttca tcttcatcta ctggaggaag cggttcaagt ggagactcaa
     1441 gtggtggttc aagcgatgga gattcttctg ggtctggatc tacagaagat ggcgacaaag
     1501 aggaaaaggc ataagccatg atgaattcat tttataatgg gatttctgga gtaaaaagca
     1561 atagctttgg tattgatatc actgctaata acatagcaaa tgtcaatacc acgggcttta
     1621 aatactctga tgctcaattt aaagatattt tttatactac cataacaacc caatcaacca
     1681 accctgctca aggtggttat ggtagcggtg cagcatcttc tcaagttgtt ttcgaacagg
     1741 gttctcctgt tgcaagtgat ggcgaatttg atgtggcttt gcaaggaaaa ggattttttg
     1801 gggttttagg ggctgatggc aatgcttact atactagaaa tggatcattt agaagagatg
     1861 ccaatggata tttggtagat tcttatggaa attttgtttt aggaacaatg aatcctgctt
     1921 ttactggtat taactatagc gatagagttg ctgggcttat gggggattat cttaacacag
     1981 gaactccggt aaataatggt tttactgtaa attcaaataa ttctttcagt ataggcacaa
     2041 ccgcttctca aggggctatt aaagtacctg tgaatatgta tttacctcct caagtaactc
     2101 aaaatgtaaa atggagtgga agtttaaata ctaacacaac aacagaagta gttaaagtag
     2161 atcttgatcc tagtaaattt aacattacaa aaactgaaga tggaaaatat gtagttagtg
     2221 gtagtgttag caaagaagat gtgtttagtg ctaaagcggg tgataggatt attttaaatt
     2281 tcactgatga taatggcgta aaaacaagct ttgaagcgac tttagatgaa aatctaaatt
     2341 ttaaaagtaa cgagcttgat ttaaaaggat tggatgaaaa tagcatcaag cttgatacag
     2401 ctcaaatttc aacagagcaa caaaaagcca ataaagatat tttagaatcc cctatttata
     2461 atgcagatgg aagtaaaagc actttaaggg ttacacttga aagagtttta ccgcaagaag
     2521 gcgataatat acaatataaa gctattgcac aaatttatga ttctaatggc aatgccgtag
     2581 gcaatccgac tgaaggaaat atggtttttg ataaaaatgg tgctttgctt caaaacaata
     2641 ttacaagcat tgcaaatcca aatggtggaa caattaatat tgatttaggt tctccttatg
     2701 atgctaacaa gcctggttcg ggttatagtg ggatttatat taaagaaggc gtcgaaaaaa
     2761 atgtagttac acaacaagat ggtgtagctg aagggttttt tgaacaatat aatatatccg
     2821 atgatggaag tattgttgcg caatttagca atggtaaaaa tgccatagtt ggaaagcttg
     2881 ctttatataa ttttatcaat gagcaaggat tagttgctat gggagataat atttttgcag
     2941 caacggcaaa tagcggtgat gcaagtttta ttatgaaaga tggtcaagtt gttaatacag
     3001 ctaaatttaa aggcggattc ttagaacaat caaatgttga tttaagcgca gagctttcaa
     3061 accttatcgt aactcaaaaa gcctttgatg caagctcaaa aagtatcact acaagtgatc
     3121 agatgataca aaaagccatt aatatgaaaa gataattctt aggaattatc tttttctaat
     3181 ttttcaaaaa taattttaat ttcttctatg tcgctttcgc tataattatg gcttgattta
     3241 atataactta cttgctgtcc tttttcaaga tataaaacct tttcatagtc ttttaaattt
     3301 atatgatgtt ttagttcaag gttggtgttt gtgttaggat aaaattttaa aaaattatcc
     3361 tctccgatat tttcggcttt tatgtatatt tttacattgt aaaccatttc atttaagaaa
     3421 tttaatttcg catcaatttg atattttaat tttataaatt ttttatacga aatgctaaga
     3481 tgattgtatt tttttatgat atcgtgataa agatttgaaa atttcatttc tatggcgtta
     3541 ggatttttag tcttttgaag tttgatgatt ttgatttgat ttttgattag ataatcatag
     3601 taattttgca ttttgcttat ggtgtcatca agcttacttt ttattttaag gcttagattt
     3661 ttaagatttt cgcattctgt atctgagttg ttttcaatag aaactagtgg tgaaactacg
     3721 atattgtttt taaattttat attgtttgtt atgattagat tttttcttgg atataaagta
     3781 ttatccgtta gtaaattgca aatataaata ttttctgctt ctatttttcc acccatgcag
     3841 ttttcaacaa atacattttt agctataatt gtcccatttt ctaaattttt tatatataca
     3901 gtgtcagctt gcaaagttcc tttgtgtgtt gtaataaaaa tatcttgtgc aaaaatttcg
     3961 ctttttgcat gagttaagcc tttgatactg atattttttc cataaagttt tgttgctcca
     4021 acattcccat ttacttttat atttgaagct tgaacattta caatacctga tttaatagca
     4081 tcatcactta tatcaaaatt agtgatttct aagtttatat tttcatcgat atttgttttg
     4141 attgaaccgg ttgttttaag ccctatttgt gataatttta aattatttgc gatacaatat
     4201 cctgtatgat ctttgtttaa aaatccataa ttggcgctaa aatatttaat tctatcttct
     4261 aattcttctg tgtaaatgct ttcatctttt atgataaaag gattatcaag aaaggctatt
     4321 ggatttaaat gaagtatctc tcctcttaaa tttcgtcctt cttttccaag aattctataa
     4381 atgtattcaa aaagtagctc atttttttca ataggtttac agtagtttcc ttcatcatag
     4441 ttaatatttt cgtcaaaaca ttcttcgtta acatctctat gataaataat ttcatcactt
     4501 ttatgttcaa tcttatctac acctttggca atttcaagct ctatttcttt aatagatgga
     4561 cttttttgta ttgataagat aaaatcatca atcttgtcaa ataaattttt atcaagtctt
     4621 aagattaaaa atttttgttt gatcattatt ttgtagatat tttgtaaaat atcaaatttt
     4681 aaattaggat aatatttaaa attttctgta aggttgatac tggcttttag atgggttagg
     4741 ttggagttgg atctaagttt gactgtaaaa ggaaaacttt gtttttttgg ataaatttct
     4801 ataagaaatt tttgcactat ggtattgtag ttttttacaa aaaaatcatc tgcataaaat
     4861 aagtcaaaat cctttctttc ataagttttt gttttcgctg gttttacact agaacacaga
     4921 agtttaaaat ctataactct aaaatcaaga atttgttctg tgtttgcttg ttcgtgattt
     4981 aaactttcga aaggattgaa agtttctaag gtttttactt gaaaattcat ctatcccccc
     5041 ccccatatca tttttttgag tcgtgaaatg gtgattttgt agtgcatctt caaaaatagc
     5101 attgaatttt tcgaaatttt gattcaaatc aaaataatcc aaatgaacta aaatttgccc
     5161 acatttttcg cactttaagg tattttcttt gctaacaagc tcttgatgta tagtctgtgg
     5221 aactgcatgg atacgcaaag aacaattgca aatataatca taggtttttt cagctcttag
     5281 gtcttgtttg attgatttta gttttatgta ttgttctaag gtataatgga tttcttgaag
     5341 gtgtagggtt ttttttgtaa aattagctat ccataaatct tcattagcaa aatgatctaa
     5401 aatccaatct ttggttaata tggaaagttc ttgagacatt tttacaatat tatctgaatg
     5461 ctctaaaagc tttttggttt tttctactaa tatttgatga gattttttat gttcttcaat
     5521 caaaggaaaa tcaatgcttt ccataaattt ttcttcatct ttaaaatgaa ttttgatgta
     5581 ttgaaatagc tttacaagaa tttgttttaa atcatttttg tgttgtgtat tattatcttg
     5641 aatgtttaga gctaaatcat ttgcaagatt ggtaatttca aaaattagtt cgtgttgttt
     5701 gtctaattgc atatttttaa tgctaaaatc tctactccat ttaacttcca tatttttcct
     5761 ttttggatgt aataattatt tttatatcgt attttttgaa aataaaataa taatttgaca
     5821 aatgaatttt taaaattctt ataaaaacaa tggattgatt gcaaatttat atattgaatc
     5881 ttaacaactc aaggcttttt aagtatatta tgatataatt tttaagcctt ttcttagacc
     5941 tgtgcaatgc tatttttaag caccgcttca gggtgggaac acagcagagc acttgatttt
     6001 agtgtgtgcc gcagttatct ggggaagggt tttattcatt ttaaaattcc catttttcaa
     6061 ttaggctagc ttttttataa attaaaaatt tatttaaaaa ttataatttt aagatttatt
     6121 aaaatattag ttaactagaa tttaagcatt gtaaattaca ttaccaatat caaaggataa
     6181 acaatggata gaaagaaaat tcccttgttg gtgctgtgta ttttaattgc agctgtgttt
     6241 tggcttgtac ctactcctgt aggtttggaa gataattctt ggcattttct tgggcttttt
     6301 attgctgtga ttatggcagt gattttacaa gtaatgcctt ttatagctat tgccatagta
     6361 gctcttagtg ggtattacca ctacccaatt gaaaatctaa gtaaaattta caccaaagct
     6421 acttcgaaaa cttctacgca acaacttatt gatgagacta aaatttcctt taaatacttc
     6481 agcacttgat tttttatatc aaaagagcat aagatgaaaa ggtaaatact gctatatcaa
     6541 atttaaaatc taaaacgggc ataaaagatg ctttaagtgg tttttcaaat tctcttattt
     6601 ggtttatagt gatttctatt attgttgctc gtggagttat taaaacagga cttggagagc
     6661 atttggctta tcattttatc agtattcttg gtaaaaaaac cttaggtatt gcttattcta
     6721 tagctttttg tgaaactatt ttagctccag ttactccttc aaatactgca agagcagggg
     6781 ctatcataaa tcctatagtt caagttattg caagaagttt taaatccact cctgaagatg
     6841 gaacacaaaa taaaataggc acttatcttt ctttggtaaa ttatcaagag ccaatcctat
     6901 ttcatcagct atgtttatta cagctacagc tccaaatcct ttggtggttg atcttatagc
     6961 acaagctaca aatttagaag tgtatttaac ttgggggtaa taggctttag ggatgttttt
     7021 acctggtata gctgctatgc ttttgatgcc tttgatgctt tattttctct ctccgctaga
     7081 aattaaatcc acgcctaatg cttctacttt tgctaaagat aaattaaaag aacttgtaaa
     7141 aatgaaaaat agtgaaaaaa tcatactcag tgtttttgtc tcgcttttac ttttatgggc
     7201 tggagctttg ggcttgtttt tttggaattt ctcttgatgc gactagtgtg gctttgcttg
     7261 ggttgtcttt ggtgttgatt agtggagttt taacttttgg ggaagttttg gctgaaaaag
     7321 ctgcttggaa tactttagta tggttttcag ctcttgtaat gatggcaact ttatttggca
     7381 aacttggcgt tacacagttt ttagctgaag cttaaggtga atttgcttct gctatgggac
     7441 ttggggaaat ttctattatg atatttttaa gccttgcttt ttttatatac acactatttc
     7501 tttgcttcca ttacagctca tatatcagca atgttttttg ttttttatag tgcagcttgc
     7561 cttaggagca ccaccacttt tttatgcttt tattatgata gcttcaggta atgttatgat
     7621 ggcattaact cactatgcaa taggaacagc tcctgttatt tttggaacag gctgtgtaac
     7681 tcttaaaaaa tggtggagta taggttttgt gatttccata gttgatatag tggtgatgat
     7741 agctgttggg cttttttggt ggaaaatttt aggattttat taataatttc taggaattaa
     7801 ttcctagaaa ttattctata aaaccacttg ctatgacttt atcatgatca taaaagactg
     7861 ccatttgtcc gctagcaagc ccataaacag gatcttttag gatgattttt gcacttttat
     7921 cttcataaat ttctaccttg caaggtgtgg attttgaacg atagcggatt tttacttcgc
     7981 aatcaagctc tttagcgtct ataaaaagat tgatattttt taggttaaat tcactgattt
     8041 taagttcttc tttggttcct acgatgattt ggttttgctt aggattgatt tttaaaacaa
     8101 aatgcggctc atgcgctcca cgcacttcaa agcctcttct tttgcctatg gtatagtgca
     8161 tatagccctc atgtttgcct actacttttc cgctactatc taatacttct ccaggaattt
     8221 ttgtatccat aaactgatct aaaacttgca cataagtatc ttcaacaaag caaatttcag
     8281 aactttcctt ttgggtggca aaagatttta aaacctctat agtggaagca aattttttca
     8341 catcttcttt tttcatttcg cctagcggaa aaataagata ttttaaagct tctttatctg
     8401 cactggccaa aaaatagctt tgatccttgc tttcatctac tgcggttttt attaagttgt
     8461 tttcaagtct tgcataatgc cctgtggcaa gtttttcaca acctaaactt ttagcaaatt
     8521 ctaaaagttt tccaagtttg ataaaacggt tacataaagc gcaaggattt ggtgttttac
     8581 cctctttata agtatccaca aaaggcatgt aaactttgtt tttaaaatct tcttgtaagt
     8641 ctaaaatatg ataaggaatt tgcaaaaagt ttgcaacttt ttctactttt ttgatatttt
     8701 cttcgtgata atttggtttg ccatgaagtt tcatataaca acctataact tcatgaccta
     8761 aatttttaag tttataagca gtgactgtac tatcaactcc accgctcata gcgactagaa
     8821 ttttcattaa atttccttta aagtattaat tataaaatcc aagtcgtcag tgattttata
     8881 ctttaactca tctcctttag aaatcacttc aagtttgagt aaagaatttc tgacgaactc
     8941 atcaaaacct cgccaaaatt cactcccaaa caaaataata ggaacatctt ttttaaattc
     9001 taattgtttt aatgtaagaa tttcacacaa ttcatcaagt gttccaaagc cgcctgggaa
     9061 gatcacaaaa gctagactct tttcaataag agccattttg cgtatggcta agctctcaaa
     9121 agtaatatta tattctacaa aatcattaag tttttgctcg tgaggtaaaa atatattaaa
     9181 ccctacagaa ctcattgaat ttgtattatt tttttgtgaa aaagcacctt cgttggctgc
     9241 acgcataata ccaccacctc caccacttat cacacaaaaa ccattttgag cacatttttg
     9301 tgccaaaatt ttagcctgct gataataaaa attatcttct ttaagtcttg ctgaaccaaa
     9361 aaaagttacg gcatttttta ggtttggtat gttagcaaat ttttctaaat cttggcttat
     9421 tttttcattc atttttcaac ctttagttaa aataaattcc attctagcta aaaatttata
     9481 ataagttctt tattatataa gttttaatag gtttatttta ttaagattag gaatttaaag
     9541 acttttaaat ccttaagctt taatatctat actttttggt gtagaattta aagaaaggat
     9601 tttattaaat tctcctgcat catcatcact aaatttcata ccaaaaagaa gttctaattc
     9661 tttactagtg ctaaatttac cttctaatag tttttttaca agttcgtttc ttgtgctatc
     9721 atctttgtaa gtttctttgt ttttactttc gccttgaatg gctttgaagg gtttttcact
     9781 ttgttgagtg ataatttcat catcactaga aagcaacatt ttatcaccca tagccatttc
     9841 gtattctttc acaaattcat cgtatctttg cttaaaatct atgtatttag ttttaaactc
     9901 atttaagctt aaatctttac ttataagtgc gtcaaattct ttataaaatt catcggcttt
     9961 tttgatgatg tcgtagccca aatgaaacat cttagaataa gaaacaaaaa aacctaacat
    10021 cattttctcc gtagttgggt cccattttgt ataagcagga ttaaaatctt ttaaagggga
    10081 tttttctatt ttattggggt cttttaaagc atttgacttc ataaagttgt taaattcttg
    10141 catatctttt ttgctaatac tttcatcaag tccgaatatt ttaggattat actcaaattt
    10201 ttttccacga taaggcaaag caccttctcc tgttataacg gctactccgt gtttgttgat
    10261 tttaaaatca atatttttat cttgtttaaa atttgaagtg ttataatcat agtttaaatt
    10321 tgagtttaga ctatttatca ttagtttttc ctctttactt gatagaatac ccaccaagat
    10381 atctttctaa aaagtcttta tagtttgaac tgatttcctt aactactctg taattattca
    10441 aagacaggac ttgattttac tctataccaa gaacctgatt gttcgttgat tacagccact
    10501 ccataagaaa aatacacaaa tcttttccct aaattagaaa taccaatatt tcttttcaca
    10561 gtatatccaa gaaagttacg ataagggtca tcgcccacta tactcatagt ttcccaaagt
    10621 cttttttgat tgatatagga atgcttacca ttaaccaaac aatttgtagt ttctataccg
    10681 cacattccac caaatcgaac aagtccttct ctattccaat aatattgatc tccgttacta
    10741 tcttgaaata aagttaattc caaattccaa tcaggtttgg caaaggctat aacttcatta
    10801 tcactaagtc gttttaaata ggttatatac ccacccttca cttctttcat ctcttcaagg
    10861 ctgagttctt tggcacccgg gcttgtatcg cttaaggcac cttttgtgag tttagctaaa
    10921 aaatcctcag caaaacagaa ctagtcagta aagaagttaa agctaataaa gcaaaaatct
    10981 ttttcattga aaatcctttc ataaattctt tttgtaagtt ctttaaaact actatcgact
    11041 tattctagca aaagtttaat cttgctttga aagttaagtg aattttcttt aaatacttaa
    11101 aattttattc tcggtttgtt tgcttttgta acaaattttc atttttatct taaattatat
    11161 taagcaagta aaaatattta aagattttaa aatattttat cttagaataa taaacttttc
    11221 aatatcaagg attaaatttt aaaattaact tgagctgatt atttaaaatg taaggattga
    11281 ctaatgaaaa aaattttctt aacatttatg gttttagtta attgtgtttt tgctagtgat
    11341 gagctaaata tagacagttt atttaaaaag caaataggct taagaagcat tacaagcttt
    11401 tctttactta gcacaggaaa tgcaaactcg tattctcttt atcctaatat aacaataggc
    11461 ggagatccta caatttggaa tgatacaaag caggtgtttt taactcaaac tttcatttat
    11521 accctaacac ctaagtttga catacttatt tcagggggcg gaagttatgc aagacaagaa
    11581 tatacaaatt ttttcacaaa tgcatattcc cataaagatc gcataggatt tgataatcta
    11641 tggctaggtt ttatttatac aggcgatagt attgcagatt taattccaca aattaccttt
    11701 caaactgcag ttgttcaaag agaaaaagca atcaatcaaa ccaaaaactt ttatctaaaa
    11761 tcacaaagct tacaagctag tttaagggga tatagcgatc ctgtagttta tagtatttat
    11821 acagggtttg gttataatca atcaagaaaa tttaaaaccc ttaaaataga gtatggaaat
    11881 agtatttatg tgggtgggga tttatctatt attctaagtc ctaaaattac tttagattta
    11941 ggagcagagc aaagatttca aatgaaacaa aaaatcaatg gctatcaaaa ttctgaagtg
    12001 cgttctattc caactttaag tttaggttct acttatagca ttaattcaga taccgcagtt
    12061 tctgttaatg ctagttttgg aggaagctct gcttctcctg atagcatatt tgggataagc
    12121 ttatggaaaa aattctaaaa attttattat ttttacccat tcttgctttg agtacaaaag
    12181 ccgaatgggt agttaagtct tatcaagaaa ttaaaaacga aagagtaata agacaaactt
    12241 atgagcaatc ttgtggtgct tcatctttag caactttact taatatactt gatgatcaaa
    12301 aaaagtttga tgaacttgaa cttttaaaga ttatgagcgg acaagaactt tatacggata
    12361 tggtaagctt tgcagattta aacgatgcag ttaaaaaact gggctttcaa agcaattcat
    12421 atcaaatcaa tagagaaaac ttggataaac ttgtaaatat tccaatgctt gtaaaaattg
    12481 aagatgatcc acgctttcca cattttgtta taattatcaa tcataaaggt aattatttac
    12541 aagtgcttga tccaagccat ggagaatata taagttctaa aagtcaattt tttagtattt
    12601 gggatagata taataaaggt ggttatgctt taattgttgc tcctaaaaaa gagctaaaac
    12661 cttttaagtt aaacactcca aaatctttac attttgattt cagccctttt agtttgtttt
    12721 agttttaatt cgtttatatt tattattctt aatttgtagg ctaaaacttt ttatcttagt
    12781 tgttctaatc tttctttttt agaaccaatt tctgtaattt gaacgccgaa gttaccatcg
    12841 acaattacta cctcgccata agcaattctt ttatccccaa ttaaaatttc aagcggatcg
    12901 tttgcaagtt gattaagctc cacaactgaa cctatatcca tagttaaaac atcttttaaa
    12961 agcatttttt tattgcctat acgcacacga acaggcaaac gcacatccat gataagattg
    13021 atatttttaa gctcttcgct aagcattatc gctttttctt cagtattgtg attagaatca
    13081 gtgcttgtat ttcctgtttc agcaggtttc ccgcttagga tgttatggag tgtttgatcc
    13141 atggctaaag aaacttgttc ttctaaatcg cctattttta catcatataa aaataatttt
    13201 ttaaaatctt taaaatctac gctttcaggc acaaattcac aagattctat gctaaaatcc
    13261 atttttggaa tgtctttttg ggctcctaag gttgtagaaa atgctgaaat gatattttgg
    13321 atggcttctt tagctgcatc catttcatca ggacctagtt tatcgttttt ggtgatctct
    13381 tcttcaccca tcatccattc accaatagca ctcattaaaa tagcaccagc taaaattcct
    13441 atttttccac catttgctat attaaatata gcatacacta aaggtgcttt taaagtatcg
    13501 cttgtattga catcaaattc tttatattcg ctaaattcag cactttttcc tgttaaacct
    13561 tcaatggtgc tgatgcattc atttgtaaac atttttaaaa aatcattgat catatttctt
    13621 catcctcctc ttcaggctca tcataaacac tagctttagc tttacgctct tcttcgtatt
    13681 tttccaaaat ttctttgatt tcatctttat ctgtgcgtat aagttctaaa attttaatag
    13741 attttctaaa acgatgcaat ccaatttgtg ctaagaaaac atctttttta tcgatgctta
    13801 ctatagcttt atcatctgct tctctatcaa gtcttaagat atcgccttgt ttaagttcta
    13861 aaaattcatg aacattaatt aaggtttttc ctaaaattgc ctcatatacc acttcagcac
    13921 gaccgattaa agttttaagt tctttgttgc gtgatttttt ggctgaggtt tcacccatca
    13981 taatatcacg gtttgctaaa cggcttaata tactttctaa atgtactaca ggatagcaga
    14041 tatttaccat tccgcttgaa tttcctatga tgatttccat tactaccatg ataacaatct
    14101 cattttgaga tacgatttgt acaacatttg gacttgattc tttagcttct atactaggat
    14161 aaatttcagt tacggtagcc cagctttctt taagtctttg cataatgata cgcaaaatag
    14221 aatcaagcaa attaagctca atatccgtaa gctcacgcga agcttcatag ctatcacctt
    14281 gtccgcccaa aagtctatct atcataggaa aagctatgct tggattgatt tctaaaacac
    14341 agtttccatc taaaggtttg atagaaaaaa cgttaaaact tgttgggctt ggcaaagaca
    14401 ttaaaaactc tccataagtc atctgatcga ctgaatgaag tttagtttca acaatacttc
    14461 tcatcatcga tgaaatttga gaggctaaat ttcttgctaa tttatcatgt atgcctttaa
    14521 tcgtcctaag ttgttctttt gaaactctgt ttggacgctt aaaatcatat acaacgatat
    14581 ttctttcatc tttttcatct tttgaatttg aggctatggg tgtgtcggtg ttatcatcga
    14641 caacttcaag tagagcatca atttcttctt gggagagtat ctcagccatt acactagcct
    14701 ttctctaagt tttttaagaa gttttttgtg aatttgtgaa attctgcttt cactgatttg
    14761 taaaatttca ctgatttctt ttaggcttaa ttcttcataa taataaagct gaataattaa
    14821 ctgatcgcgc tctttaagat catctagcac ttcgtgaatt ttttctaaaa gttcttcttt
    14881 ttcaattttt tctaaagtat tgtcttcatt ataaagttcg atttgctcat caatgggcag
    14941 ggtatagcta atagcatgag ctgttcttac ttctttgatt ttttctacat ctaaatcaag
    15001 ttttttggct agatactcat catcaggttc gcattcatgt tctaaaaaat attcatccat
    15061 gattgcatca atatctttaa taattttacg attatttcga ctcattacat caagacttct
    15121 aagataatca agcatagagc cgttaactct ttttcttgca aaaccccaga agttatcatt
    15181 ttgttcttta tcgtaacggc gtgaaagctt tatcatttct tcaacgccta tgctaataag
    15241 atcattaaca tctatacttg aaggcaagcg ttcttttagt ctaaaagcca tagcacgcag
    15301 agctggcatg taagaaagca caagctcatc ttgctctttc tttagcattt gtgcataagc
    15361 tttaggcggc tcttttagca tttcttcgtc tttctttgaa ttcatttttc tttagctctt
    15421 ctctttcttc attgagcttt tctaaaatta tatccatttt cttttcacga ataactaaat
    15481 cgttgataat attattgcta gttttttcat aatcgtgttt attaaagatt ctgccactaa
    15541 ttttctttac atctataaaa ttcataatag caatatgaac aaaaacataa aacataaaag
    15601 taataaaaca agtaaaaatc agtatatcaa aggcttcatc tatactaata atgctaaatg
    15661 caagtcctat aaaaaatcca caaacagtga aaaatgctac gtaattttct ggcctcataa
    15721 tctcttctct ttattgctaa aatctttcaa taatttttct aaaaaaactt gaaaaactac
    15781 gatttgaaac attatcaagc actttccgtt ccaatctata taaaagcttg gaagctaggg
    15841 ctttaatctc atcacttgag gctgtgtttt catcgctaaa taaagttctt tttttaatac
    15901 taccacttac atctttagaa gcgcttaaat gacctaagaa ttctaaattt aaaggatttt
    15961 taatgtttgc atctgcaact tttttaatat tttcaaaaac ttttaaagct tcattttcat
    16021 tttttacaac attaaagagc attagtaaat tttcttttgt cttagaagtt gtttttatgg
    16081 ttgcatacgc atcagtgatt gctgcaggat caggaacagt tactactata acttcatcag
    16141 ccatttctaa aaaatttaaa atatttccac caatacccgc gcctgtgtcg ataataagaa
    16201 aatcaagttc atctaaaata cttgcttgat ttaaaaatct ctcgtaaata tttttatcat
    16261 tatattttaa aatctcatct ccactttcgc ctgggatgag ccataaattt ggcttaactt
    16321 ctattaaaat gtcttccaag gagcattctc cgcgtaaaac atgcaagaga tttttttgta
    16381 tgcgtacatt taaaatgaca tccaaatttg ccaagccaat atcagcatca aaaagcccaa
    16441 ctttatagcc attatttgct aaaacattgg ctagattcgc gctaatcgta ctttttccaa
    16501 cgccaccttt tccacttgta atagctataa aatgagtgtt ttgggatttt ttggttccat
    16561 tttgactcat gagattgcga agtttatttg cttggttatt cattattttt tcctttgtta
    16621 aacccttcta aaatacaatg aactagaaaa tcactattgg ctacttctaa atcatctggc
    16681 acttcttgtc ctatagagaa aaagcttaga ggaatatttg tttcataaac aagagagaag
    16741 atatttccaa aaacctttgt ttcatcaaat ttagtaataa tcaaagtatc aatatttaag
    16801 aatgaaaaat ttttataaat ttccattaaa tcttcatgtt tggtgtttgc agaaaccact
    16861 aaatttacat caatttctgc atttgagtgc attaaaaatt ctttagtttt agcaagtttg
    16921 ctttgatcgt attgtgaatt tcctatagta tcaactaaaa ttacttcgca attatttaag
    16981 ctttttatcg cttcatctaa atcctttggt tctatgctat caataatagg aagtttcatc
    17041 atttttgcat actgaaaaag ttgctcaact gcaccgattc tataagtatc aagcgtaata
    17101 atacctgttt tataacgctt atctccataa gcatagcgaa aagctaactt agctaaggtt
    17161 gttgtttttc cgactcctgt tgggcctact agcatcatga ttttttgttt ttttatatcg
    17221 ctttcaacac gacaaggcaa gatatttctt aaaagtgagt gaaaatatct ttgaaccgca
    17281 tctttgttgg ttttcatagc agctggcata ttttctatag ttgctttcat aatcgcttct
    17341 agatgatttt caagcattcc actttctttg gcttgtttat aaatacttgc aaattcagga
    17401 ggtatcataa gattttttct agcttcagct ttatcgtccc acatcatatc tgcaagaaga
    17461 tctattttat cattaagctt gttgatttgt ttttcaaatt gcttttcaaa attttctatt
    17521 tttttattat aatttggatt aggggtgtaa ttttctaaag gtgtgtttgt gactttagaa
    17581 atttcattgc taacttcact tagtttttct ttgaaatcat caaagcctag agtcttattt
    17641 tgatgagggt tgattttgtt ttgtggaaaa tcttgatagg tttttttagc taagtcattg
    17701 ttttttacag tgtttaaatt tgtatttaag cgagtgtttg agaaatccaa gactacatct
    17761 tcatcttctt gagggatttg agatctaatt ttttcttctg caagagaggt agaggatggt
    17821 tttggcgagc ttttttttgc aggtaaagat tttccttgtt tttttaagtg ttcttcatag
    17881 tcgctttctt ctatggctac cataacctca taaagcgcac tgcgatttaa ggttttagga
    17941 cgaatttgtt tatttgttat aattaaagct ttatctccgt aatcttcttt tactttgggt
    18001 ataatttgtt ctgtatcttc aacggtaaaa gtatgtataa gttgtcccat ttatattcct
    18061 tatatcatgc ctaaaggcaa aattacactc actctttctt tagccccttt atgaggcacc
    18121 tcacaccact tatcacgctt gactttttgt gaaaagtata aaagatctaa atcaagcgtt
    18181 ctaggagcgt ttttgaaagt tctcttgcgt ttaaatttta cttcatagta aagtaaaact
    18241 ttcaaaagtg ctcgtgcatg caaattagtt tgtatcaaca taacagcatt ggtaaaatct
    18301 ttttgctctt taaaaccaaa ggcttcattt atcaacatag gagatgtgga taaaatttta
    18361 aatcttttat catccatcat tactcgaaaa agcatatcaa atcttttttt ttcgggttct
    18421 atattgcttc ctaagcctat aagagctaaa tatttaaaag atcgtatatt ttgactaaaa
    18481 aaaggaaaaa aacgactttt ttcaaagtgt tttactcctt gaatttttag cattattatt
    18541 tattcgtttg ttgtgcttgt tgcattgcgc gcaaattttt tatttgttcg caaatttgaa
    18601 ttatacccat taaagccaag tgatagccaa aaggaccaaa accaacaata gttccagaac
    18661 atacaggcgc tataagactt ttttgacgaa attcttctct gcgataaaca ttgctaatat
    18721 gtacttcaat tgtaggcaaa gctactgctg caatagcatc gcgaatagct actgaagtat
    18781 gagtatagcc tgctgcattg ataataattc catcaactgt tccaaggcat tcttgaattt
    18841 tatctacgat ttcaccttca aaattacttt ggaaaaagtc aagttctaca ttgttttgcg
    18901 atgctgcaag tttcatttgc tcatgaattt cttccatttt catagcacca taaattccca
    18961 cttctcttac gccaagcata ttaacatttg ggccttggat aatcattatt ttcatggatt
    19021 taaccttaaa aatttatttt taacctttta ttataacatt ttaaaaataa atttttgcta
    19081 caatgtaatt tttgaaagga aaatcgtgtt tatagttgct gcaagatatc tttttttatg
    19141 cgatgaagat tttacaatac tagaaaatca agcctttgtt tttgaagata aaattttaga
    19201 attgggtgaa ttggataatt taaaaaaaaa atatcctaag gctaaaatca tcaaaacacc
    19261 taaaaattcg gttattttac ctgcttttat aaatcctcac acacatttag aatttagtgc
    19321 aaattcaaca actttacatt ttggagaatt tttaatttgg cttaaaagtg ttataaattc
    19381 tcgttccata ttaaatgcac aggccaaaga agaattaata cttcaaagca ttaaaaaaat
    19441 gcaaaaaagt ggtataggca ctataggtga aatttcaagt tttgggagtg atttagatcc
    19501 ttgcttaaag gctagtcaca agggtatgcg tatagtattt tttaatgaaa ttttgggtac
    19561 aaatgaaaat caagttgaag ataaaaaaca agaattttta aaaagatttg aaaattcttt
    19621 gaaatttaaa aatgattttt ttatcccggc aatttcgatt cattctcctt attcaactca
    19681 tcctagtttg gctcattttg ctcttgattt agctaaaaag caaaatttac tagctagtac
    19741 gcatttttta gaaagtaagg ctgaaaatat ctggcttaga gagtctaaag ggggttttaa
    19801 aaaatggctt gaaaatttca cacttcatcc taagcctctt tatacaccaa aggattttgt
    19861 taaacttttt aaaggagtaa ggactctttt tacgcattgt gtttatctaa aagaatatga
    19921 atggttagat aaaaatttac attctattac acattgtgca ttttcaaatc gccttttaag
    19981 tcaaaaaagc ttagatttaa aaacggcttt aaaaagtgga ttaaatatcc atttaggaac
    20041 cgatggactt agctcaaata tttcattgtc tttacttgat gaaatgcgcg cgaatttgct
    20101 tatacataag aattttgatt tattagagtt agcctctaag cttttgcaaa tggtaacact
    20161 ttatcctgca agggctttaa atttaaattt aggagagctt aaaaaaggta aaattgctga
    20221 ttttaacgta tttgagctag gagaatgtga taaaaagcaa gctcctttgc agtttatttt
    20281 aaatgctaag gaagtggata aattatttat aaaaggaaaa gaatgcaaat tttaaaatca
    20341 ttttttaagg ctttaggatg cggtataaaa tttatcaata cttattttaa aacctttgtt
    20401 ttattgttga ttgttatatg gattttaata cctagtgcaa attcaagctc taatcttgca
    20461 aatttagaac gcattgattt aaagggtgaa atttttgaca gctctgcggt tttggaaaaa
    20521 attatcaatg ctaaaaatga tagcaatatc aaaggagtgc tttttgttat agactctcct
    20581 ggtggagctt ttgctcctag catggaacta gctctagcta taaaggattt aaaaattaaa
    20641 aagcctgtgc ttgtttatgc aagcggaact atggcaagtg gaagttattt agcaggagtt
    20701 ggagcaaata aaattttagc caatccggca agttttatag gctctatcgg tgtgattatg
    20761 caaggagctg atttaagcgg attggctaat aaactcggta ttaaagaaca aactattcaa
    20821 gcgggtgaat ttaaaagtgc tggaactttt gcaagagctt ggaatgagaa tgaaagaaat
    20881 tttttacagg gtttaattga tcaaagttat gatcttttta caggttttgt tgccaaggaa
    20941 agagcattag atcttaacaa aaaagatcaa tgggcaaatg caagagtgtt tttagctgcc
    21001 aaggctaagg agcttggtct tatagatgag cttagtaatt atgaaaatgc taaaaaggag
    21061 cttgaaaaac ttgctaatgt ttcaaatcct gtttggaaag aagaagataa gattgataaa
    21121 tttcttaacc gcctagaagg acaaacatca agcttgataa gtaaaagctt aatcgaaatc
    21181 gcttataaaa ctaatagcag ttttataaac gctagataaa atatataaat atttttattt
    21241 aatttttgta atatttttat gcaataatta tttatatctt agataaggag taaaataatg
    21301 aaaaaaaata ttgttttttt cgaagttaaa ggtgggagtg ataaaggtga agatggctat
    21361 agaaaagata ccatgcctat ggtaaatgcc ttaaaagcta agggttggaa tgctgaggtg
    21421 attttttttg aagtgggtaa aaaagatgaa atttacaaat atgtgaaaga aaattttgat
    21481 ggttatgttt ctcgcatcaa tcctggcaat cttaaagaag aaaatgagta ttttgatatg
    21541 ttaagaaaac tttgtgccga taagcttgta ggtatgcctc atcctgatgc tatgataggt
    21601 tatggtgcta aagatgcact tacaaaatta gcagatactg atcttgttcc aagcgatact
    21661 tatgcttact atgatattaa gacttttaaa gaaaattttc caaaaagttt ggctaaaggt
    21721 gaaagggttt taaaacaaaa tcgtggctct acaggagagg gaatttggcg tgtgagtgta
    21781 gagggtaatg ttagtggaga tagtttgcct ttaaacacaa aaatcaaatg tacagaagct
    21841 aaggataatc atgtagaaca tagagagctt ggggaattta tggatttttg cgagcaatat
    21901 atcataggtg ataatggtat gcttgtggat atgacttttt taccgcgcat taaagaaggt
    21961 gaaatcagac ttttaatgct ttataacacc cctgtaaatg tagtgcataa aaaaccagcc
    22021 gaagatgctg atgctttttc tgctacgctt tttagtgggg caaaatatcg ctatgataag
    22081 ccagaagatt ggaaaacttt ggtggatatg tttttaggcg agcttcctaa ggtaagggaa
    22141 aaattaggca attacgactt accattgatt tggacggctg attttatttt agatactgat
    22201 gaaaagggca atgataaata tgttttaggc gagattaatt gttcttgtgt aggttttact
    22261 tctcatttag aacttgctga tgaagtagct tcaaatatta ttaatattgt aagtaaaact
    22321 aaggcttagt ctttaagctt aatgtccatt ttattattgt aaaatggaca ttctttttct
    22381 attgttttta agtttgagct atattctatc gagaaaaaat tttcacaaaa tgagcatttt
    22441 gtatctttgg ttagtatagg ataggaatag tcaaatttat ccaaaataaa atattttatt
    22501 tttttatcct taaatttcct tctttgtcta acttatactt tatttattat tttaacgcat
    22561 aaatagttaa ttagaaattt tctgaatatt ttttataaaa ctgtatggct tctttgcatt
    22621 ttttacattt aaattttacg cccttaagtt gaattttttg atgaattcca aatggtacat
    22681 catgcatttg ttctacgcat tcgcatgtat aaagataaac tgtattttca tcatcttttt
    22741 cttctttgac ttcttcaaag cttacttccc catcatcttc agaagttaaa gaagatcttc
    22801 tgtattgttc aactttcaca tctttataga gtatatgttc taaaagccat tttttagaaa
    22861 ctgtgtaaag cttctctttt aaatcattag tggtttttat gttttgtata agataagaca
    22921 tatcacgaat gatattttat gcatgatttt gtgttcattt aaataaggat aatgaatttc
    22981 ttgcatataa tcttcttcat tactaaaatg ttctttcata tagttaaaaa gttctgttaa
    23041 aatttctttg agttcttctc gttttacaaa tttataaaca gcactttcaa ccttgcttgc
    23101 aagttcacaa agtttttggt gttgaatgtc aatcattgtg tcatgaatac tgtatttttc
    23161 attccaagtt ggaattagtt tatctaaaag caccttcttt aatttttata tttaaaatta
    23221 atttaatata ttt
//
LOCUS       DARBAR010000012        22209 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.012, whole genome shotgun sequence.
ACCESSION   DARBAR010000012 DARBAR010000000
VERSION     DARBAR010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22209)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22209)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22209
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.012"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            201..2009
                     /locus_tag="SB815_000338"
     CDS             201..2009
                     /locus_tag="SB815_000338"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEG0906110.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKSEALAKFQNDDLKQEVLLRIPDRAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            2006..2524
                     /locus_tag="SB815_000339"
     CDS             2006..2524
                     /locus_tag="SB815_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEG0906111.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            2563..3654
                     /locus_tag="SB815_000340"
     CDS             2563..3654
                     /locus_tag="SB815_000340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEG0906112.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDANMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            3696..7158
                     /locus_tag="SB815_000341"
                     /pseudo
     CDS             3696..7158
                     /locus_tag="SB815_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            7239..8267
                     /locus_tag="SB815_000342"
     CDS             7239..8267
                     /locus_tag="SB815_000342"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEG0906113.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHKFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFSSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKEKITLQFTPHLVPMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            8277..8723
                     /locus_tag="SB815_000343"
     CDS             8277..8723
                     /locus_tag="SB815_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG0906114.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVIDEEIVGSILCGHDGRTGGFYHVCVHKDHRKKGIAHEMAKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            8727..9572
                     /gene="argB"
                     /locus_tag="SB815_000344"
     CDS             8727..9572
                     /gene="argB"
                     /locus_tag="SB815_000344"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEG0906115.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATIEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDENFNTYNINADDAACAIAKALRAEKLAFLTDTAGLYEDFNDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            9576..10763
                     /locus_tag="SB815_000345"
     CDS             9576..10763
                     /locus_tag="SB815_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEG0906116.1"
                     /translation="MKMDYKEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGF
                     MQGLSLDKSVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(10782..11411)
                     /locus_tag="SB815_000346"
     CDS             complement(10782..11411)
                     /locus_tag="SB815_000346"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEG0906117.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            11500..12048
                     /locus_tag="SB815_000347"
     CDS             11500..12048
                     /locus_tag="SB815_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEG0906118.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDNALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEV
                     SFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(12017..13390)
                     /locus_tag="SB815_000348"
     CDS             complement(12017..13390)
                     /locus_tag="SB815_000348"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEG0906119.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLELSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLELVYKEKRLLKKSSLNTIQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(13377..14399)
                     /locus_tag="SB815_000349"
     CDS             complement(13377..14399)
                     /locus_tag="SB815_000349"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEG0906120.1"
                     /translation="MQRKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(14413..14823)
                     /locus_tag="SB815_000350"
     CDS             complement(14413..14823)
                     /locus_tag="SB815_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG0906121.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKA"
     gene            complement(14824..15432)
                     /gene="pyrE"
                     /locus_tag="SB815_000351"
     CDS             complement(14824..15432)
                     /gene="pyrE"
                     /locus_tag="SB815_000351"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEG0906122.1"
                     /translation="MNLEQIYKDCGAYLEGHFLLSSGKHSQFYLQSAKVLEDPKLAAK
                     LCDELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGNKAIKPGSRGN"
     gene            complement(15435..15998)
                     /gene="frr"
                     /locus_tag="SB815_000352"
     CDS             complement(15435..15998)
                     /gene="frr"
                     /locus_tag="SB815_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEG0906123.1"
                     /translation="MIMLNEIFNKQKTQSEKSLEALKKDFTTLRTGKVNIHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDTYTTKIDEGVKSKESELLKV"
     gene            complement(16008..16379)
                     /gene="secG"
                     /locus_tag="SB815_000353"
     CDS             complement(16008..16379)
                     /gene="secG"
                     /locus_tag="SB815_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEG0906124.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPTT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            complement(16483..17178)
                     /locus_tag="SB815_000354"
     CDS             complement(16483..17178)
                     /locus_tag="SB815_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEG0906125.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            17338..17973
                     /locus_tag="SB815_000355"
     CDS             17338..17973
                     /locus_tag="SB815_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEG0906126.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRVGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            17970..19853
                     /locus_tag="SB815_000356"
     CDS             17970..19853
                     /locus_tag="SB815_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEG0906127.1"
                     /translation="MKKIIFSLCFFILHLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNPEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     LFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(19876..20847)
                     /locus_tag="SB815_000357"
     CDS             complement(19876..20847)
                     /locus_tag="SB815_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HEG0906128.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(20857..22038)
                     /locus_tag="SB815_000358"
     CDS             complement(20857..22038)
                     /locus_tag="SB815_000358"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HEG0906129.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIVVTSCATESINWVLKGVYFDHILDKERNEVIISSVEH
                     PAVTAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
BASE COUNT         7735 a         3062 c         3839 g         7573 t
ORIGIN      
        1 tttaggattt gttttctttt atttgtatta tagtgggatt ttaaatgctg gaagtgaatt
       61 taagctataa ataaatatta aatttattct aagatttttt taaaaataag ctgaatttca
      121 aaaataatta agtcttagaa agttaaaatt agaactttat aaacactcac agggtaagtg
      181 agcgacaaag ggttaaaaat atggaaaaag aagttattgc gtatttggac aatgagacaa
      241 taattgactc tcaaagtgtg aaaaatacaa atttaaaaga aatttatttt gataattcta
      301 aagaaagttt agaagtaatc cgtcattctt gtgcgcattt aatggcacag gcgattaaga
      361 gtttgtatcc tgaagctaaa tttttcgttg gtcctgttat agaagatgga ttttattatg
      421 attttcgtgt ggaaagtaag attggcgaag aagatttggt aaaaattgaa aaaaagatga
      481 aagaacttgc tgaagcaaag attgaaattt caaaatatga aatcacaaaa agcgaagctt
      541 tggctaaatt tcaaaatgat gatttaaaac aagaagtttt attgcgtatt cctgatagag
      601 ctgtaagtat ttataaacaa ggtgaatttg aagatttgtg tcgtggtcct catgtgccaa
      661 atacgaaatt tttacgcttt tttaaactca ctcgtgttgc aggagcgtat ttgggtggcg
      721 atgaaaaaag agaaatgctt actcgaattt atggaactgc ttttgcagat aaggaaagtt
      781 taaaagagta tttaaccatt attgaagaag ctaaaaaacg cgatcataga aagcttggaa
      841 cagagcttaa gctttttact tttgatgatg agatcggagg aggtcttcct atttggttga
      901 gtaatggtgc aagacttaga tctaaacttg aacatatgct ttataagatc catcgtttac
      961 gtggttatga gcctgtgcgt gggcctgaac ttttaaaagc agatgcatgg aaaatcagtg
     1021 ggcattatgc aaactataaa gaaaatatgt attttacaca aattgatgaa caagaatatg
     1081 gcattaagcc tatgaactgt gtgggacata ttaaaattta tcaaagtgat gtaagaagtt
     1141 atcgtgattt gcctttgaaa ttttttgaat acggcgtggt acatcgtcat gaaaaaagtg
     1201 gcgttttgca tggacttttt agagtgagag aattcactca agatgatgca catatttttt
     1261 gtatgccaag tcagattaaa gagcaggttt tagaaatttt agcttttgtg gataatttga
     1321 tgaaattatt tgattttagc tatgaaatgg aaatttcaac taaacctgaa aaagccatag
     1381 gtgatgatga aatttgggaa atagcgacta aggctttaaa agaagcttta gatgaacaag
     1441 gtttaaaata cggtattgat gaaggtggcg gggcttttta tgggccaaag attgatatta
     1501 aaatcaccga tgctttaaaa agaaagtggc aatgcggaac catacaagta gattttaacc
     1561 tgccaagtcg ttttaaactt gaatacactg atagtgataa tgaaaaaaaa caacctgtaa
     1621 tgttgcatcg tgcgatttta ggttcttttg aaagatttat aggaatttta accgagcatt
     1681 gtgcgggtga gtttccattt tttatcgcac caactgcggt gggtatagtg ccaataggcg
     1741 aagcacatat tgcttacgca aaagaaattc aaaaagaatt attagagctt aatatcgata
     1801 gcgaggtgta tgaaaaaaat gagagcttaa gtaaaaaaat tcgtatcgct gaaaagcaaa
     1861 aattacctat gattttagtt ttaggcgatg atgaggtggc aaagcgtagc gttgctttaa
     1921 gagatagaag agctaaagaa caaaaaaatc ttagcttgga cgaatttatt aaattagtta
     1981 aggagaaaat gagtgaggta cacttttgag taaagaaaaa gaagtattgc tcaatgaaga
     2041 aataagagcg gatgaaatca gatgtgttgg cgatgatggc aaagtttatg gtattatcag
     2101 tagtgatgaa gctttagaaa ttgcaaatcg tttaggactt gatcttgtaa tgatagctgc
     2161 agatgctaag ccacctgttt gcaagatcat ggactatggt aaattccgtt atcaacaaga
     2221 gaaaaaacaa aaagaagcaa agaaaaaaca aaaagtgatt gatataaaag aaatcaaact
     2281 ttctgtaaaa attgctcaaa atgatattaa ttacaaggta aaacatgctt tagaattttt
     2341 agaacaaggt aagcatgtga gatttcgtgt gttcttaaaa ggacgtgaaa tggcaactcc
     2401 tgaagcaggt gtagctttgc ttgaaaaaat ttggactatg atagaaaatg aagctaatcg
     2461 tgacaaagag ccaaattttg aaggtcgtta tgtaaatatg cttgtaactc caaaaaaagc
     2521 ttaatccact tttgtggata aagcttttaa aggttttaaa ttttgaaaga aaatccttct
     2581 tttttaaaag agcaaattat aacttatctt ggaaataaaa gagcactttt aagtttttta
     2641 aataatggct ttaaggtagc taaaaaagaa cttggtaaag ataaatttag tttttgtgat
     2701 atatttagtg gctcaggtgt tgtaagtcgt tttgcaaaag cacactcaaa ttatatttta
     2761 gccaatgatt tagaagatta ttcaaaactc atcaatgagt gttatcttgc taataaagac
     2821 aaagatttac ttcaaaatat aaaaaagtat tataaaaatt taatccaaaa tttagatttt
     2881 caaaaaggtt ttatcagtga gctttatgct ccaaaagatg atgatgatat taaaaaaaat
     2941 gaaagggttt tttatacttt taaaaatgct ttatatcttg atactataag gcaaaaaatc
     3001 gaaaatgaaa ttccaaaaga attgaggcat ttctttatag ctcctttgat ttatgaagcc
     3061 agtgttcatt caaatactag cggagttttt aaaggttttt ataagggtaa ggatggcatc
     3121 ggaaaatttg gtggcgaagg acaaaatgca cttaaacgca ttaaaggaga aatagagctt
     3181 aaaatgccta ttttttcaaa tttttcttgt gaatttgaag tgatgcaaaa ggatgcaaac
     3241 atgcttgcaa aagaacttga tttttttgat gtagtgtatc ttgacccccc ttataatcag
     3301 cacccttata gttctaatta ttttatgcta aatttaattg caaattataa aaaacctgaa
     3361 gaaatttcta aaatcagtgg cattccaaag gattggaacc gcagtacttt taataagtca
     3421 aaatttgccc aagatgcttt atttgaactt attaatgatt taaaagcaag agtgatttta
     3481 ctttcttata attgtgaagg ttttgtaaaa aaagaaattt ttttaaagcg cttaagcact
     3541 cttggaaaat gccggatttt agagcaaaaa tataatactt ttagagcttc tcgcaatctt
     3601 aaaaatcgca atatccatct tcatgagcaa ctttatattt tagttaaaaa ttagtttttc
     3661 gtgctaaaat tgcacttaaa aatgaggagg gatttatgaa actaaaatta tctttttgta
     3721 cattaatggc atttggtttt tctaactatc tttttgcttc agctattgat ccaaagttat
     3781 tttcaagaat atcttgattt tgccagtaat aaaggcaaat ttcaagtagg tcaaattggc
     3841 ttttaaattt tagcaaaaaa tcctagtcaa aatatctctt ttaatgtgcc tatgattgat
     3901 ttttctactt caaatcgtgg aggaaaattc caaggagaat ttaccaatat aggacaatct
     3961 tatatagtca gcgcttctca tatgagtaca agtttaaata ctgggaagta aataaagact
     4021 atgtgaaaca aggtagtgtt ttacactttg gaggggtagc aaatagaatc gtaagctcaa
     4081 gtgataattt tacttataaa aaagaaaatg tggattttgc tgttttaaaa atgagtaaga
     4141 ttagtctcaa taaaagtgca aatttgagta aagatttaaa tcttattgaa aaaattctgg
     4201 cgatggtgga gatatttatg aatacaagga tccattttgg gatagttgtc aaagtggaaa
     4261 atgtgattat tcaaaaggta aaggcaagct ttttgatagt tcgggttatg agtactttgc
     4321 aagagaggga agtggtattg tagctttagg ttttgaagat acaaataaag tacccattaa
     4381 gatttttgat tctaatgaaa tcaatttagg aggttttgtc ggtttaactc ctaaaaatac
     4441 tgaagataag cgttttaagt tgcaatttct taattatacc aatgataaaa gaaatccttt
     4501 tacaagttct tcaatatccg gggattctgg aagtagagtt tatgtttatg ataagatgga
     4561 taaaaaatgg tatttagtag gtgtagtaag tacgagtaat tgtaatgtcc attttactat
     4621 ggatatactt gtttgcaggt tgattatgct ttgatcaatc aagcaaagat caatgaattt
     4681 taaaatgctc ataaagtagt cataggatct ggaacttata cacttagtag cgatggtttg
     4741 atgaaagatg gtaaaaaaat agaaaatgta agtttgattt ctaagactaa tgtgggttat
     4801 gtaagctata aaaattcttt tgatgataaa ataattgtga taagagaatt gaagaaatgc
     4861 aaaatagcaa ggatttgtat ttttctcaaa atggaagtat aaatttaaat agcgatgtgg
     4921 atttaggcgc tagtgtttta aatttgataa aaattcaaat tggcaaataa caggcgataa
     4981 atggcttata catggcggaa tttatgctga taagggttca aggtagaata taatgttaaa
     5041 accaaaaaag atgattttct ttaataaaat gggtgaagga gagcttgttg tcaaaagtca
     5101 aagtgtggat acaggactta gaatgggtga ggaccaaggt aagtcttgag ggtgaaggtt
     5161 taagttttag cgaaatttat atgaatggca gaactttgga tttatcaggc ttaacattaa
     5221 attttgatca aattaaaact gactctaata atgtttttat cacaagttct taatcaggaa
     5281 tacatttaaa tttagaaaac aagcaagatt atctttatca tggcaatatc ttttcagatg
     5341 aagctgtaac aatgagtgcc aatacagaca aagctttgat ttttgatggt aatatttaca
     5401 ataaagaagg tgtttttagg acagaaaatg ccaagttaaa ttttcaagga catgctagaa
     5461 tacacgctta tgtaagcaaa gaacaagcta aaaaacttca agaacatggt ttaagtgctt
     5521 taactaagcc tgtaagtttt acacaagaag attgggaaga tagggttttt gttttaaaag
     5581 agcttaattt agaaaaaaag cgagttttat ttagggcgta atgtaagctt aaaagtagaa
     5641 aaccttaatg ctaaaaattc caaaatagag cttggaagta aaaatttgtg gatcgatgaa
     5701 aaagatgggg aaaatattat tgataagact gatgattatt cttatggaga tgttgtataa
     5761 acaggagttg gcaaagaaat ggcttttgag caaaagcttt aaaataccca aaatgctaag
     5821 atagaaaagg tttattttag tgtaaattta aatcttgatc attctgatgt tactttgcaa
     5881 aacacatttt ttagtggtaa tatcaaaggt atcaatgata cgcaaaaaaa atcttgcgat
     5941 taaagattct ttgcttgagt ctcatatata aatgagcaat cttcaagtag aaaaaagtgc
     6001 tatttatagg aaagttgatg caaaaaaatt aagtgcaaat aatacaatat ttaaaatcaa
     6061 tgcggatttt gaaaattcta aatcagatta tattaattct aaggaaagca cacaaggagt
     6121 aaataatact ttagtattaa tttttcttaa taatcctagt aaaaagcggg tttaaatatc
     6181 ttactagctc atttaaaaga tgaaaataaa catttaacaa aggaattttt tactatgcca
     6241 aatgtgagca aggttttagt acgtataccc caaatgttgt tttttctcat aatgaggaaa
     6301 attttgccca gagtggaatt tagaaaaaat tgattctaag attaaagatg aatatttttt
     6361 tactaatgat aatactcaag ctattgtaaa aactaaatct atacttgctc aagctatttt
     6421 aggctccatg ataggagtgg aataatatgc ataaaagaat gggggaatta cgcaataatc
     6481 cttatgaaag tggtgtatgg ttaagaactt ttggatgggg tacgagtgat gagtataata
     6541 gtggaaaata ctttgaaatt caaagcggac atgataaatt aaacgagtat tcgaatttcg
     6601 agctttacag tggagtaagg tttttatagt gattttgttt tagatatatt tattatcaaa
     6661 atgaaataaa tgcaaatttt attccaggaa atcaaggtag attagatgat aatgatggtt
     6721 cgcataatat tatcttaagt gctgagttag gttatagaaa agcttatgat aaattttatc
     6781 ttgagccgat ttggaattta tcagtggtta tgtaggagct atggatctaa aaggagatat
     6841 tgctagttta aaacgatttt cttatattcc tttagtcgta aaaacagcat ttttcatagg
     6901 aagtcaaaat taaaatttaa attttagaac aggacttggt ttgtatgcgg atccgattaa
     6961 agcaggagat caaattttag aggatcaagc aagtcagaga agatatgaag gaaaaaagat
     7021 caaagaatgt ttataaattt aggaaatgat tataagctta acgataaaac acgctttaat
     7081 tttgaatttg aaaagacatt ttttggcgat ttaaatgtag attggagtgc aaatgctaat
     7141 ttaagatata gtttttaaat aaaaaataat ttaaaaattg tatttttatt ttaagctttt
     7201 ttgtttataa tacttgcttt tacatttaaa gggtaaagat gaaaataaaa gttgggattt
     7261 taggagcgag tggttatgcg ggaaatgaac ttgttcgcat tttgcttaat catcccaagg
     7321 ttgaaatttc ttatttgggt tcgagttcta gcgtggggca aaattatcaa gatctttatc
     7381 ctaacacccc tttaaattta tgttttgaaa ataaaaattt agatgaactt gaacttgatc
     7441 ttttgttttt ggctactccg cataaattta gtgctaaact tttaaatgag aatttattaa
     7501 aaaagatgaa aatcattgat ttaagtgcgg attttcgtct taaaaatcct aaagattatg
     7561 agctttggta taaattcact catcctaatc aagagctttt gcaaaatgcg gtttatggac
     7621 tttgtgagct ttataaagaa gagataaaaa aagcaagttt agtggcaaat ccaggttgtt
     7681 ataccacttg ttctatctta agtctttatc cgctttttaa agaaaagatc attgatttta
     7741 gctcagttat tattgatgca aaaagtggag taagtggagc aggaagaagt gcaaaggtgg
     7801 aaaatctttt ttgtgaagtt aatgaaaata tcaaagctta taatttagct ttgcatcgcc
     7861 atactcctga aattgaagag catttaagct atgcggccaa agagaaaatc actctacaat
     7921 ttacccctca tcttgtgcct atgcaaagag gaattttaat cagtgcttat gcaaatttaa
     7981 aagaggactt gcaagaacaa gatatacgcg atatttatac aaaatactat caaaacaata
     8041 aattcataag gcttttaccg ccgcagtcgc ttccgcagac tcggtgggtt aaatcaagca
     8101 attttgcgga tataaatttt agtgtagatc aacgcacaaa gcgtgttatt gtgcttggtg
     8161 ctattgataa tttaatcaaa ggtgcagcag gacaagctgt tcaaaatatg aatttaatgt
     8221 ttgattttga tgaagatgaa ggacttaaat tctttgcaaa tttgtaaagg ataaaaatgt
     8281 taatacgagc tatgcaaaaa agcgattatg aagccgttta taagctttgg tgtgagataa
     8341 aaggctttgg gataagaagc attgatgata gcaaagaaaa tatagaaaat tttttagata
     8401 gaaacccaaa tcttagcgtt gtagcagtga ttgatgaaga aattgtagga agtatacttt
     8461 gcgggcatga tggacgcaca ggaggatttt atcatgtatg tgtacataaa gatcatagaa
     8521 aaaagggcat agcgcacgag atggcaaaat tttgtcttga ggctttaaaa gctcaaaaga
     8581 ttaataaaat cgccttaatc gcttttaaaa acaatgattt aggcaatgag ttttggaaac
     8641 attatggttt tactttaaga gaggatgcga attattacga tctttcttta aatgagtata
     8701 atcaaactag ctttaatgct taaggaatga tcatgcaaaa atatttagaa aaagctaatg
     8761 tcttaatcga agctttgcct tatatacgca aatttaattc taagattata cttataaaat
     8821 acggcggatc agctatggaa aatgaagagc taaagcattg tgtgatgcaa gatatagctc
     8881 ttttaaaact cgtgggttta aagcctatta ttgtacatgg tgggggaaaa gatatttctg
     8941 ctatgtgtga aaaattaggc gtaaagagtg agtttaaaaa cggtcttagg gttagtgata
     9001 aagccactat tgaagtagcc agcatggttt taaatcatat caataaaaat ttagtccata
     9061 gtttgcaaaa tttaggagtt aaagccatag ggctttgtgg taaagatggc gcgcttttag
     9121 aatgtgtgaa aaaagatgaa aatttagctt ttgttggcac gatacaaaag gtaaattcga
     9181 aaattttaga agagcttttg gaaaaagatt ttttacctat cattgctcct attggcatgg
     9241 atgagaattt taatacttat aatatcaacg ctgatgacgc agcttgtgcg atcgctaagg
     9301 ctttaagggc tgaaaaactt gcttttttaa ctgatactgc agggctttat gaggatttta
     9361 atgataaaaa ttctttaatt tctaaaatca gccttgaaca ggctaaaatt ttagctccta
     9421 aaatagaagg tggtatgcat gtaaaattaa aatcttgcat tgatgcttgt gaaaatggag
     9481 tcaaaaaggt acatatttta gatgggcgtg tgaaacattc tttgttgctt gagtttttta
     9541 ccgatgaagg tataggcact ttggtgggtt aaaggatgaa aatggattat aaagaacaaa
     9601 gtcatattat ccctacctat aagcgttttg atatagtttt agaaaaaggg cagggggttt
     9661 atctttttga cgataaggct aaaaaatatc ttgatttttc aagtggcata ggtgtttgtg
     9721 ctttaggata taatcatgct aaatttaatg ctaaaatcaa agcgcaagtg gataagcttt
     9781 tgcatactag caatttatat tataatgaaa atatagctgc tgcagctaaa aatttagcca
     9841 aagctagtgc tttagagcgt gtttttttta caaattctgg tacagaaagt atagaaggag
     9901 cgatgaaaac agctagaaaa tacgccttta acaaaggtgt taagggtgga caatttatcg
     9961 cttttaagca ttcttttcat gggcgtactt taggggcttt atcgcttact gctaatgaaa
    10021 aatatcaaaa gccttttaaa cctttaattt caggggttaa atttgcaaaa tataatgata
    10081 tttcaagcgt tgaaaaactg gtgaatgaaa aaacttgtgc cattatctta gaaagcgtgc
    10141 aaggagaagg tggaataaat cctgcaaata aagattttta caaagcctta agaaagcttt
    10201 gcgatgaaaa agatatatta ttaatcgctg atgaaattca atgtggcatg ggtagaagtg
    10261 gaaaattttt tgcctatgag cacgcacaaa ttttgcctga tatcatgact tcagctaagg
    10321 ccttaggttg tgggcttagt gtgggtgctt ttgtaataaa tcaaaaggta gcaagcaatt
    10381 ctttagaagc aggcgatcat ggtagtactt atggtggaaa tcctttagtt tgtgcaggag
    10441 tgaatgcggt ttttgaaatt tttaaagaag aaaaaatttt agaaaatgtc aataaactca
    10501 cgccttattt agagcaaagt ttagatgagt tgataaatga atttgatttt tgtaaaaaac
    10561 gcaaaggctt agggtttatg caagggctga gtcttgataa aagtgtaaaa gtagctaagg
    10621 tcattcaaaa atgtcaagaa aatgcacttt tattaataag ttgcggggag aatgatttga
    10681 gatttttacc tcctttgatt ttacaaaaag aacatattga tgaaatgagt gaaaagttaa
    10741 gaaaggctct aaagagtttt taataaattt tgtaaaaaaa tttattcttt tccatctact
    10801 ataggcacaa ataaacattc ttctaaaatt tctttttgta aatttgtgcc attttttcta
    10861 aggcgtgtga tgaattgttt gccattgtgt aaaataggag cgactaaaat accgtcatcg
    10921 cttaattgat caagtaaaat ttcaggaatt tgtgtcgcat aagcagaaaa taaaatccta
    10981 tcataaggag cataattttt ccagccattt tgtccatcat caaattttac attgatatta
    11041 aaaagttcta attctctgaa agtttgagcg gcttttttgg ctaaattttc tatgcgttct
    11101 atggtaaaaa cacgccttat gactttgctt aaaatcgcag cttgatagcc acttccacaa
    11161 cctatctcta aaatactatc agcattttta aaatctaaag ccatagtcat tttagctaca
    11221 gttaaaggtg aactaatcca ttgagaattt gctaaaggca aagcatcaag gcgataagca
    11281 tgggctttta aaggagaaaa aatttcacgt ggaatttgac aaaaagcatt aaaaagttct
    11341 tcattgataa aaactttttg tgcaatttct tcagccatat tttgacatct tttttgttca
    11401 aatgcgttca ttacttctcc tataaattta aataaaaatt gtaactaaaa aagttgaaat
    11461 agagttaaac ttagctatac ttaaataaaa aggaaaaaaa tgcttataaa atttaaaaat
    11521 catagtccca aactaggtca aaatgttttt gttgcagagg gcgctaaaat cataggagaa
    11581 atagaaatag gagatgaaag tagtatttgg tttaattgtg ttttaagagc cgatgttaat
    11641 tttataaaaa ttggcaaaag aaccaatatt caagatctta gcacagttca tgtttggcat
    11701 agggaatttg atgaaaaagg aaagttaaaa gatgctggtt ttcctacaat aataggagat
    11761 gatgtaacta taggacataa ttgcgttatc catgcttgtg tgataaaaaa tcgtgtttta
    11821 atcggaatga atgctgttat catggataat gctttgatag aagaagatag catagtgggt
    11881 gctggaagcg ttgtaacaaa gggtaaaaaa tttccgccac gctctttgat acttggaaat
    11941 cctgcaaaat ttgtgcgtga attaaacgat gaagaagtca gctttctaaa acaatccgct
    12001 ttaaattatg tggattttaa aaacgagttt ttaaaagatc ttcagtgata ttttgaagtt
    12061 taggcgagag ttttacttca aatttcacaa aacgatcaag atctaaaaaa ctctcatcga
    12121 gttttgaaat ttgctctttt gtataatctt gaatagtatt taaagatgac tttttaagaa
    12181 gtcttttttc tttgtagact aattctaaaa gttctttgcg ttctaaattt tcatcttgat
    12241 ttgggttttc gtcaaaaaca taaagttcat caaaaaggat tttttgcgtg tttttatcat
    12301 aaactctaaa aagcttttta aaatgaggta gggttgattt ttcgttattt tcgctgattt
    12361 tgattttagg ttttatgcct tgatcttcta aggctgcgag tttataaacg caactaaaaa
    12421 tagggtcact tgaagcagtg atcaatcttt cacctacacc aaagatatca ataggtgcat
    12481 tttgttcttt gagtttttta atgctccatt catcaagtgc gttagaaact atgattttac
    12541 atttttgaag tcctgcttga tcaagctctt gtctgatttt caaactcaac tcaagtaaat
    12601 ttccagaatc tattctcacg ccgccttctt gaataccaaa ttctttaaaa actttaatcg
    12661 catttttaag tccgctattt agacaatcat aagtatcaat caaaaaaaca ggattttttg
    12721 gataaatttt cacataagct ttaaaagctt caagttcatt ttcaaacatt tgcacccaag
    12781 aatgtgccat agttccattg atagggatat tataaatttt tcctgctaaa gtacaagcac
    12841 ttcctatgca acctcctata aaagctgctc ttgctccttt taaggctgct tcacttcctt
    12901 gtgctctgcg tgaaccaaat tctaaaattt tactgtcttt agctgcacgc acgatacgat
    12961 tggttttggt agcaataagg ctttggtggt ttaaacttaa aagtaaaaaa gtttctaaaa
    13021 gctgtgcttc tatggttgta gctttaatac atagcaaagg ttcgtttgga aaaatcactt
    13081 ctccttcacg catagcataa atttcaccct taaatttaaa gttagctaaa aaatctaaaa
    13141 attctgtatc aaaaatacct tgttttctta aaaattctat atcttctgca tcaaaactca
    13201 aattttcaac aaagtctaaa atatcttcaa gacctgcaaa aatagcaaaa gatcctgaat
    13261 ctggaatttt tctaaaaaat atatcaaaat aacaaatttg atctttttta ttgtttttga
    13321 aatagccttg agacattgta aattcataaa aatcacaaag caaggctaaa gaagttttag
    13381 aagtcatcaa agcttatact acccttagaa taattcgtta ctttactttc aaagaaattg
    13441 ctcttttgat cgttaaattt tgaaaaatca tctacccatt taataggatg ttttgcatta
    13501 tataacttat ctaaattgat cgcacttaat ctttgatcta caagataatg gatatattct
    13561 tctatgatat catcagtaaa gcccatgatt tgattttgag tgatgtattt accccatttg
    13621 atctcaagat ctccagcttt tttaaacata tcataaattt tattgatatt ttcatcatgg
    13681 aataaatcag gtctttcttt gcgtactgaa ttgatcatat tttgaaataa taaaagatgt
    13741 gtgatttcat ctctttggat aaagcggatc atttgtgctg aacctagcat ttttcctgca
    13801 cgtgcaagtg cgtaaatggc agtaaaacca ctataaaaat atactccttc taaaatttga
    13861 tttgccacca tagccaaaag aagtttatta tcatctacat cgcctgctaa ttcttcataa
    13921 atacttgaaa taaagtcatt tttttcacgc aaagtttcat catgcttttc catttcataa
    13981 atcaaatctg tattatcgca aatcgcttct accataacag cgtaagattt tgaatggttt
    14041 gcctcttcat aagcttggcg tgccaaaacc gcattgattt caggagctgt gatgtaaggg
    14101 ttgatattat ctgctaaatt attggtttgg aaactatcca tagaaataag ctgactccaa
    14161 accaaatcat acattctttt ttcacctgca gttaaattac agcgataatc aagtgcatct
    14221 ttagttgtat ccacttcttt tggaaaccaa gtatttgcct ccattaaatc ccaaagtttt
    14281 aaagcccaag tatattttgc cttagtgaaa tttaaaattc catgtgggtt gccatcaaaa
    14341 actttacgat ctcctagggt ttcgtttgaa cttggattgt aaattctttt tctttgcatt
    14401 tttaaccttt ctttatgctt tagtagctat acaactttga gttaaaatat cgtgtaaatt
    14461 taaacgatct tttcttacaa aactgacaaa taaaccaaag agtaagccaa aacttataat
    14521 aaatatcaca tatcttagta aaattctaag aaaacttagt ttctttcccg tttttatatc
    14581 aataagatat aaatcatatg ctttaagacc tgggctttgt gccttttttg ttaaaaaaat
    14641 agcttgaatc aaaccaaata aaaaagtaca taaagttgtg ataaaatggt tgtttaaaaa
    14701 agcttcttta gagcctaata aaaaataaaa taaatacaaa ataggaacat aaataagaaa
    14761 aatatctata agcaaagctc taaatcttag ccatctagag ctaatttttg ctttagtttt
    14821 catttaattt ccacggcttc ctggttttat agctttattc ccttttttac aaagtggaca
    14881 atttgtttca tcgtaaattt caaattcaaa atttcctaga gtaaagagtg gtaaattttc
    14941 aggtaatttc gcattatctt ttcttggaga ttttaaattt tctactgcac aaaaaccacg
    15001 atttgccaat gctgcaaaac ctacaacaat accacctaaa ctttcaatga tttttgcact
    15061 ctctaaagca ctaccacctg tagtaatgat atcttcacaa attataaatt tttcaccctt
    15121 ttttacttca aaaccacgtc ttaaagtcat ttctttattt actctttcag tgaagataaa
    15181 acgtttacta caagctcttg caagctcata acctgctaaa attccaccta aagcaggaga
    15241 gcaaatgcta tcaaattcta tcttatagct tgcaataatc tttgcaagtt catcacaaag
    15301 ttttgctgct aattttggat cctctaaaac ttttgcactt tgaagataaa actgcgaatg
    15361 cttacctgaa cttagtaaaa aatgcccttc taaataagca ccacaatctt tataaatttg
    15421 ctctaaattc atcgttaaac ctttaaaagt tcactttctt tgctttttac accctcatca
    15481 atttttgttg tataggtgtc ggtaagtttt tgcacttcat cataagcttt ttttgcttca
    15541 tcttcgctta ttgccttatc tttttctagt tttttaactg catcgttggc atctttgcgt
    15601 atatttctta tagaaacttt tgccttttca cccatagctt tagcttgttt tacgttttct
    15661 tctctttgct ctctagtcat cggagggaaa aataatttta cactttcgcc gtcattgttt
    15721 ggattgacac cgatatttgc agctgcaata gcgctttcta tggtttttag taaaggtttt
    15781 tcccaaggag tgatgctaat agttgaagca tcacttgcta aaacagttgc tacttgattt
    15841 aaaggagttt gagttccata ataatccact gtaatatgat ctaaaatatg gatattaact
    15901 tttccagttc ttaaagtggt aaagtctttt tttaaggctt ctaaagattt ttcactttgg
    15961 gttttttgtt tgttaaaaat ttcatttagc attatcattt cctttaatta tttacttgaa
    16021 ttaacatcgc ttggaagttg tggtgcactt ggagcgatag aatttgtgtt tggggtagta
    16081 ggcacaatag gagcacttgg aatagtagtg ttgttgtttt ctactttaat tttctctgct
    16141 agagagtcct tgctagcttt attgtataaa taaccaagac caatagtatt tgcaataagt
    16201 aaaattccca tgacaaaggt aaattttgcc aaaaatccag ccggtccttt ggcgccaaat
    16261 aaactttcat tgcttccact ataagctcca agtcctatac ttgaactttt ttgaagtaaa
    16321 actgctatac aaataactac aacgatgata aattgtaaaa tgattaaaag agtgatcatt
    16381 gaaatttcct aaaagttaat ttttaaatga ttattttagc taaataaaac ttgaaaagtt
    16441 ttgaaacttg aaaagttttt gtgagaaaaa tcccacaaaa acttatctgc tattgaagct
    16501 tcttaagata ttaagtaaag atacgaaaag attaacaaaa tcaagataaa gtgctactgc
    16561 accttcgatt ggagtttcat aatttccgcg gataatattt tgcgtatcat aaagaatgta
    16621 aaatgaaaat aatattgcag ctactgctga aatagctaga ttaactatac tgctttggaa
    16681 gaaaaggttt agtaaagatg ctgctacaat aacgattaat actataaata aagctttacc
    16741 cataacagta aaatcttttt ttgtattcat agcaaataca ctaagtcctg caaaagcaac
    16801 tgttgttaaa gcaaaagctt gagcgatgat aattcctcca gctggtagag ctaaaactga
    16861 aataagtaaa ggtgtaagcg ttaaacctga gcagaaagta aaaccaaaaa gtaaaacaag
    16921 atttaatgga gcttctcttt ttttccattg caaagcaaat aaaagtccga tttcaacagc
    16981 aaaaaggatc caaaaagtta cttgtgattg tataaaaaat gatgctaaag caaaaattcc
    17041 tacatacgca cctactgttg cagctaataa tgaagcagca aaaagttgat aagtttgttt
    17101 aataaaaata cttaattcgc ttgagcgtgt attttcaaat tcttttgatc ttgagtagtc
    17161 tctatcataa agactcataa aattctcctt gcaaaattgt tagatttttt aaaatcttga
    17221 gcgaaatcta acatattaga ctaaataaaa agttaattta tataatatct tatgcttaaa
    17281 tgaaatcttt gctgaaattt tgttataatt tcaagatttt agtttcaggt tggttttatg
    17341 gaaaatctta ttagcggtgc gattaagttt atgcaagaag actttaagga gcatgaagaa
    17401 ctttttgaaa gtctaaaaaa taagcaaaat ccccatactc tttttatagg ttgttctgat
    17461 tctagagtaa ttccaaattt gatcactaat acgggtccag gtgagctttt tgtaatacga
    17521 aatattgcaa atatagttcc accttatcgc gttggagaag attacttggc gacaacttca
    17581 gcaatagagt atgctttaaa ttcattgcat attaaaaata tcgtcgtttg tggccatagt
    17641 aattgtggag gttgcaatgc tctttattat tctgatgaag agttaaataa aattcctaac
    17701 gtgaaaaaat ggcttactat gttagatccg ataaaaaaag atgtgatgat ttttgcaaga
    17761 gacgatttgg ctatgcgttc atggcttaca gaaaaattaa atttagtaaa ttctttgcaa
    17821 aatatactta cttatccagg cgtgcaagaa gctttagatg aaggaaaaat agaagtacat
    17881 gcttggtatt atattataga gacaggtgaa atttatgagt atgattttaa agcaaaaatt
    17941 tttactttaa tacaggatag gaaagttcaa tgaaaaaaat tatttttagt ttatgttttt
    18001 ttattttaca ccttggagca caagaattta aatttattga tgcgaatatt agtaaagaag
    18061 atgaaggaat ttatgcttta gttgaaaaat atgttgatct taacaatcaa attaaagaat
    18121 ttaagaaaaa caatgatgaa aattcaagca cttttaatgg tattttaagt gaatttgaaa
    18181 aagacaaaaa gactatttta gcaaaaatac ccgatatgat agtaggacaa aagattaatg
    18241 aagaggcagt ggctagattt ttaaaagcaa aagaaaaatt actagatgtt caaaaaaaga
    18301 atattaataa gccttacatt tatacagatg ccactcttaa tctagtttat tttaacattg
    18361 tggaaagttt ttattcttct ttgtttgaag tggaaaaact ttttaaaaat acagcaagca
    18421 gtgaagattt gattgctact gttgataagg caatggaaaa tttacaaaat tcttctaatg
    18481 ttaatttaga tagttttaaa agcaaaatta caaatccaga agaattagaa aaaattaccc
    18541 taaaagaaag atatatcagt aatgccgtag attcttattc tgaaattctt aagtatttac
    18601 gttcaaatgc agatttgctt gaaagtaatt atattttttc attactcgag cttcaagttt
    18661 ggatagatcg tataaatgag gcaattgggg taagttttgt taatatcgga aaaatagtaa
    18721 tttctgcttt ggttttagta ttttttatat ctttaagacg tttttttgca aatatagtat
    18781 attttttcct tgttcagctt ttttatagaa ataaaaatga tgtagatgat attaaagtca
    18841 tttttattga gaatattaaa aaacccgtag gtttcttgtt gattgtctat gctatttctc
    18901 tttgtcttac tatagcaact tatcctgcac ctttgagtgt aaatttaagt aatttttttc
    18961 atatagttta tgcagtttta attgcatggc ttattttaag aatgcttgat ggttatggcg
    19021 tggtattggt ttctaaactt gctcaaaaaa gtggaaaaaa agaagttgta aatttaatta
    19081 ttaaaatttt atattttgtc attattatca tagctttatt atatattctt gctcaacttg
    19141 gttttaatat ttcggctatt attgcatctt tgggaattgg tggtttagct gttgctttag
    19201 cggcgaaaga tatcattgca aatttctttg cttctatact cttacttttt gataatagct
    19261 ttaatcaagg agattgggta gaggtttcag gcatagaagg aactgtggtt gaaacaggac
    19321 ttagaaaaac tactattaga acttttgata attgtcttgt atttttacca aattcaacta
    19381 ttatgggagc taatatcaaa aattggagca aaagacgcat gggtcgccat gttagaatgt
    19441 atttgggtgt tggttatgat gctactcctg aaaaactaga acaatgtgta aaagatctaa
    19501 gagaattttt gcatacaagt gatttagtag ctcacgatga ggatagcgca ttaaaatatg
    19561 gcgatcatac aacaaaatat cgtcaaaatc ttgtatctat taatgattta gaaggctata
    19621 aaaatgcttg ttatgtggct ttaagtgaat ttgcagatag tagtattaat atagagcttt
    19681 atttttatat caaagaaata ggtggaaaag attttagaga agctagacaa agtttaatgc
    19741 ttgagtttat gcgtataatt gaaaaaaatg gtttaacctt tgctttccca agtcgtagta
    19801 tttatataga aaatttacca ccccttgatt tgcaagcaaa agctataaaa tagcaagatt
    19861 ttatcttgct attttttaaa ccggcataac gcgtatattt ggacttaatt cttcttgtaa
    19921 aattgtttca atagcataaa gtgttgcacc acttccacta gaacaaccac tacaagcacc
    19981 aagataacga atataaacat caattgctgc accttcagcc ttttgtatat caatcacttc
    20041 caaatctccg ccatcattat gaagcatagg gcgaatttca gcatctaaaa cactttcaac
    20101 tgcttttaat tgtcccacta cggtcatttc atcaaaagct acatcacttt tcattgtatt
    20161 tttgagtttt tctctatcta tttcagctct agtttcagct aaaatatcta caaggtaata
    20221 atctcttttt tcatgtccgc ctggtttgat acaggattta caaaaagcac ccgctttagt
    20281 gtattgtgtg atttcttcta cgctatgcaa atcattaagt ttaatcactt ctttaatagt
    20341 tccaagactt accctagcgc attcgcaaac tataatttga tcttcaaaat cttcaggact
    20401 tataccttta taatgcgctg ctgcttgttt gattacatca taagccataa ccgaacagtg
    20461 cattttttga ggtggaacag ctggagtttc tggattatca cgcatagcaa attccacatc
    20521 taaatttgtg atttttactg cttcatctac agtttttcct atacaaagat ccaccatagt
    20581 atcactactt gctatagctg taccacaacc aaaactttta aattttgcat cgataatttt
    20641 atcagttttt tcatctacaa gccaaaaaag tcttactgca tcgccacaac tttctgcacc
    20701 aaaatcagct acgatcaatt ttgcattgcg tgctttagca tcttcttcac taaattctcc
    20761 catatgttga ggattattca ttctatcttg aactttttgt gaatactcat cccaaatgga
    20821 tccaccaatt aaactatttt ttcccatttt tcatccttat ttgtaattat ttggattata
    20881 agcataagta caagaaattg ctcttaatct ctgtgttgca tttttaattt gttttgctgc
    20941 ataatcaatt tcttcttcag tgttaaaacg tgacaaagaa agccttaaag ctgtatgcgc
    21001 taaatcatgc tccgcaccga tagcttccat aataggattg ctttctaaag cttcacttgc
    21061 acaggctgag cccgtacttg cagctatacc atttttattt aaatcccaaa gcattgcttc
    21121 gccttcaaca cctttaatac ttgctaagat tgtattaggc acacggtgtt ccctttttcc
    21181 aaccactgtt gtatcgggca aggccaaaat ttgatcttct agtttatctc ttaaacggcg
    21241 tatatgagaa tcttcaaaat caagcatagt atttgcaata cgcaaagcct cgcccatagc
    21301 cactatgtaa ggcacattta aagttccgct tctacgacca cccatgtgtt ctccaccgtg
    21361 taaaagtgga gtaagtttaa gtcctttttt tataaaaagt ccacccacac cctttggtcc
    21421 atgaaattta tgtgccgaaa atgaagcaaa atcaactcct acttgagtta aattaacctt
    21481 tattttacct actgcttgag tagcatctgt atgaaaaaga gcaccaaatt catgcgcaag
    21541 ttctgccatc gctttaatat caaaaatcat acctgtttca ttatttgccc acataacact
    21601 tacaagtgct gttttatcgc taatcacttt acgcaaatct tctacagtag aaaccccttc
    21661 ttcgtttaca ggaagttcta taacttttac tccaagactt tttaaaaaat aagcagcagc
    21721 agtaacagca gggtgttcta cactagaaat aatcacttca ttgcgttctt tatctaaaat
    21781 atgatcaaaa tacacaccct taagcaccca gttaatgctt tctgtcgcac aggaggttac
    21841 aactatgtca tctaggtcat ttgctccaag tcctgcataa agtttatcca aagcttctct
    21901 taaggcagga tgtgttgcgc taccatattg atgaaggcta tttggatttc catacatatc
    21961 ctttaaaaaa ggtagcatca actcataagc attaggatca agcattgtcg ttgcgttgtt
    22021 atctaaatat actttcactt taaaatcctt aatttatcct taattttaat taggatattt
    22081 tttatcttta tttaaaaacg gataataaca aaaatttata aaaattaggt taaaaattat
    22141 aacaaaaata aaatgctaaa gtaaaatttt aaagtgaaat attttgtgaa ttttatatag
    22201 caaaaatga
//
LOCUS       DARBAR010000013        22048 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.013, whole genome shotgun sequence.
ACCESSION   DARBAR010000013 DARBAR010000000
VERSION     DARBAR010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22048
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.013"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..348)
                     /locus_tag="SB815_000359"
     CDS             complement(<1..348)
                     /locus_tag="SB815_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEG0906130.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNFKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLETTPSKRPKKLFYISVEAFYIEKEQLREIYQKL
                     EFYEEFKELLEQFL"
     gene            complement(345..2324)
                     /locus_tag="SB815_000360"
     CDS             complement(345..2324)
                     /locus_tag="SB815_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEG0906131.1"
                     /translation="MAKIFVFLVFVFTTLFGVYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVINEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISETSINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(2324..3415)
                     /locus_tag="SB815_000361"
     CDS             complement(2324..3415)
                     /locus_tag="SB815_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEG0906132.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(3412..4617)
                     /locus_tag="SB815_000362"
     CDS             complement(3412..4617)
                     /locus_tag="SB815_000362"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEG0906133.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYKTQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(4629..6824)
                     /locus_tag="SB815_000363"
     CDS             complement(4629..6824)
                     /locus_tag="SB815_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEG0906134.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLVRRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKES"
     gene            complement(6808..7032)
                     /locus_tag="SB815_000364"
     CDS             complement(6808..7032)
                     /locus_tag="SB815_000364"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEG0906135.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(7043..7762)
                     /locus_tag="SB815_000365"
     CDS             complement(7043..7762)
                     /locus_tag="SB815_000365"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEG0906136.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSTVKNN"
     gene            complement(7814..9007)
                     /locus_tag="SB815_000366"
     CDS             complement(7814..9007)
                     /locus_tag="SB815_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG0906137.1"
                     /translation="MRKNILIFFCFFLFVDISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNEDLLKSKSN
                     MEGKLISLMAKDFAYDLPIPQGYIESEESFMAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINESLKDYNAQLAKLQSLKQKQISEINKQKTDRAIYAKKLDDLQAQ
                     QEELRKTLNQLKIINDKEDANSNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(9004..9810)
                     /locus_tag="SB815_000367"
     CDS             complement(9004..9810)
                     /locus_tag="SB815_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEG0906138.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILITNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNSIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(9797..10462)
                     /locus_tag="SB815_000368"
     CDS             complement(9797..10462)
                     /locus_tag="SB815_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0906139.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQATKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(10532..11710)
                     /gene="trmB"
                     /locus_tag="SB815_000369"
     CDS             complement(10532..11710)
                     /gene="trmB"
                     /locus_tag="SB815_000369"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEG0906140.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSRLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLVQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(11710..12945)
                     /locus_tag="SB815_000370"
     CDS             complement(11710..12945)
                     /locus_tag="SB815_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEG0906141.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     GSSQVVSSTSKALPPQVEHLSASTDGSSKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSSKVKAAQ"
     gene            complement(12890..13858)
                     /locus_tag="SB815_000371"
     CDS             complement(12890..13858)
                     /locus_tag="SB815_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG0906142.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRYILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            13936..15036
                     /locus_tag="SB815_000372"
     CDS             13936..15036
                     /locus_tag="SB815_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEG0906143.1"
                     /translation="MFRLDRRILTHFDYIQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            15090..15166
                     /locus_tag="SB815_000373"
     tRNA            15090..15166
                     /locus_tag="SB815_000373"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:15124..15126,aa:Ile,seq:cat)
     gene            15375..16550
                     /locus_tag="SB815_000374"
     CDS             15375..16550
                     /locus_tag="SB815_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEG0906144.1"
                     /translation="MAKINKLTDSFLKSIKCESDKKFIKFADPSLKGLYVFIYPSGKK
                     LFKIRQANDTYIKIGEYPLLSLAELREIALNAFKLKAKGQNIKNAKRLKFGDIYDEVL
                     EKCKADGLSLKEIQRGLKYKNGVFKNFKDVDIESIKRSHVIETLKTIEHQIPTLIKAK
                     GWINKIFKYALQLEIVENNPVTSIDNSIVFKKASKVIHQPTLLENDKIKEYILALKNS
                     DLKKTHKNLMLFNLLTAQRPGNVIKATWDEIDLKNAIWTIKAEKMKMRKEHIITLNSQ
                     ALKILKEQKKMKVNDYIFAGSSKNGCNSENITCNINKRLGYKGIQSAHGFRAMFRSLA
                     NEHQLDHGVSMDIAEQCLAHEQKNAILKAYNRSENIELKRKLMQWWGDYIEKLAGDF"
     gene            complement(16547..16753)
                     /locus_tag="SB815_000375"
     CDS             complement(16547..16753)
                     /locus_tag="SB815_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEG0906145.1"
                     /translation="MAKFGKIEKLLSTKEVAEYLGFTPLKIRKMRMRVNQNKFNFPKG
                     IKIGSTFKYEKAEIDKWLQTCKVI"
     gene            complement(16755..17108)
                     /locus_tag="SB815_000376"
     CDS             complement(16755..17108)
                     /locus_tag="SB815_000376"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906146.1"
                     /translation="MKEFKEYIKAKIALEKELENTQEMLKQTIKEMLLLRNDNAFNQN
                     ANDEMLKAINKNWKITASLESLSDTLEIKVLEQSTSYNRFCFGDVLILISNFLSYEEQ
                     KAIIAKLGFDLEKGV"
     gene            complement(17126..17881)
                     /locus_tag="SB815_000377"
     CDS             complement(17126..17881)
                     /locus_tag="SB815_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEG0906147.1"
                     /translation="MFHPQLYNDHFQNFKRYNIPKAQLVIADIPYNLGNNAYASSPEW
                     YINGDNKNGESKKANKAFFDTDNDFRVSEFMHFCSKMLIKEPKECGKSPCMIVFCSFE
                     QQTMLIEVAKKYGFNHYINLVFRKQSSSQVLKANMKIVGNCEYALILYREKLPKFNND
                     GKMIYNCMDWQKDEGIPKVHPTQKPVKLLERLITIFTDAGDVVIDPCAGSGSTLLAAT
                     NLNRKAYGFEIKKDFFKSANEIMFKHIERSLFA"
     gene            complement(17859..18125)
                     /locus_tag="SB815_000378"
     CDS             complement(17859..18125)
                     /locus_tag="SB815_000378"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906148.1"
                     /translation="MKKNTNQQLEQLKELNQGELNQEIEVLTKRALAIHRSIQRVKDE
                     RSILNQNIKDYQSEFNEIMEKIAFLKEPNLFNQKGSDDVSPTAL"
     gene            complement(18109..18480)
                     /locus_tag="SB815_000379"
     CDS             complement(18109..18480)
                     /locus_tag="SB815_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906149.1"
                     /translation="MNITRELEAYDLAKLVLNNDLKYFFKDAKIVGENKERRLCFYFS
                     DSFVLALFEKEKENILQRLREEYKKKLEFYKRIDLVFYSIAAKGINELKARSKEEQEV
                     LERGLLKLENIIKRIKNEKKY"
     gene            complement(18481..18705)
                     /locus_tag="SB815_000380"
     CDS             complement(18481..18705)
                     /locus_tag="SB815_000380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906150.1"
                     /translation="MKVNFIFKGTIKCSKCNLEFVPNSKFFKGLDEIIGDVKSVSLDG
                     FCPECDNKLKTSFKVEKITREFNKTYTMRC"
     gene            complement(18714..19475)
                     /locus_tag="SB815_000381"
     CDS             complement(18714..19475)
                     /locus_tag="SB815_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906151.1"
                     /translation="MRSTTRNKSIDEFAKDKFKGIKTNDKFYPFKMRYINIKPRNKSL
                     SNTIIILDNSKACFELSKKNKKAKDYYIEVQFNGLYQPSKQIEAEVWKILSKMIKRFK
                     AYSVDIACDFDDDLAVSKPREFKHQERFSKLKIFGDFHTYKTSMYINNPQSKYYKLER
                     ILLYDKYEKQKYYHKENIKREFVRWKRLELTLKIKDKFLDRIENDINDALDLMQDYLR
                     MIGIWHFNMRMILEQTKYLNNPRWAKIFKPYALAS"
     gene            complement(19412..19726)
                     /locus_tag="SB815_000382"
     CDS             complement(19412..19726)
                     /locus_tag="SB815_000382"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906152.1"
                     /translation="MSFKPIQKDNDAFKKAQRAKVIESLAMRGYALVKISSNGFLMKK
                     GFEKDILCKQIIAQDTTASVSLSTKKPFTNTLKDGGFLKKCEAQQEIKALMNLQKTNS
                     KA"
     gene            complement(19805..20125)
                     /locus_tag="SB815_000383"
     CDS             complement(19805..20125)
                     /locus_tag="SB815_000383"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906153.1"
                     /translation="MSNKPYLENEIKALKYQLLIEKQKHKKTKEKVFKLKNIQGEKYE
                     KLKAEFAKNQLFVFRDDELFLWVESLMRELKTKILCTNDELSKKACDILVFKLEKRRK
                     NFNY"
     gene            complement(20512..20748)
                     /locus_tag="SB815_000384"
     CDS             complement(20512..20748)
                     /locus_tag="SB815_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002787289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG0906154.1"
                     /translation="MTSEELKQFCKEQGLTYKELAELIGFGEGAVKNAISTEKISFQM
                     AHAINMLKKIFELEAKLEKAEAIKKDFKAWINEN"
     gene            complement(20762..21529)
                     /locus_tag="SB815_000385"
     CDS             complement(20762..21529)
                     /locus_tag="SB815_000385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906155.1"
                     /translation="MTEEKENIVNFKIKIIHEENIELGIMANSLLSFQKLMDSFISKE
                     HGITQSKIFLEKVETGSDIYSLVFEIAGEVLPIIAPIQALNEFIELIISFKNIKSKSI
                     EEIEENPHFTKYNANNLKNIFAPVTINQNTFFINHKGEELLRINSDEAELIYENANYI
                     CEKKEIEYQKIHENALITMYKTTNKIDNKTKHKAKCDALSPYAVDVSFSDEKIAEEVL
                     KNPYGFNFLVDLEYYKNDKNKIILYRIFNIKDKISLE"
     gene            complement(21667..21897)
                     /locus_tag="SB815_000386"
     CDS             complement(21667..21897)
                     /locus_tag="SB815_000386"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906156.1"
                     /translation="MEQEIAKIKKFKLECKNCETQIIIDTHNSIKNCPVCGLKFYDNL
                     ESPFENLHEQILLINKNKNVKVYFVCEEKEKR"
BASE COUNT         7122 a         3877 c         2618 g         8431 t
ORIGIN      
        1 taaaaattgt tctaaaagct ctttaaactc ttcataaaat tctagttttt gataaatttc
       61 tcttaattgt tctttttcga tataaaaagc ttctacgcta atataaaaaa gttttttagg
      121 acgcttagaa ggggtagttt ctaaaaagcg tttcaaagta agaaaaaaat ttaaacctat
      181 gccaaaacca ctctctgcga taataaaatt ttcttgattt ttccattcaa aagaatgagt
      241 gtaaacaaat ttgctttcat ttaagccatc tttgaaatta aaataaaaat catcaaaatc
      301 caaagaaaaa ggagtattat ccttaaaaat tagcttagct tttttcatcg gttgttataa
      361 aaataactct caactccatc agcaataccc ttaaccaata aatcttgaaa agctttattg
      421 gcgattcttt tgccttcatt tggatgtgta atatagccaa tttcaatcaa aattgcaggc
      481 atttgcgcac ctactaaaac ccaaaaaggt gcttctctta caccgccatc tacaatttta
      541 tactttttgc gtgtttgagt gagtatattt ttttgtacat caatggctag tttatttgaa
      601 gcaacgattt tttcacgatt taagaaattt aaaatacttt gttttgagaa ataattaatc
      661 tcttcaaaat ccccttgatt ttctttttct gctgcctttt tacttctttc acttcttgca
      721 ggacttaaaa agaaagtttc cacgccttcg ctacttttgg cttttgtggc atttggtgct
      781 gcgttagcat gtatagaaat aaacaaatcc gctcttttat cattggcata tttggttcta
      841 tcacgaagat tgataaattt atccgaactt ctagtataaa gcactttata accgcgtttt
      901 ttaagttcat ttccaagttt taaagccgta cttaaaacta tatctttttc ttttaaactt
      961 ccttttttat cacttaaagc accgctatct tttccaccat gccccgcatc gataaccaca
     1021 agctttcctg atttgtaatt tgtatttaaa gttttactag aactttgagt tgcttttttg
     1081 tttgcatttt gatttgtagt ttgtatataa aaacctaaag tgagattatt attatccaac
     1141 tcctttaaaa gtttaaattc tttaggagca ctcaaaacca cacgaacggt ttttggattg
     1201 tattgagtaa ctgtaatcac attttgtcca aaagtaaagc tttttctatt accttctaac
     1261 acacccttaa aacttacaac atatcggaat ttttgatctt tggtatcaaa tactgctatt
     1321 tctttttcat ctaaatcatc gcttaaattt aacaccacag cattagaaat tttatccaca
     1381 tctaaaacat ataaaggttc ttgattttct ttttcattat tggttttttt atcttgtttt
     1441 tttgtttcta aaactttggt tttaatttct gttttttgat cttgcttttt ctctgaaatt
     1501 ttactaactt gctcagtctt tttttggcta gtagtttctt ttgaaaaaat tattttttct
     1561 tctttaaaag atatatcaat aggaattttt tctttagcat aaaccactat gcgtatggtt
     1621 ttgggattaa attgtgaaat cactaaacga tagtcatcaa atttaaactc ttttttaccc
     1681 ccttctaaaa ccccatcaaa atcactaata aaacgatagt ttcctttttc gtctaaagca
     1741 aaacttttta attgatcctt atccaaatct gcatttagtt caaactctac accttggttt
     1801 gttttacttg actttaaaac ataaatttta tcatcgcttt ttgctttaga aacgatactg
     1861 ctctttggtg cttgcgaagt tttagaattt gttttttctg tattttttat ttgttcgtta
     1921 gatgattttt tttcattttt ttgaactgtt tttataggtt caaaagttga tttttcagtg
     1981 tcttgagaaa tattttgaac cttaatatct ttaataacag cctttcttaa agcattaata
     2041 cttgtttcac ttataccact ttcttttaac tcattagcat atgacttgtc atctaaattt
     2101 aaagtatttg aactgataat caatcttttt aaaatttcaa ttttagtttt ttcatcttca
     2161 ttaataacac tttgtatata aaggcttttg agctgatggt gaaattttac ttgcacttca
     2221 cttttagaac cgataaaatt tttatcaaaa tttgcaagtt cattttcata aactccaaaa
     2281 agagttgtga aaacaaatac taaaaataca aaaattttag ccattattca ccattaacca
     2341 atttttccat aagttcttta acactgataa gcttatctaa acgatatcca tttgcacctg
     2401 taaagaaaag tcctgtttct tttttgcctg accacgcatc aaaaagccta tctgctatac
     2461 aataccctac tttagtcgcc tcttttccac gtccacaagg cgctacacaa ttgcttatac
     2521 aattaatctt tggacccatt cttttatcta ccaaatttaa aagattggtt ctaactccac
     2581 gagcaggata gcccacagga gatttaataa gctctatatc ttcttcttta gaagctagca
     2641 aaacgctttt aaactcttca ctcgcatcac attcaaaagt tcctatgaaa cgcgttccca
     2701 tttgaacacc actagcccct aaagaaatag cattttctat atctttttta tcccaaattc
     2761 cacctgcagc aatcacggga aaagaccccc aatttttagc ctcttctacc acaggagcaa
     2821 ttaatttttc tagctgataa ttcggatcta agcactgctc ataagtaaaa ccttgatgac
     2881 ctccactttt tggcccttct aaaaccactg catcaggtaa gcgattgtaa cggctttgcc
     2941 atcttttgca aataattttt aaagcctttg cagatgaaat gataggcact aaagccacat
     3001 caggaaaatc tgcagtaaat tcaggtaaat ttgtaggaag tccagcgcct gaaacaatca
     3061 cattaaaacc aacctcacaa gcatcgcgtg ctattcttgc ataatcatta cttgcacata
     3121 agatattaca ccccaaaggt gcatcgccac aaacttttct tgcattatta atcaaagctt
     3181 gcaaaccctt gcgtgagtaa aaattttcac ttccataagg cttagcgttt aattctttac
     3241 ttgcatactt tctttcttca taatatcctg ttcccacaga agaaataatc ccaagtccac
     3301 catttaaaga aactgcagaa gctaatctat cccagcttat gcctagtccc attcctcctt
     3361 gaaaaatggg atattttata gtatgttttc ctatttgtaa gggttgtaaa ttcattcttt
     3421 tacctttaat tttgcaaatt ttcttttacc tatttgtaag atgtattctc cttgttctaa
     3481 atacatttgc tcgtcgctaa ctttttgaga atttacactt actgcattag cactgatgct
     3541 tcttcttgcc gcagaagtag aactttccaa accacattca accaaagcct tagcaagcca
     3601 aatttttcct tgtatttcaa actcagccat atcacttggc aaagcatttt gagaatgaat
     3661 tctatcaaat tcagacttag cattattagc ctcttctttg gagtgaaaac gctctgtaat
     3721 ctctaaagct aaattttctt tagctttttt aggatgtaaa ttgccttgtt ctatatcttt
     3781 ttttatttgc gcaatttctt ctagactttt ttgacttaaa agttcataat atctaaacat
     3841 caattcatca ctaatactta aaattttagc atacatatca ttagcttttt ctgtaacacc
     3901 aatgtaatta tttaaactct tactcatttt gtttacaccg tctaaacctt cgagtaaagg
     3961 catcataatc acagcttgtt cttttcctat gttataaact ctttgaagct gtcttcccat
     4021 caaaagatta aatttttgat ccgttccacc catttcaata tcgcttttta aagccacact
     4081 atcatatcct tgaagtaaag gatacaaaaa ctcgcaaatc gaaataggac tttgctcttt
     4141 aaatctcttg gtaaaatcgt cacgctcaag cattctagct acactaaaag ttgaagtaag
     4201 ctctactata cccgcggctc caagttcatt aagccaagta gaattaaact taatctgtgt
     4261 tttttcttta tccaaaacct taaaaacctg cgttttataa gttttagcat tgattaaaac
     4321 ttgctcttta tccagctttt tacgcgttgc actttttcca cttggatcgc caatttgtcc
     4381 tgtaaaatct ccaatcaaaa actgcacaat agctccatgt ttttgcaaaa aagccatttt
     4441 tgttaaaacc acgctatggc ctaaatgtaa atcaggcgct gtaggatcaa accctgcctt
     4501 tataaagaaa ttttcaccct tttcataata atttttaatt aaattttcta ttctttcttc
     4561 atcaataagc tctgcacaac cacgcttaac ttctgctaat atttttttta tatccataat
     4621 aaaccttttt aactttcttt ataagcatca tttaaagatg taaaatctaa aattttacaa
     4681 cgagatttta acctatcctt gacactatct ggattgatat tatcaggaat ttccattgta
     4741 atctcaaaat aatctaccgc cgaatttaaa tcacttgata aattaattgt taataaattt
     4801 atctgcattt tagctaaaaa tgccaaaaat tccgctaaaa cacctttttt attttccaaa
     4861 gaaaaaatca atttataaga tttagggatg ttagaatccc attttataaa taccatatct
     4921 tgattattat ctatcatttt atcagctcta tcgcaaagct tatgatggac aatagcgtta
     4981 ccacctttaa caaaagctaa aacagcatca cctctttttg gatggcagca aaaatcaaaa
     5041 tccacattag cgattttatg gttacaatat agagtaaaat ttcctatttt ttgctcttta
     5101 atctcatatt tatcaaacca atatgacttc ttggcgtatt ttttaagacc attaactata
     5161 tctttcaaat aagcactatc tgttgctact tgtctaatac gtctgactaa attttctttt
     5221 tctatccaag tttcaattct gtttttatca actccaaaaa taaaacttaa catattaata
     5281 gaacttgcta gattaatctc tctgattttt tgcttgcaaa attcccttat acttgctttt
     5341 gcttttcctg ttttaacact atctatccaa gaacagcgat aaaatttatc attgctagta
     5401 accactcgca caatatcgcc atttttaagc tcggttaaca aaggtacttt aatacgattt
     5461 acataagcac tttttgcatg aagccctact ttggtatgca cttcataagc aaaatcaaga
     5521 accgttgcac cacgaggcaa agtgaaaatt tctcccttag gagaataaac tgcgacatct
     5581 tcaacataaa gactatcttt agcatattca taaagctcaa tagcattata atcttctgca
     5641 ttttcaagat tgtttatact ttgcattgaa atatctgtaa gccaatcaag acgaggcgca
     5701 accacgctgc catcttcttt atatttccaa tgcgctgcta taccaaattc cgcaatttta
     5761 tgcatatcaa aagttcgaat ttgtgcctct ataatacttt tagcatcaaa aagtgtggta
     5821 tgtatagttt gataaccatt ttgtttaggc aaggctatat aatccttaaa acgcgaaacc
     5881 aagggattaa aatgtgtatg taaaattccc aaagctaagt aacaatcact tactttttca
     5941 accaaaattc ttaccccaag caaatcaaga acttcttcaa taccaatgcc ttttctttgc
     6001 attttaagat aaatagaata gctatgttta atgcgttttt gaatttcaaa actaccttgt
     6061 ctaaagccat tactcaaaaa taaaagttcg attttggaaa taaattcatt taaacctaat
     6121 tgcatttctt gattattgga attgatataa ttgtcaataa gcttatactc atctggcata
     6181 agatatttaa aactaagatc ttccaaataa ttttttatgc ttgaaatacc aagtctatgg
     6241 gctattgggg catatacaac taaagtttct tcgctgattc ttttttgctt atcttctctt
     6301 agaatatcaa gagtaagcat attatgcagc ctatcgcata acttcacaat caaaacccca
     6361 acatcttcaa tacttgctaa aagcatattt ctgaaagtca aggctgattt agttaaactt
     6421 tttttagatt ttgatgaaat gagattatct tctctaattt ctataatttt agtaagtcct
     6481 aaaacaagtt ttaaaacctc agaaccaaac tgctctctaa gttcttcttc agtgcagttt
     6541 gtatcttcaa tcacatcatg caataaagca gctaaaatat tgcttttatt ttcacttaaa
     6601 aatccaacca gtgttgctac taaaatagga tgtaccgcat aaggctctcc actttttcta
     6661 aactgccctt catggcaaaa tatacagtaa tctaccgctt tttcaagaat ggcatcatgg
     6721 ccacaaattt cgaaaagcaa agccttagca gcttctaaat ctttacaatt ttttacatta
     6781 tcgattaatt gttcaagcaa taattcttca tcgattggtt tcaactaaac cctctaaagt
     6841 gattttattt tctgcaattt catataaagc tatatctgca agtttatttt tatttttatc
     6901 aaagtctacc aaaggggttg ctccatttgc caattgttcc gctctttttg ctaccactaa
     6961 agaaaggcga tatctatcat tacccatttt ttccaaagct tttgccgcta cttcttctat
     7021 tcttttatcc ataattttct ccttaattat ttttaacggt tgaacaaagg ctagtatcac
     7081 cttgtatgat tttaagtaaa ttaccctctt caaacatatt acaaaccaca ataggaagtt
     7141 tgttatcttt agctaaagct atagctgtat catccatcac tttaatatta tcttgcatag
     7201 cctcatcata actcaaagta tttaaaaata ctgcatcatc aaattgtttt ggatctttat
     7261 cataaactcc attaactttt gtagctttta ttaccatatc tgcatcaatt tccacagctc
     7321 ttaaaatagc tgttgtatcc gtagtaaaat aagggtttcc agtacctgca gcaaaaacca
     7381 caacacgacc cttttctaag tgtctttgcg ctcttctcat aatataagtt tcacaaaatg
     7441 cttccatctg aatggcgctt tgaaccctaa cttcaagtcc agagctttcc aaagcttctt
     7501 gtatagcaat agcattgata accgtagcaa gcatccccat atgatctcca cttgtccttt
     7561 taatcaatcc gcccttagca gcacttactc cgcgaataat attaccaccg cctataacta
     7621 tgcctacttc tatttgattt tttataagtt ctttaatctc tgaagctatg aattttaaaa
     7681 tagaattttc tataccaaag ccattttcac ctgctaaagc ctctcctgaa aattttacta
     7741 aaactctttt tctctcttgc attatttctc cttatttaac ttgaaattat attttaaatt
     7801 ccattaaatt tagctaattt aagctaatga gttccaaagg attgatatga aaattttttt
     7861 gagttacttc aaaagtaaga tcatttttta ttctacccac tacggcacct tttttaatat
     7921 tcttaccaac tttaatatta ggagcaatct tatctaaatg tgcgtatatt gtatgtatgc
     7981 cattatcatg ttcaacaata acaactcgag ctagcatact agtatcttta gcaaaaacta
     8041 tttttccatc tagcacattt ttaacaactg catcgctttt attgcttctt aaaactacat
     8101 tctcgttaaa aattttaaga ttgtaaacag gatcaacata atttccaaat ttttgcttca
     8161 cagtaaaaga atccaatgga gctatggttt tttttcctgt gtaacgcttg actgaacttc
     8221 cttgatagct tgaacctaat tgtcttattt tttgattatt ttttactatt ttagtatcat
     8281 ttttgtttga atttgcatct tctttatcat taataatttt taattgattt aatgtttttc
     8341 taagctcttc ttgctgagct tgtaaatcat cgagtttttt tgcatatata gctcgatctg
     8401 ttttttgttt attaatttcg ctaatttgtt tttgttttaa actttgaagc ttggctaatt
     8461 gagcgttgta atccttaaga ctttcattga ttttcttaat ctgagcttgt ttatcatcaa
     8521 taagcctgct tactccctca taatctttag aaattttaaa aatttcttca tttaaaactt
     8581 tgtttaaact tcctaaaatt tcaaaagcca taaaactttc ttcactttca atatagcctt
     8641 gagggatagg taaatcataa gcaaaatctt tagccattaa agatataagc ttaccttcca
     8701 tatttgattt acttttaagc aaatcttcat tttggcttgt aagggtgttt aactcttgat
     8761 tttgagcctt agcacttgct tcaagcttag aagtttgtga atttaagctt tcaatttgca
     8821 aacttagatc tttcaaactt ttttcaccat ttaaaatatc gctagccaaa tcttcaagtt
     8881 ttttatttaa ctgttcttgt atgcgtttat tttcttctaa actttttgtt ttttcattta
     8941 tagcgtttgc taaacttata tcaacaaaca aaaaaaaaca aaaaaagata agaatatttt
     9001 ttctcatctt ttaaccttaa acataaccgt atttacacac aacaagcaaa taaacaaagt
     9061 agctaaaaaa attaaagtca aatgtaaaat aaaattaata ggtggaaaaa taatatctac
     9121 agcctttaaa ctttcttgga taatagaaag atcaaaaatt tgggtaaaaa aggcaagtaa
     9181 aataacaaaa gcaataaaac aatcaaccac aaccacctta taaagcataa aagatctaaa
     9241 ccaaaacgga gctccaaata aacacataat ttcaatacga tcggtatgtt cataaagcca
     9301 aattctcatc tgttttaaaa acaaaacaaa ggcaagtaaa ataatgataa acaaaaataa
     9361 ccaaaaaaca aatttcatca aaataagcaa agagtatatc ttatcatggg ttttggaaaa
     9421 agtttcaacc ttactaacac ctacaatatt taaaagttga tttttaatcg aatttagttc
     9481 attttgatcg ggtaaagaat ttaattttaa agtataaaat tttggcagag aatcttttaa
     9541 aactttcaaa ttcttttcag aaacatcatt tttcaaacga tcaattaaat ccttaggatc
     9601 taaagattca agtccagcaa aaaatggtac ttttgttttt actacattct gatcaagttc
     9661 agttttgctg acaactataa tattataatc tttattaaca agttcttcat aatgcttcaa
     9721 agttgcattt gtaatcaaaa taaattcaaa agcaaacatc ataaaaagta aaggtaaaat
     9781 taaagataaa tgtgttttaa aaaatttcat tcatttttcc attttctata ttaaaacgac
     9841 gataatccac tcttaaatta ctaggaattc tatgtgttac cactataaca caagttccta
     9901 aaagctctct agcagacttt aaaagagtcc atataatatc agaagaatac tcgtccaaat
     9961 ttcccgttgg ctcatcgcaa agcaaaagct ttggattatg agctaaagcc ctagccatag
    10021 cgacgcgttg ttgctcacca ccgctaagtt gattaggcaa tttatctgct ttaaaagtta
    10081 aatttacatg ctttaaaagc ttagtagctt gatcatggca tacttttttg ctataacctt
    10141 taatcattaa aggcaacata acattttttt caacactata ttcttgtaca agtttataat
    10201 cttgaaaaat aatccctatt ctttgacgta attttaaaag ttctaaattt ccaattttat
    10261 tcatcaaaga tccacatact tcaagtttac cagaaatagg ttctaaatct ccataaaaag
    10321 actttaaaag cgtactctta ccactcccac ttttacccgt aataaaaaca aaatcatcat
    10381 ccttaaaagc aaaactcgct tctttaataa ctagttcatc ataacctaaa gtaagtttat
    10441 ttgcttggat taaattaggc atcctttttc cttaatttcc ctttttaaat ttttaaatta
    10501 tgctttattt ttgcttaatt ttcaagaaaa attatatttt aaactgaact tttaaaattt
    10561 cttttaattc atttatcgct ttaatatttt cttgaatttt aaatggctct ttaaaagcaa
    10621 aatcaatcgt tttatcaaga tgcaaataac aatgttcagg cttattaaaa gctccaaaag
    10681 caacctttaa aagcaaattc tcatcttgtt tatagatgct ttcaaaatgc aagaaaaaat
    10741 catctttttt tatagtaata tttttaaagt tctgctctat ttttttcaaa tcctctttag
    10801 aaaattcaac cgatgagaga ttaaattcat ttaactcata gtttttacac tcttggttaa
    10861 aattccacac ccaaagatca tatatatttt tttcttgctt tttccatcta tcttcatatt
    10921 tgcttgaaat ttctaaattt tcattttttc taaggctaaa ttttggagca ggaaaagtca
    10981 aaaattgctc taaagtaaaa ttaaaatact caaaactatc tgttctaagc tcaaaacgac
    11041 cattttgaac taaaacccta gcacattctt tgcaaaaatc tttcccaata actcgcctat
    11101 gaggcttttt atcccaagga acagggaaat gtaaaaaaat cttttcaact gattttgatt
    11161 ttaatacact caataacaat ctcgcatcac tttggattag caaaatatta tttacatttt
    11221 gtgctttagc aagtttagcc acttgagtta aagctgggtt gtaaatttcc acccctaaaa
    11281 ttaaaacatt tggattttct tttgcttgat aaagcaaatg tcttcctgat ccaaagccta
    11341 tttctatata aattttacct tgaagtctag ataaaagctc atcaaaatta tcaacgataa
    11401 atggtgtttt ttcaattaaa gcattatttt taagtccaaa agcttcattg ataatatcct
    11461 cacaaaaacc ttctttaaag atttttaaag ccttttgcaa ataacctatt ttagaaggtt
    11521 ttgtatgttt atcgccttta atcacaaaac cattttgtgc ttttttaatc tgcagaaaaa
    11581 aactctcttc ttgaaccttt gtataaataa gactaacatt atcattctta gcaagccaaa
    11641 gaaattcaac atcatcctta ctataaggca gatttatttc tttgatcttt ttacttttaa
    11701 aatttggcac tactgagccg ccttaacttt gcttgaaggt tctgaacgaa gcccggctga
    11761 atcaatagca ataacttcat aactatattc cacccctggc aaagctttta catcttttaa
    11821 tcgcttttct ttaatgcctt taaaaactgc attttgctcc ccgccatagc gtcttacttc
    11881 atactcaaca gctctagtat cattatcact ccattctaaa tttatccctt cgcttgtact
    11941 ttgagccaaa ataatactag gagccaaagg gttgcctaaa gttttacctt ctacaccatc
    12001 ttttggcata ggactttcaa gaccatcttt atccaccatt gttactttat aatacttgct
    12061 tttacctgct ccttctacta tatcctcata agaattttta tcagtctttg ccaaaacact
    12121 aaaaggaagg aagcttgagc tcgtagaata aactttataa taagaaaaat cttcatacgt
    12181 aggagcatcc caagttaaaa tgattttact agaaccatct gtgctagcac ttaaatgctc
    12241 aacttgagga ggtaaagcct tgcttgtaga acttacaact tgacttgacc cactctttat
    12301 cccattaaaa ctcacagcaa taattctata acttgaattt tcattaggct ttaaatcact
    12361 atcgatgtat tcagcgttta aacgattttt tacttctgca atttttttaa attctttatc
    12421 atcacctttg gttctttcaa taatataaga atcaacccta aaatcaggat gcggacgcca
    12481 aataagttta atacgattag gcaaattagt cacagcttga acaaaaggaa cagcttcaag
    12541 tcttggagct gtgctcactt ctataacctt gccatcttct gaaatttgtc cttgctcatt
    12601 aaagcttttc atcatataac gatacttagt accaggctct aatttagtat ctacataatg
    12661 agtttgaaac ttatctttaa tagtgcctac aagtttaaaa tcaggatttt catcactaga
    12721 acgatacaaa taaaatcctt taatattttc attatataaa ggctcccatt caaaagcaat
    12781 attactcata tcactaagac tttttaaact ttcaaccttt ggcaagcttt catttacagc
    12841 aggctcttta cttgaagcta gcgaattcat ttgcgaaaca ctacaagcgc taagcaaaag
    12901 agttaaaaaa ctcaagtaaa aactcaagcg aaatcttttc atcattctct cctaaattaa
    12961 tttgttcaaa cataatattt ttaaaatctt ccatcaaagg tgctttaaca aaaatttgtt
    13021 ctttggtttt tggatggata aaatacaaaa aataagcatg taacattatc ctacaatcat
    13081 acttaccctt ataaccatac aaactatcac ctaaaatata gcgatttaaa ctagccaaat
    13141 gcgctctaat ttgatgagtt cttcctgtaa aaagcttagc agccatcaaa gttaaatttt
    13201 cagtttttac tacatttata aaagctgatt ttgcgttttt actgaattta ttttccttat
    13261 ctatggctat ttttttaata gcattagaag gcgaacgcat taaaaatttt tctactataa
    13321 ttttatcttc ttttagtggc aaatcaatta acgcaaggta aattcttccc atgcttttat
    13381 ctgcaagctg ttcacttaat ttttgatggg tgaaattatt tttcgctatt agtatagctc
    13441 cgcttgtatc tttatctaat ctatggacaa gaccagctct tatctctcct cctaaatttg
    13501 ataaagtata ttttttttct attaaccaat ccaccaaagt ggcattttta acgctacttg
    13561 ctccatgaac gactaaattt gaaggtttat ttaaaacaag caagtcttca tcttcgtata
    13621 acacatcaat atcaaaatcc acttcaaact gaggttttat ctcattgcaa agctttaaac
    13681 ttgcaataga aataatatca ccatttttaa gcttaaatga atttttatct tgaattttat
    13741 cattaacctg tacacaatct ttttctataa gtaaagcaac ttgattgcga ctttggttta
    13801 attttttagc caaaaataca tcaagccttg aattttcatc tactaaaaaa gtttgcattt
    13861 tttccttaga ggttttgata aatttaaaat tttagtttat aattatagct ttatattacc
    13921 aactgaaggc aaattttgtt tagattagat agaagaattt taactcattt tgactatata
    13981 cagcccattt tatttttacc cataattctt atttcatttt tcttaatctt tgaagctaat
    14041 ccttttttag cagaaaaaca gtttgtttat gcctgtgtgg gattgtttgc ttttatggtt
    14101 tttttcttct ttcccataag gaaatttatt tggattattc ctgttgctta ttggattaat
    14161 atttttttat tgctaagcgt agatattttt ggggttgaaa aattaggtgc taaaagatgg
    14221 cttgaaattc cttttactca ctttactata caaccttctg aaatttttaa acctagtttt
    14281 attttaatgc ttgcctatct tatttatcaa aatcctcctc caaaaaatgg atacaaactt
    14341 aaacaattca tcaaacttag cttttacatc atcttgcctt ttttgctaat tgcaaaagaa
    14401 cctgatttag gaagtgctat ggttttacta cttgttggtt ttggagtgct ttttatcatg
    14461 ggagttcatt ataaaatttg gttaagtatt gttatagcta taagtgttag ctctcctatt
    14521 atttatacac atcttttaaa accctaccaa aagcaaagaa ttcatgattt tatttcagaa
    14581 aaaccaagtt atcaagtagc ccaatcaatg atagctattg gaaatggtgg tttaaccgga
    14641 aaatctcaag atgaagctac gcaaactcat tttaaatttt tacctatttc aactagtgat
    14701 tttattttcg cttacatgat agaaagattt ggatttattg ggggattgac attaattata
    14761 ttttatattt tacttatttt tcatctactt agtttaaatt ataaacttaa agatgattat
    14821 tttgctagag ttgctattaa ttgtgttgca ttatttattt ttatttatgc ggcagtaaat
    14881 atttcaatga ctataggttt tgcaccagta gttgggatcc ctttgccttt ttttagttat
    14941 ggtggaagtt cttttactat ttttatgatt ttttttggaa ttttacagca tttaatcact
    15001 tttagatatt tttggacgga tataaaggct aaataaaata tttttaagca ttaataagat
    15061 ataattttat cttttaattc aacttaggcg gatttatagc tcagttggtt agagcaaccg
    15121 gctcataacc ggttggtcgc aggttcgagt cctgctaaat ccaccattac tcttttttat
    15181 caaatcccta ttttgcttta atatattaat caaatgccta taataaaatg ttttaaagct
    15241 tgttctatat cgttctttta tattccaaaa tgtgctataa tgttcttaaa aaagtgggtc
    15301 acttttccaa aaatgggtta caaaatgggc tactttttac accaaaatag acactaaaaa
    15361 agagagaaaa attaatggca aaaattaaca aacttaccga tagtttttta aaaagcatta
    15421 aatgcgaaag tgataaaaaa tttataaaat ttgctgatcc gagtttaaaa ggcttatatg
    15481 tttttattta tcctagtggt aaaaaattat ttaaaataag acaagcaaat gatacttata
    15541 taaaaatagg agagtatccg ttactttcct tagcagagct tagagaaatc gctttaaatg
    15601 cttttaagct aaaagcaaaa ggacaaaaca taaaaaacgc taaaagactt aaatttggcg
    15661 atatatatga tgaagtttta gaaaaatgta aggctgatgg attaagtcta aaagaaatac
    15721 aaagaggatt aaaatacaaa aatggcgttt ttaagaattt caaagatgta gatatagaaa
    15781 gcatcaagcg ttcacatgtc atcgaaacac ttaaaaccat agagcatcaa atccctacac
    15841 ttataaaagc taaaggctgg attaacaaaa tctttaaata tgctttgcaa cttgaaatcg
    15901 tagaaaataa ccctgtgaca agtattgata attccatagt ttttaaaaaa gcttcaaaag
    15961 taattcatca gccaactcta ctagaaaacg ataaaattaa agaatatata ttagccttaa
    16021 aaaattcaga tcttaaaaaa acacataaaa atctaatgct ttttaatctt ttgactgcac
    16081 aacgccccgg taatgttata aaagcaactt gggatgaaat tgatttaaaa aatgctatat
    16141 ggactattaa agctgaaaaa atgaaaatga gaaaagaaca tattatcact ttaaattctc
    16201 aagcgcttaa aattttaaaa gaacaaaaga aaatgaaagt caatgattat atatttgctg
    16261 gaagttcaaa aaatgggtgt aatagcgaga atatcacctg taatatcaat aaacgactag
    16321 gatataaagg tattcaaagt gcacatggct ttcgtgctat gtttagaagt ttagccaacg
    16381 aacatcaatt agatcatggt gtgagtatgg atatagccga gcagtgttta gcacacgagc
    16441 aaaaaaacgc cattttaaaa gcttataatc gtagtgaaaa tatagaatta aaaagaaagt
    16501 taatgcagtg gtggggagat tatatcgaaa aacttgcagg ggatttttaa atcaccttgc
    16561 aagtttgcaa ccatttatca atttcggctt tttcatattt aaaagtagaa cctattttaa
    16621 tccctttagg aaaattaaat ttattttgat ttactcgcat tctcattttg cgaattttta
    16681 gcggagtaaa tcccagatac tccgctactt cttttgttga taataatttt tctatcttac
    16741 caaattttgc catttcatac tcctttctct aaatcaaagc ctaattttgc aataattgct
    16801 ttttgctctt catagcttaa aaaattgctg attaaaatca aaacatcacc aaaacaaaag
    16861 cgattatagc tcgtgctttg ttctagcact ttaatttcta atgtatcact taaactctca
    16921 agcgaagctg ttattttcca atttttatta atagctttta acatctcatc gtttgcattt
    16981 tgattaaaag cattgtcgtt tcttaaaagc aacatttctt ttatcgtttg ctttaacatt
    17041 tcttgcgtat tttctagctc tttttctaat gctattttag cttttatgta ttctttgaat
    17101 tctttcattt tttatccttt ctaacttaag caaataagct tctttctatg tgtttaaaca
    17161 taatttcatt agcactttta aaaaagtctt ttttaatctc aaagccataa gctttgcggt
    17221 ttaaatttgt agctgctaaa agagtgctac cacttccagc acatggatct ataacaacat
    17281 cacctgcatc tgtaaaaata gtgattaatc tttctagtaa tttaacaggc ttttgtgtgg
    17341 gatgtacttt aggaatacct tcatcttttt gccaatccat gcagttataa atcatctttc
    17401 catcattgtt aaattttgga agtttttcac gatataagat taaagcatat tcacaatttc
    17461 caactatttt catatttgct tttaaaactt gagatgagct ttgttttcta aaaaccaaat
    17521 ttatataatg attaaagcca tattttttag ctacttcaat taacattgtt tgttgttcaa
    17581 aagagcaaaa aacaatcatg caaggacttt taccgcattc tttaggttct tttataagca
    17641 tttttgagca aaagtgcata aattcgctaa ctctaaaatc attatctgta tcaaaaaacg
    17701 ccttgtttgc ttttttgctt tctccatttt tattatcccc atttatatac cattcaggag
    17761 atgaagcata agcattgttg cctaaattat aaggaatatc agctattaca agctgtgctt
    17821 ttggtatatt atatctttta aaattttgaa agtggtcgtt ataaagctgt gggtgaaaca
    17881 tcatcacttc ctttttgatt aaataaatta ggctctttta aaaaggctat tttttccatt
    17941 atttcattaa attcgctctg atagtctttg atattctgat ttaatatgct tctttcatct
    18001 ttaactcttt gtatagatct atgaattgct aaagctcttt tggttaaaac ttctatctct
    18061 tggtttaact caccttgatt taattccttt aactgctcta attgctgatt agtatttttt
    18121 ttcatttttt atccttttaa ttatattttc aagttttaaa agtccgcgtt ctaaaacttc
    18181 ttgttcttct ttacttcttg cttttagctc atttattcct tttgctgcaa tagaataaaa
    18241 caccaaatca attcgtttgt aaaactctaa tttctttttg tattcttctc ttagtctttg
    18301 taaaatgttt tctttttctt tttcaaataa agctaaaaca aaagaatctg aaaaataaaa
    18361 acaaagtctt ctttctttat tttcccctac aatctttgca tctttaaaaa agtatttaag
    18421 atcattattt aaaacaagtt ttgctaaatc gtaagcttct aattctcttg taatattcat
    18481 ttaacacctc attgtataag ttttattaaa ttctcttgtg atcttttcta ctttaaagct
    18541 agtttttaat ttattatcac attcaggaca aaagccatct aaactcacgc tttttacatc
    18601 gcctataatt tcatcaagac ctttaaaaaa tttagaattt ggcacaaatt ctaagttgca
    18661 ttttgaacat tttattgtcc ctttaaaaat aaaatttact ttcatattct ctcctaactt
    18721 gccaaagcgt aaggcttaaa tatcttagcc caacgtggat tgtttaaata ctttgtttgc
    18781 tcaagtatca ttctcatatt aaaatgccaa attcctatca ttcttaaata atcttgcata
    18841 agatctaatg catcattgat atcattttct attctatcta agaacttatc ctttatcttc
    18901 aatgtaagct ctaatctttt ccatcgcaca aattcccttt taatgttttc tttgtgatag
    18961 tacttttgtt tttcgtattt atcataaagt aaaatgcgtt ctaatttata gtatttactt
    19021 tgaggattgt tgatatacat acttgtttta taagtatgaa aatcgccaaa gattttaagt
    19081 ttgctaaacc tttcttggtg tttaaattct cttggtttag atactgctag atcatcatca
    19141 aaatcacaag caatatccac actataagct ttaaaccttt ttatcatttt gcttaaaatt
    19201 ttccacactt cagcttctat ttgtttacta ggctgataaa gcccattaaa ttgcacctct
    19261 atgtagtaat cttttgcttt tttattcttt ttagaaagct caaagcaagc cttagaatta
    19321 tctaatataa tgatagtatt tgaaaggctt ttatttctag gttttatatt gatataacgc
    19381 attttaaaag gataaaattt atcattggtt tttatgcctt tgaatttgtc ttttgcaaat
    19441 tcatcaatgc ttttatttct tgttgtgctt cgcatttttt caaaaagccc ccatctttta
    19501 aggtatttgt aaaaggtttt tttgttgata acgaaacgga agctgtcgta tcctgtgcta
    19561 tgatttgttt gcataaaata tccttttcaa aacctttttt cattaaaaag ccattgctac
    19621 ttatctttac aagtgcatag ccacgcattg ctaaactttc tattaccttt gctctttgtg
    19681 cttttttaaa tgcatcatta tctttttgta tgggtttaaa actcattttt ttcctttttt
    19741 agacattaaa tgagtgttta gggtttatta aaatgtccta aacactgtta aactggtgat
    19801 ttatttaata gttgaaattt tttcttcgtt tttctaattt aaatactaat atatcacaag
    19861 cttttttact tagctcatca ttagtgcata aaattttagt tttaagttct cgcattaaac
    19921 tttccaccca aagaaaaagc tcatcatctc taaaaacaaa aagctgattt ttggcaaatt
    19981 ctgcttttag tttctcgtat ttttcccctt gtatattttt aagcttaaaa accttttctt
    20041 tagtcttttt gtgcttttgt ttttcgatta aaagctgata ttttaaagct tttatttcgt
    20101 tttctaggta tggtttgtta ctcattttta agctccttaa gttctttttc aagcctataa
    20161 acttttgccg ataaaacaca taataaagtc gctaatacta aaactataat ttctaaaatc
    20221 atttttaact ccttttttga tataatagaa aaggtaaaag atgataaggg ctttcgccct
    20281 ttgccttaat gctttcttgc gttgataatg gctgttatca agcagattaa agcagtgatt
    20341 aactcgagca catcactagc gttcatcttt tactcctttc ttttatttca aaagtaattt
    20401 atctttactt ttgataacac aattataaca taataattac taattgtcaa ggttataata
    20461 atttattttt atttttgtag ataaagaagt aatttaaatt tactttgtgg attaattttc
    20521 gttaatccac gctttaaagt cttttttgat agcttctgct ttttctaatt ttgcttctag
    20581 ttcaaaaatt tttttaagca tattaatagc gtgtgccatt tgaaaactta ttttttcagt
    20641 agaaatggca ttttttactg caccttcacc aaaacctatt aactcggcta actctttata
    20701 agttaagcct tgctctttac aaaattgttt taattcttca cttgtcattt ttccctttct
    20761 tttattctaa agatatttta tcttttatgt taaaaattct atataaaatg attttatttt
    20821 tatcgttttt ataatactct aaatctacta aaaaattaaa tccataagga tttttcaaaa
    20881 cttcttcggc tattttctca tcactaaaac taacatcaac cgcataagga cttaaagcat
    20941 cgcactttgc cttatgtttt gttttattgt ctattttatt tgtagtttta tacatcgtta
    21001 tcaaagcatt ttcatgtatc ttttgatatt caatttcctt tttttcgcaa atgtaattag
    21061 cattttcata aataagctca gcttcatcac tatttattct caaaagttct tcacctttat
    21121 gattgataaa aaaagtattt tgatttatag taacgggtgc aaatatattt tttaaattat
    21181 tggcattata cttagtaaaa tgcggatttt cttctatttc ttctatactt tttgatttga
    21241 tatttttaaa agatatgata agttctataa attcatttaa tgcttgaata ggtgcaataa
    21301 taggcaaaac ttctcctgct atttcaaaaa ccaaagaata tatatcacta ccagtttcaa
    21361 ctttttctaa aaaaatttta ctttgtgtta taccgtgctc ttttgatata aaactatcca
    21421 ttaatttttg aaaacttaac aaagaattag ccattatccc aagttctatg ttttcttcat
    21481 ggataatttt tattttaaaa ttaacaatat tttctttctc ttctgtcatt aattctcctt
    21541 ttaaattaaa aaatcttatt agccaaagaa aaaacaaaac ctacgctttg ctttatagct
    21601 tctttatcag ctaaatctat gctatctttt agcttttcgc ctaaagtctt attgctttgc
    21661 attatattac ctcttttctt tttcctcaca aacaaaataa acttttacat tcttattttt
    21721 attgattaaa agaatttgtt cgtgtaaatt ttcaaaagga ctttctaaat tgtcataaaa
    21781 tttcaatcca cacacaggac aatttttaat actattgtga gtatctataa tgatttgcgt
    21841 ttcacaattt ttgcactcta gtttaaactt ttttatcttg gcgatttctt gttccatcac
    21901 attccttttt acaaacaaaa taaaattctg catttttatt tttgctaaca cttttgaaca
    21961 attcagttaa aatttcaaag agattatatc ctaaattttc atctataaac tttattccac
    22021 attgcggaca agttttaata acattacc
//
LOCUS       DARBAR010000014        21713 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.014, whole genome shotgun sequence.
ACCESSION   DARBAR010000014 DARBAR010000000
VERSION     DARBAR010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21713
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.014"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..795)
                     /locus_tag="SB815_000387"
     CDS             complement(<1..795)
                     /locus_tag="SB815_000387"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEG0906157.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVNAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNVLSSIDFFQQELERCKQMIQLDKNDELREWM"
     gene            872..3091
                     /gene="bamA"
                     /locus_tag="SB815_000388"
     CDS             872..3091
                     /gene="bamA"
                     /locus_tag="SB815_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEG0906158.1"
                     /translation="MKKHLISICALVAMANAATIKDIKFIGLNHLSNTSAINIAGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVTITGIASNDRK
                     QVESILGIKRGTLLDEGNIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NTQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLVNPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITIGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNDTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEIGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            3091..3813
                     /locus_tag="SB815_000389"
     CDS             3091..3813
                     /locus_tag="SB815_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HEG0906159.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFNNKQAFKSNLSDPKYSPLTPNLFSKIGIVEKISLYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            3822..4664
                     /locus_tag="SB815_000390"
     CDS             3822..4664
                     /locus_tag="SB815_000390"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEG0906160.1"
                     /translation="MNFADIFSKIRRQQPSVKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTSLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            4666..5115
                     /locus_tag="SB815_000391"
     CDS             4666..5115
                     /locus_tag="SB815_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEG0906161.1"
                     /translation="MQVNIFCIQKSDEFKTCSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            5127..5489
                     /gene="dksA"
                     /locus_tag="SB815_000392"
     CDS             5127..5489
                     /gene="dksA"
                     /locus_tag="SB815_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HEG0906162.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            5479..6465
                     /locus_tag="SB815_000393"
     CDS             5479..6465
                     /locus_tag="SB815_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906163.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            6462..7388
                     /locus_tag="SB815_000394"
     CDS             6462..7388
                     /locus_tag="SB815_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEG0906164.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFISIHGRTRKQLYSGKADYGSIASAKASVKIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASTFRDTVNRIDNVEEMRKKIEEFFSLT"
     gene            complement(7413..8102)
                     /locus_tag="SB815_000395"
     CDS             complement(7413..8102)
                     /locus_tag="SB815_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906165.1"
                     /translation="MIVFPLSSFNRYFGNNPLQTLTKIRDESIENGNPELTKKQREEL
                     GNDLIDLYKISKKFSDKIELVEGSIEDKLRNNELPESEVKNLFQWMDENAKHPRWMHI
                     DGVSYDEAYVKIFHTSKSIDEFKEKYLELQKKYFVDFNNIDSSQKKLQETSEEDKKAF
                     KPIQVESKSETYKDDNKMNELLRKLLETKFGTSDELEILFGMNFSNDNAGEFNKILSQ
                     NTSAKIIDIKA"
     gene            complement(8226..8633)
                     /gene="ybeY"
                     /locus_tag="SB815_000396"
     CDS             complement(8226..8633)
                     /gene="ybeY"
                     /locus_tag="SB815_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEG0906166.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLED"
     gene            complement(8630..9244)
                     /gene="recO"
                     /locus_tag="SB815_000397"
     CDS             complement(8630..9244)
                     /gene="recO"
                     /locus_tag="SB815_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HEG0906167.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            complement(9244..9765)
                     /locus_tag="SB815_000398"
     CDS             complement(9244..9765)
                     /locus_tag="SB815_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HEG0906168.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            complement(9770..10525)
                     /locus_tag="SB815_000399"
     CDS             complement(9770..10525)
                     /locus_tag="SB815_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HEG0906169.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFANLHTESFWLQKA"
     gene            complement(10522..11211)
                     /gene="pfs"
                     /locus_tag="SB815_000400"
     CDS             complement(10522..11211)
                     /gene="pfs"
                     /locus_tag="SB815_000400"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HEG0906170.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            complement(11208..12128)
                     /gene="fabD"
                     /locus_tag="SB815_000401"
     CDS             complement(11208..12128)
                     /gene="fabD"
                     /locus_tag="SB815_000401"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEG0906171.1"
                     /translation="MNAAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNG
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVISNANAKIYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVV"
     gene            complement(12128..12697)
                     /locus_tag="SB815_000402"
     CDS             complement(12128..12697)
                     /locus_tag="SB815_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG0906172.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            complement(12712..13659)
                     /locus_tag="SB815_000403"
     CDS             complement(12712..13659)
                     /locus_tag="SB815_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG0906173.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            complement(13663..14160)
                     /gene="pal"
                     /locus_tag="SB815_000404"
     CDS             complement(13663..14160)
                     /gene="pal"
                     /locus_tag="SB815_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HEG0906174.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            complement(14237..15445)
                     /gene="tolB"
                     /locus_tag="SB815_000405"
     CDS             complement(14237..15445)
                     /gene="tolB"
                     /locus_tag="SB815_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HEG0906175.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYIFEYTLNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVNVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            complement(15455..16234)
                     /locus_tag="SB815_000406"
     CDS             complement(15455..16234)
                     /locus_tag="SB815_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HEG0906176.1"
                     /translation="MKNYGLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGISSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEVKVKND"
     gene            complement(16237..16626)
                     /locus_tag="SB815_000407"
     CDS             complement(16237..16626)
                     /locus_tag="SB815_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HEG0906177.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSTPTVKSLIISINVKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            complement(16635..17189)
                     /locus_tag="SB815_000408"
     CDS             complement(16635..17189)
                     /locus_tag="SB815_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG0906178.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            complement(17189..17578)
                     /locus_tag="SB815_000409"
     CDS             complement(17189..17578)
                     /locus_tag="SB815_000409"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEG0906179.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            complement(17582..18979)
                     /gene="atpD"
                     /locus_tag="SB815_000410"
     CDS             complement(17582..18979)
                     /gene="atpD"
                     /locus_tag="SB815_000410"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEG0906180.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            complement(19005..19889)
                     /locus_tag="SB815_000411"
     CDS             complement(19005..19889)
                     /locus_tag="SB815_000411"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEG0906181.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLKDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            complement(19898..21403)
                     /gene="atpA"
                     /locus_tag="SB815_000412"
     CDS             complement(19898..21403)
                     /gene="atpA"
                     /locus_tag="SB815_000412"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEG0906182.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            complement(21417..>21713)
                     /locus_tag="SB815_000413"
     CDS             complement(21417..>21713)
                     /locus_tag="SB815_000413"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEG0906183.1"
                     /translation="ENSRLECIPQIVKELERQKAFKENIFVGIVYSKEKLSQENLKDL
                     EVKLNKKFDANIKLNNKISQDDSVKIELEELGYELSFSMKALQNKLNEYILKII"
BASE COUNT         7425 a         3788 c         2955 g         7545 t
ORIGIN      
        1 catccattct cttaattcat catttttgtc taattgtatc atttgtttac atctctctaa
       61 ttcttgttga aaaaaatcaa tagaacttaa tacgttatct ttattttgta aaaaaatact
      121 ttcccacatt tgtggcgatg atttggcaat tctgctcata cctttaaaag atcctccagc
      181 taaatgaaca atatttcttt tatcctcttc tttcattaca aaatttgcca aagaaaaact
      241 tataacatga ggcaaatgag aaataatagc agcatgatga tcatgggctt tactatccat
      301 aaaaacaatt ttcatcccta aatgagaaaa aatttccact gctcgttttt gatgcaagtc
      361 atcagctatt tcactatcac aaagaacaca aactgcatct ttataaagct ctttaaaagc
      421 cgcttttgga cctgaatttt cagttcctgt cataggatga gcaaaaagag tttgtttgat
      481 taaattctta ggcaaacttt ctataatttt tctttttgta cttccaagct ctataattgt
      541 tacattagaa ggcaaatcaa ctaacttttg caaaatttct ataatagcat taacaggagt
      601 tgcgacaaaa atcatatcac ataaagctaa atctttaaat tctataagct catgaataag
      661 acctaattgc agggcatctt tttcattttc tttgcttaaa tccataccat aaacacaaga
      721 aataagctta ttttctttca aacaaagccc taaagatcca cccataagcc caagccctat
      781 aattgctatt ttcatacttt ctaccttagt ttttttgtta aatttttttt gctattatac
      841 agcttttaat aaagctttag gtaaaaaatc aatgaaaaaa catcttatta gtatttgtgc
      901 tttagttgct atggccaatg cagcaaccat taaagatatt aaatttatcg gattaaatca
      961 tttatcgaac acaagcgcta taaatatcgc ggggcttaaa ataggcgagg aaataaatcc
     1021 tgcaaaaatc aacactgcta ttcttaatct ttataaacaa aattatttcg aaaatattgc
     1081 agtagaaaac aacaatggaa ttttggaaat tatagttact gaaaaaccaa ctatagcaaa
     1141 ggttactatc acaggtatag cttcaaatga tagaaaacaa gttgaaagta ttttagggat
     1201 taaaagaggt acactacttg atgaaggaaa tataaaagaa gctattgaac gcattaaagc
     1261 ttattatgaa gcaaaaagtt attttgatac tattgtagaa tacaaaaaaa agactttaga
     1321 aaatactgat ggactagagc ttgaatttat agtaaatcgt ggtgaaaata tcattattga
     1381 taatgttcat ttaagtggag caaagaaatt ttcatattct gatatagaac ctgctgttgt
     1441 taacaaagaa aaagaattta tgggatggat gtggggacgc aatgatggaa aattaaaagt
     1501 ttttgaactt agtaacgata gttcaagaat tgctgatgaa tatatgaaaa aaggatattt
     1561 agatgttcaa gtatcctccc cttatcttaa aacctacaca gatacttatc aagcaaattt
     1621 gacttatttt atcaaagaag gaaagcctta taaaattaaa agtataagca tagaaaatcc
     1681 tttatttgat gataagcaaa atacacaaac cgtaaaagat ttaagatcaa gcgctggcaa
     1741 aactatcaat atcgaagaca ttagaaaaga tgttaaaacc atagaaacac aaagtgctga
     1801 tttgggttat gcgtttgtag aagtctatcc tgatattcaa aaaaatgatc aaactcaaga
     1861 agccaccgtt gtatttaaag taatccctca cgataaagtt tatataagaa atgttattat
     1921 ttcaggaaat tcacgcaccg tagatcgcgt catacgccga gaattatata taacagaagg
     1981 taatttatac aatagaacag acttaagcga gtcaaaaaat gctttaaaaa gaacttctta
     2041 ttttgacgat gtaaatatca aagaagaaaa agttgatgat acacatattg atttgattgt
     2101 tgatgttaaa gaagcttcta caggagctat ttctggaggc attggctatg gatcaagcga
     2161 tggtattttg cttaacgctt ctttatcgga tacaaatatc tttggttcag gaataaaaag
     2221 ctctgtaagc gtagataaaa gcgatgatac tttatcggga aggattagtc tcgtaaatcc
     2281 acgcgttctt gatagtcaat atagtctggg tggaacactt tattcaaatg actatgaatg
     2341 ggataattat tcagaaaaaa attacggctt tgatataaca attggacgcc aatttgcaag
     2401 atactataat gtaagcttaa cttataatct tgaacaaagc gatatatatc acttaagtcc
     2461 aactctttta agaacaggat atgaacttgg caaaagtatt aaaagctcta taactccagc
     2521 aatcaccttt aacgatacag atgattatta tctgccacga tcaggtatta ttgcttcaac
     2581 tagtttagaa tacgctggac ttggcggaga tcaagaattt atttcatcaa gctctaaatt
     2641 taacttttat caaggtttgc aagactatat aggatatgat cttatttatc gctataaagc
     2701 gagtttttat aaagtatggg atgaaggtta tttaccaatt aaccaaagaa tttatttagg
     2761 tggtattaga tcgatacgcg gttttgaaag cagaacagta agtcctaaaa atcaatgggg
     2821 agatgaaata ggcggaacca tagcttttgc caattccgta gaacttagtt ttcctttgat
     2881 tgatagaatc aaacttcgtg gtagcgtgtt ttttgattat ggtatgatag ggcgtaaaaa
     2941 tttagatgaa ataaaaagaa tgagtacagg tataggcatt gaatggatta cacctattgg
     3001 acctttacaa cttgtatttg ccaaacctct taatgataaa aaaggtgatg atactaatag
     3061 ttttgaattt aatcttggaa cacgctttta atgaaagaat ttttagatgc ttgcttaaat
     3121 gcaaatttgc aaatacgcaa gtatctaaac aatatcccac aaaatgatct taaactttgc
     3181 tctaaattag gctatgataa aaatcaaggc tatgagcttg acttaaaatg tgaacaaatt
     3241 ttcataaaat atcttagttg ttttggacaa attttttctg aagaaagcgg attgatcgga
     3301 aaagctagcc caaaacaaat gattcttgat cctttggatg gaagttcaaa ttttgtttct
     3361 aaaataccat tttatggaac ttctatagct cttatggaaa aagatcaggc aaaaagtgct
     3421 tttgtttgca atcttgtcag tcaagaaatt tttgctttta ataacaaaca agcttttaaa
     3481 tccaatcttt ccgatccaaa atactcaccc ttaacaccta atctattttc taaaataggt
     3541 atagttgaaa aaatttcact ttatccagaa cttctcgatt ttttaacaaa aaatcaatta
     3601 aaatttcgct ctttgggtgc aacagcctta agtcttgctt atgcttcgta ttttagtttt
     3661 gtattaattc ttggaaaaac acgaattttt gatacagcag ctgctttagc aattcatcaa
     3721 aatttatata tagaaaaaaa tgaaaatttc cttctcctaa gccaagacaa aaaaattttt
     3781 gatataatct tagaattttt aaaaaataat taggtgaata tatgaatttt gcagatattt
     3841 tttcaaaaat aagaagacaa caacctagcg ttaaagaagc gccaaatcac tgggtaaagt
     3901 gccaaagttg tcatgctttg atgtattata aagaaataga atcttgtttt aatgtttgtc
     3961 ctaaatgcaa ttatcacatg agaatttcag ctgatgaacg tattaaactt ttaagcgatg
     4021 aaggcagttt tattgagtat gatgcaaatt tagaagctat agatccttta aaatttgttg
     4081 atagcaaatc ctataaaaaa cgccttagcg aaggtgaaag taaaacaggt agaaaaagtt
     4141 ctgtcatcag tggagaatgt gaaatcaatg gtttaaaaac ccaacttgtt gtatttgatt
     4201 tttcttttat gggcggatct ttaggttctg ttgaaggaga aaaaattgtt agagctatac
     4261 aaagagctat cacaagcaaa acttctcttg tcatcgtaag tgcaagcggt ggagctagaa
     4321 tgcaagaaag tacttattct ttgatgcaaa tgagcaaaac tagtgctgca cttaaacttc
     4381 ttagcaaaga aaaacttcct tatattagca ttttaaccga tcctactatg ggtggagtaa
     4441 gtgcttcttt tgcttggctt ggagatttaa tcatcgctga acctgaagct ttagtaggtt
     4501 ttgctggcgc aagagttatt aaacaaacta taggagcaga tttacctgaa ggttttcaaa
     4561 aagcagagtt cttgttagaa catggactta tagatgccat agttgaaaga ggagaacaaa
     4621 aacaatatct tagcgatgta ctaaaatttt ttagtggaaa ataatttgca agttaatatc
     4681 ttttgtattc aaaaaagtga tgaatttaaa acttgtagtg agaaatactc taaactcatc
     4741 tccaaatacg ccactttaaa agaaataaat gtttttaata aaaaaatagc cttagctcaa
     4801 aatttaaatg ccatagaagc aaaaaaaagc tatgaagaag cttttatgcc ttataaaaaa
     4861 ggctattgta tcgctcttga tgaaaaaggg aaagatctta caagtataga atttgcaaaa
     4921 ctcatccaag ataaaaatga attaagtttt tttataggag gtgcttatgg tttaagagaa
     4981 gaatttaatc aaagtttgga ttttagacta tcattaagca aacttacttt agcacatcaa
     5041 tttgttaaaa ccttactttt agaacaaatt tatcgtgcat tttgcatcaa caacaatcac
     5101 ccttatcaca aatagaaagt tttaaaatga aaaaaaatga aatacaaaat ttcaaaaata
     5161 ttttagaaga aagaaaaaaa gccatcttag aaaatttgca aagcaattca aatgaaatcg
     5221 aagctcttca caatagcgtc ccaagcgata gtgtagattt ttctgtcata gaaacaggct
     5281 ctcaaattga ctttgctatc agcaccaatc tcaaagaaga acttatagaa atcgaagatt
     5341 ctttagataa aatcaaaaac ggcacttatg gaatttgcga atcttgcgat gatgaaatcg
     5401 actctcaaag actaaaagtc aaacctcacg caagatattg tatcacttgc cgtcaaattg
     5461 cagaacaagg aaaaaaacat gaaaattaaa ctcttcttac ttgcaagttt tatttatata
     5521 gcacttattt ttgcctttgc ttggcatcta gaactaggaa gctatactct aaatatcagc
     5581 acttatacct ttgaactacc tattatgata tggcttgtta ttcctttatt tatttatatg
     5641 attttagccg ttttacacat agcattttat ggatttttgc gttatttaaa atttaagcat
     5701 ttttttaaag atgcagctaa atttgaagct tatactcaag atttactcct tgaaaaagat
     5761 cttaaaacca cttttcaaac aaaagaattt agatctgtag cacaactttt taaaaccata
     5821 aaaacacatg aaaaaattcc acactcaaat aaaatcaatg aaattttaga tcttattgat
     5881 ggtttaaata aaaacgaatt ttttaacctt agcaaattta aactcgaaaa taacaatgtt
     5941 ttatatttgc aaaatgaaaa aaatcatctc aaaaatgatg caaattatgc ctataacaaa
     6001 cttaaaaacc ttaatgaaat caaagatgaa tttgaagaaa ttgcttttaa cactcttata
     6061 gaaaaagcta gttatgagca aattaaaaat gtaaaaatcc ctaaaaagcc ttctgaagtt
     6121 ctcacactta tcaagcgttt taaagaagga aatttagaac ttagtgtagc agaatatgaa
     6181 gttttacttt cacacaacat attaagcgaa aaagactatc ttaacgcagc aaaactaagt
     6241 actaaacttt taaatcctga tgctatttta ggaattttta acaaaattaa aaatgaaaaa
     6301 agcgaagctt taagagcata tttatatctt ttggctgaat ttggactttt agatgagtta
     6361 agagaacaaa ttcacaatga tgataaaaaa tttaatgatt ttaaagcctt tttagccttg
     6421 cgtgaaaaaa atatcaaaat cgatctaaat caactcatac aatgatagat tttagcaaaa
     6481 aacccctgtt tttagcccct atggcaggtt tttcagatct gccttttcgt aatgtagtaa
     6541 aaaaatttgg tgctgatatt accataagtg aaatgataag ttctaatgcc ttagtttatg
     6601 aaagttctaa aactttacat atgctagaaa gagctgaatt agaaaatcct tatatagtcc
     6661 aaattgcagg tggagataaa gaagtgctaa aaaaagcagt gcaaatgcta aatgaaatgg
     6721 attttgtaga tgggatcgat tttaattgcg gttgccctgt aaataaagtt gttaaacaat
     6781 gtgctggcag tgctttgcta gaaaatttag agctttttaa aaatcttgta ggagtgatta
     6841 aagaaaacaa taaaaaaagc cttacaagtg tgaaatttcg actaggattt aatgaaaaat
     6901 atcctgaaaa aatggctaaa atttgtgaaa gcttgggggt ggattttata agtatccacg
     6961 gacgcacaag aaaacagctt tatagcggaa aagccgatta tggatccatt gctagtgcta
     7021 aagcgagcgt gaaaattcct gtgattgcaa atggcgatat taacgcacaa aacgctaaag
     7081 aagtttataa aatcacaaaa tgtgatggac tcatgatagg gcgtgcaagc gtaggaaatc
     7141 cttggatatt ttatgaaatc aaaagcggta aaagtgtaga tgaaaaactc aaaaaagaaa
     7201 tcatactcac tcattttgat gaaatgataa aacactacaa agatcaaggc gtaagtatat
     7261 ttcgcaagca tttacacgag tattctaaag ggcataaaga cgcttcaacc tttagagata
     7321 ccgttaatcg tatcgacaat gtcgaagaaa tgcgaaaaaa aatagaagaa ttttttagtt
     7381 taacttgatt gatttttata atttaaaaaa tcttaagcct taatatctat aatttttgct
     7441 gaagtgtttt gagaaagaat tttattaaat tcccctgcat tatcattgct aaaattcata
     7501 ccaaaaagaa tttctagctc atcgcttgtg ccaaatttag tttctagtag ttttcttaaa
     7561 agctcattca ttttattatc atctttgtag gtttcgcttt tactttctac ttgtataggt
     7621 ttgaaagctt ttttgtcttc ttctgaagtt tcttgcagtt ttttctgcga tgaatcaata
     7681 ttgttaaaat caacaaaata ttttttttga agctcaagat atttttcttt aaattcatct
     7741 atacttttgc ttgtgtgaaa aattttaaca taagcttcat cataactcac gccatcaata
     7801 tgcatccaac gagggtgttt agcattttca tccatccatt gaaataaatt tttaacttct
     7861 gattctggta attcattgtt tctaagctta tcttctattg aaccctcgac taattctatt
     7921 ttatcgctga attttttaga aatcttatac aaatctatca aatcattacc taattcttct
     7981 ctttgttttt ttgtaagctc gggatttcca ttttcaatac tttcatctct tattttggta
     8041 agtgtttgca aaggattgtt tccaaaatat ctattaaaag agcttagagg aaatactatc
     8101 atctttatca ccttggaata aattttattc taaagcaaat cggcaaaaat gatttttttt
     8161 aatattttta ctcatatatt taaaatataa agcgcaagtc ttctagccct tgaaaaaaat
     8221 cttacttaat cttccaaagt ccttacaatc aaacttttag gtaaattaaa atgctctata
     8281 agttctttct ctttttctct catttctcca ttatcatttt catgatcaaa acctaacaaa
     8341 tgaagcatag cgtggataaa aagcaagctt atttcttctt catagctatg ccctaactct
     8401 ttagcctttt cttttgccaa atccacattg atcacaacag aacccaaagg caaactctca
     8461 tcgatatttt caagtggaaa agaaagtaca tcagtggttt tatcttgttt tctttgctct
     8521 aagttaattt cttgcatttc tttactatcc acaaagacaa gctccacatc tttaggactt
     8581 aaaaaacttg ctatagattc taaaaaatca catttttcat cacttaatat cataaacctt
     8641 ccttaatcaa atgatataaa ttttctattt cttcatcatc aaaaatcgca caatttttac
     8701 tactataaaa ttgttttagt tttttctctt caaactcaaa tcctaaagca cattgagaat
     8761 gcgaaggtaa aaaagccctt agcaatgtaa tggaattttg aattttctca tcacaggcaa
     8821 aacaaaaaaa atctttatgc aatcttcctt caaattccaa aatttttaaa taagcatcaa
     8881 caataacacg ctttggattt tgtttttcaa accttttcac acactcatca agtaaatcaa
     8941 aataaaaact atcaagctct tccacatctt ttaaatgcct atataaaaga cggataaatt
     9001 cttgccaaat aagcatttta tccctttgca taatccataa aaatcccaaa tgcaatacat
     9061 ctttaagtct tggtaaaaaa ctaggatttt cttctaaagc aaagtcgatt ttatagccgc
     9121 ttaaaatact agaatgtcta agtccataaa aacgataagc cttaataagc attttaggac
     9181 ttaaaatata aacgatcaaa tcctcatctt taactttttg agtatgaagt ataaagcctt
     9241 gcattaaaca atttcaatac cataagccct aagtatatca aaagcggatt tttctaaatt
     9301 ttcatcaaaa cttgcactta aattttggtg taaaattatc cttgcattag gcttagcacc
     9361 aaaagctaaa atgatattac aaaacacaca aatatgagaa acaagccctg caaaatgaag
     9421 ttcttcataa tcactttttt gtatgaaatt agctaattct aagctaccaa aagtattttt
     9481 ataaaaaatt ttatgagctt tttgtaaaaa aggttcaaat tcctttggca tttgccaacc
     9541 caaactctct ttaatgcaat gttttacagg taaatttaaa ccttctttac tttgtagata
     9601 atgctcatca tgcgtatcat aggttaaaag caaatgcgtg ttattaaaat cgatttgatt
     9661 taaggcttta agaatatttt ctttgatttt taaagcctta tcaaaaccta aacttccatc
     9721 aataaaatca ttttgataat ccactaaaac aaaagctttt ttcatgcttt tatgcctttt
     9781 gaagccaaaa actctccgtg tgtaaattgg caaaagcggt ttttaaactt gtaaaaagct
     9841 taggatgatc tttttctaaa tttgctaaaa gctgtttagc ttcttctcta gcgtgtggaa
     9901 attttacatt tttttcactg agtttcatac caggacaaaa ttcatttcct atcacgctaa
     9961 gttcattttg cgtagcatta tctctaagct gtctttcacg cacaaaaatc aaagggcgta
    10021 tcacagttat accgcgtttg ctttgataaa taggtgctaa ggttcttaaa gctccattat
    10081 gaataaaatt cataaaaaag ctttctgctg catcatctaa atgatgagct atagcaagct
    10141 tgttaaaacc tttttcaaga gcgtaagtat ataaagctcc acgacgcatt ctcgaaaaat
    10201 aactacaaaa acttgaattt tctcttatgg tatcgcctga aacttcataa atatttgaat
    10261 caagcacgct atgtttaatg ccgtgttctt cacaatgtgc atgaagatga gaataatcct
    10321 cgcccatacc ataactcaaa gttaccgctt caagttcaaa tttaaaagga gcgtgagctt
    10381 gcatacgatt taaaagatgg gctaaagcca aagaatcttt cccgccacta agccctaaaa
    10441 gaaccctatc tccatcttta ataagtccaa atttagcatt agcttgtgca acttggcgta
    10501 tgagtttttt gctaagattt atcataattt ctcgcacatt ttaagcacaa aattggctga
    10561 aattttagct gaattgatca caaactcatc aaaatcaaat tcagcctttt cccctgcttt
    10621 atcactcata gctcttaaga taaaacaagg cacctttaaa gcatcacaaa ccaaagccac
    10681 acttgcgcct tccatttcac aagcatccgc attgaaaatt tctctaattt ttgctttttt
    10741 tgcttcatcg caaataaact catcacccgt tgcaataatg cctgcacgaa gtttgatatt
    10801 taattcctta gcaacttcta aagcaagatt gtttaatttc tcatcggttt tgataaaaat
    10861 ttcattacct ggaacaaaac ccaaaggatg tccaaaagca gtaatatcaa gatcgtattg
    10921 agctaatttt gttgcataaa gcaaatcgcc aatttcaagt tcaggattaa aagcacctgc
    10981 aactcctgta aaaagcaaag cttgtgcgcc aaatttttct atcatcacac tagcactaag
    11041 agtagaattt accttgccaa ttttagaata cgctaaaaca agttcatggt ttttatactt
    11101 tgcaaaataa taagtattgt tagcgtgttc tattttcgta taatctttaa gtgtttcaag
    11161 caaaggagtg atttcttcac tcatggctcc taaaattgct attttcatca tacaaccttt
    11221 aaaaattcat caatatcatt catatttgtt aaagcataag tttcttttga agtgattttt
    11281 ttattcaaac ccttaagcac acttgcgcca aattctatga aataatctac ttcattttca
    11341 catgccttaa tgctttgttt ataaagcaca ggagagataa gttgtgcttt taaaagctca
    11401 agggcttctt ctttgcttgt ataaattttg gcatttgcat tagaaattac ggctttaaaa
    11461 tttggtttta acaccttttc aagctccaca caaagcttag ctgaagcatt ttccaaaaga
    11521 ggacaatgac ttgccacgct catatttaaa agcatagctc ttttagctcc tgcttcttta
    11581 aatacacttt cataacttgc taaatcaggt tttaaacctg ctacaacgat ttgtccatcg
    11641 cagttataat ttgcagcgaa aatttgcttg ttttcttttt gtgctttttg acaaagctct
    11701 tcaacctttt catcatcaag ccccaaaacc accatcatac ctgcttcaac ttttgcacaa
    11761 tcttcttgca tgaaaagccc tcttttattg accaaagaaa gagcctctaa aaaatcaaaa
    11821 gcaccattga cagctaaggc tgaaaattct cccaaagaat gccctaaagc aaatttcgaa
    11881 cttaaatcag gttttttttc aagtaaaaca ctataagcca ttaaggaatt taaaacgatg
    11941 gcgggttgag taaattcact ttgattgagt ttttcgtttt cttcaaaaag caaatgttta
    12001 aaatcaatct tacaaaaatc acttgcgttt tgaaggagtt ctttggcttt tatagagttt
    12061 tcataaaaat cttttcccat gccaagactt tgagagcctt gacctggaaa tataaacgca
    12121 gcattcatta atgacaaccg caaccgccgc caccacagca accgccgcca ccatgtccat
    12181 gtccgtgatg atgatcgtgt ccatgtccgc ttccacaacc acaactatga cttcctgcga
    12241 taatacctgt aagaatttca tcttcactcg cagctctagc atctacgata tttaaagaaa
    12301 aaagcaaatc acgacctgca taaggatgat tataatcaat tgtcacatca ttttcaccaa
    12361 tttcttttac agttacacga acggtttcgc cattttcacc ttcgccaaaa agctccatac
    12421 ctacttttaa atcaatacct gcaaattgct cttttggtaa agtttgaacg gcattttcat
    12481 cgtattcgcc taaacctttt tcttttttaa ttaccacatc agcattgcta gggcaatcaa
    12541 gcttcatcac ttcttcttct aagctttcta aaatctgacc tttgcctaaa ataaaagaaa
    12601 taggttgaga atataaattt gattctaaaa cttcatttgt atttgcatct tttaactcat
    12661 aaaacattga aactacacta tttttttcta tagccatttt atctccttaa tttattttct
    12721 attaggtgaa gcttttgctt cgggtgaatt tggataatta gtttttaaag ctttataaaa
    12781 accatttgct gtttttgtat cacctgtttt atccaatgaa atggcagtat gatataaaag
    12841 ttttgggaaa taatctcctt ttgtactcaa agaagaactt tttttataat aaacaatagc
    12901 attgttataa tttttttgtt tatactcgat ctcccctaac caaaaatttg ctcttgcagg
    12961 tttatactgc tttgttatga gaaaatttaa ttttgctttg gaatcttcaa aagcattttt
    13021 atcaacatct tttatcgcta attctaaaat ttcattattt tttttctttt tccaagattc
    13081 atcaatttgt tttgctttat catcttgggt attttgagta ttattgtttt caatggtact
    13141 atttgaatct gtagttgaaa caacaacact aggtgtaata gttttaacgc ttaaatttgc
    13201 atcatttaat tcgtttttag aaacataatt tgcattaata gcatctacta aagaactaag
    13261 ttcggctaaa acttttttta cttgcttatt attagcttct tgaatttttc tactttcttc
    13321 aacataagcc tttaattttt gaatttcact agtaaaatta ttttcaatat tttgattatt
    13381 ctcttcaact tgacttaatc tagaatttga tttggcatat tgagaattta taccttctaa
    13441 agtgctttgt aaaccctcga ttctttcgtt aatttcatta attctagcat ttgtttgtat
    13501 attttcatta tttaaattat ctaacttttc tttaaataat ttttcatttg aagttaaacc
    13561 ataagaagaa ttgcttgtta tatctcctgc accaaaagct gagctttctg cataaagtaa
    13621 agtagctcca agaagagcta ctgtgaatat ttttttcatt aattatcttg ataatttaaa
    13681 ttcagcacgt ctattttgcg catcgcaagc tttagttttt tcagtgcaca caggatttgt
    13741 ttctccatag cttttaacag caattctatc agcatttaca cctttagcga ttaaagcttc
    13801 ttttacagct tttgctcttt ttaaacctag agcttggtta tattcatcgg ttccccactc
    13861 atcgcagttt ccttcaacag taatacttac accgcttact tcagtgttaa aaatattagc
    13921 atttgtgctt acaacatttt gcatatcagg acgaatgttg aatttatcaa aatcaaaata
    13981 tactttattt aaagtatcat taagttgaga aatttttgaa tcaatatccc aaccatcact
    14041 tccacctgaa ccacgatttg aatcaacact actatcaccg cttacgctag tgctttttgt
    14101 gctacaacca ctaataacaa ctgcaagagc tgcgattgaa gtaaaaagaa tttttttcat
    14161 ttatgacctt tcaaagttaa taaattctta ttattatatc taatttttaa ttaattttaa
    14221 cctaaaattg aaatttttac caatcaattg attgaatttt tccaacccta agaggaaaat
    14281 aaaaagtctt atttgcattt acacgaataa cacccaaagc actttgcgca cctaaatatt
    14341 tgataaatac tatacttcca ccatcactag aaaatcttgg aaataaattt tttccatttg
    14401 ctgtaagttg acgaatataa tcactattaa ttgacatcaa ataaatatta aaaacacctg
    14461 cttgatttgg ttcacgactt gaataaacca aaaaatcttt ataagtcgaa acagccgaat
    14521 tgtttctacc atgaaaaaca acttgttcag cactattgct atttaaatct tgcataaaaa
    14581 tattaggata tcctaaacga tcgcttacaa ataccacttt actatcatct gagccaataa
    14641 aatttccatt aacatcaata ccagaataat tagttaattg tgttagattt ttggtattta
    14701 agtcatataa ataaacatca ggctgatctt ttggagccat ggtaacaagt agtttacttc
    14761 catctacatt cacatcactt gctacaacca taccgccact tgataaaatt ttactagctt
    14821 tattggtatt taaatcataa cggtataaag ttggcttatc atgatcataa gctgtataat
    14881 aaaatagagt ttgttcttta tttccccatt ttggaaataa attaagtcca ccatcaacaa
    14941 taactttttg ataagttaaa gtataatcag ccataataat ttgacttttt ttagagctag
    15001 aatttctcgc gatcaaaatt ttatgatcca tccaatcaac aggtgcaagt cctaacgcat
    15061 ttacagaagc tttgacactt ttatgtgcca aaaatggata ttgctctaaa ccatttaaag
    15121 tataagtttg ctctgactta tcagaaccgc cagcttttat ttttacattt aaactcaaag
    15181 tgttaccatt tttatttaaa gtgtattcaa aaatataatt acttgtctca gttgcattag
    15241 caacaacttc aaagtttgaa cttactttca aatcgttcac aatgatatta taaaagcttt
    15301 tctttaaatt ctcatcactt aaatttgaat tgtctttaac aataatcttt ggtaaaacta
    15361 caccagaatt aacaacatca atcactggat cttctgccca aagacttcct aaaaagacta
    15421 aaaaaattgc tacaattttt ttcatttttt tctcctaatc atttttaact tttacttcat
    15481 ctcttaaatt catggtaatg cttatatttt tattttgcgg aggataagta ataaatttac
    15541 ctttttgact ttctaaaaat tcagccactt tagcatcata taaaggattc ccactttttt
    15601 caactgaagt atagccaaat tttccatttt catcaataaa aatttttacc ttaacagaaa
    15661 ttttttcact atttggataa tactgagtcc atctttgagt gataatacgc acaactttcc
    15721 ctaaaaattc atcataaatt ccaatctttt gcgcctttgt gctttcgcct tgcgttgaac
    15781 tttcttcttg aagtaaacta tcattaagtt gttttacaag ttcagaagct tgaggttttg
    15841 gggcactaga aattcctgat ttagcacttg attgaatttt tgtagtcttt tcttcttgta
    15901 tttctttaat atttccaaaa agctcattaa aattacttgc cttttggtca atatcttcag
    15961 ttttaactgt tttatttgta gtctgagcaa aaagcttttc tatatcaatt tgctctgttg
    16021 gtttttgtat ttctttagga gtgttgcttt gagtaataac ttgttttgat ggttcagcaa
    16081 gttcaatatc tacaaaacta tcttttatat cagtatattg tatagcaggt tcaacctcgc
    16141 ttacaagtct aaaaaaaaca agaattacta tactaatata tattgctaaa gcaagtaaaa
    16201 acgaatttaa attactcaaa ccataatttt tcatgattat tcagtctgta aagcaacttt
    16261 attaaatcct aaatttttta cacttcttaa gactgaaata acatcgtcat attttaagct
    16321 tttatcagcg cgtataaaaa ccggatcttc ggtattaaat tgtgcttttc tttgagcaag
    16381 attgtcagca aaacttataa aatcgtattt ttcttgattt aaaaaaattt ctttttttac
    16441 attaatacta ataattaaac tcttaacagt tggagtgctg gtattttttt gactaccttg
    16501 tggaagatta attttttctt cataagtaat gcttggagct gttaccatta aaatcgcaag
    16561 caatacaagc ataatatcta ctaaaggtgt gatattaagt tcaggttttt catcatcaaa
    16621 tggcattttt aaccttattt actcgaactt ataactttaa tctcgctatc aataatgctt
    16681 aaaagttcaa aagcttttct tttaatgatg agatgaaatg tataagcagg aattgctact
    16741 aaaataccac aacctgtagc aactaaagcc tcgctgattt taggagctat gatacttaaa
    16801 gaattttgag ttccaagccc accaaaagtt tcaagtatag aaataactgt cccaaaaaga
    16861 cctataaaag gtgaagttga agcaataata ctaagccaag taagtccagc agaagcgcgg
    16921 cgacttgcta aatttttata gatttctaaa tgatttgaag ttgtatcatt acattttctt
    16981 aaaatcgaat cagtacgact taaatccttc tcacccaaga gcaaagtttc taaactttct
    17041 ttttctttat ttctccatgt agccaaataa gtcaatctag caaacaaaat actaaatgct
    17101 aaaataaaat ataaagaaag ccataataaa actatataag taataatact tgaactattg
    17161 aaaaaatgaa atatagcttc aaaattcatt aatgcatcct tgcattatca agttttgaaa
    17221 aagttgctgc taaagctgca ttatcagaac tcatagattt aatcaaatct tttgcttgag
    17281 caagattttt ttcaatctca ctttcatcac ttccacaaac ccaaaccgca ccctttgcta
    17341 acacgcaaat cttatcttca tctacctttg catgtccagc atcaatagca attaattcat
    17401 ggtttaaatc agctttttca atatcaatta ctccagattt taaagaagaa accaaagcag
    17461 catgtccttt aagcacgcca aattctcctt cactacccgg taaagtaaca gattttactt
    17521 ctccttgata gattacaccc aaaggcgtaa ctatctcgaa attaatcaaa tcgttcataa
    17581 attaaccttt taatttatcc gcttttgcaa tagcttcatc tatatttcca accatataga
    17641 aagcattttc tggtaaatga tcatatttac cttctaaaat tcccttaaat cctgctattg
    17701 tatcttcaag gcttatatat tttcctgggc tacctgtgaa aacttctgca acgaaaaatg
    17761 gttgtgataa gaatttttca atctttcttg ctctttcaac tacaagttta tcctcttcgc
    17821 taagctcatc catacctaaa atggcgatga tatcttgtaa atctttgtat ttttgaagca
    17881 ctgattgaac accacgagca actttataat gttcttctcc aatgatattt gggtcaagca
    17941 ttcttgaagt tgagtcaagt gggtcaactg caggataaat acccttttca gcaatagctc
    18001 tatttaaaac cgttgtagca tctaagtgag caaaaacagt tgctggagct gggtctgtta
    18061 agtcatcagc tggaacgtaa acagcttgaa ctgaagtgat tgagcctttt ttagttgaag
    18121 taattctttc ttggaattta cccatttcac ttgctaaggt tggttgataa cccacagctg
    18181 atggaattct tcctaaaagt gctgacattt cagaacctga ttgtgaaaat ctaaagatat
    18241 tatcaataaa cataagcaca tcaagaccca tttcatctct aaaatactca gccattgtta
    18301 aacctgttaa agcaatacga tttcttgccc ctggtggttc attcatttgt ccataacata
    18361 gagcaacttt gtctaaaaca ttactttctt tcatttcatt ataaaggtca tttccttcac
    18421 gagttctctc acccacacct gcaaatacag aatagccgct atgcttaaat gcaacattgt
    18481 gaataagctc cataataata acagttttac caacacctgc accaccaaaa agacctactt
    18541 taccaccttt tgcataagga gcaagtaaat ctacaacttt aatccctgtt tcaaaaatct
    18601 cactttttgt gctttgatct tcaaaagctg gtggatctct atgaattgcc cattttttat
    18661 cgaaagaaat ttcttcacct tcatcgatca aatctccagt aacattgaaa attcttccta
    18721 aaactttctc accaacagga acactaatgg gagcacctaa agcctcagct tttaagcccc
    18781 ttaccaaacc atctgtcata tccatagcaa tagttctaac tctattatct cctaaatgag
    18841 ctgctacttc taaaacaagt ttatgttttt ttccttcgct ttcaaaattt acaacaattg
    18901 cttcattaat ttgaggcaaa tagtcgttaa aatctacatc aacaaccgga cctaatacct
    18961 gtgaaataaa tccttgcatt atttatcttc tccttaaaat tttactattt cattgattca
    19021 acaccactga taatctctat aagctcagta gtaatggatt cttgtcttgc tttgttataa
    19081 gctaaattta gttgtttcac tcttgccttt gcgttattag ttgcattatc catagcttgc
    19141 attcttgcgc tatgctctgc cgccaaagaa tcgattaacg cataatacat attatactca
    19201 aaatacgttt tcattaaatc ttttaaaagc tcagttcctt ccggttcaag ctctaaaaga
    19261 gaattatgag tctgttcaat actctttggc tcaactggaa taagatgatt aattttaagt
    19321 tcttgcgtaa tcatattttt ataaccatta tgaactaaaa tcacttcatc tgtatttcca
    19381 tttaaaaaat catctacagc agcatgaatt acttcacatg ctttctcata atcaggacta
    19441 gaactaagat ggaaatattt ctctaacaat tctatttttt gaaaattaaa atattcaatc
    19501 ccagttttac ctatagctct aagacgaata ttaatatttt ttgcttcata ttcttttagc
    19561 atttcactta ctgtttttaa agtcttaata ttaaaaccac cgcataagcc tttatctgca
    19621 gtgataaata ttaaatctac ggttttaatt tgttcttttt tatgaaacaa agataaacgc
    19681 acatcatctt cattgtgaac aattttattg atctgaaatg aaatttcact caaaatttca
    19741 tcgatttttt gtgcataaat ttttgatctt ttagctgctt cttctgcttt ttttaactta
    19801 gcagtagaaa ctagcttcat agcatttgta gtcttttgag tgttatgaac acttttaatt
    19861 tttcttttaa tttcttttaa attagacata aaagacctta taaatgattt gctttaaact
    19921 cattaatggc tttagctagt ttttcttcca aatcagaatc taaagctttt ttagagcgaa
    19981 tttgctcaaa aatatctgga tgttttgcct caataaaagg ataaattcca tcttcaaatt
    20041 ccttaattct agaaacagca atatcatcta agaaaccttt ggttcctgca aaaattaaaa
    20101 ctacttgttt ttcaacgcta agcggagaat aaggtggttg ttttaaaagt tcaaccattc
    20161 tttgtccacg ttcaagttgt tttctacttg cctcatctaa atcactagca aattgtgcaa
    20221 aagcttgaag ctctctatat tgagcaaggt caagtcttaa tgtgcctgaa acttgttttg
    20281 tagctttaat ttgagcagcc ccacctacac gagatactga taaaccaaca ttaattgcag
    20341 gacgaattcc tgagttaaat aaatcagttt ctaagaaaat ttgtccatct gtaattgaaa
    20401 taacattagt tggaatataa gcagaaacat ctcctgcttg tgtttcaatt atcggcaatg
    20461 ccgtcaaaga accagcacct aattcatcat ttagcttgct tgctctttca agcaatcttg
    20521 aatgaaggta aaaaacatca cctggataag cttcacgacc tggaggacga cgtaaaatca
    20581 aagacatttc gcgataagct acagcatgct tgctcaaatc atcataaaca attaaagcat
    20641 gttttgcgtt gtctctaaaa aattcaccca tggttacacc agtatatgga gctaagtact
    20701 gtaaagccgc aggatctgaa gcaccggcat ttacaacaat agtatattcc atagcaccat
    20761 gttcttctag tcttttaacc acttgtgcca ctgtactttg cttttgacca attgcaacat
    20821 atatacagat aactccttga cctctttgag atataatagt atcaacagca acagtagttt
    20881 tacctgtttg tctatcacct atgataagct ctctttgacc acgaccaatt ggcacaagcg
    20941 catcaatagc tttaattcct gtatgtaaag gctcatgaac actttttctc gccataatac
    21001 cttttgcttt ttcttcaaca aaacgatatt cattagcatt gatcacacct ttagcatcaa
    21061 ttggctcacc taaagcattt acaacacggc caatcaaagc ctcacctact ggaactttaa
    21121 gtaatttctt aagtcttttt acagaagcac cttcttttaa accttctcct tttccaagta
    21181 taacaatacc tacactcgac tcttcaaggt ttaaggccat tcctttatca ccattttcaa
    21241 attctaccat ttctccagcc ataatattct taagtccata taccttagca acaccatcag
    21301 ctacagaaat aatctttcct gtttcttcaa tttcaagatt taaatcaaaa ttttcaattc
    21361 tttctttgat tattgaactg atctcatcag ctttaaattt catttacttt ttctccttag
    21421 ataattttca atatatattc gtttagctta ttttgaagag ctttcataga aaaagaaagt
    21481 tcataaccta attcttctaa ttctatttta acactatcat cttgactgat tttattattt
    21541 agtttaatat ttgcatcaaa ttttttgtta agtttgactt caagatcttt aagattttct
    21601 tgacttaatt tttctttaga atatacaata ccaacaaaaa tattttcttt aaaagctttt
    21661 tgtctttcaa gttctttaac tatttgagga atgcattcta atcttgaatt ttc
//
LOCUS       DARBAR010000015        20662 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.015, whole genome shotgun sequence.
ACCESSION   DARBAR010000015 DARBAR010000000
VERSION     DARBAR010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20662
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.015"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..313)
                     /locus_tag="SB815_000414"
     CDS             complement(<1..313)
                     /locus_tag="SB815_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG0906184.1"
                     /translation="MLRKADIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFVRQGLAQNLLDFILKTY
                     LH"
     gene            complement(297..956)
                     /locus_tag="SB815_000415"
     CDS             complement(297..956)
                     /locus_tag="SB815_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HEG0906185.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAKK
                     S"
     gene            complement(946..1722)
                     /gene="surE"
                     /locus_tag="SB815_000416"
     CDS             complement(946..1722)
                     /gene="surE"
                     /locus_tag="SB815_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEG0906186.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            1902..3270
                     /locus_tag="SB815_000417"
                     /pseudo
     CDS             1902..3270
                     /locus_tag="SB815_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006639.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            3412..4164
                     /gene="peb3"
                     /locus_tag="SB815_000418"
     CDS             3412..4164
                     /gene="peb3"
                     /locus_tag="SB815_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HEG0906187.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVI
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            4261..5355
                     /locus_tag="SB815_000419"
     CDS             4261..5355
                     /locus_tag="SB815_000419"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEG0906188.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELANLSFTQKINGILCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGK
                     KILCVPSFNLEKLEVYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            5367..5852
                     /gene="greA"
                     /locus_tag="SB815_000420"
     CDS             5367..5852
                     /gene="greA"
                     /locus_tag="SB815_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEG0906189.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            6003..6620
                     /locus_tag="SB815_000421"
     CDS             6003..6620
                     /locus_tag="SB815_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEG0906190.1"
                     /translation="MLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFF
                     KRVKIFNLQEQPIKLNLHTSKGNNLVLNSAFIKLAHGDIFLPPLLQFTLKTLRNHYLL
                     VFLNFLNIITRNFISNKILQNQNKKNLFYQIKDFENLAKKRYEKYENLGFWVCEGHYH
                     QNHQINKENIKYLNLASFAYERSFFVVEYQQEIKFREQKLRGQNV"
     gene            6613..7569
                     /locus_tag="SB815_000422"
     CDS             6613..7569
                     /locus_tag="SB815_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HEG0906191.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQIYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGAQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            7573..9882
                     /locus_tag="SB815_000423"
     CDS             7573..9882
                     /locus_tag="SB815_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEG0906192.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSIPQAELEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            9887..10408
                     /locus_tag="SB815_000424"
     CDS             9887..10408
                     /locus_tag="SB815_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HEG0906193.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            10408..11031
                     /gene="serB"
                     /locus_tag="SB815_000425"
     CDS             10408..11031
                     /gene="serB"
                     /locus_tag="SB815_000425"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEG0906194.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICIDIKDLKEIIKVI"
     gene            11031..12008
                     /locus_tag="SB815_000426"
     CDS             11031..12008
                     /locus_tag="SB815_000426"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEG0906195.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKEKKTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAIGKENIMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMH
                     FKKPLMNFEIYTELNQIISQSEREKACNDLLSDGLEQFCIAFEDILKAL"
     gene            complement(12009..12431)
                     /locus_tag="SB815_000427"
     CDS             complement(12009..12431)
                     /locus_tag="SB815_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HEG0906196.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(12428..15697)
                     /gene="carB"
                     /locus_tag="SB815_000428"
     CDS             complement(12428..15697)
                     /gene="carB"
                     /locus_tag="SB815_000428"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEG0906197.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDEI
                     DFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINPKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYVRMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTIPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(15958..16707)
                     /gene="mreC"
                     /locus_tag="SB815_000429"
     CDS             complement(15958..16707)
                     /gene="mreC"
                     /locus_tag="SB815_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEG0906198.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGEKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(16697..17737)
                     /locus_tag="SB815_000430"
     CDS             complement(16697..17737)
                     /locus_tag="SB815_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEG0906199.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGVSLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGLDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(17749..18972)
                     /gene="clpX"
                     /locus_tag="SB815_000431"
     CDS             complement(17749..18972)
                     /gene="clpX"
                     /locus_tag="SB815_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEG0906200.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPRGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(18965..19756)
                     /gene="lpxA"
                     /locus_tag="SB815_000432"
     CDS             complement(18965..19756)
                     /gene="lpxA"
                     /locus_tag="SB815_000432"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEG0906201.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNNVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGIRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(19756..20196)
                     /gene="fabZ"
                     /locus_tag="SB815_000433"
     CDS             complement(19756..20196)
                     /gene="fabZ"
                     /locus_tag="SB815_000433"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEG0906202.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVLGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            complement(20290..>20662)
                     /locus_tag="SB815_000434"
     CDS             complement(20290..>20662)
                     /locus_tag="SB815_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="diacylglucosamine hydrolase like protein"
                     /protein_id="HEG0906203.1"
                     /translation="DKKPVKSHILFYSHFKNAYTRFSLDEENLKQNLKEGFYRSTKDE
                     IVLVEFWRFNAFFKNKWKNFEDFLKKPLSVQAEIKWRNKLFGTYNLSPIIILENILPS
                     RYEVIAKSEIYHDNQEVLVKI"
BASE COUNT         7044 a         3484 c         3141 g         6993 t
ORIGIN      
        1 tatgcaaata agtttttaaa ataaaatcaa gtaaattttg tgctaaacct tgtctaacaa
       61 aatcaggatg agtaaaaagc aaatcaagca atttctgctc ttgtttaaca cttataaaac
      121 ttgcgatttt tcctcttttt tcatagacaa agatctcatc atatttaaat ttttcttccc
      181 attgttgtct atcaatttta atccaagcac aaatttgatc ttttgtataa tccttagcac
      241 aaagtgtttt tacgctttgc tcaaaaagcg acaaacaagc atttaaatct ttaatatcag
      301 cttttcttag caagaacttt tcttaatgcc aagctggcta gggctaaacc aaaagatgca
      361 gtcacaccca taaaagatcc aagatcttta caatgcgctt cctcatctga aaataccaca
      421 tcaaaatttc ccttaaagcc tgattttcta agctcataac gaaatttttt cgctaaagca
      481 tcgccgtgag ttttaaaaat acttgtagtt ttaatgcgtg ttggatcaag ctttctagct
      541 ccacctgttg aggagataaa aatttgtttt ttaaaatcta taagatgagc caaagctact
      601 tttgcaggaa tatcatcaat ggcatctatg ataagatcaa actcgcttaa atcaaaattt
      661 tttaaaaaat tttcatcgat tttactgact atacctttaa ccttataaat tctttcaaat
      721 actttagcct tttcttcgcc tatattttcg ctatgaattt ggcgattttg attagtgatt
      781 tcaaatttat ccgcatcgat taaagtaagg tttttaaaac cactacgata aagcgcatca
      841 acgcaaattc cacccactcc accaagtccg caaaccaaaa cttttgtttg tgaaattttt
      901 tgaaattttt cttctccaac tagccatttt atacgtgtaa atctatcatt catcatttgc
      961 ctttaaccat tttttaactt ttttcattct ttcataagct gtaagatcca gcattatagg
     1021 tgttattgta gcgtagcctt ttttaagtaa ggcaatatcg ctatttttct catcttcaaa
     1081 gtctaaattc gccgctgcaa gccaatagta ctctactcct ctcggattga catttgaatg
     1141 ggcttcaaaa ttataaaccc ttttgcctgc tttacaaatt ttaatgcctt tgatttttga
     1201 ttttgcagga aaattgatat ttaaaaattc ttttttttcc aaaggaaaac ctttatcaaa
     1261 aatattttga atgatttttt tggtaatttg taaagcattt ttatagtcta gttctttttc
     1321 gcttttttta taaaattgag aaagagcgat agcaggaatt ccttgtaaaa ccgcctccat
     1381 agctcctgcg caagttcctg agtaggtaat atcctcgcct acattagcac ctttattaat
     1441 cccacttatt acaagatcag gcaaacgctt tttgtataaa gcatgcaaag caagataaac
     1501 acaatctgct ggagtgccat catcaagttt gtaaaatctt tttcccactt taacaaaacg
     1561 caaaggtttg gttagggtta tagagtgcga acaagctgat ttttcactag caggagctac
     1621 tatggtgatc ttggctttaa attcttttgt taacatctta atgagttttt taagtccttc
     1681 gctttcataa ccatcgtcat tagtgataag aatttctttc attgtcttcc ttgcaaaaga
     1741 taaaaatctg gattttaaca tattttttta aagcttcata gtataaaatt ttaattttta
     1801 aattatataa atttcgtatt atttttaatt atttttttat tttatatcga ttaacattat
     1861 ttaaactata aaaatataaa gttagtaagg atggtttaaa tatgtttgat tttttcaaac
     1921 ctaaggcaaa agctattaaa tttcctcttt aggaaatttt acctagatat tacaaaatga
     1981 gaacttggag tttaagtggg gtttttatag gatatatggg atattatctt gtgcgaaata
     2041 atatcactct ttcaactcca tttatacaaa atcaacttaa tctcagtaaa tcagacatcg
     2101 gaacaatcac aggctcaatg cttatagctt acgggattag caagggtgca atgagcgtta
     2161 taagcgacaa agctgatcct aaaaaatcat ggctttaggt cttattttat gtgctcttgt
     2221 aaatgtttta cttggttttt caaattcttt ttacgcttat gtaggttttg ttatcgcgct
     2281 tggggttttt caaggtatgg gggtaggtcc ttcttttatc actcttgcaa actggtatcc
     2341 taaaaaagag cggggaattt acacggccgt ttggaatatc tcacataata taggaggcgg
     2401 gatagttgct cctatagttt cgctttcagg ttttgctttg gcagcattat tgggtgtgag
     2461 tatggcaaat tttaacgaaa catattggca catgaatcat ttttatactc ctgctgcttg
     2521 tgcagttatc attagtcttt atgcgcttta tgcagttaaa ggaaatccta aaaatgaagg
     2581 tttggttgat attactgaaa tcaatgaaat gcgagggatt aaaacagaag aaatcaaagc
     2641 tatagaaact ccaaatttaa gcagttttga aattttttat cattatgtac ttaaaaacaa
     2701 aaatgcttgg tatgtggctt ggatggatac ttttgtttat atggtgcgtt ttgggcttat
     2761 ttcttggctt cctatttact tgctagaaac aaaaggcttt aataaagaac aaataggtat
     2821 tgccttttgg ctttttgaat gggctgctat accttctact ttacttgcag gatatatttc
     2881 agataaaatt tttaaaggct atagaatgcc tcctgctata ggcgccatgg tgattatttt
     2941 ctttatgatt attggatatt ttacttcaaa taatctttat atggttattt tctttgcagc
     3001 tatggcgggg tgtttagtct atataccaca atttttagca agtatgcaaa ctatggaagt
     3061 cgttcctgct tttgcagtag gatcttgtgt aggacttcat ggctttatga gttatgtagt
     3121 cggcgcttca cttggaacaa aagcataggt tgggctgtgg attactatgg tagttggaat
     3181 gctggtctta tcatgctcct tagtgcttgt attctttgta tactttgttc tactttatgt
     3241 cattttagcg ctaaaaagaa gcatcaataa caattttaac ttttgcttgc aaaaatacca
     3301 agcaaaagtt agattttaat aatatttttg ttacattata actatttatt aacatacaat
     3361 ttctaaaatc ttaccttcaa tcaataaaaa tttatcataa aaggaaatac tatgaaaaaa
     3421 attattactt tatttggtgc atgtgcctta gcttttagta tggcaaatgc agatgtaaac
     3481 ctttacggac caggtggccc acacacggcc ttaaaagata tagcaaacaa atatagcgaa
     3541 aaaacaggcg ttaaagtaaa tgtaaatttt ggccctcaag cgacttggtt tgaaaaggct
     3601 aaaaaagatg cagatatttt atttggcgct tcagatcaat cggctttagc tatagcgagt
     3661 gattttggaa aagattttaa tgtgagtaaa atcaagcctt tatattttag agaagccatc
     3721 atacttactc aaaaaggcaa tcctttaaaa atcaaaggtt taaaagattt ggctaataaa
     3781 aaagtaagaa tcgttgtgcc tgaaggtgct ggaaagagca atacttctgg aactggagtt
     3841 tgggaagata tgataggtag aactcaagat ataaaaacca tacaaaattt tagaaacaat
     3901 atcgtggcct ttgttccaaa tagtggaagt gcaagaaagc ttttcgcaca agatcaagcc
     3961 gatgcttgga tcacttggat tgactggtca aaaagcaatc ctgacatagg aactgccgta
     4021 gctatagaaa aagatttggt tgtttataga acttttaatg tgatagctaa agaaggtgcg
     4081 agcaaagaaa cacaagattt tattgcttat ttaagttcta aggaagctaa agaaattttt
     4141 aaaaaatacg gctggagaga ataaaccttc atacacgctt tttagcgtgt attcttgcat
     4201 aacttctttt aattaagcca aaataagata aaatgtttaa aatattgata aggaaatttt
     4261 ttgaaaacct ttttagtttg tgctttagag ccttcagcaa atttgcattt aaaagaagtt
     4321 ttaaaagctt ataaaaaaga ttttggtgaa tttgaacttc atgggattta tgatgagagt
     4381 ttatgcaaag aatttgattt aaattctaaa ccactttata gctcacatga atttagtgct
     4441 atgggtttta tagaagtttt acctttgatt ttcaaagcaa aaaaagctat aaaagaactt
     4501 gcaaatttaa gctttactca aaaaataaat gggattttat gtatagattc acccgctttt
     4561 aacatacctt ttgctaaagc tttaaaaaaa gcaggcagta aaattccacg catttattat
     4621 atcttgcctc aagtttgggc gtggaaaaaa ggtcgcatac ctatcataga aagtcatttt
     4681 gatattttag cttctatttt gccctttgat aatcaatttt ttaacaaaag cacctatata
     4741 ggccatccgc ttttagatga gataaaagaa tttaaaaatc aagaagacat taatcataca
     4801 ttttcaaaaa aagatgatga aaaaactata gcctttttac caggttcaag gcgtagtgaa
     4861 attaggcgtt taatgcctat ttttaaagaa ctttctcaaa aatttaaggg taaaaaaatt
     4921 ctttgcgttc cctcatttaa tcttgaaaaa ttagaagttt atggtgatat tagcgaattt
     4981 aagatagaaa gtaacactcc aaaagtgctt aaaaaagctg attttgcctt tatttgtagt
     5041 ggaacagcta ctttagaagc agctttagtg ggaactcctt ttgttcttgc ttataaggca
     5101 aaggctatcg atatttttat cgcaaaactt tttgtaaaat taaaacatat aggacttgca
     5161 aatatttttt gtgatttcgc tggaaaagaa gctttaaatc ctgaattttt acaagataaa
     5221 gtcaatgttt taaatttata tgaagcttac aataaatatg attataaggc attttttgct
     5281 aaagttgatt ttttaaaaga atatttacaa tttggaagtg ctaaaaattt agcaaaaatc
     5341 ctaaacgaaa tataaaagga taaatcatgc aaaaagaacc aatgagtcaa tttggctatg
     5401 ataagttagc cgcagaatta aaagatttaa aagacaatca acgccctgcc gttgtaatag
     5461 aaatcgatac agcaagaagt catggggatt tgaaagaaaa tgctgaatac catgctgcaa
     5521 gagaaaagca agctttgata gaaagtcgta ttgcagagct tagtgacttg ctagcaagag
     5581 ctcaagtgat cgatccttca agctatgagc acgatagtgt gaaatttggt tcaagtgttg
     5641 tgatcatgga tttggataca gaaaaagaaa gcaaatatac tctagtagga atttgcgaag
     5701 gaaatttaga taagggttat atttccatcg catctccaat agcaaaagct atgcttggaa
     5761 aaaaagaagg agatgatttt aaagtgcgtt tgccaaaagg tgaaagtgaa tttgaaatcc
     5821 tttctataaa ttatgagcct ttgaaatttt aaggataaaa aattttacta caaaatggag
     5881 cgattttaat cgcagatgct catgaaaatg aacaaagaaa gggattttgg gaatttttac
     5941 aagccttaaa aaaaggtaaa atttccaccc ctcaactcat acttataggt gatattttcg
     6001 atttgcttat aggcgaaatc tctgctacac atgaatttgc taaaccttac atagaacttt
     6061 tagaagaatt ggccttaaaa attgaaatta tctacttaga aggcaatcat gattttaatc
     6121 tttcttgttt ttttaaaagg gtaaaaattt ttaacttaca agagcagccc ataaagctta
     6181 atttgcatac aagtaaaggt aataatcttg ttttaaatag tgcttttata aaattagctc
     6241 acggagatat ttttttacca cctcttttac aatttactct gaaaacatta agaaatcatt
     6301 atttgcttgt atttttgaat tttttaaata ttattactcg taattttatt tcaaataaaa
     6361 ttcttcaaaa tcaaaacaaa aaaaaccttt tttatcaaat aaaagatttt gaaaatttag
     6421 cgaaaaaaag atatgaaaaa tatgaaaatt taggattttg ggtatgtgaa ggacactatc
     6481 atcaaaatca tcaaatcaac aaagaaaaca ttaaatatct taacttagct agttttgcat
     6541 atgagagaag tttttttgta gtagaatatc agcaagaaat caaatttcga gaacagaaat
     6601 tgaggggtca aaatgtttga tgaaaatatc gtgaaaacgg gttcaaatga aatggagctt
     6661 gtcgatttcc gtatctttaa gcaagggcac gataaagtct atgaaggaat ttatggtgta
     6721 aatgtttcta aggtaaggga gattataaaa atcccaagcc ttacagaact tccaggtgta
     6781 cctgattaca tcgaaggaat ctttgatctt cgtggagtgg ttatacctgt agtcaatctt
     6841 gccaaatgga tgcaaatcac tgagccagaa agcactatgc taaaacctag agttattatt
     6901 actgaattta gcaatattct tattggtttt atagttcacg aagcaaaaag aattcgtaga
     6961 ataaactgga aagatataga accagcaact ttttctacag gatcaggtgc tttagataaa
     7021 ggtaaaatta caggtgtaac acgcattgaa aatgatgaag tgttgctaat tttagatctt
     7081 gaaagtgttg ttgaagattt aggaatttac gctccaaaaa cagatataga ttttggaaaa
     7141 atagaaaaat ttactggaac agcacttata cttgatgaca gcatgactgc tagaaaacgc
     7201 gtcaaagaaa tgatgcaaca gatgggcttt caagttgttg aagctaagga cggcgtagag
     7261 ggcataaaca aattagaaga attaagccaa atttatggtg aaagtttaaa cgatacttta
     7321 aaaattatag taagcgatgt cgaaatgcca caaatggatg gtttccactt tgctgcacgc
     7381 attaaagaag atccaagatt taaagatatt cctatagtct ttaactcatc tttatcaaat
     7441 gaatttatga atgagaaagg tgctcaagaa gctggtggag aaggctatct tgtcaaattt
     7501 aacgctagcg atttcttcaa tgaaattgca aaggttatta aaaaacatca atctcaagaa
     7561 caggggtaaa atatggaaga tatgcaagaa atacttgaag actttttggt tgaagctttt
     7621 gagcttgttg agcaaatcga ccatgattta gtagagcttg aatcaaatcc agaagattta
     7681 gaattattaa atagaatttt ccgtgttgca catacggtta aaggatcatc aagcttctta
     7741 aattttgatg ttttaacaaa gttaactcac cacatggagg atgttttaaa caaagcaaga
     7801 catggcgagt taaaaataac tccagatatc atggatgtgg ttttagagtc tattgataga
     7861 atgaaaactt tacttaattc cattcgtgat aatggcaacg atactgctat tggtatggat
     7921 atagaaccaa tttgcgcaag attaacagct atttcagagg gagagtctcc tgttgtggca
     7981 acagattcaa atgaaaaatc tattccacaa gcagaactag aagcaccaaa acaagaaata
     8041 gctactccag aacctgaagt agatgttaat caattaagtg attctgaagt tgaagctgaa
     8101 atagaaagac ttttaaaagt tagaaaagct gaagatcaag ctcgtcgcgc acaaaagaaa
     8161 caaacaacaa atgcggcacc taaaccgact aacaatacag caaataaacc tacggaaagt
     8221 ggagagaaaa aagttcctgc ttcaggtagt aatgctagca gtatggatca aaccatacgc
     8281 gtggaggtaa aaagattaga tcacttaatg aatctaattg gagagcttgt tttaggcaaa
     8341 aaccgtttgc ttaaaattta cgatgatgtt gaagagcgtt atgaaggaga aaaattcctt
     8401 gaagaactta atcaggttgt aagtcaatta agtattatta caactgatgt tcagcttgct
     8461 gtgatgaaaa caagaatgca acctatagca aaagttttca ataaattccc aagagttgtt
     8521 cgtgatttaa gtcgtgaatt aggaaagcaa atagaacttg aaattacagg tgaagaaact
     8581 gaacttgata aatctatcgt agaggaaatt ggcgatccta tcatgcatat gattagaaat
     8641 tcatgtgatc atggtgttga ggatccagca actcgtgcag caaatggaaa acctgaaaaa
     8701 ggtatagtac aacttaaagc ttataatgaa ggcaatcaca tcgttgtaga aattacagat
     8761 gacggtaaag gacttgatcc aaatggctta aaagcaaaag ctatagagaa aaatttgatt
     8821 accgaaagag aagcagatca aatgacagac aaagaagctt ttgctttgat tttcaagcct
     8881 ggtttttcaa ctgcagctaa agtaacaaat gtttcaggtc gtggtgtagg aatggatgtt
     8941 gttaaaacca acatcgaaaa acttaatggg gtaattgaaa ttgatagtga gttaggcaaa
     9001 ggaagttcat ttaaacttaa aattcctctt accttggcaa tcattcaatc tttacttgta
     9061 ggaactcaag aggaattcta tgcaattcca cttgcaagcg ttcttgaaac agttagagtg
     9121 ccaattgatg atatctatac tatcgaaggt aaaaatgtat tacgcttaag agatgaagtg
     9181 ctttctcttg tgagactttc agatgtattt ggagttaaac aagtccttga aagcggtgat
     9241 caaacttatg tcgttgttat aggggtagca gaaagcaagc ttggtattat agtagatact
     9301 cttgtaggac aagaagaaat agttattaaa tctatgggtg attatttaca aaatatccaa
     9361 ggtatagcag gagctacaat ccgtggtgat ggtagagtga cattaatcat tgatgtaggt
     9421 gctatgatgg atatggccaa agaaattaaa gttgatatta aagcgcaatt agaatcaagt
     9481 gccaaaaaac ctaaagaaca accaagtgac tataaagtct taattgtaga tgattctaaa
     9541 atggatagaa ctttaatgca aaaagcttta gaaccgctag gagttagttt aatcgaagca
     9601 acaaatggtg ttgaagcatt gaatattata aaatctggcg aacatgatat tgatgcaatg
     9661 cttatagata tcgaaatgcc aagaatggat ggatacacct tagctggtga aattagaaag
     9721 tattctaaat atcgcaactt accattgata gcagttactt caagaacaag taaaactgac
     9781 cgtttaagag gtgttgaagt gggtatgact gaatatatca ctaaacctta ttctccagaa
     9841 tacttggaaa atgtggttag aaaaaatttg aaactaggat aagaatatga gtaatgaaaa
     9901 attagagcaa attttgcaaa aacagcaaac tcagatggct ggtcctgatg tcgatcaaag
     9961 agaagatgat atcatccaac ttgttggctt tgtagttgga gatgaggaat atgcgattcc
    10021 aattcttaat atacaagaaa tcatcaaacc tatagaatat actagagttc ctagtgtacc
    10081 tgattatgtt ctaggggttt ttaatatgcg tggtaatgtt atgccgctca ttgatctagc
    10141 tcaacgcttt catttaggaa gttctaaaat gacacctcaa acaagatata ttgttttaag
    10201 aggtgagaca aatggaactg gagttggagg aaatgctggt tttgttatag atagattaac
    10261 tgaagcaatt aaaattcaca gaaacagaat cgatccacca cctgaaactt tagttaaaga
    10321 caaaggtatg atttatggta taggaaaaag agatgaaaat atcttaacta tactcaaagt
    10381 agaagctttg cttaagcgcg aattttaatg attaaacttt gtgtttttga ctttgatgct
    10441 actttaatgg atggtgaaac catcgatatt ttagctacag cgcatggcaa gggtaatcaa
    10501 acaagcgaaa ttacccgcca tgctatgact ggagaacttg attttttcga aagtcttcaa
    10561 aaacgagtaa gctttttaaa aggtatgtct tataaaaaag ttttagaatt aagtagcaca
    10621 cttccactaa tgcgtggagc acatgaactt atccaatatt taaaatctaa aaatatacaa
    10681 attgttattt ttagcggtgg ttttcatgaa ggcataaatc ctgctatgca aaaacttgga
    10741 attaacctcg gttttgcaaa ttatctgcat cataaaaatg acattttaac agggctagtt
    10801 ggtggggaaa tgatgttttc aaattcaaaa ggcttaatgc tacaacgatt aaaaagcttt
    10861 ttaaatttga aaacagatga agtgatgtgt gttggcgatg gggcaaatga tttggcaatg
    10921 tttaacgaaa gtggattaaa gattgcattt tgtgctaaag aaattttacg ttctcaagct
    10981 gatatttgca tagatataaa agacttaaaa gaaataataa aggtaatata atgaaaaatt
    11041 tttctctttg gtgtgatttt atagaaaata gttttttaga taatgaattt ttaaatttat
    11101 tatcacatgg aattaatggc gctacttcaa atcctgctat ttttaaaaat gctattttaa
    11161 attctccaat ttataaagat aaaattctta aattaaaaga aaaaaaaaca aaagatattt
    11221 atgaagaatt agcaatttct gatattcaaa aagcagctga taaattagct cctctttttt
    11281 atcaaaaaaa tgatggattt ataagtattg aaatagatcc aagacttcat gataacacaa
    11341 ctcttagttt aggtgaagct aaaagacttt atagtgctat tggcaaagaa aatataatga
    11401 ttaaaattcc agctacaaaa gcttcttatg aagtaatgta tgaacttatg aaaaatggta
    11461 ttagcgtcaa tgctacctta attttttctc ttgaacaaag tcaaaaatgt tttgaagctt
    11521 taaatgcagg tttagtcgaa tttagaaaaa acaatatagc cttaaaagaa caaaacacta
    11581 gaacaccaca agctgttata agtatttttg taagtcgttt tgatagactt ttaaatccta
    11641 aggctaagga gcaaaatcgt attggaattt taaatgcaaa tttagcttat aacaatatct
    11701 actcaaaaaa tgaacctaat attcgtgcct tgtttgcaag caccggagtt aaaggagatg
    11761 atctgccaaa agactattat atcaaagaac ttctttttga gaattctgtt aatactgctc
    11821 ctcttgatgc aatagaggca tttaaaggaa aaatgcattt taaaaaacct ttaatgaatt
    11881 ttgaaattta tacagaactt aatcaaatca tttctcaaag tgaacgagaa aaagcttgca
    11941 atgatttatt aagtgatggc ctagagcaat tttgtattgc ttttgaagat attttaaaag
    12001 ctctttaatt aacgtatttt tatcatttta ttctttgaaa gttttaatat ttttgatggg
    12061 atattttcga aaaatttctc atcaagtatt atatcggcaa cacttctagc ccattcttca
    12121 tcaaattctt ttccatgctt gtttgccgaa gatgaataaa aatagccatt tttacttaaa
    12181 aaattcgcat gtttacactc tttcacaata cgaatggcct gattattggg ataaataaaa
    12241 gttgtttttt tagaacgacg tactaaattt ttaaaagatt ttggaattct tgctaaactt
    12301 tttaactcgc aaaatttcgc agaagtgatt aagcaaggct gatttttatc tctacctttt
    12361 aaagcattaa tctcttctaa atttttactt aaaaatccta ccgtagtatc tgtttgagct
    12421 aaataaatca agatttaagc cactcttgca aactctttac atctaggcaa gatttactct
    12481 gtatagcttt aatcgatttt gcacctgcta aagctgatcg taaatttgta aaataaggta
    12541 ttttaaaacg aataatattt tcacgaattt ttttcgtatc gcctttaaaa ctgtgactat
    12601 cgcttgtatt gataactaag tgaatttctc catttttcaa tttatcttca acattggggc
    12661 gtccttctga aattttatgt acaagttcgc actcaaaacc actttctaaa atttccttgc
    12721 aagttccccc tgttgccata agcttaaagc caagctttac atattctgca gcgatttttt
    12781 tggtatattt tttatcctta tcttttaagg agataaatac cacgccttgc tctggaagat
    12841 gattaaacga tgcaatttga cttttcgcat aagaatttgc aaaatccttg cttataccca
    12901 taacttcacc cgttgaacgc atttcaggac ctaattctaa atcacttcca ctaagttttg
    12961 caaatggaaa tactgcttct ttcacgctca tatattttgg agttttaggg cgtaaaattt
    13021 tagtatcaaa attaaccact ttaaaagtat cataaaattt taaagcttct tttaaatttc
    13081 cttgccacat cacacgcgtt gccacttttg ctaaaggaat acccgtagct ttactaacaa
    13141 aaggtatggt acgactagct ctaggattta cctctatcat ataaagctca ttattatgta
    13201 aagcaaattg tatatttaaa agtcctacaa ctcccaaatt taaagcaata tctgcggttt
    13261 tttgtgcaat aaattcttgc attttttcat cgatattgca aggcggcaaa gaacaagcac
    13321 tgtcacccga atgaattcct gcttcttcta tgtgctccat aattcctgca acataaacat
    13381 ctttgccatc acaaatcgca tcaacatcaa tttctgtagc attgtctaaa aactgatcga
    13441 tcaaaacagg gcttttatcg cttacatcca cagcttcttg catatagagt ctaagttcag
    13501 cctcatcatt taccacgcgc atcgcacgcc cacctaaaac ataacttggt cttacaagca
    13561 caggataccc tatatcacta gccttaagaa ccgcttcttc tacgcttgtt gcagtagaat
    13621 tttttggctg attgatacct agctttgtaa taaattcggc aaatttcttt ctatcttctg
    13681 ccatatcaat tactcttgcg ctagtaccta taatcttagc tccaaaagca cttaaacgct
    13741 tagcaaattt caaaggagtt tgtccaccaa aatgcacaat cactccatca ggtttttcac
    13801 gctcaatcac cgctcttaaa tgttcgaaat caataggctc gaaatacaaa atatcacttg
    13861 tatcatagtc agtcgaaacg gtttcaggat tacaattata cataatagtt ttaataccca
    13921 tatctttaag cgcaaaagaa gcatgtacgc aagcatagtc aaattctata ccttgtccta
    13981 tacggtttgg ccccccacct ataatcatca cttttttttc ttttttatcc ttagcatcgt
    14041 ttttactttg agtgagttcg cttacattga tacttgaata aagataagga gttaaggctt
    14101 caaattcacc cgcacaagta tccacttcac taaattctgc gatgattttt tgcttcattc
    14161 ttacataata aatatcattt tggcttaatt ctaaattatc tttcaaattt acaagcaagg
    14221 ctatcatttt atctgaaaag cccatagttt ttgcttttct caaaagagcc ttattgttta
    14281 aaatatccat atcaatttgt tcttcaaaat ctacaatttc tttaatctgt gttaaaaacc
    14341 aaggatctat tttacaaagc tcataaagtt cttctacgct aaaaccttcc ctaaaagctt
    14401 gagcaacata aagtaaacgc ttttcattgg cattgcgaat tttaaaaaca agatcatttc
    14461 tatcttcaaa ttttacccta tcaaaaccac ttaaagaacg ctcaagcgaa caaagtgctt
    14521 tttgtatact ttctttaaaa gtgcgtccta tagccattac ctcacccaca cttttcatag
    14581 ctgtacctaa agttgtattt gctcctggaa atttttcaaa ggtaaagcga ggaatttttg
    14641 ttacaatata atcaatcaca ggctcgaaag atgcaggagt tcctgtaata tcatttttaa
    14701 tctcatctaa gctaaaacct actgccaaaa gtgtcgcaac ctttgctata ggataacccg
    14761 ttgccttaga agctaaagca cttgatcttg aaactcttgg attcatttct ataactatca
    14821 ttcttccatt ttttgggttg atagcaaatt gcacattact tccgcctgta tctacaccaa
    14881 tttcacgcaa aatagcaaaa gaagcattac gcataacttg atattcttta tctgtcaaag
    14941 ttaatgctgg agctattgta atactatctc ctgtatgaac tcccatagga tcgatatttt
    15001 ctatgctaca aactatgata caattatccg ctctatcgcg tataacttcc atttcatatt
    15061 ctttccaacc taacaaactt tcttcaatca aaatttcatg aataggtgat aaagctaaag
    15121 cagtattggt aagttcttta aattcgtcca tattgtaaac cacaccactt ccagcacccc
    15181 ctaaagtata agaagcacgg atcatcaaag gaaagtcgat ttcatctacg gcttttaaag
    15241 cttcgtcata attatacgca tacatcgatt ttggcaaatc catgccaatt tttttcatac
    15301 attctttaaa aacctgacga tcttcgcctt ttttaatcgc ctcaggattt gcgcctaaaa
    15361 atttcacatc tcctaaaagt ccgctttcat aaacttccat agcaacattt aacgctactt
    15421 gtccacccat agttggcaaa attgcatcaa ttttttcttt tttaataata cttaaaatac
    15481 tttcttttgt tatgggttct atataagtcg catctgcaaa ttcgggatct gtcatgatgg
    15541 ttgcaggatt tgagttgatt aatactacac gatatcctaa ttcttttaaa gtctttgcgg
    15601 cttgagttcc agaataatca aattcacaag cttgtcctat cacaatagga ccacttccta
    15661 taagtaaaat gcttttaata tctgttcgtt ttggcataaa ttttcctaag agcataaatt
    15721 tgggctgatt ataacaaaaa ttagttttat aaactttgaa attatcgata taattttaaa
    15781 aaataaacac tctgctttta atctaggaaa taatacataa agaaatttaa gattttttat
    15841 aaaattctca ttcaattata aacatttatt tgataattta acaaaatttt tagcattaaa
    15901 caaagttata ataattagca aaaatataga aaatttttaa aaagtctaat ccttgactta
    15961 taaattatca actacatata aataagcagg aatactaatc ttaacataag gctttacttc
    16021 tacactttga tacatatctt catcattaac tctattcaca ataccgacag gtatatctga
    16081 aaagaaaata ttatcaagtc cacttgttaa aatttcatct ccggtattaa tttttgccca
    16141 ttttggaata aatttaacca caatcctgcc atcttcaccc tggattaaac ctggagcttt
    16201 ggattttcct atataaacag aaaaaacaca ctgatcatca ccttgtaaaa gagccattgc
    16261 tctaccattt ttattaatag ctatacctgc agtatatcct tgatatatca aaccacggtt
    16321 tttaccaacg ggaattttgc tccaatctaa ccataatttt ttataatcat tcaattgaac
    16381 ataagaaata actctagtta aagaaacttg aggtaaatat tttgtagaat tttgatcctc
    16441 taaaatacga tttaattgat ttgcaaaact agttaccttt acagcaatat cttctaattc
    16501 tttatttcta gcttttagtt gctgaatttg atttgcttga ttaaagtgtt ctgaaatttt
    16561 ttctcccaaa taatctttaa tattataaaa attacctata acaaaatcat taacacggag
    16621 aacattttgc ttaataagtc ctccataata aaaagatata aaaaccaaaa aggctaagac
    16681 aagaacataa aaaatcttat tcttcattgg ttaattgttg caataatgaa atttcctcta
    16741 aagctttacc tgttcctttt gctacagcta aaagcggttc atctgcgata taaactggca
    16801 aacgtacaat ttcacttaag tatttatcaa gaccacgaat caatgctccg ccacctgtta
    16861 aaactacacc attttctact atatcacttg ctaaatcagg cggcatcatt tcaagaacca
    16921 tttttaaagc atcagcaatt tcttttaaat actcacgcat cgcttctctt acatcttcgc
    16981 ttgtaagttc aatacgactt aaaagtccac ttacttgatc gcgtcctttt accaccatag
    17041 aaagctcttt tggaagttgt attgctgaac ctatagtgat tttgatctct tcgcctgttc
    17101 tttcacctat gataagattg tatttttctt ttacataatt aactatactc atatcaagct
    17161 tatctccagc cgtacgaata gactttgaaa tcacaagtcc acccaaagaa atcactccaa
    17221 tctcagtagt tccaccccct atatctacta ccaaatttcc tttaggctct tgtataggta
    17281 aacttacacc aatagctgct gccataggct cttcaatcaa aaatacctct cttgcacctg
    17341 cgcttaaagc actttctctt accgcttttc tttctacttg agttaaacca taaggaacag
    17401 aaatgataat tctagggcgt aaaaaacttt ttctacggtg tgttttttct ataaaatagc
    17461 ggatcatttt ttcagtcata tcaaaatctg caatcacgcc atctttcata ggacgaatag
    17521 cttcgatatt gcctggagtt tttcccacca tatctttagc ttctttacct acggctaaaa
    17581 tttttgcttt ggaaccatac ctttctcttt caactgccac aacagaaggc tcatttatca
    17641 ctataccctt atcttttacc aaaactagcg tattagctgt tcctaaatca atccccatat
    17701 cactagaaaa aaatcctata agttgatcta atatcatttc tatccttttt aacttatttt
    17761 tctttttatt aataatgcct ttgcattgtc tttaacaact tctttggtta ttacaatatc
    17821 atagtcttta tactctggta actcaaacat taaatctacc atcatttctt ctataatact
    17881 tctaagcccc ctagcccctg tttttctctc caatgcaagt tgtgcgatag ctcttagagc
    17941 atcttcttca aattttaaat ttaccccatc aatagcaaaa agcttttgat attgcttaat
    18001 aatggcattt ttaggttcag ttaaaattct taccatatct tcttcattaa gctcatttaa
    18061 agatgcaatc acatgcaaac gacctataag ctcaggaatc aaaccaaaat gaaccaaatc
    18121 atcaggttca attttctcaa gtaaagcttt attttcttct tttgcatcat caaaaaaacc
    18181 tacaacttta tctccaagtt ttctttttaa gatagtttcc aaaccatcaa aagctccacc
    18241 acaaacaaat aaaatatttg aagtgtcaat ttgtataaac tcttgatttg gatgttttct
    18301 cccccccctt ggtggaatat ttaccaaact tccttcgata atcttaagta aagcttgttg
    18361 cacaccctct ccacttacat cacgagtaat agaacgattt tcactcattc tggcaatttt
    18421 atcaatctca tcaataaaaa ctataccttt ttgagctctt tgcacatctc catctgcagc
    18481 ttgtaaaaga cgtgttaaaa tattttccac atcctcacct acatatcctg cttcagttaa
    18541 agaagttgca tcacaaattg ctataggtac atctaaaaat ttagctaaag tttgcgccaa
    18601 taaagttttt ccacttcctg ttggcccaac aagtaaaata tttgacttaa aaagctctgt
    18661 atcatcatct tgaagttcag ctttaaaaag tcttttataa tgattgtata ctccaacact
    18721 aaaaactttt ttagctctat cttgtcctat gacataacga tctaaataag cttttaattc
    18781 ttttggagtg atatctttaa attctgtatt atgactttgt ttaggttctt taaattcttt
    18841 ttcttctcca taaataatac tataagcacc ttcaacgcaa tattcacaaa taaaagcatc
    18901 atcattttca tttgctaaaa ttcttctttg tggattctcc acttcattgc aaaaactaca
    18961 ttttctaggc attattttta cccctataga caggaattcc acgctttgtt tctaatataa
    19021 aatgacacat ttttttaaca ttttcacttt cttgattttc aagcaaattt ttagcatttt
    19081 cttttaagtc tccttgtcta aataaagttt taaaagctct gctaagtcta tctacttcat
    19141 ctttatcaaa acgacgacga atacctacta aatttaaact tctaatactt gcacgatttc
    19201 cttctgctaa acaaaacggt actatatcct gagaaagtgc acttgctcct gctatcatac
    19261 aaccctcacc tactttgaca aattgatgaa taggtgtaag cccgcctaca actgtaaaat
    19321 ctccaagctc tacatgtcct gctaaagttg cattattagc taaaataata ttattaccta
    19381 aaagacaatc atgagcaata tgacaataag ccataataaa agcattatcg cctatacgag
    19441 taaaaccatc tcctttagct gtacctgaat ttatcgttgc aaattctcta atagttgcat
    19501 tttttcctat aacaacaccg cttttttgct cttctttata agatatgtcc tgaggaatat
    19561 cgcctactat agcataagaa aatacacgag aatgatcacc tatagttgta tctgaaagaa
    19621 ttcgagcacc ttgtttgatg acaacattat tacctatttt agcatctttg cttacatagg
    19681 cataagcttc tattacaaca tcgtcaccaa gttgtgcacc ctcttcaatc accgcacttg
    19741 gatgaatttt tttcattatt tatccactat catagcttta agctcggcct ctgcaactaa
    19801 atttccatct acaaaagctt gccctttaaa aatccacata ttaccacgat ttttaaccac
    19861 gctcatttca taatcaagcc tatctccagg acgcacagga tttctaaatt ttgctccatc
    19921 tatgcctgtg aaataaacta ctttactttt tggatccact ttatcttcca tactttcaaa
    19981 agctaaaact ccacctgttt gagccatacc ttctaaaatc aaaactccag gataaatagg
    20041 atgccctgga aaatgtccca taaaaacatg gtcacttata ctgatgtttt tatatcctag
    20101 caccacttct ttaactttta attctgtaat tttatctact agtaaaaaag gataacggtg
    20161 tggtaagatt tcttgaattt gcattacatc tatcattatt aaattaacct tgaaaacaat
    20221 taaaaatttt attatataaa aaaatcatta aaaattatat taacaaaaaa gtttttctta
    20281 ataaatttct taaattttta caagcacctc ttgattatca tgataaattt cactttttgc
    20341 tatcacttca tatcttgaag gtaaaatatt ttcaaggatg ataataggac taagattata
    20401 agttccaaac aatttattac gccatttaat ttctgcttga acacttaaag gtttttttaa
    20461 aaaatcttca aaatttttcc atttgttttt aaaaaatgca ttaaaacgcc aaaattccac
    20521 taaaactatt tcatctttag tacttctata aaagccttct tttaaatttt gttttaaatt
    20581 ttcctcatcc aaagaaaatc ttgtataagc gtttttaaaa tgcgaataaa ataaaatatg
    20641 agatttaacg ggctttttat ct
//
LOCUS       DARBAR010000016        20514 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.016, whole genome shotgun sequence.
ACCESSION   DARBAR010000016 DARBAR010000000
VERSION     DARBAR010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20514
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.016"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..577
                     /locus_tag="SB815_000435"
     CDS             <1..577
                     /locus_tag="SB815_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEG0906204.1"
                     /translation="NFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFYKKSFVL
                     RQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILSKNTKEHLARIDTLYT
                     LTNAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLYIFSLIC
                     CILIVGFIFYYSKKTKEFDLDEGKKAKKQTK"
     gene            630..706
                     /locus_tag="SB815_000436"
     tRNA            630..706
                     /locus_tag="SB815_000436"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:664..666,aa:Arg,seq:gcg)
     gene            complement(709..1158)
                     /locus_tag="SB815_000437"
     CDS             complement(709..1158)
                     /locus_tag="SB815_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906205.1"
                     /translation="MVIFCAALALLLFLGVIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEAAKKKLEFVSA
                     LAANINASAQTVSYLNKELKKIYGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(1174..4419)
                     /gene="ccsA"
                     /locus_tag="SB815_000438"
     CDS             complement(1174..4419)
                     /gene="ccsA"
                     /locus_tag="SB815_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEG0906206.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNENKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQLEPFILMPQNQAVRDAIANILEIPS
                     AKYIAYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGEL
                     FKFIPVQNNPNNVWLAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWIRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVV
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLAFFARRKRNFVGKL"
     gene            complement(4437..5132)
                     /locus_tag="SB815_000439"
     CDS             complement(4437..5132)
                     /locus_tag="SB815_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0906207.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(5119..5889)
                     /locus_tag="SB815_000440"
     CDS             complement(5119..5889)
                     /locus_tag="SB815_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0906208.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAGLIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(5886..6938)
                     /locus_tag="SB815_000441"
     CDS             complement(5886..6938)
                     /locus_tag="SB815_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG0906209.1"
                     /translation="MMVRIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSKK"
     gene            complement(6938..7834)
                     /locus_tag="SB815_000442"
     CDS             complement(6938..7834)
                     /locus_tag="SB815_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG0906210.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(7853..8962)
                     /locus_tag="SB815_000443"
     CDS             complement(7853..8962)
                     /locus_tag="SB815_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG0906211.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            complement(8984..10099)
                     /locus_tag="SB815_000444"
     CDS             complement(8984..10099)
                     /locus_tag="SB815_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG0906212.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLVAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNSPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVDNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(10130..10564)
                     /locus_tag="SB815_000445"
     CDS             complement(10130..10564)
                     /locus_tag="SB815_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG0906213.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(10573..10764)
                     /locus_tag="SB815_000446"
     CDS             complement(10573..10764)
                     /locus_tag="SB815_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HEG0906214.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(10817..11323)
                     /locus_tag="SB815_000447"
     CDS             complement(10817..11323)
                     /locus_tag="SB815_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HEG0906215.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(11332..12363)
                     /locus_tag="SB815_000448"
     CDS             complement(11332..12363)
                     /locus_tag="SB815_000448"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEG0906216.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILKKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(12363..13664)
                     /gene="flgR"
                     /locus_tag="SB815_000449"
     CDS             complement(12363..13664)
                     /gene="flgR"
                     /locus_tag="SB815_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HEG0906217.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDDN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFIAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDK"
     gene            complement(13721..14170)
                     /gene="flgQ"
                     /locus_tag="SB815_000450"
     CDS             complement(13721..14170)
                     /gene="flgQ"
                     /locus_tag="SB815_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HEG0906218.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTDLLRAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            complement(14146..14661)
                     /gene="flgP"
                     /locus_tag="SB815_000451"
     CDS             complement(14146..14661)
                     /gene="flgP"
                     /locus_tag="SB815_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HEG0906219.1"
                     /translation="MKKIYFMLAIAGIFAGCVPSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDENFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(14725..17316)
                     /gene="gyrA"
                     /locus_tag="SB815_000452"
     CDS             complement(14725..17316)
                     /gene="gyrA"
                     /locus_tag="SB815_000452"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HEG0906220.1"
                     /translation="MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKERQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDLQ"
     gene            complement(17357..17932)
                     /locus_tag="SB815_000453"
     CDS             complement(17357..17932)
                     /locus_tag="SB815_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEG0906221.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNSVKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(17929..18573)
                     /locus_tag="SB815_000454"
     CDS             complement(17929..18573)
                     /locus_tag="SB815_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906222.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(18650..20446)
                     /gene="lepA"
                     /locus_tag="SB815_000455"
     CDS             complement(18650..20446)
                     /gene="lepA"
                     /locus_tag="SB815_000455"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEG0906223.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
BASE COUNT         7115 a         3891 c         2442 g         7066 t
ORIGIN      
        1 aaattttatt aaatccattt tagaagattt taaagtacaa aatactcatt ttcaaaacct
       61 tttagaacac aaagaaggta ttatcttaaa aggtggtttt gttaaaaatt tttacaaaaa
      121 atcctttgtg ttaagacaaa aaatcaacaa aaatctaaag caaattaatc ttctaagcga
      181 agctttcaat cttttgctta gtgaacaagc acaatataaa aaacatttaa aaattttaaa
      241 tttatccatc agcatcttaa gtaaaaacac caaagaacat ctagcaagaa ttgatactct
      301 ttatacatta acaaatgcaa ttaaaaatga aaaaatgaat aaaagtattt atcttttaag
      361 tatactttct tctattttct tgcctttaaa tttgatcgta ggattttttg gaatgaatac
      421 taataatctt tttttcaaag atagccctta tggtacactt tatatttttt ctttgatttg
      481 ctgtattttg attgtaggtt ttatatttta ttattcaaaa aagactaaag aatttgattt
      541 agatgaaggt aaaaaagcta aaaaacaaac aaaataagca aaattttgct tattttaaga
      601 atatttatat ataattttaa cttatttttg cgctcatagc tcagctggat agagcatttg
      661 attgcggttc aaaaggccag aggttcgaat cctcttgagc gcaccatatt atttatcttc
      721 tttaattttt cttttagcta atcccatatg ctcgtaagca tcaatttctt ttttgtaaga
      781 tccataaatt ttcttaagtt ctttatttaa gtaacttact gtttgtgcac ttgcattaat
      841 atttgcagcc aaagcagaaa caaattctag tttctttttt gctgcttcat ctaattcttt
      901 agaagttttt gaaccaagtt tatgtgtctg cacataaagt ttggcaagtt cttttaattc
      961 aatatccgtt agtttaacat cggaagcagc aattatcatt ttatctaagt ctgtatcaaa
     1021 ttttttagtc ttttcagcta catgctgctt ttggctagtt ttttgctttt taattgtttt
     1081 tttgccatca cttgtaataa gataagcaat cacgcctaaa aacaataaaa gcgctaaagc
     1141 agcacaaaaa ataaccaaaa aaatatggtt catttaaagt ttgcccacaa aatttcgctt
     1201 ccttcttgca aaaaaagcta aaaccaccat caatgcaaat ccccaataaa cataattagg
     1261 aatttgagcc gcttcgcctg cagcgtaaga atgaagtcct gttaaaaagt aatttactcc
     1321 aaaataagtc ataataataa cccaataagc aaacatactc cataaagcaa acacaaattg
     1381 attacaatat tttggaatca ttctaagatg caaaattgct gcataaacca aaatgctaac
     1441 taaagcccaa gtttccttag aatcccaact ccaatatctc ccccaacttt catttgccca
     1501 aattgctcct aaaaaatttc ctacagtaag caaacaaagt ccaaaaatca ttgccatttc
     1561 attaattctt gtagcctctg taatatttct caaaatatta agattatatt ttccatcttt
     1621 cttaagaaaa cacattaaga acaatgtaaa gataccaagt aaggcacaaa gtcctaaaaa
     1681 tccataacta gcagtaataa cagatacatg aatactaagc caataagaat taagcacagg
     1741 aacaagattt gtaatttgcg gattcatttc gcttaaatgc gcaaccatta atacaacacc
     1801 agataaaata gaagttaatg acaaggctat aggacttttt ctggagaaaa atatacccga
     1861 caaagacaat gcccaagcta tatacaccat actttcatag ccattactcc atggagcatg
     1921 acctgataaa taagcacgaa gtccaagacc tactgtatga attacaaaag ctaaaacatt
     1981 taaaacatat accactttaa atataaaaga gatttttaaa ttcggtacga ccattttaga
     2041 aaaaacaaga atcaagagta aaaaacccgc aattaaatat acaggagcga gtttaacgaa
     2101 aatttcagcc ttattagaaa aaatttccat ttcaaccttg gttttactag gcatgacttt
     2161 atatcctatt ttttcttgat attctttgat aaatttcaag ccttcatcag ctctaatcca
     2221 attaccatct ttaaaagcat tttccacggc actaaaataa ttctgtatta aagccaaaac
     2281 aatatgccct tcatccccct taagagtagt tacagcagaa aaaggtgcaa gccaaacatt
     2341 atttggatta ttttgaacag gaataaattt aaataattca ccactaaaaa ctaaatttac
     2401 aacattagct ctttcatcta gttttataat ttccttatca aaaactcctc ttgcatttgg
     2461 gtttttacga tttgcatttt caacatattt ttgaagttta tagcggttat tctcatcaaa
     2521 aaaatcttta taagcaatat atttagcact aggaatttct aaaatatttg caatagcatc
     2581 acgaactgct tgattttgtg gcattaaaat aaaaggttcc aattgccatt tatctacatc
     2641 aacgagcatg gaaagcataa cagcgttaga attttgaccc ttatagctat cactttgatg
     2701 aattttttct aaaatttctc ttgatagcgt atcaaaaggc accattcttc catctgctga
     2761 tttttgaact attaaagtgg caagagcttt agcatgatta gtatttacca caggtaaggt
     2821 cgaatttaaa tcttgagcaa aagtcttttc agaaccaaaa gataacaata aaataaaaat
     2881 aatcacactt gtatgtttta aagtgtcttt attaattaat cttgccaaag ttctaaatct
     2941 agaatgtgga tttaaaaaat tcataaacat tccaagacaa agcagaaaat aacctatata
     3001 agttggtatt ttgcccggat ctttatttac agataaaaca gtcccttttt catcttgatc
     3061 ataagaactt tgataaaatc tatagccatc ataatctaaa acattattca taaaaattct
     3121 ataatcaaaa ttttcattat tattttttac ggtaatttca cttgcataag aagctggaga
     3181 catagaacct ggataacgat ctaatacaaa atctcttaaa taaatatcaa aaggcaattg
     3241 ttcataagaa agcgcccaag aaataaagaa tttttgatct gcaagttcta tcataatagg
     3301 tttattatat tcaaaaatat aaaattcttt actttcattt ttatagctta attctaattt
     3361 taaagcatta gagccagtta attctaagtt tttattctca ttgcttaagg caaaatcttt
     3421 aaaatgcaat aataaagaat ttttccaatt ttgaggctcg ccaaaagtag aaatcaacat
     3481 agttctaccc acttctaacc aagcagattt aaaccataac caaaaacttt catcttgagg
     3541 tctattggaa ccttctaaag cttcttgcgc atgcaaagaa gcagctttaa ctacaaaact
     3601 aatatcatta atttcataaa gtcttctttc cttagcattt gccttttctc caattttaag
     3661 gtctaaattt tgtccatcta gcatgcttag aaaatgtaag ttttcacttg aacttaaagt
     3721 taaattttca tcaattttta caaaaggtgc tttaacatta tcattcataa aagcaaagtt
     3781 aaccccttct atattcttaa cttcaccttt ttcaaattta acatcaacac cttgagatcc
     3841 tttttgagaa agcatcaaaa ccaataaagg atcagaatta ttattttctt tataagtata
     3901 atgagcattt aagattaaat ctttatattt taatacagct tgatcatcac ctaaattaag
     3961 ttttagttta aaagaattag caaaaggcaa atttcctata taacgatcat taaccgcact
     4021 atagcgttct ccatctttta tagcagaaat acgcaaagaa gtcttagaac tttctataag
     4081 tgaattttga gtatgctctc taataggtaa aataccttca aaaccagcat atcttgtcat
     4141 tgcagaaccc actaaaataa ataaaaaaga aatatgaaaa atcattaaag gtaatttttt
     4201 aagcccaaac attttataac gaaacatccc gcatagtaaa ttaataccaa gtaaaagttg
     4261 tatatattca aaccaaaaag tatcataaac cattgcccaa gccgtagggg ttccataagc
     4321 actttcaata aaagttgcca aagcacaaaa aagcgcaaaa agcaaaaaca atacaaccga
     4381 aactcttaaa tcccctatgc tttttattat atttttcatt ctttttcctt taaattttaa
     4441 agccctaaat atttctttct aatctcatca tcacctatta aatttttagc ctcgttttcc
     4501 attacaatgc gaccattttc caaaacataa gcataatcac ttatttttaa tgcagaataa
     4561 gcattttgct ctaccaaaag aatagttata ccctcttctt ttaaacgcac aataatatca
     4621 aaaacttcac ccacaatctt tggagcaagt cccaaagaag gctcatccaa catcaaaagt
     4681 tttggttcac tcattaaagc ccttgaaatc gcaagcattt gcgcttcccc tccactcaat
     4741 gttccagcta aagcatgctt tttacttgca agtcttggaa aaagtttata catttgctct
     4801 cttaaatgct cataattttc agcattatta aaagcaccta tttttaaatt ttcctctacg
     4861 cttaaattaa taaaaacacg ccttccttca ggaactaaag ctataccttt ttgaactaaa
     4921 gtatgagtta aatgcctttt agtatcataa cctaagaaat taacctcacc agttctttta
     4981 actgagttta aaagcgcatt taaagttgaa gttttacctg ctccatttga acctataaga
     5041 gaaacaatat gacctgtttc cactttaaaa tcaatccctt taacagcttc aattaatcca
     5101 taataaacat gcaaatcttt aactattagc atcaaaatcc cctaaatacg cagcaattac
     5161 ttctttatga tttacagcat cgcaaagttt accttcaaaa attgtttttc cataatcaag
     5221 taccaatacg cgatcacaca atttatttac aaatttcata tcatgttcta taagcaaaac
     5281 gctaatttta taatcttttc gtaatttaaa aatgagccca gcaagttcat cactctcaga
     5341 gctattcatc ccagcggctg gctcatcaag caataataat cttggttgag tagccattgc
     5401 tcttgcaatc tcaacttttc tttgttgtcc ataactcaag ctagtagcct tttcataggc
     5461 aaattctgca ataccaagtt cttctaatat tgcataagcc ttctctttaa atacttgttc
     5521 tatttttcca aaacgcccta aatgcaaaaa ggcttcaaaa atattatatt tcatttgttt
     5581 attaaaacca ataagaacat tttcaagcac attcatgctt gaaaaaagcc taatattttg
     5641 aaatgttcta gctattccta aatgcacaat cttatgaggt tttaagtgat caattctttc
     5701 tcctagaaat tcaaccgaac ctgaactagg tttatagtta cctgttataa tattaaaaag
     5761 agttgttttg ccagccccat taggtccaat taaagcaaaa atttcaccct cattgatttt
     5821 aaaagaagtt tcattaatag ccttaacact accaaaactt tttgaaattt gttttaattc
     5881 caaaatcatt ttttgctcct tttaaaacgc tttttaatcc ctctaatcac atcactcaac
     5941 tcataataac ccattatgcc ttttcttgca aaaagcatta ctaaaatcag aacaatagaa
     6001 aaaacaacca ttctaagccc tggcgttgat tggatatcaa gatttaaaga atctattttt
     6061 atatttaact catctaaaaa tctaagccac tcacttccac caataaccaa tatcgcacct
     6121 ataatagcac ctgtagtaga accaagtcca cctaaaacaa taataatcaa aagctgaaaa
     6181 gtaagtaaaa aatcaaattg agttggagat acggtagtca acagacaagc taaaagtccg
     6241 ccacctacac cttctaaaaa tgctgaagtg ctaaaagcta aagtttttat ccaaaaagta
     6301 tttattccca tagcgcttgc agcatcttca tcatctctta tagccttcat tgcacgacca
     6361 tatttagaat aaactatatt taaaattaaa ataaccgcta caatagcaat accacctgtc
     6421 caatagatcg tggaaaattg tggaatatct accagccctc ttgagccatt agtaatagaa
     6481 ggaaaattaa tagcagctat tttaataatt attccaaagc ctaaagttac aatagccaaa
     6541 taatcccctc tcacgcgaaa tacagcaaaa gccaaaatca gggcaagtaa agatgaacaa
     6601 attccagcca caattaaagc tagaataaag gaatttgaat ggatagctaa aataaaagaa
     6661 ctaggaccat ctaaaaaaaa ctgatcattt tttgcatcag cacttaaaag aactaaagca
     6721 gccgcataag ctccaatcgc aacaaatcca ttgggttcta gtgaaaattg tccagttaca
     6781 ccattaataa gattgtaact cacagccaaa ataataaaaa tagcaatttg attaacaatg
     6841 tttaatccat aatccccaaa aatataagga gaaatgaaaa taaaaataat tgaagcaatt
     6901 aaaaagatta aatgtgaaac cttaattcta accatcatta aaacctactc ttttcaaaat
     6961 ttatacctaa aattcccgta ggcctaaata acaatataaa caccaaaaaa ataaaagcaa
     7021 atgcatcttt aaagcctgat aaatctggaa aaaaagccac aacaacaact tcagtaaatc
     7081 ctataataag tccacccaaa actgcaccta ctacagaacc tatacctcct aaaactgcag
     7141 cagcaaaagc ttttaaacct attaaagttc ccatagtagg ttcaacagag taataatttg
     7201 cagcccaaaa aacaccccca actgctgcca aagctgaacc tagggcaaaa actatagcaa
     7261 taatacgatt tgcatctata cccattaaat ttactgtttg tatatcaaat gccaaagcac
     7321 gaatagctat accatatttg cttttataca aaatccataa cactgctatt aaaataacaa
     7381 atgtaagagc aggaaccatt aaagaaccat aagttgttat cactccacca aaattaacac
     7441 tttcctcaaa ataacttggc ggtgtaaaag ttctaggtgt tgaagtaaaa agcatattaa
     7501 aaagattttg caagaaaaaa ctaataccga ttgctgtaat caacaatgaa attctaggag
     7561 cctgtcttaa aggtttataa gcgattctat ctgtagctat tccaacacaa gcagcaaaaa
     7621 tcattgctaa agacaaagct cctagaaaag gaacatttag attagtcatg caaaaaagag
     7681 ccgcataagc accaaccatc ataatatcgc cgtgagcaaa attaataagt cttaacacac
     7741 cataaaccat cgtatagcca acagcaataa gagcatacat actgcccaaa ctaagtccat
     7801 taacaagttg ttgtaaaaat aaagtagaat ccataatctt tctatttttc ctttaaggat
     7861 tgataatatc tttataattt tgcttctgat ttttaatttc tttaaccact acagaacgag
     7921 ttgcatttcc tgtttgatca atactgataa caccagaaac accttgataa tttttagttt
     7981 ggtgaatttt ttcattgaca cacttactag taagattttc aacgcaagca ttcatagcat
     8041 ttagcattac aaaatacgca tcagcaccca tagccgaaaa atttggaact tcttttgttc
     8101 ctttagcttt ttcataaaca ctgataaatt ctttgcttaa ttttgtagtt ggattattag
     8161 catcaaaact atctgtgaaa atataaccct cgcttgcatc tccagctaaa ctaataaaag
     8221 tttgatcagc aactccatct gcagaaccca taggaatatt taaacctgcg agttttgatt
     8281 gtcttgcaaa taaagaagct tcgctataat aaagcggtaa aaaaataaat tctggattta
     8341 aacttttaac ttgagctaca atagctctaa aatctttatc acctgaatta actcttaaaa
     8401 ttctaagaat ttgaccacca ttagacttgt actgtttttc aaaagctttt gctaaaccta
     8461 aggaatagtc agtgctttga tctactacaa taacagcact tttgtaatta agttttgaaa
     8521 aaacatattt tgctaaagat gaaccttgaa aactgtccat aaaacatact cgagaagaat
     8581 atattttttt atcaagcaat ctatcaccag ttgcagcagg agcgatcaat ggaattttat
     8641 tatcttctgc tacgcgcata acttgcaatg tattagcagt aaccatttcc cctataaggc
     8701 ctataacttt atcttgagaa actaaacgat ttgctccact cgaagattct aatttatcac
     8761 ctttagtatc aataatagca agagaaacct tatctccatt acttaaagct gattgcattg
     8821 aatttgcaag tttaatccct tctagtgcgc tttgtccata tgctgcagta gctccgctaa
     8881 gcggtaaaac aactcctatt ttgacttccg cagcacttaa acttaaactt agaatacttg
     8941 ctaaaattaa actttttttc attctctacc tttattttag taattatgga tttataattg
     9001 ttttataatt ttgtttttga ttttgaattt ctttaatcac aacagaacga atggcattac
     9061 cgctttcatc tatgctaatc acaccaccaa cagcttgaaa atctttagtt tgatgaattt
     9121 tgctattaat acattcgctg ctaagattat caacgcaagc attcatagca tttaacatta
     9181 caaaatacgc atcagccccc atagccgaaa atgctggaag ttcttttgtt cctttaactt
     9241 tctcataagc tgcaacaaaa tcttttccta attgtgtaga tggactgtta taatcaaaac
     9301 tatcagtgaa aattactcca ttaacagcac ttccgccaag atctataaaa gtttgattgt
     9361 taacaccatc tcctgctact aaaagtttat caaaaccaat ttgtcttgct tgtctcgcaa
     9421 ttaaagcagc ttcaggatga taaataggca tataaacaaa atcaggattt aaactcttaa
     9481 gttgagaaac cacagctcta aaatctttat ctcctgaatt aataacaagt ttttttataa
     9541 ttttcccacc attattctta aaagaatttt caaaagctct tgccaaacct aaagaataaa
     9601 cattgctttg atctatgatg ataacagcat ttttaagtcc taaatcctta gatacataag
     9661 tagcaaattt atctccttga aaactatctt taaaacaaac tctacttgca tatttctttt
     9721 tatctagcaa tttatctcca gatgccactg gagctattag gggaattttt ttctcttctg
     9781 ctatagaaat agcttgaatg gtatttggag ttgtagcttc accaataatc ccaaggactt
     9841 tatctgttgc tattaaacga ttaactccat ttgaagtttc aagcttatct ccttttgtat
     9901 ctattgtgat aagtttaata acatctccat ttgaaagttt tggctgtagc ttattagcca
     9961 gttcaattcc gttaaaaaca tcttgcccat aagctgccac agttccagtt aaaggtaaaa
    10021 ctactcctat attaatatcc ttagcatata agcaatttac catagttaaa acacttaaag
    10081 ttaaagttag ttttttcata gtattccttt taattatagt ttttacattt tattttagaa
    10141 atatattatg ttttgttttt tgcgcaggtt cttcttcaag aagatctttt acttgcaaat
    10201 caagcgcaaa atttccacct ttaatataag caataatatt atctatatcc tcgtggctta
    10261 aatttctagc ataaaaagcc atttgagaag ctgttgtaga actgctacta tcaagagtat
    10321 aacctatcaa agctccttta atatcctcag gagacatatc ttttaaaatt ctagatccta
    10381 taacactctt ttcagcatta tctccatggc aagtattgca tttattttga aaatacaaag
    10441 ccttcgcttt ttccatatca tattgcttat ttgcatcaaa ggtataagta aaaaatgatt
    10501 tcaagttaat accaaaaagc gcaacaacaa atattgaact aataaacaac cagcgtgcaa
    10561 tcatgatttt ccttatttta ttgtaatttc tgtttgtgtt ttattttgat atctatgtgt
    10621 ttttttgttg tatttttttt cttttttaat atcatagcga taacgaacag tccctgaaac
    10681 ttctatatct ttaaagactt catctaacgg agctgcaaaa acaaaatgat ttaaaatcat
    10741 accaattaaa aatatttttt tcatttttat tctttaaaca caaaaaaacg attatatcaa
    10801 aaaaagataa tccttgttaa tgaccacctt tgtgtaaaaa ataaagtcct acacaaagag
    10861 ctaaaatcga tccagcaaga aaagccatat ccacaggagt agcaaatttc atctgtaaaa
    10921 ccctttgaaa gaaatttacc actaagacca taatgataac ttttgcaagc ttgtctttta
    10981 attgatctaa gctatgcacc tctaaaacct tgctttgttt tgtttgttta aattcttcta
    11041 tttcgctgat aaaaagctca taaactccaa aagaaaaaat aaacaaaact aaagccataa
    11101 gataaagatc aacagctcct ataattaaag ccaccacatc ctcatgcaaa tcgacattag
    11161 aacctgcatc aaaaaaataa ttataagtat aaaatataac ttttaaaaca tcataacttg
    11221 caataaaaaa caatacaaaa gctccaatta aaccaaaaat tacgggtaaa attgtaacaa
    11281 tacgacttct aacaagtaaa gattcaaata ttttctctaa catttttttc cttatttatt
    11341 ttttaattct aaccattttt gcgcaatacg cacagcattt gttgcagcac ctacacgaat
    11401 ttgatccgcc acacaccaaa gatggagtat ttttttatca tacacatcag cacgaattct
    11461 tcctacataa gtttcattag tatcgctagt cattaaaggc atagggtatt ttttattttt
    11521 aggatcatct atgacaataa cacttggtgc tttttttaaa atttctttag ctttttttac
    11581 atctatttct ttttcaaaat gcatagtaat ggcttcgcta tgacttctta aaacaggcac
    11641 tctaacacaa gttgccgaaa cttctaaatt tttatgtaaa attttttgag tttcattgac
    11701 cattttaagt tcttctttag tgtaatcatt atccataaaa acatcaattt gtggaataag
    11761 attaagtgcc aaagtataag gaaaagtttg aggttcaaat tcatcaagtt taaaagcaaa
    11821 aaaactttgc atagcttcaa ccaattcttg cattccttct tttcctgctc cacttgcagc
    11881 ctgataggta cttacatcaa cacgctttaa attaaatgca tcatttaaag gttttaaaac
    11941 ttgcaccatt tgtatagtag aacaatttgg attagcaata atccctgttt ttttccaatc
    12001 tttaatatcc tcaggattgc attcaggaac caccaaagga acatcttttt ccattctaaa
    12061 atgacttgta ttatcaataa caacagcacc agattctact gcaaatttag catatttttc
    12121 actcacactt ccacctgcgc taaaaaaagc aatatcaata ggattttctt taaatacatt
    12181 ttcggtaagt tctttgactt tataagcttt gcctttaaat tctacttcac tacctacact
    12241 ttttgcactt gctaaaggta aaatactttc cactgggaaa tcaagttcat ctaaaacatt
    12301 taaaagctct tccccaaccg caccagtagc acccacaatg gctatttttt gtttttttga
    12361 cattacttat cctttatttg atatttttta attttttcat ttaaaatttt tatatccata
    12421 cctaaaattt gagaagcttg atccttgtca taatctacac ttaaaagaac ttcacaaatc
    12481 aattcttttt ctaaattctt tacatctttt tttatacttc tagcttctaa gaacaaatct
    12541 tcacttgaaa tttcatcatt ttcacttaaa atacaagctc tttgtacaac ggatattaat
    12601 tctctaatat taccaggaaa atcatattca agtaaagcat ttttagcttc ttggctgagc
    12661 tgtttttcct taaaatcata ttctttacaa gtatcttcta aaaccttttg agctatacct
    12721 aaaatttctt ctttacgctc tcttaaaggc gggatattaa taggaacagt gtttaaacga
    12781 taatataaat ctgaacgaaa ttcgccattt tttatttttt catctaaatt tgcattagtt
    12841 gcactgataa ttcttacatc tattttgatg ctttttgtac ttccaagtcg tgtgatttct
    12901 ttttcttgca aagctcttaa aagtttagct tgaatttcat aaggcatttc accaatttca
    12961 tctaaaaaca aagtgccctc attagccatt tcaaaaagcc ctattttagt tgcattagca
    13021 tcagtaaaag cacctttttc aaaaccaaaa agctcacttt caatcaaatt tgcaggaatg
    13081 gctgccatat taatagcaat aaaaggctta ttagagcgtt tagaatgggt gtgaatataa
    13141 cgagaaaata cctcttttcc tactccactt tctccaaaaa acattacaga ggcatcagtt
    13201 ttagccgctt tttgacttaa atttaatgtt ttttctaaat taggagaagt tgaaaaaaaa
    13261 tctttatttt cttctttttt ttcatttttt ttgctttttt tatcggctgt tttttctctt
    13321 atgattttag cacgcttaat agcctcgact aaagtatcaa catcaaaagg cttggttaaa
    13381 aaatctttta ctcccaaacg aaccgcttct atagcacggc ttaaagtagc atttcctgtc
    13441 ataataataa aatcatattt attttcacag gctttaacaa attctatgcc atcaattcct
    13501 ggcatattaa tatctgtaat aatcaaatct gtattatcat ctattttttt taaagcttca
    13561 gtggcagatt tataagattt aatattaaat tcttcatact ctgctaatgc aatttctaag
    13621 gatttgcgca tattaatatc atcttctact atgactaaat tcatcctaag ccttttaaaa
    13681 aatttctact atagtatcca atttgcgctt aattttgaat ttactttttt ttaagataat
    13741 aaattatcgc attttgttcg ccaaattcta cggtaaaacg caagggtaaa attttaacat
    13801 aagtttcact ttgagcacgt aataagtcag tattaacaat atccttaaca ctgattctag
    13861 ctcctataaa gcaatcgctt aattcatctt tatgagaatt taaaaaatta aatttaattg
    13921 tttttggcat attatcatca atcaatccta aagaagttcg aggtaaaact tttaaatctt
    13981 gatcactata agaaatttca catacccatt gttcttcaac attttcgctt tgcgtcattg
    14041 ctaaggataa attttgattt tgatgaaaga gaatgaaatt tttactagaa agctctgccc
    14101 aaaaaataaa ttcatcttgg gcaaaaagct taaagctaag aaagattaat aagcaaacaa
    14161 ttctttccac ttgtctgcat cgattttaag ttctaagttt actctataaa gcccttgatt
    14221 aaaattctca tcaataatac ttgcattttt tatcaaacca tttacttgcg cagtaatagt
    14281 tgaacttcta agcattgcat cttttacagt gtctttacca ttcactttca caccataaag
    14341 tttacttgca agctgtctgt aagcatctgt aatcgctgct ctttttgcta aagctagagc
    14401 ttgagcagta gaaactgtat tcattggagc aattccttca ccaactgctg taaaactaag
    14461 ttccgtttcg ctagcatctg gagccaacat tttttcttct ctgataatat cacgcacatc
    14521 atctttatcg actttttgca cgataacatc ttgagatgga gcagtgctat ttgcacttga
    14581 atttttagtt gcactgtttg cacttggtac acaaccagcg aaaattcctg ctattgctag
    14641 cataaaataa atttttttca tttttacacc ttcaaaatat tgtaattagt aaaataaaaa
    14701 gcaataagcg ttccaacttt aaacttattg caaatctaaa ccaaagtttt catcgcttaa
    14761 ctcatcctcg tcattttcct ctttaggaca cttagcgatg ctaaccacct cgtcattttc
    14821 cacattaact acaatgacac cactcgtatt acgccctgct tttctaatgc tttgcatatc
    14881 aacacgtatc atcttacctg aacttgtaag agccattaaa tccatagttt catctactat
    14941 aactacgcta ataagatctt tggttttttc tgtaagtttc atacaaatta cacccttacc
    15001 acctctgctt tgcaatctat attctccagc attggtgcgt tttcctatac cttttgcact
    15061 tatgcttaaa atttcttgct catcattttc tataacaact gcacctacta attcgtcatt
    15121 tttctcttta aacttaatag ccgtcacccc acgacttaca cggccgattt cacgcacttt
    15181 agcaagtggg aatttgatac acataccttt tttggttact gcaaagagca ttttaccttg
    15241 tgtgcttaca ctttcttcat tttcaagatt ttcatcatct aaattttcaa tttcttgatt
    15301 ttctaaattt tcttcaccac cagtggcaaa aatttcatct tcatctcttt gaacaataat
    15361 agcagttacc aactcatcat tttcatccaa gttgatcgct ctaactccta cacttctgat
    15421 attttgatat tcactcaaat ttgtacgctt tacaatacca tttttagtaa agaaacataa
    15481 agatttgctc tcatcaaaat ccgtggttgg aataatagcc atgatttttt cttcagcttg
    15541 taaattgata agatttacca ctgcttttcc tttagccgtt cttgagcctt caggaatttt
    15601 ataaacttta agccaataaa gctgtccacg atctgttaca aacataagcg tatcatgtgt
    15661 atttgccgta aagaaacttt ctataaaatc atcatcataa gtcgtaacgg ctaattttcc
    15721 ttttccacct cgtttttgtt tttcatattg tttactaggc acacgcttaa tataaccacg
    15781 atgtgtgata gttacaacca tattttcatt aggaatcaaa tcttcaatat caatatcatc
    15841 gtaatcatct tcaatttgag taatacgtgg cacatcaaat ttacttctaa tttcttttaa
    15901 ttcatcgcga attaaatttt caagcaaggt ttcacttttt aaaatttctt caagtcttgc
    15961 aatttctttc attaattctg caagttcatt ttcgattttt tctctttcaa gtcctgttaa
    16021 acgaccaagt ttcatatcta aaatagcatt ggcttgaagc tcactaagac caaatttagc
    16081 tactaaagaa tctcttgcgg tattattatc agaactattt ttaattaaag caatcacttc
    16141 atctatatta tcaagtgcaa ttttaagacc ttctaaaata tgagctcttg ctcttgcctt
    16201 ttgaagttca aaaatcgttc ttctaataat aactgttttt ctatgagtta agaaaagatt
    16261 taaaagttcc aacaaagaga aaattttagg ttctttatta tgaattgcca acataatcac
    16321 accaaaagta ctttccatag tggtagattt aaatagatta tttaaaacaa tttcactcat
    16381 agcctcacgt ttaagctcta taacaacgcg gattccttct ttattgctct catctcttac
    16441 ttcagatatt ccttcaattt gcctttcttt aacaagctct gcaatctgct ctataagcct
    16501 agctttattg gtttgataag gaagctcatc gataacaata acatctttat ttgtcttttt
    16561 ttcaatatga gttttagctc gcactttcac gcgaccacgc cctgtgcgat aagcttctat
    16621 aatacctttt ttaccataaa ttattccacc tgttggaaaa tctggacctt tgataaactg
    16681 cataatctct tctaggcttg catctttatt atcaagcaaa tataaaagtc catctatcaa
    16741 ctcatttaaa ctatgaggtg ggatgtttgt cgccatacct acagctatac cacttgaacc
    16801 atttaataat aaatttggaa ccctagaagg taaaacatca ggttcgcttt ctgaaccatc
    16861 ataatttgga acaaaatcga ccgtatcttt atctatatct tttaaaagct catgagaaag
    16921 tttactcatt tttgcttcag tataacgcat cgcagcggca ctatcaccat ctatagatcc
    16981 aaagttgcct tgtcctgtaa tacttggata tctcatagaa aaatcttgag ccattctaac
    17041 caaagcatca taaactgctg tatctccatg tgggtgataa cgacctataa cagcacccac
    17101 tatacgggct gatttgacaa aatctgttct actttttgcc tcatcatttt gcatagcata
    17161 taaaattctt ctatgaacag gctttaaacc atctcttgcg tcaggcaaag cacgacctat
    17221 aataacactc atagaatagt ctaaataact actttttata gaattttcta tatctacaag
    17281 ttcaatatca gaatctttgc taaaaatatt ctccataaaa atccttctat tagttcaaag
    17341 ttttgattat agcatattaa acttttgcat cagctaaaac aagagcaaaa agtacagaaa
    17401 ttttattttc ttctaaaact tttttagctt ccaaaaggct agaaccagtt gttacaatat
    17461 catctactaa aattacaggt tcgtgaatgg tttttaagag tttgtaattt cttttatgtt
    17521 tttgacgaaa ttctaaactt tttccagaat atttcacaga attttgtgct tttaaaacat
    17581 taaaaacagg ttttacaaat tttgttttaa gatatctagc taaaatagca gaatgtgaat
    17641 aaagcatatc ttcaacctta tcatctaaag ctataacatt aattgtcatt ctaggatcaa
    17701 aaaaatcttt aaattttgca aaacttaatt tagcaagcat tttataaaca aaataaccat
    17761 aaaaataatg tttagagtga agcaagtgtt gtatttcatg gtatttataa aaagaataga
    17821 ctttgaaatt attatcaagc tttcttacat ttaaggaaaa ttcagaaagc tctagctcgc
    17881 ataattcaca aaagcagagc agagcaaaag ctccgcaatt tatacacctc aaagttcaga
    17941 gattaaacta gctgctttat ttgccatttg ttttattaac aaatgagtat aaaaagttgt
    18001 ttcttttaaa tcatcaaaac cttgtacatc ttgcttggtg cggattgtaa atttcttatt
    18061 tttatttata tcactaactt gtaaaactcc tactagtttt gaatgtaatc ctatagcatc
    18121 ttgagttgct ccataagata taaattctaa atcaatctta ctcacataag gtgaattttg
    18181 atcgttattg tcaagcacaa ctattcctct agcttcaagt tcttgtttta aataagtata
    18241 aaataccgca ttaaaattca catcgacaaa taactttttc cctttagcat ttaaaacctt
    18301 ttgcccttct tttaaatcat aaaatctatg taaataaacc tttttcaaag caataccagt
    18361 gtctaaagtg cgtttattgg cacaacattg aattccaaca tcgctaatgt ataaaagccc
    18421 tttaatcttt gcttcaaaac caccaggact ttcacaagaa ctgcattgag aatttttaga
    18481 aatttgatta acttgagcaa aagtatcttg tttagttgca caagcactca aaaataaaat
    18541 aggcactata aaaatcaaaa attttttaaa cattttttct ccttagaaaa ttattttaaa
    18601 attgtattaa aaatacaagc aaatttcaag ccaagtttta aatttatcat caatctatct
    18661 ttaaaacact caaaaaagcc tcttgaggta aatttacctt acctatagct ttcattcttt
    18721 ttttaccttc tttttgcttt tctaaaagct ttctttttct agtaatatcc ccaccataac
    18781 attttgctgt cacattttta cccatggatt taacagtttc tcttgcgatg attttatttc
    18841 caatacttgc ttgaatggcc acttcaaaaa gctgtctagg aactatttct ttcatagcac
    18901 taacaagttc tcttccttta ctttgcgctt tttcattagg cacgataatg cttaacgcat
    18961 caacattttc acccgctacc ttaatatcaa gttttaccaa atcccctact ctaaattcta
    19021 taggctcata atcaaaactc gcataacctt ttgttaagga ctttaattta tcataaaaat
    19081 ccatcacaat ctcatttaaa ggcacatcat attctagtaa aacacgctca ggtgtgatat
    19141 agtccatttt aacctgcact cctcttttgc gatttaaaag agtgattaaa ttccctaaaa
    19201 attcacttgg agtaatgata gtagctttaa cataaggctc ttttatatga tcgattttat
    19261 taacaggagg aagctcgcta ggattttgaa ttttaataag ctctccatcg gtttgataaa
    19321 tttcgtaagt cacagttgga gctgtagcaa tcaaatcaag attaaattct ctctcaagcc
    19381 tttctttgat aacttccata tgtaaaagcc ctaaaaatcc taccctaaaa ccaaagccta
    19441 aggccaaaga agtttcaggc tcataagtaa tagaactatc attaagcttt aatttatcca
    19501 aagcatctct taaatcttca aatttatccg tttctatagg ataaagtccc gcaaacacaa
    19561 aagctttagc cttttcaaaa ccacctatgg cttctttagc tttgtttttt accaaagtga
    19621 tggtatcgcc tacttgtaca tcacctacgg ttttaagccc taaaaccacc acacctactt
    19681 cgcctgattg taaagattga gttttaattg gacttaaagg gtggggataa aaaagatctt
    19741 gaactatatg ttttttatcc gtactcatga ctaaaacttc atcgttttta gcaatacttc
    19801 cttcataaat cctaaccaaa gccaaagcac ccaaataatt atcaaaccaa gaatcataaa
    19861 ttaaagcctt agtaggagct tcatcatctg tttttggtgc agggatttta gtaataattg
    19921 tttctataag ctcttttata cccactcctg tttttgcact cacgcaaatt gcatctttgc
    19981 aatctatacc tataatatgc tcgatttcat gctttacttt ctcaacatca gcattaggta
    20041 aatcgatttt attaatcaca ggaatgattt caagattatt ttcaagcgct atataaacat
    20101 tagctatagt ctgtgcttca acaccttgag aagcatctac tacaagcaaa gccccttcac
    20161 aacttgccaa agaacgactc acttcataag aaaaatccac atggccagga gtatcaataa
    20221 gatttaaaac aaaattttca ttattaaatt tataatttaa acgcactgat tgtgctttta
    20281 tggtgatacc acgctctttt tctatatcca tagtatccat aacttgtgaa ctcatctgcc
    20341 tatcgctaat agcaccacac tcgctaataa tcctatctgc aagagtagat tttccatgat
    20401 ctatatgagc tataatagaa aaatttctaa tattttttac cgacaaaatt tcatcctaaa
    20461 tataaaattt taaagctagg attttaacaa aatttatgtt taaaacaaat aaat
//
LOCUS       DARBAR010000017        20495 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.017, whole genome shotgun sequence.
ACCESSION   DARBAR010000017 DARBAR010000000
VERSION     DARBAR010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20495
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.017"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            9..1172
                     /gene="ftsW"
                     /locus_tag="SB815_000456"
     CDS             9..1172
                     /gene="ftsW"
                     /locus_tag="SB815_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HEG0906224.1"
                     /translation="MVADKRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQ
                     LFFGISGILIMFFISRLDPDKALSKKIILAILIVSFIFIIILPFLPSVLATASGGAKR
                     WIRLGPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGY
                     IYITQNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIA
                     SWWGNIQDAFLPMLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLG
                     FLSEVHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIAL
                     LLLFSFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            1169..2197
                     /gene="murG"
                     /locus_tag="SB815_000457"
     CDS             1169..2197
                     /gene="murG"
                     /locus_tag="SB815_000457"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEG0906225.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(2168..3331)
                     /locus_tag="SB815_000458"
     CDS             complement(2168..3331)
                     /locus_tag="SB815_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HEG0906226.1"
                     /translation="MASFKKIFWINVTIVIIVAFNLRAPITAVGPIIDIIKDKYYLNS
                     TVAGILTSLPLIAFGSISFIVGYFSPIRAIVFGIFLIFLGEIIRSYFGVYGLFLGMLA
                     MGCGIAIANVLLPSFIKEKFPKKMASIMGIYSLVLSISSIMGIALAIPLLSVFDLAGA
                     MFFWAIFSFVALVVYYPQAKNGRFFRIKKKTHKKINLFTNLTTWKITLFMGFQSFLAY
                     SLFFWYVQIVVEKGFDKEFSTSMVLFAQLVAAPVSLFGPLLLGKLRQNLHTFYIAGLC
                     SMYVIAFGMLFIFDSKISIIISAFIMGFPWGGVFGIALLFIAQKSSNAQIAARLSALA
                     QGFGYLIAAQGQWIIGFLHDKFENFSFAILMLVFVGILVNIFGYLSYKSQIIK"
     gene            complement(3339..4190)
                     /locus_tag="SB815_000459"
     CDS             complement(3339..4190)
                     /locus_tag="SB815_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0906227.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYVS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFIAGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMVEGKI
                     FKVELNK"
     gene            complement(4253..5143)
                     /locus_tag="SB815_000460"
     CDS             complement(4253..5143)
                     /locus_tag="SB815_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG0906228.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLAT
                     FSKEFKKCFGQSPKKWLDEKRLQKAKILLKFSKKNINEIANECAFSSVAWFIERFKEK
                     YEQTPKQYQKTKNLYFLSKN"
     gene            complement(5140..5745)
                     /locus_tag="SB815_000461"
     CDS             complement(5140..5745)
                     /locus_tag="SB815_000461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG0906229.1"
                     /translation="MWDKKIIAISDRKCVEIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGIDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(5735..6880)
                     /gene="thiH"
                     /locus_tag="SB815_000462"
     CDS             complement(5735..6880)
                     /gene="thiH"
                     /locus_tag="SB815_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HEG0906230.1"
                     /translation="MQDYMQHLPHMQEIKSEILNKVLTQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLNEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNPLKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFAALLGIDDFRKDALATALHAHFLQQAYSHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(6883..7659)
                     /locus_tag="SB815_000463"
     CDS             complement(6883..7659)
                     /locus_tag="SB815_000463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEG0906231.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKAQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDI
                     ALMARAFSLAVNAGRAAFLAGVASVSEAKASSPLTGFLRD"
     gene            complement(7662..8465)
                     /gene="thiF"
                     /locus_tag="SB815_000464"
     CDS             complement(7662..8465)
                     /gene="thiF"
                     /locus_tag="SB815_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HEG0906232.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDNLESLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDGILICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKLGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(8462..8653)
                     /gene="thiS"
                     /locus_tag="SB815_000465"
     CDS             complement(8462..8653)
                     /gene="thiS"
                     /locus_tag="SB815_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HEG0906233.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGFKIELIALELNGEIVPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(8663..9760)
                     /gene="dapE"
                     /locus_tag="SB815_000466"
     CDS             complement(8663..9760)
                     /gene="dapE"
                     /locus_tag="SB815_000466"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEG0906234.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSNNAFAPVEKEGFIYARGAQDMKSGVA
                     AFVDAAKNADFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(9764..10363)
                     /locus_tag="SB815_000467"
     CDS             complement(9764..10363)
                     /locus_tag="SB815_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEG0906235.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSMDMLYLFLLQFGLLNFLDNVIFMRFLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFLG"
     gene            complement(10356..11057)
                     /locus_tag="SB815_000468"
     CDS             complement(10356..11057)
                     /locus_tag="SB815_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HEG0906236.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSVTGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKITDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLNQTSLFISIGTSGAVLPVGRYASMCEKSILNIYEKDVNLERYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(11100..14921)
                     /locus_tag="SB815_000469"
     CDS             complement(11100..14921)
                     /locus_tag="SB815_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEG0906237.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEYLELEPKWNLGRDKKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEE
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLSKNSKALRVIDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGNQTFGATGTNTIILFLRKKETFKQENHLISQNYSLIKERIEAENLKDNENF
                     YQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKRLKESKI
                     YKESKDKQDLEDKAFLAYTQAIEKDKLLYFCLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLICKAFLKTLSDIPKDLQGYASKA
                     RLIDMMDFEKVEFNKAISLNVKSRDELNPFKNSKYELVRLGEVCDLNKIRNQASATEI
                     EKMNLNSGNVKLLPSSKNYEWWTDEKTAGQFINEGEVITLGVARYANIKKHKGKFVSA
                     NNHILSVKDKSKIIFDFLYILLEICGQKLYKQGQQYPQFDTNIFYSFKIPLPPLEIQK
                     QIVAECEKVEEQYNTLSLSIKEYQNLIKAMLQKCGIIEDNQEYELNSILDKINNLCKI
                     NLDSEFLSSFNKTIKEYALSNPIFKLSIGKRVLNNELLENGQIPVYSANVLEVFGFVN
                     KEILQDYDNDSVLWGIDGDWMVGFIPKNKKFYPTDHCGVLRVDDTKINAKYISFILNE
                     AGKKQGFSRKLRASIDRIKALRVKLPSLEFQDQIADITDKIEKKINEYKIELDRLEKE
                     KEKILQKYLFS"
     gene            complement(14930..17140)
                     /locus_tag="SB815_000470"
     CDS             complement(14930..17140)
                     /locus_tag="SB815_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEG0906238.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTMPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     GSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSSGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSKKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DIKDKQRSLNKTNELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTPKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            complement(17130..17480)
                     /locus_tag="SB815_000471"
     CDS             complement(17130..17480)
                     /locus_tag="SB815_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906239.1"
                     /translation="MSRFFLYLLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(17473..18771)
                     /locus_tag="SB815_000472"
     CDS             complement(17473..18771)
                     /locus_tag="SB815_000472"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEG0906240.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITNELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHYAYTQFLDTAKIRVINAEDEFLKNYKNE
                     SIKLYPSKDIKNCTMCIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYARLGGYK
                     KITAIFEPHRYTRLAANLKEFAKAFEGVDELIILPVYAAGEEPIELDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            complement(18835..20343)
                     /locus_tag="SB815_000473"
     CDS             complement(18835..20343)
                     /locus_tag="SB815_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEG0906241.1"
                     /translation="MLIFGVFVFFLNLKILNLKLKPVNLRLFPLIALNLILIIVYVIA
                     LRGPFKHVAINVQNYSFSEYSVVNDTMLNPIMAFSWALKQYKEEAALKAITPLKAQEL
                     KEKLFDYLHQSPINLKAEKNHPSVFVNLMESFGLNLADFTNTEHNFLGSLDKHFKQDF
                     LFKRFLSSSNGTIPSFANLFFVSPFSNISTSKFQKTYLDLTPIAIYKKAGYKVIFVSA
                     GNGSWQNIKNYLSILGVDEIIDENILMKEYNGAKDSENGYGVADEFLYKKVYDLLQKN
                     PHNTLIIALTISNHPPYKIPQNDLPKLQNIPQTLLNMLPYEKDKQDNIIKAYTYANNE
                     FGKFLDKVKQSSFKDNVIIAATGDHRVREMSIDLNSQKAFAYSVPFYLYIPKDLQDDI
                     YYDKDRVGSHKDIFPTLYALSLNNVKYLSVGGRNMLARPSDEKLEFGINDAVWIDKKG
                     IYSGGKGYYFESNDTLKDMNKAFNLDVYTKDFDKFYRELNLYQLAERLGISK"
BASE COUNT         6856 a         3681 c         2547 g         7411 t
ORIGIN      
        1 taattataat ggttgctgat aaaagattat tttatttaag ttgtatttta atcaccatag
       61 gaatagtatt ttcatactct cttacagctt ttactgttct ttttcttgac tatagcgaat
      121 ttcatttttt tattcgtcag cttttttttg gaattagtgg catacttata atgtttttta
      181 tttctcgatt ggatcctgat aaagcacttt ctaaaaaaat tattttagct attttgattg
      241 tttcttttat ctttatcatc attttaccat ttttaccttc tgtattagca acagctagcg
      301 gaggagctaa acgctggata cgcttaggcc cactctctat ctctcctgtg gaatttttta
      361 aaataggatt gatttatttt ttagcatgga gctatacaag gcgtattgat gatagcaaaa
      421 aagctatcag acacgaggct ttaattcttc tgccttattg catcttagct tctatagtta
      481 taggatatat ttatatcact caaaacgatt taggacaaag tgtaatttct ttctttttga
      541 ttctagcttt agcttttttt gcaggagcta gtaaaagact ttttgctttt ggaactttaa
      601 tcattatgat gataggtata atggtaattt ttagtaacca aagaagaatt caaagaatcg
      661 cttcttggtg ggggaatata caagatgctt ttttacctat gcttcctgat tggctggcaa
      721 atgctttaag agtaagtagc aacagcgagc cttatcaaat ttcacactct ttaaatgcta
      781 tagcccatgg aggaatgttt ggcgaaggcc taggacttgg aacttttaaa ttaggctttt
      841 taagtgaagt gcatactgac tttgttcttt caggaattac tgaagaaata ggacttttag
      901 gtcttggggt tatttgctat atttatcttt ggatgatttt aagaattttt agaattgcag
      961 gaagatgtga agctaaacaa gattttattt tttgttcagg catagcctta cttttacttt
     1021 tttctttctt tatgaatgct tttggtatta tttctcttac tccactaaaa ggtgtagcgg
     1081 ttccactttt aagctatgga ggaagttcaa tgtgggcaat ttgcataggc ataggatatg
     1141 tattaatgat ttcaaaaaag gttaaattat gacaatagct ttaacaggtg gtggaactgg
     1201 aggacatttg gccatagtgc gttgcttatt agaaagtgcg attaaaaaaa atatagaatg
     1261 tgtatacata ggcagtcaaa atggtcaaga taaagcttgg tttgaaaatg aagtacgctt
     1321 taaggaaaaa ttttttttaa gctctaaagg agtggttaat caaagcaaat ttgacaaaat
     1381 cagttcttta ctccacacct taaaactctc caaagattgt agagaaattt ttaaaaaata
     1441 ccacatccaa gccgttttta gtgtaggtgg atacagtgca gctcctgcat cttttgcggc
     1501 tttattctca catttgcctc tttttataca tgaacaaaat tcaaaaagcg gctctttaaa
     1561 tatgctttta aaacctttcg ctacaaaatt ttttagcgcc tttgaaaaag aaattagccc
     1621 ttatcctgta gcagataaat tttttgataa tgctaggatt cgcaaagaat taaaaaatat
     1681 tattttctta ggaggatcac aaggagctca atttatcaac gaactagctt taaatttagc
     1741 accaaaactt caagaacaaa atatcaaaat catccatcaa tgtggaaaaa atgattttga
     1801 aaagtgcaaa aaacattatc aaagcttaaa tatccaagct gatatttttg attttagttt
     1861 aaatttggaa gaaaaaatga aaaatgcaga tctagctata tcaagagcag gtgcaagtac
     1921 tctttttgaa ctttgtgcta atactttgcc cactattttt ataccttatc cttatgcagc
     1981 taaaaatcat caatacttta atgctaaatt tttacaagat caagctttat gtcaaatttt
     2041 tatgcaaaac tctattaatc ttgatgaatt ttttaagtca atattaaaac taaatctaga
     2101 aaatatttct acaagattgc aaaatataac ccaaaaaaat ggcgcagata tgctaatcca
     2161 aaaagcttta tttgataatt tgacttttat aagataaata tccaaagata tttactaaaa
     2221 ttccaacaaa aactaacatc aaaatagcaa atgaaaaatt ttcaaatttg tcatgcaaaa
     2281 aacctataat ccattgtcct tgtgctgcaa ttaaatatcc aaaaccctga gctaaagcag
     2341 aaagtctcgc tgctatttga gcattagagc ttttttgtgc aataaaaagc aacgcaatgc
     2401 caaaaactcc accccatgga aaacccatga taaaagcact gataataata gaaattttac
     2461 tatcaaaaat aaagagcata ccaaaagcga tcacatacat actgcacaaa cctgctatgt
     2521 aaaaagtatg taaattttgt cttaattttc ctaaaagtaa agggccaaaa agagacactg
     2581 gagctgcaac aagttgagca aataaaacca tacttgtaga aaattcttta tcaaatcctt
     2641 tttctacaac aatttgaaca taccaaaaaa acaaagaata agctaaaaaa ctttgaaatc
     2701 ccataaaaag agtaattttc caagttgtta aatttgtaaa aagattgatt tttttatgag
     2761 tttttttctt aatacgaaaa aatctaccat ttttagcttg aggatagtaa actactaaag
     2821 ctacaaaaga aaaaatagcc cagaaaaaca tagctccagc taaatcaaat acactaagca
     2881 aaggtatagc taaagcaata cccataatcg aagaaatact caaaacaaga ctataaattc
     2941 ccattatact tgccattttt tttggaaatt tttctttaat aaaactagga agtaaaacat
     3001 ttgcaattgc tataccacag cccattgcta acattcctaa aaataagcca tatacaccaa
     3061 aataagaacg aataatttcg cctaaaaaaa ttaaaaaaat tccaaaaaca atagcacgaa
     3121 taggagaaaa ataccccaca ataaaagaaa tacttccaaa agctatcaaa ggaagacttg
     3181 taagtatgcc cgctacggtt gagtttaaat aatacttatc tttaataata tcaataatag
     3241 gccccactgc agtaattggg gctctaagat taaaagctac aataataaca atagtaacat
     3301 taatccaaaa tatcttttta aaagaagcca taaaagcctt atttgttaag ttctactttg
     3361 aatattttac cttctaccat cttaggaatc cataaaatat taccttcaat aaatatatct
     3421 gcaggacctt tcatcaaagg aagttcaagt tttacagatt taacattatc taaattataa
     3481 atatatccat ttagattatt tccccaagaa cttaccaata aaccatcttt ataaggaact
     3541 attccatcat aagattcttt ttcattttta attatactga gttcttttgt atttaaatca
     3601 taagccatta caacaccgcc acttacacca tcaggatgat aaccagctat aaaaagctta
     3661 tgtttttttc tatctagata taacccattt ggaccgccaa attttgctaa atcaagtttt
     3721 aataattcat catattgctt agtttttaaa tcaaccttta aaataagccc tgtgccagta
     3781 tcgctaacca aaagcgtatt gtcgtctaat ttttctatgt catttaaaaa gattgcacct
     3841 ttaataggta aattaaaaat ttctttttta gttttaagat caaaaccgcg taaaacatcg
     3901 atatctacca cataaagagt ttttccaatc tccatcatgc cttttggtgc attaagatgg
     3961 gttaaaaatt tatattctag cactttgcca tttttatcaa gcttagaaat aaatccatca
     4021 ttatctttcg ccaaaggttc aagtttttcc cctacattag atacataaac atagttttta
     4081 tctacaaaaa tactttcagg gcttttaaaa ccatcaaatt cttgatattt taattcactt
     4141 gcaccaagca aacttccaag aagcgctaaa cttaaaacat attttttcat attttctcct
     4201 ttatttaaaa atattttcat tgaattatat ttatttagat aaaaaaaatg tgctagtttt
     4261 ttgataaaaa atacaagttt tttgtttttt gatattgctt aggagtttgc tcatatttct
     4321 ctttaaatct ttcaataaac caagctaccg aagaaaaagc gcactcatta gctatttcat
     4381 tgatattttt tttagaaaat ttaagtaaaa tctttgcttt ttgcaacctt ttttcatcta
     4441 accatttttt aggactttgt ccaaaacatt tcttaaattc tttagaaaaa gttgctaaat
     4501 ctaatttcgc aaaattagac atttcattta cgcttaaaaa ttctctacca caatactcaa
     4561 aaagttggga aagatcaagg cgaaattctt ttaaaattcc tgataaaaaa ctaataaaat
     4621 aaatattctt atttaaaagc aaatgtaaaa aaatctcttc aaatttcaaa ctcactatag
     4681 gatctaaaat ttgcgtattt tcttcaaaat gcggtgaaaa actttccaaa attccttgca
     4741 aaatcttatc attttttacc caaaaaattt catagttttg aaacttttga tctagtttaa
     4801 aaaaatcttt atacttataa ataagctcaa ttaaaaatgc attgtcaaaa aaaaataaat
     4861 aagcttcata aactccttta ctaagtccta cattgcttaa agtatagctc ccagctttta
     4921 aaaacaaagt ttcataagag ttaatcttat aatcttttga tgcagtgtgt aaaattttat
     4981 atcctttgcg aacaaaagtt aaaagatgac ttcctacatt aacaaaagta gaatgcgaag
     5041 tatccgtttg tgtatattta gcaaaagtgc aagatttaat ttttttataa ttgacacctt
     5101 ttaattgctt taaatcttct ggtaaagaaa gaattttatt catcgtaaat tttgcctaca
     5161 ttctaaaaga tactttttaa gatctttttc tttcattaaa atttcacgca tgcaaacacc
     5221 tactacattt atatctttaa aattttctat attttgagca ttgataccgc ctatagcata
     5281 aagtggaatt tgactaaatt caagcaagga ttttaaaaaa tcaatccctt taggttctaa
     5341 acccatcttg caagaacttt caaaaatatg ccctacaaaa gcataattta ccttatagct
     5401 catcgcctct aaaagctctt ctttgctatg gactgaagta ccaagtatat gaaaatattt
     5461 tgttaattta ggttcttttc ttagcaaaga aagcggtgcg tgaaaataac gatgtcccaa
     5521 ttttaaacac tccctatcaa aaaaatgcaa aaaacaagtc actttttgct ttgcgcaaat
     5581 gcttaaaact tcttttgcta agtcataata ctcaaattcg cttaaatctt tttctcttaa
     5641 aactatagca tctaccttag ccttagcaag tttttcaatc tgctttaaaa agtctatttc
     5701 tacacatttt ctatcgctta tggcgatgat ttttttatcc cacatagata ctatcgctca
     5761 tcacagcttg taaattggat cttttaagca tagctaaaat ttcatctacg cttctatcat
     5821 ctgaaatttc aaactgctca tcaccctttt tctcaccctt atgctcacct atacccacac
     5881 tcactcctgc actcatttta gtagcaccaa gcttgataac ctcatctcta aaacctattc
     5941 tttcacgact tgaaatggta atgcccgcaa aaggcaaaaa gagcctataa gcacaaagta
     6001 cttgcaaaag gcgtttttca cttacatctt taggatggat tttggcatta ttgataatag
     6061 gtcttaaacg cggcactgaa atagaaattt cagcatgcga ataagcttgt tgtaaaaaat
     6121 gtgcatgaag cgccgtagca agagcgtctt ttctaaaatc atctatacct aaaagtgccg
     6181 caaaagccac tccacgcata cccgctttta aagctctttc ttgagcatta aagcgataag
     6241 gaaaaatgcg tttttcacca gctaaatgaa ttttagaata ttttagagga ttgtaagttt
     6301 cttgaaaaac agtcacataa tcacaaccct tttcatgcaa aattttatat tcatcttcat
     6361 tcataggata aatttcaacg cccacaacct taaaatactc tctagctatt ttacaagcat
     6421 ttgctatata ttctacactt gcaaactccc tgccctcgcc tgttagcatt aaaatttctt
     6481 ctaaaccact tttagcaatg gcttgcattt cttcgtgaat ttcagcttca tttagcttag
     6541 ctcttgcgat tttattacct ttttgaaaac cacaataaac acatttagaa ttacaataat
     6601 ttgacaaata aagcggagta aaaagagaga tagaatttcc aaaatatttt tgcttgactt
     6661 tagcggattt aaaggctaat tcttctatga aatcttctgc tgcacttgaa agcaaggctt
     6721 ttaaatgctc tatgcttaaa tgtgtttgat ttaaagcatt tttaacatct ttagcgctaa
     6781 attgactctc atcatagctt tgaacttgag ttaaaacctt gtttaaaatt tcgcttttta
     6841 tttcctgcat gtgaggtaaa tgctgcatat aatcttgcat aatcaatccc ttaaaaagcc
     6901 tgttaatgga gaacttgctt tagcttcact cacacttgcc acacctgcta aaaaagccgc
     6961 tcttcccgca tttactgcca aagaaaaagc tctagccatc aaggctatat ctttagcttc
     7021 agctatggct gtatttacca tcactgcact tactcccatt tgcatagctt cacaagcttg
     7081 tgaaggactt ccaatacccg catctacaat gataggcaaa tcaatttcat taagcaaaat
     7141 ttgtataaat tccttagcac ataaaccttt attactccca ataggcgctg ctaaaggcat
     7201 gatagccgca gctccagcat cacgcatagc tctagctgcg taaagatcag catgcatgta
     7261 aggtaggggc gtaaaaccct ctttagctaa aagctcacaa gctttaatcg tttcataatt
     7321 atcaggcaat aaatacctac tatcacttat cacttctatt ttgataagtt ctccacaacc
     7381 aagctctctt gaaagccttg caatgcgtaa ggcttcatcg gcgtttcttg cgcctgaagt
     7441 gttgggtaaa agtgtgatat ttttagggat ataatcaagt atattagcaa tttcccctgt
     7501 atttgcacgg cgtaaggcta gagtgataat ctgtgcttta gcttcttcta tagctgattt
     7561 tataagctct agcgaatatt ttccagaacc taaaataaat cttgaatcaa actcgtattt
     7621 gcctattttt aatttatcat tttttaaatt ttcttgcatt tttactcctt atttgctaaa
     7681 agctctaaaa caaggttact ttgatgtcct gcgcaaatat ttacccttgg cgccataagt
     7741 ccatttccta gcttagcacc atttaccaaa tccccacaca catagaaatt tttagcaatt
     7801 tttcttgttt gtatgctgtt gctatcacca tagcccgcaa gccctgaagc gcagattaaa
     7861 ataccatctt tgtaaaatct atgaaaattt tgcgctatca ttgcttttgc gatagcacta
     7921 tcaaaggctt cacaaactat atctatatct ttaaacaaag actctaaatt atcctcatcg
     7981 atttttaaag tacaaatttc aacgctgata taaggattaa tttcgctaat ttgctctttt
     8041 aaagcttcgg ttttaaactt gcccaaatca cttacacgat aagcctgacg atttaaatta
     8101 ctaggctcaa tcacatcaaa atcaatcaac tttaaatacc ccactccact tcttgctaaa
     8161 tttatcgcaa tgtgcgatcc aagtccgcct aaaccacaca ccgccacgcg cccattttta
     8221 agtttatcgt gaagctttgg tgtatgtctt gctctcatca tagcatctag tgcgtctttt
     8281 ggaggtaaag tatttttttc tatacaaaaa agctcatcat tttcatttaa agcgatattc
     8341 tcttttgttg caaaaccatt gataatccat acatcatttt catttttgct gatattttca
     8401 aaaaattcca aacttgtttt aaagtctgta tcaagttctt tgccattgaa ttttactctc
     8461 atcatccacc tcctacaaaa cttacgattt cagctttatc gttttctttt aaaatcaaat
     8521 tttcaaattc gctcttaggt acaatctctc catttaattc caaggcgata agttcgattt
     8581 taaaaccttt ttctttgata aaatccataa atttaagctc ttttaactca agcttttgtc
     8641 cattgataat cattctaaac ctttaaaaat tttctatcaa gtctttaaaa acaaggcaaa
     8701 gtttttcaaa ttcttctatg cttactcttt catcaatagc gtgaattcta tcattacaaa
     8761 ccccaaattc tactaccttt acaccgtatt ttgcaaaata ccttgcatca cttgtaccgc
     8821 ctttggtatt aagctctggc acttcatgag tgattttttg aacgctttca ttcatttttt
     8881 gaacgatttt attatcgata tttgtcaaaa aagcttcgct tgattgtttt agctctaact
     8941 catagtttaa accatgacaa attttttcta cataactttt tacatcttct aagcttgtat
     9001 caggggaatt gcgtacatta aacataagtt ttaaatcatt tggcgttaca ttacataccc
     9061 ccatacctcc acgaatatca gttataacga tttttgaagg actaaattca gcacttccag
     9121 gatcaagatc aaaacccgct aaaagcttta aaaccggtgc aaaatcatgc acaggattga
     9181 tacatttttc aggataagca acatgccctt gttttccacg gattaaaagt tttccattga
     9241 tagaaccacg acgccctatt ttaatactat cgccgatttt tttaacacag gttggctctg
     9301 caaccacggc ataatcaggt aacatatctc tttcttgcat ccattctaaa acagccttgg
     9361 ttccatatat agcctcgcct tcttcatcac ttgttaaaat aagactcagt cttgctcctt
     9421 taaaatccgc attctttgcc gcatccacaa aggctgctac tccgcttttc atatcttgag
     9481 caccccttgc atagataaag ccttcttttt ccacaggcgc aaaagcatta ttactccaac
     9541 cctcgcctgc aggcaccaca tctacatgcc caccaaaagc taaatgctcg ccttcatctt
     9601 taaatttttt agtgagtaaa aggtttttaa tgccttcttt ttctataaaa aaagcttcaa
     9661 aatcactcag ttccatagcg atgaaattta aagctccatc atcatttggc gtaacagatt
     9721 taaattttaa aagttcgatt aaaaattctt ttgcattcat tttttatcct aagaaagttt
     9781 tatataataa attaagagca aaatactcta taattatagc tgaaattata ttgattataa
     9841 aaacaacttt tgcactaaaa acatgactat atcttgccac cacaaaggct aaagcactta
     9901 cccaaaaaag tatagccaca acaagcccta aagtcatcaa ataagcatga tcgctgctta
     9961 aaaccacact tgcagcacta agccaaaatc ctatcacaaa aggatttgaa ccatttaaaa
    10021 aagctccttt aatataactt ttcaaaagac tttctttaaa ttctttatgc tctaaattta
    10081 agctttcttt cttttttctt agcatcaaat acgccatata agttaaaaaa caaaaaccaa
    10141 aaatcgccaa aaaacgcata aaaatgacat tgtctaagaa atttaaaagc ccaaattgaa
    10201 gcaaaaaaag ataaagcata tccatactaa atgctccaag tcctacagct atggaatttt
    10261 taaaagcttt tagtgcataa gttaaaatca aaatatttac aggtccaaaa ggcacactca
    10321 ctccaaagcc caaaaaaact ccacttaaaa aagaatcaaa cattaccatc tttcataaaa
    10381 ttttctatat caagtgcgat tttatcaata gcgcttataa tatcttctat atagatttta
    10441 tcaaaatatc gctctaaatt cacatctttt tcgtagatat ttaaaatact tttttcacac
    10501 attgaagcat aacgccctac aggcaaaacc gccccacttg tgcctatgct gataaaaagc
    10561 gaagtttgat ttagcaaaga ataaagcgta gcataagcag gagcttgctc ttcaaacatg
    10621 actatattgt gtcttaaatc cttacttttg cattttggac attgtttatc tgtgattttt
    10681 tcatagccta tattaaaaat tccttcacat tttaggcaac gaagttcggg caaaaatcca
    10741 tgcaaatgta ctacatcttt acaccctgca cgctctagca aatcatctac attttgcgtg
    10801 atgacaaaaa gatttttacc ccatttttct tttaattgtg cgattttttc atgggcgtga
    10861 tttggcttta cattttgaag ttgcgctctt cttgcatcgt aaaaatcaag tactttttta
    10921 ggattttttc taaaacccgt tacagaacaa acctccatca catcgtattc ttcccaaagt
    10981 ccatcattgt ctctaaaagt tttaagccca cttggagcag acaaacccgc tccgcttaat
    11041 atcataatgt ttttcatcgc taaaccttat aaaatttaca aagtttagcg aaaaatgctt
    11101 taagaaaata aatatttttg caagattttt tctttttctt tttctaatct atcaagttct
    11161 attttatatt cattgatttt tttctcaatc ttgtcagtta tatctgctat ttgatcttga
    11221 aattctaaag aaggaagttt aacccttaat gcttttattc tatctattga agctctaagt
    11281 tttcttgaaa atccttgttt tttaccagct tcatttaaaa taaaacttat gtatttagca
    11341 tttatttttg tatcatcaac ccttaatacc ccacaatgat cagttggata aaacttttta
    11401 ttttttggta taaatcccac catccaatct ccatctatac cccacaaaac agaatcatta
    11461 tcataatctt gcaaaatttc tttattaaca aatccaaata cctccaacac atttgcacta
    11521 taaacaggaa tttgtccatt ttcaagcagc tcattattta aaactctttt tccaatactt
    11581 agtttaaaaa ttggatttga taaagcatat tctttaattg ttttattaaa tgatgataaa
    11641 aattcactat ccaaatttat tttacacaaa ttattaattt tatctaaaat agaatttagt
    11701 tcatattctt gattgtcctc tataatacca catttttgaa gcattgcttt gattaggttt
    11761 tgatactctt ttatactcaa gcttaaagta ttatactgct cttctacctt ttcacactct
    11821 gctacgattt gtttttgaat ttcaagcggt ggaagtggga ttttaaaact ataaaaaata
    11881 ttagtatcaa actgtggata ctgttgtcct tgtttatata gtttttgtcc gcaaatttct
    11941 aataaaatat acaaaaaatc aaaaataatc ttgcttttat ctttaacact caaaatatga
    12001 ttatttgctg aaacaaattt acctttatgt tttttaatat ttgcatatct tgccactcct
    12061 aaagtaatta cttcaccttc gtttataaat tgtccagctg ttttttcatc tgtccaccat
    12121 tcgtagtttt tagaacttgg taaaagtttt acatttccac tgtttaaatt cattttttcg
    12181 atttctgtcg cactagcttg atttctaatt ttatttaaat cacacacttc ccctaatctc
    12241 accaactcat acttagaatt cttaaaagga tttaactcat ctcttgattt tacgtttaaa
    12301 cttatagctt tattaaattc cactttttca aaatccatca tatcaataag cctcgcttta
    12361 ctagcatagc cttgcaaatc ttttggtata tcgctaagag tttttaaaaa tgctttacaa
    12421 attaaagtat taagcttagt ttcattttgc ggattgcctc tttcaaaaag tgggctcaaa
    12481 taaggctcgt gcaattcttt taaaccttca tcaccttttc tattactcca ctcataacct
    12541 aaaaatttct tttgttcttt tatatcactt ggagatttta tgattaaaac ttcttgatta
    12601 agacttagac aaaaataaag caatttatcc ttttctattg cttgagtata agctaaaaag
    12661 gctttatctt ctaaatcttg cttatcttta ctttctttat aaattttaga ttctttaagt
    12721 cttttataat cgcttgtttg cctaaatgca ttgcgataat ctttaaaggc ttctagctct
    12781 gcaagtttag aatctaagtt tccatttaaa aaattgctat aaagctcttt atcaaatttt
    12841 ctaaaatcac aatacgcact tagataattt tgataaaagt tttcattgtc ttttaaattt
    12901 tcagcttcta tgcgttcttt aatcaaacta taattttgag aaataagatg attttcttgt
    12961 ttaaaagttt cttttttgcg taaaaataaa ataatcgtat ttgtccctgt tgctccaaat
    13021 gtttgattac ctagctctac aatggcaata aaatcaaaat tttgaaataa tatttctctt
    13081 gtatttttat aaatagaatc tttatttaaa atagaacttg gtaagataat agcagcttta
    13141 gcattatcat ttaaaatttg atttgctcgc tcacaaaaaa agcattcgat agaattattt
    13201 gtttctatgt ttatatcatc gttaaaaagt ttataggtat tcttagattt atcacttaaa
    13261 gtttctaaaa atccttttac agaataaggc ggatttgcta taagcaaatc aaaactattt
    13321 gattctattt gtggttttgc tttttctcct tctaaattat ttgtatttgc taattcaaaa
    13381 gaagcaagtg catcagcgta taaaatattg atttcatttt gtccatacat tgcacttgat
    13441 accttagaaa ccttacttaa gcgatactct ttttcaatac cataaatatt tttataatgc
    13501 tctttaagct catcttctgt tagataacgc ttaagctcat tggcataggt gtttaaaaaa
    13561 tgtccagcac cacaagcata atcaatcacc cttaaagctt tagagttttt gcttaacatt
    13621 tcttgaagcg gtaaagaata cataataaat tcacaaattt gaataggggt aaaaaactgc
    13681 ccttcatctt gcttcatacc tttttgcaaa aaaagttcaa aaagattgcc taaaaattga
    13741 tttgtagagt tttgggtaag cttgtaattt gcaaaaagct ctactatttc ttttaataca
    13801 agtgcatttt ttaagaataa ttctttatta tgcacttcta aaaatgcaaa atcattattt
    13861 gaataaaatt ttaattcttt gatgtaattt tgcattactt cttttaaagt ttttatcttt
    13921 aattgcttaa agtctttttc tatatcttca ttagatacaa aggtaatttt ctctcctaag
    13981 aattctttca tagcttcttt ataaagccac attaatctat cttgcatatt tgcataagta
    14041 tctgccatta caccaaaata tccaaatttg agattgttct tattaaaagt ttcatcataa
    14101 attttgcaaa gaaaaatatt tacaagttta tcaaaggcat tttccttgcc tgatatatta
    14161 tgcttgcgta aaatttttgc aaattcgtga tatttacctt cttctttaag ttccttaaga
    14221 ttatcaaaag ttggagtaat ttctaaaatt ttataagcat tgacattttc ttcaaaaata
    14281 ccttgtttaa aatattgcag ttcataactt tctttccaag ttttaaaaag ttctatattg
    14341 ttattagatt ttttataaga attttgtaat tccttttctt ttagatattc ttcgttatcg
    14401 taagcttgta tgatgtaatt tttatattct aacttatcgc taaaatcact tgtataaaga
    14461 caaagatatt ttacaccttt ttcttgctga aaataagaaa aaagctgccc gccatcttct
    14521 tgcattctat tccattcttt tataaattca ctatttttag aatctgtggt tttacattct
    14581 ataatcaaat aaggattgtt ttcattatcc tttactaaaa tatcagcctt accacctttt
    14641 ttatccctgc caagattcca ttttggctct aactctaaat attcagcctt gtaacctttt
    14701 tctaaaagtc tatgcacaca ttcaaaaact acaaaatttt cagggtgtga aaaattagaa
    14761 gtagttttat cgtgaatttt tatttctttt gggtaattaa tactttggtt tttataatct
    14821 attaaaagag tgtaattatt gattgttttt acataatttt catttttatt tttaaagcct
    14881 aagttttcta gaacttgttt taaattatct tttgtaatca tttatttcct tataatctca
    14941 ccaccttagc accaaagcca ccttgattga tcggtgcgtc attaaagccc ttgacacttt
    15001 tatgagtttt caaaaactct cttacagcaa aggcaagctt tcctgttcct ataccatggt
    15061 aaactaaaac ttcatcaaag cctgcaagca aagcatctga aataaattta tcaagccttg
    15121 aaatagcttc atcactccta agcccatgca aatccaagct aacgctaaga ttagtcggtt
    15181 ttgccacact aatgcttgtt tttggactta ttttaggtgt aggagtgctt tttttaagca
    15241 gttttaaagg cacacgaagt ttgatcccat cactttcaac catagcatcg tttttagaaa
    15301 tgcttatgat tttaccctta attttttcat attttacaaa atcccccaca cgcaattctt
    15361 cgttttgctc catacttggc aagatgattt cttttttaag ttcattggtt ttattaagac
    15421 ttctttgctt gtcttttata tctttaagct gtatggtttt tttagcttct tctatggctt
    15481 tgtgaaattt aaattctaaa tttctcaaac tcgtacgaaa ttcttgttca tttttttctt
    15541 tttgctcttt taaagaaagt aaaatttcat cgactttttg ctcttttttc tcaacatttt
    15601 caagcttagc ttttagttct aattcaagat tgatattttt acccacaagc tcttctaaat
    15661 tttctttatc ctcgccataa agctttttag cctcgctaac taaattcggc ggaatctgat
    15721 aacgcaaagc agtttcaaag gcataagatt ttcctatagt accttttaaa aactcatatt
    15781 ttgggcgtga aagctcttca tcatataaag cagcaatgag ttcaacttgc tcattctttg
    15841 ctaaaagcat ggcaaggcgt ttgtggtgcg tggtgatgat gattttaaga ttattagcta
    15901 tgagttttga aattaacaca ctatacaaac aagccgcttc ttcaaaatct gttccaagct
    15961 ctatttcatc gatacctaaa agcaaatttt tcttagaaaa aagcctggaa aagtgcaaca
    16021 ttcttcctgc aaaagttgaa atgtcgtttt taacattttg cggatcttct atgatggcat
    16081 caaattcttt aaaagtacca attttacttt cacttgcttt gatatgcata ggcaaaagat
    16141 gtttagctaa aaatgctgca cttagcatgg attttaaaag catggatttt ccgcctgcat
    16201 ttacccctgt gatgattaaa acttgttttt taaattccaa actcacgctt tttggatttt
    16261 ttaaagcagg atgagcgaaa tttttaagaa ccaaatctgt actttgatca cacaaaacaa
    16321 attcaaaatc ccttttttta gcaagcaaaa ccctagcact ataatgatca aaaagatcaa
    16381 aggctgtatt gataaatttt aaaaaaggta ggttttttgc taaaaaagct gagaaatttt
    16441 tagcgtattc ataataaatt tcttcttttt gatttttgat tttttctata tcattttgca
    16501 aattttcaac acttaaaggc acgatataaa agccaccgcc actacttcta cctatgattt
    16561 ttgctttaat agcgtgatta aacccgcctc ttacaagcaa ggcttcaaga ttgtttataa
    16621 gatggatttg tgtatcgata agataaggca ttaaagcttt tgtatagcaa aatttcttaa
    16681 actcagctat tatgctttca ttttttaatc ttagagcggc attaagattt acaagtcttt
    16741 catctaaact ttcttttaat tctcctttct catcgaaatt caaacaaagc tccaaagccc
    16801 cgctaacaaa ttctatcttt tgtagccaag agcctaaatt tgttcctagt tttatttttt
    16861 ttaacttttc aaaataacga aaaattttta caaattcaaa aatttcatct aaatgtaaaa
    16921 ttccttgctt acttaaatgt actaaggctt tatcaagatt gctaagctct ggcatagtag
    16981 gaaattccac ctcacaaagc tcatgtatgc gtttaaaatg gagattagaa tctccttgca
    17041 aaaaaatctc cttatctctt gcaaaaaggg ctttaaactc ttctaaatag ctgtttaaat
    17101 caagctttga gatcaattct tcttttgtat cattcatcat ttaacctaca atctttaata
    17161 tctatgatta aagaattaaa actttgatta ttatcttttg aaataaaact tcctgtacca
    17221 aattcataat taaaatacgc cttagaaaca ttgatatctt tacataaaat atttttattt
    17281 tgattaaaag ctacgataat atctgttctt aaatgacttt tttgtgtgtt ttcaaattca
    17341 aaaaataccg ctaaaacaat aaaaatcaca agtaaaatac caaaaaaagg tttggttttt
    17401 ttacctaatt tttcacgcaa agcaaaagtg attaaggcta aaattaaaat aattaaaaga
    17461 tataaaaaaa acctactcat ttttttgcct taatttatta ctgatatctc ctgcgccaaa
    17521 acctataata agcccttctt caaaaacctg ccccttagaa gccaccaaaa atttaccctc
    17581 tcttttgata tcttctacaa ataaagcctt aggaaaaacc gcctttaaat caagttctat
    17641 aggctcttct cctgcagcat aaacaggtaa aattataagc tcatcaacac cttcaaaagc
    17701 ctttgcaaat tcctttaaat ttgcagccaa acgcgtgtag cggtggggtt caaagatagc
    17761 tgtgattttt ttatatccgc ctaatcttgc gtattcttgt gctgcactta aagtcgcttt
    17821 tatttcggta ggatgatgac cataatcatc gattaaaacc aaattttcat cagcatgtaa
    17881 aatatcaaaa cgctttttaa taccttgata atttttaagc ctagttctta tcgtttctat
    17941 atctaagaaa tttaaagccg ctaaaatcgc caaagacgca tcaagggcta aatgatatcc
    18001 catgccaaaa actttaaact cacctaaatc tttcaactca aagcttgtaa aaggtttgaa
    18061 attttctata cacatggtgc agtttttgat atctttactt ggataaagct tgattgactc
    18121 atttttataa tttttcaaaa actcatcttc agcattaatc acgcgaattt tagccgtatc
    18181 taaaaactgc gtataagcat aatggagttt tgaaacttca ttaccataat gatctaaatg
    18241 ctctgcttct gcattagtaa ctatagccaa ataaggattt gaatttaaaa aagaactatc
    18301 gctctcatca gcttcaaaaa caaggttttg actttcctta taaatcatat ttgaaccaaa
    18361 ttcttttaaa atcgctccga tgatcacaga agcatcatca agtaaagaag ctaaaatact
    18421 tgaagtcgtg ctttttccat gtgctcctgc aactgcaaaa acacgcttat cttctaaaat
    18481 aagaggtaag gcttccttgc gtgaaagaca cttaatacct aattctttag cgtgtttaaa
    18541 ttcaggattt tcttctttga tagcagcaga ataaataact aaatctttgt ttaaaatatt
    18601 gtctttatga tgagggatac tgaccttaac cccttctttt tctagttcgt tagtgatttt
    18661 actttcttta agatcacttc cgctaatctt aaaacctttt tcttttaaaa atcttgctaa
    18721 agcggaaatt cctataccgc ctatgccgat aaaatggata ttttgcatca tttaaacctt
    18781 tatactttaa aggctaaatt ttagcacttt tttactaaaa agaaaatata aatcctattt
    18841 tgaaatgcct aaacgctcgg ctaattgata taaatttaac tctctataaa atttatcaaa
    18901 gtctttagta taaacatcaa ggttaaaagc tttattcata tcttttaaag tatcattact
    18961 ttcaaaataa taccctttac cgccactata aatacctttt ttatcaatcc atacagcatc
    19021 gttaatccca aattctaatt tctcatcact tggtcttgct aacatatttc ttccgcctac
    19081 gcttaaatac ttaacattat ttaaacttaa agcataaaga gttggaaaaa tatctttatg
    19141 agatcctaca cgatctttat cataataaat atcatcttgt aaatccttag gaatataaag
    19201 ataaaaaggt acactataag caaaagcttt ttgggaattt aaatctatac tcatttcgcg
    19261 tactctatga tctccagttg ctgctataat gacattatct ttaaaagaac tttgttttac
    19321 tttatctaga aattttccaa attcattgtt tgcataagta taagctttga taatgttatc
    19381 ttgtttgtct ttttcataag gaagcatatt aagcaaagtt tgcggaatgt tttgtaattt
    19441 tggcaaatca ttttgtggaa ttttataagg tggatgatta gaaatagtaa gagcaattat
    19501 aagggtgttg tgtggatttt tttgaagtaa gtcataaact tttttatata aaaactcatc
    19561 agctacccca taaccatttt cgctatcttt tgctccatta tactctttca ttaaaatatt
    19621 ttcatctata atctcatcta cccccaaaat actgagataa tttttaatat tttgccaaga
    19681 tccattacct gcacttacaa aaatcacctt atatcctgct ttcttataaa tagcaatagg
    19741 tgttaaatct aaataagttt tctgaaattt acttgtggaa atattagaaa atggacttac
    19801 aaaaaataag tttgcaaaac ttggtatagt tccattacta gaactcaaaa agcgtttgaa
    19861 taaaaaatct tgcttaaaat gtttatctaa cgaacccaaa aaattatgtt ctgtatttgt
    19921 aaaatcagcc aaattaagcc caaaactttc cattaagtta acaaatacac taggatgatt
    19981 cttttcagct tttagattta taggactttg atgcaaataa tcaaaaagtt tttctttaag
    20041 ttcttgtgct tttaaaggtg tgatagcctt caaagctgct tcttctttat attgttttaa
    20101 agcccaagaa aatgccataa ttggatttaa cattgtatca tttacaacac tatattcgct
    20161 aaaagaataa ttttgcacat ttatagccac atgcttaaat ggacccctta aggctataac
    20221 ataaacaata attaatatta aatttaaagc tatcaaggga aataatctta aattaacagg
    20281 ttttagcttt aaatttaata ttttcaaatt taaaaaaaat acaaaaactc caaaaatcaa
    20341 cattaaagct aaaattttta aaattggata atcgtgataa ataatactta aaatagtttt
    20401 tgcgttatca tcttttagag taaacataaa aatatcaaat ttagtcttgt aaatttcgta
    20461 ataatagtat tttgcataag aaaatcctat acaaa
//
LOCUS       DARBAR010000018        19520 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.018, whole genome shotgun sequence.
ACCESSION   DARBAR010000018 DARBAR010000000
VERSION     DARBAR010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19520)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19520)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19520
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.018"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..339
                     /locus_tag="SB815_000474"
     CDS             <1..339
                     /locus_tag="SB815_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlgG"
                     /protein_id="HEG0906242.1"
                     /translation="KKAAENDPVVSSTKEYLGVSSYYSNIDIANTIKQYYNLFSNALG
                     QSFSNDKTSFSEADINSMPSGYGVSGTQWMDFNEPSNRMNITGLKDFSNSLISNVYKT
                     PEQAKEADEI"
     gene            355..699
                     /locus_tag="SB815_000475"
     CDS             355..699
                     /locus_tag="SB815_000475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906243.1"
                     /translation="MIKGLSSETLGLSLEEIKNVSRGEDWQFNPDMSVYPQNEDGSYS
                     KETLFMSFLKAQGGQPVESLKTTLNPKLEAYKRAMAKESFSGPAINIDSIMTGKSDFK
                     SFFRYWAEWHRR"
     gene            707..877
                     /locus_tag="SB815_000476"
     CDS             707..877
                     /locus_tag="SB815_000476"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906244.1"
                     /translation="MYENNISKESAMGNWALDAEIKQALANGWKAKPSTIDSYADSIM
                     DRLNNLLGQTRV"
     gene            972..1742
                     /locus_tag="SB815_000477"
     CDS             972..1742
                     /locus_tag="SB815_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEG0906245.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDKRKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVRKGDEALKDK
                     LDNFIDESRKNGFLDFLGNKYLKDIKEVFKQNNITFFL"
     gene            1835..2062
                     /locus_tag="SB815_000478"
     CDS             1835..2062
                     /locus_tag="SB815_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0906246.1"
                     /translation="MKKVAFFLLFLFLSCTVLNAAREYCKYAYQEDRAIPLILNYGIR
                     LGVVGAGVANAPAPGGSTYNSKIDMMAARCH"
     gene            2088..2312
                     /locus_tag="SB815_000479"
     CDS             2088..2312
                     /locus_tag="SB815_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906247.1"
                     /translation="MLEFIFTLILDFTFYSIKTLEKVFLGRTALVILFVVFIALFCVK
                     GLFLYILLALELFLLLYLFLGILFLRFYKS"
     gene            complement(2309..3043)
                     /gene="fliP"
                     /locus_tag="SB815_000480"
     CDS             complement(2309..3043)
                     /gene="fliP"
                     /locus_tag="SB815_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HEG0906248.1"
                     /translation="MKKILLFLLLSMSLFAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            3186..4475
                     /gene="glmU"
                     /locus_tag="SB815_000481"
     CDS             3186..4475
                     /gene="glmU"
                     /locus_tag="SB815_000481"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEG0906249.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLGNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQKKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSINVEKGALFINRAGHKMIKDYYYKKFQK"
     gene            4472..5626
                     /gene="coaBC"
                     /locus_tag="SB815_000482"
     CDS             4472..5626
                     /gene="coaBC"
                     /locus_tag="SB815_000482"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEG0906250.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFTPASVNSINKLAFGIADNLFI
                     QTLIAANKPLIIAPAANTNMFHHFSTQNSLKILKENKALIIEPICKVLACKDEGVGAL
                     AEVKDIFNITKRELLKEKFWCNKSVVITGGGTRERIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLSHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            5623..6240
                     /locus_tag="SB815_000483"
     CDS             5623..6240
                     /locus_tag="SB815_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906251.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFNFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            6244..6912
                     /gene="uppS"
                     /locus_tag="SB815_000484"
     CDS             6244..6912
                     /gene="uppS"
                     /locus_tag="SB815_000484"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HEG0906252.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            6909..7685
                     /locus_tag="SB815_000485"
     CDS             6909..7685
                     /locus_tag="SB815_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEG0906253.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKLFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLSISLLINEILGAILLILVYSLSQNFYDFLFLSLF
                     LFNLFLLSLIDIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFLLNAFS
                     FGGFVFLLKSLVFFLMNFQKKDEILENLGDADIIIMSCIGGILGFEYGFLVLFIASIL
                     TLPFFIFFRIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
     gene            7685..8710
                     /locus_tag="SB815_000486"
     CDS             7685..8710
                     /locus_tag="SB815_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG0906254.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENLQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            8707..9432
                     /gene="truA"
                     /locus_tag="SB815_000487"
     CDS             8707..9432
                     /gene="truA"
                     /locus_tag="SB815_000487"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEG0906255.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(9429..10640)
                     /locus_tag="SB815_000488"
     CDS             complement(9429..10640)
                     /locus_tag="SB815_000488"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEG0906256.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSTEQKQHGVIAASAGNHAQGVAISAKKFSIKAVIVMPEST
                     PLLKVSATKALGAEVILRGDNFDEAYAFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGISSTAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVAALLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIYVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(10640..11053)
                     /locus_tag="SB815_000489"
     CDS             complement(10640..11053)
                     /locus_tag="SB815_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEG0906257.1"
                     /translation="MNEKETISYIINTSKNIVIFALSPDKTKASYRVAEFLQRKNYKI
                     FPIYPKEEFILNEKVYRNLDQIEEKIDTLILFRKGEVALEILPKLVEKNIKNLWLQLD
                     ISNETAKEECKKLDINFIQNRCIMLEYPHFKTKEK"
     gene            11172..11588
                     /locus_tag="SB815_000490"
     CDS             11172..11588
                     /locus_tag="SB815_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HEG0906258.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGVFIHPFVFVLCIAIVILAKLMNYFFIPC"
     gene            complement(11575..12648)
                     /gene="trmA"
                     /locus_tag="SB815_000491"
     CDS             complement(11575..12648)
                     /gene="trmA"
                     /locus_tag="SB815_000491"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HEG0906259.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKSKKKYIIEYLDFADEKICAFMPRLLEYLRQDNKLKEKL
                     FGVEFLTTKQELSITLLYHKNIEDIKSNLENLSNILHINLIARSKGKKLIFKTENLRQ
                     TLNIQDRKIFYEFNNDCFIQPNTAINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKILATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYGNIIYISCNPITLKENLKELSLTHRVE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(12645..14378)
                     /locus_tag="SB815_000492"
     CDS             complement(12645..14378)
                     /locus_tag="SB815_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HEG0906260.1"
                     /translation="MNKFLVSLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFTGVLSGTFLLSLSTNIFKAQHLTFVNYYNTTVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISNISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLDTTELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASTNPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            complement(14375..15124)
                     /locus_tag="SB815_000493"
     CDS             complement(14375..15124)
                     /locus_tag="SB815_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEG0906261.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQEGYKAIALARRKERLEELKNA
                     YKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAIIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            complement(15121..16359)
                     /locus_tag="SB815_000494"
     CDS             complement(15121..16359)
                     /locus_tag="SB815_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG0906262.1"
                     /translation="MKLLFTSFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVAYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWQEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     DLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALESYENTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANFNAVDDLGFNALDFALSAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            complement(16409..18955)
                     /locus_tag="SB815_000495"
     CDS             complement(16409..18955)
                     /locus_tag="SB815_000495"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HEG0906263.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIIMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYEGKIIKNGSTIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEVGYENK
                     ATLARRAEKMREWLKNPTLLRADKDAKYAYIIDINLNNIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLIN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSNEHKANIYRYLNFNEIENFKLEN"
     gene            19010..19462
                     /locus_tag="SB815_000496"
     CDS             19010..19462
                     /locus_tag="SB815_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEG0906264.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMEIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIASNGIGGYNGGLEIKRFLLENEGVNLK"
BASE COUNT         6492 a         2805 c         3232 g         6991 t
ORIGIN      
        1 aaaaaagctg ccgaaaatga tcctgttgtt tcaagtacaa aagaatactt aggcgtaagc
       61 agttattatt ctaatataga tatagcaaat actataaaac aatattataa tcttttttct
      121 aatgctctag gtcaaagctt ttcaaatgat aaaacaagtt ttagtgaagc agatataaat
      181 tctatgccta gtggttatgg tgtaagtgga acgcaatgga tggactttaa tgagccaagc
      241 aatagaatga atattacagg tttaaaagat ttttcaaatt ctttaatttc aaatgtttat
      301 aaaacccctg aacaagcaaa agaagctgat gaaatttgac ttgattcagg atgtatgatc
      361 aaaggattat catctgagac tttaggttta tccttagaag aaatcaaaaa tgtttctaga
      421 ggtgaagatt ggcaatttaa tcctgatatg tcagtttatc cacaaaatga agatggaagc
      481 tattctaaag aaactttgtt tatgagtttt ttaaaagctc aaggtggaca acctgttgag
      541 agtctaaaaa ccacacttaa tccaaaatta gaagcttaca agagggctat ggctaaagag
      601 agttttagtg gtcctgcaat taacattgat agtattatga caggtaaaag tgactttaaa
      661 agctttttta gatactgggc agagtggcat agaaggtgat ttatatatgt atgaaaataa
      721 catttctaaa gaatctgcta tgggtaattg ggctttagat gctgagatta aacaagctct
      781 tgctaatggt tggaaagcaa aacctagcac tattgattcc tacgctgatt ctataatgga
      841 tagattaaat aatcttttgg gacaaactag ggtttaggaa gtattaattt tttaagtttg
      901 aaataaattg ctaataacaa aataagataa aactagtata atttttttac aaaaaaaatt
      961 gaaaggaaat tatgaaaaaa attattttga tttttatctc tttttttgct ttaaatttga
     1021 gtgcaaaaga tttggttgta ggaatggagc ttggatatcc gccttttgaa atgagcgata
     1081 aaacaggcaa agcaagtgga attagcgtgg attttttaga agcttttgca aagaaaaacg
     1141 gctataaact tgtagtaaaa aatatcgctt gggatggttt aatacctgct ttaaaaacag
     1201 ccaagataga tcttattatg tcctctatga caattaccga taagagaaag aaagtggtgg
     1261 attttagcat tccttatgct aaggcaaatt tggctatttt aactcctttg aactctgata
     1321 ttacaaatat caaagattta gataaaaagg gcaaagtttt ggctttaaag cgtggttcta
     1381 cagggcattt atatgcggtt aaaaatttaa aaaatgcaac tattaattta tttgataaag
     1441 aaaatgctgc tattttggaa gtgattcaag gcaaggctga tggatttttt tatgatcaac
     1501 ttacgattta tcggacttgg caaaagcatc aagatacaac cagagccatt ttagcgcctt
     1561 ttcaagaaaa tcctgagttt tggggtatag ctgtaagaaa aggtgatgaa gctttaaagg
     1621 acaagcttga taatttcatt gatgagagta ggaaaaatgg ctttttagat tttttgggca
     1681 ataagtattt aaaagacatt aaagaagttt ttaagcaaaa taatatcact tttttcttgt
     1741 aggcttttaa taaaatattg ataattaata ttaattttat gaattttgat atacaatatc
     1801 attatctaaa ttttaaataa aaggatttaa gataatgaaa aaagttgcat tttttttgtt
     1861 atttttgttt ttatcttgca ctgtactaaa cgcagctagg gagtattgca aatatgctta
     1921 tcaagaagat agagctatac ctttaatttt aaattatgga ataagattgg gggtagtagg
     1981 tgctggggtt gcgaatgcac ctgcaccggg cggaagtact tacaattcaa aaattgacat
     2041 gatggctgca agatgccact aagcttagtt tttgggtgta ttttacaatg ctagaattta
     2101 tttttactct tattttagat tttacttttt attctatcaa gaccctagaa aaagtctttc
     2161 tagggcgaac agccttagta attctttttg ttgtttttat agctcttttt tgcgttaaag
     2221 gcttgttttt gtatatactt ttagctttag aattattttt gcttttgtat ctttttcttg
     2281 gaattttgtt tttaagattt tataaatctt aggttacaaa gctttccaca agcctttgca
     2341 ctagcaaatt ccatccatcc actaatacaa aaattaagag tttaaaaggt aaagagatca
     2401 tagtaggagg tagcatcatc atacccatag ccattaaaac tgagcttaca accatatcta
     2461 tgactaaaaa gggtaggtag attaaaaacc ctatttcaaa agcggtttta agctctgaaa
     2521 tcataaaagc aggaactaaa accgtaaggg gaacatcatc tatggttttg ggattgggta
     2581 gattgcgtat gcgataaaaa agggctaaat ctttttcgcg agtattttta agcataaaat
     2641 ctttaaaagg ctttgctcct tttataaaag cctcttcata gcctattttt tctgctaaat
     2701 aaggttttat accttcatta taggattttg tagctacagg ttccatgata aaaaaagtta
     2761 aaattaaagc caaggttact aaaatggtat taggtggcat actttgcgtc cccatagctt
     2821 gtcgcaaaaa tgaaaatact acaataagac gcaagaaaga agtcataaca aaaactatac
     2881 ttggagcgag cgcaagtatg gttaaaacaa tcactatatt taaagtagta acaagctgat
     2941 taggtgtatt gggtgcactt aagcttaaat ttactgtagg gatagttgct tcagcagcaa
     3001 ataagctcat gcttaaaagt aaaaataata atattttttt caaaatttaa aaaccttttt
     3061 ttgtttttta ctaaagaaat ttaaatttta tcttttgatg actaaaaact agtttaaggg
     3121 tattaggatt ttaactttaa actgctaaaa tagtctttta gacttcttaa taacaaaggt
     3181 aaaaaatgaa aacttctatt ttgattttag cggcaggatt aggcactaga ataaaatcac
     3241 aaaagccaaa ggttttgcaa gagctttgtc aaaaaagtat gattttacac attttaaaaa
     3301 aggcttttgc tttaagtgat gatgtaagtg tagttttatc gcatcaaaaa gaacgcgttg
     3361 aaaaagaaat tttagaatat tttccaaaaa cacaaatttt agagcaagat ttgcaaaatt
     3421 atccaggaac tgcgggagct ttaagtgggt ttgagcctaa aaatgaaaga gtgttgattc
     3481 tttgtggtga tatgcctttg gttgagcaaa caagtttgga agctttgttg ggtaataatg
     3541 caaaattaaa tctagcagtt tttaaagcaa gagatcctaa aagttatggt agggtggtga
     3601 taaaaaacga tagcgttgaa aaaattgttg aatttaaaga tgcaaatacg caagaaaaag
     3661 agataaatac ttgcaatgct ggggtttatg tgattgactc gaggctttta aaagagcttt
     3721 tacctttgat tgataacaat aatgcggcaa aagagtatta tttaaccgac attgtaaaac
     3781 tagcaaaaga aaaagatgtg atgattaaag cagtttttgt agatgaagat gaatttatgg
     3841 ggattaatga taaatttgaa ctcagtatag ctgaaaattt catgcaaaaa aaaattaaaa
     3901 aatactggat gcaacagggt gtgatttttc atttaccgca aagcactttt ataggtgcag
     3961 atgttgaatt tgtaggtgaa tgtgaagtat atgaaaatgt aaggatagag ggcaaaagta
     4021 agattataaa ctctatcatt aaaagttcaa gcgtgataga aaattccatc gtagaaaata
     4081 gcgatgtagg gcctttggca catttgcgtc caaattgtga gttaaaaaac actcatatag
     4141 gaaattttgt agaatgcaaa aatgcaaagt taaataccgt aaaagcaggg catttgagct
     4201 atttaggaga ttgtgagata gatagtggaa ccaatatagg ctgtgggact atcacttgta
     4261 attatgatgg ggtaaaaaag cataaaacca tcataggaaa aaatgttttt gtaggttctg
     4321 atacgcaatt tatcgcacct gtaaaaatcg aagatgaagt aatcatagca gcaggaagca
     4381 cagtaagtat caatgtagaa aagggtgctt tgtttatcaa tagagcaggg cataaaatga
     4441 taaaagatta ttattataag aaatttcaaa aatgaaaacc atacttttag ccattagcgg
     4501 tagtatagct ttttataaat cttatgagct tatttctttg tttaaaaaag aaggctttag
     4561 ggtaaaagtt ttgctttcta atggtttgtt aaaatttgct agcaaaatga gttttgaagc
     4621 cttggttgat gaagttttat gtgaggaaaa tgaaagttgg caaaattcaa acaatcacat
     4681 agcttttagc aaggatgtag accttgtttt gtttacccct gcaagtgtta attctatcaa
     4741 taaacttgct tttggtatag cggataatct ttttatccaa actttaattg cagcaaataa
     4801 acctcttatc atagctcctg cggcaaatac aaatatgttt catcatttta gcacgcaaaa
     4861 ttctttaaag atacttaaag aaaataaagc tttgattata gagcctattt gtaaagtttt
     4921 agcttgtaaa gatgaaggcg taggagcctt agctgaagtt aaggatattt ttaatatcac
     4981 caaaagagag cttttaaaag aaaagttttg gtgcaataaa agcgtagtta tcacaggtgg
     5041 cggcacaagg gaaagaatcg atgatgtgcg ttgtgtgagt aatttttcaa gtggaaaaat
     5101 ggcaaaagcc atagctgatg ctttttattt tttaggagct agggtaaaac ttttaagctc
     5161 tgtggaattt gatacgcctt atgagctttg caaatttgaa agttctaagg atctaaagga
     5221 gcttttggat aaaaatttaa gtcatgactt tttgattatg acggctgcag tgagtgattt
     5281 tatccctcaa agtgtaaaag ggaaaattaa aaaaaatgag catttacagg gtttaaattt
     5341 gcatctatct ttaaatgaag atttgcttaa aacttgcaaa tttcaaggca aaaagatagg
     5401 ttttaagatg gaatttgatt ctcaaaatgc cttagaaaat gcgaaaaaat ctctaaaaga
     5461 taaacaactt gatatggttt gccttaatat cattgatcaa aaaaattatt ttggaagtga
     5521 tcaaaatgaa ctttatttta tcactttaaa caatgaaaat aaaagcactt tgcaaagcaa
     5581 agaaaaattg gcatttgaat tagtaaaatg gtgtgaaaaa ttatgagtat gattaattct
     5641 actttaccta tacaaatgaa agttttagct aaatcaggtt atggacatta tacgctttta
     5701 ttaaatcaca aaaagattca aaccaaaagc atgatagagc ttgaaattgg tgctgaatat
     5761 ttagctgaac tttatatgca aaatggtgga gttatacaat ttaaacatct ttcaaagcgt
     5821 cctaatttca aaccttttga agagggattg gctttgataa tcgctatttt agaggataaa
     5881 atttcttata aaaaattcat tatacaaaat cttttagatt gtaaagatat agagcgttat
     5941 cagatattaa aagaaatgct ttttgcaagt tttgaaaata tttatcatat tccttttaac
     6001 tttgaaaata aatcttgctt gtttcaaatg cgtaaaagag caaaatattt agaaatttac
     6061 ttatatttta gcgtttttgg agctttaaaa attttaatag actcgcaagg cattagtgtt
     6121 tttacacctt ttgccaaggt gcaaaaattt ttaaacgaac atttagattt taatgtatct
     6181 caagaaaaca agattgaacc tttgtttgtt ttcaaaaggc tttttgattt taaaggatga
     6241 aaaatgaatg aattaaaaca ccttgctgtt gttatggatg gcaataggcg gtgggctaga
     6301 gctaagggtt ttttggcaaa gcttggatat tcccaaggag tcaaaactat gcaaaaattg
     6361 atggaagttt gcatggaaga aaatatttca aatttaagcc tttttgcttt tagtacggaa
     6421 aattggaagc gtcctaaaga tgaaattgat tttatctttg aacttttaga tcgttgttta
     6481 gatgaagctt tagaaaaatt tgaaaaaaat aatgtgcgtt taagagctat aggtgattta
     6541 tcgcgcttgg aagataaagt aagagaaaaa attaccttag ttgaagaaaa aacaaagcat
     6601 tgtgacgcac tttgtgttaa tttggctata agttatggtg caagagatga gattataaga
     6661 gctgctaagc gtgtgattga aaaaaaactt gagctaaatg aagaaaattt aacgcaaaat
     6721 ttagatttac ctttagatgt ggatttgatg cttcgcgttg gaaacgctaa aagactttca
     6781 aatttcttac tttggcagtg ttcatatgct gaaatttatt ttagtgaaac tttatttcca
     6841 tctcttacca agagagaatt taaaaggatt attaaagaat ttagaaatag agaaagaact
     6901 tttggaaaat gatatttttc ataataattc taggggcttg tttgggttct ttttgcacaa
     6961 gtttggcaag taggataatt gaaaaaaaac tcttttttat ctcgcgctct ttttgttttt
     7021 cttgtgatac aaaattaaaa tactatgaaa ttattcctat tttttcttat atttttttaa
     7081 aggcaaaatg tcaaacttgt aaatgtcatt tgtctatttc tttgttaatc aatgaaattt
     7141 taggcgcaat tttgcttatt ttggtttatt ctttaagtca aaatttttat gattttttat
     7201 ttttatctct atttttattt aatcttttct tactttcttt gattgatatt aaactcaaag
     7261 ccgtaccaca aattttactt tggagtgctt ttttatttgc ttttttttac gcctttaggg
     7321 aaagtgaaat tttacatttt ttgattttta aagagtttag tggaggtttt ttactaaatg
     7381 cttttagttt tggaggattt gtttttttat taaaaagttt ggtttttttt ctaatgaatt
     7441 tccaaaaaaa agatgaaatt ttagaaaatt tgggtgatgc tgatattatt attatgtctt
     7501 gtataggtgg aattttaggt tttgagtatg gatttttagt attatttata gcttctattt
     7561 tgactttgcc tttttttatt ttttttagaa ttaaagcaat aaaagagcaa gaacttgcta
     7621 tgataccctt tttaaatatc gcttttgtgg cagttttatt ttataaaaac ttaggattat
     7681 tctaatgaag cttagtttaa gatatgtttt aaatcaattt ttaagtacga atttgtctat
     7741 atttttcgta ctttttgcta ttgtatctat ggtgtttttt attcaacttg caaaacttac
     7801 ttcaagtata gagattagtt ttttggatct tttaaagctt tatgggttta tgttgcctag
     7861 aattttaatt tttaccttgc ctatatcttt ttttatttct ttaactttgg ctttgtttag
     7921 gctttctaag gaaaatgaaa gcatagtgct ttttactttg ggattttcac caatgatttt
     7981 ggcaaaattt ttccttaaaa ttgcaagctt gattagtgct tttatgcttg ttgtagcttt
     8041 ggtaatgata cctatagtat ttgaacttca ggataacttt gtaaactata aaagcactca
     8101 agtgaaattt aactacaaaa caggagaatt tggacaaaaa tttttagact ggatgatttt
     8161 tatagaaaaa caagatagtg ataagtatga aaacataatt atgtatcgcc ctaaacataa
     8221 agcagatgat aaagaacaac ttatcatagc caaagaagcg catgtgcaaa gaaaagatga
     8281 tagctttgct tttagcttaa atcaaggcaa aatgtataat tttgagcaag gtcaaagtat
     8341 ttttagtgga gaatttgaca ctttagtagt aaatactcag tttaatacag acaatcttca
     8401 aacaaagaaa ttttatgaat actggaatga tttaaacgaa aatctacaaa gagcaagaga
     8461 atttgtgatt tatacaacta tagccttgtt tccacttgct agtacgcttt ttgcgctttg
     8521 ttttggtttg gttacttatc gttatgaaaa aggctatgtg tatttaggta tgtttggagt
     8581 gattgctata tattttggac ttttaagttc tttttctcaa cctccaattt tggcttgtct
     8641 tggaattttt tctttaagtt tatttgtttc ggcttattgt tttaagaaaa tgattttgag
     8701 tcgatattga tgaaaataaa aattatattt tcttatgatg gctctgcttt tttaggttct
     8761 gctactcagc ctcataaaaa aggtgttcaa gatgctttaa gtggggcctt atcgcatttg
     8821 ggtatttttt cacctctttt gatggcttct cgtacagata aaggagtaca tgcaagctat
     8881 gctgtagcta gtgtggagtg tggagattat tttacaaatt tagaatatct tcaaaaacaa
     8941 cttaataaat tttcccatcc ttttatccat atcaaaaaaa ttgaaaaagt aaaagatgat
     9001 tttgaagtaa gatttgatgt aaaaagtaga gaataccgct atatattttc tcacgcttct
     9061 tatagtcctt ttatggcttc ttatgtacat ttttatccta aatttgacct aggtaaagct
     9121 aatgaacttt tgggtttttt tgtaggaaaa aaggatttaa agtttttttg caaaagtgga
     9181 ggggataata aaacgacttt aagagaaatt tttattgcta gagcttatgc ttataaagat
     9241 tttagcattt ttcattttaa agctaatggt tttttaagag ggcaaattag attaagcgta
     9301 gcaagcgttt taaaagtttt agaaggaaaa atgagtgaaa aagaactcaa agaacagatt
     9361 gaggctaaaa agcaatacaa tcacttttta gcaccgccaa atgggcttta tttaagccgt
     9421 atatgttatt aaaaactttc atagaaatta aaagcctttt gggttaaaat ttttcttatt
     9481 tcttcttgat gttctttacc tttggtttct agagtaattg aaatcatcgc atcgccataa
     9541 tcaagcttgg tagaaaatct atcatagtcg atttttacta tatttgcatt ggctattttt
     9601 aagctgtctg taaggtgtaa taatgcccca ggtttatcta ctaaagtaac ataaatttgc
     9661 atttttctgt aagatttaaa taaacctttt tctatgatga tatttagcat ttgtgcatcg
     9721 atattgcctc cgcttaaaac tacgccaatt tttttatgat tttgtgtatt tattttttga
     9781 tgaagcaggg cggctacact cgcagctccc gcaccttcga ctatgatttt atgtttttcg
     9841 agtaaaaaca ataccgcatt agctatttct tcatcatcaa cttggataaa atcatctaca
     9901 cattctaaga taatgttaaa atttatagga tttgcatcac gcacagcaat accatcggct
     9961 atagtgcgta cgcttttcgc atttttgatt tttttagcat gaaaactttc atacattgca
    10021 ggagctcctt tggctccaac tccgatgatt ttaatgttag gattgatttg tttagctgta
    10081 cttgagatac cgcttataag tcctccgcct ccaacaggtg caataatcat atcaagatcg
    10141 cttatttcat caagcatttc aagcattaaa gttccttgtc ctgccattac aaattcatct
    10201 tcaaaaggat ggataaagct aagattattt tctttagcat aagaggttgc aaaagcatag
    10261 gcttcatcaa aattatctcc tctgagtatc acctctgctc ctaaggcttt tgtagcagaa
    10321 acttttaaga gtggagtgga ttctggcatt acgataactg ctttaatgct aaattttttt
    10381 gcactaatgg ccacgccttg agcatggttt cccgcacttg ctgcaatgac tccatgttgt
    10441 ttttgttcag tgctaagatt ggctatttta ttgtaagctc cacgaatttt ataagcacct
    10501 gtaatttgta aattttcatt tttaagataa atctcacttt gacaaatatc acttaaaaaa
    10561 gaagagtata tgaaaggagt tttgtttaca aatcctgaaa tttgttgttt tgctttgtaa
    10621 attttattaa gctctaacac tatttttcct ttgttttaaa atgcggatat tctagcataa
    10681 tgcaacgatt ttgtataaaa tttatatcta attttttaca ttcttctttg gctgtttcat
    10741 tactaatatc aagttgaagc cataggtttt taatattttt ttcaacaagc ttaggaagaa
    10801 tttctagcgc cacttcacct tttctaaaaa gtataagtgt atcgattttt tcttctattt
    10861 gatctaaatt tctataaact ttttcattta aaataaactc ttctttagga taaataggaa
    10921 aaattttata attttttctt tgtaaaaatt ctgctaccct ataagaagct tttgtcttat
    10981 ctggacttaa agcaaatatg acaatatttt tacttgtatt tataatataa gagatagttt
    11041 ctttttcgtt cattgttaac ctttgttttg gtattttatc ttaaatgatt aaaaaattaa
    11101 ctaaagtgaa ttcaaaaaat gaaaaaagtg ttataatata gcaaattccg aagtttaata
    11161 aggagggaaa aatggaagaa ttttatccat atactttaac aatccatctt ctttgtgcta
    11221 ttttgtttat aggttatttg tttgttgatg tatttgtttt gggtgtagtt aaaaagaaaa
    11281 atcctaattt tgacaaaagt ctttttagtg ctactggagt taaaataatg ccttttgttg
    11341 ttcttttgct ttttttaagt ggaggtgctt tggcaggttt tcattttaaa cctttaaatt
    11401 tactttttgc tgtaaaaatt attttggctt ttggaatttt atctttagtt gttttttctt
    11461 tattttgtca ttttatatta aagaagaaaa atccactcgg tgtttttatc cacccttttg
    11521 tatttgtgct ttgtatcgcg atagtaatac tggctaaatt aatgaattat ttttttatac
    11581 cttgctaaga aatactccac attcaagatg tggagtattg acaaattgat caaacagagc
    11641 aaactcttcc actctatgtg ttaggcttaa ttcttttaaa ttttctttta aagtgatagg
    11701 attgcaagaa atataaataa tatttccata tttttttatt aagtcaatta cgcttttatc
    11761 aagtcctgca cggggtggat caactaaaac atgagagaaa ttaaaatcat ctaatcgaat
    11821 atcttttaaa cgaaaaaatt ctctttcttt tttgatagca agacttaatt cttcgcttga
    11881 aagtcttgca aagtggatat ttgttgtatt gttaagctcg caatttttta aagcaaaatt
    11941 aatattgctt tttgaaattt cagtggctaa aattttaaaa aagaatggcg ctaaagctaa
    12001 agtaaaattt ccatatccac agtaaagctc aagcaaatcc attctttttt gagtgtttaa
    12061 aatttcacac acccaagtaa tcattttttc atttatagca gtattaggct gaataaaaca
    12121 atcgttgtta aattcataaa atatttttct atcttgaata tttaaagttt gtcttagatt
    12181 ttctgtttta aaaataagtt ttttgccttt acttcttgct atgaggttga tatgaagaat
    12241 attgcttaaa ttttctaaat ttgactttat atcttctata tttttatgat agagtaaggt
    12301 tatgctaagt tcttgctttg tggttaaaaa ttctacacca aaaagttttt cttttaattt
    12361 attatcttga cgcaagtatt ctagaagtct tggcataaaa gcacaaattt tttcatcagc
    12421 aaaatctaaa tattctataa tgtacttttt tttgcttttt ggatcaaaca ttgcataaaa
    12481 aagcgtatca ttttcatgat aaaatgaaag ttcagctctt gtacgataat gtttatcttt
    12541 tgaagcaaaa agtttaaaat cctttgtata aaattcttta aaatattttt ttatgaaaga
    12601 atgtttttca tctaaagtga gaaaatttcc aaaattttca agactcatgg aactttcttt
    12661 ccgatgagtc ttagtaaaag tgcaataagt atgaaattta aaggcaagac aaaccaaacg
    12721 ctaagtccta aagatacagg aatatatcca gcgattaaag aaatgccaca gataaataaa
    12781 gcataaggaa tttgtgttct tacatgctcc atatgatcgc attttgcact catagatgaa
    12841 aggattacat tatctgaaat tggtgagcaa tggtttccaa aaatcgcacc tgttaaaacg
    12901 cagcttatat taataaccat ataatgatgc atagcgtttg catccatacc attgattttg
    12961 gcgatttcat gagctaaagg cacagctaaa ggcattaaaa tccccatagt tccatagctt
    13021 gttcctatgg caaaagaaat ggctgaagca aaagcaaaaa tagtagcagg caaaataaac
    13081 tcaggcaatt tgtctgcaag caaactagtg ataaataaag aagttcctag atcttttact
    13141 atgcttgaaa gtgaccaagc aaataaaagc aatactatgg taaaaatcat ggttttccag
    13201 ccatatatcc aagtttctac cgcttcttta agattgaaaa ttttacgacg caccccgata
    13261 aaaatcgcta caatagcagc aaacaaagca gcttggaata acaccacaga agaatcagca
    13321 tttccaaaag cagctctaaa agtttcaaaa gacaaaggat tggtacttgc ttttgcaagt
    13381 tcttcgcctt ctaaagtgct aagtccatta aaataaaatc ctaatatagc taaaatgatt
    13441 aaagtaaaaa taggaacaat agcatcaaaa gcacgaattt taataccttc ttttggtgct
    13501 aaaaactgat cttctaattc agtagtatct agtgtgcctg atttaggtag aggagcaatt
    13561 tgtcctgtgg ttcttgcacg cacttcagcc ttgtacatag aaccaaactc acgccccatg
    13621 attgcagtca tgactacaaa aaaaagcatg aagatattat aaaaacgata aggtatggtt
    13681 tcaacaaaaa ttccaaaagc actaatattg ctaatgccta tgtgttcata agcggtttta
    13741 attaaagaaa cttctaagcc tatccaagta gaaattacag ctattcctgc cacaggagct
    13801 gcggtagagt cgataataaa ggcaaatttt tcacgagaaa ttttaaattt atctgccaaa
    13861 ggacgcataa ttggacctac gattagtaaa ttagcatagt catcaaaaaa tattaaaagc
    13921 cctaaaaacc aagtgttaac ttgagctgat acagctgatt tggctctttt ggcaaatttt
    13981 aatgctacag cttttgcacc tcccattttt gtgataagtg ccacaagacc acctatacaa
    14041 agaatttgta aaatgattcc tgcatttact ggatctgaag ttgaacctaa gatataggaa
    14101 ataatttttg aaaaagattc tactgtagta ttgtaataat ttacaaaagt taaatgttgt
    14161 gctttaaaaa tatttgtaga aaggctaagt agaaaagttc cacttaaaac tccagtaaag
    14221 agcgataaaa taacatcttt tgtgataaag gctaaagcaa tagcaactaa aggtggtata
    14281 agcgtaaaag ctccaaataa attagcattt gcagctgctt ctgaggagtt tgcaaatgca
    14341 actaaaggta aaaacaatga aactaaaaat ttattcattc atctctttct atataaaatc
    14401 cattccaagt ttgtgttacc ggcataagct cgatttcatt aacattaata tggcttggta
    14461 ggttaatgat agacattacc actttggcaa tatcattagc actgataaat tgcgtatttt
    14521 catacactgc atcagctttt tggatatctc ctttaaaacg cacttcacta aattcagttt
    14581 tgcaaagtcc tggagcaatg tttgttactt tgatattgct tcctctaaga tcatttctta
    14641 aggccaatga aaattgtcct acaaaggctt tggttccaca atacacattg cctccaaaat
    14701 aaggattgcg tcccgcaacc gaacctaagt taaaaatata agcatttttt tgtttgcgaa
    14761 gtataggaat aatagctttt gcaacatata aaaatccttt gatgtttgta tctaccatag
    14821 tgttaatatc ttcaaggttt aatttatcaa attcatctac ccctaaagct aaacctgcat
    14881 tattaaaaag cacatcaatt tcttgaaatt ctttgggtaa attttcaata gcctcaaaga
    14941 tttctttttg atttcttaca tctatgcaaa gcgtgtaaat cttatctttg taagcatttt
    15001 ttaactcttc tagacgctct ttgcgtctag caagggcgat tgctttgtag ccttcttgta
    15061 taaaagcttc aacgcaagct ctaccaaaac ctgaactagc tcctgtaata aatgcggttt
    15121 tcattctaaa ctacctccgt aaaatagatt ttcgtttgct tttaaaccca agctttttag
    15181 ataatcagca ttttcttttt tacctgctga tagcgcaaag tcgagtgcat taaaaccaag
    15241 atcatcaaca gcattaaaat ttgctccttt tgaaataaga agttttaaaa tttcaacatt
    15301 tccataggct gcagcatgca ttaaaacatt ttttgaagtg tgctctagag cacaaaatgt
    15361 aataaaataa ggcgtatttg aacctatgtt cgcgcttaat gctaattttt cattgttatt
    15421 aatatatttt tgattaacat ttgctccatt atcaagaagt agttttatga tatcaagacg
    15481 attaaactct atggcataaa aaagtggggt tttaccaaag gcattggctt gattaacatt
    15541 tgctccattt tggattaaaa agtttgtatt ttcataactt tccaatgcat aaaaaatagc
    15601 actttcataa ccttcgtcaa tcctagcgcc aaaacgaatc aaaagttcta aaatttcttt
    15661 ttctctttga tttagaagcg ctgcttgcaa ggctatagta aggtcatctt ggcttggatt
    15721 atttgaaaaa ataaaatctt gtatataaga tactgaataa tttttatttg acatgatttt
    15781 tgctaaagga ctaatgtctt tgtaaatttt tgtttcacca acagcccaat ttaaaaattc
    15841 gtttaaggca ttgctagtat agtaaatatt actgcctttg tcaaaattaa aattactttc
    15901 aaaatacttt tctaaaggtt ctatagcatt attgtattct tgccaaaaag ctttgtaaag
    15961 tctaaaattt cctatgcttt gatatgccca atatctaaaa taagatttta aaatatcata
    16021 ttttttttct aaattttcgg gtgtatctaa agttttttga taagcgatgg gatcgatagc
    16081 tatttttaat aataaaaaat caaattgttg taattttggc aaataagcca caccattaca
    16141 agagctattg cttccgcgaa tttcattgga aattgcatag agtttttttg taaaatcttg
    16201 attttttaaa gattctttac agcttgaagc tatatttaaa taatctaaat ttgaactttc
    16261 atttagcaat gttttattat ttttaatgtt gtcgcagtta atggcatcgc tagccattaa
    16321 acttgcaaaa caacaaaagg aagtgaataa taacttcaat atttttcctt tgaaaatttt
    16381 aattttgtta tttagtatta aatttgaatt aattttcaag tttgaaattt tcaatctcat
    16441 taaaatttaa atatctatag atatttgcct tatgctcatt acttagtttt tcgctgacaa
    16501 tttgtaagta ttcttccttg cttggaattt tacccaaaat cgcacaaact gctgcaagtt
    16561 cagcacttcc tagatatact ttagcaccca tacccatacg attgtcaaag tttcttgtag
    16621 aggttgagaa gacaacagca ccatcattta ctcttgcttg atttcccata cacaaagaac
    16681 aaccaggaac ttctattcta gcacctgctg cgccaaagat gctgtaataa ccttcattga
    16741 taagttgtgc tttatccatt tttgttggag gcactaccca aagtctggtt ttaagtatgc
    16801 ctttatcttt taaaatttct cccaaagctc tataatgtcc tatgtttgtc atacaagaac
    16861 ctacaaaaac ttcatctata ttttttggac gcttgtcatc ggctaaaatt tcgcttaagg
    16921 ttgccacatc atcagggtca tttggacaag ctagaattgg ctccttgata ttgttaagat
    16981 taatatcgat aatgtacgca tattttgcat ctttgtctgc tcttaaaaga gtagggtttt
    17041 taagccattc tctcattttt tcagcccttc tggcaagggt agctttattc tcatatccta
    17101 cttctatcat agcttcaatt aaagagatat tggatttgat atattcgctt acactttcta
    17161 tgcttaaatc cacactgcaa gcagctgcag atctttcagc gcttgcatca ctaagttcaa
    17221 aagcttgttc gacttttaag tttggcaagc cttctatttc taaaattttt cctgcaaaaa
    17281 tatttttctt atttttcttt tcaacggtaa gttgtccttg tttgattgca taataaggta
    17341 tagcattaac caaatctctt aaggtaactc cggcttgcaa ttctccacta aaacgcacta
    17401 aaacactttc aggtacattt aaaggcatag aaccagtaac cgcagcaaaa gctacaagtc
    17461 cacttcctgc agggaaagaa attcctatag gaaagcgtgt gtgagaatcc ccgcccgttc
    17521 ctacggtatc tggcaataca aaacgattaa gccaagagtg gataactcca tcacctggtt
    17581 ttaaacttac cccaccacga cttgtcatga aattgggcaa ggttttatgt aaatttgaat
    17641 cgcttacttt tggatacgca gctgtatggc aaaagctttg cataacaaag tctgcattaa
    17701 aacctaggct tgcaagttct ttaatttcat ctctagtcat aggacctgtg gtatcttgag
    17761 agcctacagt taaagttata ggttctatat acatacctgg acgcacacct tcaactccac
    17821 aggcacgacc tagcattttt tgagccaagg tataaccacc gcttgaagat ttaggttgtt
    17881 caggtttggt aaagatattt tcactttcca ttcctaaaaa ttctctagcc ttagtacaaa
    17941 gcccgcgacc tatgataagt gggattcttc ctcctgctct aacttcatct aagagagtgt
    18001 ttggactgag tgtaaattct gcgattgtag agccattttt tatgattttt ccctcataag
    18061 gatgaatttc aaactcatcg cccatttcta agtttgttac atcacagatg ataggtaaag
    18121 ccccgctatc ttgagcagtg ttaaagaaaa tcggtgctat agttgaaccc attattatac
    18181 caccgctgtg cttgtttggc acaccttcta tttcttttcc taagtgccat tgtatggaat
    18241 ttattgccga ttttctactt gaacctgttc ctacaacatc acctacataa accacttcgc
    18301 gaccgctttt tttaagctct ttgatttttt ctaaggatcc tgtttgtctt acctttagca
    18361 tggcatttgc atgtaaagga atatcgcttc ttgtaaaagc atctcctgca gggcttagat
    18421 catcggtatt tgtttcccct gctactttaa aaactataca tttaatcact tgtggtagtt
    18481 tttctttttt attaaaccag tccgcatttg cccagctttg taaaacttcc ttagcgtgtg
    18541 gattgttttt gctaagttca gctatggtat ggaaattatc atgtacaaaa ataatatttt
    18601 tcaacacttc tgcagcatct ttggctatgt tttcatcttt taaggcatcg attaaaactt
    18661 taacattata tccgcctagc atagttccaa gcattcttaa ggctcttttt ttgtctatat
    18721 ttggagcact gattttgcct ttaagtatgg aatctaaaaa ttcacatttt actaaagctg
    18781 catcatcaac accaggattt actctatttt ctaaaagatt tgcaagctct tcattatttt
    18841 cattttcaag taatttacaa agttctctag tttgatttgc atttaaagga aggggtggta
    18901 tacccaaagc ggctctttct tcaacaagtt tattgtattc ttgcataaaa gacattttct
    18961 actccttaaa tattttttat tataattgta gctctttgaa ggataaaaaa tgtttaaagt
    19021 ttattataaa atgcctttat gttacctatc tttacatagt gatggaaaat ttttaactag
    19081 agtcgatttt tgtgataata aaagatcaga aaaaaattgt agtttgcttg acttagcaaa
    19141 atatgaactt gatttatatt ttactcataa gcttagaaaa tttagcattc ctgttttgat
    19201 acaaggtacg gattttgaat caaaggttta caaggcttta atggaaattc cttatggcaa
    19261 aatagctact tataaagata tagcagaaaa aattaatcat ccaaaagctt ttagagctgt
    19321 tggaaatgca aattctaaaa atcaaattcc tatttttata ccttgtcata gagttattgc
    19381 aagcaatggc ataggaggat ataatggagg gcttgaaata aaaagatttt tgcttgaaaa
    19441 tgaaggagtg aatttaaaat aagcttgggg tttgattttc tttgttttca aattcttgct
    19501 caaaaatatc ataattttca
//
LOCUS       DARBAR010000019        19412 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.019, whole genome shotgun sequence.
ACCESSION   DARBAR010000019 DARBAR010000000
VERSION     DARBAR010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19412)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19412)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19412
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.019"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..555
                     /locus_tag="SB815_000497"
     CDS             <1..555
                     /locus_tag="SB815_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P27 family phage terminase small subunit"
                     /protein_id="HEG0906265.1"
                     /translation="KKNGIKVLKGKTKPYPKDEILRLAKKRQDENHYNSKQNEVILYI
                     DENSIKEKPKANKTEQIQTQDDFKPLNLETIEQELTQKTIKDLENLGIYNPLENDIIK
                     TYVKNLIFLECTSKEMEKKGFTTSTDKGTPIVTPELIAFNSLTKNIIGLAKVLGIGSP
                     NRARLNLKDKKEKSAFDVLLEDES"
     gene            559..2184
                     /locus_tag="SB815_000498"
     CDS             559..2184
                     /locus_tag="SB815_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HEG0906266.1"
                     /translation="MDKLRAREDILNYALAYIKQKNKEFENSPFYIDEKIAKKAVLFI
                     SLLKHTDGELAGKPFQLLNFQIEFIIDIIATYSKEKNARRYSYALLFIPRKNGKTELI
                     GAILLYFLFIDKEKGKKIYCAANETEQAKLVFNAASSMVSQEEELNKMCYQYKTYREI
                     RKKNAKFEDFIKVLTATSETKDGLRPYVFIYDELHAAKNGDLYKVLEEGTASRVNSLC
                     IVISTAGYNHFGEMKKQYDYCKQVKNGIINDPSTYAKIYEPDADDDWNDEKTWIKVNP
                     ALGYGVKLEKLREYYQKALANANDEVSFKTKHLNIWTSNATSFIKDDDFLKCSFKDLD
                     LKGDVYVGLDLSATTDLTALALICEVDKILHVDFKFYAPELSARERSKRDKVPYLEWA
                     KLGFLTLTPGNSVDYDYLINDILALNKKLNIKMIGYDPWNSLEVAKKLSDENIECVQI
                     RQGFASISEPLKEYQIRVLKQTLNHNNNPIFRWCNSNLVIDQDARENIKPDKKKSSER
                     IDAISALVTAIATKNSIEKPKINVYEKRGIRFL"
     gene            2239..2673
                     /locus_tag="SB815_000499"
     CDS             2239..2673
                     /locus_tag="SB815_000499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HEG0906267.1"
                     /translation="MINCNDKFDKWNNEKKKLQIKENKIISIGKIYWVSIGQNIGSEV
                     YGKHNDFKRPVLVLNKIYIEDYVNLFVGVPLTSKIENKTGFLYHHFTDSKNRKQVALL
                     SQVRTFDTKRIISYYNGKIKKEDLETIREKITKKIISPHRAG"
     gene            2833..4005
                     /locus_tag="SB815_000500"
     CDS             2833..4005
                     /locus_tag="SB815_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEG0906268.1"
                     /translation="MFNKIRSLFTKKARNNEFVNSLEILLEDKIKAEELSAVIAAISN
                     ISETIASLPLNLYQRTTDGSKLASNHPLYELIKIAPNETMTPFTLFEAFMVQMLIYGN
                     GFLYPVKKRNGVINSIELIENKDINIFKMNGKYFYQAYSKNGSIVLNYDEVLNVPYHT
                     KDGVKGIAPLRKSKNTTELATAIEQHGLSFFKNGSFTSGVISVPNELSEEAYSRLKQS
                     FKENYSQKKAYNISILEGGASYAQTTSANKNSQFLESKQFQVIEIARLFNIPPHKLGD
                     LSRATFSNIEQQETNYMVQTITPLTTKIEQALNRFLLNQNERKEFYFKFNINAILRAD
                     SSSRWESYVKALSNGVMSINEVRALEEMNPIDNGNDHLIPLNLAKIDEKDTQKGNQ"
     gene            4002..4544
                     /locus_tag="SB815_000501"
     CDS             4002..4544
                     /locus_tag="SB815_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 gp10 family phage protein"
                     /protein_id="HEG0906269.1"
                     /translation="MIEVKGLNELMKDLQSISKKALPNAAKKGALEVAKEITNDYKKN
                     IPKQSGLLKQSVKAVSSYTLEKGVYRAASVVFRMKKVGIKRFEKLKNAKKWTQAKKNE
                     RKQRMDYFASAYYAHFIEYGFFHKGGVKKSAKGKPNISGKNTFVKGTYTMQKAKEKID
                     PKIQSLVTTKLNTELDKLGF"
     gene            4545..4895
                     /locus_tag="SB815_000502"
     CDS             4545..4895
                     /locus_tag="SB815_000502"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906270.1"
                     /translation="MKEFLSDFLMGLSKELNIEIYPLSRQKTKLEKAFLIYEITSEEL
                     NLSIDDKILSKELEINLSLYTPKYKDLRELKSKIESFILKFYKKPIEILIHGEDKDEE
                     SGFFTSEIFITYRL"
     gene            5067..6047
                     /locus_tag="SB815_000503"
     CDS             5067..6047
                     /locus_tag="SB815_000503"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906271.1"
                     /translation="MSKDKIITDAPDVQGLRVLVLSRAMESLGKEAIQAGFLTSISGL
                     KGGTRESQKLSPINDRDYEEINAVGKKTSATVNMNLLYKFVKDGNLESYEGVNYLEKA
                     FEENEEVFIIVEINDERKTTLKIKMKLTGFELQSEANNKFSANITAEKIGEAKDITPF
                     RFEESQNIEHTTKALNVGDVMSDKKGKIIYFYPKESTLEKPELNDERMVYVFDEVRGV
                     IPNPSTQTFNENNEFITTKEADKVWEKENDENIIHESKTEPEQGQTYEELKGKTLYFY
                     PNALTLLYPANEDIRKKYTIDQSSGIASEATMQTFLNGKFSDALRKGGKK"
     gene            6044..6400
                     /locus_tag="SB815_000504"
     CDS             6044..6400
                     /locus_tag="SB815_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein"
                     /protein_id="HEG0906272.1"
                     /translation="MKFNDFLKQHSLREKEILIEGIDEKFTIRQLSMLEQLEIMEKNG
                     IEIQENKDDKISIDFIKKNSNFRKEIILKCLVAPKIDEKTFDNLNQEGLNIIAKVADE
                     ILKFTNEVPKQESKGD"
     gene            6481..6696
                     /locus_tag="SB815_000505"
     CDS             6481..6696
                     /locus_tag="SB815_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906273.1"
                     /translation="MYFLSTEPLASDRNEMQMSILLNMLASFMGVKSTNEDFLLCSHL
                     KHTKQNTNENQKIDIKKLQDDFLSLLG"
     gene            complement(6688..7026)
                     /locus_tag="SB815_000506"
     CDS             complement(6688..7026)
                     /locus_tag="SB815_000506"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906274.1"
                     /translation="MFFPYIELNFFAFVFICFVFFLMWSKSQKIFKNEKFLNDYKSCE
                     KELIAFKEAHENFIKTKQGKSVLMSAFALEFAIKNNAFGDDYTKEFKQILQNYPNEKE
                     FNIEINHHLS"
     gene            7086..12811
                     /locus_tag="SB815_000507"
                     /pseudo
     CDS             7086..12811
                     /locus_tag="SB815_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869968.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            12824..13693
                     /locus_tag="SB815_000508"
     CDS             12824..13693
                     /locus_tag="SB815_000508"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906275.1"
                     /translation="MTIIKPLEFEVLQNLAKKDETPLWDKEVSYKNNEKVQFKGFVWV
                     SASDEDTHEEPDVYFDKWVKFAPINENAFFDDELNTQTKCDKAWSVKLKVDGVFDTLA
                     FLNLDVSKIKIETLDGKIIYEKSMYYKKSRTWWEYFFSKFKVNKEDFVFLPYPINSEI
                     LISFEPAKIGCNVGHILIGKKEFAGVTIYPANSTYINYSKTSTNEWGVTNVVTGKKAK
                     YLEFIVAVEKKDFDYYDDLIAGLYNTKALFIGDESELGFKKLTTFGILKDYSAPLEDQ
                     DYMQYKLNIQGLI"
     gene            13779..14336
                     /locus_tag="SB815_000509"
     CDS             13779..14336
                     /locus_tag="SB815_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HK97 family phage prohead protease"
                     /protein_id="HEG0906276.1"
                     /translation="MSFKNIRADTARLRSVSEENMSLSFVMVSNSNACLRFDWELGDY
                     IEELDVKGARFENLKTLFKDHKPSVDNAIARIENIRIENNELVCDCIFAKDEKSLDIF
                     KKYQDGILSDVSIGYRVLKQVVDKKSSPKRVLVTEFEIFELSAVWKGADKNAKKRFEE
                     DEEKKKIKALSEARERELKLLEISI"
     gene            14353..15519
                     /locus_tag="SB815_000510"
     CDS             14353..15519
                     /locus_tag="SB815_000510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HEG0906277.1"
                     /translation="MQKLRQEIGNLHEQMVALSNKAKNEQRSFSAEENTKYEALMQDF
                     ESKRKELSRAEAELEREKYLNEVVSPVLGQNPKGEDEDLNEENHMRSFVNYLRNGSID
                     NILKRNVLNESTAEQGGILVPTTLQSKIREKLNDLSVIRKIATVQKSSSNQIIPVFDE
                     MGEFSWLGEQESFTEVSAKFSSLSIGAHKLGGIIKISEELLSDNIANLESFIVRKAAE
                     KISKTEELSFINGDGNKKPTGLKNAKKAFTLASNQGITSNDVIDAFFSLDSAYRKNAT
                     WLVGDEFMKAIYKLTDNDNRPLWLPALSANGYDTILGKKVVYCSGVDGFGASKVPAFF
                     GDFSFYEIWDRSSMSFTRLNELYSQNDLIGIKVRLRLDAKLMDNSAVCKIVCPA"
     gene            15530..15781
                     /locus_tag="SB815_000511"
     CDS             15530..15781
                     /locus_tag="SB815_000511"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906278.1"
                     /translation="MKKVVFKCCLSGNIFYKKGDEVLLEDSEALRLLEKGIVEIVEQE
                     EQKQNTDEKSNTDKKPQEDQEMQEKPQKQNEKEDKKGKK"
     gene            15778..16215
                     /locus_tag="SB815_000512"
     CDS             15778..16215
                     /locus_tag="SB815_000512"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phage gp6-like head-tail connector protein"
                     /protein_id="HEG0906279.1"
                     /translation="MRLKALKDSKKELIDIQELRDFLRIDSDVFDANLKQFLKAGMNE
                     FETRTNRILALNDYEVEFFNERVILAPFNALKNANFKAEFKTNGGVLYAIGCGNMIVN
                     LGFEELPQDIKLWLKNYVLMAFDGVSMPKISSALITRYKIAYF"
     gene            16228..16545
                     /locus_tag="SB815_000513"
     CDS             16228..16545
                     /locus_tag="SB815_000513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="head-tail adaptor protein"
                     /protein_id="HEG0906280.1"
                     /translation="MKANGFKHRVKIYKKEQSKNEFLESDFTQDLLFKEVYASCKNLS
                     ADVKELNSGLSLVATHEFELRFLELDFSYFLVFRDEKYEIVSLEDESQNKKFLKIKAR
                     KFQ"
     gene            16542..17174
                     /locus_tag="SB815_000514"
     CDS             16542..17174
                     /locus_tag="SB815_000514"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906281.1"
                     /translation="MNKISFINTLPKAPDMANPVDFDKDANNFVNALVPFSKEINDFI
                     KDINILSASLIELNSNMISYTNLALEQIDSKTNINILKIENFCKDFQNVLEQKAKERL
                     KEFTDECLTIVENKGYEMIERLNDNGVGADYIAISQSLTHSLSLERFIMERGFIKLRK
                     EEALNLDDVNLSLEEQRRDINLAQKALENITNILSSQNEINLTLKGENNA"
     gene            17167..18732
                     /locus_tag="SB815_000515"
     CDS             17167..18732
                     /locus_tag="SB815_000515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906282.1"
                     /translation="MLDNSKIRSTELYATLSQATKDVTAIREWLYASKDRIDEHILEN
                     LNAFDEKVKEALQNYENLSDEKLNMLKELYKKVVYPFDYVSDEEPTMANVNETWFKTD
                     EAKIFKFIKNPQITFLQKERPKERKINDIWFKPMDDVNLQVGEFYLCEKVLKNEAWIN
                     PSLPENLEPAFNQEEAPQNATLGDIWKKGDEYFVYIKTTSGNSWTSPENPSEYTPTYE
                     SEEEPSEAKLGEIWKKGNEYLIYARVTNDTAWILKSDLGLDAFIWFNEEKENINFILS
                     LIGDLKKEDEKEETSKNEIKDLEQNLSNKQEELENIKKQIEEALAKDPPQNVDNLNEK
                     KTQLEQEITKMQEDLNHKQNELEQIQKDKSLVSQKMLSDALKEKVGLKGDETLNGNKT
                     LNGDNIFNGTNTFNQALTSRADPTNDNHLTRKWYVDYGGGIKNLGTTGSINLDLRQAQ
                     HFILTANAGTSIGIANFGGVGKSGTITINNCQNVVAFNAPFKFRIAQSGFSGTETFAY
                     FCIASNNVRLVRT"
     gene            18734..19183
                     /locus_tag="SB815_000516"
     CDS             18734..19183
                     /locus_tag="SB815_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906283.1"
                     /translation="MNCLLLSNNGIALNLPPSLGGSVANYNYMLKLDMIYKQAVVLPS
                     NINNKEVVMLGEVWTTGNMSNKTSANTLHITWNNFNSSVELHALSKYYTANAKIKVEK
                     KFNFGNIDNLQIMLSSWQSGSANASAGWNLNDGDRLNPRANLTLYWN"
     gene            19196..>19412
                     /locus_tag="SB815_000517"
     CDS             19196..>19412
                     /locus_tag="SB815_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906284.1"
                     /translation="MFYDLKNKSLKYDDIFLKDVKIQNEEGEIDAQDTYFLSACDDKL
                     LKELGFAKVKEEEIPSFNEKIEELRQIQ"
BASE COUNT         7965 a         2412 c         3381 g         5654 t
ORIGIN      
        1 aagaaaaatg gcataaaagt attaaaagga aaaactaaac cctatccaaa agatgaaatt
       61 ttaagacttg ctaaaaaaag acaagatgaa aatcattaca attctaaaca aaacgaagtt
      121 attttgtata ttgatgaaaa ttcgataaaa gaaaagccaa aggcaaataa aacagaacaa
      181 atacaaacgc aagatgattt taagccttta aatttagaaa ccatagagca agaactcaca
      241 caaaaaacta tcaaagattt agaaaattta ggcatttata atcctttaga aaatgatatt
      301 attaaaactt atgttaaaaa tctcattttt ttagaatgca caagcaagga aatggagaaa
      361 aaaggtttta caacaagcac agataaagga acgcctattg taacgcctga acttatagct
      421 tttaattctt tgactaaaaa tattataggc ttagcaaaag ttttaggcat aggctctcca
      481 aatcgtgcaa ggctaaattt aaaagataaa aaagaaaaat cagcttttga tgtgctttta
      541 gaagatgaaa gttaaattat ggataaatta agagcaagag aagatatatt aaattacgct
      601 ttagcttata ttaaacaaaa aaacaaagaa tttgaaaact cgccctttta tattgatgag
      661 aaaatagcta aaaaagcggt tttgtttatc tctcttttaa agcacaccga tggcgaatta
      721 gccggtaagc cctttcagct tttaaatttt caaatcgagt ttatcatcga tatcatcgcc
      781 acttattcta aggaaaaaaa cgccagaaga tactcttacg ctttgctttt tatcccaaga
      841 aaaaatggta aaaccgagtt aatcggagct attttgcttt attttttatt tattgataaa
      901 gaaaagggta aaaaaatata ttgtgccgca aatgaaaccg aacaagcaaa attagttttt
      961 aatgctgctt catctatggt aagccaagaa gaagaattaa ataaaatgtg ctatcaatat
     1021 aaaacctata gagaaatacg caaaaaaaac gctaaatttg aagattttat caaggtttta
     1081 acggctacaa gcgagacaaa agacggctta agaccttatg tttttattta cgatgagctt
     1141 cacgctgcta aaaatgggga tttatataag gttttagaag aaggaacggc aagtcgtgta
     1201 aattctttat gtatagtcat ttcaacagca ggatataatc attttggaga gatgaaaaag
     1261 caatatgatt attgcaaaca agttaaaaat ggcattataa acgacccatc aacttatgca
     1321 aagatttatg agcctgatgc tgatgatgat tggaacgatg aaaaaacttg gatcaaagtt
     1381 aatcctgctt tgggttatgg cgtaaagctt gaaaaattaa gagaatatta tcaaaaagct
     1441 ttagcaaacg caaatgatga ggtgagtttt aaaacaaaac atttaaatat atggacttca
     1501 aatgctactt cttttataaa agatgatgat tttttaaaat gcagttttaa agatcttgat
     1561 ttaaaaggcg atgtttatgt tggacttgat ctatctgcta ctactgattt aactgcttta
     1621 gctttaattt gcgaagtgga taaaatctta catgtggatt ttaaatttta tgcaccagaa
     1681 cttagtgcaa gagagagaag taaaagagat aaagtgcctt atttagaatg ggcaaaactt
     1741 ggctttttaa ctctaacgcc aggtaatagt gttgattatg actatttaat taacgatatc
     1801 ttagctctaa ataaaaaatt aaatatcaaa atgataggtt atgatccatg gaatagttta
     1861 gaagtagcca aaaagttaag cgatgaaaat atagagtgcg ttcagattag acaaggtttt
     1921 gcaagtatta gcgaaccttt aaaagaatac caaatcagag ttttaaaaca aactttaaat
     1981 cacaataaca atcctatttt tagatggtgt aattcaaatt tagttattga tcaagatgca
     2041 agagaaaaca taaagcctga taagaaaaaa tcaagtgaaa ggatagatgc aatttcggct
     2101 ttagtcactg caatcgccac taaaaacagc atagaaaaac caaaaatcaa tgtttatgaa
     2161 aaaagaggta taaggttttt atagcttaat aaatttagaa gtaaaaatga gtaaaattat
     2221 atttttcaag gagttttttt gataaattgt aatgataaat ttgataaatg gaataatgaa
     2281 aagaaaaaac tacaaataaa agaaaataaa ataataagca taggtaagat ttattgggtt
     2341 agcataggac aaaatatagg cagtgaagtt tatggaaaac ataatgactt caaaagaccg
     2401 gttttagttt taaacaaaat atacattgag gattatgtta atctttttgt tggcgttcca
     2461 ttaacaagca aaatagaaaa taaaacaggt tttctttatc atcacttcac agatagtaaa
     2521 aacagaaagc aagtagctct attatcacaa gtaagaacct ttgatactaa aagaataata
     2581 agttattata atggaaaaat caaaaaagaa gatttagaaa caattagaga aaaaataaca
     2641 aagaaaataa tatccccgca cagggcgggg taactcgtaa atgagccaac tctccttatc
     2701 agaagaagtc taaaacctac ttttaaagtt ttacaattct tatgatcact gagaaattat
     2761 atcatttttt ttataaaacg cactttaacg cctcaaactt tttttaaaat aagtaaaaaa
     2821 taaaggtttt gcatgttcaa taaaataaga tcattattta caaaaaaagc acgaaataat
     2881 gaatttgtta atagcttaga aattttatta gaagataaaa taaaagctga ggagctttca
     2941 gcagtaattg ccgcaatctc aaatattagc gagaccatag catctttgcc attaaattta
     3001 tatcaaagaa caactgatgg atcaaaacta gcctctaatc accccttata tgaactcatc
     3061 aaaatcgcac caaatgaaac aatgacacct tttacactct ttgaggcttt tatggtacaa
     3121 atgctaattt atggcaatgg ttttttatat cctgttaaaa aaagaaacgg ggtgattaat
     3181 tctatagaac tcatagaaaa taaagacatt aatatcttta aaatgaatgg aaagtatttt
     3241 tatcaagctt actcaaaaaa tggcagtatt gttttaaatt atgatgaggt tttaaatgtg
     3301 ccttatcata ctaaagatgg agtaaaaggt atcgcaccgc ttagaaaaag caaaaatacc
     3361 acagaacttg caacagctat agaacagcac ggacttagct tttttaaaaa tggaagtttt
     3421 acaagtggcg ttatatctgt accaaatgaa ttaagcgaag aggcatattc gagattaaaa
     3481 caatccttta aagaaaatta tagccaaaaa aaagcttata atatttctat tttagagggt
     3541 ggagcaagtt atgcacaaac tacaagtgcg aataaaaata gccagttttt agaaagcaaa
     3601 caatttcaag tgatagaaat cgcaagactt tttaatatcc caccgcacaa acttggagat
     3661 ttaagtcgtg cgactttttc aaatatcgaa caacaagaga caaattatat ggtgcaaacc
     3721 ataacacctc taacaactaa aatcgaacaa gccctaaatc gctttttatt aaaccaaaat
     3781 gaaagaaaag aattttattt taaattcaat atcaacgcta ttttaagagc tgatagttct
     3841 tcaaggtggg aaagctatgt aaaagcttta agtaatggcg tgatgagtat aaacgaagta
     3901 agagccttgg aagaaatgaa cccaattgat aatggaaacg atcatttaat accgcttaat
     3961 cttgccaaaa tagatgaaaa agacacacaa aaaggcaatc aatgatagaa gtaaaaggct
     4021 tgaacgaatt aatgaaagat ttgcaaagca taagtaaaaa agctttgcca aatgcggcta
     4081 aaaaaggagc tttagaagta gcaaaagaaa tcacaaatga ttataaaaag aatattccta
     4141 aacaaagcgg acttttaaag caaagtgtta aggcagtttc tagttatact ttagaaaaag
     4201 gtgtttatcg tgctgcttcg gttgttttta gaatgaaaaa agtaggtata aaaagatttg
     4261 aaaaattaaa aaatgctaaa aaatggacac aagcaaagaa aaatgagaga aaacaaagaa
     4321 tggattattt tgcgagtgcg tattatgctc attttataga gtatggattt tttcataaag
     4381 gcggagtgaa aaaaagtgca aaaggaaaac caaatataag cggaaaaaac acttttgtaa
     4441 aaggcactta taccatgcaa aaagcaaaag agaaaataga cccaaaaata caaagcttgg
     4501 ttacaacaaa actaaatact gagttagaca aattaggatt ttaaatgaag gaatttttaa
     4561 gcgatttttt aatgggacta agcaaggaat taaatataga aatttaccca ctttcaaggc
     4621 aaaaaacaaa gctagaaaaa gcatttttaa tttatgaaat cacaagcgaa gaattaaatt
     4681 taagtataga tgataaaatc ttaagcaaag aattagaaat taatttgagc ctttatactc
     4741 caaaatacaa agatttaaga gagttaaaaa gcaaaattga aagttttatt ttaaaatttt
     4801 ataaaaaacc tattgaaatt ttaatacatg gagaagataa agatgaagag agtggatttt
     4861 ttacgagtga gatttttatc acttatcgtt tataaatttc ttttctatgt cctacttcaa
     4921 gacaaagaat agttaatttt tcatcaacaa aaaattagaa aataaaatac aaaaatatag
     4981 ttttatgaaa aatatctctt aatacgcatt ttaacgcctt aaacttttta taaaatctcc
     5041 ttacattact tatataagga gaaaagatgt caaaagacaa aataattaca gatgcccctg
     5101 atgtgcaagg gcttagagtt ttagttttat ctcgtgctat ggaaagttta ggaaaagaag
     5161 ctattcaagc aggattttta acaagtattt caggtcttaa aggtggaact agagaaagtc
     5221 aaaaactaag cccaatcaac gatagagatt atgaagaaat caacgcagta ggcaaaaaaa
     5281 cttcagctac tgtaaatatg aatttacttt ataaatttgt taaagatggt aatttagaaa
     5341 gttatgaagg tgtaaattat ctagaaaaag cttttgaaga aaatgaagaa gtttttatca
     5401 tcgtagagat taatgatgag agaaaaacca cgcttaaaat caaaatgaaa ttaacaggct
     5461 ttgaacttca aagcgaagca aataataaat tcagtgcaaa tatcacagca gaaaaaatcg
     5521 gcgaagctaa agacatcaca ccttttagat ttgaagaaag tcaaaatata gaacacacta
     5581 caaaagcttt aaatgtgggc gatgtgatga gtgataaaaa aggtaaaatt atttattttt
     5641 acccaaaaga aagcacactt gaaaaaccag aattaaacga tgaaagaatg gtttatgttt
     5701 ttgatgaggt gcgaggtgtt ataccaaatc ctagcacaca aacttttaat gaaaacaatg
     5761 aatttataac cacaaaagaa gctgataaag tttgggaaaa agaaaatgat gaaaatatta
     5821 tccatgaaag caaaaccgaa ccagaacaag ggcagactta tgaggaatta aaaggaaaaa
     5881 cattatattt ttatccaaac gccttaacac ttctttatcc tgcaaatgaa gatattcgca
     5941 aaaaatacac catagatcaa agctcaggca tagcgagtga agccacaatg caaacttttt
     6001 taaatggaaa atttagtgat gctttaagaa aaggaggtaa aaaatgaaat tcaatgactt
     6061 tttaaaacaa cattctttaa gagaaaaaga aattttaatc gaaggtattg atgaaaaatt
     6121 cacaattcgc caactttcta tgctcgaaca attagagatt atggaaaaaa atggcataga
     6181 aatacaagaa aataaagatg ataaaatcag catcgatttt atcaagaaga attcaaattt
     6241 tagaaaagaa atcatcttaa agtgtttagt agctccaaaa atcgatgaaa aaacctttga
     6301 taatctcaat caagagggtt taaacattat cgcaaaagtc gcagacgaaa ttttaaaatt
     6361 cacaaatgaa gtcccaaagc aagagagcaa gggcgattaa tttatcgcct tgcccttgca
     6421 ttaggaaaaa ccataggcga gttagaacaa agtataacac aaagtgagtt taacgagtgg
     6481 atgtatttct taagcaccga gcctttagca agtgatagaa acgaaatgca aatgagtatt
     6541 ttacttaata tgttagcttc ttttatgggt gtaaaatcga ctaatgaaga ctttttatta
     6601 tgctctcatt taaaacatac taagcaaaat actaacgaaa atcaaaaaat cgatattaaa
     6661 aaattacaag atgacttttt aagtctttta ggatagatga tgatttattt ctatattgaa
     6721 ttctttttcg tttggataat tttgcaaaat ttgcttaaat tcttttgtat aatcatcgcc
     6781 aaaagcatta tttttgatag caaattccaa agcaaaagca ctcataagca cacttttacc
     6841 ttgctttgtt tttatgaaat tttcatgagc ttctttaaag gcgataagct ctttttcgca
     6901 acttttataa tcattaagaa atttttcatt tttaaatatt ttttggcttt tgctccacat
     6961 cagaaaaaag acaaaacaaa taaaaacaaa agcaaaaaaa ttaagctcta tatatggaaa
     7021 aaacataatt taaaaactcc attttttatc ttaaattcta ctcaaaaaaa ctaaaaggaa
     7081 cataaatggc taaaaatgtt aaaatcggcg ttagcgtaga tacaaatagc ggtgtggcga
     7141 gtattggagg tttaaataaa agttttaatc aattaggaaa tgttacacaa gcgacaaata
     7201 aatacataaa agatatagaa aagagctttt taggactttc aaaaagcgta attgacatga
     7261 acgcccattt aacacaagct tatcagggtt ataaaacttt agcacttgat ataaaaaatt
     7321 ttggtagctc ttttatagaa gcaagtaaaa gttttgagac tgcaaaaact caacttgctt
     7381 ttataacagc caccacgcat tcaaatattg ataccacagg aaaagcgata tcacaacttg
     7441 aaaaatggaa agccgctaca aaaagcagtg aaaaaacgtt taaagatttt aatgatttgc
     7501 atactaaaac aggctattct ttgcaggatt tatcaagtat gtttcaatct tttgcctcca
     7561 cagctttaaa taatatgagc tttgatgaag ctaaaaaagc ttttgaaagt attatgatag
     7621 caacctcaaa tacttccatg agtgctaatc aactttcaat tactatggat agtttaggag
     7681 ctggggcatt tagcgcaagt ggagatttaa gaagatttgc tgaaagttta ggtattacaa
     7741 atgatgctat gagcgaagca aagaaaaatg gtaagctttt tgatttattt atagaaaaaa
     7801 ccaaagagtt aacaaaatat acagactaca caacgcaaac ctatgaaaag caaatgcaaa
     7861 aatttgaagc taatatgcaa atgttacaag ctgaaatttc aaaacctatt tttgatactc
     7921 ttaaaagctc ccttatagat ataaacactt atattaaaga taatgaaaaa gaaattaaag
     7981 cgggcattaa agctattacc gaatttgcta cttcttttaa agatttggct attggtgcag
     8041 gacttgctta tgtagctttt aaaagtttta attcttttaa gaattcatct ttttttacaa
     8101 gttttagtaa tggtattaag aatgttaaaa aagattatga tgatttagta gaaaagcaaa
     8161 aaacaagcct tgaacttata aagaaaaatg agaatttaaa aattcaactt caaggtctta
     8221 aagaagctaa aaacgactta gaaaagctta aagccttaat gccagattta gctaattatg
     8281 caaaatacaa taataaaata gacttaggat cgataaataa agatggaact aaaaatttaa
     8341 gcggtgtaat gataggaagg gaagctttgc taatcgaaca aggtgcaaga agtgaaataa
     8401 aaagattgca aaaagaaatt atagacaatg aagcacttat taatcaaaat ataataaaaa
     8461 gaaatccctt gttaagcacc ataaaaggca ctatgagtaa tttagcaaat tctgctttaa
     8521 attttacaaa ggctttagct ccaactgctg ggcttatagc tttgatgact tttatagaaa
     8581 agctttatac gaattgggat aattttgaca aagctttaga aaaaacatca aaaagaaagc
     8641 tagaaaacaa aagttcaaaa gaattagatg agtatgttaa aaatcttaaa agtcaaatgg
     8701 atgccttaga agcaaatgga agtgttttgg gagctcaaat cacatcaaaa ttagattttt
     8761 ggcatataaa agaaggtgta gaaagtgttt taaaaggcac tgattatatg tttgaaagtg
     8821 ttaccggaaa acagctaaaa atgaataaag aagctagaaa agcttacgaa caaatacagg
     8881 caaatttaaa actagccgaa gaagccacca aaaaagcaaa ggagcaagaa tttaaactag
     8941 aagctattga taatctccct gctagtgtta gcaaagccat ggaaagtttg aaagctttaa
     9001 ggataccgca aagcacagaa gaacaagccg aaaatttaag aaaacaatat gagcttatca
     9061 gcgaaaccat acaacaaatc acgaataatg caaattggaa taaagactta gcaaaattag
     9121 agcaatataa cgctttagta gctcaaagaa cgcattatga agaatatata aataaacaag
     9181 aagagcaaag attaaaaaaa gaaaaagaaa tcgccaatca aaaactggca gaacgcatca
     9241 aagaacaaaa tgaagcctta aaagaaattt cacaaatagg catgagtgaa tacgataaaa
     9301 aattaagcca aattaatgaa aaattaaaag tatggaaaaa gttaggcatt gataaaaaca
     9361 aattaaaaca agcagaagaa agccttaaaa ttaatcttga tctagaaagt gcaaataaga
     9421 ctttgaagat actaaaaatt taatgattga attttatgaa agtatagaaa ataagcagga
     9481 agcttgggca ttaaaagaaa ttgagctaag agacaaatac agcaaattat taagtgaaaa
     9541 tctcatcaaa gaagaagatt ttaaaaagat gataaaagcc aataaagacg cttattttca
     9601 aatgggcaaa gacagtaaaa aagccatgag cgaagtagaa aaaaactata atcaaatgat
     9661 agcaaatatg caaaaaacga tagaaagtag cttttttgat gttataaatg ggaaaataaa
     9721 aaccttaaaa gatttgttta aagatttagg aaaaaccatt ttacaagatt ttttaagtcc
     9781 ttatatttca tcacttagtg gctttttatc taaggcagga gctggagtat tgagcggttt
     9841 aatgcttaat tttgcttttg gtaatgtgaa ttcacactcg caaacaaatg cttttagctc
     9901 agttgttgaa tttgctaaaa atcaaggttt aaatttaaat agtgatggca aatatcaagg
     9961 tgtggttaat ggtgttgagg tagtcatgga taaaacaggc accatagaaa aaggaaataa
    10021 tgcttttaat aatgtgagta atattataga gggtgcaagt aaattagatg gcattatgag
    10081 tggcgaatgg atagataaag cgggcgccac ttatgataaa gttatgaatt ggtttggcag
    10141 tagtcaaaat gcaggaagtg aaataagttt tagtgatgct ttaaatgcgg atggttttag
    10201 tgatttttta agttcaagtt ctgatattag cactactatt gaaaattcaa gcacaaatat
    10261 tatagatagt ataggcaatg gctttaattc tttatttgat aatttacaag gttatatcaa
    10321 ttcaataggc acttttggca gtaatctttt agctaatggt tcagcttatt tggcaaattt
    10381 tttaggactt ggtgcaagct ttacaaacgg tgcttctttg gcgggtatgg gattaagtgg
    10441 tgcaagtaat gctttatctc ttggttttgg tgagggcttg ggctatatag gtggcacttt
    10501 agctaatgca gcaatgggcg gacttctagg ttatggcata ggaagcttag gagattggct
    10561 ttttaaggct gatactcacg caggaacagg tggtgcgata ggtggtgcat taggtagtat
    10621 tataatgcct ggcattggaa ctatagtagg tgggctttta ggatcagtca ttggtggtat
    10681 ttttggaaaa accaaagtaa caggaagtgg cttacaactt tgggaaaata taaattttag
    10741 tgattttttt acaaattcta atttgcaagg ttatgtagac tatcaaaaga aaggatggtt
    10801 tagtaaaaaa agctggacag aatataataa tttaagtgat aaaaaaatca aagaaatcaa
    10861 tcgtgtttta gaaaaccaat acgcaacact tgtaaaatta aatgccaatt tagataagtt
    10921 tgaattagta gctggaaaat acgctaataa ttctttattt gatacggctt tgcctactgc
    10981 acttttaaaa agctttttaa atatcgatga taaaagcgaa atcgatgcac aaattgtagc
    11041 aatacaagaa aaggcaaaag caaataatat aagctatgcc cagcaacttt ctaatcaatt
    11101 tggtactttt atgcaaatgc aaactagcat tttaaatcaa atttataaaa atgatccaac
    11161 aaaacaagca aaactagctt atgatgatac catgtatgct ttaaaaactg cgatgagaaa
    11221 tgccacaggt ggatttagtc tttttggatt aagtgaagaa agctttaaag atttaggaca
    11281 acttagtgcc gaagcactta ataaagcttt caatgagagc ttaaggcaag attttagccc
    11341 tgagaattta gaaatttggc aacaattaac acaagcttat acgcaagcac aagaacaagt
    11401 taaaaatctt ttaaattcta tcatacaaaa aacacaagaa cttatgcaaa tcaatcaaag
    11461 ctttttaagt gctaatggta tttcaagtag tatttttgaa gttaatcatc taatgaattc
    11521 ttacgcaacc ttaatgagcg gtttaaaaga tgatttaaat gatagcgaaa aagaaatgtt
    11581 aaaggatatt tttagtgcta atgataagct tttaagttta ggttatgagg gtttaaatga
    11641 atttttaagc acgggtaata ctgaacttag aaaacagctt gtagatatca ttacacaatt
    11701 taaacaaata agcgacaaac aaggcggttt aatcttttca agcgaacatt taaacaaact
    11761 cgctgaggta gaaaagctta ttaatgcgta tgagaacaaa gatgaaagca aagaagcaga
    11821 tcaagtaagg ttaaatgaaa ataataaact tttaagtaaa ttaaatagcg aacttggtat
    11881 tttaagttct ttgggttctt ttagcactaa tttaatcaat caaagcatag ctacaagcga
    11941 gagcgtggcg ttaaactacg ataaaatttt aaaacaagct aaaaatgatt ttaaaaatgg
    12001 caatcttaca agttcaagct ttagtgcctt gcaaaacgct gcaacgcaaa aagcaaacga
    12061 gatcaaaaat caagcttcaa gctttgcaga gtatcaatta caaatgctta aaatggcaaa
    12121 tgaaatgaaa gatttaggtg gtgaggcaga tttaaattca atacaagata aaatagaagc
    12181 cattacagaa gaaaataaaa aattacaaga aaagttagat caaactttaa aagacacttc
    12241 taatatgact ttagaagagt taaaagagta taaaaaaact ctcattgcgc aaagtgaagc
    12301 agaaattgca aaaatgatcg agtatttagg cgaagaaagc cctatggcta aatatttaca
    12361 agaaacgatt aaatctataa aagatggcgc ctctcttaca gaaacaacgc ttaaaaattt
    12421 agaatatgca cttttgcaat atcaaaataa tcaggcaaat atagataaag atttaaataa
    12481 tgagattaaa aatccttaca aaaaaatgaa agcttttgca gatggcggga tagttacacg
    12541 ccctacaaat gctttaattg gagagaatgg ttatcctgag gctgtaattc ctttaaaaaa
    12601 tggcaaaggt ttaaaaatcg atgcaagtgg agtttttgaa aaaataggca tcgcttttga
    12661 aaaagctatt aataaaggtt ttaattcttt tgaagaaaaa ctagacttaa tcgcttcaaa
    12721 aattgacaat gtagataaaa gtgtaaaaag agcaaatatg gatttaagta ttttaactaa
    12781 acaaactaga gaaattgcag aaaatattta ataaggaaag aagatgacta taattaaacc
    12841 tttagaattt gaagttttac aaaatttagc taaaaaagat gaaacgcctt tatgggataa
    12901 ggaagtaagt tataaaaata atgaaaaagt gcaatttaaa ggttttgttt gggtaagcgc
    12961 aagtgatgaa gatacgcatg aagaacctga tgtgtatttt gataaatggg ttaaatttgc
    13021 acccatcaat gaaaatgctt tttttgatga tgaattaaat actcaaacaa aatgtgataa
    13081 agcttggagt gtaaaattga aagtagatgg ggtatttgat actttagcat ttttaaattt
    13141 agatgtttca aaaataaaga tagaaacatt agatggcaaa atcatttatg aaaaatcaat
    13201 gtattataaa aaatctcgca cttggtggga atattttttt agcaaattta aagtcaataa
    13261 agaagatttt gtgtttttac cttatcctat taactcagaa attttaataa gttttgagcc
    13321 tgctaaaata gggtgtaatg taggacatat tttaatagga aaaaaagaat ttgcaggtgt
    13381 tacaatctat cctgcaaata gcacttatat aaattactca aaaacttcaa caaatgaatg
    13441 gggagtaaca aatgtagtaa ctggtaagaa agcaaaatac ttagaattta tagttgctgt
    13501 agaaaaaaaa gactttgatt attatgatga tttaatagca ggactttata atactaaagc
    13561 cttatttata ggagatgaaa gcgaattggg ctttaaaaaa ttaactactt ttggaatttt
    13621 aaaagattat tctgcacctt tagaggatca agattatatg caatataaac taaatattca
    13681 aggtttgatt taaaaaataa aaaatatctt ctaacacgca ctttaacgcc ttaaaaattt
    13741 tctaaaatcc ttataaaact tcaaaaaagg attttaaaat gagttttaaa aacataagag
    13801 cagataccgc aagacttaga agcgttagcg aagaaaatat gtctttaagc tttgtcatgg
    13861 tttcaaattc taatgcttgt ttgcgttttg attgggagct tggggactat atagaagagc
    13921 ttgatgtaaa aggtgcgaga tttgaaaatc ttaaaactct ttttaaagat cataaaccaa
    13981 gcgtagataa tgctattgca agaattgaaa atataagaat tgaaaataat gagttagttt
    14041 gtgattgtat ctttgccaaa gacgaaaaaa gcttagatat ctttaaaaaa tatcaagatg
    14101 gaattttaag cgatgtgtca attggttata gagttttaaa gcaagttgta gataaaaaaa
    14161 gttcgcctaa aagggttcta gttacagagt ttgaaatttt tgaactcagc gctgtttgga
    14221 aaggtgcgga taaaaacgct aaaaaacgct ttgaagaaga tgaagaaaaa aagaaaatca
    14281 aagccttaag tgaagctaga gagcgagaac ttaaactttt agaaatatca atttaaacaa
    14341 ggagaaaaaa caatgcaaaa attaagacaa gaaataggaa atttacacga acaaatggtg
    14401 gctttatcaa ataaggctaa aaacgagcaa agaagcttta gtgctgaaga aaacacaaaa
    14461 tacgaagctt taatgcaaga ttttgaaagt aaaagaaaag aactctcaag agctgaagca
    14521 gagctagaaa gagaaaaata tttaaatgag gttgtaagcc ctgttttagg acaaaatcct
    14581 aaaggagagg atgaagattt aaatgaagaa aatcatatgc gttcttttgt gaattattta
    14641 agaaatggaa gtattgacaa tattttaaaa agaaatgttt taaatgaaag cacagcagag
    14701 caaggtggga ttttagtccc tacaactttg caaagtaaaa taagagaaaa attaaatgat
    14761 cttagtgtta ttagaaagat tgctacagtg caaaaaagct ctagcaatca aattatacct
    14821 gtttttgatg agatggggga attttcttgg cttggcgaac aggaaagctt tactgaagtt
    14881 agtgctaaat ttagttcttt aagtataggt gcacataagc ttggcggtat tattaaaatc
    14941 agcgaagaac tcttgagtga caacattgca aatcttgaaa gttttatagt gcgaaaagcc
    15001 gctgaaaaga tttcaaaaac agaagaatta agttttatta atggagatgg aaataaaaaa
    15061 ccaacaggac ttaaaaatgc taaaaaagcg tttacacttg cttcaaatca aggtattaca
    15121 agcaatgatg tcatagatgc ttttttcagt ttagacagtg cttatcgtaa aaatgccact
    15181 tggcttgtag gagatgagtt tatgaaagct atttataaac ttacagataa tgataatcgc
    15241 ccattgtggc tacctgcttt aagtgctaat ggctatgaca caattttagg taaaaaggta
    15301 gtttattgtt ctggtgttga tggttttggt gcaagcaaag tccctgcatt ttttggagat
    15361 tttagttttt atgaaatttg ggatagatca agtatgagtt ttacaagact taatgagctt
    15421 tactctcaaa atgatttaat aggtattaaa gtgcgtttaa gacttgatgc aaagcttatg
    15481 gataattcgg cagtttgtaa aattgtatgc cctgcttaaa ggatggaaga tgaaaaaagt
    15541 agttttcaag tgttgtttaa gcggtaatat tttttataaa aaaggtgatg aggttttact
    15601 tgaagatagt gaagccttaa ggctcttaga aaaaggcatt gtggaaatcg tggaacaaga
    15661 agaacaaaaa caaaatactg atgaaaaatc aaatacagat aaaaagccac aagaagatca
    15721 agaaatgcaa gaaaagccac aaaaacaaaa cgaaaaagaa gataaaaaag gtaaaaaatg
    15781 agattaaagg cattaaaaga tagcaaaaaa gaactcatag acattcaaga attaagagac
    15841 tttttaagaa ttgatagcga tgtttttgat gcaaatttaa aacaattttt aaaagctgga
    15901 atgaatgaat ttgaaacaag aaccaatcgc attttagctt taaatgatta tgaagttgaa
    15961 ttttttaatg aaagggtgat tttagctcct tttaatgctt taaaaaatgc aaattttaaa
    16021 gccgagttta aaacaaatgg tggtgtgctt tatgcaatag gttgtgggaa tatgattgta
    16081 aatttaggtt ttgaagaatt gccacaagac ataaaattgt ggcttaaaaa ttatgtttta
    16141 atggcttttg atggtgtgag tatgcctaaa atttcaagtg ctttaatcac tcgctacaaa
    16201 atagcttatt tttaaaaggc aatggcaatg aaagcaaatg gatttaagca tagagttaaa
    16261 atttacaaaa aagaacaaag caaaaatgag tttttagaaa gcgattttac gcaagattta
    16321 ctttttaaag aagtttatgc aagttgtaaa aatctaagtg cggatgttaa agagttaaat
    16381 agtggcttat ctttagtcgc tacgcatgaa tttgagctta gatttttaga gcttgatttt
    16441 tcttattttc tagtttttag agatgaaaaa tatgagattg taagcttgga agatgaaagc
    16501 caaaacaaga aatttttaaa aataaaagca aggaaatttc aatgaataaa atatctttca
    16561 ttaatacttt acctaaagca cctgatatgg ctaatcctgt tgattttgac aaggatgcta
    16621 ataactttgt taatgcgctt gttccttttt caaaagagat taatgatttt attaaagata
    16681 taaatatatt aagtgcttcc ttgatagagc taaactctaa tatgatctct tatactaatt
    16741 tggctttaga gcaaattgac agtaaaacaa atataaatat cttaaaaata gaaaattttt
    16801 gcaaagattt tcaaaatgtt ttagagcaaa aagctaaaga aagattaaaa gaatttaccg
    16861 atgaatgcct aaccatagtt gaaaacaaag gctatgagat gatagaaaga ttaaatgata
    16921 atggcgttgg agctgattat atcgctattt ctcaatctct aactcatagc ttaagcttag
    16981 aacgctttat tatggaaaga ggttttatta aactaagaaa agaagaagcc ctaaatttag
    17041 atgatgtgaa tttgagttta gaagaacaaa gaagagatat aaaccttgcc caaaaagctt
    17101 tagaaaatat cacaaacata ctctcttcac aaaacgaaat taatttaact ttaaaaggag
    17161 aaaacaatgc ttgataactc aaaaataaga agcacagagc tttatgctac gctaagtcaa
    17221 gctactaagg atgttacagc cataagagag tggctttatg cttcaaaaga taggattgat
    17281 gagcacattt tagaaaattt aaatgctttt gatgaaaaag taaaagaagc tttacaaaac
    17341 tatgaaaact taagcgatga aaaacttaat atgctaaaag aactttataa aaaagtggtt
    17401 tatccttttg attatgtaag tgatgaagaa cctacaatgg ccaatgtgaa tgaaacttgg
    17461 tttaaaactg atgaggctaa aatctttaaa tttattaaaa atccacaaat cactttctta
    17521 caaaaagaaa gacctaaaga aagaaaaatt aatgatattt ggtttaagcc tatggatgat
    17581 gttaatttac aagtaggcga attttatctt tgtgaaaaag tgttaaagaa tgaagcttgg
    17641 ataaacccat ccttgcctga gaatttagaa cctgcattta atcaagaaga agctccacaa
    17701 aatgcaacgc ttggcgatat ttggaaaaaa ggggatgaat attttgttta tattaaaacc
    17761 acaagtggca attcttggac tagccctgaa aacccaagcg aatatacacc tacttatgaa
    17821 agcgaagaag aaccaagtga ggcaaaactt ggcgaaattt ggaaaaaagg aaatgagtat
    17881 ttaatctatg caagagtgac taacgataca gcttggattt taaagtctga tctagggctt
    17941 gatgctttta tttggtttaa tgaagaaaaa gaaaatataa actttatact ttcacttata
    18001 ggggatttga aaaaagaaga tgaaaaagaa gaaacaagca aaaatgaaat aaaggatctg
    18061 gaacaaaatt taagcaataa acaggaagaa ttagaaaata ttaaaaagca aatcgaagaa
    18121 gcattagcaa aagacccacc acaaaatgta gataacctca atgagaaaaa gacgcaatta
    18181 gagcaagaaa tcacaaagat gcaagaagat ttaaatcata aacaaaatga attagaacaa
    18241 atacaaaaag ataaaagttt ggttagtcaa aaaatgctta gtgatgccct taaagaaaaa
    18301 gtaggattaa aaggtgatga gactttaaat ggaaataaga ctttaaatgg agataatata
    18361 tttaatggca caaatacttt taatcaggca ttaacttctc gggccgatcc aacaaatgat
    18421 aatcacttaa ctagaaaatg gtatgtagat tatggtggtg gaattaaaaa tcttggcaca
    18481 actggcagta taaatctaga tttaagacaa gctcaacatt ttattttaac agcaaatgca
    18541 ggaacaagca taggaatagc taattttgga ggagtaggaa aaagcggaac aataactata
    18601 aataattgtc aaaatgtagt agcttttaat gcccctttta aatttagaat agctcaaagt
    18661 ggatttagtg gcactgaaac ttttgcttat ttttgcatag cttcgaataa tgtaagatta
    18721 gtaaggactt aaaatgaact gcctccttct ttctaataat ggtatagcac taaatttacc
    18781 tccatcttta ggaggctcgg ttgcaaatta taattatatg ttaaagctag acatgattta
    18841 taaacaagca gtggtattgc catcaaatat taataataaa gaagtggtta tgttaggcga
    18901 agtttggacg actggaaata tgtctaataa aacttctgca aatactttgc atatcacatg
    18961 gaacaatttt aactctagtg tagaattgca tgctttaagt aaatattaca ctgccaatgc
    19021 aaaaatcaaa gtagagaaaa aattcaattt tggaaatatt gataatttac aaataatgct
    19081 aagttcttgg caaagcggta gtgcaaatgc aagtgctggt tggaacttaa atgatgggga
    19141 tagattaaac ccaagagcaa atttaacatt atactggaat taagaaaggg taaatatgtt
    19201 ttatgattta aaaaataaaa gtttaaaata tgatgatatt tttttaaaag atgtaaaaat
    19261 acaaaacgaa gaaggtgaaa ttgatgcaca agatacttat tttttaagtg cttgcgatga
    19321 taagctttta aaagagcttg gttttgctaa agttaaagaa gaagaaatcc caagttttaa
    19381 tgaaaaaatt gaagaacttc gccaaattca aa
//
LOCUS       DARBAR010000020        19209 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.020, whole genome shotgun sequence.
ACCESSION   DARBAR010000020 DARBAR010000000
VERSION     DARBAR010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19209)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19209)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19209
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.020"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(72..629)
                     /locus_tag="SB815_000518"
     CDS             complement(72..629)
                     /locus_tag="SB815_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEG0906285.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPHS"
     gene            complement(626..1471)
                     /locus_tag="SB815_000519"
     CDS             complement(626..1471)
                     /locus_tag="SB815_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEG0906286.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(1472..2596)
                     /locus_tag="SB815_000520"
     CDS             complement(1472..2596)
                     /locus_tag="SB815_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HEG0906287.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(2605..2916)
                     /locus_tag="SB815_000521"
     CDS             complement(2605..2916)
                     /locus_tag="SB815_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEG0906288.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECEIHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(2931..3800)
                     /gene="sucD"
                     /locus_tag="SB815_000522"
     CDS             complement(2931..3800)
                     /gene="sucD"
                     /locus_tag="SB815_000522"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEG0906289.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(3810..4973)
                     /gene="sucC"
                     /locus_tag="SB815_000523"
     CDS             complement(3810..4973)
                     /gene="sucC"
                     /locus_tag="SB815_000523"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEG0906290.1"
                     /translation="MNIHEYQAKAIFVDNGIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDTTEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(4974..5876)
                     /locus_tag="SB815_000524"
     CDS             complement(4974..5876)
                     /locus_tag="SB815_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG0906291.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSRVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFEDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(5873..8077)
                     /locus_tag="SB815_000525"
     CDS             complement(5873..8077)
                     /locus_tag="SB815_000525"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEG0906292.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYSEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNVA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(8194..10764)
                     /locus_tag="SB815_000526"
     CDS             complement(8194..10764)
                     /locus_tag="SB815_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HEG0906293.1"
                     /translation="MKKKILYIVVFFVVLILALFIVLKNGIVISSIQFDFLKLEQLYI
                     KLDKKLIVRAKNITINETQNSEISSQTHSSDNASTEILKITKNLKYLYTFVKEIDIQN
                     LNIKDNHVRILFKDNEFFIDNDLLFLKLTLQRQNKELIADIKKLLLKDYDLSIDGNLS
                     INTKSEFYYFQGRASGELLDFNASISYKDKNLAYKIEDLNIRNITEIFKRVNKRIELP
                     QSLNLWVAYRAKGEFYHLDYLQGFIDFTKDNYYLDNISASGYVNNVKVRLDDKMNAIE
                     IPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLFDEKKVGIYLRIKSDNLKFDE
                     KLAKALEDYHFSLPFYQKSGKIKSDLELKIDFHDKGEISYSGILALENASISLADFNI
                     TKAFVKLNQNDLNIENASVKNGFLEADFNAKFDLQKQQGNFNTQISRLYFDNAELLDL
                     KNQNVEVKLDYSQNVNISIPQWNLILNFKDGLEANLNNPKILFSFSPLLKKLGFINAK
                     NVYYKTLNFEDFNASVNDAYFKNNLLINGQTPYENDSFDIVKNKGIMEIHTQSDTASA
                     KISSDNKEIHLKNLSYIYRKHSNSSNSTFDIATNTQNISFGGANVALILADSNKTLAF
                     DRVEADLKGNALDLKGSRGNAKFDLYYSSNDLNLNVSNIDDNYLNEFLQKQAVQDGVF
                     NLSIKGSGLEYFDGQIDFKNTYVKDLKGINQLISFIDTVPSLLMFKSPTFNQKGLSLH
                     DGKIIFNRKKDLLSVSAINLNGDSVDIYGLGSANLRLNTVDFSLELKTLKSASEAISK
                     VPILNYVILGKNQEISTNLKIDGSIDDPKFHTEILTDTLKTPFNLIKNIIQLPANLLN
                     "
     gene            10679..11680
                     /gene="mltG"
                     /locus_tag="SB815_000527"
     CDS             10679..11680
                     /gene="mltG"
                     /locus_tag="SB815_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEG0906294.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSNIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLGLDKDILLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSEKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSSYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            11761..12192
                     /gene="flgB"
                     /locus_tag="SB815_000528"
     CDS             11761..12192
                     /gene="flgB"
                     /locus_tag="SB815_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEG0906295.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDNKELQLAVTEEEHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            12202..12696
                     /gene="flgC"
                     /locus_tag="SB815_000529"
     CDS             12202..12696
                     /gene="flgC"
                     /locus_tag="SB815_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HEG0906296.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTISQSAID
                     LLRG"
     gene            12703..12999
                     /gene="fliE"
                     /locus_tag="SB815_000530"
     CDS             12703..12999
                     /gene="fliE"
                     /locus_tag="SB815_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEG0906297.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEINDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            13006..14814
                     /locus_tag="SB815_000531"
     CDS             13006..14814
                     /locus_tag="SB815_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG0906298.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNNQTSTNN"
     gene            complement(14811..15512)
                     /locus_tag="SB815_000532"
     CDS             complement(14811..15512)
                     /locus_tag="SB815_000532"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906299.1"
                     /translation="MISLVKFSDTAIEALRKESEHLYNNTYAVVAHAIGFSRKDIQSD
                     KSFKEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFSTKAQVYINDETKNHKIFTFK
                     MAAKNLAETTKNLKIIQANIKKYSSSSNEFLALEYNKIRSNLGELLRSIEELRVVEDR
                     EKLYLIIKNLQKGKEILKEIDTLTLSNVEHLISVRKITTAEGISILNDTTFAAKIAEE
                     LIGAVEVIFSKDISN"
     gene            complement(15666..15941)
                     /locus_tag="SB815_000533"
     CDS             complement(15666..15941)
                     /locus_tag="SB815_000533"
                     /inference="COORDINATES: protein motif:HMM:NF037997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HEG0906300.1"
                     /translation="MLTGVIQSSTVIMAIIVAALLAQQISLENSLAATLGTSVGGVVT
                     AVLASLSTNIEGKKLAFANCIFNFGIAFLIVLIFPYFIHFLIFYPLR"
     gene            complement(15953..16435)
                     /locus_tag="SB815_000534"
     CDS             complement(15953..16435)
                     /locus_tag="SB815_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HEG0906301.1"
                     /translation="MTNLGIGFKVFSGDLLEKILVKSTDTKIKSILFGTLSTLIMQFS
                     ILVSIVTISFLSAGLISLGAGIGIIFGVNLGNTASSWLIVGLTNIKILMLAIPLLIIG
                     VLFFFQKDSILKGLGNIFIGIGFFFLGVDYIKSGFENFKHIIDLSRFDFAGFKGVFVF
                     "
     gene            complement(16577..17011)
                     /locus_tag="SB815_000535"
     CDS             complement(16577..17011)
                     /locus_tag="SB815_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906302.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDERTLLEPIKMDIYPKF
                     CDLIDEKIREFKENIQNANLTLKNSNQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMDEFEKLKG"
     gene            complement(17011..17328)
                     /locus_tag="SB815_000536"
     CDS             complement(17011..17328)
                     /locus_tag="SB815_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEG0906303.1"
                     /translation="MIENISASLWTKQDLNAYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KGC"
     gene            complement(17325..19151)
                     /gene="htpG"
                     /locus_tag="SB815_000537"
     CDS             complement(17325..19151)
                     /gene="htpG"
                     /locus_tag="SB815_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HEG0906304.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEIDDANK
                     EEQGTSITLYLKDDEFANAYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKAEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGIKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVSINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
BASE COUNT         6555 a         3463 c         2486 g         6705 t
ORIGIN      
        1 taattaaaat ttaaatttta tttgcaatgt gtaaaatttt agaagttaaa ttccgcatga
       61 tgcggaattt attatgaatg tggttttgct tgagtggcgt attttacacc cagatcaaaa
      121 gctttagcat ttgcatcacg agtttttgca ggaaccatat gaagcatagt ttcttttaaa
      181 acatctaaat ctatacattt actcatataa gcagcaattg caagtgcaac aactgattga
      241 gtagccacat ttcctacctc atctttagct atggtaataa tagggatttc aaaaatttgc
      301 cattttttat aatcttcact ttcaggatgt actaaatttg gctctacaac tataatacct
      361 ccttctttta cacccccacg aaaaccttta taacccttat ctgcagtcga aagcataaaa
      421 tctacttccc cttctacagc ataaggaaat aaaatttctt tatcatcgat gataatatcc
      481 accttagtag ggccaccacg cacttgtgaa gtgtaagtag aagccttaaa agcttgacga
      541 ccttctttaa tggctgcttc tgctaaaatt tctcctgcgg tgataacacc ttgtccgcct
      601 tcaccgccaa atcttaattg atatttcatt ttaaagctcc taaatccacc attctttttt
      661 ctttggctgc acgacgtact tcttcataag cgtggcagta ttctggctga gaattatctt
      721 catgtaaaat tcctgttgga aatttatctt ttctttcttc aaaatccatg ctttcaaatt
      781 tagctttatc cacaacgcga tttttaatcc aatcaagcat agctacagct tcgcccattt
      841 tgttttttct gcctagattg atatgacaat ttgaaaaaac atctacaaaa ctataaccct
      901 tatgcgctaa agccttataa attaaatttt caagcttatt agcttcgatc acattacccc
      961 ttgccacaaa agaagctcct gcagctttag ttaattcaca cgcatcaaaa ttagggtcaa
     1021 tatttccaaa ttgagctgtt actgtataaa aaccttttgg agtagttgga gaagtttgag
     1081 aattagtaag cccataaata aaattgttga ttacaatatg agttaaatca atatttctgc
     1141 gacaaccatg tatagtatga tttccaccaa ttgccaaagt atccccatct ccgcttacta
     1201 caataacatg tttactagga ttggctagtt taatgcctgt tgcataagct attgctctac
     1261 catgagttgt atgaactgta ttacaattta cataagaact cattctgcca ctacaaccta
     1321 tacccgaaac aagacaaaca tcatccatat tccaaccaag tttttctatc gcgcggataa
     1381 tacattttaa aacaacacca tcgccacatc cccaacacca ttgagtaggc attttatcta
     1441 ctcttagata ttcatcataa ttaaaagcca tttatatatt ctcctttacc ttagcaataa
     1501 tttcacttgg agtgatagga cgaccatttg cacggtgcaa actaataaaa tcgcgacgcg
     1561 aagttactct ttcaatctct tcaagatatt gtcccatatt aagctcgctt accattactt
     1621 ttttaaattt gcttacaact tcagcgattt ttttctcagc cactggataa agagtaatcg
     1681 gacggaaaag ccccacttta atcccttgct ctcttaatct ttgtatagct tcttttgctg
     1741 aacgactcac gcttccataa gcaatgatta aaaattcagc atcatcaagc atatactcct
     1801 cataagtaca aatatcttct tgattgtttt ttattttacc tatgagtctt tccatatttt
     1861 ttttcactat aactccatct tcagttggaa aacctatatc tccatgatga agtcctgtaa
     1921 catgataacg ataacctgta aagaaaggat ttaaagttgc aggctcattt tctcctgctg
     1981 cataaggttt ataatccttt ttatcgcctt caaatttttt acggttatat actttaatat
     2041 cttttaaatc aggtaaaacc gctttaccat tcatgtgccc tacagtttca tccataagta
     2101 aaaatactgg agtcatatat ttttcagcta aattaaacgc tctaatggtt tctgtataag
     2161 cttcttcaag acttgcagga gcaatagcaa tacttgcaaa atccccatga gttggtgctt
     2221 tagcttgaaa caaatctcct tgtgctacac gagttggaag acctgttgaa ggaccacctc
     2281 tcataacatt tacaatcaca agtggaattt cagcaataaa tgcaagtcct atttgctctg
     2341 cttttaaaga aattcctgga ccgctacttg cagtcatgga ttttactcca ctcattgccg
     2401 caccaatagc cacgctaata cctgaaattt catcttccat ttgtataaaa gttccatcat
     2461 ttgcaggaag catatggctt aattcatgag ctatctcact actaggagta ataggataac
     2521 ctccaaaaaa tttacatcca caatcaatcg cagctttggc gattaaaaca ttacctgttg
     2581 ctataacttc tctcattatt tttcctatgc taattttttg tatttgttat tttttacggc
     2641 tacagctcta tctttagcct cagcagtaag tttggcaaat ttaaattcat ctctttttgc
     2701 caccataata gcaaaatcag ggcaatgtat ctcacactcg gtacagccta tacaggattc
     2761 agggtgtacc acctctatca tttgtcctaa aaccgcatgc acatcatcgc gcatagctaa
     2821 aaccccagcg gggcaatagc taacacaaat attacatgct ttacatctat gctcatctac
     2881 ccaaacaggg gtatcttttg gagctgtcat actcatgttt ttttccttta ttaacctaat
     2941 attttttgaa tttcttcacc aattaaagcc ggagaatcca ccacatgaat tccatagctt
     3001 tttaaagctt cttttttagc tgcagcactt tcatcagcac ttcctactat ggcacctgca
     3061 tgccccattc ttttgccttt aggagcagtt gcacctgcaa tgaatgctac cacaggtttg
     3121 ctaatatttt ctttaataaa tttagccgct tccacttcca aactaccacc aatttcacct
     3181 atcattacaa tagctttagt ttcatcatct ttttggaatt cacttaaaag ttctttataa
     3241 gcaagaccta tgataggatc accaccaatt cctactgcag tagaaattcc ataaccacct
     3301 tgaactacct gattagcagc ttcataagtt aaagttccac tttttgaaat aagccccacg
     3361 caaccttttt taaaaataaa acctggcata atacctaact tacattcttc agaagtgata
     3421 atacctggac aatttggtcc aatgattttc ataccctttt tattagcata ttgcttagca
     3481 aacatcatat cctttacagg cgtatgctcg gtgattacaa ctgcaagctt aatacccgca
     3541 tcagctgctt caatcacgct atcacccaca gcaaaagcag ggacaaagat caagctcaca
     3601 tcagcctttg ttgctttaac cgcatctgca acggtatcaa aaactggttt acctaaatga
     3661 gtttgtccgc ctttatgagg ggtgacacct ccaactatat ttgtaccata agccatgcat
     3721 tgctcagcgt gaaaagttgc ttctttacct gtaaaacctt gaactattac ttttgtattt
     3781 ttattaacca atatactcat tttccatcct tatcctacta aactttttac aagctctgca
     3841 ccgtttttaa gattggttgc tgctttgata tttttaagat ttgaattatc taaaattgtc
     3901 tttgcttctg ctgcgttagt gccatcaaga cgcactacaa ttggaatatt tacctcaaca
     3961 ttcttagtag cttctaaaat tccatttgct atcctatcac aacgaacaat accaccaaag
     4021 atattgataa atataacttt tacattttta tctcttaaaa taatttcaaa agcctttgca
     4081 acagtttctg gagaagctcc cccacctaca tctaagaaat ttgcaggttt tgcaccacta
     4141 taattaataa tatccatagt tgccattgct agacccgcac catttaccat acaagctaca
     4201 tctccatcta atttcacata gcttaagcca aattcagccg cttctctttc agcaggattt
     4261 tcttcagtag tatctctaag ttcagcaatt tcaggatgac gataaagcgc actatcatca
     4321 aaactgcatt ttgcatcaag ggcataaaaa tccccttctg cagttttaat taaaggatta
     4381 atttcaagca tattcatatc tttatccatg taaagcttat aaagtttagc tatcatagaa
     4441 atgagttttt tgccttcatc tttatcaagt cccaaaactc tcgctacttc aagtccatga
     4501 aacattttaa atccaatttg tggatcaata cctacttttg caattttttc aggactttct
     4561 ttggctactt tttctatatc catccctcct tcacttgaag cgataatggt aatttgctct
     4621 gccattctat taaacaaaat agccaaataa tactctttta ctatattagc accactttct
     4681 atataaagtt tttgcacaag tttgccttca ggtcctgttt gatgagttac taaattcatt
     4741 cctaaaattt tacttgcata atcttttacc tcatctaaat tcttagcgat tttaacacca
     4801 ccaccaagac cacggcctcc tgcatgaatt tgagctttaa ctgcccaaac actaccgcct
     4861 aattctttag cattagccac agcttcatct acgctaaatg caacttttcc ctttaaggta
     4921 gggatgccat tgtctacaaa aattgctttt gcttgatact catgtatgtt catttattct
     4981 cctttatatt gatatttgat taaagatttt tctaatttgt ctttttcttg caaactaaga
     5041 tccattttca tgatttcaat cacaccttca agtcctaatc ttgccataac tcccaaggct
     5101 ttgttttgca ctccaaattc tccatgtaaa atcacactca taggtaaaaa ctcgccactt
     5161 cttatagact caagcattct tatacaagca ctagcagggg ctaaataagc tgaagtttta
     5221 agatgtttga ttactttagc tccacctgtt ttaacttcat tttctaaatc ctcaaattct
     5281 tcttcattta aaaattcgct tatattttta tttttaacac ttgcgtaaga ttttaccaaa
     5341 accatatcat cattatgaaa accaataagt cttgtatcca ctcttgacat tttgacatta
     5401 agttttttgg caagttcata cttaaatctt gcattgtcta aaacacccgc catggctata
     5461 attttctttg atgaaaaaat cccgctttca taaagagtat taagtagaaa atccacagga
     5521 ttagttaaaa taataaaaag cggatcttct gtaaaatctt taattttttt agcacaatca
     5581 agcataatgc ttgtatttaa ctgaagcaat tcttctctac tttgcccatc ttttctagca
     5641 aaacctgcac taaaaagcac tatatctgaa tttttggtat gagtataatc tttagtgcaa
     5701 agtaaatcta tatttaaatt taaagcagct atgctttgag taagctctag ttcttttgcg
     5761 taaagcaaat cctcgttaat atctactaaa acaatttcat ttgctatttc tcttaaaatc
     5821 aaagcataag ctacgcttga acctacattg ccagccccta taacagtgat tttcatcttt
     5881 gtcctatttt ttctaaaata gcgttaaaag ttgcacttgg acgcatgatt ttatttgctt
     5941 tttcatcatc aaatttataa tacccaccca aatccacttt cacaccttgt gcatcgttaa
     6001 attcggctct gattttttct tcattagaag aaagctctag ggcaatatct ttaaaaaagc
     6061 tttgaagctc catatcactt gcctgtcttg ctaaatgatt tgcaaaatac attgctaaat
     6121 aaaaatgact tgttctatta tcatcttctt tgacttttct tgatggagct ttattatttt
     6181 caagccattc gcctatagcc tcatcaagac attctgctaa aaccttagct ttatgattgc
     6241 cacacttatt tgcataaaat tccaaacttg cttgcaaagc caaaaattca cccaaactat
     6301 cccaacgcag atgattttct tcgactaatt gttctacttg tttaggtgct gaaccccctg
     6361 ctcctgtttc aaacatagct ccaccattta acataggcac aacagaaagc atttttgcac
     6421 ttgttccaag ctctaaaata ggaaaaagat cggttaaata atcccttaaa acattacccg
     6481 tgatagaaat aacatcttta ccttctcgga ttaactctaa acttcttaaa caagcttctt
     6541 ttggagttaa aatggctaca tttttaccct tttcttttaa acgattttgt accaaagtta
     6601 tcatgatttt attactagct cttttgctat ctaaccaaaa aatagcttcg gctccactaa
     6661 gttctgatct ttctatacct aaatcaatcc aatttaacac tgcatcaaat ttagcctgat
     6721 tagctctata aatatcacct tttctaacct tatgttctaa taaaacttta ccgttagaaa
     6781 ctattttaaa agttccttct tctttagcca caaaggtttt atcgtgcgat ccatattctt
     6841 gagctttttt agccattaaa cctacattag atacactgcc aagttttgaa ggatttaaag
     6901 taccattttt atgcaaatct tcaataaccg cctcataaat agttgcgtaa gtttgatcag
     6961 gaattacggc atttgtgtcc ttttccttac cttccttatc ccacaatctt gcgccatttt
     7021 taagcattgc aggcatagaa gcatcaacga taacatcgct tggaacatga agatttgtaa
     7081 tgcctttatc tgaatttacc atagaaatat ctgcagattt agctaaaatt tcactgtatt
     7141 tttttaaaat ttcatctttt ttgcttgaat tttcgatctt acttaaaagc tcacttaaac
     7201 cattatttgg attaatgcct aatttttcaa attcatcttg aaattcgata aataattctt
     7261 taaaaaatac ttttaccgca taaccaaaaa gtataggatc acttactttc atcattgtag
     7321 cttttaaatg caaagaaaaa agcacatcat catctttgct tgctttaatt tcttttgcat
     7381 aaaattcctg aagtttttgc acatccataa aagtagcgtc taaaatttca tttttttcaa
     7441 gttttaagcc ctcttttaaa atttcttttt taccatcaac gcttgtaaat tctatattag
     7501 ccacacaatc ttgatcgatt aaaaccgctt tttcattaga gaaaaaatcc ccttctttca
     7561 tgtaagaaac acgagttttt gagtttggat taaactcaac cacacgataa ggattgtttt
     7621 ttgcatagtc ttttaccgct tttgttgaac gacgatctga atttccttgt cttaatacag
     7681 gattaaccgc tgaacctaaa actttttgat attttgtttt aatttgcaat tcttcatcat
     7741 tttttggctc atctgggtaa tttggtaaca tataaccctt atcttgcaat tctttaatcg
     7801 ccgccttaag ctgaggaata gaagctgaaa tatttggggt tttaataaga tttgcatccg
     7861 atcttttgac aagctcgcct aaaagctcta aagcatcttc acatctttgt tcctctttta
     7921 aatactcact aaaagtagct aaaatccttc cagacaaaga aatatccgag gtttttactc
     7981 ctatatgtgc cctacttaaa aaagctttca ctataggcaa aaacgaataa gtcgcaagag
     8041 ctggcgactc atctgttaag gtataagtaa tttgcatttt tagtccttta aaatacttat
     8101 ttttattttc atttttaagt atattacaaa taaaaaaaaa tgcaagagta agtttaaagt
     8161 ttgttttagt tttcaaacaa actttaaata tttttaatta agtaaattag caggaagttg
     8221 tatgatattt ttaataagat taaaaggggt ttttagggta tctgttaaaa tttcggtatg
     8281 aaatttaggg tcatctatgc ttccatctat ttttaagttt gtgctaattt cttgattttt
     8341 acctaaaatt acataattta aaattggaac cttggatata gcttctgaag ctgattttaa
     8401 agttttaagc tctaaactaa aatccactgt atttaatctt aaatttgctg atcctaaacc
     8461 atatatatct acactatcac catttaaatt aatagccgaa acacttaaaa gatctttttt
     8521 tctattaaaa ataatctttc catcatgtaa gcttaaacct ttttgattaa aagttggaga
     8581 tttaaacatc aataaacttg gtacagtatc gataaaggaa ataagctgat ttataccttt
     8641 taaatccttc acataagtat ttttaaaatc gatctgtcca tcaaaatact ccaatccact
     8701 tccttttata cttaagttaa acactccatc ttgaacagct tgtttttgta aaaactcatt
     8761 taaataatta tcatcaatat tgctaacgtt taaatttaaa tcattagaag aataataaag
     8821 atcaaatttt gcatttcctc tagaaccttt aagatctaaa gcattgcctt ttaaatcagc
     8881 ttctactcta tcaaaagcca aagttttatt agaatctgcc aaaattaaag ctacatttgc
     8941 tccaccaaaa ctaatatttt gggtattagt agcaatatca aatgttgaat ttgaagagtt
     9001 ggaatgtttt ctataaatat aacttaaatt ttttaaatga atttctttat tatcagaact
     9061 tattttagca cttgctgtat cactttgagt atgaatttcc ataatgccct tattttttac
     9121 aatatcaaag ctatcatttt cataaggagt ttgaccgttg ataagtaaat tatttttaaa
     9181 ataagcatca ttaacacttg cattaaaatc ttcaaaattt aaagttttat aataaacatt
     9241 tttagcattg ataaacccaa gctttttaag taatggagaa aatgaaaata aaatcttagg
     9301 attattaaga ttagcctcaa gtccatcttt aaaatttaaa atcaaattcc actgaggaat
     9361 gctaatgtta acattttgcg aataatctaa ttttacttct acattttgat tttttaaatc
     9421 taaaagctct gcattgtcaa aataaagcct tgaaatctga gtattgaaat ttccttgctg
     9481 tttttgtaag tcaaatttag cattaaaatc agcttctaaa aagccatttt taacactggc
     9541 attttctata tttaaatcat tttgatttaa ttttacaaat gcttttgtaa tattaaaatc
     9601 agccaaagaa atactagcat tctctaaagc taaaatacca ctataagaaa tttcaccctt
     9661 atcatgaaaa tcaattttaa gctccaaatc acttttaatt tttccgcttt tttgataaaa
     9721 aggtagtgaa aaatgataat cctctaaagc tttagcaagt ttttcgtcaa attttagatt
     9781 atcagactta atgcgcaaat aaatcccaac ttttttttca tcaaacaaat catatagata
     9841 aaccttacta gaacttaaat cagcaccatt atagaaagct ttattaaaga caaaatcgag
     9901 cttttgtttg tttaaattta aatcgagttt tggaatttca atagcattca ttttatcatc
     9961 caagcgaact ttgacattat taacataacc tgatgcacta atattgtcta aataataatt
    10021 atctttagta aaatctataa agccctgcaa ataatctaaa tgataaaatt ctcccttagc
    10081 cctatatgct acccaaagat ttaaactctg cggaagttct attcttttat taactctttt
    10141 aaaaatttcc gtaatatttc taatgtttaa atcttctatt ttataagcta aatttttatc
    10201 tttgtaagag atgcttgcgt taaagtcaag caattctcca cttgctctac cttgaaaata
    10261 ataaaactcg ctcttagtat tgatacttaa atttccatca atacttaaat cataatcttt
    10321 taataaaagt tttttaatat cagctataag ttctttattt tgacgctgta atgttaattt
    10381 taaaaacaat aaatcattat ctataaaaaa ttcattatct ttaaataaaa tacgcacatg
    10441 attatctttt atatttaaat tttgtatatc aatctcttta acaaaagtat atagatattt
    10501 taaatttttt gttattttta aaatctctgt tgaagcatta tcagaagagt gggtttgtga
    10561 tgaaatttcg gaattttgag tctcatttat agtgatattt tttgctcgta caattaattt
    10621 tttatctaat ttaatatata attgttccaa ttttaaaaaa tcaaattgga tactagagat
    10681 gacaattcca tttttaagca ctataaacaa agctaatata agcacaacaa aaaatacaac
    10741 aatatataaa attttctttt tcatacgcaa cttctttttg atatttattt tggggatttt
    10801 ttattatcta actcagcctt taaaaagcaa ttctgtggta tttattcccc aaggttcaat
    10861 ttctcaaatt ataacatatt taaagcaaaa taaatatcag atgagtaata ttgataaata
    10921 tattttattt tttttaggac accctcaatc aggctggatc aacataggta caaaagattt
    10981 aaatagagct gaatttctac ataaactcac tattgctaaa gcagcacttc aaaccattac
    11041 tcttatccca ggagaaacaa gcgtaatctt tctagaacaa gcagccaaac aacttggact
    11101 tgataaagat atacttttaa aagaatttca agctcaagct ccttatgatg aaggagtttt
    11161 tttaccagaa acttataaaa tcccgaaagg cattacagaa aatctactca ttcaaatgct
    11221 tttaaaccat gctgaaattt ccaataaaaa aacttctgag aaaatttttg gtgattataa
    11281 tccaaaaaaa tggcaccaat atatcatcat cgcttctgta atacaaaaag aagctgctaa
    11341 tgacaatgaa atgcctatag ttgcaagcgt aatttacaat cgacttaaaa aaggtatgaa
    11401 acttcaaatg gatggaactt taaattatgg aatttattcc catgtaaaag ttaccccaca
    11461 aagaataaga caagataata gctcttataa tacctataaa tttacaggat tgcctaaaga
    11521 agcggtttgt aatgtttctt tagctgctat tcgtgcagct atttttcctt taaagacaga
    11581 ttatttatat tttgtgcgtg ataaaaatac tggagttcat atttttagca caaatataga
    11641 tgatcacaat aaagccataa atttacaaaa aggaaaataa tttttgatat ttttatacaa
    11701 aatagttaaa ttggaacagt atttgcttgt taatattaaa aattataaaa aggataaaaa
    11761 atgattaacc catttaaatc aaaagaactg gtcactggtg ctttagcggg tagaaatcta
    11821 agaaatcaac tcatcaatgc caatcttgca aatgttgata ctccttttta taaagcaaga
    11881 gatattgaat ttgaaacagc tttggtaaat cgtgcaaatg aaattttcaa aaaaaatgat
    11941 aataaagaat tgcaattagc cgtaactgaa gaagagcatc aaaaaccttg gaaattccct
    12001 gatcctagta aatctactat ttacttaaga gatggtcatt tagcaagaaa tgatgcaaat
    12061 actgttgatc tagatgtaga aaccacagaa atgagtaaaa atacagttat gataacagct
    12121 cttgatggag ttttaagaag acaaagcaat atctttagtt ctatacttga tgcaagctct
    12181 aaattaagtt aaaggtaaat tatggcatac ttaagtgatt ttgatattag tggttatggt
    12241 ttaagtgctc agcgttttag aatgaatgtt attagctcta atatagctaa tgcaaacact
    12301 acaagaacag ctgaaggtgg gccttataga agacgcgaag tgatctttaa agcaacagat
    12361 tttgataagc ttttaaatga gcaaattaac aaagataata attttttaaa atatgaaaat
    12421 cctttaaatg atccaagttc gccagaagaa gctaaacctg ctattcaaag tgttgtagtg
    12481 gataaagtgg tcagagatga caaagatttt cgtatgaagt atgatccaag ccatcctgat
    12541 gcaaatgctg aaggttatgt agcgtatcca aatgtaaacc ctgttattga aatggcagat
    12601 ttgattgaag ctacaagagc ttatcaagcc aatgtaagtg cttttacaag tgcaaaaact
    12661 atatctcaaa gtgcgattga tttattaaga ggataataaa aaatgaacaa tattaatgat
    12721 ttaagattaa ataataatat ttcaaatacc aacaaaagtc aaaattccac aggaattggt
    12781 gatgaatttg ccaagatgct taaaaatgaa atcaatgatt taaataaagc acaagaaagt
    12841 ggagaagctg caatgacaga cattgccaca ggacaagtaa aagatttaca tcaagcagct
    12901 atagctatca ctaaagctga aagcagcatg aaatttatgc tagaagtaag aaataaagca
    12961 atcagtgctt ataaagaaat cacaagaact caaatttaaa ccctaatgca agaatataaa
    13021 aaaaataggg tttcaaaagt tgcctttgcc tactgcatgg cacttttgtt tatgattatt
    13081 tttatcagct ctactttttt tcttacatca aaacgtcata tacctaacac tgaaaaagat
    13141 caatacgctc ttgctctaag aggatcgatt ataaccaaag ataattttac tatcacaagt
    13201 tctaaacaaa tttatcgtgc tgaaattgat cttagaagca ttaacaaaga taaatttgat
    13261 ctatttttaa agctttttca aatttatagt gggataagta acgatcaagt agcagatatt
    13321 aaaaaaagaa tgcaaaatca aaaaaaacgc tcttataatt ttgttctttt acaaaactta
    13381 gactccaagc aagcaagcta ccttaaagat cttgctaaaa aactttatat acaaggtttt
    13441 ttcaaagctt ttacaaataa ctcaggaaga gttgaaacaa gaggattaaa tatcatcgaa
    13501 catgaagaag atagaattta catgtcaaaa gattctttta ctcctattat cggttatact
    13561 aaaatgatat tagatccaga aagtggaatt ttaaaaaata taggagttaa aggtttagaa
    13621 aaatactacg atgcatgtct aagccctgtt caaaatgaaa aaattcaagg acttaaagat
    13681 ataggtggaa atattatttt aaatctaaat tcactacaac aaaaaaagat caatggttgt
    13741 gatttatatt taaatctttc tttaaaactg caaaaaagta tagagaaagc tatagatcaa
    13801 agaaatgagg atttaaaagc caatgaaatc atcgttgggg taatggaaag taaaacagga
    13861 agaattttag ctctagcaag ctcaaggcgt tatgacccac aaaatcgcgg aaaggatcta
    13921 tcagttctta atgcaagcgc tatagaatac ggctatgaag caggttctgt tatcaaacct
    13981 tttatcttta caacagcctt aagacttggt aaaataaaaa tggatgaagt gattaatact
    14041 tatggcggtt cttacaagct aggacgtttc accatcaaag acgatcacaa aatggacaaa
    14101 atgactatgg aggaagttat aagatattct tcaaatatag gcatgataca aattgctaaa
    14161 aggcttaaca atatagaaat cgtatcagga cttaaaatat ttaaatttgg cgaaaaaagt
    14221 ggtattgatc taccctatga acaaaaagga gaaattccaa atcctaagcg cttaagagat
    14281 atagaaaaat ctgttttaag ttatggttat ggacttaaaa caacctttat acaactcctt
    14341 gcagcttata atgttttcaa caatgatggg ttttatatca caccacgttt agctgaaaaa
    14401 ttctatcaaa atggacgctt tacaaatctt gatgatgatg taaaaaaaga aaaaattctt
    14461 tctagcgaag ccgctaaaac gatgcaaaat gttcttataa atgttataga aaaaggaaca
    14521 ggaaaaaagg caattacaca aggtattatt gcaggaggta aaacaggaac ggcaagaata
    14581 gccgaaagac aaggttacac ctcaaatcgc tacaatgcat ccttttttgg ttttgcaaat
    14641 gatttaaatc acgcctatac cataggagtt ctcgtaagac atcctactaa accttatagt
    14701 tattatgctg cacaaagtgc tttgcctatg tttaaagatg ttgttgatat tttaatcaat
    14761 gaagaatttc taacgcctat acaagacaat aaccaaacta gcacaaacaa ctagtttgat
    14821 atatctttag aaaatatcac ctcaacagca cctataagtt cttcagcaat cttagcagca
    14881 aaagttgtat cattaagtat tgaaattcct tcagctgttg tgatttttct tactgaaata
    14941 agatgttcaa cattgctcaa ggttaaagta tcgatttctt ttaaaatttc ttttcctttt
    15001 tgaagatttt taataatcaa ataaagcttt tcacgatctt caacaactct aagctcttcg
    15061 atacttctta aaagctctcc taaattcgat ctaattttat tgtactctaa agccaaaaat
    15121 tcattagaag aactagaata tttcttaata tttgcttgga taatttttaa atttttagtc
    15181 gtttcggcta aatttttagc tgccatctta aaggtaaaaa ttttatgatt ctttgtttca
    15241 tcgttaatat aaacttgtgc tttagttgaa aaatcgataa tagcttcaaa aagaaccttt
    15301 atcctagttt gatacaaata gtccaaatcc acatttttac taaaccactt tttattttct
    15361 aaaatttctt taaaactttt atcactttgt atatctttac gactaaaacc tatagcatga
    15421 gcaacaactg cataggtatt gttataaaga tgctcgcttt ctttccttaa agcttcgatg
    15481 gctgtgtcac taaatttaac caaactaatc aagatataaa ggcttgtctt tattcttatc
    15541 tttaggagct tttactattt tatttaaaaa aacaatttaa ggagtaaaga atgaaaaaaa
    15601 cgcaacacca attaaattaa acaaagtgtg aaataatgcc actttcaaag ctatatcttc
    15661 tatgtttaac gcaatggata aaaaattaag aaatgtataa aataaggaaa aataagcact
    15721 attaaaaaag ctataccaaa attaaaaata caatttgcaa acgctaattt ctttccttca
    15781 atattggtac ttaaagaagc taaaacagcc gttacaactc ctccaacact agtacccaaa
    15841 gttgctgcta aggaattttc caaactgatt tgttgtgcaa gtaaagcagc gacaataata
    15901 gccattataa ctgtgcttga ttgtataact cctgtaagca aagcacctaa tcctaaaaaa
    15961 caaaaactcc tttaaaacca gcaaaatcaa aacgagaaag atcaattata tgtttaaaat
    16021 tttcaaaacc acttttaata taatccacac ccaaaaagaa aaaacctata ccaataaaaa
    16081 tattacccaa accttttaaa atactatctt tttgaaagaa aaataatact ccaataatca
    16141 aaagcgggat agccaacatt aaaattttaa tatttgttaa accaacaatc agccaagaac
    16201 ttgccgtatt tcctaaattt actccaaaaa taatccctat gcccgcaccc aaagaaataa
    16261 gccctgcact caaaaaagaa atcgtaacaa tagaaactaa aattgaaaat tgcataatta
    16321 aagtacttaa agtaccaaaa agtatacttt ttatctttgt atcagttgac tttactaaaa
    16381 ttttttcaag caaatcacca ctaaaaactt taaaacctat acctaaatta gtcattccaa
    16441 taagaagtat tgccactcct gctaaaagat tagcaagctc gtcataacga attaaaataa
    16501 aaatcagaac taaagtaaaa atacttcatg aaataaattt aaaatatttt aaagaatttc
    16561 cttcttcttg caatgcctaa ccttttagtt tttcaaattc atccatcaga aattctctta
    16621 aattttcagc ttcttcttcg cctttttcta gatactcaag caataaattt tctaattctt
    16681 ttaaaaaaga aaaaagttca ttttgccaga tactatcgtt tttattgctc aaattcatgg
    16741 tttgtatgaa agtcaactct ctgcttaaat ccccaagttt ttctaaaaat tcatcttttt
    16801 gattagaatt ttttaatgtt aaattagcat tttggatatt ttctttaaat tctctgattt
    16861 tttcatcgat taaatcacaa aattttggat aaatatccat tttaataggc tctaaaaggg
    16921 ttcgctcatc tatatttaaa gtaagctttt taacagcaaa ataaagagct aaaaaagaca
    16981 aagctgctat gagtaaataa attcctagca ttaacaaccc ttaagggcta gcattccgcc
    17041 atctaaattg atgctttcaa gtcccaattt ttcagctata aattcagctg caaccatgct
    17101 tctatggcca ctacgacaaa taaaagcaag ttttttactt tcatctcttt tactttgaaa
    17161 ttcatctaaa aatttagcat ttaaaagccc ttgattatca tataaagcca cacattgcgc
    17221 attaggtaaa ataccttctt cccattctaa aggagtacgc acatcaaaaa tttgatatgc
    17281 gtttaaatct tgctttgtcc aaagacttgc agagatattt tctatcatga aaaagccttg
    17341 ttgatgattt ttgtaaggct tgcattaaat tcagcaggat tatccactcc cataccttcg
    17401 cttaattttg ccatatttaa aactaaggtt gctatatctg cactaaagct ttcgttgttt
    17461 ttaagacctg taaaaatagc gtgttttgga ttgatttcta aaataggttt gaaattttgt
    17521 tcttgaccca tttgttttaa gagttgttgc atagcaaaat caggtttatt tttatcataa
    17581 actatacaac ttggactatc tttcaaacga ctggttagtc ttacatcttc aacttgatct
    17641 tttagaagtt ctttaaattt agctacaagt ggagcaaaag tatttttttc ttcgtcgctt
    17701 agttcatttt tatcttctac ttgattaatg gatacaaatt ttaaaccttc aaattctagc
    17761 ataggagtta ctaaagaatc aatctcatcg tccatgagta aaacttctat atttttttgt
    17821 ttatactctt caagtaaagg ggaggttctt aataaacttt cattatttcc tgctatataa
    17881 aaaatttcct tttgttcgcc ttgaaggtca tttttatact cctctaaaga gcgtaaattt
    17941 tcacctttag tgcttttata aagcatgagt tttaaaagac tatctttttc tccgccaaaa
    18001 ccataaagtc cttcttttaa taccttacca aaggttttaa agaaagataa gtatttttct
    18061 ttatcattgt ttttgagttt ttcaagttca cctaaaatct ttttaacgct agcttctttg
    18121 atacctttta aaatttgatt ttcttgtaaa atttcacgac ttacattaag tggtaaatct
    18181 tctacatcga taatcccccg cacaaaacgc aaataagttg gtaaaagttc tttatcgtca
    18241 tcgctgataa atacgcgttt tacataaagt tttaagccac tttgataatc cacacggaat
    18301 aaatcaaaag gtgcattttg tggtatgaaa aataaagaat tgtattctaa ttttccttca
    18361 cttttagtgt gaagataaag taaaggtttg tttgaatcat gaaaattttg ctcataaaat
    18421 ctttcataat cttctgcttt aaggcttgat ttttgcattc tccataaagc attggcttta
    18481 ttgatttgag aaattttaag ttcagttttc ccttcttctt cgccttcttt agcaggagta
    18541 aattcttctt tttccatgaa aattggaaat tgaatgtgat tagagtattt ttctataatg
    18601 ctttcgattt tataagcatt agcaaactca tcatctttta aatataaagt aatgcttgtt
    18661 ccttgttctt ctttgtttgc gtcatcaatc tcataaccat ttgcatcaga actccaaaga
    18721 taagctttat catctaaagc ttttttactt aaaacttcga ttttactagc caccataaaa
    18781 gcagaataaa aacctactcc aaattgtcct atgagttgag aatctttttt agcatcaccg
    18841 cttaaatttt ctaaaaagct tttagtaccg ctttttgcta tggttccaag gttgttgata
    18901 agatcatctt tatccatacc tatgccatta tcactaatac ttaaagtttt tttatcttta
    18961 tcaattttga tttcaatttt aggttcgaat tttaagcttt tatatttatc atcacttacg
    19021 cttaaaaaat taagcttatc taaagcatcg cttgcgtttg aaataagttc tcttaaaaaa
    19081 atttctttat tagaatataa agagtgtatc ataagctgta aaagctgatt aacttcggtt
    19141 tgaaattgca ttttgattcc tttgtaattt tttaaagtgg tattttagca aaaaatacaa
    19201 attctaaag
//
LOCUS       DARBAR010000021        18890 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.021, whole genome shotgun sequence.
ACCESSION   DARBAR010000021 DARBAR010000000
VERSION     DARBAR010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18890
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.021"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..278)
                     /locus_tag="SB815_000538"
     CDS             complement(<1..278)
                     /locus_tag="SB815_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG0906305.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKCIKTLRLRLNEKGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKKRFEKKALKDDELIFLAKKYQIIFDE"
     gene            complement(254..1570)
                     /locus_tag="SB815_000539"
     CDS             complement(254..1570)
                     /locus_tag="SB815_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG0906306.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGIGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQAISIANEIIVGKLIGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            complement(1660..2888)
                     /locus_tag="SB815_000540"
                     /pseudo
     CDS             complement(1660..2888)
                     /locus_tag="SB815_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
     gene            complement(2950..3690)
                     /locus_tag="SB815_000541"
     CDS             complement(2950..3690)
                     /locus_tag="SB815_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEG0906307.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            complement(3687..4775)
                     /gene="pstA"
                     /locus_tag="SB815_000542"
     CDS             complement(3687..4775)
                     /gene="pstA"
                     /locus_tag="SB815_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEG0906308.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGIPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            complement(4772..5686)
                     /gene="pstC"
                     /locus_tag="SB815_000543"
     CDS             complement(4772..5686)
                     /gene="pstC"
                     /locus_tag="SB815_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEG0906309.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFIITLIINMFSVYLINRFHKRKNL"
     gene            complement(5696..6691)
                     /locus_tag="SB815_000544"
     CDS             complement(5696..6691)
                     /locus_tag="SB815_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG0906310.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAA
                     IHNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGIMIGY
                     DGIVLAQNKTNALLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            6871..7374
                     /gene="ctf"
                     /locus_tag="SB815_000545"
     CDS             6871..7374
                     /gene="ctf"
                     /locus_tag="SB815_000545"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HEG0906311.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            7417..8793
                     /locus_tag="SB815_000546"
     CDS             7417..8793
                     /locus_tag="SB815_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HEG0906312.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNDYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIKGNVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPSNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGMPRTIVNILIAFILSGMWHGNTLAFIVWGLLHGIGIVF
                     IHLLALSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNFFQIPS
                     YNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            8794..9804
                     /locus_tag="SB815_000547"
     CDS             8794..9804
                     /locus_tag="SB815_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HEG0906313.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQESKSTDENLSKIDKVLNTLENDENTS
                     HKETNLTLIQDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSLS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            9791..10969
                     /locus_tag="SB815_000548"
     CDS             9791..10969
                     /locus_tag="SB815_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEG0906314.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKIKGAKINLDTTLDKKKFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(10972..12342)
                     /locus_tag="SB815_000549"
     CDS             complement(10972..12342)
                     /locus_tag="SB815_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEG0906315.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMKELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLSN
                     DQNRNLLIKNLQDLLARQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFAYEQLLISYEQVLQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDKN
                     LEFPKY"
     gene            complement(12344..14269)
                     /locus_tag="SB815_000550"
     CDS             complement(12344..14269)
                     /locus_tag="SB815_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0906316.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNEQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLILKTMPKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRFYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(14269..15441)
                     /locus_tag="SB815_000551"
     CDS             complement(14269..15441)
                     /locus_tag="SB815_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEG0906317.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNEDEELIVSSSADGLAPKMKLRF"
     gene            complement(15520..16710)
                     /locus_tag="SB815_000552"
     CDS             complement(15520..16710)
                     /locus_tag="SB815_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG0906318.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMTT
                     QFVNNIQSVISRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            complement(16719..17600)
                     /gene="ppk2"
                     /locus_tag="SB815_000553"
     CDS             complement(16719..17600)
                     /gene="ppk2"
                     /locus_tag="SB815_000553"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HEG0906319.1"
                     /translation="MQENNSPKAQAVVKKNEIYVSVKRKKSTIEYEKDLKNLQIELLK
                     FQNHVKAKGLKVLILIEGRDAAGKGGAIKRLIEHLNPRGCRVVALEKPSDVEKTQWYF
                     QRYIAHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISNSDII
                     FFKFYFSVSKDEQKKRFEKRRSDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVEYPNKKTGDFSKIDAKLVRSGEEEIRKMEAN
                     LEKLDSKKADEKIKDLD"
     gene            17695..>18890
                     /locus_tag="SB815_000554"
     CDS             17695..>18890
                     /locus_tag="SB815_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HEG0906320.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVVGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFF"
BASE COUNT         6487 a         3271 c         2416 g         6716 t
ORIGIN      
        1 ttttcatcaa aaataatttg atatttttta gctaaaaaga ttaactcatc atcttttaag
       61 gctttttttt caaatctttt ttttgcctca ttcatccaag aacttgattt atctaaaaac
      121 tcataaacac ttttaaaggt gcaaaaataa ggaatactaa gaacaaattc acccttttca
      181 tttagcctta atcttaaagt ttttatgcat tttttagaat aaaaatagca ctcatcttta
      241 taaataaatg attttaaact agagctttgc cttgccattt tttacttttc catctgtatg
      301 aatttaccat tccacgcaaa aattcatctg cacaaaatcc tatccaaacc cctaaaattc
      361 caagattaaa atgaaaacaa agcacataac ccacaggcaa agataccccc atcataaaaa
      421 caagtccgct aaaaaatgga aacttagcat cgccacttgc gcgcaaggaa ttaaccataa
      481 ctatattaaa agttcgtgaa atttcaagaa agattgaaag agcaaataaa ggtatcatta
      541 aattttttag ctcttcttta agccctaaaa tttgcatagt aaaatcttga caaagatagt
      601 ttaaaaacgc cactaaagca ctcgctatta cactaaaata taaagcacgc caagcatgtt
      661 tgtaagcgat attttcatat ctagcaccga ttaatttacc tactatgatt tcattagcta
      721 tgcttatagc ttgtcctata agcatgataa gcattgaaat ttgaaaataa atcgtttgca
      781 cactcaaact cgcctcacct aagcttgcta caaaagcaaa agctatagta tattggacta
      841 tccacaaaag attctcccct gctgaaaatc ctcctatatt taaaaccttt tttaaaactt
      901 ctttttcaag ttttatcatt tctttgattt taagatgaat tttaagttta taaaaaagta
      961 tcgcaaacaa agcaactata gcaacaatgc gagcaaaaat attactaagc cctattccaa
     1021 aaagttctga ctttgtataa tgcaaaacat aataatttcc acaaatcacc actatatcca
     1081 tcaaaaaacc tataaacatg acccaataag ccatattata aacccttaca atagcagcta
     1141 aaacaatacc tatggcatca aaaaacaaac aaattgcaag catatgtaag taaatttcgc
     1201 tatctttgag caattcttgt ggaattttta aaagataaag caaatactcc ccatgccata
     1261 aaataagcac accgcataca aagcctaaaa gtgcatttaa gaacaaactt tgatgaatca
     1321 cttttcttgc taaaacatga tcttttgcac caattgcttg tgcgatcacc acgctacaac
     1381 ccacacttaa aaatgaaaaa atagtgataa aaagatctaa aatttgattt ccagccccca
     1441 tagcaccgac aagaaaatta gaataatgcg acaccatagc ggtattgata atcacggtta
     1501 aatacttaga aagcaaatcc caaaatatag gaaaactaag tcttgttaag gagagttgtt
     1561 tttttgccat gatattatct tatctctttt tttaaatatt tcttttaaaa aacaattcta
     1621 cttaaaaatt acttttttaa atataaatat ttaatatact caatttgtta tatttaaaat
     1681 aatttgatga ttttcttctt tgaaagtata cactagctca tcacatttat atgagacttc
     1741 cttcttgcaa attttatctt gcaaaggttc ttttaatatt tgcaataaat gttttttaaa
     1801 aaataatttt gtgctcaatc ccattccatg atttaaattt ttaataaact tattatcaac
     1861 ttgtgaaata gcaaaaaatt ctactttaaa atttaattct tttaaaatat gtacaaaatt
     1921 ttccttattt ttaaaaggag atctttcatc aaaaatacta tgatataaaa tatattttgg
     1981 atttgggtat aagctttgta ttattagatg ttctttgttt aatggttctc ttatgatttt
     2041 tctagcattt gaaaaataat tttttgaaaa tttattatta ttccaataag ttttatcact
     2101 taaatataaa aatatatttt taaataaagt atcatcatat gttccatgat atctagtaaa
     2161 atcgatttct tttccaaaac ctataagtct aaaaatattt ccaaacaaat taacaaaaga
     2221 agaattatct aatataaaat caatactcca aggagctatt tttgcacata aatttgctaa
     2281 atatccgcca tatgaatttc caaacaaaat cgttctaata ccccccccct cattagttta
     2341 aatggagaat tttcttttat ataaaaaata gcatttaaaa tatccatagc ttgcattata
     2401 ccaaaatttt gatattcatt tttaaatggt aaaaaactta catgtgtttt taacttatag
     2461 ttttgatgta attgttgatt taattttaat ttttgaattt cttgatctat tcttataaaa
     2521 gcattattta gattttcata agaatttata ccataaacat ttatacattt taaatttata
     2581 gcctttaaac tagtatctaa aatgaattta tctatatcat ccaaataaaa actagaaccc
     2641 aaatgaggtc tatttcctat acaatgatag ttaatattaa taacagcaac tttataattt
     2701 ctagtcaaat aatcatcaat ataaatataa ctattcatat cttcagcacc acctggaata
     2761 atacaaacaa tagcttctat ttctttacta tcatcataag tcaatctaaa ttctaattta
     2821 cttccccttt tgatatttaa ttctacatca tcacaagaat ctatagaata aatttggttt
     2881 ataatcatat taaacctttt tttggaaatt tttaattaat tatatcatca aatttccaaa
     2941 aaataaatct cacccaaaag caccgcttaa gtaagccttg gttttttctt gttttggatt
     3001 ttcaaaaaat tctttacttt caccaaattc tataagctca cctaggtgaa aaaatgctgt
     3061 ataatcagct acgcgtttgc cttgttgcat attatgcgta accatgatca tagaaagatt
     3121 atgacttaat tcttttaaaa gctcttctat aacacctgag ctaataggat caagtgcgga
     3181 agttggctca tctaaaagca agagcttagg ttttattgct aaagctcttg caatacaaag
     3241 gcgttgctgt tgtccgcctg aaagagctag ggcattttgc tttaatttat ctttaacctc
     3301 ttcaaaaagc cctacttttt gcaagcaatc caccaccaaa gcttcttctt catctttgtt
     3361 tttaatcata ccatgaagtt ttggtgcata agagatgttt tcataaatgc tttttacaaa
     3421 aacattaggt tgttgaaaaa ccatgcctac atttttacgc aaagctacta catcttgatt
     3481 tttaacatct tttccttcaa tttccactaa accatcgatt tttgcgattt tatcattcat
     3541 tctgttaaaa caacgcaaaa aagtggattt accacatcca gaagcaccga tgagtgcggt
     3601 aattttgttt tgttctattt gcatattaat atcaaataaa gcttgttttt ttccataaaa
     3661 taaatttaaa tttgttgttt ttgctatcac tttaattttc cttgaaaata ttttcttaat
     3721 aatatcgcac taagatttaa cacgactaaa agtcctaaaa gcacaataat acccgctgcg
     3781 gttctttcta aaaatgcacg ctctggcata gccgaccatg agtaaatttg agcaggtaaa
     3841 acactagttg gatcaaaaat cgaactagct acatcaggga taaatgctat cataccgata
     3901 atcatcaaag gtgcagtctc gcctatagcc cctgctaaag tcaaaataga acctgttaaa
     3961 atcataggca tagccaaagg tagcataatg ccctttacca tttgaacctt tgtcatgcct
     4021 aaggcataag cggcgttttt catgttaatg tccacacttt ttaaagccgc tttggttgaa
     4081 acaatgataa taggtaaact catgatcgcc aaagtaagcc cacccactaa agcacttgag
     4141 cgaggtattc caaaaagatt gataaacact ccaagtccta aaagtccaaa caagatactt
     4201 ggaatacttg caaggttgtt aatacacact tctataaaat gtgtaaggat attttgtggc
     4261 gcaaattctt ctaagtaaat tgccgctgca acgcctatag gaacactcac aaccatacag
     4321 acaagcataa caagcaaagt ccctacaact gaagataaaa ttcctgaatt ttcaggagat
     4381 tttgagtccc catttaaaaa gaaattgcta ttaaatttaa gctctatctc gcctttttgc
     4441 acaagatcat cgactaaagt tctttgtttt tcactaaggc gattatattt ttgcttcata
     4501 tattgatcta cttctgaatt tgccaaaagc caagattttt cagtgatttg ccctgttctt
     4561 atttttcttt gttctgcgcg agataaaaga tcataagcag gagaatttct attagcctct
     4621 acaaaaatat aggtttgctt aaaagcagga aatccaagat aagccacact tcctaaaaag
     4681 atacaaagaa aaattaaatt aatataaagc cccattttgc aaagtctttt aaaagacttt
     4741 gaagcttttt gtcttttttt aaaaagtttt ttcataaatt tttccttttg tgaaagcgat
     4801 tgatgagata aacgctaaac atattgatga ttaaagtgat gataaaaagc accaaaccta
     4861 aagaaaaagc actcaaagcc aaagaactat caaaagcttg atctccactt aaagcttcta
     4921 cgatttttac cgttaccgtt gtcatatctt ctaaaaaatt taaagttaaa tttggacgca
     4981 aagaagctgc catcaccact atcatagttt cgcctaaggc tcttgaaagt cctaaaagac
     5041 aagctgcaac tataccagga atagcctcag gtaaaatcac ggcaaaaacc acttcttttt
     5101 ttgtcatacc taaagcataa gcgccattaa tccttttctc gcttactgct tcaatgcaat
     5161 cttgagataa cgaagccact ataggtacta tcatgatccc catgataaaa cctgcgccta
     5221 aagcactttg aaagcttgct tgtatgccaa ataaagaaaa aaaccacact ataaaaggcg
     5281 ctacaactat agccgcaaaa aatccaaaaa caacagtagg aatccctgca atgatttcta
     5341 aaataggttt taagtaattt ttagattttt tgccagcaaa aacacctaaa tatatagcac
     5401 acataacccc taaaggtaaa gccgttagca tagcaatcaa tgaaatataa aaagttcccc
     5461 aaaaaagcga tagcgcccca aaaacacctt gtttactcgt gccatctgca ttcataaaag
     5521 ctgcatcagc tgcccactga cttgagaata aaaaggtaac aacgctttct ttttgaaaga
     5581 attttaaagc ttcaattaaa attgtaagca tgatagcaaa acttactatc acgcttacaa
     5641 aagcacataa aaaaagtgca aatttgatta ttttttcttt taacaaagtt tttccttaaa
     5701 aaacttttcc agcttttaca agctcatcat ttaaaatttt tctatcttct acgtgttttt
     5761 gagaagcttt taatttatca tcactcaaag gaacaagtcc tattttttca agctctccac
     5821 cactttttgc caaatcatca ctcatataaa tttttgcaaa atcaaaggct tcttttggat
     5881 ttttcttagc attgatataa ataaacaaac ttcttgcaag ttcgtatttt tcatctgcga
     5941 tgctttcttc gcttggcgta acaccatcta tattagcagc attgattttg tctgaattgc
     6001 tcactaaaaa gctataacca aaaattccaa aagcatcctt atcaatagta agttttgaaa
     6061 cgattagatt atcattttca ccacttggga tataagcacc atcttggcgt atggttttat
     6121 actcgccttt atactcagga atttttttag acacatcact cattacaagc tcttctatag
     6181 tatctcttgt tcctgaactt gatggtggac cataaacact aattttacga tttggtaaat
     6241 ttttattgat ttgattccag tttgtataag gatttggtat aagttttcca ttttgtggaa
     6301 tttcttttgc taatgctaag aaaagttctt tttttgtgat atttaataga gcattggttt
     6361 tattttgagc taaaactata ccatcataac ctatcataat ccctactata tcagttaccc
     6421 ctgctttttt gcaagtttca aattcgctta atttcatagg tcttgaagca ttagaaatat
     6481 cagtagttcc ttcacaaaat accttaaatc caccccctgt tcccaagctc tctactatag
     6541 gagtttttgt attgtgaatc gctgcatact cttcagctac aaaagaagta aaaggataca
     6601 cagtcgatga acctgcgatt tttaaatctg ctgcatttaa agcaccacaa agtgcaagac
     6661 ttgccacact taaagataga atttttttca ttttttctcc ttaactttaa aaaagtaatg
     6721 gaagtttaaa aaaacttgga aacattttgg aaacattttt tattttgtat ttttcttaaa
     6781 tataattttt aactatcaaa aaatttagct tgtttttaaa aaaataatat atcattataa
     6841 aacattttaa attttaataa ggagataaga atgctttcca aagaagttgt aaaattactc
     6901 aatgaacaaa taaacaaaga aatgtatgca gcaaacttat atcttagtat gagttcttgg
     6961 tgctatgaaa acagtcttga tggagctgga gccttcttgt ttgcacatgc aagcgaagaa
     7021 agcgatcatg ctaaaaagct tatcacttat cttaatgaga cagattctca tgtagagctt
     7081 caagaagtaa aacagcctga acaaaatttc aaatctttac ttgatgtttt tgaaaaaacc
     7141 tatgaacatg agcaatttat cacaaaatca atcaatactt tagttgaaca catgctaaca
     7201 cataaagact attctacttt taatttctta cagtggtatg taagcgaaca acacgaagaa
     7261 gaagcacttt tccgcggtat agttgacaag attaagttaa ttggagaaca cggaaatgga
     7321 ctttatttag ctgatcaata catcaaaaat attgcattaa gcagaaaaaa ataatctttg
     7381 ccctactatg ggcaaatctc gctttggatt gaaggtatga cttatttttc tctagaattt
     7441 agtattttaa tgatagcttt ttttgctatt tattggactt ttaaaaatga ttacaaaata
     7501 caaaatattt taattttaat tttctcttat attatttata ttttaatcaa tccttatttc
     7561 gccttagttt tatttatata tacctttttt atacactatt ttgccttgct aatttttgtg
     7621 cgtcgcaagc gttatatttt cgctacttgc atggctttta ttattttaaa tttatgtttt
     7681 tttaaatact ttcctagcat caaaggaaat gttgatgaga tattaaattt tttcggttta
     7741 gaatttttaa atattgattt agtattacca ataggaatta gtttttatac ctttacttct
     7801 attacttatc ttgtagaagt ttatcaaaaa cgccgtttag aaagtttttt aaatttagca
     7861 accttcttat cattttttcc aacactactt tcagggccta ttatgcgaag ttcttttttc
     7921 tttgaacagg cctatcaaaa acgcgaattt aaacatgcaa atttaatcat catcttgctt
     7981 gtttttggta tagttaaaaa agttttaata gccaattacc ttggaattta tgctaaaagt
     8041 attttagact ttccacaatc ttataatttc atacaacttt taagcgcaat ttacgcctat
     8101 gcaattcaaa tatactgcga ttttagcgga tatgttgatt tagtttgtgc ttttgcttta
     8161 atgttaggtt ttacccttcc gtctaacttt aacatgcctt atcttgcaaa aaacctaaaa
     8221 gatttttggg ctagatggca tatcagtctt tcaaccttta taagagatta tatctatata
     8281 cctttagggg gcaatagaaa aggaatgcca cgcactatag ttaacatact catcgctttt
     8341 atactttcag gtatgtggca tggcaataca cttgctttta ttgtttgggg tttattgcat
     8401 ggtattggca tagtttttat acatttgcta gctttaagca aatttagttt acaaaaaatt
     8461 ccagctttag gaagattttt aacctttcaa tttgtatgtt ttacttggat tttcttttac
     8521 tatagcaaaa atctagaaga tgcaatagaa tattttaaag cttgttatta taatttcttc
     8581 caaattccat cttataacga tatctatatg ttggttgctt ttggggttct ttttatgatc
     8641 tatcctttat ttattaattt taaagaatat tgcattaaga ttttaaatct tactccattt
     8701 ttgctaaaac cttttattat agcttttatt ttacttttgg tttttgcttt tatgccagat
     8761 ggaattcctg attttattta ttcgagtttt tagatgagtg tagttagatt tttcttcatt
     8821 ttgattatag tgcttggctt ggttgttgta gttatgaatc agagcattag ctcttatata
     8881 gaacaaaaat atcattttgc attctatcct cataatgatc ttttaaaaga agccaatggc
     8941 ttcaaaatta aattagaaca aattcgtgca attttaagca acgaaccctt gcctcaaacc
     9001 aatgaagaaa ctacaaatca agaaagtaaa tcaacagatg aaaacttaag taaaatagat
     9061 aaagttctaa acactttaga aaatgatgaa aacacttctc ataaagaaac aaatctaacc
     9121 ttaatccaag atgcaaatat tagttttatc gacaatacca aattagagct acaaaatgga
     9181 gatgagtttt tatttatcgg agattcttta atgcaaggtg ttgcaatagc cttaaataga
     9241 gatttaagaa atttaaatct taaggtaacc gatcttagta aacaaaatac aggcctttct
     9301 tataaatcct attttgactg gtcaaaagcc accaatgaag cttttattaa aaactcaaat
     9361 attaaatatc ttgttgttct tcttggcgct aatgatcctt gggatattaa aaaaggagga
     9421 aattaccatc gttttggctc cctttcttgg atagatattt acacaagtcg tgtagatgaa
     9481 atcattaaaa tcgctaaaaa acataaagcc aaagtttttt ggtttgaaat ccctcctgta
     9541 aaaaaagaag atttgaacaa aaaaatacaa gtgctcaata aaatttacag cgatgaaatt
     9601 cttaaaaata aagaaatttt tatcaacact aagctatttt ttagtgtcaa tgatgaatac
     9661 tcagcttata taaaagatga aaacaataga agtataaaag taagaacaga tgatggggtt
     9721 cattttactc caagtggcgc aagagaaatg tctaaacttt tattagaaca cataaaactt
     9781 aaggaagaaa atgctagtaa ataaatttaa aattatctta ttgtttttta ttatttttac
     9841 tagctcttat gcacaaaatt taaatacaaa tgacacaata gattccatac tcaatcaaaa
     9901 caaaaatcac tctgctttaa caagttatgt attaaaaaaa gatcttaaaa atctagaaaa
     9961 aaaattagaa aaaaatcaaa acataggaat tagaatttat ggagattctc atatggcggc
    10021 tgatttcttt ccgcgtgtca taagaggata tttaatccgc tctaactcta taggttttgc
    10081 ctatccttta cagcccaaat atcaacaaaa tcttaatctt gtttattctt ataaaaactt
    10141 tgaaatttta aactcaagaa atcctgctaa tgctggacat aattttccat taggtgggat
    10201 aatagccaaa gcaaaaatca aaggcgcaaa aatcaacctt gatacaacct tagataaaaa
    10261 aaaattcaag ataggatttt tatttaaagc caaacaaaat accaatgctt ttagcatcaa
    10321 agatgcaaaa aaccaaagct atgagttaag aactacacaa attaacaaat ggtcttataa
    10381 agaactagaa cttgatcttc ctttgcaaat ttcagcctta caaaaagatg ctgagctagg
    10441 aggatatttc atcacaaata aagataataa tgttttctta gataccattg caatcaatgg
    10501 tgccaaaagt gatttatggc tctcttggaa tcaaacagtt gtaaaaaaag aactaggact
    10561 tttacacaat gatttaatta ttcttgccta tggttctaat gatgcactct ttaaagggtt
    10621 tgaaaaacaa aaatttaaaa acaatttaaa aaaatggatt agtattttaa aaacttacaa
    10681 taaaaacgct gttatcatgc taatctctcc accaaccgta gttcaaaaac aaggtaaaaa
    10741 ctacaagctt gctcctgatt tttttaccat acgcaaagca ttatatgaag ttgctaaaga
    10801 agaaaaaact cttatctttg atatgcatca gtttatgcaa gatagtgggg gaaaaaacaa
    10861 atggatagaa caaaagcttt cgctcaatga tgtacatctt actataaaag gctatgagct
    10921 aatggctaaa aagttgctcg aggatttaaa aaatatcatt gattattaaa tttaatactt
    10981 aggaaattct aagtttttat cattaaaact taaagctgtg atttgatagt aagaattaat
    11041 ggtttttaaa agattaaatc tagctcttaa aaattcttgc tgggtagaat ttaaagtatt
    11101 gtttgcatcc aaataatctt ttaattcgct ttttcctaaa atatattttt cataatacgc
    11161 cttagtgata agctcttgtt taatgttaat attttgcaaa ttttgcaaga gcaaggtatc
    11221 gctttgataa tctttataat tcaatgcaaa ttcattcatc gcgctttgca agacttgctc
    11281 ataagaaatt aaaagttgct cataagcaaa ttgtgaaatt ttgatatttt gctttaccct
    11341 accataatct aagaaaggta aagaaatctt aacattacca cttaaaattt caaatttaaa
    11401 actatcatca atttttttat cactcccact taatgctcca cctaaagaaa tactaggcaa
    11461 aatagatttt tgcatagaag aataatcctt aaaggctgat tttaagctat tgagtttaga
    11521 tctcacatct gcacggtacg ctaaagcttt taaaggtata ttaaaatcag gacttaaggt
    11581 tttaaaatca tttaaagata aagttttaaa atactctata taagcaaaac cttcttgcct
    11641 tgccaataaa tcttgtaaat tttttatgag taaattacga ttttgatcat tgcttaataa
    11701 attttgttta gctcttaata agctttgttc tatgtttaaa agatctaatt cttctatttt
    11761 tccaagcttg tatttatagt tataaagctc tttcatttgt tctaaatttg aaagataagc
    11821 tcgaagcaat ttatctacat cgttaaaata agccagctca aacacatcat ttaaagctgt
    11881 attgatcata cttattttta aattttcaag atcataagca cttgcttttg cactaaattc
    11941 actcgcactt gcactatctc ttaatttacc ataaatatca agctcatagc ttaaatttaa
    12001 agaattattg aaatttttac tttgtttgcc tgaatttaaa tctttatccg caccaaaacc
    12061 caaatttcca cttaaagtcg gatataaatc ataatcaatc aaatcagctc tagccaaagc
    12121 cgaaagcaaa gtttttctag caatattaat atcactatta ttcaataaaa caaaatttag
    12181 aaattcattt aattttgcat tatcataaga tctataccaa tcataagtaa gatttaaatc
    12241 tttcatttgt tcttgagtta aatcaacttc tttaggcaag ctaagtttta caccacaagc
    12301 gctcaagaaa aatgctaaaa aaatgctaag tattattttc attttattcc tttgataatg
    12361 cactaatagg atttaaattt gctgcatttc ttgcagggaa aaaaccaaaa accacaccga
    12421 taaacataga acttaaaagt cccaaaagca cagaataggc atttaaaatc ataggaaaat
    12481 ccgtacttaa agtattaaaa gcaaaaataa caaaaatcga taaaatcaca cctaaaatcg
    12541 cccctatagt acaaatcata accgcttcga ttaaaaactg catcataata tcttctcttc
    12601 tagcccctat agccatgcgt atgcctattt ctcttgttct ttcacttaca gaaacaagca
    12661 tgatattcat cactcctata cccccaacaa tcaaagcaat cacagccaca caagcggtaa
    12721 gtatggttgt agtgcgttta tttgctgtaa tagcttgctt aaaagtgtca gaattaaaag
    12781 taaaaaaatc cttttgtccg cgtttaattt ctaaaattct tataatagca ttttcagcca
    12841 aagttgaact cacatcatct ttaaccttaa ctatgatttc acgcaaattt ctatctcctg
    12901 taagcttatt catcagtgtt gtatagggta tataaaaacg tactacatta tcttctatag
    12961 gcttgtctgt atctttttgc aaaactccta taatcttaaa aggttgagaa ttaaaaagca
    13021 ccacacgacc taaaatattt tcactttttt catcaggaaa aagatttttt ttagcattaa
    13081 aatccaatac agcaacattg gtactatttt ttacatcatc attatttaaa attcttcccg
    13141 catctatcct taaaccttct atagcaaaat tatttacccc tactccttca gctcttgcgc
    13201 ttaaagaaat attggtataa gttgccactc ctgaagtatt tgaatgagca tcaactgctt
    13261 ctaaatattc taaagatctt aatgtttcta aatcactaaa attaagcctt gttttacccg
    13321 aacgcaaatc cccaaatcct tttccagggc gaatttcaat agtatttgtc ccaagtcttg
    13381 caatagactc aagcacttta gcttgagagc ctaatcctaa agctacaaca caaactacag
    13441 aagcaatacc tatgatgatt ccaagcatag ttaaaataga acgaagtttg tgtgcaagta
    13501 tggaagaata agctatctta aaacattcaa aggcttgatt tttaagcaaa gtaagtgttt
    13561 ttttctcttt gggcattgtt tttaaaataa gtttttcttg agctttttcc tttttagtat
    13621 cgcttaaaat ttctccatct ttaatctcta taaccctttt agcttgtgct gcaatttttg
    13681 gatcgtgagt tactaagact atagtatgac cttgctcgtt aagtttttgt aaaatttcaa
    13741 gcaccataat accgctttta ctatccaaag ctcccgttgg ctcatcagcc aaaataagct
    13801 ctccgccatt gattaaagct cttgctatag aaacgcgttg ttgctgccct ccgcttaatt
    13861 cgtttggctt agaatctaac ttgtgagcta attctaaatc atttaagagt tttttagcat
    13921 tttgacttct ttcttgtaaa ttttttcccg cataaactgc aggtaaagaa acattttctt
    13981 tagcactcag caagcttaaa agattgtatc tttgaaatat aaagcctatt ttttcacgcc
    14041 ttaatcttgc tttttcatca ttattaagtt tagtgacttc atactcatca aaaacataag
    14101 ttccactact tggtgtatct aatgttccta tgatattcaa aagtgaagtt ttaccacttc
    14161 cactttgtcc tataatagca acaaattcac ctttttctat acttaaactt acatttttta
    14221 aaatggcatt ttcgcctata tttttgcaaa tatttttaag aaaaatcatt aaaatctcaa
    14281 cttcatttta ggagctaaac catcagcact tgagcttact atcaattctt catcttcatt
    14341 tacaccttct aaaatttgag tattgataga atctttaatg ccaagtttga catatttttt
    14401 aacagctttt tgattttcca aaatttcaac ataatagcct tttggatcgc ttttaattgc
    14461 ataagttggc actgctaaaa cagcctttgc acttgctacg acaatttcat tttgtatact
    14521 cataccaata cgcaaaaaat catctttatt ggctacataa aattttgcgt aataataaat
    14581 agcatttgat gagcttgagc ttgaagaact cgaacttgat gagcttgagc ttgtactaga
    14641 atcactcact tcagtatcag ctggatctat acttgcaatc ttagcatgat aagttttttg
    14701 aggatcatta agcaaagaaa aatcaagctc tgttcctact tttatcttac tcacatcagc
    14761 ctctgctatt tccattctta cttccatttc gtctaaatta gctatacgga ctatagtagg
    14821 agtgttttga ttagcattaa ctgtttgtcc ttcatctaca gctacattaa tcacaacacc
    14881 atccatagga gcagtaatgg ttgtataacc taaatctttt tgtgcatttt taagagtgat
    14941 ttcaagctga actacttgag cattaagctc tgcaacattg gcttttaaag tataataatt
    15001 atttttttga gtttctaaat tttcaagaga acttgcttta gctgcataaa gtttttgctc
    15061 tctttgatat tgcttattcg caatctcaag ggcaactttt ttactctcta aattagcctt
    15121 agcactttca agctgagctt ttgtaatatc taaatcgttt tgttgtttat ctttatcaat
    15181 ttgagcgatc aaatcacctt gctttacatg agttcccaca tcaacataaa gttttataat
    15241 ttgtccacta acttgagcac ccacatcgac ttgatctttg gcatatacct ttcctactgc
    15301 ctctatggtt tgagatatat cttttttttg tattttttga gttaaatagc tgattttttc
    15361 atcattatta aaaaaaataa aataagcccc aacacttcca agtattgcaa ttaaaatgat
    15421 taaaacaatc ttctttttca taataacaaa tcctaaagaa aaatcaagat taaattttac
    15481 tcattttttg tgaatttttt gtgaattttt aattctattt tataaattta aaaattctaa
    15541 agccatcatc acatcaccct gcattaaaac ttttaaattt tcatcatccc aacaaaaagt
    15601 agaactatga tgcaaagctg gatgatttaa atcctttgaa attccaacaa atacataagc
    15661 ccccattctt tctcgtgtta aaaaagcaaa atcttcagcc cccatgtcag gtttagaaga
    15721 aacaatgata ttttcttctc ctaagacctt tgcaaaagct tttcttgcta ttaaaacagc
    15781 tttttcatca ttaatcaatg gaggaaattc tttagtatat ttaagcttat aatctccgcc
    15841 attggatttt gctgtagcag cagccacttc ttctaaagaa ctttttaaaa tatcttgcgt
    15901 tttatcattt aaaaagcgca cagttccttt taaataagca tttgtaggaa taacattata
    15961 agtagttcct gcacaaattt gacctacggt aatcacccct gcttcataag gggctaaacg
    16021 tctagaaata acactttgta tattatttac aaattgcgtt gtcataatta taggatctat
    16081 acaagtgtgc ggatgagctc catgccctcc tctgccaata aattccaaat caaaaatatc
    16141 cgttccagcc atcatttcac cacttacaat ttgagcagta ttttcaagca aaggccccca
    16201 taaatgacaa ccaaaaactg catcaacata aggattttcc aatacacctg attctatcat
    16261 aggtttagct ccaccgcttc cctcttctgc gggctgaaac ataaatttaa tcgtgccaca
    16321 aaattcatct ttaagctcat ttaatatcaa agcagctccc aaaagccctg ctgtatgtcc
    16381 atcatgtcca catgcatgca tcttaccatc aatttttgaa gcatagctta gattagtttt
    16441 ttcttgcaca ggcaaagcat ccatatccgc tcttaaaaga acacattttg gttttttctg
    16501 actcttcttt tttccttcta taatagctaa aattcctgtt tttgcaatat ttttttgata
    16561 tttaatgcca aactcatcta aaattttaca cactaaatgg gctgtatttt cttcttcaaa
    16621 ttcaagctca ggatgcatat gaatttgatg tcttaaatca actactttat catagtactt
    16681 tagtgctaaa ttttcaacca gcttttgcat tcttttcctt aatctaaatc ttttattttc
    16741 tcatctgctt ttttactgtc aagtttttcc aaattcgcct ccatttttcg tatttcttct
    16801 tctccactac gcactaattt tgcatcaatt ttggaaaaat ctccagtttt tttatttgga
    16861 tattctacct tagaaagtat aaaacgcaat aaatttaatc ttgctttttt cttatcatca
    16921 gaagaaataa tagtccaagg acaagttgga gtattagatg ctaaaagcat agagtattta
    16981 gctaaagtat atttatccca taattcttgc gatttttgat ccacaggaga taatttatat
    17041 tgtttaagtg gatcgcttcg gcgtttttca aaacgttttt tttgctcgtc ttttgatact
    17101 gaaaaataaa atttaaaaaa aataatatca ctatttgaaa tcatattttc aaacaaaggc
    17161 acttctctta aaaaatcttt atgttgttgc ggtgtacaaa aacccataac cggttctact
    17221 cctgcacgat tataccaaga tctgtcaaaa atcacaatct caccggctga gggcaaatgt
    17281 gctatataac gctgaaaata ccactgtgtt ttttccacat cactaggttt ttcaagagcc
    17341 acaacgcggc aaccacgcgg atttaaatgc tcaatcaaac gtttaatcgc cccacctttt
    17401 ccagccgcat cacgcccttc tataagtata agaaccttta aacccttggc tttaacatga
    17461 ttttgaaatt tcaaaagctc aatttgcaaa ttctttaaat ctttttcata ttctattgta
    17521 cttttctttc ttttaacaga aacataaatt tcattctttt taacaaccgc ttgcgctttt
    17581 ggagaattat tttcttgcat tttcaaacct ttataaagta tttaaagtaa atttaccata
    17641 ataaattata attgaagtta aaaataaagg aaaaaataag tttttaggaa atttatgcgt
    17701 atttttggta ttattttatt aagtttttgt ttatgttttg cttctatatt atctttaaat
    17761 gaagctttta atgtaaaatc aaactcttat aataactcta tctcaattga tattgaactt
    17821 ggaaaagata tttatcttta ttctaataaa cttaaattat atataaacga aaaagatata
    17881 agttctttga ttaatctacc tcaaagttct acaagaggta atgaaaatgt ttattatcaa
    17941 aaattaaatt tagctttgcc aaatttatta ctagagcgct ttgcaaaaaa taccacaaat
    18001 ttaatcaaac tcgaatttca aggctgttct gaacaaggct tgtgttataa tcctcaaact
    18061 tggtactttg atctcatttc taaaaaagat gcttttgaaa tttcaaaacc ttacaaagct
    18121 caaaaaacag ataaaaaaac taaaattgaa tctgaagaaa gctctatagc aaatttttta
    18181 gcaacagata actttttttg gattttgcta agtttttttg gctatggact tttactctcc
    18241 ttaacacctt gtattttacc tatgattccg attttatctt ctcttatcgt agcaaaaagt
    18301 aatgctaaat tttcaaaaaa atatagtttt tttctctctt ttatctatgt ttttttcatg
    18361 tctttagcct atgctattgc tggagttata gcaagttttc taggagcaag tattcaagga
    18421 attttacaaa aacctattat tttaattctt tttgctctaa ttttcatagc ttttgctttt
    18481 gctatgtttg gagcttttcg ttttgaattg ccattaagat ttcaaacctt tatacataaa
    18541 aaaagcgaaa aagggaaggg agttgtaggt atagccatca tgggattttt atctgcttta
    18601 atagtaggtc cttgcgtagc agctccttta gcaggtgctt taatttatat agccaataca
    18661 ggcaatgctt tattaggtgg tagtgcactt tttatcatga gttttggcat gggtatacct
    18721 ttgcttttca taggcttagg attaggtttt attaaacctg gtttttggat ggaaaaagta
    18781 aaaattttct ttggttttgt tatgttggct atggctattt ggatactttc tagaattatt
    18841 gaagaaaatt acattttaat tgcctatgga attttaggtg tattttttag
//
LOCUS       DARBAR010000022        18346 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.022, whole genome shotgun sequence.
ACCESSION   DARBAR010000022 DARBAR010000000
VERSION     DARBAR010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18346
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.022"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..159)
                     /locus_tag="SB815_000555"
     CDS             complement(<1..159)
                     /locus_tag="SB815_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0906321.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGD"
     gene            complement(161..847)
                     /locus_tag="SB815_000556"
     CDS             complement(161..847)
                     /locus_tag="SB815_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0906322.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFEFKLKRFIKLIVDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            926..1735
                     /locus_tag="SB815_000557"
     CDS             926..1735
                     /locus_tag="SB815_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG0906323.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            1877..2644
                     /locus_tag="SB815_000558"
     CDS             1877..2644
                     /locus_tag="SB815_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HEG0906324.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            2654..3394
                     /gene="pxpB"
                     /locus_tag="SB815_000559"
     CDS             2654..3394
                     /gene="pxpB"
                     /locus_tag="SB815_000559"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HEG0906325.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            3375..4340
                     /locus_tag="SB815_000560"
     CDS             3375..4340
                     /locus_tag="SB815_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HEG0906326.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(4337..5233)
                     /locus_tag="SB815_000561"
     CDS             complement(4337..5233)
                     /locus_tag="SB815_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG0906327.1"
                     /translation="MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWILFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(5266..5844)
                     /locus_tag="SB815_000562"
     CDS             complement(5266..5844)
                     /locus_tag="SB815_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG0906328.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            5944..6291
                     /locus_tag="SB815_000563"
     CDS             5944..6291
                     /locus_tag="SB815_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG0906329.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMSK
                     WGKKDKKGKKCLN"
     gene            6279..6728
                     /locus_tag="SB815_000564"
     CDS             6279..6728
                     /locus_tag="SB815_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HEG0906330.1"
                     /translation="MLELIGELSLQNYMGEWLEIARKPAFFQKSCLNSKAKYELKYKN
                     GIPYVEIENFCSKKNEISSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFVDSEYK
                     VAIVGSPDKKYLWILARNIIDEKNIKELLNIAKQRGFDISDVVFDKY"
     gene            complement(6730..7806)
                     /locus_tag="SB815_000565"
     CDS             complement(6730..7806)
                     /locus_tag="SB815_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEG0906331.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSNIKEGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSCDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHGIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            complement(8034..11129)
                     /locus_tag="SB815_000566"
     CDS             complement(8034..11129)
                     /locus_tag="SB815_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEG0906332.1"
                     /translation="MSKAKTSEFDLEQFVISSLLEHGWCYEKPVRATDEVLLETSLVN
                     ALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADI
                     INLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATIN
                     SAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNK
                     SLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNK
                     AISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITDRNDLD
                     DQLFGTFASCANLLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPENDNVFECLS
                     LRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGF
                     TGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGKRLVNE
                     LDEKLENQDSQKAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRS
                     VAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMR
                     NIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVV
                     DYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEKYFELD
                     TGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAI
                     KARFLKFAKENENENLLNQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLL
                     EVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEA
                     LDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQ
                     IIKNNVSIDWMIKENVRARLRVAVKRVLNKYGYPPDMQQLAIDGVLAQAEILAKELAN
                     E"
     gene            complement(11132..12898)
                     /locus_tag="SB815_000567"
     CDS             complement(11132..12898)
                     /locus_tag="SB815_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0906333.1"
                     /translation="MNKYKFVKFQVKNFRSLLDITLNIDNNNINTICGENNIGKTNFL
                     RALNLFFNHNNGVEYNQNEDRPYHIQKGSTGGRKTELIGYFTKNNVTHILKVEFHKDK
                     IVYILNGKMVEWKVARDIVESFKLLFIEASNVNMPSVISAILENDALLALDNKRKKQS
                     EPLRTLKLFIEQSKKAIEDIEKDINIYLKQMLDFDNTLKDKEIKIRFAEFEKLRDVVK
                     TMTSVTLDDGNDHLMDHKGSGAQRIVLLSLMQYITDKITTDIIWAIDEPEAFLQPKLQ
                     KKIMEIFKNIVREKKQPIIMTTHSQYFVDFNNLVNTHLFKLTKEEKIYARKKGRVFQE
                     INTKPIYIGTAFEKLSVIKKHLGIETNDNWDIMPYNILVEGEEDKKYLQMLIEILNLS
                     MPNIIHSGGATKIAGFLEYFNNQCSYTSFKPYFICIFDNDEEGRKQYNKISKDNLYPN
                     IKLDAKKLKRYGESIQENNRDIWEIEDFMPIKIIVDAVNIILKYKQYNTITNSQISDR
                     KKLAFKNMSILDYLEKCIADRNEEKERFILNTESRKKEICQNAFRAREKYTKNDLEDY
                     HVDFMNELIDSFNKVDLIKKDN"
     gene            complement(12909..14051)
                     /locus_tag="SB815_000568"
     CDS             complement(12909..14051)
                     /locus_tag="SB815_000568"
                     /inference="COORDINATES: protein motif:HMM:NF013579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG0906334.1"
                     /translation="MNNWKKCKLGDIAEITMGQSPKSEFYNFDNIGMPFLQGNRTFGR
                     KYPYFDTYCTEYKKIAKKGEILFSVRAPVGDINFANNDICIGRGLCSMNAKNGENEFL
                     YYLLHNLRSVIINNESGSVFGSVNKNDLQTIEILLPLLEEQRQIATILSSIDDKIELL
                     HEQNKTLEELAQTLFLNWFKDREFNSTISDFISMQNGFAFKSKDFIDYGNNGVIKIKN
                     ISNGIVDIVNTDKISQNTINEVNNKFNINSGDILFAMTGAEIGKMGIVPSTNKKLWLN
                     QRVGMVKERFLGARFLAYIHLTSEFGYDYVINSATGSAQENISATDIENCPFVKLTSE
                     EIVSYSKQLNDFFEKIIFNLGEIQTLENMRDILIPKLLNGEIKITN"
     gene            complement(14270..15736)
                     /locus_tag="SB815_000569"
     CDS             complement(14270..15736)
                     /locus_tag="SB815_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA binding domain-containing protein"
                     /protein_id="HEG0906335.1"
                     /translation="MIRTVMDFKFVLRLLEANQFENEVVEYKKNNKDFIVLGKNISAL
                     SNTAALLGIDKAYIIFGIEDGTLNIVGTNFKPKQEKKGNEELESWLHKVLKPNIEFKI
                     HEITEKEIRLVVFEIEATKISPIKFEEKAYIRIGSNRKELDKYPEKEKKLWQVLSGFS
                     FENEIAKSNLNIQDIYDLLDYSKCFDMLDISYDNYSSDEYIIEKLIEHGLVKNLNDSF
                     AITNLGAILFAKDLTKFKGLNRKRIRFIRYQGKNKIHTLEELEGRKGYAIGFQGLISY
                     IMQYVPKNEVIENAIRKDTTLYPEIAIRELVANAIIHQDFTINGRNPMIEMYSDRIEI
                     TNNGKSLIDIKRLIDMPSKSRNDKLANLMRIMGICEERGSGVDKVIDSVEAYQLPAPD
                     FINNEDYFQAILFSHMPLEDMTKQDRIRATYQHCCLKWASREAMTNASLRARFKIGDK
                     QHSKASKIISDTLEAGLIKQQDPENKSTKHVKYVPFFV"
     gene            complement(15733..17235)
                     /locus_tag="SB815_000570"
     CDS             complement(15733..17235)
                     /locus_tag="SB815_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
                     /protein_id="HEG0906336.1"
                     /translation="MAKKKEIKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISD
                     SFMQKYEELLKEQDDGADPEDADEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEA
                     MDEIEKHNDTLKGVLPKVYAKDNLDSKCLGELIDLIGNIAFDTGKSTDVLGHVFEYFL
                     GEFALAEGKQGGQFYTPKCVVELLVTMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQG
                     RLDDISIYGQESNQTTYKLAKMNLAIRKIESSQVIWNNEGSFLNDAHKDLKADFIIAN
                     PPFNDSDWSGELLENDGRWKYGVPPASNANYAWIQHFLYHLSPNGGVAGFVLAKGALT
                     SNTTNEAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLFID
                     ARDLGTRINRRNKTLNKDDINQIANIYKAWKNGTDYEDIKGFCKSVSIDEIRELSYVL
                     TPGRYVGLADSDDEFDFDTRFNELLAKLKSQIKTEQELSEIILKNLEKIK"
     gene            17290..17593
                     /locus_tag="SB815_000571"
                     /pseudo
     CDS             17290..17593
                     /locus_tag="SB815_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809523.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
     gene            complement(17605..18240)
                     /locus_tag="SB815_000572"
     CDS             complement(17605..18240)
                     /locus_tag="SB815_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEG0906337.1"
                     /translation="MKIAILCASGKVGKEISKEALKRNLEPVCFVRNSSKMNEFLPQA
                     KIVQRDLFELDSKDLIDFDIIIDAFGEWENLSLHKKHIECLSVILQGSKAKLFVVGGA
                     GSLYMDENHTTRLMDMPDFPKEYLDIAKASAEVLEFLRNEKGFKWVYVSPSAIFSPDL
                     PKSNHYKIIGEKFEVNANNESKISYSDYASAMIDIVLNSCYENTRIGVISL"
BASE COUNT         6048 a         3134 c         2584 g         6580 t
ORIGIN      
        1 atctccttct aaaaatttta atattcttaa aaatgtagat tttccacttc cattcgctcc
       61 cattaagatg ctaattttac ttgtatcaag ttttaaattt ttgattttta aaacttcttt
      121 gttttgatag ttgaaaaaaa gattagaaat ttctatcatt ttatgttctt ttgagtttgt
      181 gcgtgatgaa atttaaacaa aaggcaatga gaattaaaac caaagccaaa gctataccgc
      241 tagcaaattc gcctttgttt gtttcaagag aaatagctgt ggttatggtt ctagtatcgt
      301 atttgatatt tccacctact atcatcgcta ctcctacttc tgctacaatg cgtccataag
      361 ctagtgcaac gacgctaatc aaagcaaagc gtaattcata aatcatcgtt aaaacaagtt
      421 ttaaaggact taggtgaaaa gattttataa gtaaaaaatg ttttttattc atattttcta
      481 tcaaatttga aaaaagtgcg atcactatag gaagcgctaa gataaactgc cctaaaatta
      541 aagcctttat agtaaaaagc aatccaaatt ctcccaaagg tcctcgactt gaaatcagtg
      601 cataaagtat aagtcctact gcaactgttg gaaaagaaag gctagtatca actataagtt
      661 ttataaaacg cttcaattta aattcaaaaa aacctaagat aaatcccaaa ggaaaaccta
      721 taagcaaagc taaaactata gaaatacttg agcttaaaag tgtagttttt atagctgaaa
      781 ttacgctttc atcagcattg aaaagtaaaa ataaagcctg tttaaaacca tcaaaaatat
      841 aatccaaaaa tatccttttt aaaataagta attttagcat aattatgcta aaatattttt
      901 ttatataaat ttataaggaa aaaaaatgaa aaaaatcatt tctttagccc ttgctttagc
      961 tttaagtgca agtgcagcag aacttaaaat ggcaactaca acaagcactg acaatacagg
     1021 acttttagat gctctaaaac ctctttatga aaaagaaagt ggcaatacct taaaatgggt
     1081 tgccgtagga acaggtgcgg ctttaaaaat gggtgaagat tgcaatgctg atgtgctttt
     1141 tgtgcattct ccaaaggctg aaaaagaatt tatgaaaaaa ggctttggtg tagatagaac
     1201 tcctgtgatg tataatgatt ttatcatcat cgcagataaa tctttagctt ctaaatttaa
     1261 aggtaaaaat ttaaaagaaa gcttagaact tatcaaaaat gaaaagctta ctttcatctc
     1321 aagaggcgat aaatcaggca ctgacaataa agaaaaaagc ctttggaaaa atcttggcgg
     1381 tgttcctgaa aagcaaagct ggtatcaaca aagcggacaa ggtatgttag caagcattaa
     1441 aatcgctgaa gaaaaaaaag gtgtgatttt aaccgatcgt ggtacttata tcaaatatga
     1501 agccaatgaa aaaggcaaac caaacttagt cattgtaaat gaaggcgatg atagtcttaa
     1561 aaatttttat tctgttatag cgacaaatcc taagcattgt aaaaatgtaa attatacaga
     1621 agctagtaaa tttatcaaat gggtaacaag tgataagact ttaaatttca ttgctgattt
     1681 taaacttctt aataaacctt tatttgtaat tgatgcaaaa acaagaaaag actaaaaatt
     1741 aagcaggttt taacctgctt aaaatatcat tttttactta ttgtaacttt tttatttatt
     1801 tttcaaaact tttagcttat ttaaaattct tctttagata taataaaatc aataattaaa
     1861 tatacaaggt caaataatgt tcaaagtgga tttaaatagt gatttagggg aaagttttgg
     1921 cgcctataaa atgggaatgg atgaagaaat tttaaaattt gtaagttcag taaatgtcgc
     1981 ttgtggcttt catgcgggtg atccttgtgt gatggatgaa accttaaatt tagccaagca
     2041 aaatggtgtt tgcataggag cacatccatc ttatcctgat cttttgggtt ttggaagacg
     2101 caatatgcaa ataagctttg aagaggctaa aaactatgcc ttgtatcaac taggagcttt
     2161 atttggcttt gctaaggcaa aaggtatgaa aatacagcat tttaaagccc atggggcgct
     2221 ttataatatg gcagctattg atgaaaattt agccttagca ctttgtgagg cagtggcgag
     2281 ttttgatgaa aatattattt ttctagggct tagtaattct gctatgaatg aagcagctaa
     2341 gaaaaagggt ttaagatatg ctaatgaagt ttttgcagat cgtgcctata atgatgatgg
     2401 cactttagtt tcaagaaaat tagaaggggc gttaatacac gatgaaaatt tagctatcaa
     2461 acgcgtgata aaaatgataa aagaaagcaa agttacaagc ataaatggca aagaaattga
     2521 tttaaaagcc gatagtattt gtgttcatgg ggataatgca aaagctttag aatttgttaa
     2581 aaaaatcaaa gaaaatttaa aaaaagagca aattcaaatt tgtgctttgg aaaattttat
     2641 ataagtttta gcaatgttta gtgtgcattt tagtggaagt aaagctttgc ttttgcgttt
     2701 tgagcaagaa atttcacctc aaatcaatgc ctatgtttta agcacagaac aaaggataca
     2761 aaaagcccta aaagaaggtg aaatttatgg gattgatgag ttggtaagtg cttatgcaag
     2821 cttgcttata tattttaatc cttgcgtgct ttctttaaat tccttgcttg attttttgga
     2881 aaaaattaaa aaggatatta aacttgcaga acaaaactca agtctttgta tagaagttcc
     2941 actttgttat gatgaagaat ttgggctgga tttagaattt gtgtgcaaac acaatcaaat
     3001 ttcaaaagaa gagcttatat ctcttcacac taaaccttat tatcttgttt ttatgctagg
     3061 ttttatggca ggttttcctt atcttggagg tttagatgaa agacttttta ccccacgcct
     3121 ttcaagccct agagcaaaaa tagaagctgg aagtgtaggt atagccgata aacaaacagg
     3181 agtttatccc atatcaagtc cagggggttg gcaaatcatt gctagaacac ctttggaatt
     3241 ttttgataaa gaagatgaaa aaaatcccac tcttttaaaa gcgggtatgt ttttaaaatt
     3301 taaagccatt tcaaaagatg aatttttcga tatccaagag caagttgcta aaaaagtcta
     3361 tcaaaaggaa atttatgagt ataaaaatca ttgaagcatc tataaattca agtttgcaag
     3421 actttggtag aaaaaaattt gctaaatttg gcatagcaag aagtggagct atggatgaag
     3481 atgctttaag aatggcaaat atcttgcttg gaaacaaaca agatgaagca ggaattgagc
     3541 tttgtttaaa gggtggaaaa tacgaatttt tagatgagaa ttattttgtt ttaagtggag
     3601 ctgaatttga ggcaaagctt gataatcaaa aaatcaaaac ttgcaaagta tatcaagcaa
     3661 ataaaggcga tattttagaa cttgatttag caaaaatagg ttttcgtggg tatttatgcg
     3721 tagcgggtgg ctttgaagta aaaagttttt taaactctaa atccagtgat gctaaaatgg
     3781 gagctggagt ttttgaagga agagctttgc aaaaagatga tattttaaat actcataata
     3841 cttttatacc ttttaattta gaagctagag aatgtgaaaa tcctcttttt aaaagcccta
     3901 aagagcctat tatacgcgtt attttaggaa caaatgaaga tgcttttacc caaaaaggca
     3961 tagaaacctt tttaaatact acttataaag taggtttaaa aagcgataga atggcaattt
     4021 atgcagaatc tagtgaaagt atagagcata aaaactcagc agatatcatc tcagatcctg
     4081 cggtttttgg aagtatacaa gtgccaaaaa gtggtattcc tatcatttta atggcaggaa
     4141 gacaaagcac aggaggctat acaaaaatag ccacggttat agaaaatgat ctaagcttac
     4201 tcgcacaagc taagttaggt tctagcttta aatttcaaag cattagcatg caagaagcct
     4261 tagaacttta taaacaaaga gaaatgaaat ttaaagctat ggatcaaaaa atcaatcttg
     4321 attttgaaaa tttaatctaa gcttttttgc cataaatatt gataaaatat atagcaccta
     4381 tagccaaggc acaacctaac aaggtaagtg catttggcac ctcatctagt ataaaataac
     4441 tacaaattaa agcactagca ggagtgatta aaacaaaaga atttgcctta acgcttccta
     4501 aaatgtgaat cccataataa taaatactag ttcctataat agttgataaa aaagccacga
     4561 caaacatact gatccaaaat ttaaattcaa aatgaaaaat ttcataactt tttacatcaa
     4621 acaatatcca agaaaacatt aaaatagaaa tgagattaat ataaaagtta atcgccaaag
     4681 ggtgagctcc tttggcttta tgattaaaca ctgccatcaa agcccaaata aaagaacaag
     4741 ttaaaaataa aatattaaat ttaccaaata aatcttctaa actccctaaa tttagcaaac
     4801 aaaatccaga taataaacct aaaaataagc ctagaatttc actctttgtg atcttgtgag
     4861 ttgatttttt gtttttttga aaaaatatcg ctatcataaa tatcaaataa gaaaaaatag
     4921 gaatcatagt ggttactaaa actcctcctt tgcctgccaa gccgtgcttt atagcaataa
     4981 aaaatacaaa ggcataaagc ccatttaaaa ctcctgctat caatacccat tttaaggcag
     5041 ttttttcgat tttaagagga atttttaaga agtttaaaac aaaaaatgaa cccaatacaa
     5101 caaagaaaaa acgccaaaag gtaataatag aagtatccgt ataatttgct aaaatcttag
     5161 atgttggcca agatgagccc cataaaaaca tagcaataac aagcaagata tacaaatact
     5221 ttgttcgagt caatgttaca ccttgaaatt tttaagtcaa attttttaaa aaattttttt
     5281 caagtgtagt tcatactcgt ttagatattt ttccacttga ggatttttta ccacatcatt
     5341 acacataaaa gttggtaaag ctttcatacc tataaattca tgagccttat gcaaatgcca
     5401 atacaccata tctacaccct ttccttcaaa aaattcattt ttatcattaa aggcttcaag
     5461 aggtgcattc caagtgagag aaaacatgta ttttttacca tgatctaaac caccttttcc
     5521 gtagttttta ctaggatttt catgagttct tccatcattt ttaaaaagca ctccagcacc
     5581 caaaccaaac acttcatcga tatatttttt aactatccaa ggctccccca tccaccaagc
     5641 tggcatttga tagatcacag catcagcttt tataaatttt tgtatctctt ctttaggatc
     5701 atatccttga tctatgtgag tttgatctac ctcgtatcct agtgttttta aaatttctaa
     5761 agcatgatta tgcaatgtca aattaagttg tccttttgaa tttccaaatt ctttagcacc
     5821 attaagcaag agtatatttt tcatttttat ccttttttaa attttatgat acaattataa
     5881 cttagcataa tatcattttc aatacagaaa ataaagtaat atactatact aaaggaatgt
     5941 taaatgacta aagagaattc tccgtgcaat ttcgaagaat gtggatttaa ctatactcta
     6001 gcattaatta atggaaaata taaaatgagt attttatact gcttatttcg ctatgaaatc
     6061 gtgcgttata atgaactcaa acgcttttta agctccatat cttttaaaac tttaaccaat
     6121 accttaagag aactagaaaa cgatggttta attatcagaa aagaatacgc tcaaattcca
     6181 cccaaggtag aatatagctt atccaaacgt ggacaaagtt taattcccat tttacaagct
     6241 atgagcaaat ggggcaagaa agacaaaaaa gggaaaaaat gcttgaatta attggcgaac
     6301 tttctttgca aaattatatg ggagaatggc ttgaaatagc tagaaaaccg gccttttttc
     6361 aaaaatcttg cctaaattca aaggcaaaat acgagcttaa atacaaaaat ggcattcctt
     6421 atgtagaaat tgagaatttt tgcagtaaaa aaaatgaaat ttcaagtata aagggtaagg
     6481 caaaaatcgt ttcaaatagg caattagcag tgagatttaa catctttatg aaccttttta
     6541 ataaagtaaa ttatgaaatc atttttgttg atagcgagta taaagttgcc attgtgggta
     6601 gtcctgataa aaaatatctt tggattttag caagaaatat aatagatgaa aaaaatataa
     6661 aagagctttt aaacatcgct aagcaaaggg gatttgacat tagcgatgtg gtttttgata
     6721 agtattaaat tattcttttg tcatatcaat gacatagcga aatttagcct ttcctgaggt
     6781 tagattttca taagctttat cgatttcttg tggggtaata agctcggttt ctggataaat
     6841 tccgtgtttt aaagaaaaat caagcatttc ttgagtttca gcaataccac caattaacga
     6901 gccataaacc tttttacctg ccttatgtac aaaggttatc acgctgatac ttggagcaac
     6961 ttcgtgaggt ggcaaaccca ctatcgccat ttcaccgcca aatttaagca aatccaaata
     7021 aatagcagga ttataaggcg ttggaatggt tgagatgatt aaatcaaaac gttcttttac
     7081 agcgttttta tcgcagcttg tgtaaaatga gcttacaccc atagccaaag catcggcttt
     7141 tttgttttca tttctagcaa aaacgctaac ctttgcaccc attttcacag catatttaac
     7201 cgccatcata ccaagtccgc caaatcccgc tactgctacg cttgagcctt ctttgatatt
     7261 tgaaaattta agcggagaat aagtggtaat tcctgcacaa agcaaaggcg cgactttttc
     7321 catcggtgca tcttttggca cacaaacggc aaatttttca cttacaacta tgttgtttga
     7381 gtagccccca taagtgtttt cattgccatg aaatacatca caactattgt aagtaaagat
     7441 ggttttgcca ttttcgcaaa actgctcttg tgagcgtttg caagcatcgc actcaccgca
     7501 tgaatttacc atacaaccaa cccctgcgta atctcctact ttaaatttac tcacattttt
     7561 acccacagcg ataacttctc ctgctatctc atgcccaggc acgcaaggat aagtagcttc
     7621 tccccactcg cttcttgcgg tgtgaatatc gctatgacaa atgcctgcat ataggatttt
     7681 aatcaaaata tcattatcgc caatagcatg gcggctaaat tcaaagggtg taaatttcgc
     7741 atccttgcta agcattgcat agcctttact tgcgatgcga ttgttttcta aaattttgta
     7801 ttgcattttt gctccttttt tgatttttta taattataaa acattagagt agctataagt
     7861 caagagtgaa aataattttt taaaaattag tataaatact ggatactagt gaaattgtat
     7921 aaaattaagc aaattttata acaaagacat agttgcaacg acaaatcaag ctatctataa
     7981 taaagataaa agaaaataat acaaacaaat ttaatttcag tatcgcttaa attctactcg
     8041 ttagctaatt ccttagccaa aatttcagct tgagctaaaa ctccatcaat tgcaagttgt
     8101 tgcatatcag gtggataacc atacttattt aacactcttt ttacagctac tcttaatctt
     8161 gctcttacat tttcttttat catccagtct atacttacat tgtttttgat aatttgcagt
     8221 atttcactaa cgagtgctaa tagtttttca ttgcctaaaa tcttttcata ctcatcatta
     8281 caagcaagtg ctgagtaaaa ggcgtattca tagtctttta aacctaactt cttagcctca
     8341 tcttccatac ttactatgct tttactcata tttattagct catctagtgc ctcgcttgat
     8401 gagattagct tattgttata ttttttgata gcatcactaa gcatttgtgc taatttttta
     8461 gcctttgtta ggcttagctt ttctcttgct tttatctcat catttagtat cttttttagc
     8521 atttcaaagg ctaaattttt acgcttcata ttctttactt ctagtaaaaa ctcatcagaa
     8581 agtatagata tatcaggctt ttttatacca ctagcatcaa aaatatccac cactttagat
     8641 gatacaatag ctttatctac tacttgcttt atcaaagctt gattaagcaa attttcattc
     8701 tcattttctt tagcaaactt taaaaaccta gcctttatcg catacataaa agcgatttta
     8761 ttctttatgc tcaaagcttt ttcgtgtggc atagctatcg tgtaggcttt atcaagtgct
     8821 gcaaattctt ttataaatct gttcttacca tcttcatttg ataatatatg ctcttctaca
     8881 tcaagtatat attcaagttt agcccccgta tcaagttcaa agtatttttc atagtcattt
     8941 ggcagcattt gttctacgat ttcaagcttt tctatcatca cttttacagc gtcttcttga
     9001 gtagtgatta tatcgccctt gccaccactt tcactataaa atgataaagc ttttttcaaa
     9061 tcacttgcaa tcccaagata atccaccaca agcccactag gtttatcctt ataaacccta
     9121 tttactctag ctatagcttg cattagatta tgccctttca taggcttatc tatataaaga
     9181 gtatgaagcg atggcacatc aaagccagtt agccacatat ccaccactat aactagtttt
     9241 aattcatcgt ctatatttct catacgattt gccaaaaact gcttttgaat cttacttgta
     9301 tgatgtttac taaactctac cccatcgcta gagcttgaag tcatcactac ttttatagcc
     9361 ccgctactta gctcatcgct atgccaactt ggtcttattt ttatgatttc atcatatagt
     9421 tttatagcta cgcttcggct tatacttact atcatacctt ttccgccgag cttactagac
     9481 cttgtttcaa agtgttttac tatatcttta gcgatttgtt ttagtctgct tgtgctacct
     9541 actaaagctt ctagcttagt agcttttgct ttttggctat cttggttttc aagcttttca
     9601 tctaattcat ttacaagcct ttttccttct tcgcttagct ctattttggc aagtctgctt
     9661 tcataatata tactcacagt agcaccatct tcaacagctc ttgatatatc atatatatct
     9721 atgtagtttc caaaaactgc aggggtgttt atatcatggc tttcaattgg cgttcctgta
     9781 aatcctatat aagtagcatt tggcaaagca tcacgcagat attttgcgaa accataaact
     9841 atcttttgcc ctagcacatc gccacttttt gacttttctt ctactacttt tgcatcaaag
     9901 ccgtattggg ttctgtgtgc ttcatctgca attacgatga tattatctct aagcgataag
     9961 cactcaaata cattatcatt ttctggacta aatttttgaa tagtagtaaa taccactcca
    10021 ccactagcta cccttaaaag ctcttttaaa tgctctttat cgtttgcttg ttttggctct
    10081 tgtcttaaaa ggttcgcaca acttgcaaaa gtaccaaaaa gctgatcatc tagatcattt
    10141 ctatccgtga taagcaaaat cgtaggatta tttaaagcct ttatcgcttt agcactataa
    10201 aacaccatag acaaagactt cccactacct tgcgtatgcc acaccacgcc acctttttta
    10261 tctccgtctt tgctacttgc tgtgattgtt ctactaatgg ctttatttac tgcgtagtat
    10321 tgatgatagc aagcgatttt tttggtagtt tttatactta aaataccatt taaatctctt
    10381 atttgctctt tttcaaaaac tatgaaattg caaatgatat ctagcaaggt ttttggattt
    10441 agcataccat ctattaaggt tttaatttct aaagacttgt ttggagcgta gtttatccca
    10501 tcgctacttt tccacgccat aaaccttgaa aaatcagccg aaatactccc cgccctagca
    10561 aaatacccat cgcttatcac acaaaaagca ttatatgtaa aaatacttgg gattgtttgt
    10621 ttataagtgt ttatttgatt ataagctgag tttatcgtgg cgttttcatc gcttgggctt
    10681 tttagctcca ttaaaacaag cggaattcca tttatatata gcactacatc ggggattttg
    10741 ttttctttag cttctgtgat gcttagctgg tttgttgcta taaattcatt gttgcttgca
    10801 ttattaaaat caattagatt tatgatatca gctctgcttt cgccgtcttt tgtagtgttt
    10861 atatttaccc catttacaag cttataatga aagttttcat tgctatctaa aaggctaaga
    10921 tgatttttgc tttttagctc cttataaatt tcattagctt ttgataaatc aagctgtgga
    10981 tttagcctac aaagtgcatt tacaaggcta gtttctagca aaacttcatc agtggctctt
    11041 acaggctttt catagcacca cccatgctca agtagtgatg atataacaaa ctgctctaaa
    11101 tcaaactcac tagtcttcgc cttgctcatt tttagttatc cttttttatc aaatctactt
    11161 tgttaaagct atcaataagt tcattcataa aatcaacatg ataatcttct aaatcatttt
    11221 ttgtatattt ttcacgagcc ctaaatgcgt tttggcaaat ttcttttttt cttgattcag
    11281 tgtttaatat aaatctttct ttctcttcat ttctatcagc aatacatttt tctaaataat
    11341 ccaaaattga catattttta aatgctagtt tttttctatc acttatctga gagtttgtta
    11401 tcgtattgta ttgtttatac ttaagtataa tattaactgc atctactatt atttttatag
    11461 gcatgaaatc ttcaatctcc caaatatctc tattattttc ttgtatcgat tctccatatc
    11521 tttttaattt ttttgcatct agctttatgt ttggatataa attatctttt gatattttat
    11581 tgtattgttt tctaccttct tcatcgttat caaaaataca tataaaatat ggtttaaaag
    11641 aagtataact gcactgatta ttaaaatatt ctaaaaaacc tgctatttta gttgcaccac
    11701 cagaatgtat tatatttggc atagataaat ttaaaatttc tattagcatt tgcaaatatt
    11761 tcttatcttc ttctccttca actaaaatat tataaggcat aatatcccaa ttatcattgg
    11821 tttctatacc taaatgtttt ttaataacag ataacttttc aaacgcagtg cctatataaa
    11881 tcggttttgt gttaatttct tgaaatactc tacctttttt tctagcataa atcttttctt
    11941 cttttgtcaa tttaaacaaa tgagtattga ctaaattatt aaaatctaca aagtattgag
    12001 aatgtgttgt cataattata ggctgctttt tctctcttac aatattttta aatatttcca
    12061 taatcttttt ttgtaatttt ggctgcaaaa atgcttctgg ttcatcaatt gcccatatta
    12121 tatctgttgt aattttatct gtaatatatt gcattaaaga taaaagtact attctttgag
    12181 caccactccc tttatgatcc attaagtggt catttccatc gtctaaagta acagatgtca
    12241 tagtttttac aacatctctt aatttttcaa attcggcaaa tctaattttt atttccttgt
    12301 cttttaaggt gttatcaaaa tctaacattt gttttaaata tatattaata tccttttcta
    12361 tatcttctat agctttcttt gattgttcta tgaataattt caatgttctt aaaggctcac
    12421 tttgcttttt tcgtttatta tctaaggcta acaaagcatc gttttctaaa atagcagaaa
    12481 ttacgctagg catattcaca ttacttgctt ctataaataa aagtttaaaa ctttctacaa
    12541 tatctctagc aactttccat tcaaccatct ttccatttaa tatatacaca atcttatctt
    12601 tatgaaattc aacttttaaa atatgtgtga cattattttt tgtaaaatag cctattaatt
    12661 ctgtttttct accaccagtt gatccctttt gaatatgata tggtctatct tcattttgat
    12721 tatactccac accattatta tgattaaaaa ataaatttaa ggctctcaaa aaattagtct
    12781 ttccaatatt attttcaccg caaattgtat ttatattatt attgtctata tttaaagtaa
    12841 tatccaataa agaacgaaag tttttaacct gaaattttac aaacttatat ttattcacac
    12901 attctccttt agttagttat ttttatttct ccatttagga gttttgggat aagtatatca
    12961 cgcatatttt ctagggtttg aatttctcct agattaaata taattttttc aaaaaaatca
    13021 tttaattgtt tagaataact cacaatctct tcactcgtaa gcttaacaaa tggacaattt
    13081 tcaatatctg tcgcacttat attttcttga gcactgccag tagctgaatt gataacatag
    13141 tcataaccaa attcagaagt taaatgtata tatgctaaaa acctagctcc taaaaacctt
    13201 tcttttacca ttcctactcg ctgatttaac cataattttt tatttgtact tggaacgata
    13261 cccattttac ctatctcagc accagtcatt gcaaataaaa tatctccaga atttatatta
    13321 aatttgttat taacttcatt tatagtattt tggcttatct tatcagtatt tacaatatct
    13381 acaattccat ttgaaatatt ttttatcttt attactccat tgttaccata atctataaaa
    13441 tctttactct taaaagcaaa accattttgc atagatataa aatcactaat agtgctatta
    13501 aattctctat ctttaaacca atttaaaaaa agagtttggg cgagttcttc tagggttttg
    13561 ttttgctcgt gtagtagttc tatcttgtca tcaatactac ttaagatagt agcaatttgc
    13621 ctttgctctt ctaatagcgg taataaaatt tctattgttt gtaaatcatt tttatttacc
    13681 gagccaaaaa cactaccaga ctcattattt ataataacac ttcttaagtt gtgtaataag
    13741 taatataaaa attcattttc accatttttt gcattcatgg agcataagcc cctaccgata
    13801 caaatatcat tgtttgcgaa attaatatct ccgacaggag ctctcacact aaataaaatc
    13861 tcaccctttt tagctatttt tttatattca gtgcaatatg tatcaaaata aggatatttc
    13921 ctaccaaaag tcctattgcc ttgtaaaaat ggcataccta tattatcaaa attataaaat
    13981 tctgattttg gagattgccc cattgttatc tctgcaatat ccccaagctt acattttttc
    14041 caattattca tatcttaatc ccttggaatt tatttgcgta aaaaatccaa aaaatacacg
    14101 aaataaattc gagaatttaa attcggaatt tcctttgttt aagcttggtt taaaagataa
    14161 tgacgaaagc atgacagaag aaaaaacgct aaaagctcgt attttaaagc tatgtgatat
    14221 ataatttaag ctatttttaa ataattttga cgaaagcatg acataaaacc taaacaaaaa
    14281 atggaacata tttaacatgt tttgtagatt tattttctgg atcttgctgc ttaatcaaac
    14341 ctgcctctaa agtatcgcta attatttttg aagcttttga atgttgctta tcacctattt
    14401 taaatctagc tcttaagcta gcatttgtca tggcttctct tgaagcccat tttaaacaac
    14461 aatgttgata tgtagctctt attctatctt gtttggtcat atcttctaag ggcatatgag
    14521 aaaataaaat tgcctgaaaa taatcttcat tatttataaa atctggtgct ggcaattgat
    14581 aagcttcaac gctatctata accttatcca caccagaacc cctttcttca catataccca
    14641 ttattctcat taaattagcc aacttatcat tccgtgactt tgatggcatg tctattaatc
    14701 gtttaatatc tataagagat tttccattgt ttgttatttc tattctatcg ctatacattt
    14761 caatcattgg atttctacca tttattgtaa aatcttgatg aattatcgca ttagctacaa
    14821 gttcccttat tgcgatttct ggatataaag tagtatcttt tcttatcgca ttctctatca
    14881 cttcattttt aggaacatac tgcattatat atgaaatcaa tccttgaaaa ccaatagcat
    14941 atccttttct accttctaat tcttctaatg tatgaatttt gtttttacct tgatacctta
    15001 taaatctaat tctttttcta tttaagcctt taaattttgt taaatctttt gcaaacaaga
    15061 tagcacctaa attagtaata gcaaaagaat cattcaaatt tttaactaaa ccatgctcaa
    15121 ttaatttttc aataatatat tcatctgaag aataattatc gtaagatata tctaacatat
    15181 caaaacactt actgtaatcc aataaatcat atatatcttg aatatttaaa tttgatttag
    15241 ctatttcatt ttcaaaagaa aagcctgaaa gaacttgcca taattttttc tctttttctg
    15301 gatatttatc caattctttt ctattactgc ctatccttat ataagctttt tcttcaaatt
    15361 ttattggtga aatcttagtt gcctcaattt caaataccac caacctgatt tctttttccg
    15421 ttatttcatg aattttaaat tctatattag gttttaaaac tttatgcaac caactttcaa
    15481 gctcttcatt tccctttttt tcttgttttg gtttaaaatt tgtaccgaca atattaagcg
    15541 taccatcttc aatgccaaaa attatatatg ctttatctat acccagtaaa gcagctgtat
    15601 ttgacaaagc agaaatattt tttcctaata caataaaatc tttattattt ttcttatatt
    15661 caaccacttc attctcaaat tggtttgctt ctaacaatct tagtacaaat ttaaaatcca
    15721 taaccgtcct tatcatttaa tcttctctaa gttttttaag ataatttcac ttagctcttg
    15781 ctcagttttg atttgggatt ttaactttgc taaaagctcg ttaaatctag tatcaaaatc
    15841 aaactcatca tcactatcag caagccccac ataacgccct ggggtaagca cataagaaag
    15901 ctctcttatc tcatctatgc taacactttt acaaaagcct tttatgtctt cataatcagt
    15961 gccgtttttc catgctttat aaatatttgc gatttggttt atatcgtctt tgtttagggt
    16021 tttgttgcgt ctatttatcc tagttcctaa atctcttgca tctataaaaa gcgttttttt
    16081 gactgtcttt ggtagctttt ggcgtcttat aaaccaaagt gatgcaggaa tacctgtatt
    16141 taaaaacagc tttgcgggta gatttactat acaatctatc aaatcatctt caataagtgc
    16201 ttttctaatg gctgcttcat ttgtggtgtt gcttgtaagt gcgcctttag ctaggacaaa
    16261 tcccgctaca ccgccgtttg gtgatagatg atataaaaag tgctgtatcc aagcgtagtt
    16321 ggcgttgctt gctggtggga cgccgtattt ccatctgcca tcgttttcta acagttcgcc
    16381 gctccagtcc gagtcgttaa atggtggatt ggctataata aaatcggctt ttaagtcttt
    16441 atgagcgtcg tttaaaaatg agccttcgtt gttccatatc acttgtgagc tttcgatttt
    16501 tcttatggct aggttcattt tggcgagttt gtaggtagtc tgatttgact cttgaccata
    16561 gattgagatg tcatctagtc tgccttggtg agattttaca aactcttcgc tttgaacaaa
    16621 cataccgcca cttccacagc aaggatcaaa cactctgcct ttatatggct caagcatagt
    16681 tactaggagc tctacgacgc attttggagt gtagaattgt ccgccttgtt tgccttcagc
    16741 tagggcaaat tcacctaaaa aatactcaaa tacatgacct aaaacatcgg tgcttttacc
    16801 agtgtcaaag gcgatatttc ctataagatc tataagttcg cctaggcatt tactatctaa
    16861 gttatctttg gcatagactt ttggcaaaac tccttttaga gtatcgttgt gtttttctat
    16921 ctcgtccatt gcttcatcta gcattttgcc tattttggga tttttggcgt tatctcttat
    16981 gtagttgtag cgagattttt ctggaacgaa gaagatattg tcagctaggt attcatctgc
    17041 atcttctggg tcggctccat catcttgttc ttttaataac tcttcgtatt tttgcataaa
    17101 gctatcgcta atgtagcgta aaaatataag tcctaaaact atgtgtttat actctgctgc
    17161 gtcgatattt ttgcgtaatt tatcagcact tttccataac gcatcttcta gttttatttc
    17221 ttttttcttt gccattttta tccttaaata attttattaa gtataacaaa tagtatttta
    17281 aaagcaaatg atgataaggt gtattactac gagcttatac caccttacaa gcttactaaa
    17341 aacaagcctt tagaatacgc acattttaag gaatttctaa aatgctacaa agaaaagaaa
    17401 aatcactgct aattcttggc tgcttagcaa aaaagaactt gaagaaagaa attatgattt
    17461 aagtgctaaa aatccaaatg taaaagaaga aaaaatccta agaactagcg aagagatttt
    17521 aaattcttta gaagaaaatt taaaacttca aaataagtat ttaaaagaaa taaaagatgc
    17581 cttaaaagca taaggcatct ttatttatag gcttattacc ccaatgcgtg tgttttcata
    17641 gcaagaatta agcactatgt ctatcatagc actagcataa tcactatagc tgattttact
    17701 ttcattgttg gcattcactt caaatttttc gcctatgatt ttataatgat tgctttttgg
    17761 aagatctggt gaaaaaatag cagatgggct cacatatacc catttaaaac ctttttcatt
    17821 gcgtaaaaat tccaatactt ccgcacttgc tttagctata tccaaatact ctttaggaaa
    17881 atcaggcata tccataagtc ttgtagtatg attctcatcc atatacaaac ttccagcacc
    17941 ccctacaaca aataatttag ccttacttcc ttgtaaaatt acactcaagc attctatatg
    18001 ctttttatgt aagcttaaat tttcccattc tccaaaagcg tcaataataa tatcaaaatc
    18061 tatcagatct ttagaatcaa gttcaaaaag atctctttgt actattttag cttgaggtaa
    18121 aaattcattc attttagagc tattgcgtac aaaacatact ggctctaaat ttctttttaa
    18181 agcttctttg ctgatttctt tgcctacttt accgcttgca cataaaattg ctattttcat
    18241 aatatctcct ttttaagtat ttttacataa aaaatgcaat ctagaaatta taaatatatt
    18301 tactactaaa aatcaagtag atattatttt ataatatagt atctat
//
LOCUS       DARBAR010000023        18302 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.023, whole genome shotgun sequence.
ACCESSION   DARBAR010000023 DARBAR010000000
VERSION     DARBAR010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18302
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.023"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            101..515
                     /locus_tag="SB815_000573"
                     /pseudo
     CDS             101..515
                     /locus_tag="SB815_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853469.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            511..1320
                     /locus_tag="SB815_000574"
     CDS             511..1320
                     /locus_tag="SB815_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0906338.1"
                     /translation="MSFNITSNLVGITLGLILAESISNYFGNWRDSLSFYAWINLILL
                     ILWLFVGKDENKKEEKKNNAKDLIYALKSRVAWGMIIFYIGPILFLNSLFTFLPTFYA
                     QYASFSKELADFAKKEIPALANFAIIFGPYLGLFFKRKNISFKIMLLSGGACIFICGF
                     CMLFLQNLVLIQIFAVLSGIFYSMWFPFFFNLPSELKISNPNQTAYIMSAFWSITFVI
                     LSFNLWVVSWSIDKTHSFTLGFVYIFALIFISAILAQFVLPRRENFIQGEK"
     gene            1322..2473
                     /locus_tag="SB815_000575"
     CDS             1322..2473
                     /locus_tag="SB815_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG0906339.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELYTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGRDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GIAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNYRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(2477..3217)
                     /gene="yaaA"
                     /locus_tag="SB815_000576"
     CDS             complement(2477..3217)
                     /gene="yaaA"
                     /locus_tag="SB815_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEG0906340.1"
                     /translation="MKILFSPSESKNENCTKNPIDENSFIFKELFPYRMEALKHYEEF
                     IKNASLQNLQELFGIKNENEIDKFKHDLKQAPTQEAIMLYTGISYEYLNFKILDKKSQ
                     AYILENTLIFSNLFGVVRANDTLPFYKFKQGAKIGNFTIEKFYKEHFSKALDEYLENE
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISHFAKAYRGILLSISAKNQVKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIALEILD"
     gene            complement(3310..4428)
                     /locus_tag="SB815_000577"
     CDS             complement(3310..4428)
                     /locus_tag="SB815_000577"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JlpA-like lipoprotein"
                     /protein_id="HEG0906341.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLTKDNNDEYQELFQAKNIKIRSNEIY
                     KGEANASISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKISSFI
                     NKLSSDSYTLSFDNSINKQENNYLDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLVMDKQAINELLNIANYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     ITTAKENLQTLKAQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYST
                     QGIDSIEKLSINNQDATEALKIILPFIMFSMLMGGASF"
     gene            4647..5486
                     /locus_tag="SB815_000578"
     CDS             4647..5486
                     /locus_tag="SB815_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG0906342.1"
                     /translation="MKKILLSVLTAFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCSPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            5526..6773
                     /locus_tag="SB815_000579"
     CDS             5526..6773
                     /locus_tag="SB815_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0906343.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYKICSIFSIAFIIFGMLFGFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFARSKIKELSIVF"
     gene            complement(6756..8024)
                     /locus_tag="SB815_000580"
     CDS             complement(6756..8024)
                     /locus_tag="SB815_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEG0906344.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNLLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLSFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGG
                     ERINSIPKHAKALVHFKDEVKSNNWIKCEFKEENEFEICDQSKKLLSLINSFTHGVRA
                     YDENLDIVQTSINLATLRMQDNQIKFALFARSNILDGLKQVEFETLEFFKAFDFKIRS
                     FNFYPPWEGKPNALSDMVFKALKKVSPNAKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
     gene            8092..8619
                     /locus_tag="SB815_000581"
     CDS             8092..8619
                     /locus_tag="SB815_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEG0906345.1"
                     /translation="MRINYKKIFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEII
                     YKNKDTYGRIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKE
                     SNPIEPYKWRKHNKF"
     gene            8628..8801
                     /locus_tag="SB815_000582"
     CDS             8628..8801
                     /locus_tag="SB815_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0906346.1"
                     /translation="MKKYTLMVLLVLGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(8802..9380)
                     /locus_tag="SB815_000583"
     CDS             complement(8802..9380)
                     /locus_tag="SB815_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906347.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(9453..10343)
                     /gene="cmoB"
                     /locus_tag="SB815_000584"
     CDS             complement(9453..10343)
                     /gene="cmoB"
                     /locus_tag="SB815_000584"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HEG0906348.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLGDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     SLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
     gene            complement(10439..12163)
                     /locus_tag="SB815_000585"
     CDS             complement(10439..12163)
                     /locus_tag="SB815_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HEG0906349.1"
                     /translation="MLEQSPYKEDANSKNYNNTLKVKDGVIIIDHSNTSDDNNSKTIN
                     TKKNTQKNQPNLSNDNTLKTKTPNSNTPSLKNTSKEESIHKVSFSFHITNKNINFKDL
                     GLDEQVLQEALNDYKKESISVQDLQDIANIISYYVQVSGYPAATAYIPQQELKDQIQI
                     NITLGVLGKYVVQNNSSVRDYAIESKLPNHKGEIITTKLVEDAVYKVNEMYGIQTLAS
                     LKAGDNPGETDVVIETTPSDSFVSVLFYGDNYGIKESGRYRDGVSMSFNNIAHQGDSL
                     NAYLQRSDEAQTNYSISYTTFLGNLKITPSYSKRNYALGGAYKNANFIGTSENLGIDL
                     KYPLWITTYNSFYLTSSYYHKKLSNSRLNIMTIDKSSDTISFSIEGVYNGISNDSFSY
                     SANVSYGNVKDGGTTILGMSSKTDGDGFGKFAKLNVNLNNAYFFNDTFTHLFSLNYQQ
                     VVNGATLDSSETISLGDPYGVRAYNNGEGEGDNAVVASFGLRMATPLKDFYITPFYNI
                     GYSWYENDSKLYRASETNYMDAYGLQLLYNKTGNFYVKLDLARALKKYKLDDDYSSKA
                     YVSFGKYF"
     gene            complement(12221..12361)
                     /locus_tag="SB815_000586"
     CDS             complement(12221..12361)
                     /locus_tag="SB815_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906350.1"
                     /translation="MLKMIKIQKVKSLLDLVKKLKNKQSLKIKNQTNTKENLNKTHYL
                     TI"
     gene            complement(12624..12947)
                     /locus_tag="SB815_000587"
     CDS             complement(12624..12947)
                     /locus_tag="SB815_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906351.1"
                     /translation="MTKGQENAQKTYDTAVNAYNEAVKACNTALSGITGNNGDKVIAG
                     LKQAIDKVSSDLQQATIALQIATASTNSSLENSNKTLASASINGTSHLTVNENIVQTI
                     SQYPL"
     gene            complement(12949..13278)
                     /locus_tag="SB815_000588"
                     /pseudo
     CDS             complement(12949..13278)
                     /locus_tag="SB815_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049823.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hemagglutinin"
     gene            complement(13344..13646)
                     /locus_tag="SB815_000589"
     CDS             complement(13344..13646)
                     /locus_tag="SB815_000589"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906352.1"
                     /translation="MKEFTKDGKLSAFKGNPKTISPVIKSNAGNVINLETITVGERVA
                     MAGNQVSNMKYGGTDYGKFIFTNKKEQSNTVYLNVYSNDTFVIRGPASNTIKKKTL"
     gene            complement(13658..13988)
                     /locus_tag="SB815_000590"
                     /pseudo
     CDS             complement(13658..13988)
                     /locus_tag="SB815_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856868.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            complement(14357..16645)
                     /locus_tag="SB815_000591"
     CDS             complement(14357..16645)
                     /locus_tag="SB815_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906353.1"
                     /translation="MEKFCFKLSIVTFLSINAFAATQANTTDNRNFNIPEHYFNDNEL
                     YDKTNSTYKKLQGINYYAKSSKQYINNITLIYNNPKPNITNINDLNFKHYLLTPDMRE
                     DEVLSFKARHGVNTAGHSIKTVRVLPFLITAKTDHADASYNKLILEQGELSSVFYLKP
                     KDTHIKNPSNSKSNQRMNFLMSSTFTHYGNASYNQTILQKDAHISMGVENTYDLALNG
                     APYLIGAIATYGDSTNNSLNIEAGSSVEFFTSLPKKDKNGNNTFDERITHLVGGLAYQ
                     GNVKNNKIFIKDANMIIHGPSKAYASLAAAHISAGYIDSGTDKNFQASKNLLDIDGFN
                     LDMYMNHDKQPLAYNSVLFADFWGGKTEQGQALDNTINLKDIKNLKKDKNNENIFAQA
                     LFNFYAGASNNGEANYNTLNIELKHPLEIANNFLGYNQHSFYGGFATKGANHNTINIK
                     NDLTTTDLSQSYKDALNIVAARTLEGSADYNKVYINNSMSTLPVYIYTAKKNILNNQD
                     FYPSSANNNEVVIKDFASFRNLTVLTEAKEASYNTINYNNVQSITDVSNIDKGSKIII
                     RALDKANHNTIDIKNYSSNAADNAYLIMAYNEAAYNKIIINDTLFGVASDKREGILSI
                     IAGLSNNAHDNTLIINNLNLDEYKNNNSIFIAPSAITGLSEAKSYNNTLYIGGNLNIF
                     KNTFIDILAGALVHYEDNYSASNAAAPSDISLSKNNRLILNTKVEARIINNFEHYYLI
                     VSNKINTTPLLKSYDAPINISS"
     gene            16788..17162
                     /locus_tag="SB815_000592"
     CDS             16788..17162
                     /locus_tag="SB815_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG0906354.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERARSEIFFNKKVDIFDAS
                     KGHFLLAKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILLFKMELTLA
                     FIKNEKPARMDMQLKKLFEELF"
     gene            complement(17154..>18302)
                     /locus_tag="SB815_000593"
     CDS             complement(17154..>18302)
                     /locus_tag="SB815_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906355.1"
                     /translation="LNAKEQKLVDVKPVENFYPKLSVQECNTNCLFDLLESRLYLSFL
                     SEFADQNDQFLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEKTIKSYSNTIINSSI
                     AYLLRQRAEIKVKVFLTGTEDSNKIRAALDAAQAQGYQYAIAGFTLKGANELKNYSGN
                     MKIFIPTIHKNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAIFSDGSALSSNLNSR
                     ILAQNNNARIYTIEGEKLDFSRLLRSQGGVNNASIFFNTPLIKTALASSQLRIYNIHP
                     YVLLSTQINYNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNEIFNQSIDYNWIAYA
                     TSIGVDYFYTEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASFEELK"
BASE COUNT         5814 a         2529 c         2890 g         7069 t
ORIGIN      
        1 atatataaaa aaataattaa attaaaaaaa taattaaaga taataaatat cttatttttt
       61 tatgtttata ttttaataaa tatctaaaaa ggattttaat atggaaaaat cacttttatt
      121 tcattttaga cacattggag ttgaatttat catttttagt gtttatgctg tttttagtat
      181 ctcttgggca gcaacagggt ctttaatgcc tttgatttca aatgatcttg ccctaaatac
      241 tcagcaagct actttaatca ctagtatgat agtagttgcg aaaatttttg gtgcttcatt
      301 tactgctttt ttggtttata aattcggatt aaaaaaggga tattttttag gctgtatttt
      361 aatgagttcg ggtatctttt taagttttgt agatagttat agtggtattt tgattataag
      421 atttttaaca gggcttggtt cagcttgtgc tttagtttgc ttagtgccta ttgcacagca
      481 atggtttgaa aaaaagcttt gcattttgta attagtttta atataacttc aaatttagta
      541 ggcattactc taggacttat tttagctgaa agcatctcaa attattttgg aaattggaga
      601 gattctttat cattttatgc ttggattaat ttgattttat tgattttgtg gctttttgta
      661 ggtaaagatg agaataaaaa agaagaaaaa aagaataatg caaaagatct tatttatgct
      721 ttaaaatctc gtgttgcttg gggtatgatt attttttaca tagggcctat tttattttta
      781 aattctcttt ttactttttt accaactttt tatgcacaat atgcgagttt tagtaaagaa
      841 ttagctgatt ttgctaaaaa agaaattcca gctttggcta attttgctat tatttttggt
      901 ccttatcttg gattattttt taaaagaaaa aatatctctt ttaaaataat gctattgtct
      961 ggaggagcgt gtatttttat atgcggattt tgtatgttgt ttttgcaaaa tttagtattg
     1021 atacagattt ttgctgtgtt atcaggcatt ttttattcta tgtggtttcc atttttcttt
     1081 aatctacctt cagaattaaa aatttccaat ccaaatcaaa ctgcttatat tatgagtgct
     1141 ttttggagta ttacctttgt tatactatca tttaacctat gggtagtatc ttggagtatt
     1201 gataaaaccc atagttttac tttgggtttt gtttatattt ttgctttgat ttttatttca
     1261 gcgatcttag cacaatttgt tttgcctaga agagaaaatt ttatacaagg agaaaaatag
     1321 aatgaattta attccagaaa tactagactt acaaggcgaa tttgaaaaaa ttcgtcatca
     1381 aattcatgaa aatcctgagc ttggttttga tgaattatat actgcaaaat tagtggcaca
     1441 aaaattaaaa gaatttggtt atgaggttta tgaagaaata ggaaaaacag gcgttgtggg
     1501 ggttttaaaa aaggggaata gcgataaaaa aataggactt cgtgcagata tggatgcttt
     1561 gcctttgcaa gaatgcacaa atttgcctta taaaagcaaa aaagaaaatg taatgcatgc
     1621 ttgcggtcat gatggacata ctacttcttt attgcttgct gcaaagtatt tagcaagtca
     1681 gaattttaat ggtactctaa atctttattt tcaacctgct gaagagggct tgggtggtgc
     1741 taaggcaatg atagaagatg gattgtttga aaaatttgat agtgattatg tttttggatg
     1801 gcacaatatg ccttttggta gagataagaa attttatctt aaaaaaggtg cgatgatggc
     1861 ttcttcggat agttatagca ttgaagttat tggaaggggt ggtcatggaa gtgctccaga
     1921 aaaggcaaaa gatcctattt atgccgcttc tttgcttgtt gtggctttgc aaagtatagt
     1981 atctcgcaat gttgatcccc aaaattcagc agttgtaagc ataggagctt ttaatgcagg
     2041 gcatgctttt aatatcattc cagatattgc aacgattaaa atgagtgtta gagcattaga
     2101 taatgaaact agaaagctaa ctgaagaaaa aatttataaa atttgtaaag gtattgctca
     2161 ggccaatgat atagaaatta aaatcaataa aaatgttgtt gcaccagtga ctatgaataa
     2221 cgatgaggcc gtggattttg ctagtgaggt tgcaaaagaa ttatttggcg aaaaaaattg
     2281 tgaatttaat tatcgtcctt taatggcaag tgaggatttt gggttttttt gcgaaatgaa
     2341 aaaatgtgcc tatgcttttt tagaaaatga aaacgacatt tatttacata attctagtta
     2401 tgtttttaat gataaacttt tagctagggc tgcaagttat tatgcgaagc tagctttaaa
     2461 atacttaaaa taaaaactaa tctagaattt caagcgcaat ttcttccttt aaacctttga
     2521 tttgaatttc tttgagtttt agatttgaag gaaggtttgc taaaagctct ttattgtttt
     2581 ttacttggtt ttttgcactt atggagagta aaattccccg gtaagcttta gcaaaatgac
     2641 tgatgacttt accatttttt acaaatttat aggtataaaa tttctttttt ggggtataga
     2701 atttatcata aaatcctgct ctaagatcaa gtatttcttc attttccaag tattcatcta
     2761 aggctttact aaaatgttct ttataaaatt tctctatggt aaaatttcct attttagccc
     2821 cttgcttgaa tttataaaag ggtagggtat cattagctct tacaacgcca aaaagattag
     2881 aaaatataag agtattttct aaaatataag cttgactttt tttatctagg attttaaaat
     2941 taagatattc ataacttatc ccagtgtaaa gcattatagc ttcttgagtg ggagcttgtt
     3001 ttaagtcgtg tttaaattta tcaatttcat tttcgttttt aatgccaaaa agttcttgta
     3061 aattctgtaa acttgcgttt ttgataaatt cttcataatg ctttaaagct tccattctat
     3121 aaggaaataa ttctttaaat ataaatgagt tttcatcgat gggatttttt gtacaatttt
     3181 catttttgct ttcactaggg gagaataaaa ttttcatttt agcctttttt gttaatgtta
     3241 tgaaaacatt aagagcaaag aaatttaatc ttgcttttaa tgtttttgaa gtttttatca
     3301 ttttaaaatt taaaatgacg ctccgcccat taacatagaa aacatgataa atggaagtat
     3361 aatttttaac gcttctgtgg catcttgatt gttgatgctt agtttttcta tgctgtcgat
     3421 tccctgtgtg ctatagtcac taacagggat gtttttaaat tttaaatcaa gattgagttt
     3481 ataatcatcg ttttgagtga tattatttaa aatagctaaa gctttatcaa agattaatgc
     3541 ttgttcttca ttttgacttt gagcttttaa ggtttgtaaa ttttccttag cagttgttat
     3601 atagctacta aatacgcctt cggttttaag agttgaatca attttaaaat tatttaagat
     3661 gatgtatttt tggattgtat tgctaaaatc tgaagcttgt tcgtagtttg ctatattaag
     3721 aagttcattg atagcttgtt tatccataac taaagtttga gtgttaaatt ttataccctt
     3781 agaatcaagg taattaagca aatcttcttt tagatttata tttagatttg tattgaaatt
     3841 taattttgcg ttataaaatt ttatatcaag attatctaga taattgtttt cttgtttgtt
     3901 tatggagtta tcaaatgata aagtataaga atccgagctt aatttattga taaaagagct
     3961 gatttttgga tcttgttgaa ataagcttgc attgatgtca ctaacaactt tttctccaag
     4021 tttaaaatct tcaaaaacca aatttgattg tatgcttttt tggtttttaa aaagatcgtt
     4081 gtaatattct ttaatgctaa ttgatgcatt tgcttcgcct ttgtaaattt catttgagcg
     4141 aattttgata ttttttgctt gaaatagttc ttgatactca tcgttattat cttttgtaag
     4201 agttttaaaa tttggactta aacacgctat aaaatcacca tctgcattgc atttaaaatc
     4261 agaaaattca atctttattc cagaatcctg agaaaggctt gcaatttctt gtttaactgt
     4321 ttgatttagt tgattttcat attttttaac tgttttttca tctatggaat ttccgcaagc
     4381 tgaaaacaaa acagctattc caatagagag aaaaatacct tttttcatag ttttctcctt
     4441 aaaaatttaa aaaaagatta tatctttttt tacttaaaat ttaaacaatg ctaaaagaga
     4501 gtgtgagatt aattacattt ttacacatag gaaaatcttt ttagtttgtt tcaaatgcat
     4561 tatttataat tttaagtata attaactttg caattattat atatttttgc aatagcttta
     4621 agcttatttt taaagaaagg aaatgtatga aaaaaatact tctaagtgtt ttaacggcct
     4681 ttgttgcagt agtattggct gcttgtggag gaaattctga ctctaaaact ttaaattctc
     4741 ttgataagat caagcaaaat ggagttgtta ggattggggt atttggcgat aaaccacctt
     4801 ttggttatgt ggatgaaaaa ggaaacaatc aaggctatga tatagcttta gctaaacgca
     4861 tagcaaaaga actttttggc gatgaaaata aggtgcaatt tgttcttgtt gaagctgcaa
     4921 atagggttga gtttttaaaa tcaaataaag tagatattat tttggctaat tttactcaaa
     4981 ctccgcaaag ggcagagcag gttgattttt gctcgcctta tatgaaggta gctttaggcg
     5041 tagctgtacc aaaggatagt aatataacta gcgtagaaga tttaaaagat aaaaccttgc
     5101 ttttaaacaa aggcacaaca gcagatgctt attttacgca aaattatcct aatattaaaa
     5161 ctttaaaata tgatcaaaat accgaaacct ttgccgcttt gatggataaa agaggcgatg
     5221 ctttaagtca tgataatacc ttactttttg cttgggtgaa agatcatcct gattttaaaa
     5281 tgggtattaa agagttaggt aacaaagatg ttatcgcacc agcggttaaa aaaggcgata
     5341 aagaacttaa agaatttatc gataatttga tcatcaaact aggccaagag cagttttttc
     5401 acaaggctta tgatgaaact ttaaaagctc attttggaga tgatgttaag gccgatgatg
     5461 tagtgattga aggtggaaaa atttaataaa gggctttttg ccctttagtt gatttaggat
     5521 aaaatatgca aaaaaaatac aaaaatatta tttatgcttc tttgggtgga attttagaat
     5581 tttatgattt tgtgcttttt gccttttttt tggatatttt tgctaaggta ttctttccgc
     5641 aaaatgatgc tttttggatg cagataaatg cttatatagc ctttggtgct gcttatttag
     5701 cgcgtccttt tggttctatt gtgatggcac attttgctga tagatatgga agaaagaata
     5761 ttttttatat ttctatgctt ttgatggttt tgcctagttt tgctttagct tttttaccaa
     5821 gttatgaaag tataggtata tttgctactt tgattttatt tactattcgt attttgcaag
     5881 gtttagccgt tggaactgag gtgagcggag cttggattta tgtgagcgaa tttgttaaag
     5941 ggcgtcaaat tcctttggct cttggtttta tttcagcgac tttaaccata ggtttattgc
     6001 taggaaatat tgccactttg ggcataagat cttattttac cccagaagaa gttcaaagct
     6061 atgcttggag aattcctttt atcataggag gattttttgg aattttagct ttgtttttaa
     6121 gaaataaact cagcgaaact ccagaattta taaaagttca aaatgaaaag aaaattttaa
     6181 gttttccatt gtttgaagct ttgaaaactc ataaaatgag tatgcttgtt tgttttttaa
     6241 tgaccatggt tttaacaagc ggtgtggcaa ctttgatgat tttgcctaag tattttgaaa
     6301 gtcttttagc tatgagtaaa acttctgctt tatgggtgca aaattttgct attttagcgg
     6361 tgatttttgg agctttattt caaggttttt tagcaagcaa atggggaagc tataaaattt
     6421 gctctatttt tagtatagct tttattatct ttggtatgct ttttggtttt tatgatgaga
     6481 attttttatt ttatttttta ctggcttgtt ttgcacaagg tattattact ttcgcgcctg
     6541 tttttatgac gcaaattttt aaaagcgaac ttaaatttag cgggcttagt tttgcttata
     6601 atatttctta tgcgatttta ggttttttaa ccccttttat agttaatgct ttttataaag
     6661 agtatttagg tatttatctt gctatagtgg gatcttgctc cttgctttgc gtgtttttgt
     6721 taaaacgcgt ttttgcaaga agtaagatta aagaattaag cattgtcttt taaaacttca
     6781 aaaacaacct tagatatttt ttcaactgaa gcgatttcac aatgctcatc agttgaatga
     6841 ggattatgga tatttgggcc tatagaagcg cataaaagct cttgtttttt ctctataatg
     6901 ccacactcaa gccctgcatg gatagctgaa actttggcat taggcgatac ttttttaagt
     6961 gctttaaaaa ccatgtcgct aagtgcgttt ggtttacctt cccaaggtgg atagaaatta
     7021 aaacttctta ttttaaaatc aaaagctttg aaaaattcta aagtttcaaa ttctacttgc
     7081 ttaagtccat caagtatatt agatcttgca aaaagtgcga atttgatttg gttatcttgc
     7141 attcttaaag tagctaggtt aatgcttgtt tgaactatat ctagattttc atcataagct
     7201 ctaactccat gagtgaaaga atttataagg cttaaaagtt ttttactttg atcgcaaatt
     7261 tcaaattcat tttcttcttt aaattcgcat tttatccagt tattactctt tacttcatct
     7321 ttaaaatgca ctaaagcttt ggcgtgttta ggtatagaat tgattctttc tccgccttca
     7381 aaagaaatga tttctccttc attttcttgt atgaatttag ccatttcttt gatggaactt
     7441 ttttcattgc gtatgatatt tatgcctgag tgtccacctt taaaattttg cgcacaaagc
     7501 tcgtaaattt tacccttttt tctaagggta ttaaaagaca aacttgcttc tatatctact
     7561 ccacctgcac agcctatcat gatctcatca tcgctttcat gatctaaatt taaaagcatt
     7621 ttagattcta aagtgtgctc gagtaaattc actcccatga gtcctacttc ttcatcgttt
     7681 gtaaaaagac attctaaatt ttcaaattca gccatagcac tcatcatgat ggctatacct
     7741 atgccattat ctgcaccaag acttgaattt ttggctctta aaaagccatt ttcttcataa
     7801 acttctaagt ttggtgcatc gcccatacag accatatcat aatggctttg tagacaaatt
     7861 tttggtttgc cttttatggc atggatattt cctgccttat ctacactcac cttaaagcct
     7921 ttatctttgg cgtaagagct taaaaattct ttcatttgtt ctgtttcata actgcaatga
     7981 ggaattttgc ataattgttt aaaattttct ataacatttt gcattttatc tcctttgttt
     8041 tgataaaatt atggcatatt ttttaaaatt taaaggcaaa atgattaaaa aatgagaata
     8101 aattataaaa aaatatttaa tctgagaaaa ttactaagtg atccaaaaaa acttttttct
     8161 gtattaatct tcactcttgt agttgttttt atccagaact atattgccca aaattctagt
     8221 tttgaaggaa aagtagttag aattattgat ggagatacta tagaagttaa tcatgaaaac
     8281 aaactcgcta gaataagatt tttcggtata gatgcaccag aacttaaaca aagttttgga
     8341 aagcagtcaa aagaagcttt aagtagaatt ttaagtggca aacaagttga aattatttat
     8401 aaaaataaag atacttatgg tagaattgtt gctattgtaa agcttaatga tgttgatatt
     8461 aatcgatttt tggtaagcaa aggctatgct tgggctgata cttactatag taacgcttat
     8521 accaaagaac aagaaaatgc taagaaaaat catttaggtc tttggaaaga gagtaatcct
     8581 atagagcctt ataaatggag aaaacacaat aaattctaag gaaaaacatg aaaaaatata
     8641 ctttaatggt gctattagtt ttaggaattt ctggatgttt tgtaaatgaa agagggattt
     8701 caaatcgttt ttatgatgat tgtaaagagt attatgatgg aagcggaact tatcataagg
     8761 attgcccaaa aaattgggta gatattaaaa tgactccttg attattttcc acccacagag
     8821 gccattaatg cagctgctac ggcttctgga ttgttgattt tggcaccttg ttcttgattt
     8881 tctgtaggtt taacagtgtt aagtggcgga cgcttgagtt taaatatatg ctcatcggtg
     8941 ctaacaactt gtatcgttcc ttcaaacatt ttaacttctt taacatgtcc aaccactttt
     9001 acatctcttt ttttggaggt ttcgtcaaaa agtgcatgag cttcaagttc taaaacatcg
     9061 cctaatttaa gcggagcata aaaaaaacat tttgatccaa taatcactga aaattcttta
     9121 ttgatagagg cttgtgctac atagtttgct gcagcgaaaa taaaggcatc aaaaatcaat
     9181 ccttgatcat ctgctaccat ttcgcttgtg gttattaaaa ttgatttggc atagttttta
     9241 tcaatttcga taatggttcc agcaagtgag gtgtttaatt caggacaagt gagtaattct
     9301 gctctaacgc gagatatatc ttctgcagat gcgtattctt caagttgtgc atattcttca
     9361 aaattatctt tttttgccat atctaacctt taaattctac ttatctactt caaaatatct
     9421 aaaattcaat atcggcaaaa aataaaaaga atttatattt taatgcgtat ataaactctt
     9481 ttgggtgctt catagccttc aatggtaaga tttttatcct ttggatctaa gaaattttcc
     9541 agcgaaaaag agtctatcca ttctgttttt ctttgttcgt tttcatcggt tttttttgta
     9601 gccaaaactt caaattcttt aaatcctgct ctttcacacc agttttttaa tgcactaatg
     9661 cttggtacaa aataaatatt tggaatttta gaataagttt tattaggcac aagagcgatt
     9721 tctctctcat cttctatata catggtatct aaaaaaacaa ctccattttt attaagtcct
     9781 gcttttaaat cttttagcat ttttatagga tcacttctat gataaatcac cccaagacag
     9841 aaaatcacat caaatttcaa gctatagctt ggaagatctt ctacgcctaa aagttcgtat
     9901 tttataggag ttttagctaa agcgttaatg agttcaaatt gcaaacggta tttgatagaa
     9961 ggatcaaaac ctatgagttt tgcaggatta aattcaagca ttttaaacat ataataacca
    10021 ttattacagc ctatatcagc aacgcatttt tgagaaattt cgttcatgaa aggctttaga
    10081 atgttgaatt taataaaact ttgccattct gtatcgatga aaagatcgtc tattttaaaa
    10141 ggaccttttc tccatggttt aagttctttt gctatagcta agatttcatc tttggcttga
    10201 gaatttgtag ataaattcac gctatcgcct aaagaaaaat tacaagcaag attgagagct
    10261 ttaagttctt gaattttagc gtataaaggg tgatttagaa attgtttttc aagtaaattt
    10321 tcttgcattt ttatccttga catttgcttt taatgctaaa ttataacatt aaaagctttt
    10381 atggcaatat aaatctcata tgcattaagt atttgatcaa aaataaattt ttaaaaactc
    10441 aaaaatactt cccaaagctt acataagctt tagaactata atcatcatct agtttatatt
    10501 tctttaaagc tctagctaaa tcaagcttga cataaaaatt ccctgtttta ttataaagca
    10561 gttgtaaacc ataagcatcc atatagtttg tttcacttgc tctatatagt ttagaatcat
    10621 tctcatacca agaataacct atattataaa aaggagtgat ataaaaatct tttaaaggag
    10681 tagccattct aagtccaaag ctagccacta cagcattatc tccttctcct tctccattat
    10741 tataagccct tactccataa ggatctccta aagatatagt ttcactacta tctaatgtag
    10801 ctccattgac aacttgttga taatttaaac taaaaagatg agtaaaagta tcattaaaga
    10861 aataagcatt gttaagattg acattgagtt tagcaaattt tccaaagcca tctccatctg
    10921 ttttagaact cattcctaat atagtagttc ccccatcttt aacattacca tagcttacat
    10981 tagcactata agaaaaacta tcattactaa tgccattata aactccttct atactaaagc
    11041 ttatcgtatc agagctttta tctatagtca tgatatttaa tcttgaatta ctaagctttt
    11101 tatgataata acttgaagtt aaataaaaag aattataagt cgtaatccac aaaggatatt
    11161 ttaaatctat acctagattt tcagaagttc ctataaagtt tgcattttta taagctcctc
    11221 ctaaagcata gtttctttta gaataacttg gagtgatttt taaattccct aagaaagtag
    11281 tatagcttat actatagtta gtttgtgctt catcgcttct ttgcaaataa gcattaagac
    11341 tatctccttg atgagctatg ttattaaaac tcatactgac accatcccta tatctgcctg
    11401 attcttttat accgtaatta tccccataaa acaatacaga aacaaagcta tcactagggg
    11461 tagtttctat cactacatct gtttcacctg gattatctcc tgcttttaaa gaagcaaggg
    11521 tttgtatgcc atacatttca ttgactttat aaactgcatc ttctactaat ttagtagtga
    11581 tgatttcacc tttgtgatta ggtaatttac tttctatagc ataatctctt acactagaat
    11641 tgttttgaac cacatattta cctaaaacac ctaaggtgat attgatttga atttgatctt
    11701 ttagttcttg ttgtgggata taagctgtag cagcaggata accactaact tgaacataat
    11761 aagaaatgat attggctata tcttgtaagt cttgaactga aatactttct tttttgtaat
    11821 cgtttaaggc ttcttgtaaa acttgctcat ctaaacctag atctttaaag tttatgtttt
    11881 tattggtaat atgaaagcta aagctaactt tatgaattga ttcttcttta gaagtatttt
    11941 ttaaagaagg agtgtttgaa tttggggttt tagtttttaa agtattatca ttagacaagt
    12001 taggttgatt tttttgagtg tttttctttg tgttgatggt ttttgaatta ttatcatcac
    12061 tagtattaga atgatctatg ataatcactc catcttttac ttttaaagtg ttgttgtagt
    12121 tttttgagtt agcatcttct ttataaggag attgttctaa catttgtatg gttttttatt
    12181 atctttagta tcactagcat aaaggcttaa gatagctaaa ctagatagta agataatgcg
    12241 ttttatttaa attttcctta gtgtttgttt gatttttaat ctttaaactt tgtttgtttt
    12301 ttaatttttt aacaagatcc aaaaggcttt taaccttttg gattttaatc atcttgagca
    12361 aggatttcct gctttaaaat tatccgatac tatacaacat taccactttc ttgagtactg
    12421 gcttcatcta tacttgcttg tttatcatct tcattgatat ttggatcttc atctgtagtt
    12481 tgtataaaaa gctgtagcaa tgccaggttc ttgttgtcct atggtatcat ttgggttatt
    12541 attagaaccg ttgttgttgc tattgttaat atcacctgaa tcggttccat cgtttctgtt
    12601 gttggagttg ttagatccta aatttataat ggatactggc ttatagtttg cactatattt
    12661 tcattgactg taagatgact agttccattt atgctcgcac ttgctaaagt tttattagaa
    12721 ttttctaaac tagaattagt actcgctgta gcgatttgaa gagctattgt agcttgttgt
    12781 aaatcactag aaactttatc tatagcttgt tttaaacctg caataacttt atcgccatta
    12841 ttacctgtta taccacttag agctgtattg caagctttaa ctgcttcatt ataagcattt
    12901 acagcagtat cgtaagtttt ttgagcgttt tcttgccctt tggtcatttt aggaattttg
    12961 agaaagaatt tcctttgttt taataatgac ttgattagct tttcctagat caccataaga
    13021 atttcccaat acttccttta aagcgtttgc aaatgttgca ttattgctat cttgagtttg
    13081 tccatataaa gcagtaataa aatccatact ttgattaatg cttgttagtt catcagctgt
    13141 taatattttt ccatctttat aaaatttact taagtcgcta atatcaacac tagaattaaa
    13201 tttcaagtca ttaaatatag aatttaaaac ttcatttgag atgttatctt tagcaataag
    13261 atcgctagtt tctttatagc ctattgtgtc tgttggatct cctcctggtc cagttaagcc
    13321 tttattagat cttatactca atattacaga gtcttctttt ttattgtatt tgatgcagga
    13381 ccacgaatga caaatgtatc attactatag acattaagat agacggtatt ggattgttct
    13441 tttttatttg taaaaatgaa tttaccataa tcagtgccac catatttcat atttgaaact
    13501 tgattgcctg ccatagcaac tctttctcct accgttatag tttctaaatt tataacattt
    13561 cctgcattgg atttaattac aggtgatatt gttttaggat ttcctttaaa tgctgaaagt
    13621 tttccatctt ttgtaaactc cttcatctcc ttaccaccta ttgatgaagc agacagaaca
    13681 atttttttcc acctttaccc actactatgc cattaggatt gattaaaaag atattattgc
    13741 ttccactatt gagtgttcca tctataatga gagcttttag aaccatagac aatatttaaa
    13801 taattttggt tagtttttcc ttgtccaaaa tttacagttt cattacttgc tatattaaaa
    13861 ccaccactaa cacttatact tccacttgtt ccatgagtga acttaccccc acttggtaaa
    13921 gcatagcttt gtgtaaaaag taaagaacct acaactaaag acaaagaaag tttatttaac
    13981 tttttcatga cttgctcctt tttgtaagat taagatttaa gaatcttttg tttatattta
    14041 taaaaataca aataaatcat tcctatctta aaaataggaa tgatttattt tatccttgca
    14101 taaatgtttt tgtcatcttg agatattctt gcttcataag aaagcttttg taggttcata
    14161 ttttctaatc tatctataga acttagttta aaatcttctt tgttttttgc attttttcaa
    14221 taaagctttg aagttcttct tgatttaaaa tattagagtt ttcatctata aaaccttgct
    14281 cactttataa gattaagatt tctttatttt taatataggg gtattactct ttgagggtgt
    14341 aaagagctaa tactccctag ctagaaatat taataggagc atcgtatgac ttcaaaaggg
    14401 gagttgtgtt gattttattg gatacaataa gataataatg ctcaaagtta ttaataattc
    14461 tagcttcaac tttagtattt aaaatcagtc tattgttttt acttaaactg atatctgaag
    14521 gagctgcagc attagaagca ctataattat cttcataatg caccaacgct cctgctaata
    14581 tatctatgaa agtgttttta aatatattta aattcccacc tatatataag gtattattat
    14641 aagatttagc ttcacttaaa cctgtaatgg ctgaaggagc tataaaaata gaattgttat
    14701 ttttgtactc atcaagatta agattgttta tgattaaggt attatcatgg gcattgtttg
    14761 aaagtccagc tataatactt aaaattcctt ctcttttatc tgaagctaca ccaaataaag
    14821 tatcattgat aatgatttta ttataagcag cttcattata agccataatc aaataagcat
    14881 tatcagctgc attagaagaa tagtttttta tatctatagt attatgattg gctttatcta
    14941 aagctcttat gatgatttta gaacctttat ctatattact tacatcggta atgctttgaa
    15001 cattgttata atttatagta ttataagagg cttctttagc ttctgttaat acagttaaat
    15061 ttctaaaaga agcaaagtct ttaatcacta cttcattgtt attagcacta ctaggataaa
    15121 agtcttggtt attaagaatg tttttcttag ctgtataaat gtatacaggt aaggttgaca
    15181 tagaattatt aatataaact ttattataat ccgcactgcc ttctaaggtt ctagcagcta
    15241 caatatttaa agcatcttta tagctttgag aaagatcggt tgtggtaaga tcgtttttaa
    15301 tgttaatggt attatgatta gctcctttag ttgcaaagcc accataaaaa gaatgttggt
    15361 tataacctaa gaagttatta gcgatttcta aaggatgttt taattctatg tttaaggtat
    15421 tataatttgc ttctccatta ttagaagctc ctgcatagaa gttaaacaaa gcttgagcaa
    15481 aaatgttctc attgttttta tcttttttta ggtttttaat atcttttaaa ttgatagtat
    15541 tatctaaggc ttgtccttgt tcggtttttc caccccaaaa atcagcaaat aaaacagaat
    15601 tataagctaa gggttgttta tcatggttca tatacatatc aagattaaaa ccatctatgt
    15661 ctaaaaggtt tttactggct tgaaagtttt tatctgttcc actatctata taacctgcgc
    15721 taatatgagc agcagctaaa ctagcataag ctttgcttgg accatggata atcatattag
    15781 catctttgat aaagatttta ttgtttttta cattaccttg ataagctaaa ccacctacaa
    15841 ggtgagtgat tctttcatca aaggtattat taccattttt atctttttta ggtaaggaag
    15901 taaaaaactc tacactgcta cctgcttcta tatttaaact attatttgta gaatctccat
    15961 aagtggctat agctccgatt aaataaggag caccatttaa ggctaaatca taagtgttct
    16021 caactcccat actaatatgg gcatcttttt gaagtatggt ttggttatag cttgcattac
    16081 cataatgagt aaaggtagaa ctcattaaga aattcatgcg ttgattgctt ttagaattac
    16141 tagggttttt tatatgagta tctttaggtt taagataaaa aactgaacta agttctcctt
    16201 gttctaatat aagtttatta taacttgcat cagcatgatc ggtttttgct gtgattaaaa
    16261 aaggaagcac tctaactgtt tttatactat gaccggctgt attaacacca tgccttgctt
    16321 taaaagaaag aacttcatct tctctcatat caggagtaag taaataatgt ttaaaattta
    16381 aatcgtttat atttgtaata tttggtttag gattgttata tattaaagta atattgttaa
    16441 tatattgttt agaactctta gcataataat ttataccttg gagtttttta taagtagaat
    16501 tggttttatc ataaagttcg ttatcattaa aataatgctc tggaatattg aaatttcgat
    16561 tgtctgtagt atttgcttga gtggctgcaa aagcgttgat gcttaagaag gtaacaatag
    16621 aaagtttaaa acaaaatttc tctatacccc ctccccgtga agttaaaaag ctttattaaa
    16681 ttaagattgg gcggaatttt ttaatataaa ctaaaaagcg atatcaaaga atttccgttg
    16741 tataatctaa tgttttttaa atgtaaaata ttttttaagg taaagcgatg aaaatgcgtg
    16801 tgtattatga agatactgat gcgggtggag tggtgtatca tagtaattat ttaaaatttt
    16861 gcgagagagc aagaagtgaa atttttttca ataaaaaagt agatattttt gatgcgtcta
    16921 agggacattt tttgcttgca aaagcaaatt gcaatttctt aaaacctgca aaacttggag
    16981 atatgataga gattaaaaca aaaattttag aagtcaaaaa tgcttctgtg gaaattttac
    17041 aagaaattta taaagatgaa attttgcttt ttaaaatgga attaacttta gcttttatta
    17101 aaaacgaaaa accagctaga atggatatgc agttaaaaaa gctctttgaa gaattatttt
    17161 aattcttcaa agcttgcttg tttgccttgc ataagacgca ctttgtaatc aacttgagaa
    17221 tttttgattt tctcatcaaa taaactttcg ctttttttat ttaagaattc ggtataaaag
    17281 taatcaactc ctatactagt agcataagca atccagttat aatctatact ttgattaaaa
    17341 atttcattaa gatagactag gttatcatcg tggttattga tagaattagc aatgataaaa
    17401 ttttctctat ctccttgttg tgttaaactt aaaaatgttg gattatagtt gatttgagtg
    17461 gataaaagca cataaggatg aatgttataa attcttagtt gagaacttgc tagagctgtt
    17521 ttgatcaatg gagtgttaaa aaatattgag gcattattaa ctccaccttg tgatcttaaa
    17581 agtctgctga aatcaagctt ctcgccttct atggtatata ttctagcatt attattttga
    17641 gcaagaattc ttgaatttag attgcttgat aaggcagagc catcgctaaa tattgcgata
    17701 ttagcatttg atttgcttaa aagtgtggca atttgagcat catagtcaat acttccaaaa
    17761 ataatatttt gatttgaaat ttgtatgttg tttttatgga tagtcggtat gaaaattttc
    17821 atatttcctg agtaattttt caactcatta gcacctttta gagtaaatcc agctatggca
    17881 tactgatatc cttgagcttg tgctgcatca agcgcggctc gaattttatt actatcttct
    17941 gtgccggtta aaaaaacttt tactttgatt tcagctcttt gtcttaaaag ataggctatg
    18001 cttgaattta ttatagtatt tgagtagctt tttatggttt tttctgggat aattatcgca
    18061 agtttaacag aagtaatttt ttgaacattt ttttcaaaat cagtaatgga atttaataat
    18121 tttgcataaa cattagataa aaattgatca ttttgatctg caaattcact taaaaaacta
    18181 agatacaatc ttgattctaa aagatcaaaa agacagtttg tgttgcattc ttgaacgctt
    18241 aatttaggat aaaaattttc aacaggtttt acatcgacta atttttgctc ttttgcatta
    18301 ag
//
LOCUS       DARBAR010000024        17571 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.024, whole genome shotgun sequence.
ACCESSION   DARBAR010000024 DARBAR010000000
VERSION     DARBAR010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17571
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.024"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..214)
                     /locus_tag="SB815_000594"
     CDS             complement(<1..214)
                     /locus_tag="SB815_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906356.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDF"
     gene            complement(216..2018)
                     /gene="uvrC"
                     /locus_tag="SB815_000595"
     CDS             complement(216..2018)
                     /gene="uvrC"
                     /locus_tag="SB815_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEG0906357.1"
                     /translation="MTKENLENELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKLISREKYLEILDEAIHALLNPSVLLKNLEKQMLVLAQ
                     NENYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFKNSVLSTLRFVVQNGKI
                     ISANSKITPIKNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKSYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGVNVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLSSGVMQK
                     LLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
     gene            complement(2011..2505)
                     /locus_tag="SB815_000596"
     CDS             complement(2011..2505)
                     /locus_tag="SB815_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906358.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAANKNKNDEKLSKNSYLELSKGEFKNCFKDKKLFKKFEDLRELIKKG
                     SNLD"
     gene            2644..4179
                     /gene="guaA"
                     /locus_tag="SB815_000597"
     CDS             2644..4179
                     /gene="guaA"
                     /locus_tag="SB815_000597"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEG0906359.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPVLGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEIKKDNALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESIWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQIIVVFVDNGLLRSGEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLVNVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRASLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEILENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            4265..5725
                     /locus_tag="SB815_000598"
     CDS             4265..5725
                     /locus_tag="SB815_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906360.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKLVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRKNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQERLAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            5965..7215
                     /gene="purD"
                     /locus_tag="SB815_000599"
     CDS             5965..7215
                     /gene="purD"
                     /locus_tag="SB815_000599"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEG0906361.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            7212..7664
                     /locus_tag="SB815_000600"
     CDS             7212..7664
                     /locus_tag="SB815_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG0906362.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            7654..9702
                     /locus_tag="SB815_000601"
     CDS             7654..9702
                     /locus_tag="SB815_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HEG0906363.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNNPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYVLPGAKSGKITQDYLEEYDKENEHTSLYAVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            9772..11931
                     /locus_tag="SB815_000602"
     CDS             9772..11931
                     /locus_tag="SB815_000602"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEG0906364.1"
                     /translation="MQYSIEINKNTEIFNIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEILNLEIAKDWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDSQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGITALQMDIKLGGIDQEILKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            11928..12410
                     /locus_tag="SB815_000603"
     CDS             11928..12410
                     /locus_tag="SB815_000603"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HEG0906365.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLSPIL
                     SQTKIQAIFTTGQSAYKFFIKFHPRLKAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(12449..13111)
                     /locus_tag="SB815_000604"
     CDS             complement(12449..13111)
                     /locus_tag="SB815_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEG0906366.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IN"
     gene            complement(13129..14313)
                     /locus_tag="SB815_000605"
     CDS             complement(13129..14313)
                     /locus_tag="SB815_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0906367.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISTVFDMVAFLIACSFVTIYFFIHERKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVVSNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGIMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            14367..14822
                     /locus_tag="SB815_000606"
     CDS             14367..14822
                     /locus_tag="SB815_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEG0906368.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            15074..16348
                     /gene="porA"
                     /locus_tag="SB815_000607"
     CDS             15074..16348
                     /gene="porA"
                     /locus_tag="SB815_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 major outer membrane porin protein PorA"
                     /protein_id="HEG0906369.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVNNSNLNNSKQDHKYRAQVNFSAAIADNFKAFVQFDYNAADGGYGANGIKN
                     DQKGLFVRQLYLTYTNEDVATSVIAGKQQLNLIWTDNAIDGLVGTGVKVVNNSIDGLT
                     LAAFAVDSFMAAEQGADLLGHSTTSTTQKAAPFKADSVGNLYGAAAVGSYDLAGGQFN
                     PQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELDDKTHANGNLFA
                     LKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDTG
                     RNIFGYVTGGYTFNETVRVGADFVYGGTKTEAANHLGGGKKLEAVARVDYKYSPKLNF
                     SAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(16463..17554)
                     /gene="dnaJ"
                     /locus_tag="SB815_000608"
     CDS             complement(16463..17554)
                     /gene="dnaJ"
                     /locus_tag="SB815_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEG0906370.1"
                     /translation="MTQNADKETIKKAYRKMALKYHPDRNQGDKEAEDKFKLVNEAYE
                     VLSNDEKRAIYDRYGKDALKGGGFGSSSSGFGGFEDLGDIFSSFFGEGFGSSRRRKSS
                     NDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGKLQTCPKCQGR
                     GQVGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELNIPEGVDTGMK
                     LRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQAILGESIKVPT
                     IRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRMGNQIVQISIKFPTSLNDEQKELLE
                     KLSESFGIKDGMHQEQKGLFEKITNWFKS"
BASE COUNT         6271 a         2950 c         2753 g         5597 t
ORIGIN      
        1 aaaaatcatt ttgcatgcaa aaaatttttt gatatatttt gtttatattt ctattttgcc
       61 taaaagcaaa aataaaaagt gttaaagata aaacaaaaat gctagaaaac atacctattt
      121 tcagttgttc agtaacacta tcaagctttg agatatcaat acttaaatac gctaaaatta
      181 gattaaaaat aaaaattatc cctgctaata tcaaatcaat tttcctttat cttttgcgcc
      241 gctttcctgc ctacaagcat tgtaagatct ttaaaatcag ccttatatat agattcaaaa
      301 tttccataat acgctaaaag tttttgcata acccctgaac taagtcctaa atttgcaagc
      361 ttagaacttt tcaagtcctg ttttttctta gtattttgat gaaagctaat agcaaaacgg
      421 tgtgcttcat ctcttaattt ctgtaagaat tgtagttttt tatcgttaat gcttagacta
      481 aattctcctt ttaaggaatg aattttatcc ttagcacccc ctttagctct atgtgctttt
      541 gcatcgattt tttcttttga aatagctaaa atatcgacat ttaccccact acttacaatg
      601 atttctttag ccaaatcaag caaagccttt cccccatcta taagccataa atcaggagga
      661 ggtattttat caaagtccaa agccctacgc gttaaaactt cacgcatttg atcatagtca
      721 tttttatgtt ttaaatgaaa tttacgatat tttgacttat cccaagaatt tattctataa
      781 gttaccatag ctccaacatt tgccacgcct tgcaaatgag aattatcaaa aatttctata
      841 tcatttggta aattttcaag ctcaaaataa gactttaatt ctttttgtat agtaaaatca
      901 tgattttttt gctctttttc tatatttaaa agggcatttt gaaaagccaa atcacaaatt
      961 cttctttttt ctcctatttt agggatttta atactgattt ttttatcaaa cctttggctt
     1021 aaaatttctt ctaaaagcac tctatcttca aattcttcat aaacataaat aacatttgca
     1081 agcaaaggaa tatccatgct aaaattttct aaaatcagtt gcttataaat ttcattttga
     1141 tcccattgta tatcattttt tataggagta atcttagaat ttgcactgat aatttttcca
     1201 ttttgcacca caaaacgcaa ggttgaaagc acggaatttt taaaagctaa agcaaatact
     1261 tcaaaatctt ctaattttgc aatatctatt tcaaccttaa cttccaaatc tttaatcatt
     1321 gcaatctgat ctcttacttt agctgcttct tcgtaatttt cattttgtgc taaaacaagc
     1381 atttgttttt ctaagttttt aagcaaaaca ctaggattta aaagtgcgtg tatagcctca
     1441 tctaaaattt caaggtattt ttccctgctg atgagtttat cacaaggcgc aagacaacga
     1501 gaaatttgat aaaaaataca aggggattta caacttgctt tttgctttaa aggatagtat
     1561 aaataaagcg catctaaaag ctctctagcg cctttaaaaa aagggccaaa atatttaatt
     1621 ttgctttttt ttactaattt tctagtgatc tcaaagcgtg gaaattcttc ttcaaaatcc
     1681 acataaatat aaggataagt tttatcatct cttagcaaaa tattatattt tggatgcagt
     1741 tgtttgataa aagaattttc taaaatcaaa gcatcagcct ctgaattagt agcaataaat
     1801 tccaaatgca ctgtttcttc aatcattttt tgaattctta aagaatttct tggatttgca
     1861 tgtaaatttg gagtaaaagc aaaataagat ctaacacgat ttttaagatt tttagccttg
     1921 cctacatata aaagctttcc ttcttgattg aagtattgat aaacgccagt actattagga
     1981 agagttttta actcattttc taaattctct ttagtcaaga ttagaacctt tttttataag
     2041 ctctcttaaa tcttcaaatt tcttaaataa ttttttatct ttaaagcaat ttttaaattc
     2101 acccttagaa agctccaaat aagaattttt agagagtttt tcatcatttt tgtttttatt
     2161 tgccgcataa gtgtattttt gagaaaagat ttttatatct tttatatcaa caaatccact
     2221 taaaggatat ttctgcccat atgcttttat gagaaattta atataaattt tgctatcatc
     2281 atgatttaat tcttgataag ctgctggatg taaggttatt atatttaaaa tatgattttt
     2341 tacataaatt ttagcaatca aacgttgctt agcaagcgga aaagaactta aaaaatcttt
     2401 gcaaaaaaat aaggttttta aaggcttata atgaggttta tccatcaatt cattaataac
     2461 agcactagca tttttagtca tcttaatatt atttcttttt cccataagat gattttagca
     2521 tttcttttct taattttctt ctgtgcttgc ggatataaag gcaaccctca atacacaagc
     2581 tatgaacaaa atggttcagt aaaaaccatt aaaaaatacg aacaattaca taggtggtaa
     2641 ataatgaaaa aagcagatat tttagtttta gactttggct ctcaatacac tcagcttata
     2701 gcaagacgct taagggaaca aggagtttat gcagaaattt taccttttaa tgtaagctta
     2761 gctgatatta aggcgaaaga accaaaaggt attattttaa gcggaggtcc agcaagtgta
     2821 tatgcaactg atgcgtattt ttgcgataaa ggtatatttg acttaaatct acctgttctt
     2881 ggaatttgtt atggtatgca gcttatggca catcattaca aagctacagt agcacctgca
     2941 ggacataaag aatacggcaa agcaaacata gaaattaaaa aagataacgc tttgtttaaa
     3001 aatcttccaa aaaaacaaac cgtttggatg agtcattctg ataaagtaga aaatttacct
     3061 caaggttttg aagttttagc cacaagtgaa aatagccctt tttgtgtttt tggaaacgaa
     3121 gataagaaat tctttgctct acaatttcac ccagaagtac aacacagcga atttggcaaa
     3181 aatatcttaa aaaattttgc taaatatgct tgcaattgtg aaagtatttg gaatatgggt
     3241 tcttttgcaa aaactcaagc agaaaaaatc cgtgaagaag taggcaatga taaagtgctt
     3301 tgtgctgtaa gtggcggagt agatagtagc gtagttgctg cacttttagc tagtgctata
     3361 aaagagcaaa ttatagtagt ttttgtagat aatggacttt taagaagtgg agaaaaagaa
     3421 caagttgaat ttatgtttaa aaacacttta ggcatcgatc tcatcagcat tgatgcaagt
     3481 gaaattttct taagtcgctt agttaatgtc acagatcctg aacaaaaaag aaaaatcata
     3541 ggaaatacct ttatagaagt ttttgaagaa gaagcaaaaa aacataaaga tgtaaaatat
     3601 cttgctcaag gcacacttta tactgatatc atagaaagtt ctgttgtagg tgcaagcaaa
     3661 accattaaaa gccatcataa tgtagggggc ttacctgaaa aaatgaatct taaactcata
     3721 gagcctttaa aagaaatttt taaagatgaa gtgcgtgcct taggacttga gcttggactt
     3781 agcaaagaag tagtttatcg tcatcctttc cctgggccag gtcttgctat acgcattatg
     3841 ggagaagtaa atcgcgctag cttagaacta ttacgcaagg ctgatgtaat tttacttgag
     3901 gaacttaaaa gtacaggttg gtatgataaa acttggcaag cattttgcgt acttttaaat
     3961 gttaaaagcg ttggagttat gggggataac cgcacttatg ataatgcagt ttgtatacgc
     4021 gttgtagatg caagtgatgg tatgacagct accttctcgc atttacctta cgaaatttta
     4081 gaaaacataa gtcgccgtat catcaatgaa gtagaaggta taaatcgcgt tgtttatgat
     4141 atctcaagca aaccacctgc aactatagaa tgggaataat ccattttttc tagctcttat
     4201 ttttaatata aaatttttat aaaaataagg ctagaattta tttaagaaat ttcaaggaag
     4261 aaatatgcat ggaaaaatag ctatttatat ggattctaca ggacgtggaa ccgttacaaa
     4321 ctcagcaaat accttttttg actttaatcg ccaaatttgg aatgataaaa aaagtatgcc
     4381 aagtgttggt atgcttgtgg aatttagaac tctttctagc gaaaaaaaag cagaagacgg
     4441 caaactcgtt caaacaagca aaaccataac aggtataaaa ccttcaaaat ttcaagaatt
     4501 caaagaaggg gattttatca ctgagcatga tttttggaaa actgataatg atgatgaatt
     4561 agaagacttg caaaactcaa gaagaagtgc ttatataaca gaactctata gaacaacaga
     4621 ctttgacact atagaaaaaa ttcctctttc ttttactata cctcaagcta tacaaaaata
     4681 ttttgcccat gaaattttat ccgtagaaac gcttcaagcc aatctacaag atgaaaagga
     4741 aattccttgt atacttgatt atcttatact taaaagattt ttatttaaag cttatgatac
     4801 tttaattttt atggataata gcatagacca aacccaattt agcgcattaa aaagcatcat
     4861 gatgcattta gagaattcgt ataagcaaat gatggctgat caaaaaccaa atatcactaa
     4921 aatttttaac gaaacttttt tatctttgca gtgtcattac caagctttag tagccaccat
     4981 agatacaaga aaaaatcgtc tagcctcact tgaagcacaa atgaaaactt tacaatctga
     5041 aataaatctt aaaagcaatg cgaccgatgc agaccctgaa aaacttaaag cacgacaaga
     5101 aagattggct aaactacaaa aagaagcaga atactacaga acaacactaa aaagacttga
     5161 tgctataagg gaagattttt ataagaaaaa ttacaatatt ttcgaaaatg cttttaaact
     5221 ttcacgagaa aaactcttta aaaaaattgt cacaggttta aatctatgtg caaccataat
     5281 ggatgtcaaa atttggcact tatctttaaa atcatcaggg gttaaaaatt cttattttac
     5341 tatgagtaat atagaaaatt ctttctgttc tctttctttt gcagaacatt acttaagtcg
     5401 cttaaataaa tccgctctaa atccttttga tcaaaaactt ttagtgtata ttcaaaaaat
     5461 cacaaaagaa caaagaaaaa aatttttagt tgtcacatcg gatttagatt tattatgcaa
     5521 attaaaaatt gaaaactttt cacaaaatcc gtattattta gtaaaatacg cacctaaaaa
     5581 agtaaattat caatctttaa tgcgtgataa cacctttgat atagtctata ttgatgaaaa
     5641 acatgtttgg gaaaatgttg ccgatattat tttacaagga aagcattttg acaaatcagg
     5701 aaaaaccaaa tttaaactga tttaagacat agaaatttaa gctaaattaa gttataattt
     5761 ccttgcctaa acagtttgta gtatttaaag tgatccaaca catttttatt aactgcgatt
     5821 gtgtgattta ccgtgttctg tggcatcgtt tgagctttga aaaaagtgag aagttgcagc
     5881 ctttaaaaat tacctagcgg ttttctttga ctttttgggg tcaatctttg ttaaacggct
     5941 gtttgggttt aaaaggagat ataaatgaaa ataatgattt tgggtagtgg tgcaagagaa
     6001 tattctattg ctttagcctt aagaagagta gacaaaaatt tagagtttta ttttgctcct
     6061 ggaaatggcg ctaccgaaag tcttggaaca aatttaaacc taaaagatcc agtagtttta
     6121 gcaacctatg caaaagaaaa aggttttgat ctttgtatag taggaagtga aagtttttta
     6181 gctgaagggg ttgtagatat ttttaaacaa caaggacttg ctatttttgg gccaagtaaa
     6241 gctgctgcaa tgcttgaaac ctcaaaatct tttatgaaaa gctttcttaa aaaataccgt
     6301 atcaaaacag ccaaattttt aaacacaaat gacattgaaa aagcaaaaaa ttttatatat
     6361 agtttaaccc ctcctatagt agtaaaagcc gatggacttt gcgcaggaaa aggtgttatc
     6421 atagctaaaa ctcatgaaga agccatagaa gaaacagcta aaatgctgag cggagaaagc
     6481 tttggagatg ctggaaaact cgttgtaatt gaagaatttt tagatggtta tgaattaagc
     6541 atttttgcag tatgtgatgg caatgatttt gttttacttc ctgcagcaca agatcacaaa
     6601 aaattactcg ataatgatca agggccaaat actggtggaa tgggtgctta cgctcctagc
     6661 tctttggcga atgaaagctt gcttagaaaa gttcaaaaag atattatttt accaacttta
     6721 gcaggtatga aaaaagaagg agcggaattt tgtggtgttt tatttatagg tgctatgatc
     6781 gttggaaata aaccttacgt attagaattt aacgttcgct ttggcgatcc tgaatgtgaa
     6841 gttttaatgc ctttaatcga agatccttta gagcttattt tagctgctac tcaaagacgc
     6901 ttaagacact caaaaatcaa aatcaaaaaa gaatttgcag taggggttgt atgcgcgagt
     6961 gaaaactatc cttacaaaag ttcaccaaaa agtgaaatta ccgtaaataa cattcctgaa
     7021 aactctcata tttcttatgc tggagtaagc ctagaagatg gcaaattaat ggctgatggt
     7081 ggaagagttt tagtttgcgt tggcacagga aaaagtatag aagaagcgca aaaaaatgct
     7141 tataaacttt gtgataatgt aaatttcaaa ggaaaacaat acagaaaaga catcgctcat
     7201 caggttctga aatgaaagaa aatttacaag accgcttaga gcgtgaaaat ctaaaaatag
     7261 caagttttgg aaaaagagtt ctagcttttt taatcgatga tatggttatt tctttgattg
     7321 tgtttatcat tttttatgat cgtctaatcc aagcaaaaga tttatttgaa acaactcaaa
     7381 ttgtaggaaa tttttacctt ggcttcatct tgcttcattt tagttatcaa gcaattttta
     7441 cttatcttta tggggcaagt ttgggaaaaa tattatgcaa aattatcatc ttggatgaaa
     7501 atcttcttga taaacccaat ctcattcaaa gttgcatcag gtctgccgta agacaagtta
     7561 gtgctatggc gtttatgctt ggatttgctt gggctttaag caatgattta cgcaaagctt
     7621 gggaggatta tctagcaagg acaatagtag tcgatgtggc gtaaattttc cctattgcta
     7681 ggaactagca tagctttaaa tgcagcacaa gttgatattt acgctcttga tgcaaaaaaa
     7741 gaaggtgata ttcttactgc gaacaatgat gttattattt tttctgattt ttatttcatc
     7801 actgccaata aagcaattta caatgaaaaa accggagatg ttgagctttt tggcgatgtt
     7861 aatatcctaa ggggacaaaa cgaaagatca cattctgatt atgctaaaat caacctaaat
     7921 tccaatcaag ccgattttag taattttttc ttttccaata acaatcttga agtatggttt
     7981 caaagcaaaa caagccatct aaatgataaa gtctttgaaa gcaaagtttc agcagtttca
     8041 agctgcaatg ttgaagatcc tgattgggaa attcgttttt caaaaggctg gcttaaccgg
     8101 gaaaccaatt ttgttcatct ttacaatgca agattatatg ttaaaaatac cccagttttt
     8161 tatctacctt attttggatt tagcgctgat actcatagac aaagcgggct tttaatccca
     8221 aaaatcgttt taaaaagtag cgaaggctta tactatgaac aacctattta tatagccact
     8281 caagaaaatt gggatttaga acttgatcca caaattcgaa caaaccgtgg ttttggactt
     8341 tattctactt taagatttct tgattctcca tattcaacag gagaattaaa ttttggtgct
     8401 tttagggaaa atagctccta ttttcacgat gaaaatttga aaaatcaaac ccactatgga
     8461 atagaactaa aatactcaag agatgattta atcaaatctt tactcagtga taattttcaa
     8521 gaaggtctat ggatagatgc aacctatctc aacgatgtgg attatttaaa tttaggaagt
     8581 agggattatc gagatcttaa ctcgcttgta acctccaaaa tcaattattt tttagctgat
     8641 gaaaacaatt tttacggagc ttatgcaaga tattatatcg acacatctaa acttagcaac
     8701 aatacaacct tacaagaata tccaagcttt caatatcata gatttttaaa taaccttttt
     8761 gatgaacgct tgcgttattc atttgatgct tcatttcata atttttaccg acctgctggt
     8821 tcttatgcaa atgagctaaa tttagacttg cctatctcgt atcacaacgc tttttttgga
     8881 gactttttac actttacttt tacagaaaga ttttatgctt cttttgtaaa ttatagcaac
     8941 aatcccgaaa gaaaccatga gcattatttc agaaacactc atgattttaa tctctacacc
     9001 gatctttcaa aagcttatga aaatttcttt catactttaa atttaggggt gaattacgtt
     9061 ttgccaggag caaaatcagg taaaatcacg caagattatc ttgaagaata cgacaaagaa
     9121 aacgagcata caagtcttta tgctgtgcaa tatttctata acaacgaagg acaaaaaaaa
     9181 ctcaaacaca gaatttcgct tgactatctc aataaacaaa atgaattcta tgaacttgaa
     9241 aatcttttaa cttattattt taatgaaaac atcaatctca acagcgaagt gctttactct
     9301 tatgaacaaa gtcgctttac caatgtcatc agccaaatag aagtcaatac aaattcaaaa
     9361 tttaattgga tgttttctca tgcttatcaa aacgatgagt atggaaaata tagctttatt
     9421 ggtacaagag caaattatat tgccacacct aattacaatt tatttggtgg aatttggttt
     9481 gatactcaaa gagctcatgc aaacatgtgg gaacttggct atacctacca aagaaaatgt
     9541 tggaactatt ctttaatgta tagagaaaga atcgatccac aacttacaag tggtggtatc
     9601 acagctaaaa atcaaagcgg agtttatttt attttcaact tctatccttt aggaggagta
     9661 aaatacgatt tctctttagc agaaagtgaa aacaaaattt aaaaaggatg aaatttgcta
     9721 aatattttaa aaaattttac gaatttatta tctggtaaaa aaggaaaaat aatgcaatac
     9781 agcatagaaa ttaacaaaaa tacagaaata tttaatatag acaaagtcgc caaacaagct
     9841 gccggtgctg ttttaatgag acaaggcaaa agcgttgttc tagctacagt tgcaagagaa
     9901 gaaaaacaag ttgaagaaga ttttttacct ctaaccgtcc aatacatcga aaaagcttat
     9961 gccgcaggaa aaatccctgg tggttatgtc aaaagagaaa ccaagccaag cgatgcagaa
    10021 accttaacag cacgcattat tgatagaagc ttacgccctc tttttccaaa aggctatgct
    10081 tatccgactc aaatcgttgt gatggttctc tcagctgatc ctaaagtaga tttgcaagta
    10141 atgagcttaa atgccgcaag cgtggcactt tatcttagtg atatacctat gaaagctcca
    10201 gtatgtggtg tgcgtatagg aaagatagat ggaaatttca tactcaatcc aaacaatgaa
    10261 gagcttcaaa atagcaccct agatctctat gtagcaggtg taaaagatga gcttttgatg
    10321 atagaaatga gagccttacc tgatcaaaaa gaaaatgaaa tctttatcga agctccttat
    10381 gctgatgttt taactcaaac cacttcacaa aatatgaatg aacttagcga agatgaaatt
    10441 ttagaagctc taaatttagc tcaaaaagct atattaaatg gttcaaatgc ttatgaagaa
    10501 gcctttagca aacacaaaaa aaattctcaa atcgaactaa aaaatgagat tgaacatcct
    10561 gaaattttag cttttataga aaataatttc caaaaacaaa tcaaagaagc catcaatcaa
    10621 atggcaaaaa gcgaaagagc aagcgaacta aataaaatcg ctaaagaaat tttaaatctt
    10681 gaaattgcta aagactggag cgaagaaagt gtcttaaata ccttagctaa agtcaaacgc
    10741 aaacttattc gtgagcaaat tttaaatgaa ggcaaaagag ctgatggtag aagtttaaac
    10801 gaggttcgtc ctattagtat agaaaccaac atcttaccaa acgctcatgg ttcttgtctt
    10861 ttcactcgtg gacaaactca agccctagtg gttgcaacct taggcggaga aaacgattct
    10921 caaatgatag acttgcttac agaaaaaaat cctataagcg aacgctttat ggtaaattat
    10981 aattttccag gtttttcagt aggcgaagca agtcctatca aagctccagg aagaagagaa
    11041 ctaggacatg gaaatttagc caaaagagca ctttatccaa gtgtggatga aaactatcct
    11101 tatgtaatcc gcttagttag tgaaatttta gaaagcaatg gctcaagttc catggcaacg
    11161 gtttgtggcg gatctttagc cttaaaagca gcaggagtgc caagcttaaa acttgttgca
    11221 ggagtagcca tggggcttat ctttgaagat aacaagtatg ctgttttaac agatatcatg
    11281 ggacttgaag atcatgatgg ggatatggac tttaaagtag caggaagcaa agacggcatt
    11341 acggctcttc aaatggatat aaaactaggt ggaatcgatc aagaaatact aaaacaagct
    11401 ttataccaag ccaaagaagg aagaattcac attctaaata tcatggaaga agccgccaaa
    11461 gaaatcatag tcaatgaaga agttttacct aaacttgagc tttttagcgt tgatccttca
    11521 aaaatcgttg atatcatagg acaagccgga aaaaccatca aagaaatcgt agaaaaattt
    11581 ggcgtttcta tagacttaga tcgcgaaaaa ggtgaagtaa aaatagcagg tagtcaaaac
    11641 gaacaaatca aagccgcaaa agactacatc ataaacatca caagctctca aaaaggaact
    11701 aaaaaaggct ctaaagacaa agatatatca ggctttgaac ttgggcaaga atttcaaggt
    11761 attgttaaaa aaatcgctcc ttttggagcc tttgtggaac ttaaaaatgg tgttgatggt
    11821 ttattgcata gttcaaaaag caagcatctt aatttaagcg aaaaccaaag cttaaaagtt
    11881 aaaatcagcg aaattaaaaa cggaaaaatt tctgtggatt tgtgtgagtg agtgaatttc
    11941 taactcatcc ttttgagcct ttttttgaca aagattctaa aatcttaatt ttaggatctt
    12001 ttccttcggt aaaatcaaga caagatggct tttattatca acacccaaga aatcgttttt
    12061 ggcctatact agaaacactt tttgatgtaa gattagaaaa tatcacagaa caacaagcct
    12121 ttttaagaaa aaaacatatc gctctttggg atgtacttca aagttgcaag ataaaaaatt
    12181 cagatgataa aactataagt tatgcaaaag ccaatgattt aagcccgatc ctttctcaaa
    12241 ccaaaatcca agccattttt actactggac aaagtgctta taaatttttt attaaattcc
    12301 accctcgctt aaaagccata gccctaccct caacttctcc tgcaaattta aatttttctt
    12361 ttgaacagct tttacaaaac tatgaaataa tcaaaaaatt tacaaaataa caaactaagc
    12421 attaccccca agtaaaacaa gaaaaaagct agttaatatc tagcttttgc gtgttatcct
    12481 tgaattcaaa ttccactctc ttagctccaa aacctttagc aatagcttct aaagtatcct
    12541 tagcactttt atgaattttg ctttctaaat tttggataag atttaaagac aagtctttaa
    12601 cctcatcttt ggcttctttt atgagtttgt ttttatcact ttcgctaaaa ctaatccccg
    12661 tactattgat agaatcaggc agtaaaaaag gtaaaaattt agcatttttt tcatcataaa
    12721 atttcatatc tatgatgctg tgtttgtatc tacactctgg catgatgatc ttataagcat
    12781 cgtcccctaa aggcaaaata tcaaagtttt tatcccttaa atcatacaag aaagtgatct
    12841 caaattcaaa aatcaaagca atctgtcttt cactcaaaga ccatcctaaa agatttttcc
    12901 aaattccatt aaaagcgcta tcttttttag taacaatctc tttactaaaa acttgaaaaa
    12961 cacttaattc tcctatggat ttaagctgca tgatatcgct aaaactttgc gtgctttttt
    13021 cttctatttt agggctttta tactgcctaa aaagcactac aaacaaaagt acaagtaaaa
    13081 tcatcactaa aacaaataaa atcatttcca ttttaaacct ttctaaattt ataaaccttg
    13141 atttgaaaag atatattttt tctcaaacgc taagaaaata aaagcattaa tgataaaaat
    13201 caaacacaca aaagtaaaaa caaattccac gctaaaatgt gaagccataa tccctccgcc
    13261 aaaagctcca caaaaatttc ccaaaaattg acaagtttga ttaaaaccaa aaatcacact
    13321 taaattttta gcactcacac tttttttaag caaggcattc acacaaggca aaagccctcc
    13381 aagtcctaca cctataagta aacgcacgaa aataagcgta taaacattac ttactacagc
    13441 ctgcaaataa aagcaaattc cacaaaatat caaagctcca aaaataatct tactaggccc
    13501 tatcttatcg gcgatttttc caagttttgg tgcgaaaaaa agattgctaa tcccacttgc
    13561 agccactact atacccgccc aaagagccaa atttccacct tgatgaattt gctcaacata
    13621 gatacttaaa atcggcatca ctccaaaagt accaaattgt atcacaaaag tagtgataaa
    13681 aagaacgata ataagggttt tgttttcttt cactttttga gtatttttct tcgcctcttt
    13741 ttgaattttt ctctcatgga tgaaaaaata aatcgtcaca aaagaacaag cgatcaaaaa
    13801 agccaccata tcaaaaaccg tactaatact aaaaaattca gccacaaagc caccaaacaa
    13861 aggcccaagc aaacttccac ttatagaagc cgtagaaaga gttcctaaag cataagccac
    13921 tttttcttta ggtgctatca cagcgataaa cacaacagca gcagaagtaa aacctgaaat
    13981 tatccctgtt aaaccccgca caaaaactac ttctaaagca ctatgagcaa agctaagcca
    14041 taaggttaaa accgacatcc caaaacttgc acgaagaagc atatttttat aaccatactt
    14101 tgcacccaaa aaagcccaca aaggtgaaaa aacagccata aaaagtggag tgatcccaaa
    14161 agcaagccct gagtaaaacg ctatttcact cgtatcaaca tgtcctagtt ctttgatata
    14221 aaaaggcaaa atcggagcga tttgactaag ccccatactt gtggtaaaaa caccaaacca
    14281 acacacaagc aaagttctat tgaaattttc catggattta ttgtatgata ttttttataa
    14341 tttttaatta aaactcaagg ataaaaatga aaaaaatact ctttatatgc ttaggcaata
    14401 tatgccgttc gcctatggca gaatttatca tgaaagatct tgtcaaaaaa gcaaatttag
    14461 aaaaagaatt ttttataagc agtgctggaa cttcaggaga acacgatgga gaaggtatgc
    14521 actatggcac caaaaacaaa cttgctcaac ttaacataga acacaaaaac ttcacaagca
    14581 aaaaactcac tcaaaagctt tgcgatgaaa gcgatttttt aatcaccatg gacaattcta
    14641 acttcaaaaa tgttttaaaa aacttcacca acacccaaaa caaagtttta aaaatcactg
    14701 attttagtcc tagtctaaac tacgatgaag tccctgatcc ttggtatagc gggaattttg
    14761 atgaaactta taaaatttta tccctagctt gtaaaaattt acttgttttt ttatcaaaat
    14821 aatttaaaac aactatatat tacttctcgt ttacttttta ggcttatact tctaaacgaa
    14881 ccgaaaaaca ttcataagaa aaactcctta aaattacacg cctagcttaa atccctttag
    14941 ctaggctttt ctttagatgt ttttatcctt cggatttaaa atttttacta ttttaagtgc
    15001 ttcttaagaa aaaactccaa atttatgtgc tacaattacg atgttttatt aatttttgac
    15061 aaggagaatt ctcatgaaac tagttaaact tagtttagtt gcagctcttg ctgcaggtgc
    15121 tttttcagca gctaacgcta ctccacttga agaagcgatc aaagatgttg atgtatcagg
    15181 tgtattaaga tacagatacg atacaggtaa ttttgataaa aatttcgtta acaactcaaa
    15241 tttaaacaac agcaaacaag atcacaaata tagagcacaa gttaacttca gtgctgctat
    15301 agctgataac ttcaaagctt ttgttcaatt tgactataat gctgctgatg gtggttatgg
    15361 tgctaatgga ataaaaaatg atcaaaaagg actttttgtt cgtcaattat acttaactta
    15421 tacaaatgaa gatgttgcta caagtgtaat cgctggtaaa caacaattaa accttatctg
    15481 gacggataac gctattgatg gtttagttgg cacaggtgtt aaagtagtaa ataacagcat
    15541 cgatggttta actctagctg cttttgctgt agatagcttc atggctgcag agcaaggtgc
    15601 agatttatta gggcatagta ctacatctac aacacagaaa gcagctcctt ttaaagcgga
    15661 ttcagtagga aatctttacg gtgctgctgc tgtaggttct tatgatcttg ctggtggaca
    15721 attcaaccca caattatggt tagcttattg ggatcaagta gcattcttct atgctgtaga
    15781 tgcagcttat agtacaacta tctttgatgg aatcaactgg acacttgaag gtgcttactt
    15841 aggaaatagc cttgatagcg aacttgatga taaaacacac gctaatggca atttatttgc
    15901 tttaaaaggt agcattgaag taaatggttg ggatgctagc cttggtggtt tatactacgg
    15961 tgataaagaa aaagcttcta cagttgtaat cgaagatcaa ggtaatcttg gttctttact
    16021 tgcaggtgag gaaattttct atactactgg ttcaagacta aatggtgata ctggtagaaa
    16081 tatcttcggt tatgtaactg gtggatatac tttcaacgaa acagttcgcg ttggtgctga
    16141 cttcgtatat ggtggaacaa aaacagaagc tgctaatcat ttaggtggtg gtaaaaaact
    16201 tgaagctgtt gcaagagtag attacaaata ctctccaaaa cttaacttct cagcattcta
    16261 ttcttatgtg aacctagatc aaggtgtaaa cactaatgaa agtgctgatc atagcactgt
    16321 aagacttcaa gctctttaca aattctaaga agctttcaag tctaacttca aggcggggtt
    16381 ttgctccgcc tttttttatg cctgattttt aaaacttaaa tttatataaa aaattttccc
    16441 aagctaaaac gctttaggaa aattaagact taaaccaatt agtgattttt tcaaaaagcc
    16501 ctttttgctc ttgatgcata ccatctttga tgccaaaact ttcacttagt ttttctaaaa
    16561 gttctttttg ttcatcgttt aaagaagttg ggaatttgat agaaatttga acgatttgat
    16621 ttcccatgcg agaactatga acatctttta ccccttcttt ttcaagaaca aatctttgtc
    16681 catctttagc accctttggt aaatttaagg tcgcttcacc gcgtatggtg ggtactttta
    16741 tactctctcc taagatagct tgagtaaaaa acactggaaa ttctatatat atatcatcat
    16801 catctctgat aaaagtatca tcttcagcgg cgatgatctt aacatacata tcccctctag
    16861 taccattttt taagatatta cctttagcat tgacacgaag cttcatacct gtatctacac
    16921 cttctgggat attaagctcg acactatctt tgctttcatt ataacccaaa cctttacaat
    16981 cactacattt ttcactagct ttttctccaa ttccttgaca atcagggcaa gtttgtgcaa
    17041 aagtgataaa accttgagaa accccaacct gtcctctacc ttgacacttt ggacaagttt
    17101 gaagctttcc atctttagcc cctgttccat tacaagtttt acaagagcat ttataagtaa
    17161 agtctatatt tttcttacaa ccaaaaaccg cttctttaaa acttaatttt aaattaacga
    17221 taaaatctga agggattttc tcatcatttg aactttttct acgacgcgat gagccaaagc
    17281 cttctccaaa aaaactagaa aatatatctc ctaaatcctc aaaaccacca aaacctgagc
    17341 tactagaacc aaatccaccg ccttttaaag catcttttcc gtatctatca taaatagctc
    17401 gcttttcatc attgcttaaa acttcatagg cttcattaac aagcttgaat ttatcttctg
    17461 cttctttatc accttggttt ctatcaggat gatattttaa agccattttt ctataggctt
    17521 tttttatggt ttctttatca gcattttgcg tgatttcaag aatttcataa t
//
LOCUS       DARBAR010000025        17501 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.025, whole genome shotgun sequence.
ACCESSION   DARBAR010000025 DARBAR010000000
VERSION     DARBAR010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17501
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.025"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            125..1906
                     /locus_tag="SB815_000609"
     CDS             125..1906
                     /locus_tag="SB815_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HEG0906371.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAAMLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDDNDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSLDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNMDEANRFGWIVEINPFDAQ
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKI
                     LDEGILYVGQFNGNVGDFKGQGKWIALEYGKNSLNEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYESMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
     gene            complement(1944..2882)
                     /gene="trxB"
                     /locus_tag="SB815_000610"
     CDS             complement(1944..2882)
                     /gene="trxB"
                     /locus_tag="SB815_000610"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEG0906372.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(3016..3330)
                     /gene="trxA"
                     /locus_tag="SB815_000611"
     CDS             complement(3016..3330)
                     /gene="trxA"
                     /locus_tag="SB815_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEG0906373.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELSN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            complement(3387..3725)
                     /locus_tag="SB815_000612"
     CDS             complement(3387..3725)
                     /locus_tag="SB815_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HEG0906374.1"
                     /translation="MGVKAYLDGILGEDKACKFLKKQGFEILKRNFHSKFGEIDIIAK
                     KDEILHFIEVKFTQNDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLICIKND
                     VIQFCENISF"
     gene            complement(3725..4972)
                     /locus_tag="SB815_000613"
     CDS             complement(3725..4972)
                     /locus_tag="SB815_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEG0906375.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVAEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFKQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYKLLSKDEIYT
                     KYYLRVKVEDKIGILSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            complement(4976..6178)
                     /locus_tag="SB815_000614"
     CDS             complement(4976..6178)
                     /locus_tag="SB815_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HEG0906376.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPN
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPCPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQAAR
                     NIKKYLKE"
     gene            complement(6190..6996)
                     /locus_tag="SB815_000615"
     CDS             complement(6190..6996)
                     /locus_tag="SB815_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906377.1"
                     /translation="MVKKIIILTFWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLRLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYINNIKRIGVYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            complement(6990..7928)
                     /locus_tag="SB815_000616"
     CDS             complement(6990..7928)
                     /locus_tag="SB815_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906378.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSFNTWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLGGNNVVVIDNNK
                     AQETNRTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTPKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPAGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            complement(7921..8604)
                     /gene="rlmB"
                     /locus_tag="SB815_000617"
     CDS             complement(7921..8604)
                     /gene="rlmB"
                     /locus_tag="SB815_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEG0906379.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKISNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            complement(8618..9442)
                     /gene="rsmI"
                     /locus_tag="SB815_000618"
     CDS             complement(8618..9442)
                     /gene="rsmI"
                     /locus_tag="SB815_000618"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEG0906380.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDNQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            complement(9445..9645)
                     /gene="rpmE"
                     /locus_tag="SB815_000619"
     CDS             complement(9445..9645)
                     /gene="rpmE"
                     /locus_tag="SB815_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HEG0906381.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(9724..10380)
                     /locus_tag="SB815_000620"
     CDS             complement(9724..10380)
                     /locus_tag="SB815_000620"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEG0906382.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            complement(10382..10789)
                     /locus_tag="SB815_000621"
     CDS             complement(10382..10789)
                     /locus_tag="SB815_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906383.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(10789..11214)
                     /locus_tag="SB815_000622"
     CDS             complement(10789..11214)
                     /locus_tag="SB815_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG0906384.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSNDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(11214..11795)
                     /locus_tag="SB815_000623"
     CDS             complement(11214..11795)
                     /locus_tag="SB815_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEG0906385.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(11792..12535)
                     /locus_tag="SB815_000624"
     CDS             complement(11792..12535)
                     /locus_tag="SB815_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEG0906386.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENP
                     EFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(12538..13500)
                     /gene="moaA"
                     /locus_tag="SB815_000625"
     CDS             complement(12538..13500)
                     /gene="moaA"
                     /locus_tag="SB815_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEG0906387.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(13513..14028)
                     /locus_tag="SB815_000626"
     CDS             complement(13513..14028)
                     /locus_tag="SB815_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906388.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(14025..14522)
                     /locus_tag="SB815_000627"
     CDS             complement(14025..14522)
                     /locus_tag="SB815_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906389.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(14513..15397)
                     /locus_tag="SB815_000628"
     CDS             complement(14513..15397)
                     /locus_tag="SB815_000628"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HEG0906390.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISSF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            15468..16337
                     /gene="miaA"
                     /locus_tag="SB815_000629"
     CDS             15468..16337
                     /gene="miaA"
                     /locus_tag="SB815_000629"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEG0906391.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIKTRTKEMLDNGLLDEAKILFSKFD
                     HKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALATLRMKFSIEK"
     gene            complement(16323..16886)
                     /locus_tag="SB815_000630"
     CDS             complement(16323..16886)
                     /locus_tag="SB815_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HEG0906392.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNVNLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
     gene            17034..17108
                     /locus_tag="SB815_000631"
     tRNA            17034..17108
                     /locus_tag="SB815_000631"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17067..17069,aa:Glu,seq:ttc)
     gene            complement(17244..17411)
                     /locus_tag="SB815_000632"
     CDS             complement(17244..17411)
                     /locus_tag="SB815_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906393.1"
                     /translation="MKKVVLISALLGAFAANVFAANTPSDVNQTHTKAKADKKHEAKT
                     HKKTKEQTPAQ"
BASE COUNT         5992 a         2776 c         2308 g         6425 t
ORIGIN      
        1 atacctagtg aaaaactagg tataaatttt ttcttcaatt taaatttttc atcaaagttt
       61 ctaaaaagtt tccaaatatt tttatacttc cattgtttta aatttcaata tggggtaaaa
      121 acaaatggaa agaagattgt ttttaaaagg ttcagcttta ggttctatgg tggctttttt
      181 tgcaagttca aatttaagtg ctgctatgct taaggataag gatttgctag gttttaaagc
      241 tgttagtgca agcacacaag ataaagttat agtaccacaa ggttatgaag caaaggtttt
      301 aatttcttgg ggtgatccac tttttagtaa agcaaaacct tatgatgaaa ataaaatcat
      361 cgacatgaat gcagttaaaa atgctcattt ggtttttgga gatgacaatg atggtatgag
      421 tttttttcca ctttcaaaaa acagaggaat tttagccgtt aataatgaat atataaatcc
      481 tgaaatcatg tttaatcatc atggtaaaaa tttaagcaaa gaagatattt tatatgagca
      541 agccagtgtg ggtgtgagta tcttagaaat cgaaaaaaaa ggtgatgatt ggactgtggt
      601 tttagactct aagtataacc gcagaatcga tgcaaacact aaaatgcaag taagtggagc
      661 agctaaaaaa gaagttttaa aaaatgaaaa atttgttcat ggaacttttg caaattgtgc
      721 aaatggacaa acaccttggg gaacttatat cacctgtgaa gaaaattttg atgatttttt
      781 tggaagttta gatgaaaatc tagaatttaa tgactctctt aaacgctatg gatttaacaa
      841 aactagtctt tatggatggg aaaaatttga tgaaagattt gatttagcta aaaatatgga
      901 tgaagccaat cgttttggtt ggatagtgga aatcaatcct tttgatgcac aaagcacacc
      961 tgttaaaaga acttctttag ggcgttttaa acatgaaaat gcagaaatta tcgtagaaaa
     1021 agatggttct gttatagttt atatgggtga tgatgagatg aatgaattta tttataaatt
     1081 tgttagcaaa cataaataca aaaaaggtgc tgatacaagt aaaattttag atgaaggtat
     1141 tttgtatgta ggacagttta acggcaatgt gggagatttt aaaggacagg gaaaatggat
     1201 agctttagaa tatggcaaaa acagcttaaa tgaaaaaaat ggttttaagt ctcaagctca
     1261 agtactcatc aatacgcgtc ttgctgcaag tattgtaggt gcaactccta tggatagatg
     1321 tgaatggata gcaagccata aacaaagtgg ttctaaagaa gtatttgcaa cactaacgaa
     1381 caacaaaaat cgccaagaac ctaatgcagc aaatccaagg actaaaaatg tttatggaca
     1441 aattttaaaa tggatgccaa aaaattctca taaagacgat gattttactt gggaaatttt
     1501 tgctcttgct ggaaatcctg ataaccaaca aggcttatat aaaggctcaa ataatattac
     1561 aagtgaaaat aaatttaatt ctcctgatgg acttaaattt gatagagatg gaagactttg
     1621 gatacaaaca gatggatctt attctaataa agatgaatac gaaagtatgg gaaataactg
     1681 catgctagca gcaaatccaa aaacagggga aattagacgc tttttaacag ggcctattgc
     1741 ttgtgaatta acagggattg cttttagtga ggattatact acaatgtttg taggcataca
     1801 acatccagga gaaggtttga aaggtagtac ttttccttat ggaaaaacac caagatcaag
     1861 tgtaatgatg ataagaaaac ttgatggtgg agtgatagga agctaaataa aaataaagtt
     1921 gcttttagca actttataaa atcttaatgc aagctttcta tataagccat agcacttaat
     1981 gcagctacag ctccatcacc tgcagcacaa ataacttgct taggcgcatc ttttctaagg
     2041 tcccctgcgg caaaaagtcc agcaacgcta gtttgcattt taagatcaac acttacttgc
     2101 ccaccttctt ccatattgca taaaaactta ctatcgtctt gttttaaaat ttcatttctt
     2161 acgttaagac caacaaaagt aaaaattcct ggaacattta aatctctaat actaccatct
     2221 tttaatttta cttttactcc agcaacaccc attttatcgc catatacttc atctacactt
     2281 gcgctagtaa tgagttctat tttttcgttt ttcttaactt tttctactgt agatggagct
     2341 gctctaaact catctctgcg gtggataaga taaatcttag aacaaatatt tgctagatat
     2401 aaagcttctt ctaaagccgt atctccacca cctaaaactg caacttcttt atttttataa
     2461 aaaaatccat cacaagttgc acaagtgctt acaccttttc caaaaaattc atcttcgccc
     2521 ttaaaacctg ctttttttgg agctgagcct gtacaaacta tcacagcttt agcaagttct
     2581 gttttaccac cttctaattt gatggtaaaa cttccatcac tattttttaa aatttgttct
     2641 actccaacca tttcatgttt taaaccaaaa cgcatacatt gttcactcca aggagccata
     2701 aaagaaattc catccataac ttgggctaca cctggataat tttctatctc agaacttgag
     2761 gtaatttgtc caccaggcat acctttttca aacattacta catttttaag gccacctcta
     2821 gttgcataaa gtccggcact aagtccagca ggacctccac ctatgattgc tacatctaac
     2881 atttatattt cctttatatt gaattttatt attaataatg atataaaaat tattcttaat
     2941 agtagttaat aaaaattatt atttagtata aatttgaaat ttttaagaag aaggctagtt
     3001 atactagcct ttagtttata gtaaagagtt taatttatcg ctaattgctt gtttagattg
     3061 tgcaccaacg agttgatcta caacttcacc atttttaaag aaaataagcg taggaataga
     3121 gcgaacacca aattcagctg ctaaatcacc ttgttcatct gtatttactt tgcaaatttt
     3181 agctttacca tcgaagtcat ttgaaagttc atcaataact ggagcaagca ttctacaagg
     3241 tccgcaccat ggagcccaaa aatcaactaa agctacacct tcttttgctt gagcaaaatt
     3301 atcacttgtt aattcaatat attttcccat aatttttcct ttctttaatt tttgtctaat
     3361 tgtattttat ttttttaaat atcagcttaa aaacttatat tttcgcaaaa ttgtatcaca
     3421 tcatttttaa tgcaaatcag atcaatctga aaatccgatg aaattccatt tttaagatga
     3481 taaaattcta tagtttttaa aattttttca agtttttttc tatccaaacg ctcggaaact
     3541 tcataatcat tttgagtaaa tttaacctct ataaaatgta aaatttcatc ttttttggct
     3601 attatatcga tttctccaaa tttagaatgg aaatttcttt ttaaaatttc aaagccttgt
     3661 ttttttaaaa atttacaagc cttatcttcc cctaaaattc catctaaata agcttttaca
     3721 cccattattc tatacgcatc ataaaaggct tggtttttat aaaatcttgt ttgcgtaaaa
     3781 tttcaagcaa attttgtatg cttttttcat aagttaaatg tgtagtaaaa aacaaagtac
     3841 tgtaattttc atcatttttt ttaggttttt gtaaaaaact atcgatagaa atattatttt
     3901 cactcatcaa ttgtgtgatt ttagataaaa tccctatttt atcttcaact ttcaccctta
     3961 aataatattt tgtataaatt tcatctttgc ttaaaagctt gtattctaaa gtattcacaa
     4021 aaccaagcat tggtgctttt acctgatctc ttgctatatc cataagatct gaaatcacag
     4081 cacttgcagt ggcctctcct cctgctcctg ctccataata caaactttca cccaacaaat
     4141 ctccattaat gcttatagca ttcatcactc catcaacttt tgcaagcatt ttttctttat
     4201 ctatcatagt aggatgcacc cttaattcta ctttattttc acgcacctta gctataccta
     4261 aaagttttat ggtaaattca aactcattag caaaatacat atcttcaggt gcaatttcac
     4321 taataccctc gatcaaaata tcttcaggtt tagctttaag attataagcg atacttgata
     4381 aaacaagcag tttatgtgct gcatcttgcc cttctatgtc aaaagttgga tcagcctctg
     4441 cataacctaa attttgagct atttgcaaag cttgtttaaa actcatattt ttttgactca
     4501 tagaacttaa aatataatta ctcgtaccat ttaaaatccc ttttatagcc aaaatattat
     4561 ttgcacttaa accttctttt aaaaccttga taataggaat tcctccagcc acacttgctt
     4621 cataaccaaa agctaaattt ttagccaaat tttcaagttc ataacgatga taagcaagca
     4681 tagctttatt tgcagtaaca acagcttttt tcttttttaa aatttcactc actattttaa
     4741 aagcttcatc caccccaccc attaattcta caaaaacatc tacatcagca tttaaaattt
     4801 ctgcaacgct atgagtaatt ggaattaaag catttttttt aggacttcta gcaagagcga
     4861 tcacaggagt tatgctttgc ccacatcttg cacgaatgag tttatcattt tctaaaagaa
     4921 atttaaccac cgcacttcca acagtgccat aaccaagaat cgctactttc ataacttact
     4981 cttttaaata ttttttgata ttacgtgcag cttggcgtat gcgattttca ttttcaatta
     5041 aagcaattct tacatactca tcacctgctt cgccaaaacc taccccagga cttactgcaa
     5101 cactagcacg ctgtaaaagt tgctttgaaa attctaaact ttttaaatgt cttttgcttt
     5161 cagggagttt tgcccaaaca aacatacttg ctcttggttt ttgaagtttc cagcctgcat
     5221 tttcaaaagc ttcaagtaaa atgtgcattc ttttatcata agttgcacgg atttcatcta
     5281 cacaagtttg atctccatct aaagctatgg tagctgctac ttgaataggt gtgtacatac
     5341 cataatcaaa ccaagatttt atttttttaa gcgcactgac taagcgttta tttcctacta
     5401 caaaacccac gcgccagcct gccatattgt aagattttga aagagtgtaa gtttctaccg
     5461 ctacatcttt tgcgccttca atttccaaaa tagaaggagt tttatagtca tcataagtta
     5521 aatctgcata agcaatatct gaaataatat aaaatctttc tttttttgcc gttgctatca
     5581 atctttcata aaaacttttc tcacaagtta ctgttgttgg attatgcggg aaattaacaa
     5641 cgacatattt tggacacggg atgctttcat ttaaagtttt atgtaaattt tcaaaaaatt
     5701 gattttcatc aagctcaaat ttttcattat aagctaaagg catttttgct acattacctc
     5761 ctgctataat aaaagcttga gtatgtatag gataagcagg agttggcaca atagcaacat
     5821 ctccaggatt tataatcgct cttgcaagat ttacaaaacc ctcttttgaa cccatagtag
     5881 ctacaacttc attttcagga tctaggttga cattatattt tcttttatac caattacaaa
     5941 ttgctaagcg aagtttataa atccccatgg atgtagaata tcccgaggtt ttatctttgt
     6001 tagcactttc acaaagttta tctataatgt gttgtggagt tttaccattg ggatttccca
     6061 ttgaaaagtc gatgatatcc tctccagcac gtcttgctgc catttttatc gcatttactt
     6121 ctgcgaaaac ataatttgga agtctttcta tggtattaaa acggatttca tcaaacattt
     6181 cttaatcctt tattttttaa gtgtgatttt taaacccctg cgtatattat ctaaactata
     6241 catatcgctt acaatagcat atatagcacc atttggaata agttctgaaa aatgattatt
     6301 tttattttcg ctttttactg ctttaattag attcagattt ttatctaaaa agaagatttt
     6361 aggaaaccaa ttgtctaaat catttgcatc aataatcaaa tttgtagcat tttttaaatc
     6421 aagcacatag tctttaaggg gcttttctaa tgattttgga gtatttaaat taacatttgt
     6481 attggttttt aatacagcat tggaaaaatt taaatcatat tcatagtcat ataccccaat
     6541 acgcttaata ttatttatat agacagaatt ttcttttaag agattgtaaa gcgttccagg
     6601 atctaaaaca tattgagatt ctacttgtat ggtatagtca atatttcctt ctcttaaaat
     6661 caaatctgta gggataaaat atatatatcc agcatctgtt aaaacatcgg ataaaatttt
     6721 aaaaaacata acttcatcag cttttgcttt aaaatttagt cttagacttt gaggatttga
     6781 tagtgttaag gcaattaaag aattggtttt taatatttga gatatttttg caatatcaca
     6841 atttccatta ttatctatgt aagaattatt tgaaaataat aattctagtt gagaattttt
     6901 actaggattg tttactaaat tttttgctaa ttcaagactt gagattgcaa aagatatatt
     6961 aacccaaaaa gtaagaataa taattttttt taccattctt tacctttatt taattttaca
     7021 aattcagcag ctgaaatact tgtaattttt ccatctttaa tcaagaaacg ttttgaaatt
     7081 cctgcaggaa atttttgttc tttattttct tgatcaaaca ttgttaaagc tgcagcccct
     7141 gttaaaatta actgatcttt atctaaagaa atattaaaat ctttttcttt aacaaagctt
     7201 gtttttttaa ggctttttaa atctatcaaa cctatccaaa tcttggtaga ggttttaaaa
     7261 tgtgcttctt ttaaagaatc agtttttggt gtatttgtgt cttcttggat ttgggtattt
     7321 ttttcttcat cgagtagggt tgtgttattt tcactgatat tattttctat gcttatgttt
     7381 ttatcatttt cttgtaatga gatgttttgg cttggtaaaa cgctctctgt tcgatttgtt
     7441 tcttgtgctt tattgttgtc tataacaaca acattgtttc cacctaaaga ttttaaattt
     7501 tcttgtgctt gtcctatgat atctataact gttgcactag tattattttg ttcatctttg
     7561 aaaaaagttt taagtgtatc aaaataataa attccacttc ctataatcac taaaacaata
     7621 agaacaatca aaaaaggcca agtgttaaag gatttttgac tataagcatc tagttttggg
     7681 gttatcattt ttgattttgt ttgtggagta ggattgtttt cgttaagata agcttcatac
     7741 tcttcgttaa aatcactaaa gtcgagttcg tattctctgc tcaaaatttt aacaaaacct
     7801 ttaacattaa aacgacttaa aacagcaaaa ttcttttcta ctaaagcttc aagaaaatca
     7861 agttcaattt gcgtttttgc tgcaacttct tttaaattta attcttgtat ttttttccaa
     7921 ttaagcattt aacatcctat cacaaagtat tgcaaaagca gcgctgacat taagactatc
     7981 aaaattattt ttcatcgcaa tgcccacaca ttcatcgcat ttttttacaa ttttagagct
     8041 taaaccaaaa ccctcactac ccaaaactaa aactttttta ccattgctta tttttacact
     8101 gtgaatttct tttcccgagc catcactcgc ataaaaataa aaacctactt gttttagttc
     8161 atttattaca cttaaagcat cgttgcttat cacaataggt aaatcaagag ccgctccgct
     8221 gcttgtgcga attactcctt ccatggctaa tttttcacca ataaaaatta aagccccaac
     8281 ccctaaagca taagctgtac gcgtgatagc ccctatattt cctacatcac taattccata
     8341 aagcataaca ataaaatcat tttttttgat ctcatttaaa tttgcaaaag aactttcttt
     8401 aatatctagc aaaaaacctt gatgatttcc acctttcgca taagcttgag cagttttaaa
     8461 atcaagtttt ttgattttaa aacctgattt tgcgattttg gaaaaagtaa ttttatcaca
     8521 ttcttttgct aaataaagct cattgataca gtctttatga tattctaaaa tataaaaaaa
     8581 tatttgcttc ccataaacta tcatattaaa attttaccta atcttgactt aaaagcagtt
     8641 tttgataaat ttcttttgca ttttttccat tgatctttga taataatttt gcttttgctt
     8701 ttaaagacag ctctaaatcc ataatatctt tttcacaaag agtattttgc aaaaaatttt
     8761 gctcttttga ttgcagtact acaacccatt caccgtttaa attagacttt tttaaaattt
     8821 cagaaagctc tttagcattg cctttaaatt ttttttcaaa ttttttactg atttctttaa
     8881 tcaaaaaaat ttctctttgg ttgtctagaa tcataatctg ttctactaaa gataaaatac
     8941 gcttggggga ttcgtaaata atacttggat aaggaaagtt taaaattttt tctatatctt
     9001 tttgtctttc tttgccttta tttgctaaaa aaccaataaa gataaattct ttttgacaaa
     9061 atgctgagct tacaagagca actaaggctg catttgcacc tggtaaaatt tcataggtga
     9121 tattattttc ttgtgcaaat tctaccaaag ccttgccagg atcactaatc cctggcattc
     9181 ctgcatcgct taaataagct acattttttt caaatatctt taaatcaata cttgctaaaa
     9241 cttctttttc attatgggag tgtaaggcta taaatttaga aatatgtata tcagtgtgaa
     9301 atttggtatt taataacgaa atcaaagact tacttactct tgtatcttcg caaaacacaa
     9361 gatcgcaagt ctttaaaagt tctaaggctc taaaagaaat atcgcttaaa tttcctatgg
     9421 gagtaggaat aaaataaagc ataattattg cattgcgtat tttttcttaa atttctctac
     9481 acgacctgca gcatctacaa ttttttcact gcctgtaaaa aaaggatggc aatttgaaca
     9541 aatatctact cttaattctg ctttgtttga ctttgttgta aaagtatttc cacaagcaca
     9601 acttactttg cattctacat attctgggtg aatttctttt ttcattagtt ttccttaaaa
     9661 attaaaacaa taagccgtga ttataaatta tttaacataa aaaagagatt aatttaagaa
     9721 aagttaaagc aaaatttttg aagctatagc tataatagct gtttgacttt ttagaatatt
     9781 agagctttta agagagattt tccggttaaa caataatctc tcatcattgt taaatccacc
     9841 ttcaggacct ataaaatata attctttttc atcgaaatga ctttgttgtt ctccttgaaa
     9901 atcaaccata attgcatttg gaaatttttg aacaaattct tgagtgcttt ggtggataat
     9961 taaatccatt ttagtatttc taccgcattg ttcacaagaa gaaataatga ttttttcaaa
    10021 tctttctaaa tcgattttaa aatttctttg tgaaaaattt gtaaaaacca aatgtaactt
    10081 ttttactcca agttcattta agaaaggtag agttttttct aaaattttaa tatctataat
    10141 ggctaaggct aagtttaatt cactttgttt tatattttgt gattttttgt ttaaaaattt
    10201 taaagtgcaa gaatttcttg ttaaatttgt gattgtatag ttgtaaagaa aattatcttg
    10261 taaatttcta agatttagct ccgaattttc ctttactctt cttactttta aatggttaaa
    10321 gttttcacct tgaagttgta taaactcttc tccagcttgc ttgttataca aaaattgcat
    10381 tttatagata tctttctatt aaaaaaggca aaaacaataa aaaaatttca aaaggtaaaa
    10441 tcaaacaact aatccatcta aaagtggcat attttctaaa tcttcttgct tttttaaaac
    10501 aaacaaagtg aaaaattgct aaggcaaaaa ttaagatcca agaaaaaatc attacccaga
    10561 tattgacatt catttgaaat tgtttcattg ctgataacaa acaacctgta aaaataatca
    10621 aagctaaaaa taaataataa attggtaaaa ataatcgtat tctgcgaata aaaatgaatt
    10681 cggttttaaa atttccttgt gttagtataa gataaaaaag cattaaaaaa ccgctcgcat
    10741 aaagactata aagatgtaaa gctaaaaaga attcgtaact ttgatccatt attttccttt
    10801 gtttataaaa tcagctaaat tttgaatttg ttcatcactt aaaaaactat ggtttttatc
    10861 ttttatcgtt tttatttttt gtataaaaat tttattgctc aaggttttaa tggccgtgct
    10921 gtttttaggt tttaattccc ctttttctcc atgacaagtg gcgcattttt gtttatataa
    10981 agagttgata atactaggat tgacttcatg ttcatcattt gaactttgtg cttcatcatc
    11041 tacaggtaaa ggcaggttgg agtcacttaa ttctgttttt tcatcgtttt gttctatttg
    11101 gactacttct tgatctgtat tttgagtctt ggaaatattt ttttcatcat tagaacaggc
    11161 agataaaact aataaaaaaa aacttaaggc aattaaaatt ttagcttttt gcattaaatc
    11221 tcctttggat ttataaaaat ttcttcattt tttaatttgt tataaaaatc tatatcattc
    11281 cattctgctt taatgccatt ggaaaattct atgtcttgaa gtgaaatttt tggcattagc
    11341 tcactatagg catcttctct aaaaccttgt gcatagcctg ttcttgtttc atgaacaatg
    11401 atgctttgta aagtcactcc ttgttctcca tttaccattt ttgtttgttt taataaagca
    11461 tctataagta tgaaaaatac acgacaaaaa ttttcagcac ttacattaac aggcaggcaa
    11521 atccaacgac ttgaatattt tttcatttct tctaaatatt ttgcgtcatc atatttaaaa
    11581 agagtgatag catgatcaaa actatcaata atttggcgta tataggtttt taaaagtcca
    11641 aaatcataga ccattccagc attatctaaa tatttgcttt caagtaaaac ttcaactttg
    11701 taagaatgtc catgaatgct acttttgcaa cgcttagaag aacaaaatct aacaatgtgt
    11761 gcgttttcaa attcaaataa ttttcttata atcatacacc ctctttatcg ttccaaagac
    11821 gaatatgaat tctatcagaa taattataac cattcttaat acaaaattca gcaatttttt
    11881 gagcattttt tttaaggttt tgctcatttt cacccatagg catacaaaaa atttgatttg
    11941 gagcttcttt tagaatttca ttgatttcta aaaatgaatt atcaagagta ttggcatcta
    12001 aaacaaattt ataaaaacta tcttttgcgt aatttttaaa tgcttttaaa gctttaaaat
    12061 ttaatcgttt atcttttttt atcccactat tttggagttt aacgcttaaa gcaaaaatac
    12121 attctttgta aaaaggatat ctatcaaaat caatttctat gcttccattg ctttcaaagt
    12181 gtatttcgaa tttatttttt aataacattt ggataaattc tataaattca ggattttcat
    12241 aatggattaa tggctctcca cctgtgataa caactatagg atcaaagtct ttttttaatt
    12301 ttatcactct ttttaaaagt tcattagcat ttaaagtttc ataactttct ttaaaatctt
    12361 ttgtgaaaac agctcttatc gtgtcacatc caatgagagt tttatcgttt tttgatattt
    12421 ttacattaaa acctaaacag ttgaaattgc aaccagcaaa acgcataaaa atagctaatt
    12481 ttccattata tttgccttct ccttgaatgc ttaagaaact ttcaacaagt tgcaaaatta
    12541 acctccagtt tgataaaaag cacgagatga ggtttcatta tcaacaacac tccatttatt
    12601 tttttctggt ttatttctta atacttcttg taatatttct acagcggctt taatatcacc
    12661 ttttcgaacc gcttctttta tgcttaatgc ttcatcaaaa taaaggcaag gtattaacaa
    12721 gccttcagca cttaagcgta tgcgattgca agaatcgcaa aattcatggc tatgaggatc
    12781 tataattcca aattcataat catctgcctt gtaaatactc acaggtgctt tttcatcttt
    12841 ttttataagt tgaatttgat atttttgact caaaatttgt ataatttcat ctctttttaa
    12901 tccttgtaat ttaccataag catgagtatt ttccataaat tctataaagc gaatttgagc
    12961 tttttttgat tttgcaaatt ccaaaagaga tatcagttca tcatcgttta aatttttaag
    13021 agctacagta ttaagtttta ctttcaaatc tagatttaaa gcttcatcaa ttccagataa
    13081 aacactatct aatacatctt tttgcgcaag agtttttgct tttttgtgat ctagggtatc
    13141 aagtgaaata ttaagtcgtt taagtccagc attttttagg tctttagcaa agtcttttag
    13201 taaaaatcca tttgtagtta tagcaaggtc aatatcgctt ttataatcgc taatcatttt
    13261 tataaaaata cttaaatctt ttcttaataa aggttcccca cctgttatac ggattttttc
    13321 aattccttcg tctatagctg ctttaacaaa taaaaaaagt tcttcaaagc ttaataaatt
    13381 ttcttttggc tgataatcga aaggaatttt tggcatacaa taaaggcagc gaaagttaca
    13441 tctttgtgta actgaaattc taagataatt tatctttcta ccgaattgat ctataagcat
    13501 ttattttcca ttctatttta ttaatttctt aaattttaag acaagttcta catttccagt
    13561 gccaatgcgt aaatctttag cgatttgttc tatgcttttt ccttctttga aaagattttc
    13621 tattttttgt tcttctgtat cgtaatttgg tgtaagttta gccatgcttt gtgctttttg
    13681 ttccaaattt aaaagacgat tttgttgttc attttgaaaa tcttctatga tatgttccat
    13741 agtttttagt gttcttaaaa caggagtgat ttttgaactg atttgtttat caagttcaat
    13801 cataatttct tcttttaaaa gagaggtttt atagtcttca tcctcttcgc tatcatcttt
    13861 aactcctaat tctttacgaa aataatgaag ttctttggta atatcttcta tcacattttg
    13921 aagttttgct atttttgcat tattttctct ttctttgata ttcatgtagg ctagcattgc
    13981 aattaaaagc acaattataa aaactaaata aagtacatca tcactcattc ttggcctttc
    14041 ttatttctta tcatatttct ttggatttca acaacaaaag catcaaaagc cattttgtct
    14101 tcaggcttaa ttttgataat ttttgccaat gtttgacttt gagctttgat aaaaatagct
    14161 attttttgat tatttaaatc aaatcttaaa taatattctt tatcttcttc taaaatagta
    14221 tccaaaaaat ttagatactc aaaatttaaa gattctatta cccctttttg cttaagtggt
    14281 ataagttctt tatttttatc taaagaattt tcaagtctta aaatatcttc ttttagactt
    14341 aaaagaagat caaaaataat tttttcaccc tcgtcaaaat caatgcgtaa agcaagtttt
    14401 ttccatttta aaatttgaga aattgctcca agttttaggt attctccaag aaaacggtta
    14461 ttttctattt cacaacattc taaatgagct tcaaatcctg ctttaaaaag tgctaattcc
    14521 ataataaatc aatccaaata aaaataaaaa agataatact taaataacca tttagagtaa
    14581 aaaatgctct atcaatatga gcaaaattct tatgaacaat tttatgttcc aaggctaaaa
    14641 taataccgct tataattacc ccaataagtg ctatttttcc aagtgctaca ccccaaactt
    14701 cccacacaaa aagaagccaa aataataccg ctaaaatatg gcaaaaagat gatataaata
    14761 aagtagcctt tgaaccaaat ttagcaggaa tagagtgaag tcctattttt ttatcatact
    14821 ccatatcttg taaagaataa agcagatcaa acccagctgt ccaaaaagtt acacctaaac
    14881 ataaaataac gctataaatg tgaatttcac ccataattat aacacttcct gcaataggcg
    14941 caagtcctaa acaaaatcct aaaactaaat gtgctaaaga actaaagcgc ttaaaagctg
    15001 aataaatagc caataccaaa agcacaggaa aagacaaata aaaggccaag gtattaataa
    15061 aataagaaca tgatataaaa ataagtgcat taataatgat aaaaatccat acgctttttc
    15121 tacctatttt tccactgaca ttagggcgat ttgcacaacg aggattatcc ttatctatat
    15181 cttcatccat taaacgattt gtagccatgg caaaatttct tgcacttact gcacaaataa
    15241 tgcctaaaat caacgcctta aaaccaaacc aagcagtgtc atttgcaagt tttgatgcta
    15301 caatcataga ggaaaataaa aaaggcaaag caaaaataga atgcttaaat actacaagtt
    15361 ctaaaatatc tttaaatttt atccagaatg tgttcatttt tctactttaa aatatttttt
    15421 gctatgattt tactaaaatt tttataaatt ttaggataaa tattaaaatg ttttttgaaa
    15481 tagcattaat aggaacaacc gcgagtggaa aaacatacat agccaatact ttagcaagag
    15541 aatttaatgc tgttgtttta agtcttgata gtctttgtgt ttataaagag attaatatag
    15601 caagtgccaa gccttcacaa gatgatcttg cgagtataaa atactttggg gtaaatttat
    15661 tgagcgtgaa tgaacatttt aatgttgagt tattcataag agaatatcaa aaagcaaaag
    15721 aatttgcttt agctagaaat ttacctctaa ttatagtagg tggaactgga ttttatttaa
    15781 aaactatgat agatggttta agtgaaaaaa ccttagagtc aaagagttct ttaaataacg
    15841 atgaaattta tgctctttta ttaaatattg atccaaacta taaaatagaa aaaaatgata
    15901 cttatagatt aaaaaaatgg ctgggtattt atgaacaaac aagagaaatt cctagtgaat
    15961 ttttaaaaag aacacaaaaa actggggtgc ttaaagatat agaaatttat gagcttgcgt
    16021 gggataaaga aattttaaaa aaacgtatta aaactagaac aaaagaaatg cttgataatg
    16081 gacttttaga tgaagcaaaa attctttttt ctaaatttga tcataaactt aaagcattaa
    16141 attctatagg tttgaaagag tgtaaagaat atttagatgg agaaatttcc tttaaagagc
    16201 ttgaaaattt aatcacgata catactacac aacttgccaa aagacaaaga acttttaata
    16261 aaaaatttca aagtaaagcc ttggaatttg ataaagcttt agctacttta agaatgaaat
    16321 tttcaatcga aaaataaatg ttctattaga atttttactc ctagtataat taaaaccaat
    16381 ccgcctaaaa gttcagcttt atttttaaga taaattccaa atttattccc tatttttaga
    16441 gcaatgatac ataaaatgaa ggtgataata cctattaaaa atatagctaa taataaattt
    16501 acatttaaaa atgcaaaact cacaccaact gctagtgcat cgatactcgt agcaattgct
    16561 aaagctagca tggttttaaa gccaaattga ttggcattac tatcgcaatt ttcattttcc
    16621 aatgactctt tgatcatttt taatcctatt aaagaaagta aaataaaagc tatccaatga
    16681 tcaatactcg caataaaaga tgcaaaagtt atgcctataa aataaccaat agttggcatc
    16741 aaagcttgaa atccaccaaa ataaattcca acaataagat aatgttttaa atgtagtttt
    16801 ttaacactaa aacctttgca tagtgataca gcaaaagcat ccattcctaa agcacaggat
    16861 aaaaaaataa gactataaaa atccataaca aatcctaaaa ttttataaaa aattgaagat
    16921 gaaattataa tcaaacaaag ataaaaatca cataattttg atatatttaa ttaaatttta
    16981 agaaataaat atatataatt caatttcatt tttatttttt actccttaaa agtggcccat
    17041 tcgtctagcg gttaggacat cgccctttca cggcggtaac acgagttcga gtctcgtatg
    17101 ggtcaccact ttttaatttt tcttttaaaa taacaatttt ttcatttttt ctattgaaat
    17161 ttaataaata ttaataattt attttgtaga atacgaatag cttttgatat aagtctatta
    17221 tagacttata tcaaggctgg gcattattga gctggtgttt gctcttttgt ttttttgtga
    17281 gttttagctt catgtttttt atcagcttta gcttttgtat gtgtttgatt tacatcgctt
    17341 ggagtattag ctgcaaaaac attagctgcg aaagcaccta gtaatgctga gattagtaca
    17401 acttttttca tattttcctc cttatgaata atttttagtt gcaaattaat tgtaattatt
    17461 aaaaatcaac aaatagatat tttttgtaaa aatatttcaa a
//
LOCUS       DARBAR010000026        17052 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.026, whole genome shotgun sequence.
ACCESSION   DARBAR010000026 DARBAR010000000
VERSION     DARBAR010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17052)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17052)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17052
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.026"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..501
                     /locus_tag="SB815_000633"
     CDS             <1..501
                     /locus_tag="SB815_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HEG0906394.1"
                     /translation="IRNLTNQTCQMGILKDGNVLYLEKIDANNTVQLKSFIGTSYPAY
                     ATSLGKALLSNKNKKELEKLYPKNFDKITENTLNNINELYQQIKQIKKEKIAIEIGEM
                     NPQIECMAIGIEHKNKIIAAISISYLIYCSNKAFREKNKKILLEEKNKIEKVLKIYFN
                     DLDTLY"
     gene            complement(532..5085)
                     /gene="rpoC"
                     /locus_tag="SB815_000634"
     CDS             complement(532..5085)
                     /gene="rpoC"
                     /locus_tag="SB815_000634"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEG0906395.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMGAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIVKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(5078..9214)
                     /gene="rpoB"
                     /locus_tag="SB815_000635"
     CDS             complement(5078..9214)
                     /gene="rpoB"
                     /locus_tag="SB815_000635"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEG0906396.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKILEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(9323..9700)
                     /gene="rplL"
                     /locus_tag="SB815_000636"
     CDS             complement(9323..9700)
                     /gene="rplL"
                     /locus_tag="SB815_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEG0906397.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMVAGGA
                     VAGGAVAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(9721..10200)
                     /locus_tag="SB815_000637"
     CDS             complement(9721..10200)
                     /locus_tag="SB815_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEG0906398.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLSVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(10352..11053)
                     /locus_tag="SB815_000638"
     CDS             complement(10352..11053)
                     /locus_tag="SB815_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEG0906399.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(11108..11533)
                     /gene="rplK"
                     /locus_tag="SB815_000639"
     CDS             complement(11108..11533)
                     /gene="rplK"
                     /locus_tag="SB815_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEG0906400.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(11559..12092)
                     /gene="nusG"
                     /locus_tag="SB815_000640"
     CDS             complement(11559..12092)
                     /gene="nusG"
                     /locus_tag="SB815_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEG0906401.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(12102..12281)
                     /gene="secE"
                     /locus_tag="SB815_000641"
     CDS             complement(12102..12281)
                     /gene="secE"
                     /locus_tag="SB815_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEG0906402.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVAVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(12300..12375)
                     /locus_tag="SB815_000642"
     tRNA            complement(12300..12375)
                     /locus_tag="SB815_000642"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(12340..12342),aa:Trp,seq:cca)
     gene            complement(12388..12546)
                     /gene="rpmG"
                     /locus_tag="SB815_000643"
     CDS             complement(12388..12546)
                     /gene="rpmG"
                     /locus_tag="SB815_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEG0906403.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(12599..13798)
                     /gene="tuf"
                     /locus_tag="SB815_000644"
     CDS             complement(12599..13798)
                     /gene="tuf"
                     /locus_tag="SB815_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEG0906404.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(13867..13941)
                     /locus_tag="SB815_000645"
     tRNA            complement(13867..13941)
                     /locus_tag="SB815_000645"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13907..13909),aa:Thr,seq:ggt)
     gene            complement(14046..14122)
                     /locus_tag="SB815_000646"
     tRNA            complement(14046..14122)
                     /locus_tag="SB815_000646"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14086..14088),aa:Gly,seq:tcc)
     gene            complement(14129..14214)
                     /locus_tag="SB815_000647"
     tRNA            complement(14129..14214)
                     /locus_tag="SB815_000647"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14178..14180),aa:Tyr,seq:gta)
     gene            complement(14264..14339)
                     /locus_tag="SB815_000648"
     tRNA            complement(14264..14339)
                     /locus_tag="SB815_000648"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14304..14306),aa:Thr,seq:tgt)
     gene            complement(14431..15192)
                     /locus_tag="SB815_000649"
     CDS             complement(14431..15192)
                     /locus_tag="SB815_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG0906405.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKAKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLKEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDEGKIIE
                     ENDPKSFFKNPKSERAKKFLNLFDYHNIDKNNIGL"
     gene            complement(15194..15850)
                     /locus_tag="SB815_000650"
     CDS             complement(15194..15850)
                     /locus_tag="SB815_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG0906406.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(15843..16544)
                     /locus_tag="SB815_000651"
     CDS             complement(15843..16544)
                     /locus_tag="SB815_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG0906407.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRP
                     SFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLHA"
     gene            complement(16560..>17052)
                     /gene="nssR"
                     /locus_tag="SB815_000652"
     CDS             complement(16560..>17052)
                     /gene="nssR"
                     /locus_tag="SB815_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HEG0906408.1"
                     /translation="LLKGKIRIYKSTASDKEITLHYFNPPNFIAEMPAFKKLNYPANA
                     VFEEDGEILEIDFINFQNLCSENKEFNFLLISSLFDKIKILEKKLSQNALDLRTRLLK
                     YLLENEKNLDTISQKQIAIDLNVRAQSLSRVLKELKISELIDTKKGRIEILNKDMIMK
                     ELW"
BASE COUNT         5424 a         3433 c         2249 g         5946 t
ORIGIN      
        1 ataagaaatt taaccaatca aacttgtcaa atgggaattt taaaagatgg aaatgtgctt
       61 tatttagaaa aaattgatgc caataataca gtacaattaa aatcttttat aggcacttcg
      121 tatcctgctt atgcaacatc tttaggcaaa gccttactat caaataaaaa taaaaaggaa
      181 ttagaaaaac tttatcctaa aaattttgat aaaattacag aaaacacctt aaataatata
      241 aatgaactct atcaacaaat caagcaaatt aaaaaagaaa aaattgccat agaaattgga
      301 gaaatgaatc ctcaaattga atgtatggct ataggcatag aacataaaaa taaaataatt
      361 gctgccatta gtatatctta tctaatttat tgctctaata aagcttttag agaaaaaaat
      421 aaaaaaatac ttctagaaga aaaaaataaa atagaaaaag ttttaaaaat ttattttaat
      481 gatttagata cactgtatta atatagcccc gaagggctat aaaatagagt tttattcttg
      541 ttctttaagt tttaaatttt gttcgccata aagccctgtt ccaacaggaa tcattctacc
      601 tagaataaca ttttctttta aatcttctaa gtagtcaaat ttacctgcta tacttgcttc
      661 agttaaaact ttggtagttt cttggaatga agccgcagaa atcacactat cacttccaat
      721 cgctgctctt gttacaccta aaagcacagg ctcggcaata gctggttctc cacccattct
      781 aatgattctt tcattttctt cacggaattt acgtcttgaa accaaatcac cttcaataaa
      841 tttcgtatgt ccactatcta caacttttac ttgtcttagc atttgagaaa cgataacttc
      901 tatatgttta tcagaaatca caacaccttg tccgcgataa acttgctgaa tttcagaaat
      961 caaataataa tgcaaggctt tttcacctaa aattttaagc acatcatgac tcgaaacaac
     1021 tccatctgta agtttttcac ctgcatgaat aaactctcca tctcttactt gaatatgttt
     1081 tgatttgtcg attaaatact cagcacttgt tccatcttct gcttggataa taattctttc
     1141 tttagaacgc aaaggcttat caaaacgaac aacaccatca atttctgcaa tcacagccgc
     1201 attttttggt tttcttgctt caaaaagttc agaaactctt ggaagacctc ctgtaatatc
     1261 ctttgattta gctgctgctt ttggagtttt tgctaaaata tctgcttgag caattttatc
     1321 gccatcatga acaaaaataa cggtttttgg ttcaaggtga taacgcacag ctttatcacc
     1381 ttttcctgca attaccaaag ttggtctaac tccgctaggt aaatactcat taattactaa
     1441 agaacgctta cctgtagctt catcaatttg ctcatcggca ctataacctg cttcaatatc
     1501 ctcaaagctt acaacaccat caatttctgc aatgatagta ttattataag catcccattc
     1561 tgcaatcact tttctttctt ttttaggagc acttgcaatg atagtatttg cgtcatcgat
     1621 tttttcacta tcgttaaatt ctatcttaga ttctcttggg atatagtgtc tttttgcttc
     1681 tctatcattt tcatcagcaa tcactacaaa gaatcctttt tctttaacaa tatcaccttt
     1741 tttaacattt tttactctat ctaaaccatc gcctttaagg atgtaaaatt tgagtgttcc
     1801 tttttcgcct gctttgatat tttgaactac aggctcgcca tcttctacta aaatttcact
     1861 cgcaaaagga atacgatttg gtacattcca accctcttta atcacttcta cgatactttc
     1921 attttcttct acttgcatgc cgctttgata tggcaaataa agttttccat ctatactgcc
     1981 acttacacct gctaattcat ttggtttagc aagatcgtat tttcttaata tgtattttac
     2041 ttcttgtttt ttatctttaa tagaaacaat cacatcttca tgaatatttt ctatattaat
     2101 cacaccttta aatggagttt tgatttttgg ctccacaagt aaaaccgccg catttctacg
     2161 atttgctacg atatttttac cttctttgtt tttataagtt ttaagattat aaaatcttat
     2221 aaaaccttct ttttgtgcgc ttacttgtct atcttgtaaa tccgtacttg cagttccccc
     2281 gctatggaaa gttcttagag ttagctgcgt tcctggttca ccgatagatt gagcggaaat
     2341 aattcccact gcttcgcctg gttttactaa tttaccttca ccaagattga taccataaca
     2401 ttttgcacaa attccttttt tagctttgca ggtaatagga gtgcggatat tgacactttt
     2461 tataccgctt tcgccaagaa tttttgcttt ttcctcatcc attaaagtac cttccgcaaa
     2521 aagcacagaa tttgtaatag gatcaatcac atcctcagct aaaaccctgc ctaaaattct
     2581 ttcttctaaa gtttctataa tagaactatc tgcggtaatt tcattgattt caacaccctc
     2641 atgtgttcca caatcttcaa tggtaatttt tacattttgt gcaacatcga tgagttttct
     2701 tgtcaaataa cccgcatttg ctgttttaag agcggtatct gcaagacctt ttctagcacc
     2761 gtgagttgaa ataaagtatt caagaacatt tagcccttca cggaaatttg aaataatagg
     2821 cgtttcgata atagaaccat caggtttggt cataagtcct ctcatcgcag caagctgaga
     2881 aatttgagct gcactacccc tagcaccaga atctgccatc atataaatag agttaaaacc
     2941 ttctttatct ttttctacaa gcttcatcat ttcttttgaa agaacattgt ttgtactttt
     3001 ccaaatatca atgattttat tgtatctttc ccctgaagta atcaaaccga gattataaga
     3061 attttgaatt tctcttactt gtttttttgc ttcatcgata gctttttgtt tatcattagg
     3121 aacaataata tctgcaatcg aaattgaaat acctgcttta gttgcatatt caaaacctaa
     3181 atttttaagt ctatctaaga aacttgctgt aatctctaaa ccaccttgtt tataaacata
     3241 atctacaagc gcagcaatgt cttttttctt taagacttta ttccaactat tttcaggcac
     3301 aaaatcaggc aagatggatt taacaatcaa tcttcctgct gtagtggtaa tctttctacc
     3361 atctaccata gtttgtatgc tcgcatgaat atccaaacac ttgctttcaa gtgccatcat
     3421 cacttcatca atgcctgtac aaattttatg cgaaccttta gcacctgctt tttccaacga
     3481 aagataataa attcctaaaa ccatatcttg cgatggaacg gttacagact taccgcttgc
     3541 tggtaaaaga atattcattg atgaaagcat aagcacttta cattctgcaa tagcctcttg
     3601 agaaagcggt acatgcactg ccatttgatc cccatcaaag tctgcgttaa atgctgcaca
     3661 aaccaaagga tgaagttgta tagccttacc ttccactaaa acaggatgaa aagcttggat
     3721 agaaagctta tgcaaagtag gtgcacggtt tagcataaca ggatgtccct ttactacctc
     3781 ttctaaacat tcccaaactt cattggtttt attttctatc atttttttag cttgttttac
     3841 tgtggttgca taaccttttt cttcaagctt agctaaaaga tgtggcttaa aaagctctaa
     3901 agccattttt ttaggtaaac cgcattgatc cattctaagt tttggaccta caacaataac
     3961 gctacgacct gagaaatcca cccttttacc tagtagattt tgtctaaaac gtccttgttt
     4021 ccctttgatg atttcactta aagatttcaa tgggcgttta tttgctcctt ttacagcatt
     4081 agcacgacga ccgttgtcaa aaagcgcatc aacagcctct tgaagcattc ttttttcatt
     4141 tctgataatg atttcaggtg catcaagttc cataagtttt ttaagacgtg tatttctatt
     4201 gataacacga cgatataagt cattcacatc agaaactgca aatttcccac catctaaagc
     4261 cactaaagga cgcaaatctg gcggtaaaac tggaagattt gtaatcatca tccattcagg
     4321 acgatttggt acagcttcgt cgctatcggt attggcgttt aaatttgaat ttaagaaatt
     4381 ttctacaact tttaagcgtt taatgatagt ttttttctta gcctctgaat ttgtagcccc
     4441 catttcttct ttaagctgat ttaaaagcgc tacaagatct aaatttgcaa gtaaatcacg
     4501 aacaacttct ccacccattc ttgctttaaa gccgctattt tcatagcgtt gcattaaatt
     4561 ttgatattgc tcttcgttca aaacatcgca atattccact tttttagtac tttcattatc
     4621 atagaaagca tcacctgggt tttcaacaat ataagcttca taataaagca cgcgctcaag
     4681 atctttcatc ttaacaccca aaagcgttcc tatacggctt ggaagagaat taacatacca
     4741 aatatgagcc acaggagtta caagctcgat atgccccatt ctagaacgac gcacttttga
     4801 atttgctact tcaacaccac atttttcaca cttaacgcct ttaaaacgca tttttttgta
     4861 tttaccacaa agacactcat aatctcttat aggtccaaaa atctttgcac aaaaaagccc
     4921 atctctttca ggctttaagg ttctataatt aatagtttct ggttttttta cttctccata
     4981 agaccatgat ttgatttttt caggacttgc aagtcttagt tgaaatgctt caaaatctct
     5041 aggtcttgca tcttctttaa tttctattac tttaaattta ctcattatct tcatccttat
     5101 caaaaatctc aacatctaaa gcaagagatt taagctcatt ggttaataca aaaaatgttt
     5161 caggaattcc tgttgctgga acattttcac cttttgtcaa tgctttatag gcactaaatc
     5221 taccttctac atcatctgat tttatggtta acatttctct taaagtgtga gccgctccat
     5281 aagcttcaag tgcccaaact tccatttctc caaatctttg tcccccaaag agtgctttac
     5341 cacccacagg ttgttgggta accaagctat aaggtcctgt acttcttgca tgaacttttt
     5401 catcaaccaa gtgatggagt tttagcatat acatacatcc tacatgaaca cgctctgcaa
     5461 ttttttcccc cgtgcgtcca tcataaagtt ctgttttgcc atccatatct atcttagcca
     5521 ttttaaaaag cttgctaaat tcttctatat ttacaccttc aaaaacagga gtagaaaatt
     5581 taactccttt actccagtct ctagcatagt ttaaaagctc ttcatcgctt aagcttttaa
     5641 taaattcttt ttcgtttgca agtcttggaa tagaacaaat ttcaagtatt ttcgctctta
     5701 attctttaag aaaatctttt tgctttctat caaaaatttc ttgaatttga tccccaagtc
     5761 taagtccaac taaacctaaa tgactttcta aaatttgacc tatattcata cgacttggaa
     5821 cgccaagtgg attaagcgca atatccacgc tcttaccatt tggcaaataa ggcatatcta
     5881 cttcaggaac tatagttgaa actatacctt tatttccatg acgtcctgcc attttatcac
     5941 cgactttaag ctttcttttt gtagcaatat aaactttaac aagcttaatt accccacttg
     6001 gtaaaatatc atctttttct aaaatttcaa gcttttcatc gtgttctgct tttaattttt
     6061 tcttctcatt ttggaaatga ttttttaaat catcgtattc tttttgaatc tctttagaat
     6121 aagctttaat caaagttgtt aaagtaaaac gattgatttt ttcaagttcg ctaatatctg
     6181 cagtttgtcc ttttttataa tttttatctc caattttttg atcgctattt aaagaggctt
     6241 tggaaagaag agcacaaaca cgaagcattt cttctctatc catcatcaaa agtctatcat
     6301 gatgctcttt ttctaaagcc attttttctt tatcataaga ttttattgcg cgatcatctt
     6361 tttcatagcc ttttttagtg aaaattttaa catccacaac aacaccctct aaagaagcgg
     6421 ttgcataaag ggatttattc acaacatgtc ctgctttttc tccaaaaatc gctcttaaaa
     6481 gtctttcttc aggagttggt ttaacctcac cttttggaga aaccttaccc accaaaatca
     6541 tacctggttt gatatgggta ccaatttttg caataccgct ctcatcaaga tgcgcaacat
     6601 cttcttcttt tacatttgga atatctttgg taatttcttc tataccgtct tttagttctc
     6661 ttgcttcaat ttctttttca taaatgtgca cgcttgtaaa agtatcttca cgaataattc
     6721 tctcacttac aactatagca tcctcatagt tataaccatt ccaaggcata aaagcgatta
     6781 aagcattttt acctatagca agttcgcctt gatccataga aggaccatct gcgataattt
     6841 gtcctgcttt tactatatca ccttttttaa caatagggtg ttgaatataa tttgtatttt
     6901 gattggttct taaatttttc tccatagtgt aatggtcaat aaatggacct ttatcatctt
     6961 cacctaaaat gaaaatgctt ttattatcca ctttctcaac cacaccgcca cgctttgctt
     7021 taacagcttc ccaagcatca cgcgcaataa tttgttccat acctgttcct actatcggag
     7081 ctgaagcagt aagaagtggc acagcttgac gttgcatgtt tgaacccatt agcgctctgt
     7141 ttgcatcatc gtgctctaaa aacggaatca aagaagctgc aactccaaca accatacctg
     7201 agcaaagatc gattaattgc acttcttcgc gtcttgcaag tatagtttca ccatcttgcc
     7261 tagcctcaac aaattcttct actatattgc ctttagcatc aaccttagtt gaagctggtg
     7321 cgataaacaa gccttcttct tgtgtcgctg taagataaac aacttcatta gtcactttac
     7381 catttacaac ttttctatat ggcgcttcaa caaagccaag ttcatttact tttgcataag
     7441 tagaaagagt gttaatcaaa ccaatatttt gaccttcagg tgtttcaact ggacaaattc
     7501 taccataatg tgtcgcgtga acatcacgca cttcaaaacc tgctctttct tttacaagtc
     7561 caccttcacc aagcgctgac aaacgacgct tatgagtaac ctcgcttaaa gggttggttt
     7621 gatccataaa ttgcgaaagc tgacctcctg taaaaaattc aatgatagtt gtagtaatca
     7681 ttttaggatt gattaaatca taaggcatta ctttatcaag atccgcattt aaagaagtaa
     7741 atttatctct gatcgccttt tgcatttttg caagacctaa atgaagttca ttggctaaaa
     7801 gttcacctat agaacggata cgacgatttc ctaaatgatc tctatcatca atatgtcctt
     7861 taccattttt tactttaatt aaatattttg cagttttaat aatatcttca ttagtcaaaa
     7921 cagtaacata ctcaggtact tcaagaccta atttatggtt cattttcata cgacctacct
     7981 tggtaagatc gtatctttca ggattgaaga ataaatcatt tacaaaagcc ttcgctgcat
     8041 cttttaccac aggttcacct gggcgcataa ctttgtaaat tctaatcgca gctaaatcat
     8101 tttcatcatc gatattttca ctttgtttaa gaagttttag agtttctcca tcttgggcaa
     8161 aggagttaat aatcgctgca tcaacgccat tagccaagtc atttgctata tcaaaacttt
     8221 tttgctcttt aatcttagca agcttactct catctaacaa agttaaagaa tcaaataaaa
     8281 cctctccact ttctttatca ataataggat ttgctaaata acgattaagt aaaatttcta
     8341 caggatattc tatccatttt aaaccgtctt taataagctg ttctgctttt ttctttgtaa
     8401 gtctttttcc agcttgatga acgatttttc ctttttcatc tttaatatca tattctattc
     8461 tatccataaa atcatttgga ttaaattctg ttaaaaattt atcttttttc acatgtatag
     8521 tctgaatagg ataaaacaac ttaataatat cttgtttttt ataccctaaa gctctaaaaa
     8581 gcatagttac aggaactttt ctacgcttat tgattcttac atacaaaaca tctttggcat
     8641 cgtattcaaa ataaagccac gaaccacgat caggaataat ttgtgctgta taaacaagct
     8701 tatttgcaac cgttgaactt tcttcttctt taaaaataac accagggctt ctatgtaatt
     8761 gatttacaac cactctctca accccgttaa tgataaaaga tacacgatct gtcattaaag
     8821 gaatttcgcg gatataaatt tcttgttctt taatatcttt tacgccaact ttttcccctg
     8881 ttttttcatc tttttcatgc agagtaagac ggattttcat ttttaaattt acagaataag
     8941 tcaaacctct ttccatgcat tcgcgaatgg tatattttgg cttgcctatt tcactactaa
     9001 catattcaag actcaatcta ttttgcggat catgaatagg aaaaattgat ttaaaaactt
     9061 tttctatacc actttcacca ttatcaagat ttaaaaaata atcaaaactc tttttttgta
     9121 attgtagaag atttgggatt tctatttgtt ttgaaatgtt tgagaagtct actcttaaac
     9181 gatttcctaa tttattatct aacatatcgc acatacctca tggtaaattt tgtaaattta
     9241 aaaaagaaga cctaaaaatt aggtaaaaat aaaaaaagaa gacttgcctt ggcaaatctt
     9301 cttctaactt taaagcttaa aattacttaa gttctacttt agcaccagct tcttcaagtt
     9361 gttttttagc ttcctcagct tcagctttag ccacaccctc ttttagagtt gaaggagttt
     9421 gctcaactgc atcttttgct tctttaagac caaggcctgt aagagcacga acgattttaa
     9481 taacttcaat ctttttagca ccgccatcag ttaaaacgat atcaaattca gttttttctt
     9541 cagcagcagc tacagcacca ccagctacag caccaccagc taccattaca ggagcagcag
     9601 acacaccaaa tttttcttca aattccttta caagttctga taactcaaga acacttaaat
     9661 ttgaaatata ttctaataca tcttctttag agattgccat tttttatcct tttatttaat
     9721 ttattcagat tcttttttat ttttaagcgc atttaaacct attgtgaaat tggtaattgg
     9781 cgcattccaa acttgcaaaa gcatagcaag caactcattg cgtgaaggca ttttagcaag
     9841 agctttaacc ttagcaacat ctgcaacttc gccttcaata tgagctgttt tgatttcaaa
     9901 tttatcgtta ttttcttcaa atttagcagc tacttttgaa acacttagct gatcttcgcc
     9961 ccaaagataa atatttgtat ctttaagaac tagacctgtt ttaccggaat tgttaagagc
    10021 aatgttagcc aaagtatttt taacaatttg aacttttaca ttgttttctc ttgcattatt
    10081 tctaagctct tctagttttt ttgtgctaag acctctgtaa ttacaaacta caatagcttc
    10141 actagcttta aaaccttctt caagtttagc aataatctca actttttcgc ttctagtcac
    10201 attttctcct ttccgattga gatttcaagt agagtggaaa tccaattaag cttacgcctc
    10261 gactatcttc aatctaaaat aaacatttca aaaaatcaaa aattttttca aatgtttatt
    10321 ttaaaacaaa agagttgcaa aaaagcaact cttatttcat atcaagcaat tcttgtgttt
    10381 caagctttac agaagggctc attgtcaaag ataaagccgc atttttaata tatctacctt
    10441 tagctgcagc aggtttatgt ttgttaattg cctttacaaa agtgctaaca ttatcccata
    10501 attgttcttt ggaaaaactt actttaccaa gacctgcatg gatatttcct tgcttatcaa
    10561 cacggaaatt tacctgacca ctttttgcat tattaactgc ttgagcaaca tccatagtca
    10621 ctgttccagt tttaggattt ggcattaaac cttttggccc taaaattcta ccaactttac
    10681 caacaagtcc cattaaattt ggagtagcaa tcaaaacatc aaaattcata ttaccttttt
    10741 gaatttcttc tactaaatca tcgctaccca caatatctgc accagcattt ttcgcttcat
    10801 cagcttttgc gtcttttgca attacagcaa cacgaacttt tttacccgtt ccagcaggta
    10861 aaacaacaga tcctcttacc atttgatctg catgtcttgg atcaacatta agttttaaag
    10921 caatttctac agtctcatca aatttagcag actttaaagt ctttattgta tcaattgcat
    10981 cgcttaaagc atactcttta tttgaatcaa ttttttgtga taattctttt aatctttttg
    11041 ctatcttagc catttatttt ctccgcattt taaagtgcta ccgcctttta ccttggcggt
    11101 gaaaggatta atctacgatt tcaacaccca tagaacgagc tgaacctgca ataattttag
    11161 cagcttgatc tctatcttta gtatttaaat ctgcaatttt cttatctact atttctaaaa
    11221 cttgagcacg agttaactta cccaccttat ttttaagtgg attatccgta cctttagaaa
    11281 ttccagctgc ttttttgatc aaatccgtag ctggcggttg ttttgtaata aaagtaaaac
    11341 ttttatctgc ataaacagtg ataacaacag ggatattaaa acctgccata tcttttgttc
    11401 tttcattaaa agccttacaa aactccataa tattaacacc ttgctgaccc aaagcaggac
    11461 caacaggtgg tgatgggttt gcttttgtgg cagcaatttg caatttaatt tcgcctacga
    11521 cttttttagc cataacaaat ctccttactt gatataaatt aaattatttt ctcaacttga
    11581 gaatataaga tctccactgg agttgaacgt ccaaaaatag aaacatttaa ttttaataaa
    11641 ccacgaacca tatcatactc ttctacaatt gcagtaaagt ttgcaaatgg cccttctgtg
    11701 attctcacat tttccccttc ttcaaaagaa atctttggtt taggcgctgc acgattgtga
    11761 actttttcca aaatcaaatt aatatctttt tctgttaaag gggttggctt tttggattct
    11821 ccaataaaac gaccaacctt tggaagagat tgaatgcgat gccaaagctc tgtatttaaa
    11881 tcaagaagtg caaaaacgta tcctgaatac aaacttcttt cgctaatctt ctcctttcca
    11941 ttcttaaatt caataacatc ttcagttgga acaacaattt ctttaagttg ttcttcaatt
    12001 ccgttatctt ttactaaatt ttcaatggct cttttaactg ccatttcact gccagcataa
    12061 gtttgaattg cataccattt atgagtactc atttactctc cttatacgat cgcagaaaca
    12121 atagaggaca taagccaatc cactaacgcc aaaaacaaag aaatcaccgc aacaaccaca
    12181 aaaactgtaa tataggcatt tcttacctgt tcttttaaag gaaaaattac tttccttaat
    12241 tcggcttttg ataatttaaa ataagttatt aatttttcca tttatttaaa ccttaattat
    12301 ggcagggcaa gagggattcg aacccccaac catcggattt ggaatccggc gctctaccgt
    12361 tggagctatt gccctaaggg cgcaagctta actttttagc ttaacttctt tgtgaagtgt
    12421 atgttttttt aatcttgggc aatatttttt taattctaat ttttcagtag tatttttact
    12481 atttttatag gtgctataat taatatcacc acattcttca cactttaaac caactttaat
    12541 tctcatttca attttcctta aaaaattaaa gccaagcttt taacttggct ttattaaatt
    12601 atttaataat tttagaaaca acacctgaac caacagtttt accaccttca cgaatagcaa
    12661 aacgagttcc ttcttcaagt gctactggag cgatcaagct tacagtaatt ctcacatttt
    12721 cacctggcat aaccatttca acaccatcag ctaatttaat cgaacctgta acatcagttg
    12781 ttcttacata aaactgtggt ctatagttgt taaagaatgg agtatgtcta ccaccttcat
    12841 ctttatttaa gatataaact tcagcttcga agtcagtgtg tggagtaatt gattttggtt
    12901 tagcaagaac cataccacgg ataacttctt cttttttagt accacgaaga agaacaccta
    12961 cgttatctcc tgcttcgcct tgatccattt cttttctgaa catttcaaca cctgttacag
    13021 ttgttgtttg agtatcttta ataccaacga tttcgatagt atcacctact tttacaacac
    13081 ctttttcaat tctacctgta acaacagtac cacgacctga aattgagaaa acatcttcaa
    13141 ttggcatcaa gaagtctttt tcagtatcac gagttggagt tggaatatag ctatcaactg
    13201 cagccataag atccataatt tttgctgacc attcaccatc ttgtccagct ttagcttctt
    13261 caagagcttt taaagcagaa ccagaaataa taggtgtatc atcgcctggg aaatcataag
    13321 agcttaataa ttctctaatt tccatttcaa ctaactctaa aagttcagca tcatcaacca
    13381 tatctgcttt attcataaaa acaacaatat atggaacgcc tacttgacga gaaagaagaa
    13441 tgtgctctct agtttgtggc atagggccat ctgcagcaga aacaaccaag atcgctccat
    13501 ccatttgtgc agcacctgta atcatgtttt taacataatc tgcgtgacct gggcagtcaa
    13561 cgtgtgcata gtgacgattg tctgtttcat attcaatatg agaagtagca atagtaatac
    13621 cacgctcttt ttcttctgga gcattatcga tattatcata atctttaagc tctgctaaac
    13681 ctcttctaga aagaacagca gaaatagcag ctgttaaagt agttttacca tggtcaacat
    13741 gaccaatagt accaatattt acgtgtggct tattacgtga aaatttttct ttagccattt
    13801 ttttcctccg tataaaaaat aaattgagca aagcaagtct tatatctata taattttttc
    13861 aattcatgga gctcatagcg ggaattgaac ccgcgacctc tcccttacca agggagtgct
    13921 ctacctctga gccatacgag cgctcagaaa aattatacac aataacagac aacaaaaact
    13981 cttaaatggg atatatactg taagttaaag gttttaaaat acagctccca gttcttttaa
    14041 attattggag cgggaaacgg gactcgaacc cgcgaccctc agcttggaag gctgatgctc
    14101 tagccaactg agctactccc gcaaagcatg gtggtgagtc gtggattcga accacggaag
    14161 gcgaaagcca gcagatttac agtctgccct cgttggccac ttgagtaact caccataaaa
    14221 atattgcttt ttcaatattc tggtcaaaca ctgctaaaat aaatggagct ggttaaggga
    14281 cttgaacccc cgacctgctg cttacaaggc agctgctcta ccaactgagc taaaccagca
    14341 aaaataaaag taagattata actcaaaaaa aaaattttgt caagactttt ttagtttttc
    14401 tataaaattt tagtcttgta aattttatta tcataaacca atattatttt tatctatatt
    14461 atgataatca aataaattta aaaatttctt tgctctttcg ctttttggat ttttaaaaaa
    14521 acttttagga tcattttctt cgatgatttt tccttcatcc ataaaaataa ttttatctgc
    14581 tacagcttta gcaaaaccca tttcatgagt aacaataagc atagtcatac cctcttttgc
    14641 aagatttaac atcacttcta aaacttctct gacaatctca ggatccagcg ctgctgtaac
    14701 ctcatcaaaa agcattaact caggattcat gcataaactt cttactatgg caattctttg
    14761 cttttgtcct ccgctaagtt ctcttggata agcatgaatt ttatgcaaaa gccccacctt
    14821 ttcaagccaa attttagcct cttttaaaac ctcatctttc tttctttttt gcactttcat
    14881 aggccctaga agtatatttt cttcaacact taaatgctca aaaagctcat aagattgaaa
    14941 aaccatacca actttttgac gcattcttgg ccattcttta aaatctttat ctattttctc
    15001 attatcaata taaatattac cacttgcaat ctcttcaagc ccattaatac aacgcaaaag
    15061 cgtagatttt ccacatccgc taggacctaa aatcaccaca acttctttag ccttaacttc
    15121 taaattaata tcttttaaag catgatgcga accataatac ttttgtaaat tttctatttt
    15181 tagtatactc attttagctc cattttttct ctaattttct tgaatataaa gtgataggat
    15241 aacaaagtat aaaaaagata aaaaaaatca aaccataaat aataaaaggt gcaaaatcat
    15301 ttctattatg aaattctata atttgttgcc ctacttttac aagctctacc gcgccgatta
    15361 aataagcaaa ggttgtactt ttaatcatac gagtaagtaa attcatgctc ataggagtta
    15421 aacgacgcat agcttgtgga ataataacat aagcaaaact ttgcaccgta tttaaaccta
    15481 aagatgatgc actttcatac tgatgttttg gaatactctg caaggaaaca cgcaccaaat
    15541 ccatcatctc aaaacaaccc caaatgctaa aaacaataat agctgcactt acagaactca
    15601 aatcccaccc aaaccatcta ggaaaaccaa aatacaccac aaaaagccat actaaaagtg
    15661 gcataacacg cacaaattct aaacccaaac gacaaaaagc atagatatag gtatttttaa
    15721 aactcattaa aattcctaaa aataacccac ctatcgaagt aataataatg ctgataaatg
    15781 aaatttcaag agtgacaaaa agcccttgcc agagtcttaa aagcgtatcg gtatttaaaa
    15841 gttcaagcat gaagcaacct tttttcaaac tttagcaaaa taaaagacaa aggcaaaata
    15901 atgcataaat atcccataaa caacaaaaac aatagctcat ctgtcttata ggttaaggaa
    15961 tttaaactct tcattaaatt caccaaatct ggcaaggcaa taatactaac gactgaagtt
    16021 tctttgatta aaaatataat attagcacta atacttggca tagaaatagc caaagcttgc
    16081 ggcaaaatca cataacgcaa atttccaaat tttgaaaaac ccaaagaaag tcccgcttca
    16141 aactgctgtt ttcttatggc ttcaaatccc gctcttaaac tttcagccat ataagaacct
    16201 cctaaaaaac taagtcctac tatagcacaa gcaaaagaag gccttaaagt ttcttctacg
    16261 cttaagcaaa tcaaatcaag cggtggaatt tgctctaaat gtatattaaa tttaggtaaa
    16321 gcataatata agaaaaaaag ttgaattaat aaaggcgtat ttcttgaaaa ctctatataa
    16381 agcttgcaaa tattttctaa aatttttatt ttaaaataac tcattaaaat acaaaacaaa
    16441 cctattatca aagaaaaaat aattccaaaa aagcttagtt ttatcgtaag ccaagcagcc
    16501 gttaaaaaag caggagcttg agctaatata aaatcaaaat ccattctcta ccttaaattt
    16561 taccaaagtt ctttcatgat catatcttta tttaaaattt caattctacc tttttttgta
    16621 tcaataagtt ctgaaatttt aagttctttt aacactcgag ataaagattg cgctctaaca
    16681 tttaaatcaa ttgcaatttg tttttgtgaa attgtatcta aatttttttc attttccaaa
    16741 agatacttta ataatctcgt ccttaaatct aatgcatttt gagataattt cttttctaaa
    16801 attttaattt tatcaaaaag tgaactgata agtaaaaaat tgaattcttt attttcactg
    16861 cataaatttt gaaaattaat aaaatcaatt tccaaaattt ctccatcctc ttcaaaaaca
    16921 gcattagcag gataatttaa ttttttaaaa gcaggcattt ctgctataaa atttggagga
    16981 ttaaaataat gcaaagtaat ttctttatca cttgctgtac ttttataaat gcgtattttt
    17041 cccttgagta aa
//
LOCUS       DARBAR010000027        16525 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.027, whole genome shotgun sequence.
ACCESSION   DARBAR010000027 DARBAR010000000
VERSION     DARBAR010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16525
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.027"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            50..958
                     /locus_tag="SB815_000653"
     CDS             50..958
                     /locus_tag="SB815_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEG0906409.1"
                     /translation="MGILKGTLPALLTPYKDDGSINEKEFIRYCEFGISKGLNGLFCN
                     GSAGDSQALSVEEQVKLMKLTKKATKNNIPIITGITSTIYENTFILAQKAYELGLDAL
                     LLAMPYYYKLSEDALFEYVKYLASEVKLPLYVYNIPLFAPALSLKFIEKVSKLDNVVG
                     IKDSSGDALLLNHILDVVPSNFDVFVGREEFYVGALLAGVKGSMTSIGGVFPELMSEI
                     YKSINEKNIGRALLIQKSLLKAIRFGMSIAFPMGFALLLKARGFEFVNASIHPLSPAT
                     KEELNTRFDEAKELIKTIEKETGIKL"
     gene            955..1218
                     /locus_tag="SB815_000654"
     CDS             955..1218
                     /locus_tag="SB815_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEG0906410.1"
                     /translation="MKGYIIVNEKDNVATALRDFKKGEKVANIELLNDIASGHKFALK
                     DIKKDEIIIKYAEAIASASCDISTGEWVHIHNTAGIRGRGDKE"
     gene            1221..2387
                     /locus_tag="SB815_000655"
     CDS             1221..2387
                     /locus_tag="SB815_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEG0906411.1"
                     /translation="MKKIMGYRREDGKFGLRNKVIIIPSVHCANKVCENIARKCNGAV
                     YINHQHGCSQLEFDALQTRDVLIGHGSNANVFGVLIIGLGCEVIQAKAVAEKIKEAMP
                     YKKVEYLVIQECGGSKNTIENGIKIVNEMLESAAKLQKSEGDFSDLILGTECGGSDSY
                     SGLSANPTLGSLSDFVIDEGGAVILAETTELIGCEAILAKRAKNDEIAKKVYDKILAY
                     ENLVKSFHADIRGANPSPGNMAGGLSTIEEKSLGCVYKAGTRTLMDVIDYAKPVVSKG
                     LTFMNTPGNDIEQLSAMVAGGANICVFTTGRGTPTGSAIVPTIKMSSNTFCYENMNDA
                     IDINAGSIIDGVKTKEEVRDELIELIVRISDGELVKAELNEQNDFSVWRLATTC"
     gene            2399..3631
                     /locus_tag="SB815_000656"
     CDS             2399..3631
                     /locus_tag="SB815_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0906412.1"
                     /translation="MKHANSIKLELVCKKISWRILPLIVLMFCLSMLDRTNISFVKSH
                     IEIDAGIGEAAYALGAGIFFIGYAIFEVPSNLFLHKLGAKIWLSRIMITWGLVTMAMI
                     FIQGEISFYVLRFLLGLTEAGFSPGIILYLSYFFPAIYRSKAYGIYQMGVPIAFVFGS
                     LISGFILDYTPNIYFKNWQWMFLIEGGITVLVGIFCLFYLDSHPKDAKWLDIKEKDIL
                     LKHIEISNTKAKDYSIKDIFKSILVWKFVFVYFCIQLSVYGVLFYLPSKIAQILQINV
                     GFEVGLLNAIPWIFVFIALPIFTSLADKKHSWNLHAILFLLLASLSMIASTFVTNLAA
                     FLFFISLAAIGFIVIQPIFWNLPTQVLKGKGAAAAIALIGSLGNLGGFVAPTLKTYIE
                     NHFGVEFGLIVLALIAIL"
     gene            3673..4461
                     /locus_tag="SB815_000657"
     CDS             3673..4461
                     /locus_tag="SB815_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEG0906413.1"
                     /translation="MDLKIKNKVCIITGGAKGIGYGIAKLWASEGGIPVIFSRSMPKE
                     HDKELKKLSSEYEFYEIDLKNYEQIEKLVKKVAIKHGGIYALVNNAGTNDNLHIENTS
                     TQDLIKSYENNLFHYYTMTKECLPYIKKEQGSILNIVSKTGITGQGRTSAYASAKAAQ
                     MGFTREWACAFAKDNVRVNAIAPAEVMTPLYEKWLQNFPNPKEQYEKIAKAIPLGHRF
                     TTIEEIANTAVFTLSPLASHTTGQILMPDGGYVHLDRALNWDEN"
     gene            4472..5728
                     /gene="fucP"
                     /locus_tag="SB815_000658"
     CDS             4472..5728
                     /gene="fucP"
                     /locus_tag="SB815_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HEG0906414.1"
                     /translation="MTDSKNIKIAIVLVTSLFFLWGVSYGLIDVMNKNFQNHLHISQH
                     ESGFLQFAYFGAYFIIALPAGYIANRFSYKMGIIFGLALYAIGALLIIPATNLASFHL
                     FLFAFFILACGIGSLETSANPYMTKLGDEKNASFRINAAQSFNGLGQFVGPIIGGALF
                     LSITKQEEGASKEQIQAALVANMGNVQLVYIGIAVIVILILIAFVANKLPEGSAVSDD
                     YKQKDDSKPIYVFKHRHFNLGLLAQFLYIANQVAAGAFFINYVVEHNEGLKDAQGAYY
                     FSIALVAFMLGRIVSTPLMKIIKGEKILGFYSLINVLICFSLYFASGFFSIVLLIALF
                     FFMSISFPTIFAVATKNLPLNQVKLGGSLLVMSIVGGAIMPIIIGFINDHYGTGAGYL
                     AMAPLFLYVAWYGFIGSKVRKNAKDF"
     gene            5712..6482
                     /locus_tag="SB815_000659"
     CDS             5712..6482
                     /locus_tag="SB815_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG0906415.1"
                     /translation="MQKIFDAHLHLWDLEKIPISWIKDDEKLEQNYDFFRMKQEYKEF
                     EFIGAMYVEVNSDDLEKEALFALEQKKLHNLLFCLADFKHKEELSSFREVMHTSKKGA
                     KRLFEADFEEKIEILKTFNIPFEACIKNEELGFLEKFLSKNPNLKVVLNHLGSPKINR
                     LNEYKKDLSFLKKFQNLYIKLSIPDGFSQETPKEFIFELFAFLKENFSENKFIFGSNY
                     PVAKITPAKWAKLIIESKIFDDLDKIFYKNALLIYKGG"
     gene            6483..6800
                     /locus_tag="SB815_000660"
     CDS             6483..6800
                     /locus_tag="SB815_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HEG0906416.1"
                     /translation="MQRYGQIIKIKKEKIEEYKELHTKPYEGVCEMIKECNIQNYSIY
                     LFGEYLFAYFEYVGADFEADMAKMARDESTQKWWKVTDPCQISLGYAGQKWLNMEEVF
                     HLD"
     gene            6814..8252
                     /gene="aldA"
                     /locus_tag="SB815_000661"
                     /pseudo
     CDS             6814..8252
                     /gene="aldA"
                     /locus_tag="SB815_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874345.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
     gene            8580..8966
                     /locus_tag="SB815_000662"
     CDS             8580..8966
                     /locus_tag="SB815_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEG0906417.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            9036..9506
                     /gene="rpsG"
                     /locus_tag="SB815_000663"
     CDS             9036..9506
                     /gene="rpsG"
                     /locus_tag="SB815_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEG0906418.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            9519..11594
                     /gene="fusA"
                     /locus_tag="SB815_000664"
     CDS             9519..11594
                     /gene="fusA"
                     /locus_tag="SB815_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEG0906419.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            11623..11699
                     /locus_tag="SB815_000665"
     tRNA            11623..11699
                     /locus_tag="SB815_000665"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11657..11659,aa:Arg,seq:cct)
     gene            11717..11866
                     /locus_tag="SB815_000666"
     CDS             11717..11866
                     /locus_tag="SB815_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906420.1"
                     /translation="MIKIAFFITFVISFLAAQSPVNFKEDNNITKERNIFKEQLPKRI
                     KIPTH"
     gene            11872..12573
                     /locus_tag="SB815_000667"
     CDS             11872..12573
                     /locus_tag="SB815_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEG0906421.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIELIEKNLKSNKIQGDIFHDDFNQFQIIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLAKTNSMLKPNGTLYFCYEALALDE
                     ICFILKDMKMKITKLCFVHTYQSKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            12563..12937
                     /locus_tag="SB815_000668"
     CDS             12563..12937
                     /locus_tag="SB815_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEG0906422.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEVLRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVECEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            12910..14187
                     /locus_tag="SB815_000669"
     CDS             12910..14187
                     /locus_tag="SB815_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEG0906423.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKRYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDKQAELDNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGDCKQ
                     AWEILKQTLDDKEFANSDESKAHIKAIKACIKP"
     gene            14184..14960
                     /gene="trpC"
                     /locus_tag="SB815_000670"
     CDS             14184..14960
                     /gene="trpC"
                     /locus_tag="SB815_000670"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEG0906424.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            14970..15455
                     /locus_tag="SB815_000671"
     CDS             14970..15455
                     /locus_tag="SB815_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEG0906425.1"
                     /translation="MQYLYAPWRSEYFEKEKSICPFCDYANKIKSDEELGVIFRAKHC
                     FGVMNRYPYSAGHFMVIPYIHEEHIENLSDEIWQEMSYFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAFHCHYHLVPRWSGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            15445..16443
                     /gene="mnmH"
                     /locus_tag="SB815_000672"
     CDS             15445..16443
                     /gene="mnmH"
                     /locus_tag="SB815_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HEG0906426.1"
                     /translation="MLSEVEFVEFQKENFSFLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKAMGASYICQNTAKHILEITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFALCGNTGCGKTELLEQLPQ
                     AINLEKMANHLGSSFGDILGKQPTQKAFEAELFHNIQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVRRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQKLIVMLLEYYDKTYKKPDKIDLELNTDDILKAKEELLDHFKAQLLF"
BASE COUNT         5808 a         2048 c         3236 g         5433 t
ORIGIN      
        1 ttatattttt tgtatataaa tatatttttg tatatacgaa aggaaaaaaa tgggaatttt
       61 aaaaggaact ttaccggctt tacttactcc atataaagat gatggaagta tcaatgaaaa
      121 agaatttatt cgctattgtg aatttggtat ttctaaaggc ttgaacggat tgttttgtaa
      181 tggaagtgca ggggattctc aagctttgag cgtggaagag caagttaagt taatgaaact
      241 caccaaaaag gctacaaaaa ataatatacc tatcatcacg ggtattacct cgacaattta
      301 tgaaaacact tttattttgg cgcaaaaagc ttatgaatta ggtcttgatg ccttattact
      361 tgctatgcct tattattata aattgagtga agatgcactt tttgaatatg taaaatattt
      421 agcttctgaa gtgaaacttc ccttatatgt ttataatata cctctttttg caccagcact
      481 aagcttaaaa tttatagaaa aggtttcaaa gcttgataat gttgtgggta taaaagatag
      541 tagcggagat gctttgcttt taaatcatat tttagatgta gtacctagta attttgatgt
      601 ttttgtagga agagaagaat tttatgtagg tgcattatta gcaggtgtaa aaggttctat
      661 gactagcata ggtggagttt ttccagaact tatgagcgaa atttacaaat caatcaatga
      721 aaaaaatata ggcagagctt tgctaataca aaaaagttta ttaaaggcca taagatttgg
      781 tatgagcata gcttttccta tgggttttgc tttgctttta aaggccagag gatttgaatt
      841 tgtaaatgct agtattcatc ctttatcacc tgctacaaaa gaagaattaa acactcgctt
      901 tgatgaagca aaagagctta ttaaaactat agaaaaagaa acaggtataa aactatgaaa
      961 ggatatatta tagtcaatga aaaagacaat gttgccacag ctttgcgtga ctttaaaaaa
     1021 ggcgaaaaag tggcaaatat tgagctttta aatgatattg caagcggaca taaatttgca
     1081 ctaaaggata taaaaaaaga tgaaattatt atcaaatacg cagaagctat agctagtgca
     1141 agttgcgata ttagtacagg ggaatgggtg catatccata atactgcggg aattagaggt
     1201 cgtggagata aggaatgaaa atgaaaaaga taatgggtta tagaagggaa gatggaaaat
     1261 ttggcttaag aaataaagtc attatcatac caagtgtaca ttgtgctaat aaagtgtgtg
     1321 aaaatatagc tagaaaatgt aatggagcag tttatatcaa ccatcagcat ggttgctccc
     1381 agcttgaatt tgatgcttta caaactagag atgttttaat aggtcatggg agcaatgcca
     1441 atgtttttgg tgttttaatt atagggcttg gttgtgaggt aatacaagcc aaagcagtag
     1501 cagaaaaaat caaagaagca atgccttata aaaaggttga atatttagtg atacaagaat
     1561 gtggtggtag taaaaatacc attgaaaatg gtatcaaaat agtcaatgaa atgcttgaaa
     1621 gtgctgcaaa attacaaaaa agtgaaggag atttcagtga tttgatttta ggcacagaat
     1681 gcggtggaag tgatagctat agcggactta gtgctaatcc cactttagga agtttgagtg
     1741 attttgtaat cgatgagggt ggtgcggtaa ttttagcaga aactacagaa cttataggtt
     1801 gtgaagccat actagctaag agagcaaaaa acgatgaaat agctaaaaag gtatatgata
     1861 agattttagc ttatgagaat ttagtcaaat cttttcatgc tgatattcga ggagcaaatc
     1921 ctagcccagg aaatatggca ggcgggctta gtactataga ggaaaaatct ttaggctgtg
     1981 tttataaggc aggaactaga accttaatgg atgtgattga ttatgctaag cctgtagttt
     2041 ctaaaggttt aacttttatg aatacaccag gcaatgatat agaacaactt agtgctatgg
     2101 ttgcaggtgg agcaaatatt tgtgttttta ctacaggtcg tggcactcca acgggttctg
     2161 ctatcgtgcc tactatcaaa atgagttcta atactttttg ttatgaaaat atgaatgatg
     2221 ctattgatat taacgcagga agcattatag atggggtaaa aacaaaagaa gaagtgcgtg
     2281 atgagcttat agaattaatc gtgcgaattt cagatggaga attggtaaaa gcagagctta
     2341 acgagcaaaa tgatttttca gtttggagac ttgctacaac ttgttaaagg gtaaagtgat
     2401 gaaacatgca aattcaataa agttagagtt agtatgtaaa aaaatatctt ggcgtatttt
     2461 gcctttgatt gttttgatgt tttgtctttc tatgcttgat aggacaaata ttagctttgt
     2521 gaaatctcat atagaaattg atgcaggcat cggtgaggct gcttatgctt tgggtgctgg
     2581 aatatttttt ataggttatg ccatttttga agtgccttca aatttatttt tgcataaatt
     2641 aggagcaaaa atttggttga gccgtataat gatcacttgg ggtcttgtaa ctatggcaat
     2701 gatttttata caaggagaaa taagttttta tgtattaaga tttttattgg gtttaactga
     2761 agcaggtttt agtccaggca ttattttata ccttagttat tttttcccag ctatatatcg
     2821 atctaaggct tatggaattt atcaaatggg agttccaatt gcttttgttt ttggttcttt
     2881 aattagcggt tttatacttg attatacacc aaatatatat tttaaaaatt ggcaatggat
     2941 gtttttaata gaaggaggta ttaccgtttt agtaggtatt ttttgtttat tttatcttga
     3001 ttcacatcca aaagatgcaa aatggttaga tataaaagaa aaagatattt tgctaaaaca
     3061 tattgaaatt tccaatacta aagctaagga ttattctata aaagatattt ttaaaagtat
     3121 tttggtgtgg aaatttgtat ttgtttattt ttgtattcaa ttaagtgttt atggagtgct
     3181 tttttattta ccaagtaaaa ttgcccaaat attgcaaata aatgtaggtt ttgaagttgg
     3241 acttttaaat gccatacctt ggatttttgt ttttatcgcc ttgccaatat ttacctcatt
     3301 ggctgataaa aaacattctt ggaatttaca tgcgatttta tttttactgc tagcaagttt
     3361 gagcatgata gcttcaactt ttgttacaaa tttggcggca tttttatttt ttattagctt
     3421 ggctgctata ggttttatag tcattcagcc tatattttgg aatttgccaa ctcaagtttt
     3481 aaaaggaaaa ggagccgcgg ctgctattgc tcttatagga tccttgggaa atttaggagg
     3541 ttttgtagct cctactttaa aaacatatat agaaaatcat tttggagttg agtttggact
     3601 tatagtgtta gcattgatag caattttata atacatttaa aaataacttt aaatttagat
     3661 aaaggagaat aaatggattt aaaaattaaa aataaggttt gtattattac aggaggggct
     3721 aaaggtattg ggtatggtat tgctaaatta tgggcaagcg aaggcggaat tcctgtaatt
     3781 ttttcaagat ctatgcctaa agagcacgat aaagaattaa aaaaattatc tagtgagtat
     3841 gaattttatg aaattgattt aaaaaattat gagcaaattg aaaagcttgt aaaaaaagtt
     3901 gctatcaaac atggtggaat ctatgctctt gtaaataatg caggtacaaa tgataattta
     3961 catattgaaa atacaagtac tcaagatttg ataaaatctt atgaaaataa tctttttcat
     4021 tattatacta tgaccaaaga atgtttgcct tacattaaaa aagaacaagg cagtatttta
     4081 aatatagtga gtaaaacagg catcacagga caaggaagaa cttcagctta tgcttcggcc
     4141 aaagcggctc aaatgggttt tactagagaa tgggcttgtg cttttgctaa ggataatgtt
     4201 agggtaaatg ctatagctcc tgctgaagtt atgactcctc tttatgaaaa atggctgcaa
     4261 aattttccta atcctaaaga gcaatatgaa aaaatcgcaa aagctatacc tttaggccat
     4321 cgttttacta ccatagagga aattgcaaat acagcggttt ttacacttag tccccttgct
     4381 tcacatacta cagggcaaat tttaatgcca gatggaggtt atgtgcattt agatagagca
     4441 ttaaattggg atgaaaacta aggagtaaaa aatgactgat tctaaaaata taaaaatagc
     4501 tattgttttg gtaacttctc ttttcttttt atggggagta agctatggac ttattgatgt
     4561 gatgaataaa aattttcaaa atcatcttca tattagccag catgaaagtg gctttttaca
     4621 gtttgcttat tttggtgctt attttatcat agccttaccc gcaggttata tagccaatag
     4681 attttcttat aaaatgggaa tcatttttgg cttagctctt tatgccatag gagctttgct
     4741 tattatacct gctacaaatt tggcttcttt tcatttgttt ttgtttgcgt tttttatttt
     4801 agcttgtggt attggttctt tagaaactag tgcaaatccc tacatgacaa agcttggtga
     4861 tgaaaaaaat gcgagtttta gaatcaatgc tgcgcaaagt tttaatggtt tggggcaatt
     4921 tgtaggacct attataggcg gagctttatt tttatctatt actaaacaag aagagggtgc
     4981 gagtaaagag caaatccagg ctgcattggt agctaatatg ggaaatgtcc agcttgttta
     5041 tataggaatt gctgtcattg ttattttgat tttaattgct tttgttgcaa ataagcttcc
     5101 agaaggaagt gcggtaagtg atgattataa gcaaaaagat gattctaagc ccatatatgt
     5161 ttttaaacac agacatttta acttagggct tttagcgcag tttttgtata tagccaatca
     5221 agttgcagca ggagcttttt ttatcaatta tgttgtagaa cataatgaag gtttaaaaga
     5281 tgcgcaaggt gcttattatt tttctatagc tttggttgca tttatgctag ggcgcattgt
     5341 ttctactcct ttgatgaaga taatcaaagg tgaaaaaatt ttaggatttt attctctaat
     5401 caatgtgctt atatgcttta gcttgtattt tgctagcggg ttttttagca tagtgctttt
     5461 aatagcttta tttttcttta tgtctatttc ttttcctact atttttgcgg tagcaacaaa
     5521 aaatttacct ttaaatcaag taaaactagg cggttctttg cttgtgatga gcatagtagg
     5581 tggagcaatt atgcctataa ttataggttt tattaatgat cattatggta caggcgctgg
     5641 gtatttagca atggcacctt tgtttttata tgtggcttgg tatggcttta taggctcaaa
     5701 agtgagaaaa aatgcaaaag atttttgatg ctcatctaca cctttgggat ttggaaaaaa
     5761 tacctatttc atggataaaa gacgatgaaa aattagagca aaattatgat ttttttagga
     5821 tgaaacaaga atataaagaa tttgaattta taggtgctat gtatgttgag gttaatagtg
     5881 atgatttaga aaaggaagct ttgtttgctt tggagcaaaa aaagcttcat aatcttttgt
     5941 tttgtttagc ggattttaag cataaagaag agcttagttc ttttagggaa gtaatgcaca
     6001 cgagcaaaaa aggagctaaa agactatttg aagcagactt tgaagaaaaa atagaaattt
     6061 taaaaacttt caatatacct tttgaggctt gtattaaaaa tgaagagctt ggttttttag
     6121 aaaaattttt aagtaaaaat ccaaatttaa aagtggtttt aaatcatcta ggaagtccaa
     6181 aaataaatcg tttaaatgaa tacaaaaaag atttaagttt tttgaaaaaa tttcaaaatt
     6241 tatatatcaa gctttctatt cctgatggtt tttcgcaaga aactcctaag gaatttattt
     6301 ttgagctttt tgctttttta aaagaaaatt ttagtgagaa taaatttata tttgggagca
     6361 attatccagt ggcaaagata actccagcta agtgggccaa gcttattata gagagtaaaa
     6421 tttttgatga tctagataaa atattttaca aaaatgcttt attaatttat aaaggaggat
     6481 gaatgcaaag atacggtcaa atcataaaaa taaaaaaaga aaaaatagaa gaatacaaag
     6541 agcttcacac aaagccttat gaaggggttt gtgagatgat taaggaatgc aatatacaaa
     6601 attattccat ttatttgttt ggggaatatt tatttgcata ttttgaatat gtgggtgctg
     6661 attttgaagc agacatggct aaaatggcaa gagatgaaag cacacaaaaa tggtggaaag
     6721 taacagatcc ttgtcaaata tctttaggct atgcaggaca aaaatggcta aatatggaag
     6781 aagtatttca cttagactaa aaaaggagaa aaaatgacaa cttatttaaa ttatattgat
     6841 ggaaagttta tcccacataa tggagaattt atcgaagttt taaatccagc tactaaagaa
     6901 gtaatttcaa aagtagctag cgcttcttta gaagatacta aaagagcgat tgaagcagcc
     6961 aaaaaagcac aaaaagtttg ggaggctaaa ccagcgattg aaagagcaaa tcatttaaaa
     7021 gaaatagcta gttaatacgc aaaaatgcta atttcttaac cgaagtttta atgcaagagc
     7081 aaggaaaaac cagagttttg gctagcatag agattaattt tacagcagat tatatggatt
     7141 atacggccga atgggctaga agatatgagg gtgaaatcat acaaagcgat agggctaatg
     7201 agcatatata tttatataaa agtgctattg gggtaattgg tggaatttta ccttggaatt
     7261 ttccattttt cttaatcgca aggaagatgg cacctgcttt actaacagga aatactattg
     7321 ttataaagcc aagcagtgaa actccaaaca atgcttttga atttgcaaag cttgtttcgc
     7381 aaagttcttt accaaaaggt gtttttaact tagttgcagg taaaggcagt gtagtaggat
     7441 atgaattatc aagcaatgaa aatataggta tggtaagtct tacaggaagt gttgaagcag
     7501 ggactagagt aatggaagct gcagctaaaa atattatcaa agtttcttta gaacttggtg
     7561 gaaaggcgcc agctatagtg tgcaaagatg cggatattga tttagcagta gaagcgatta
     7621 aagcaagtcg aatttgcaat aacggacaag tttgtaattg tgctgaaaga gcttatgtgc
     7681 atacaagcgt ttatgatgaa tttgtagaca aatttgtaaa agccatgagt aaagtaagtg
     7741 ttggaaatac cttaaaaggt gattttgata tgggaccatt ggtcaatcaa gcaggagttg
     7801 ataatgcttt ggcaatgctt caaagagcta cagctaaagg agcgattgta gaatgtggtg
     7861 gaaaaatcac tgatacaagt gggtattatt ttcccgcaag cgttcttact aatgttaaac
     7921 acgaagatga gatcatgcaa aaagaaattt ttgctccgat tttacctatt gctaaatttg
     7981 atacacttga tgaagttatt gatatggcaa atgattgtga atatggtctt acaagttcta
     8041 tttatacaca aaatttagat atagcaatga gagctagcag agaaattaaa tttggtgaaa
     8101 cttatattaa tcgtgaaaat tttgaggcta tgcaaggttt tcatgcaggc tttagaaaaa
     8161 gtggcatagg cggagctgat ggaaaacatg gtcttgaaga atatttagct acccatgtgg
     8221 tatatttgca gtataatact aataaacaat gatttttatc ctatctaaat ttttagatag
     8281 gagttattat aatcttggaa tcaagtatga tgctttataa ctatggatta aacacttttt
     8341 tagtaatttc ttaaaatcaa ttttggaatt tttcattttg tctaaaatga gtaagattat
     8401 ttttataagt aaaacaataa ttaaaaatta gtttatgttt tataaatatt aatgtaaatt
     8461 atgtaggttt attttataaa aatttttaaa agcatttaaa ttatttctag tttatatttt
     8521 tgtaagtaaa ttttagatat catccaaagt ttattacatt tttaaagaaa ggaattattg
     8581 tgcctaccat aaatcaattg gttagaaaag agcgcaaaaa agttttagaa aaatctaaat
     8641 ctccagcgct taaaaattgt ccacaaagaa ggggagtttg cactagggtt tatactacaa
     8701 cacctaaaaa accaaactca gcgttaagaa aagttgccaa agtaagactt actagtggct
     8761 ttgaagtgat cagctatatc ggcggtgaag gtcataactt gcaagaacac agcattgttt
     8821 tagtgcgtgg tggtagggta aaagacttac caggggttaa atatcacatc gttcgtggtg
     8881 ctcttgatac agcaggtgtt gcaaaaagaa cagtttctcg ttctaaatat ggtgctaaac
     8941 gtcctaaagc aggcgctgca aaataatcat tcatacagac aaatccgtta gatttgattt
     9001 tgtttgagta aaatttaaaa tttgaaggaa aaataatgag aagaagaaaa gctccggtaa
     9061 gagaagtctt gcctgatccg atttatggta ataaagtaat cacaaaattt attaattctt
     9121 taatgtatga tggtaaaaaa agcacagcta caacaattat gtatggtgct ttggaagcta
     9181 ttgataaaaa aggtggtgag aaaaaaggta ttgatatttt taatgatgcg attgaaaata
     9241 ttaagccttt attagaagtg aaatctcgtc gtgtaggtgg tgcaacctat caagttccag
     9301 ttgaagttcg tcctgctaga caacaagctt tggcgattcg ttggattatt tcttttgcaa
     9361 gaaaaagaag tgaaagaact atgatagaca aacttgcagc tgagctttta gatgcagcaa
     9421 atagcaaagg tgcttcattt aagaagaaag aagatactta taaaatggct gaagcaaata
     9481 aagcatttgc tcactatcgt tggtaagaag gagtgtgtat gtcaagaagt actcctttaa
     9541 aaaaagttag aaatatcggt attgctgctc acatcgatgc gggtaaaacg actacatctg
     9601 aaagaattct tttctttact ggtatgagtc ataaaatcgg tgaagttcat gatggtgctg
     9661 caactatgga ctggatggaa caagagaaag agcgtgggat tactatcact tctgcggcta
     9721 caacttgttt ttggaaagat catcaaatca atcttattga cactccaggc cacgtggatt
     9781 ttacaattga agttgaaaga tctatgcgtg ttcttgatgg tgctgttgcg gtattttgtt
     9841 cagtgggtgg ggtgcagcct caaagtgaaa cagtttggag acaagcaaat aaatatggtg
     9901 ttccaagaat agtatttgta aacaaaatgg atagaatcgg tgcaaatttc tacaatgtag
     9961 aagatcaaat tcgcaaccgt ttaaaagcta atccagttcc acttcaaatt ccaatcggtg
    10021 ctgaggataa ttttaaaggc gtaatcgatc ttgtaactat gaaagcttta gtttgggaag
    10081 atgatactaa gccaacggat tatgtagaaa aagaaattcc agctgaactt aaagaaaagg
    10141 cagaagaata tcgcacaaaa atgatagaag cagtttctga aacttcagat gagttgatgg
    10201 aaaaatattt aggcggagaa gaattaagcc ttgaagagat taaaacaggg attaaagcag
    10261 gatgtttaag tctttctatc gttcctatgc tttgcggtac agcgtttaaa aataaagggg
    10321 ttcaaccttt acttgatgct gttgtggctt atttaccagc tcctgatgaa gtggcaaata
    10381 tcaagggtga atatgaagat ggcacagaag tttctgtaaa atcaactgat gatggcgagt
    10441 ttgcaggact tgcatttaaa attatgacag atccatttgt aggacaactt actttcgtgc
    10501 gtgtttatcg cggttgttta gaaagtggtt cttatgctta taactcaact aaagataaaa
    10561 aagaaagaat tggtcgtttg ttaaaaatgc actctaacaa aagagaagag attaaagtgc
    10621 tttacgcagg cgaaattggt gctgttgtag gacttaaaga tactttaaca ggggatactc
    10681 ttgcaagtga aaaagataag gtaatccttg aaagaatgga ttttccagat ccagttattt
    10741 ctgttgcagt tgagccaaaa actaaagcag atcaagaaaa aatgtctatt gctttaaata
    10801 aattagcaca agaagatcca agttttagag tttctacaga tgaagaaagt ggccaaacta
    10861 tcatttcagg tatgggtgag ttgcaccttg aaattatcgt tgatagaatg cttcgtgaat
    10921 ttaaagttga agctgaagta ggtcaaccac aagttgctta tcgcgaaact attagaaaaa
    10981 ctgttgaaca agaatacaaa tacgctaaac aatcaggtgg tcgtggtcag tatggacatg
    11041 tattcttacg ccttgaacca cttgagccag gtagtggata tgaatttgtt aatgatatca
    11101 aaggtggagt aattccaaaa gaatacattc ctgcagttga taaaggtgtt caagaagcat
    11161 tacaaaatgg tgttttagca ggttatcctg tggaagatgt taaagtaact gtttatgatg
    11221 gaagttatca cgaggtggat tcatctgaga tggcgtttaa acttgctgct tctatgggct
    11281 ttaaagaagg tgctagaaaa gcaggtgctg tgatcttaga gcctatgatg aaagttgaag
    11341 tagaaactcc cgaagattat atgggtgatg ttattggaga tcttaacaaa cgccgtggtc
    11401 aagtaaatag catggatgag cgtggtggaa ataaaatcat cacagcattt tgtcctttgg
    11461 ctgaaatgtt tggttattct actgatctta gaagtcaaac tcaaggtcgt gcgacttatt
    11521 ctatggaatt tgatcactat gatgaagttc ctaaaaatgt tgcagatgaa atcatcaaaa
    11581 aaagaaacgg ttaaattttt agcgggattt ttcccgcttt ctgtcctcgt agctcagcag
    11641 gatagagcgc aaaattccta attttgaggc cgtgagttcg aatctcgccg tggacaccat
    11701 tttatggggt gttattatga taaaaattgc tttttttata acttttgtaa tttctttttt
    11761 ggcagcacaa agcccagtaa attttaaaga agataataat ataacaaaag aacgaaatat
    11821 atttaaagaa cagcttccaa aacgcattaa aattccaacg cattaaaata tatgtcagat
    11881 ctgattacgc tagcacaatt atcacaaggg tatcgttaca atagtgattc tttaatttta
    11941 gctgatttta ttttaaaaca aggaattaaa ggcgctgttt ttgatgtagg tgcgggctgt
    12001 ggtatcatag gtattttact taaaaaaaat attgcaaatt taagtttatc tttgattgat
    12061 attcaaaaag aaaatataga attgattgaa aaaaatttaa aatccaacaa aatacaaggc
    12121 gatatttttc atgatgattt taatcaattt caaatcataa aaaaatttga cttcatagtt
    12181 tgcaatcctc cattttatag acaaggagct tacaagagtg aagatcagca taaagctata
    12241 agtaaatttc aggaattttt acccttgcat agctttttag ctaaaacaaa ttctatgctt
    12301 aagccaaatg gtactttgta tttttgctat gaagctttag ctttagatga aatttgtttt
    12361 attttaaaag atatgaaaat gaaaataaca aagctttgct ttgtacatac atatcaaagc
    12421 aaaaaagcaa gacttgtttt gatacaggta aaaaaaggtt caaaatcgcc ttgtgagatt
    12481 ttacctcctt tttttgtata tgaaaatgaa attttaagca aacaaatgca agaaattcac
    12541 ttaagattta ggttaaaaag ttatgatatt tgataaaaat ttttcttatg cttttgatga
    12601 aaatgcttgt gagaaatgcg gtggaaagtg ttgcactgga gaaagtggca atatttttgc
    12661 gagcaaggaa gaattagaag tattaagaaa gcatttaaat ttagaaagca aagaatttgc
    12721 tgaaaaatac ttgagaaaag tgggctttaa aatgagtttt aaggaagtcg aatgtgaaga
    12781 tggttttgct tgcatttttt ttgatactca aaaaagaaat tgtagtatct acgattttcg
    12841 tccaaaacaa tgcagaactt ttccattttg ggaatatttt aaaacacatc aaaaggaatt
    12901 agaaaaagaa tgtataggta tttgttattt gtcttagcag cctttttttt ggcagcttgt
    12961 ggaagttcaa aaatcaatgt tgtttatcct gattatacaa aatataaaag caatgatttt
    13021 gatttaaggg ttatgaaggc ttataattat gagtattata aacgatacaa agaagccaga
    13081 gatgaatttt taagtcttta tcaagattat aataatacta attttttaga aaatgcattt
    13141 ttacttactt tagcaaacaa tcttgacaag caagcagagt tagataatct agcaaagcct
    13201 tatttaaatc aaaatgacaa tcttaagcga cttagtgctc tttatgcttt aaattcaaat
    13261 gatatcaaca atgctcaaaa acttatgaaa gagcttttaa caaaaaagga tagtgatcct
    13321 agaaatttag agctttacgg agatattttg gttaaaaaaa atgatttaaa aaatgctaca
    13381 aaatactata gatctgctta taatcaagtg caaaatgaag aaattttatt taaactcata
    13441 ggaatttatg cgattttgaa tgatacttta aatattaaaa atgttttaga attttcaaga
    13501 aaaaccaatg gttgcactct caaaacttgc gtcttgcttg ctaaaattta ttttgatgaa
    13561 aaaaatatcg aagctttaaa aagtatatat aaagagcttt atcaacttac caaaaataaa
    13621 agttttgtat tggctttagt tgagctttta aattctcaag gcaaaacaga agaagcttta
    13681 aaaatttctt tgcagtatga tttagatgat gacattaaac tcgctttgta tcagaattta
    13741 aaacgctttg atgatgctaa aaaaatgagt ttagctcttt atcataaaac aaaaaataaa
    13801 gaatatcttc tacgagcggc agtttttgaa tttgaagctg caaatgaagc taaaaaaatc
    13861 actccaaaag taattgattc tgtaaaagaa aaattcgaac aggctatcga taaagatagc
    13921 aatgctttgt atttaaacta ctatggatat ttgcttatag attatgattt agatgttaaa
    13981 aaaggtatag agcttgtgaa acttgcctta gaaaaagatc cacagaattt gtattattta
    14041 gattctttag cttgggggta ttataaacta ggcgattgta agcaagcatg ggaaatttta
    14101 aaacaaacat tagatgataa agaatttgca aattctgatg agagcaaagc tcatataaaa
    14161 gcgataaagg cgtgtataaa accatgatat tggataaaat ttttgaaaaa acaaaagaag
    14221 atttaaaaga acgcaaacta aaacttcctt atgatatgtt agggcgttct ttagcttcaa
    14281 atcctttctt tccaaaagat gtgattaagg ctttaaaaag agtagaaaaa gaagttaaaa
    14341 tcatagcaga agtaaaaaaa gcaagcccta gcaagggagt cattagagaa gactttgatc
    14401 ctttgagtat cgctttaaat tatgagaaga acaaagctgc ggcgatttct gttttaactg
    14461 agccgcattt ttttaaaggt tctttagaat acttaagtct tatacgccgt tatacgcaaa
    14521 ttcctttact tagaaaagat tttatctttg atgagtatca aattttagaa gctttggttt
    14581 atggggcgga ttttgtatta ttaatcgcta aaatgctaag catgaaagag cttaaaaaac
    14641 tgcttgagtt tgcaagacat ttaggtcttg aggctttggt tgaaattcat gataaagagg
    14701 atttgagtaa ggctattttt gctggagcgg atatcattgg tatcaatcat cgtaatttag
    14761 aggattttac tatggatatg agtttgtgcg aaaaacttat cccacaaatc ccaaattcaa
    14821 aaatcatcat cgcagaaagt ggtttagaaa ataaagaatt tttagagcat ttgcaaaatt
    14881 taggcgttga tgctttttta atcggcgaat attttatgcg cgaaaaagat gaaggaaagg
    14941 ctttaaaagc tttgctttaa ggagggaaaa tgcagtattt gtatgcacca tggcggagtg
    15001 agtattttga aaaagaaaaa agcatttgtc cattttgtga ttatgctaat aagatcaaaa
    15061 gcgatgaaga attaggcgtg atttttagag caaagcattg ttttggagtg atgaaccgct
    15121 atccttattc tgcagggcat tttatggtga ttccttatat acatgaagag catatagaaa
    15181 atttaagtga tgaaatttgg caagaaatga gttattttgt gcgtttgggg gtaaaaattt
    15241 taaaagagca aattcatgca aatggagtga atatcggtat gaatttaagc aaggatgcag
    15301 gagctggcat agcttttcat tgtcattatc atctagtgcc acgctggtca ggagatacaa
    15361 attttatcac aaccatagga gaaactaggg tttgtggcac taatatagag caagtttatc
    15421 aaaaacttgt tttggctttt aaaaatgctc agtgaagttg aatttgtaga gtttcaaaaa
    15481 gaaaatttct cttttttaat cgatgcaaga agccctagag aatttttgca ttctcacttg
    15541 ataggagctt taaattttta tgcactcaat gatgaagaat atcaagaaat aggaacaatt
    15601 tataagaaaa atcaagcttt agctaaggct atgggtgcga gttatatttg tcaaaatacc
    15661 gctaagcata tattagaaat cactcaaaat tttcgcatag gagaaaaggt ggggatttat
    15721 tgttctcgtg ggggtttgcg ttcaaagtct atcgcagtga ttttaagtga gcttggcttt
    15781 agggtggtgc gtttaaaagg tgggtttaaa gcttatagaa cttttgtaac gcattatttc
    15841 gaaaatgaaa taaattttga tttttttgct ctttgtggta atacaggttg tggaaaaaca
    15901 gagcttttag aacaactccc acaagctata aatttagaaa aaatggcaaa tcatttaggc
    15961 tcgtcttttg gtgatatttt aggaaaacaa cctacgcaaa aagcttttga agcagaactt
    16021 tttcacaata ttcaaaattt agaaaatttt gctttcatag aaagcgaaag tcgcaaaata
    16081 ggggatatta tcttaccttt gaaattttat gaaaaaatgc aaaaggcttt taaaatttat
    16141 tgtttttgtt ctttggaaaa tcgcgttaga agaatacaaa aaatttatca agaaaaaatg
    16201 actcctttga aatttcaaca atgtgtgcaa aaaatcagtc cttatatcag cttaaattta
    16261 cgccaagatt tgcttcaaag ttatgagaga aaagaatggc aaaagcttat tgttatgctt
    16321 ttggagtatt atgataaaac ttataaaaaa ccagataaga ttgatcttga gttaaatact
    16381 gatgatattt taaaagctaa agaagagctt ttagatcatt ttaaagcaca attacttttt
    16441 taatatcaga taattttatt aaataatcaa attttttctt cattatcttg taataatcct
    16501 ttttatcttt gttgtttttt aactt
//
LOCUS       DARBAR010000028        15945 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.028, whole genome shotgun sequence.
ACCESSION   DARBAR010000028 DARBAR010000000
VERSION     DARBAR010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15945)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15945)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15945
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.028"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(42..2408)
                     /locus_tag="SB815_000673"
     CDS             complement(42..2408)
                     /locus_tag="SB815_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HEG0906427.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIAGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSIRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLKTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRA
                     RALYIQALTYERMQNIQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
     gene            complement(2430..3818)
                     /locus_tag="SB815_000674"
     CDS             complement(2430..3818)
                     /locus_tag="SB815_000674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEG0906428.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLALIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTVILNGYWYLALFVALSSVIMLYAYLKILIHVLFMKNDRVYNIKFSFIQNFILAFC
                     VCVSTFAILLML"
     gene            complement(3808..5295)
                     /locus_tag="SB815_000675"
     CDS             complement(3808..5295)
                     /locus_tag="SB815_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEG0906429.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLILLSSLMIFLSFLFLKLEQKALISC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPILVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLLFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            complement(5297..7087)
                     /gene="nuoL"
                     /locus_tag="SB815_000676"
     CDS             complement(5297..7087)
                     /gene="nuoL"
                     /locus_tag="SB815_000676"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEG0906430.1"
                     /translation="MQNLALISLFSPFIAFLFASCFALSEKKQFVGIICSLLVALSAF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNATYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGAILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPQFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQNIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            complement(7089..7385)
                     /gene="nuoK"
                     /locus_tag="SB815_000677"
     CDS             complement(7089..7385)
                     /gene="nuoK"
                     /locus_tag="SB815_000677"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEG0906431.1"
                     /translation="MIEKYFFIAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            complement(7382..7900)
                     /locus_tag="SB815_000678"
     CDS             complement(7382..7900)
                     /locus_tag="SB815_000678"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEG0906432.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLAMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     VLTHKELTKEKQ"
     gene            complement(7897..8538)
                     /gene="nuoI"
                     /locus_tag="SB815_000679"
     CDS             complement(7897..8538)
                     /gene="nuoI"
                     /locus_tag="SB815_000679"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEG0906433.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVENYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDAMLESALENQNTQEQGENK"
     gene            complement(8548..9546)
                     /gene="nuoH"
                     /locus_tag="SB815_000680"
     CDS             complement(8548..9546)
                     /gene="nuoH"
                     /locus_tag="SB815_000680"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HEG0906434.1"
                     /translation="MSDFAFFALEALIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFVSLAAIPMLP
                     EFTLFGKVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVAII
                     SYESVGALALIAIVMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALTVLL"
     gene            complement(9539..12001)
                     /locus_tag="SB815_000681"
     CDS             complement(9539..12001)
                     /locus_tag="SB815_000681"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HEG0906435.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFIPHIHKNGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKKIIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVVGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAIICDLDKNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKDFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLAVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            complement(11998..12690)
                     /locus_tag="SB815_000682"
     CDS             complement(11998..12690)
                     /locus_tag="SB815_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906436.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKEVKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSFKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            complement(12687..12914)
                     /locus_tag="SB815_000683"
     CDS             complement(12687..12914)
                     /locus_tag="SB815_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HEG0906437.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            complement(12911..14137)
                     /gene="nuoD"
                     /locus_tag="SB815_000684"
     CDS             complement(12911..14137)
                     /gene="nuoD"
                     /locus_tag="SB815_000684"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HEG0906438.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTSPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(14139..14933)
                     /locus_tag="SB815_000685"
     CDS             complement(14139..14933)
                     /locus_tag="SB815_000685"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEG0906439.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIADKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            complement(14930..15433)
                     /locus_tag="SB815_000686"
     CDS             complement(14930..15433)
                     /locus_tag="SB815_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HEG0906440.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLI"
     gene            complement(15415..15804)
                     /locus_tag="SB815_000687"
     CDS             complement(15415..15804)
                     /locus_tag="SB815_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HEG0906441.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGFLE
                     VFVFIVLLGVGFLYAYKKGAFAWQSIK"
BASE COUNT         5966 a         3024 c         1899 g         5056 t
ORIGIN      
        1 cttagataac tagccaaaaa gctagttatc tctaaattta cttattgatt taaaatttga
       61 tttttactct tacataaatt ctgccaattt gaagcacttt tgatttcaag acattgtttt
      121 aaactttctt tttcagcttg tatattttgc attctttcat aagttaaggc ttggatatat
      181 aaagctcttg ctctatcttc atctgaaagt tttaatttaa gtaaatctgt taaaacagct
      241 aaactttctt catttttatt gattttagtc aaagcatcaa gatatataaa ttctaaatta
      301 ggactaaaaa gatttatacc tttaaaattt tgatagtcaa tggccttagg tgcgtaagtt
      361 aaaatcgttg tttgcatatt atgatcatta gcgtaagaaa gtaaagcatc ataagcttcc
      421 accatactaa aattcattgg aaaactttct aaaatttgca aaattttaat ggcttgattg
      481 tagtcattta aacgcaataa agataaaaat tgcaaataat aagccttaaa attctcatca
      541 tcacttttta aaattctaga attagctata tctttagaaa ttttaatcac ctgaggatat
      601 tgtttattgt caaaaagaat agatgctttt tgaagaccat aaaatataga atcttcatta
      661 taatttttat ctatataatc aagtgcttgt tcaacattag aagttctgat aagacaagct
      721 aacatttgtt ttttattctc aattttctga cctatatcat aagcactaaa acgcataaaa
      781 atatttgcag cattgataca attatcagct tttatcgcat tttttaaatc attaatggct
      841 gctttctcta aaaattgagt agcatttgga atttttttac tttctataag atctttataa
      901 gctaaaatag cactaaaatt tccctcttta taataaagtg caacatcttc atctaaagct
      961 ttatttgcaa tattctcatc tttatttgca tattgcttca ttaaatctgt ataacgctga
     1021 tgcaaaaagc ttgcattatt atcacctaaa gcaaagaata cctcatcact tgctttttta
     1081 atttcatcta aatacttacc atctaaataa tcatccatat acaaatcaag gtatttttta
     1141 gcatcactag atctgttagc atgtgataaa accaaggcta aatcttttaa agtttcttca
     1201 taacttggat caagtttgga cattttagca aaggcatctt cataaatact tgcacttata
     1261 tcaaattgtc ctttttgatt aaataattta gcaagttcta aagatcttgg aatatctttt
     1321 ccaaaatatt caggattggc ttttaaaatg gtattaatat attctatagc tttatttact
     1381 tgctcatttg aaagcaaatt ctttgccaaa ctcatagctg ctcttgcagc taaatctaaa
     1441 ttttttgtat taaaataagt attttcataa atatttacag ctttttcttt ttcatttaaa
     1501 ttataaatat agtctgcata atcaagtttt gataactgag taaaataatt attaggttgt
     1561 tcattatcca aaatcgacat tgtatactct acatcagcac gctgagctaa agcgatataa
     1621 gtttttaaca ttatatgtaa aacttctgaa aaatttttat cacttgtaaa agtacgcgtc
     1681 caatttttag catcatcaat catcttttct aaaatttgct gatcgcgtat acttggatct
     1741 tgagtgtaaa gtttattttg agctcttaat ttatatagta taaattcact agtaaaaata
     1801 ctgccacgat atctattgat agcattttgt gcatcaatca ccacttgatt gtaattagcc
     1861 ttatcgtatt cttttttgat gcgtaaataa gtattgatat ctgcactttg aggaataaca
     1921 acaggatcag aatttaaatc caaagctcca acataaggca aactctcatg tggaaaattg
     1981 atattaaaat caagtccatc atagtcttta ataggtgcta gttctggtgt aaaaataaaa
     2041 gtaaaagcct tacttttatg cgaacttgat gaactgagtt ctttatctat ataaatattt
     2101 tgagaagtgt caaacattct tgcttgtatt tttggcaaaa tgatcatttt aattttttga
     2161 gcttcttgta taaattttaa atcaaaagca gaaaaactct gatcttttaa tttattatca
     2221 accatacctg caatatcaca ttcaaaatga acttttgctt cggtaataaa tttttgacat
     2281 gtaaattcta aatcattact cgcatgtaaa actgcaaaag cttgattatt ttcgcgaccc
     2341 gtgtttaaaa caagctcaaa agcaaaagca tttaaaaaac ttaataaaat taaaaataat
     2401 attctcataa aataattata gcaaaactct tataacatta acaatatagc aaaagtgctt
     2461 acacaaacac aaaaagctaa aataaaattt tgtataaaac taaacttaat attataaacc
     2521 ctatcatttt tcataaataa aacatgaatt aaaatcttta aatacgcata aagcataata
     2581 acagaagata aagccacaaa aagcgccaaa taccaatatc catttaaaat tactgtattt
     2641 aaaatcataa atttacccca aaatactcca aaaggcggaa tacctgctaa agaaagcaca
     2701 ctaatgctta aacaaaaagc aattaaaggt tttttaacca aaagcccatt taaactctca
     2761 taagaattat tctcataatt acttaaaatc ataaatacag cataatttgc aaaagcaaat
     2821 aaagtccaat atccaaaaat agcaagcaaa attccatcaa aattttgttc ttttaataaa
     2881 ggaatgcaag ctaccaaaac caaagaagaa tgcactacag aactataagc aaacattttt
     2941 ttgatattgt tttgacttag agccgcaaaa gcacctataa gcatagaaaa aatcgctaga
     3001 actattatga tatattcaaa acctgtatta tttaaaaaat caaacaaacg aataaccaca
     3061 accaacatgg caacttttgg cacaactgaa ataaaagcaa ccaaatttgt atgtgctgca
     3121 taatacacat ctttaagcca aaaatgaaaa ggtgccaaag aaagcttgat tgcacaaaga
     3181 acaaaaatca tcactccagc acccaaaagc atgggatctt tttgaaactc attttttaac
     3241 gctaaattag cagataaatc taaagttcct gtttttaaat aaataaaagc tacagccata
     3301 acaaaaaacc cagctcctac agccgctaca ctaaagtatt ttatcgcact tgaaatagca
     3361 ttatcacttc cacgcattgc tattaaagta taaagtgcta aagaagaact ttcaagtcct
     3421 ataaaaataa gtgctaaatt tgagcttgaa accatcaaaa gcaaagatgc aatcataaat
     3481 aaaaataaag cataaaattc accctgattt tcttcttttt gcattaaaag atataaaaat
     3541 gaaaaacaca aaatcaccaa agaagcataa aatgaaacaa tatcattatt taaagtagcc
     3601 aaaaaagctt ttgcttctaa accttgagca tttgcattat ttaaaatcaa aaaagcactt
     3661 acaatcaaag acaaagaact tatgccgata taaaacgatc gatgaaattt ccaaaaacca
     3721 gagcaaagca aaagaactat tgcagttgta attaaaaata aaaatggata agataagctt
     3781 atatttaaaa gttctaaatt taaaaaatta tttaacattt gcctctccta ttttagataa
     3841 aaaatctaaa gtattttgct caacagctct aatattcatt gtttttataa gattatccac
     3901 atctttttgt atcggcttta aaagtatatt tggcataagc cctagtccaa aaatcattac
     3961 tacaatgcac acaagcgcta ctatttctct aaaaagtaaa gaaaaaccct ctataaagct
     4021 ttgtttttgc atgaaaaata tttttctaaa tactgcgaac atataaatcg ctcctaaaat
     4081 aatcaccaaa cctgccaaca aagcgtaaaa taaattaatc tttgctatac ctaaaagaat
     4141 taaaaactct cccacaaaag aaacagttaa aggcaaagaa acactcgcaa gtaaaatgag
     4201 cataaagaaa attgaaaata aaggtgcttt tttggctaaa gaatggtaaa aagaaatatc
     4261 ataagtatga tatctttggt ataaaagttc aaccattaaa aataaagctc ccgttacaat
     4321 accatgtgca aacatataaa aaaccgcacc actaataccc aaagcattta aagaaaaaat
     4381 tcccaaaatc atcacaccaa gatgtgaaat agaactataa gcaatcaatt ctttaatatt
     4441 ttctgctcta taagcaatta aagcgttata aacgatactt actatacata aagctacaat
     4501 taaaggcata aaatacacac tcgcatctgg aaaaagtggt aaacaaaaaa gtaaaaatcc
     4561 aaaaggagcc attttaaaaa ctacaagcat tacagaaaca agtataggcg aatttgcata
     4621 aaccttaggt gcccaagtat gaagtggaaa taaaggagct ttgatagcaa aagcgataaa
     4681 aaatgctcca aaaagtaaaa gttgctctgt aaaatttact gctgaggcat tatttttcca
     4741 aatttccaag tcaaaagtga agatatttaa aagctgataa tttaaataag cttgataaat
     4801 caatgctaca agcattaaaa ttgaacccgc aaaagcatag ataaaaaatt tcacccctgc
     4861 tctaaaatct ttaccataaa ctcccataat ataaagcaaa ggcaaaagag aaaattccca
     4921 aaaaacataa aacaacaaac catcttttgc gctaaaaagt cccataatag caaattctaa
     4981 aaagaatata caagatataa gcgctttttg ttctagtttc aaaaataaaa agcttaaaaa
     5041 tatcatcaaa gaacttaaaa gtatcaatac aagtgcaata ctgtctactc ctacatgaaa
     5101 gctaaaaaat ttcaaaattt taaaagagag attataatca aagcttaccc cttgtaaaaa
     5161 atccgcaaaa atatccaaat ttaaagccaa aatcataaaa cttacaacaa cgctaaaaac
     5221 cttaacgcct ccgcgattta atagcaaaac cacaaaagca gaaattaaag gaaaaaatat
     5281 caaataattt agcattttac accatccata ctaaaatcaa caaaatcaca aaagctgcca
     5341 ccaaaaacct aagcattaag tttaagctgt ttggcataat cattttttgt gaaatatttt
     5401 gagaatacaa agcaattttt tcaactattc tatcaaaaat ataaagatca caatgcttta
     5461 aaatcgcaca taagctttca tattttgaaa cgataaattg atgatagaat tgaggaataa
     5521 aataatcatt acttaaaagt ttatgaattt tattttcttc aatactttcc ttaaaccaag
     5581 aatttttata agcaaaaata gccaaaattg cacccaaaat agctgctaca ctcgcacaaa
     5641 tcattacaat ttgattttgc gcatcaataa aaactaattt tgtgcttaaa tattcaaaaa
     5701 aactatgttc gaaaaatcct gcaataatag ctaaaaccat caaaggactc atagccaaaa
     5761 gtgcgatttt acttgcttca tgtggatgtt catcatgtct tgcaggggta aaaaatacca
     5821 acattaaaag tctaaagcta taaaatgctg ttaaaaaagc tgcgattaag agcactaaaa
     5881 aaataccatg gtgaaaagaa atgaaagaat atcccaaaat caaatcttta gagaaaaatc
     5941 ctgcaaaagg ataaattcct gctaaagcta aagatcctat acacattaaa atagctgtaa
     6001 tttttaaagg tttaaaaagt ccacccattt ttttaatgtc taatttatca ttcatagcat
     6061 gcattacatt tccagcgcct aagaaaagta aagatttaaa aaaagcatgc gtagctaagt
     6121 gaaataaagc tataccataa gccccaagtc ctgcagccac aaacatatat ccaagttgcg
     6181 ataaggtaga gtaagcaata atgcgtttta aatccctaac caccaaagcc atagaggctg
     6241 caaaaatcgc tacaaaagct ccaagtaagg caataatata agaaacttca ggaactaaat
     6301 cataaagcgt actcgcacga attaccaaat aaacccccgc tgttaccatg gttgctgcat
     6361 ggattaatgc agaaacagga gttggccctg ccatagcatc agcaagccaa gtgtgaaaag
     6421 gaaattgtgc agattttccc atagccccta taaataaaca agttgcgatt aagatcaaag
     6481 cattgtgatc taggctttgt gccatggaaa aaacttcatc atattttaaa gttcctgctt
     6541 gcaaataaag ccaaaaaatt cctaaaagca tacccaaatc cgcaatacga ttcataataa
     6601 aagcttcatt agccgcaaaa gaataagtag cgtttttata ccaaaaacct atgagcaacc
     6661 aagagcaaag cccaacgcct tcccaaccta caaaaagtcc taagaaatta tcactcataa
     6721 ctaaaaaaag catagaaaag acaaaaagcc ccaaataagc aaaaaattta ttaaaaccct
     6781 catcatgagc catataaaaa atactataaa aatgcacaca agtagctaca atacctacaa
     6841 cactcatcat agtaagcgaa atagcgtcta tatcaaagcc aaaatttact ccagcaaacc
     6901 attcaaacaa actcacatta aaagcttcat tgcaaaaaag caaatacaaa gaacaaaaag
     6961 cactcaaagc aactagaagt gaacaaatta tccctacaaa ttgttttttc tcactcaaag
     7021 caaaacaact tgcaaacaaa aaagctataa aaggactaaa aagagaaatc aaagctaaat
     7081 tttgcatact aagcctccac ttcttttaag ctttttaatt ccaaagtgcc ttttcttcta
     7141 taccaaagca cgcacaaagc tacaccaaca gctacttcac aagccgctac acccatgata
     7201 aaaagtgcaa aaacctgtcc atttaaatca ttgtgcattt tagaagccgc tactaaggct
     7261 aaattagcac tatttaataa aatttcactc gaaataaaaa gcatgatgag attttgtctt
     7321 tttaaaatac ctacaagccc tatgacaaac attaaaatag ctataaaaaa atacttttct
     7381 atcattgttt ttcctttgtt agctctttat gagtaagcac tatagcacac actaaagcaa
     7441 tcaaaagtaa aatagctata aactcaaaag ccaaaagata ttttgaaaaa atcgctaaag
     7501 ccagttgttt attaaaatca aacaaagcag gatcgtttaa aggcaaatcc gtgctgatat
     7561 tttggtattt aaaacctata agcatggcca aaagtaaaat cgcacttaaa accaccaaag
     7621 taaaaaaact ttttttagct ttaagttgtt ctttaaattc tttagaagca tcaaaaaaca
     7681 tcatcgcaaa actataaagt ccaagcacag ctccactata aacaataatt tgtatcacac
     7741 ctaaaaactc tgcatcaagt aaaaaataaa atcccgataa aaacaccatt ccacccgcta
     7801 aagccgaaag agaataaagc atatttttac ttaaaaccgc aatgccaaaa aagcctaaaa
     7861 ccactacact aaaaaataca aaggctaaat tttctatcat ttgttttctc cttgctcttg
     7921 tgtgttttga ttttctaagg cactttcaag catcgcatcg taataatttg gcgttttttt
     7981 aacccacaaa tttgcatcct ttctaagact tcctgctcct tcaaattcaa cttgattttt
     8041 aagcttatca ataggagtta aaaaatcttg cttatagcca aaataagacc tttgctcggc
     8101 tgcattttca tactctgtgc catgcactat agcaagttca ggacaaacct cagcacaaaa
     8161 accacaataa atacaacgcc ctaaattaat actataattt tctacttttt tacgcccatt
     8221 ttcatctaaa gaagtttcca ttctgataca attgctaatg caaatttttt cgcaaagccc
     8281 acaacctata catctttcat tttcgctttc tataaaacgc atcaaacgat gaacagcacg
     8341 gtaacgattg tcaagcttta ccttttcaaa aggatattta atcgtagcac tattatttct
     8401 cttaagtaat tctctcatca tcacaaaaag ccctacaaaa agctctagtt taacgcttct
     8461 acgcaaagct tgtgaaattt tctcccaagt gctaacagga gtttttcttt tctcatctac
     8521 taaataataa tttttcatat caaactccta taaaagaact gtcaaagcag tgattaaaag
     8581 gtttaaaaca gctaaaggaa ttaagatcaa atagcacatt ttcatcactt gatctggacg
     8641 caattgcgga aaagcagctc ttgcccaaaa ataccaaaag aaaataaaac ttgattttac
     8701 tatcatcata atccaaccag gaataatcca aaagctatta aaacccccta aaaacaaaag
     8761 agtgaccaaa atagctccag ctatcataga agtatattca cctatgaaaa acatacccca
     8821 tcttaaaccc gaatactccg ttccataacc cgctacaatt tcagcatcat tttccgtcaa
     8881 acaaagcgga gttctattag tctctataaa taaagcaatt ataaaaagca caaaagccaa
     8941 aggttgttta aaaataagcc aagaaaaaaa tccatcgctt tgataattgt taatatccac
     9001 caaagaaaaa gaacctacaa gcattacaat agcaatcaaa gctaaagctc ctacgctttc
     9061 ataggaaata atcgctacaa gccctcttgc agcccctaaa atcgaccatt tattattact
     9121 tgcaagtcca cccaaaaaca ccgcataaaa gcaaagtcct gaagtaccga tgacaaaaag
     9181 caaagctaca ttgatatctg ccactatagg ctgaattacc tttccaaata aagtaaattc
     9241 aggtagcata ggaatggccg ctaaagaaac aaaagcacaa atagcagaaa tcaaaggtgc
     9301 tatagcaaaa ataaattttt gcgaatttga agggattata tcttctttag taaaaagttt
     9361 tatcatatca gctacaagtt gaataagccc aaaaggccct accatatcag gccctatgcg
     9421 tctttgaaaa taagctaaaa cctttctttc agcataagtt gcaagacctg ctaaactcgc
     9481 aaatattgca atgataataa tacatttaat caaagcctct aaagcaaaaa aagcaaaatc
     9541 actcatggtt tgctcctaat ttttctaaat tcgccacaac aaatctttca tcaaaaaaac
     9601 ttagcgtgtc aagcttttca tcaaaatacg gcaagaaagc tccatttttt atgtccttat
     9661 ccacacgcac actaaggctt aattctttat cttttatttt aagttttaca agatctttat
     9721 cttttaaatt tttttcttta gctaaatttt cacttacagc taaaaaaatc acctcattaa
     9781 tcgcactagc acgatttgaa aatctaccaa attgatagct aggattagca ctataaagca
     9841 aaatttcatc ttcttttagg cttaaatttt caaaatttgg agagatgaaa tcttttttag
     9901 caacttgttt gaaacattct aaattaagct catatcccct tttgcaatcg cctgcattgg
     9961 tataaaaatt gtctaaatga tcaaaatcaa tcggagaaaa acctttattt atagggagtc
    10021 tcttagtata atttatagta tattcctcat caaaacctaa agcattagcc aaatcattta
    10081 aaaaatatcc cttaaattct aaagcagcat tagttggtac cactctttta tcataattta
    10141 aaaaagttcc ttcttgctga tttaaactcg cactagctaa atttgcatgc tcttcataag
    10201 aaaaactaaa atcacctttt tcattgtagc ctaaagtctt gccttcttgc gtgtttttat
    10261 ccaaatcaca aattatagcc acacctaagg tattagtatg cgtaggattt aaaaagactt
    10321 taaaaggagt agtattttgg atcaaagcaa gtaatttagc aagttttttc gcatttttat
    10381 gaaaataaaa atcactccct acaacaagag taaaatttgc ttttttaagc aataaatctt
    10441 ctaatttatc ttcatctatg cctaaatttt tagcaaaaac agagcgttgt acttctatga
    10501 ttttttttac ttttttaggt acgacttttt ttacttcttt ttgaatttca ttgccttctt
    10561 catctttttc tatgacttgt tctacaactt cttcgttgat actttcttct atttctttat
    10621 tttcactaac aaaaaactct gctaaatgag ttttaatacc ttcatcttgg ctaaattttt
    10681 gaagtaaaaa atataaaatt tgctcttcat cgccattttt atgaatgtgc gggataaaat
    10741 ttttagaata ttttgctata cccatatctt ccataggatg aaaataaagc cctgagcctt
    10801 tattcatcac taaagcatta ttgattttat agctaagcgt tggagcatca tatcttaaaa
    10861 gcattccagc tacaaccaaa aaatcacttt ttgttatatc ttgagtatta gcgctataaa
    10921 actcaccaga attagcgata aattcttgta aaaattcttt aaatttcaaa gcttcttcat
    10981 tgatcaaaga aagattaaat ttctttttta aattttgtaa aatcaaagct tcttcattgg
    11041 taataaaact attaaattta atgtttttaa tttcattttt ctcaaaaagc tccacaagtt
    11101 ctttaaaggc tttttcatct ttatccgcct cattttgcgt atcaaaagca aaccttgcag
    11161 ccttatttaa actcgcaaag gcaaaatcat tactcacacg ataaattttt tctttttgat
    11221 tgctaatgcc gctttgctta atatcataat acatcaactc acaatcgctt gaatgcggat
    11281 ttgaagcagg gattctttta agttcccaaa tatttgaagt gtattgaaat ttcgaaccta
    11341 tcaaagctcc tgttggacac acgcttgtac attctccaca aaatgaacaa tcaagcgtat
    11401 caccatttgc agggcctatc aaactttttt gaaatttagt ccaaatcgca taagcatctt
    11461 ttcccatgct ctctttaaag ctattatcca cactatctcc gccacgagga acagtcttta
    11521 aagcactttc gccgatttta tccttacaaa ctgtaataca acgctcacac actatgcaaa
    11581 gtgcgggatc gtaattaatc attccccaat gtttatgtgg tttatgcgtg tctttaatcc
    11641 aatgtttttg aacatttaca cgacttttat gagtaaaatt ttgcaattca cactcgcctg
    11701 atttatcgca aactccacat tctaaaggat gattgataca ataagcttgc atgatctcat
    11761 ttctttcatc ccaaagattt tgtaaatcac tttctacaac cataccctct tttgctttag
    11821 tattgcaaga atataccttt ttaccatcag cttcaaccat acacatacga caagccaaag
    11881 taggactaca gcccgaaaga tagcaaatcg ctgggataaa aatatcattt cttcttgcta
    11941 tatttaagat atattcgcct tcttcaaagg cgcaatctat accattaatc ttaactgtca
    12001 ttttgcttcc tttatgcgaa ttggagtaaa atcaaaacca ttattttcat aatttaaaaa
    12061 agctatggtg ccttgtaaat tttcatctaa acaaagctta gttttaaaac taaaatcttt
    12121 agctaaaatt tcaacttcac tttgatcttt gcattttgca atttgtaaaa attgctttga
    12181 acaatgtaaa tttttatctt gcaaatttgc tctaaaaagc actaacccgt cataattatc
    12241 gagttctttt agggtgttta attttgcctt tttaaaatcg cattcttctt catcgctatc
    12301 taaaatcttt aatccatatt ttacacttaa gaaattcaaa aaatatttga tattttcact
    12361 atctttataa gaatggatat ttttatctat aattaaatac ttaacctctt ttaaaaaagc
    12421 aagcacttcg cctgcttctt cctctccaaa acaagattca gcacttaaat atccctcatc
    12481 taaatcgcaa aattgtcctt catcgcttaa tttacaaagc aaggccaaaa caaaactcaa
    12541 acttgcaatt tcgcatttgt aaaatttagc ttttaagttt ttatcttcca aacaagaaat
    12601 attaatgcta tttacaccta ttttttcaca taaatttttg tttttaaggc ttggcatatc
    12661 taaaaaacaa agagcattat cataaatcat accctctcct tttttataac aatagtccaa
    12721 tcgacttgat taaatttcaa agaatttaaa agctcacagc cttgttcttt tacaaaagaa
    12781 aaactttttt caacaggaga aaaatcgccg atttcaaaaa gcaccactaa aacctcacct
    12841 tgttttgctt cttttatgat ttgtgctaaa tcttcaaaaa gctctttgct ttttcttaaa
    12901 tctacccttc tcatcgatct atctcaccta aaactatatt tacattaccc ataatggcta
    12961 caacatcagc taaataagta cctacaagca tttcttcaaa aaacgcacaa tgccaataac
    13021 taggcgttct agcctttaaa cgataaggtc ttcctgtacc atcactatgg ataaaaaagc
    13081 caagctcacc ttttggactt tcagtaggca cataaacttc gcctttaggg ggttttaaac
    13141 cttgagtgat taaaacaaaa tgctgcatta aagaataatt ctgcgttaaa atttgttcct
    13201 ttgaagcact tacatactca ggatgcgtag ctaaaatttc aggcgaagta tctttataaa
    13261 gcatggcaca ttgtctaagg attttcaaac tttcacgaaa ttcttgcata taaactttat
    13321 atcttgcata agaatcccct tgcgtagcat aaggcacacc aaattcaact tcattataaa
    13381 gcaaataagg ctcttctttg cgtatatcgt attttatgcc acttcctctt aacatcacac
    13441 ccgtacaacc ccaatttaag gcttgttctt tagtaaccac acctacattt tcagttctta
    13501 aacgccaaat tctattatca tctaaaagat cttcataatc ttttaaatca tttggaaatt
    13561 tatcgcaaaa tgcaagcatt tcttctaaat aattctcagg taaatcaagc ataaccccgc
    13621 ctattctcat agaagaatgc gtaagccttg caccgcaata cttttctatc aaatccaaaa
    13681 catactctcg ttctctaaaa cagtataaaa atacactcat cgcaccaata tcaagcgcat
    13741 gagtagcaag ccaaagcaaa tgcgatgtga tacggtttaa ttctaaaagt atcatgcgta
    13801 tcactgcggc acggcgtgga atctctaaac cacaaagctt ttcaaccgct gcacaataag
    13861 cataattatt cgctgaagca gcgatatagt ccattctatc agtagtagga ataaattctt
    13921 gataaatcat attttcagcc attttttcca taccacgatg catataacct atacaaggac
    13981 gcgcttttac aacttgctct ccatcgagtt ctaaaataag acgcaaattt ccatgcgctg
    14041 aaggatgttg agggcctaag ttgataatca tttttgagtc ttcttgctca aaagctatat
    14101 tttcataata aggttttaac ttgctaggaa tttgcatttt aacgcctttt ctctaaaatt
    14161 tttgcttcat cacgttttac tttttttaca aaagccacac cttcatcttc ttgatattct
    14221 tgtttaaagg aaatttcctt cttttgacca ccttttggca cttcatggta aagtcttgca
    14281 aaatttagcg tatctttatc atcagcaaaa ccagaatctc tttgttcttc gcccactact
    14341 tcacgatatt ctttgccaaa aattttatca atctcatacc atcttgcaaa ctcatcgccc
    14401 tttaaaggat aagttttcaa aagcggatgt ccaaaccaat catcaggcat taaaatgcgt
    14461 tttaaattag gatgatttat gatgaaaatt ccaaacatat cataaatttc tctctcactc
    14521 caatttgccc ctttaaaaac atgagccacg ctttgcaaac gctcttttac gcctacaaaa
    14581 gtttttattc tcactcttaa ttttttttct aaatttaaaa gctgataaaa cacttcaaaa
    14641 ccatttttat ctgctataaa atcaatagca cttgcttctg taaaacttaa ataacctaaa
    14701 gttttaagca tttgcaaggt tttaacattg tcttcttttt taatttctat tacccaaaaa
    14761 tcaagctcta caaaggaatt taaaatttct acttgagttt ttaaaacttc aaaatcctct
    14821 ttaaaaacac tttcattaac atcagatttt acagtgtgtg gtgcgtgata aaatctatct
    14881 ttgtagtaat tttgagtttg agcatttttt ttatcgctat actttctcat catatcaacc
    14941 ttttaggtgc gatcttgcga cttgcttttt ctttgcgaat ctttttttgc aaaatcatca
    15001 aagcaaactg aaaactttcg gggcgtggag cacagcctgg cacataaata tctacaggta
    15061 taattctatc cactccttga acagtagaat aagtattaaa cataccgcct gtattggcac
    15121 aacttcccat agaaatcacc catttaggat caggcatttg atcataaagt cttcttgtaa
    15181 attcagcgtg ctttttacac aaagttcctg cgataatcat cacttcactg tggcgtggtg
    15241 aagctctaaa aatcgttcca aatctatcaa aatcatatct tgaaccccca gccgccatca
    15301 tctcaatcgc acaacaggca agtccataag ataaagccca taaagaatta ctcctgcccc
    15361 attgaactag cttatccaca ctggttaaaa ctacgggcaa accacttgca taatttactt
    15421 gatgctctgc catgcaaacg ctcctttttt ataagcatat aaaaatccaa ctcctaaaag
    15481 tacgataaaa acaaaaactt ctaaaaatcc aaaccaacct aaatctttaa aaatcaaagc
    15541 ccaaggaaat aaaaacacaa cttctatatc caaaagtatg aagattaagg cgatgatgaa
    15601 aaattgagag ttaatcttgt tagcttgttt aacaggaata ggaccacatt cataaattcc
    15661 aagtcctaat tttttgcgat tttttgcggc aaaattatta ccgatttttg aagctaaaaa
    15721 aaccagtcca aaaaaaataa cactagcaag tactagcatt aaaaaaatac caaaataagg
    15781 atgcgaagca tctatatgag acatttattc tcctttttta aagcacttta atcactccac
    15841 aacaaaaatt aaatttacac ttttctttat tttactctaa actttctata ttgaaactta
    15901 tattaaaaaa tattttttaa agttttaatt ttttatgatt aaatt
//
LOCUS       DARBAR010000029        15598 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.029, whole genome shotgun sequence.
ACCESSION   DARBAR010000029 DARBAR010000000
VERSION     DARBAR010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15598
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.029"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..593
                     /locus_tag="SB815_000688"
     CDS             <1..593
                     /locus_tag="SB815_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG0906442.1"
                     /translation="TLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNILSAPCSSGE
                     EVYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEKRRFFLESE
                     DKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKLKLMERFHR
                     ILNDKGRLYVGNADLIPETIYFKKIFSPRGVYYEKV"
     gene            729..1457
                     /locus_tag="SB815_000689"
     CDS             729..1457
                     /locus_tag="SB815_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG0906443.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLLDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            1479..2258
                     /gene="peb1A"
                     /locus_tag="SB815_000690"
     CDS             1479..2258
                     /gene="peb1A"
                     /locus_tag="SB815_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HEG0906444.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKKYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            2260..3012
                     /locus_tag="SB815_000691"
     CDS             2260..3012
                     /locus_tag="SB815_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG0906445.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            3023..3682
                     /locus_tag="SB815_000692"
     CDS             3023..3682
                     /locus_tag="SB815_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG0906446.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            3790..4719
                     /locus_tag="SB815_000693"
     CDS             3790..4719
                     /locus_tag="SB815_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEG0906447.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            4886..6997
                     /locus_tag="SB815_000694"
     CDS             4886..6997
                     /locus_tag="SB815_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HEG0906448.1"
                     /translation="MTQLSTKILWLFVAALGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGSFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHTLAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSITPEEITTLTTNIGEYTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKIANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIRKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            6978..7175
                     /gene="kcuS"
                     /locus_tag="SB815_000695"
     CDS             6978..7175
                     /gene="kcuS"
                     /locus_tag="SB815_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HEG0906449.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(7215..7628)
                     /locus_tag="SB815_000696"
     CDS             complement(7215..7628)
                     /locus_tag="SB815_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG0906450.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKNPISEELKRIHGFLNA"
     gene            7690..9522
                     /gene="ciaB"
                     /locus_tag="SB815_000697"
     CDS             7690..9522
                     /gene="ciaB"
                     /locus_tag="SB815_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HEG0906451.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLIDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIGLIMNIFEISWTKEIIEKNNKILSTQFPNLDDAME
                     FLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFFENEILKLEFAFENMIDQL
                     KIFASSEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEFAWMKVKSPLQVGHPLEYY
                     EDNYTHAVALEWDIRIEDENDFDVLKFGNEIKESFEHVYKNIGLEDCELEKEVLSNIE
                     KTQLYICTPMIFYGAELKGLFSAQVVPNDEFVSSKAGKKIFAFINFVYENAKTKPFMK
                     ISSEVFDKEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGHIFFIANDTEKTMNQSGFF
                     KNIEEYKATTGGLINFFYHEQDDLIMPVFHELIKRAIGLISWQRVDEVRPYYTEGLIH
                     LSLLFESEVLIFENNNLKINFDLGYYEKFKELTLKNYHELAKHYALRLDAKEFLSRFC
                     EIEDNIFLPIMPKCKEFVKFYYDLYEKIGNEIDNSGEFERYKKK"
     gene            9624..9920
                     /locus_tag="SB815_000698"
     CDS             9624..9920
                     /locus_tag="SB815_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEG0906452.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            10047..10946
                     /gene="cysM"
                     /locus_tag="SB815_000699"
     CDS             10047..10946
                     /gene="cysM"
                     /locus_tag="SB815_000699"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HEG0906453.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(10953..11513)
                     /locus_tag="SB815_000700"
     CDS             complement(10953..11513)
                     /locus_tag="SB815_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEG0906454.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
                     GHFYKEINDLNPQEILRELRIFLNSQ"
     gene            complement(11510..11962)
                     /locus_tag="SB815_000701"
     CDS             complement(11510..11962)
                     /locus_tag="SB815_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906455.1"
                     /translation="MRKIIFILAFAFVIAILYIIFDFYVIKDSQKITKTDFSTPLTCD
                     LNVKDCTYSFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIK
                     PKIHRLNSTDYESKIVLAACVLDTMRFRVEFMDNNKPIGFYFDFELKK"
     gene            complement(11966..12385)
                     /locus_tag="SB815_000702"
     CDS             complement(11966..12385)
                     /locus_tag="SB815_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEG0906456.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTNKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDTKVNLDLKFNNHKTIELKNIDSKEF"
     gene            complement(12471..12941)
                     /locus_tag="SB815_000703"
     CDS             complement(12471..12941)
                     /locus_tag="SB815_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906457.1"
                     /translation="MIRNFFIGMSFLGILFLAFYTLYDKKKESIFSLNTCQPLTCDLN
                     LQDCVFSFNKKNIEVSAYPKPIKIFNKTTIKIKNFPHYSNLKIKIYSLNSYIGDIIPK
                     FNIVNGDILINFIGRSITDDSRFRVEFLNNNAPTGFFFDFDVTMQKNFQTGNTH"
     gene            13097..14074
                     /locus_tag="SB815_000704"
     CDS             13097..14074
                     /locus_tag="SB815_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HEG0906458.1"
                     /translation="MLKRLALLIALSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYRFRGDKILYVKIDSKGKMKILAEQ"
     gene            14075..15061
                     /locus_tag="SB815_000705"
     CDS             14075..15061
                     /locus_tag="SB815_000705"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEG0906459.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGRGELVLGNGKA
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            15064..15531
                     /locus_tag="SB815_000706"
     CDS             15064..15531
                     /locus_tag="SB815_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEG0906460.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
BASE COUNT         5484 a         1839 c         2766 g         5509 t
ORIGIN      
        1 aaactttaga ttttgtaacc ataggtgaaa cttatttttt aagagaattg gctcaattga
       61 aagaaataat ttattatgcc aaaagcttag aaaagagagt aaatatccta agcgcccctt
      121 gttcaagtgg agaagaagta tattctttgg cattattggc tgcacagaat tttattaaag
      181 atatgtatat tttaggcgtt gatattaatt caagtgtgat tgaaaaagca aaacttggaa
      241 aatatcaagg aagaacttta cagcgattga gcgagagtga aaaaagaagg ttttttttag
      301 aaagcgaaga taaattttat actattaata aaaatgagct ttgtacttgt aaatttgaac
      361 tttgcaatgt ttttgaagaa aaattttcaa gattgggaaa atttgatatt atagcttcta
      421 gaaatatgat tatttatttt gatcatgaat caaaactaaa acttatggag aggtttcata
      481 gaattttaaa tgataaagga aggctttatg ttggcaatgc tgatttaatt ccagagacta
      541 tttattttaa aaagattttc tctccaagag gtgtttacta tgaaaaagta taaattctaa
      601 aaattactaa aagttacact ttggaaattt attagtaaaa ataagttaca ttttgaagta
      661 gttttcttta tttaatgata aaataatttc aattaatttt atatttagct aaaaataaag
      721 gaaaaaactt gattgaatta aaaaatgtaa acaaatacta cggaactcat catgttctaa
      781 agaatattaa tctttctgtt aaagaaggtg agaagcttgt tattataggt ccaagtggaa
      841 gtggaaaaag tacaactatc cgttgcatga atgggcttga agaagttagt tcaggagagg
      901 tcgtagttaa caatcttgtt ttaaatcata aaaataaaat tgaaatttgc cgaaaatatt
      961 gtgcaatggt ttttcagcat tttaatttat atccacatat gacggttttg caaaatttga
     1021 ccttagctcc aatgaaactt caaaaaaaat ctaaaaaaga agctgaagaa acagctttta
     1081 agtatttaaa agttgtaggt ttgctggata aagcaaatgt ttatccagca accctttcag
     1141 gtggacaaca acaacgcgtt gctatagcaa gatcactttg tactaaaaaa ccctatattt
     1201 tatttgatga acctacttca gcccttgatc cagaaaccat acaagaggtt ttagatgtaa
     1261 tgaaagaaat ttcacatcaa agcaatacta ccatggtggt tgttacacac gaaatgggtt
     1321 ttgcaaaaga agtagcagat aggattattt ttatggaaga tggtgctatt gtggaagaaa
     1381 atattcctag tgaatttttc tcaaatccaa aaactgaaag agcgcgactc tttttaggga
     1441 aaattcttaa aaattaacca aaattgaaag gagaaaaaat ggtttttaga aaatctttgt
     1501 taaagttggc agtttttgct ctaggtgctt gtgttgcatt tagcaatgct aatgcagcag
     1561 aaggtaaact tgagtctatt aaatctaaag gacaattaat agttggtgtt aaaaatgatg
     1621 ttccgcatta tgctttactt gatcaagcaa caggtgaaat taaaggtttc gaagtagatg
     1681 ttgccaaatt gctagctaaa agtatattgg gtgatgataa aaaaataaaa ctagttgcag
     1741 ttaatgctaa aacaagaggc cctttgcttg ataatggtag tgtagatgcg gtgatagcaa
     1801 cttttactat tactccagag agaaaaagaa tttataattt ctcagagcct tattatcaag
     1861 atgctatagg gcttttggtt ttaaaagaaa aaaaatataa atctttagct gatatgaaag
     1921 gtgcaaatat tggagtggct caagctgcaa ctacaaaaaa agctataggt gaagctgcta
     1981 aaaaaattgg cattgatgtt aaatttagtg aatttcctga ttatccaagt ataaaagctg
     2041 ctttagatgc taaaagagtt gatgcgtttt ctgtagacaa atcaatattg ttaggttatg
     2101 tggatgataa aagtgaaatt ttgccagata gttttgaacc acaaagttat ggtattgtaa
     2161 ccaaaaaaga tgatccagct tttgcaaaat atgttgatga ttttgtaaaa gaacataaaa
     2221 atgaaattga tgctttagcg aaaaaatggg gtttataata tgaatgaaag tgtaggtttt
     2281 gttgaacatt taagacaaat tcttacttct tggggtttat atgatgaaaa tagtataagc
     2341 ccttttgcgg tatggaaatt tttagatgct ttggataata aagatgcttt tattaatggt
     2401 tttatttata ctttagaagt aagcattctt gctttgctta tagctacaat ttttggaact
     2461 ataggcggag ttatggctac aagtagattt aaaattatca gagcctacac tagaatttac
     2521 gtagagcttt ttcaaaatgt tcctttggta atacaaattt tctttttgtt ttatgccttg
     2581 cctgttttag gtataaggct tgatatattt actattggtg tattgggtgt tggggcgtat
     2641 cacggagctt atgtaagcga ggtggttaga agtggaattt tggctgtgcc aagaggtcag
     2701 tttgaagctt ctgcgtctca agggtttact tatattcaac aaatgcgtta tattatagta
     2761 cctcaaacca ttagaattat tttaccaccg atgacaaatc aaatggtaaa tttaattaaa
     2821 aatacctctg tattgcttat tgtaggtgga gctgagttaa tgcattctgc tgatagttat
     2881 gcagctgatt atggaaatta tgcgccagct tatatatttg cagcggtttt atattttata
     2941 atttgctatc ctttggctta ttttgcaaaa gcttatgaaa ataaattaaa aaaagcacat
     3001 ttaacgagat aaagggttgt taatggaaaa tgtttttaat gcgcaaaata ttgaattttt
     3061 aatgcaaggt ttatttctga cattaaaaat agccttggca acttgtatta tttcgattgt
     3121 ttttggaact tttttagcta taactaaaaa ttatggagat agattaagta aatttttagc
     3181 agcttgctat atagatattt ttagaaatac tcctttattg ctatggatgc tcgcagcttg
     3241 ttttgttttg cctgtatttt ttggacaatt tcctcaagct ttttggggta ctataggatt
     3301 ttcactttat acgagttcgg ttatggctga aattattaga ggcggattaa attctatacc
     3361 aaaaggtcag tttgaagcag cttattcaca aggttttggt aaatttttta ctctttttta
     3421 tattatttta ccacaaactt ttagaaaaat aatacctgct ttattatctc aaattgtaac
     3481 cactgtaaag gatacagctt atttagcagg tctgggtata gctgaactta cttataattc
     3541 aaaaactata ttggcaaaac taacaagttt tgaagaaatt ttagcgatga taggtgttgt
     3601 tgcgggaatt tattttataa tatgtttttc actttctatg ttggtaagat attatgccaa
     3661 aaagacagct tatatttctt aaaaaagctt atatttttat ataagctttt taaatttaca
     3721 gcagttttta acattttttt tattaaaatc ttttgtatta attcataatt ttattgatta
     3781 aggtttttta tgcgaggtta taaaattttt tcaggctcag ctaatgtcga atttgcaaga
     3841 caagtttcta aatatctctc cctgccttta agtgatgctg gagtaaagcg gtttagtgat
     3901 ggagagatta gcgttcaaat tgatgagagt gtacgcggaa aggatgtttt tattattcaa
     3961 agtacttgcg ctcctacaaa cgataattta atggaacttt taattcttac agatgctttg
     4021 cgtcgctcaa gtgcaaattc aattacggct attatcccat attttggcta tgcgagacaa
     4081 gatagaaaag caaatcctag agtgccaatt actgctaaac ttgtggctaa tttgattcaa
     4141 gcagctggga ttgatcgcgt agctacgata gatttgcatg caggacaaat tcagggtttt
     4201 tttgatattc cagtagataa tctttatgga agtatagttt ttaatgatta cattaaagcc
     4261 aaacatttta aaaatgctat tataggaagt ccagatatag ggggtgttgc aagagctagg
     4321 agtgttgcaa agcatttagg acttgatata gttatagttg ataagcgtcg tgaaaaagcc
     4381 aatgaaagtg aagtaatgaa tattattgga gatgtaaaag ataaagaagt tatcttagtg
     4441 gatgatatta ttgatactgc tggcactata gttaaagccg cggaagcttt aaaagaaaaa
     4501 ggtgcaaaat ctgttatggc ttgctgtact catgcagttt taagtggaaa agcctatgag
     4561 agaatagcaa gcggagtttt agatgagctt gtggtaacag atactatacc tttaaaagag
     4621 caattaccaa atattaaagt attaagcgtt acacctgttt ttgctgaagt aatacgtcgt
     4681 gtttatcata acgaaagtgt aaattctctc tttatttaga ttaaaaaagc ttaaagatta
     4741 tttttaagct tttcattttt atgctactta aagaaacaaa aaacatatat ttttttaaaa
     4801 atgtgaaaaa actaaacatc tttctataca atttaatcta taaatctgct attctttgaa
     4861 aatattttat tttcttagga gaaatatgac tcagttaagt actaaaattt tatggttgtt
     4921 tgttgcagct ttaggcgcta tttgttttgg ttatttagct ttacaaaatg gcgaaagtgt
     4981 atcagcgatt tatttggtgg ttgctgctgt atgtatttat atgataggat atagatttta
     5041 tgggagtttt gtagcttata aggttttaga acttgataaa aatcgtgcaa caccagcact
     5101 tgtagaaaat gatgggcgtg attttgtgcc tacaaataaa gctgtattat ttggacatca
     5161 ttttgctgct attgcaggag caggtccatt agtaggacct atcttggccg ctcaaatggg
     5221 atatttgcct tctatgcttt ggattttagt aggaggagtt ttagcgggtg ctgtgcatga
     5281 ttttgttgtt ctttttatat ctactcgtag aaaaggtaga agtcttggcg agatgattaa
     5341 ggatgagatg ggtaaattta caggtggagt tgctatggtg gcgatttttg gcattatgct
     5401 tattattatt gccattttag ctatggtggt tgtaaaagct ttagcagaat ctccatgggg
     5461 tttatttact atcgcaatga cgattcctat agcaatattt atgggaattt atatgcgttt
     5521 tatccgtcca ggtagagtag gggaggcttc tataataggt tttgtgcttt taattttggc
     5581 tattcattat ggtagcgtta tagctgctga tccttattgg gctaaaatat ttactttaga
     5641 agctccaact ttggcaattg ttatgatggc ttatggtttt attgcttctg ttttacctgt
     5701 gtggttttta cttgctccaa gagattatct ttcaactttt ttgaaaatcg gtgttattgt
     5761 ggtaatggct gtagctattg ttttggttgc tcctgattta caaatgccaa aagcaaatac
     5821 tcagtatttt gatggaacag gtccagtatt tgcaggtgga gtgtttccat ttttatttat
     5881 taccattgct tgtggtgcga tcagtggttt tcatgctttg atttctagtg gaactactcc
     5941 taaaatgctt gaaaacgaaa ctcatacttt ggctgttgga tatggctcta tgcttgctga
     6001 gagtgctgtg gcgattatgg ctttaatttg tgcttgtatt ttacatccag gtctttattt
     6061 tgctataaat tcaagctctg ctttgatagg aacagatgtt gtaaatgtag cacaaactat
     6121 ttcaagttgg ggatttagta ttactcctga agaaattact actttaacca caaatatagg
     6181 agagtatact atactttcaa gaacaggggg agccccgact tttgctatag gtgtagcttt
     6241 gatcttgcat gaactttttg gcggcgtgga tttgatggct ttttggtatc attttgctat
     6301 attgtttgaa gctttattta ttttaacagc ggtggatgct gggacaaggg cttgtcgttt
     6361 tatggtgcaa gatatattgg gtaatgttta taaaccttta ggagatattc ataattatcc
     6421 agctggactt ttggctacgg ctttaagtgt tgcaggttgg ggatattttc tttatcaagg
     6481 cgccattgat cctaagggag gaatttatac actttggcct ctttttggcg tgagcaatca
     6541 aatgcttgcg ggtatggctt tgcttcttgc tacaactata cttgtaaaaa tgggcaaggc
     6601 aagatatact tgggttactt tagtacctgc ggtatttgtc ttagtggcaa ctctgtatgg
     6661 aggaattcaa aaaattatgc cttatgaaga aggcaataaa atagcaaatg cggtaagtca
     6721 tgtagccgcc gttagcatac aaagtcaaaa aattaaagat ttagaattta aattaaataa
     6781 tactaaagat gaaaaagaaa tttctacaat tagaaaagaa atttcaatag ccactcaaaa
     6841 taaagttgga aatttactta atgcaattct ttgtgtgttc tttatgatag ctaccttgct
     6901 tgttataatt tcttgtatag gaatttgctt aggtaaaatt aaaattcctc ttaaagaaac
     6961 taagtatatt aagattgatg aatttcaaaa aatttaagta ttattatgaa aaagccgaaa
     7021 ggttttttca tcccttggtg ggactttcta gttatgataa gtatttagaa cacatgaaac
     7081 aaaaacatcc aggaaaaatt ccaaaaacca gaggggaatt tttcaaagaa tgtctagata
     7141 aaaaatataa tagtggcggt ttaaataaat gctgataagc ttaaaggata aagttttatc
     7201 atacaaaata agctttaagc atttaaaaag ccatgaattc ttttaagttc ttcactaata
     7261 ggatttttct ttccatctct tgtaacactt acataagtta ctaaagccga agttacatta
     7321 atgcaagaag tacaaccttg agaatccact ctttgagctg tgacttctac ttcaacgctg
     7381 attgaagtgt tgcccacatt tacaacttta gagtaacaag aaattatatc gcctataaaa
     7441 acaggttctt taaaaactac tttatccata gagatggtta caacgcgttc aggagaaagt
     7501 tctcttgctg cgatagctcc tgctaaatcg atttgtgaaa gtatccatcc gccaaaaata
     7561 tttcctgctg gatttgtgtc acttggcata gctacaattt ttaattttgg ttctcccata
     7621 tctctcattt ttactcctta ttttaaaaaa tgaattataa ttaaaaaagt taaaaaggag
     7681 aataaaagta tgaataattt taaagaaata gctaaattgg ttagaaaata caaagaaaga
     7741 aataatgcgt tatatgagtt tttagacaaa gaagatgtgg gcgagtattt tagatctttg
     7801 atttctttaa gtgagttaaa acaagataaa acaactatgc tagccatact taggcgtttg
     7861 attgatttaa aagaagaaaa tttagttcaa gagtggaaaa aaaacaactt taaggaagat
     7921 aagattatag agttaaaaca taagttctat gaagaggtta gaaagtttta tgaaaaagaa
     7981 catcaaaatt taattaatga aataaaagag aaaaaacttt taaataattt ttatcagtcc
     8041 ttaatacaag gagtgcataa tataggttta attatgaata tttttgaaat ttcttggact
     8101 aaagaaatta tagaaaaaaa taataaaatt ttatctactc aatttccaaa tttagatgat
     8161 gcaatggaat ttttacgtaa aaatcattta tatcaaaaaa ctccagaagg agaaatttgt
     8221 gagcgaagct atggtgtttt agttagaata ggaaatttat ggaaatttgt tccttatgcg
     8281 agatttttcg agaatgaaat tttaaaatta gaatttgctt ttgaaaatat gattgatcag
     8341 cttaaaatat ttgctagcag cgaagaggaa aaagcttata tagaatattt tgaaaaatta
     8401 aaattagcgt tttgtgaaaa agatgaagat agggttataa aagcttggca agaagctgaa
     8461 tttgcttgga tgaaagtaaa atcaccttta caagtgggac atcctttaga atattatgaa
     8521 gataattata ctcatgcggt ggcattagaa tgggatataa gaatagaaga tgaaaatgat
     8581 tttgatgttt tgaaatttgg taatgaaatt aaggaaagtt ttgaacatgt ttataaaaat
     8641 ataggacttg aagattgtga attagaaaaa gaagttttat ctaatataga aaaaactcaa
     8701 ctttatattt gcactccgat gatattttat ggtgctgaac ttaaaggttt attctcagct
     8761 caagtcgttc caaatgatga gtttgtaagt tctaaggcgg gcaaaaaaat atttgccttt
     8821 ataaattttg tatatgaaaa tgctaaaaca aagcctttta tgaaaatttc tagcgaggtt
     8881 tttgataaag aatttttgga ttttggaaga aatattttat tttatcagga aaaaatttgg
     8941 aaaagggttt atgaagtatc aactataggc catgaatttg gtcatatatt ttttattgct
     9001 aatgataccg aaaaaacaat gaatcagagt ggttttttta aaaatataga agaatataaa
     9061 gctactacag gtggacttat aaatttcttt tatcatgaac aagatgactt gataatgcct
     9121 gtttttcatg aacttataaa aagagctatt ggacttattt cttggcaaag ggttgatgaa
     9181 gttagacctt attatacgga aggacttatt catcttagct tgctttttga aagcgaagta
     9241 ttgatttttg aaaataataa tttgaagata aattttgatt tagggtatta tgaaaaattt
     9301 aaagagctaa ctttaaaaaa ttatcatgaa ttggcaaaac actatgcttt aagacttgat
     9361 gcaaaagagt ttttaagtag attttgtgaa attgaagata atatttttct tcctattatg
     9421 cctaagtgta aagaatttgt taaattttat tatgatttat acgagaaaat tggtaatgaa
     9481 attgataata gtggagaatt tgaaagatat aagaaaaaat aataaagttt tttgaaaaaa
     9541 acttaaaaaa agctgttttt tacttgatat tgttttttaa atatgctaaa attaggcgtt
     9601 tcaattaaaa caaaggagct tttatgacta aagcagattt catttcatta gttgctcaaa
     9661 cagctgggct aacaaaaaaa gacgctacta ctgctactga tgcagttatt tctactatta
     9721 ctgatgtttt agctaaaggt gatagcatca gttttattgg ttttggtact ttttcaactc
     9781 aagaaagagc tgctagagaa gctagagtac caagcacagg aaaaacaatc aaagttcctg
     9841 ctacaagagt tgcaaaattt aaggtaggta aaaaccttaa agaagctgtt gcaaaagcaa
     9901 gcggcaaaaa gaaaaaataa aacttcggct agataaattc tagccttctt tcttaattaa
     9961 ttcagatatt ttgtatcttt tatttacttt atttttttaa acttttataa aactatcatt
    10021 attaaacaaa aaaggatatt aaaattatga aagtacatga aaaagtaagt gagcttatag
    10081 gaaatactcc tattatacat ttgaaaaaat ttggtatcaa tgtttttgct aaatgtgaat
    10141 ttttaaatcc tagtcattct ataaaagata gagcagcttt tgaaatgatt aaagatgctt
    10201 tagatagtaa aaaaattaat caagatacta caatagttga agcaactagt ggaaatactg
    10261 gaatttcttt ggctatgatt tgtgcagatt tgggacttaa atttattgct gtaatgcccg
    10321 aatctatgag tttagaaaga agaaaaatga taacactctt tggcgctagg ttagaattaa
    10381 ctcctgcaaa tttaggaatg aaaggagcgg ttgataaagc aaatgaaata ttattaaata
    10441 ctccaaattc ttttatggtt tctcaatttg aaaatatttc aaataaaaat gcgcatcgta
    10501 agaatacggc tttagaaatt ttaagagatt tggataatga acttgatatt tttgtagctg
    10561 gttttggaac tggcggtact attagtggag ttggggaaat actaaaagaa aaattagaaa
    10621 aagtgcatat tgttggagtc gagcctctaa attctccatt gcttagcaaa ggtgaagcgg
    10681 gaagccataa aatacaagga ataggggcga attttatacc tgctatttta aataaagaag
    10741 ttatagatga agtgatcaca gtaagtaatg aagatgctat aaatacagcc aaagaacttg
    10801 ccaaaagtgg tttaatggta ggtatatcaa gtggagcaaa tgtatttgcc gcaagtatgc
    10861 tagcaaagaa atttccagat aaaagaattt taactatgct aaacgatacg gctgaaagat
    10921 acctctcaac cgatcttttt gcttaagtat aattattgag aatttagaaa aattctaagt
    10981 tctcttaaaa tttcttgtgg atttaaatcg ttaatttctt tataaaaatg acctttttca
    11041 tcaataagat aaagcatatt gctatgtgct atagaataac ccataaaaga atcatttaga
    11101 tctatttttt gatattgaac attatattgt tttgttattt tttgaagagt tttttcatct
    11161 tttgcaatta aggcatctgc ttttgggtaa aagtatcgta accattcgtt tgtattgctt
    11221 aagttattat ctctatttgg atctaaagaa ataaaaagaa ggtgagcctt aggattattg
    11281 atttgcttta aggctttgcc tactaaacta agagttgccg gacaaacatc agggcaataa
    11341 gtatatccaa aatagataat aagcttatct cctttaaaat cttttagggt ggtttcctct
    11401 tttaagtctg attttaagat aaaatcataa gaattttgat gatttttaat aaaaaatatt
    11461 acacctaaaa taatggcaac tataactata aacaaaataa tatttttttt cattttttta
    11521 gctcaaaatc aaaataaaac cctatgggtt tattattatc cataaattct accctgaaac
    11581 gcatagtatc taaaacgcaa gcagcaagaa ctattttact ttcatagtct gttgaattta
    11641 atcgatgtat tttaggttta atttcgccca tatacatatt taatccataa attttaattc
    11701 ctaagttgtt ataatttcct agatttacaa tctttagatt tgtaacatct aaagattgta
    11761 agggtttggg atttagggaa attaagactt ttttattgtt aaaactatat gtgcagtctt
    11821 taacattaag atcgcaagtc aatggggtag aaaaatcagt ttttgttatt ttttgagaat
    11881 cttttattac ataaaaatca aaaataatat ataaaatagc aataacaaaa gcaaaagcta
    11941 ggataaaaat aatttttctc attaattaaa attctttaga atcaatattt tttaactcta
    12001 tggttttgtg attattaaat tttaaatcta aatttacctt cgtgtcttta ataataggtt
    12061 tttttagttt taaaagcatt atatggtaac ctccagattt aagctctgtg cttgaatgag
    12121 cttttataat aatttcagga attttttgca tcatcatttt tccatcttta tgtatatgtg
    12181 tatgcagttc actgacttca ctgatatcgc ttttggcact tattagagca atatccttat
    12241 tagtattatt aaaaatagta agaaaaatag cactattttg cgcatgaggt ggagtttgtt
    12301 ttacaaaggc attttttacc tctatatcat taacagccca aagatttaca gcaaaaagag
    12361 cacctaagag aagaattttt ttcatattgt atccttattt ttataatatt aaatatttgt
    12421 tcattatatc aaaaaatatt tttatttgaa tataaaattt tgaaaatttt tcaatgtgtg
    12481 ttacctgttt gaaaattttt ttgcatagta acatcaaaat caaagaaaaa accagttgga
    12541 gcattattgt ttaaaaattc aaccctaaat ctagaatcat cggtaatgct tctacctata
    12601 aaatttataa gaatatcacc attaactata ttaaatttag gaatgatatc gcctatatag
    12661 gaatttaaac tataaatttt aatctttaaa ttagaataat gaggaaaatt cttaattttt
    12721 atagtagttt tattgaaaat ttttataggt tttgggtagg ctgaaacttc aatatttttt
    12781 ttattaaaag aaaaaacaca atcttgtaaa tttaagtcac aagttagagg ttggcatgta
    12841 tttaagctaa atatactttc tttcttttta tcatataatg tataaaaagc taaaaacaaa
    12901 atgcctaaaa aagacattcc tataaaaaaa tttcttatca ttatagacaa ccttttaaaa
    12961 caagccttta tgatttgtaa aaattatatc ataaataagg ctgcattgtt aatataatta
    13021 atatttttta agaaaaaaaa tattataatc acaaacattt ttgacttaaa aaatttgaaa
    13081 tacctaagga aaaacattgt taaaacgact tgctttatta attgcacttt cttcattgat
    13141 gttgcatgcc tcagatcttg ttaaaattta tcttaatcaa ggattagatg ctgttggtgt
    13201 agcgattgaa aaagaattaa ctcaaaagga tttttggtta agtgaaatag gagataaaaa
    13261 tatttcactt ggatactatg atgataatgt tgctatcgtg cttacaaata aaacagataa
    13321 aattctccgt gtttattctt acgaggacgg aaaaataaga aaagattttg aacaaaaaga
    13381 aataataact ggattaatgg gtgataaaaa aatagaagga gatttgaaaa ctccagtagg
    13441 tttttatgag ttaggccgta agtttaatcc aggtgatcct tattatggtc cctttgcttt
    13501 tgccacaact tatccaaatt tacttgataa agtacaagga aaaacaggtg gtggtatttg
    13561 gatccatggc tatcctttag atggttctag acttgatgaa tttaaaacaa gagggtgtat
    13621 tgctttattt aataataatt tggagaaatt tgcaaaagtt gtgcaagata aaaaagtttt
    13681 tgttatgaca gaagaaaaag aaaaaattag agctaaaaag gatcaaatcg ctagtttatt
    13741 ggctgatctt tttacatgga aactagcttg gacaaatagt gacactaatg cctatttaag
    13801 tttttatgat gagcaagaat ttaaacgttt tgataaaatg aaatttgaac agtttgcttc
    13861 catgaaaaaa tctatttttt ctcgtaaaga agataaaaag attaaatttt cagatattaa
    13921 tatcagccct tatccgaatt tagaaaatga aactatgtat agaatttcat tttatgagga
    13981 ttattacact aaaaactatc ggtttagagg cgataaaatt ttatacgtta agatagatag
    14041 taaaggtaaa atgaaaattt tagcagagca ataaatgtct ttaataaaaa ttgatcaaaa
    14101 agcttatgaa tacaatttaa gacatattgc taaaaaaata gggagttttc aaagattaat
    14161 ttgtgttttt aaagataatg catatggaca tggagctaag cttttagctc cattagccaa
    14221 aaatttagga gtttcttttg ttgctgttaa gagtgaagaa gaagctcgag aaatcgaaga
    14281 attttttgag aatatattaa tactatcaca tcgtcctcat ggtaatgaaa attctcgatt
    14341 tatttatgct ttaaatgaca tttctcaagt aaaaaattac aagcaagata taaaaataca
    14401 tctaaaaata gatacaggca tgcatcgcaa tggaatttgt gtagaaaatt tagagcatgc
    14461 tataaatctt attcaaggta gtgatttaaa acttactgga atgtttacac attttgctag
    14521 tgcagatgaa atggatggaa gtttttttgt tcaaaaagaa aattttcaaa aagctaaaaa
    14581 gatagtaaaa aaatattttt caaatttatt atttcattcg tataattctg cagcattatt
    14641 tagagggaaa attcctgaag atgaatattg tagagttggg cttgttcaat ttggatatgg
    14701 ggattcaaat ttaaaaagag ttttaagttt gtatgctcat agattaagtc aaaggatttt
    14761 acaaaaagga cagagcatag gatatggagg catttttact gctgcaaagg atatggaagt
    14821 agcaacttat gatttgggtt atgctgatgg tctttttcgc tacaatggaa ggggggagtt
    14881 agtgcttgga aatggaaaag caatgcttgg aaagatgtca atggatagtt tttcttgtga
    14941 aaattctggt gaggaaattt gcgtgtttaa agatgctgat atttgggctg atttttttca
    15001 tactattaac tatgaaattt tagtaaaatt aaatcctaat attcaaagag ttctagtata
    15061 aatatgttta atatagtttt agttcaccct agaataccgc aaaatacagg tagtataggt
    15121 agaatgtgct ttaatgctgg ttttaaactt catattgtta aaccaattgt ttttgatatt
    15181 tcacaaaagg ctgttagaag ggcaggactt gattactggg ataaattaga gcctattatt
    15241 tgggagaatc ttgaagaatt tttgaatgaa aatatgattt ataaaaatcg cttttttttc
    15301 gcaacaacta agagtcaaaa agcttatttt gatgcagaat ttcaaaaaaa tgatttctta
    15361 ttctttggaa gtgagagtta tggtttgcct atggaattaa tgcaattaaa ttgggaaaat
    15421 gctataacta tacctatgaa atcttatgga agaagtttaa atttagccac aagcgttggt
    15481 ataatctctt atgaagcttt aagacaaaat tttagaaatt ttgcttctta aaagtttcaa
    15541 atttacacaa tagcttaaaa caaataaaat cataaagtcc tttttataaa aattatgt
//
LOCUS       DARBAR010000030        15302 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.030, whole genome shotgun sequence.
ACCESSION   DARBAR010000030 DARBAR010000000
VERSION     DARBAR010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15302
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.030"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            26..733
                     /gene="ubiE"
                     /locus_tag="SB815_000707"
     CDS             26..733
                     /gene="ubiE"
                     /locus_tag="SB815_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEG0906461.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVVWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IEAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKGGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKEEFILELKNAGFEMLD
                     YKSFSFGVSSMFIAKKL"
     gene            730..1893
                     /locus_tag="SB815_000708"
     CDS             730..1893
                     /locus_tag="SB815_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEG0906462.1"
                     /translation="MTPTELNLKAKALLETHFEDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPVVGDFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            1903..2979
                     /gene="serC"
                     /locus_tag="SB815_000709"
     CDS             1903..2979
                     /gene="serC"
                     /locus_tag="SB815_000709"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HEG0906463.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLALNGVCEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFRDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSHIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            2976..3326
                     /locus_tag="SB815_000710"
     CDS             2976..3326
                     /locus_tag="SB815_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG0906464.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGASKGDLIQIQIWLANMQDFDAMNEIYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3323..4297)
                     /locus_tag="SB815_000711"
     CDS             complement(3323..4297)
                     /locus_tag="SB815_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEG0906465.1"
                     /translation="MLKAGLKSIASYIPEKILSNADLEKMVDTTDEWITRRTGIKERR
                     IADENENTSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIVGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(4290..5276)
                     /gene="plsX"
                     /locus_tag="SB815_000712"
     CDS             complement(4290..5276)
                     /gene="plsX"
                     /locus_tag="SB815_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEG0906466.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNENATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIVNKTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKPSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINELIENELGKYNA"
     gene            complement(5282..5428)
                     /gene="rpmF"
                     /locus_tag="SB815_000713"
     CDS             complement(5282..5428)
                     /gene="rpmF"
                     /locus_tag="SB815_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEG0906467.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            complement(5452..5805)
                     /locus_tag="SB815_000714"
     CDS             complement(5452..5805)
                     /locus_tag="SB815_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906468.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EVYLSDYFYCINCNN"
     gene            complement(5806..6219)
                     /gene="ndk"
                     /locus_tag="SB815_000715"
     CDS             complement(5806..6219)
                     /gene="ndk"
                     /locus_tag="SB815_000715"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEG0906469.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIEFFFKPNEIC"
     gene            complement(6332..6616)
                     /locus_tag="SB815_000716"
     CDS             complement(6332..6616)
                     /locus_tag="SB815_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEG0906470.1"
                     /translation="MAVKITDICIACGSCIDECPVNAIVDDTNNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            6823..7419
                     /locus_tag="SB815_000717"
     CDS             6823..7419
                     /locus_tag="SB815_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEG0906471.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
     gene            7538..8635
                     /gene="flhB"
                     /locus_tag="SB815_000718"
     CDS             7538..8635
                     /gene="flhB"
                     /locus_tag="SB815_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002879724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HEG0906472.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMLSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGNQSF"
     gene            complement(8632..9375)
                     /gene="motB"
                     /locus_tag="SB815_000719"
     CDS             complement(8632..9375)
                     /gene="motB"
                     /locus_tag="SB815_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEG0906473.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKTP"
     gene            complement(9378..10154)
                     /gene="motA"
                     /locus_tag="SB815_000720"
     CDS             complement(9378..10154)
                     /gene="motA"
                     /locus_tag="SB815_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEG0906474.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTSE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            complement(10170..12809)
                     /gene="polA"
                     /locus_tag="SB815_000721"
     CDS             complement(10170..12809)
                     /gene="polA"
                     /locus_tag="SB815_000721"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEG0906475.1"
                     /translation="MKTLTIVDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISV
                     SQEGYEADDIIASFVKTCENRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFDLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAK
                     SYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            12973..14334
                     /locus_tag="SB815_000722"
     CDS             12973..14334
                     /locus_tag="SB815_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
                     /protein_id="HEG0906476.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGHLGDKHGRKNVMMA
                     TIALMGISTTLIGFIPSYAVIGVWAPICLVALRFMQGFGAGAELSGGTVMLAEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDKFGRCITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGVQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGSWWPIATYFVLTAGIGFVTTFFAPETRGRDLNKIE
                     DAI"
     gene            14331..>15302
                     /locus_tag="SB815_000723"
     CDS             14331..>15302
                     /locus_tag="SB815_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HEG0906477.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFQRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGTKGTWIHDALTIACALDSSIADFDECYADVICDSSL
                     ARGMSWRCFREPKMSMGVDLSTKNCVKILKNVDNARLLKLIKERLLKG"
BASE COUNT         4964 a         2242 c         2590 g         5506 t
ORIGIN      
        1 atttgaaaat ttacaaagga taaaaatgca aaaacaagaa aaaattatag aaatgtttaa
       61 tcaaattgca cctacttatg ataaggcgaa tagaatttta agctttggag ctgatgtagt
      121 atggcgcaaa aaagcttgtc aaagagtgat gagtttgtat ttaaaaaaag atttaaaaat
      181 cgctgatatt gcctgtggca caggggatat gatagagatt tggcaagaga gtgctttaaa
      241 aatggaaaaa aacattttaa atattaaagg tattgatcca agtagtggta tgctaaatgt
      301 tgcaaaagaa aaatttccga atgtcgaatt tatagaagca ggggcgcaaa atttgccttt
      361 agaaagtcaa agtttagata ttttaagcat tagttatggc attcgcaatg ttgtagaaag
      421 acaaaaagcc ttaagtgaat ttgctagagt acttcaaaaa ggtggtattt tggtagtttt
      481 ggaatttaca aaaagagaaa agggtggatt tatagcagct tgtagagatt tttatcttaa
      541 aaatatttta ccaagtatag gtgggataat cagtaaaaat aaaagtgctt atgagtattt
      601 gccaaactct attgaaggat ttttaagtaa ggaagagttc atcttagaac ttaaaaatgc
      661 tggttttgaa atgcttgatt ataaaagttt tagctttggc gtgagttcaa tgtttatagc
      721 aaaaaaacta tgacaccaac agaattaaat cttaaagcaa aggctttatt agaaacacat
      781 tttgaggata tagttttaag tggagaaatt tcaaaaatca ctttgcatgg ttcagggcat
      841 tggtattttg atttaaaaga tgaaagatca agcattgctt gtgctatgtt taaaggagct
      901 aatttaaaag tcggatttaa accagtggtg ggggattttt tagagctttg tggaagtgtg
      961 agtttatatc ctgaaagtgg tcgttatcaa tttatcgcta ctagtatgaa aaaagcaggt
     1021 tttggggatt tggaagcaca gtttttggct ttaaaagagc gtttgcaaaa agaaggactt
     1081 tttgatccac gctttaaaaa atctttgcca aaatttccta aaaaagtagg tattatcact
     1141 tcaaaaactt ctgctgcttt gcaagatatg ttaaaactta ttcatcaaaa agaatatttt
     1201 ttggcaaaaa tttatatttt tgatgcttta actcaaggaa ataatgctcc tttttctctt
     1261 atacaagctt taaaaaaagc cgatgatatg gatttagatg ttcttattat agcacgtggt
     1321 ggaggaagca gagaagatct tttttgtttt aatgatgaaa atttagcaag agagattttt
     1381 aaagcaaaaa ctcctattat ttcagccata ggacatgaga ttgattatgt tattagtgat
     1441 tttgttgcag attttagagc tccaacgcct tcagctgcta tagatacttt gttttattct
     1501 aagttggata tagagcaaag tttggattta atggaagaaa aattaatgca actttggaat
     1561 tataaaatac aaaattatga aaatttgctt ttaaatttaa gcaaattttt caaatttaat
     1621 tctttgccaa aaataataga tgaaaaaata aaacaaagcc ataatataga aaagcaatta
     1681 aatcatctat tggcaaatca aatgcgttat aatgaattaa aattagataa attgcaaaat
     1741 gcttatttgc aacatgagaa tttttttaat aaaagcaaaa agtttatttg tatcagaaaa
     1801 aatggtaaaa tagcaaattt agaagatctt aagagtgatg atatcgttat tttaagttct
     1861 caaacttctc aaaaagaagc aaaaatttta taaggataga ttatgagaaa aatcaatttc
     1921 agtgcagggc catcgacttt acctttagaa attttagagc aagctcaaaa agaactctgt
     1981 gattatcagg gtaggggtta ttctataatg gaaatttctc accgcacaaa agtatttgaa
     2041 gaagtgcatt ttggagcaca agagaaagct aaaaaacttt acgggttaaa tgatgattat
     2101 gaagtattat ttttacaagg tggagcaagt ttacaatttg ctatgattcc tatgaatttg
     2161 gctttaaatg gggtttgtga atatgcaaat acaggagttt ggacaaaaaa agcaattaaa
     2221 gaagcacaaa ttttaggtgt caatgttaaa accgtagcaa gtagcgagga aagtaatttt
     2281 aatcatattc ctagagtgga atttagagat aatgctgatt atgcttatat ttgttctaac
     2341 aatactattt acggcactca atatcaaaat tatcctaaaa ctaaaactcc tttgattgtg
     2401 gatgcatcga gtgatttttt ttctagaaaa gtagattttt cacatattgc tcttttttat
     2461 ggcggagtgc aaaaaaatgc tggaatttcg ggtttaagtt gtatttttat ccgtaaagat
     2521 atgttagaaa gatctaaaaa taaacaaatt cctagtatgt taaattattt gactcatgct
     2581 gagaatcagt ccttgtttaa tacgcctcca acctttgcca tttatatgtt taatcttgaa
     2641 atggattggc ttttaaatca aggcggactt gataaagtac atgagaaaaa ttctcaaaaa
     2701 gctgctatgc tttatgagtg tattgattta agtaatggat tttataaagg acatgcagat
     2761 aaaaaggaca gatctttaat gaatgtgagt tttaatattg ctaaaaataa agatttagag
     2821 cctctttttg taaaggaagc cgaagaagct ggaatgatag gacttaaagg acatagaatt
     2881 ttaggaggaa ttcgtgcaag tatttataat gcgcttaatt tggatcaggt aaaaaccttg
     2941 tgtgaattta tgaaagaatt tcaaggaaaa tatgcatgat aaagcgtttt gatgagtgcg
     3001 atagaatgtc gcaaattatt gtttttgata aatattttaa gactgcagga caagtggctt
     3061 ttgaacctag cggagatatt aaaaaacaaa ccaaagaagc acttgcagaa cttgatgctt
     3121 tgtttgaaaa aataggcgca agcaaaggag atttgattca aattcaaatt tggttagcta
     3181 atatgcaaga ttttgatgca atgaatgaaa tttatgatgc ttggattaaa aattatccta
     3241 aacctgttag agcttgtgta ggaagtgctt tagcagaggg ttatttggta gaaattcaag
     3301 cttttggaaa gctaagagag aattaaaaat tctctcctcc aaattttaaa agcgcagatc
     3361 cccaagtaaa accaccgcca aaagcatcta gtaagatcag atttcctttt ttaagtcgtc
     3421 cttcttcata ggcatcattc attgccatag gtatagaagc agctgaagta ttgccatatt
     3481 tttgtacggt aatcacacat ttttcatcgc ttagattgag tttttcttgg acggctttaa
     3541 tgatgcgtag attagcttga tgaggaataa aaagatcaat ttcttgtgct aaaatgttat
     3601 ttttagctaa aatttctaca acatcattgc taagcgtgtt tactgctatt ttaaaaactt
     3661 cattgccttt catttgcata gaaagtgttt gacatagact tgatttttgc gatctttgag
     3721 tcattaaaag atctccataa ttaccattgc ttgcagtatg tacatcaagg atatgatttt
     3781 cattgtccaa acttacaact ccagcacccg caccgtctcc aaagagtatg caaatgcttc
     3841 tgtcattgta atccataatt gaacttgttt tttcagctcc tacgattaaa acattttttt
     3901 tcaaaccact ttctactaag gctttagctt gttcaagcaa atagataaaa ccagaacaag
     3961 ctgctgaaat atcaaaagca ctaatattta caagtcctaa atttgaagca attttacaag
     4021 ccgttgaagg catagtaaaa taatcaggac ttaaagtggc tacaagaatc gcatcaatat
     4081 cttcaggttt taaatttgct ctttctatgg cttttaatgc agcttttgtg cccaaatcgc
     4141 tagtattttc attttcatcg gcaatgcgtc tttctttaat acctgtgcgt ctagtgatcc
     4201 attcatcggt ggtatctacc attttttcaa gatcagcatt gcttaaaatt ttttctggaa
     4261 tataagaagc tatgctttta agaccggctt taagcattgt atttcccaag ttcattttct
     4321 ataagttcat tgatatgaga ttggctaaaa tttatagctt gaaaaattgc atttttaata
     4381 gctctagaat cgctttttcc atgacttatg atcacgcagc cattaactcc aagaaggggt
     4441 gctccgccat attcttgcca atctgtgtgt ttttttaatt ttttaaaaga tggcttcata
     4501 agtaaagcac ctattttaga aataaaagat tgctttactt cgttttttag aagttgaaaa
     4561 atagctgttg ccacaccttc acaagccttt aagataacat ttccatcaaa accatcgcag
     4621 actaaaacat ctatttcacc attgaaaata tctctacctt cagcattacc tataaaattt
     4681 ggaatttttt tcataagctg atgactttct ttggtaagtt cattaccttt gcattcttct
     4741 tcaccattag aaagtaaagc aaggcgtggt ttttgaattt gcatgatttc tctagcataa
     4801 acttcaccca ttatggcaaa ttgaaataaa ttttcagctt tacaatctgt attagctcca
     4861 acatccaaaa gtaaagtttt gttaacgata tttggcatta aagtggcaat agcaggtctt
     4921 gaaatacctt taagtcttcc aagccttaag gtagccaaag acatacttgc tccactatga
     4981 cccgctgaaa ctacagcatc tacttttttt tcttttaata aattaatagc tttgtatatg
     5041 gttgtttctt tattttttaa agcatctgtg gcattttcat tcatcgaaaa aatttcacta
     5101 gcttcttcgt attgtatata ttgttctaat ttttttggta ttaaaggttt tagaatttta
     5161 gaatttccca ctaagatagc gttaaaaggt tttgcttcta gtgcctttaa aacgccttct
     5221 ataatgggtt tttctccaaa atcaccaccc attgcatcaa tggcaatgtt aatcattgat
     5281 tttaatattc cttagttgtt ggattcgcac ggtgaggcat tttgtagctt ccatctttgt
     5341 cttttatagg cataggaaga ctaactttat agtgagttct gcgtttagct gcacgagttt
     5401 tgctcactct tctctttggt actgccattt tttctccttt ataaaattta attaattatt
     5461 gcaatttatg caataaaaat aatcactcaa ataaacttca agctcgctaa tagcaacttc
     5521 tattaaatca atatgtccat cgaaaaattc tatagtattg ctcaattcgt ttgcttcatc
     5581 tttaaaaata ccatcacttg caaaaagttc taaattttct ttaatttcaa gttctaactc
     5641 agttccacaa ctatcacaag gtctatagat aaaaccttgc ataatagcat ttattttaac
     5701 aagcttagga tttattttta ctaaatttcc ctcaaaaatc atattttcaa gattaagttt
     5761 aaaaggatat tcctttgtat taatcttaga aaaagggatt ttcatttagc aaatttcatt
     5821 tggtttaaag aaaaattcaa tttctatttt tgcattttct aagctatcgc ttccatgaac
     5881 agcattagcg tcaatactct cagcaaaatc agccctaatt gttcctgctt tagcttcttt
     5941 aggatttgtt gctcccatta aatctctatt tttcaataca gcaccttctc cttctagtat
     6001 agaaacaaca acaggaccgc taatcataaa ttcaaccaag tctttaaaaa aaggtctttc
     6061 tttatgaaca gcataaaaat tttcagcttg ttctttacta agttgaactt ttttcattgc
     6121 agcgattctt aatccattgc tttcaaaacg atctaaaatt tttcctataa cacctttttt
     6181 aacagcatca ggtttaatta tagataaagt tttttccatc tttgtaataa ctccttattt
     6241 taataaagct taaaattata cttgaatttg tttaaagaaa gttaaattaa aagaaaaagc
     6301 taggaatctc tagcttttta attttttaaa attatgcaaa aactggagtg tccccacttc
     6361 tcatatcagc accaatatta tcacgacttg gttgtcctga ttctacagca ctccaaacta
     6421 tacatccatc tgttgggcaa gcactagcac aagctggttg atcattatgt cctacgcatt
     6481 caacgcattt gtttgcatag acataatatc tatcttcacc ttctggattg ttagtatcat
     6541 caacgatagc attcactgga cactcatcaa tacaagaacc acaagcaata catatatctg
     6601 taatttttac agccattttt tctccttatt taatattaag atttaaaaga ttttagcata
     6661 aaattcttaa ataaagtaaa ttttgataat caaaaattta ccttatttga taataattat
     6721 aactttttta aatttttaat attatcttag atatttaaaa aaaaataaag atttaaacga
     6781 tataatttcg ttatcaataa aatttattat ttaggagaaa atatgatagt tactaaaaaa
     6841 gctttagatt ttactgctcc agcggtatta ggaaacaatg aaattgttca agattttaat
     6901 ctttataaaa acataggtcc aaaaggagcg gtagtattct tttatccaaa agattttact
     6961 tttgtttgtc cttcagaaat tatagctttt gacaaaagat atcaagaatt taaaaaccgc
     7021 ggtattgaag taattggaat ttcaggagat aatgaatttt cacattttgc ttggaaaaat
     7081 actccagtaa atcaaggtgg tattggtcag gttaaattcc cacttgttgc tgatttaact
     7141 aagcagattg ctagaaattt tgatgtactt tatgcagaag cagttgccct tcgtggttcg
     7201 ttcttgcttg atgctgatgg aacagttcgc catgctgtgg ttaatgattt gccactaggt
     7261 agaaacatag atgaaatgtt aagaatggtt gatactatgc tttttacaaa tgagcatggt
     7321 gaagtttgtc ctgcaggatg gaataagggc gatgaaggta tgaaggctaa ccctaaaggc
     7381 gtggctgaat atcttggcaa aaacgaagct aaactttaat ttcttagtat aaagcctctt
     7441 catgaggctt tttctttatt tttattcttt aattgaaatt cataattttt ctattataat
     7501 tttacatata tattaaaatt tttacttagg ctaaaatatg gcaggcgaag atcaagaaaa
     7561 aacagaagaa cccacgtcca aaaagataga agatgcgcgt aaagaaggta atgttccaaa
     7621 gtctcaagat gcggcagcta ttgtaacttt gataattgga gtaactataa ctttatttat
     7681 gttgagtttt atgggcgaga gaattgtaaa tttatataga tactatcaaa gttttattgg
     7741 tgttgaattt gatttgcgta ttattcaagc cattatgatt aaaagcattt ttgaggtttt
     7801 aattattctt gcacctattg ttttaagtat tatgattgct ggggttttgg gaaatattat
     7861 gcaatttggt tttattttta caaccaaacc tattatgcca aatttaggaa aaatcaatcc
     7921 tctaaaaggt ttaaaaaatc ttttttcatt aaaaaaaatt gttgaaagta taaaaattat
     7981 tttaaaagtg ggtattgttt ttactatagc ttttatagtt ttgcttaaat ttatgcaaga
     8041 gctcccaaga gttgagcttt atactatggt tgcacagctt acttggctaa gagatagagc
     8101 tattgtttta gcagctattg ttatagttgc ttttttaatt attgctgttt tagatgtttt
     8161 tttggtacgt tttcagtatt ttaaaggttt gcgtatgagc aaacaagaaa taaaagatga
     8221 atataaacaa atggaaggag atcctcaggt taaaggtaga attcgtagac ttcaaatgga
     8281 agctgcgcgt cgtcgtatgg ttcaagatgt tgcaggtgcg gatgtagtga ttacaaaccc
     8341 aactcattat gctgtagcta ttcgttatga tacaagtaaa gaacaagctc ctagggttgt
     8401 cgccaaagga gtggattttc tcgctcttcg cataaaacaa gtagcctatg aaaataatgt
     8461 tgtagtttat gaaaatcctc ctttagcaag ggaactttat aaagcttgcg atgttaacga
     8521 tcttattcct agggaaatgt ttaaagctgt agctgaggtg ctaggatttg tttataatac
     8581 aaataataag agtcgtttag ctggtcaagt aaaaaaagga aaccaaagct tttaaggtgt
     8641 tttagttcct attttattga taagttcaag aaccgatttt tgagtacttg tatctgctgt
     8701 atcgacttta aaatatattt ctactctatt attttctaga gcttgtggat ttccattgat
     8761 gggattatta agcccgtagc ttttaatgct aatatttttc aaatttgctc caccttctat
     8821 aaaatatttt aatacatttt ccgctctttg gtaggcgagt tcataacttc ttataataga
     8881 gtcgctattg tctgtatagc ctctaatttc tatttttgct tgaggtggca aatatgttgt
     8941 tagctcagcc atacgtttta aataatcttg tatatcagct gaaacgattt gagcactacc
     9001 tctttcaaat tcaactttag atggaaggtt aagagcaacc tgattatcgc tttgatctag
     9061 agctgcttga agacgtttga tagtttcttg ctgtgtcata gtcatttgtt ttaacgattt
     9121 gagttcatcg ctttcttctt ttgctgcgcc tttatatttt tcttgggttt tactctcttc
     9181 tttgactgtt tgagtagagg tgtaatcaaa gattttaaca aattcagttt ttaaagcctc
     9241 tactttagca gggtttgttt tagaaattgc ccaaagagca ataaaaagtg ccaaaagcaa
     9301 acttagaaag tctgcataag gcacagccca tttttcacct gctggacatt ctgggcattt
     9361 atgtttttta gccattttta acctttgtca aattgtgaaa ttcttggatc atcgtgactt
     9421 aagaagttaa aaagtttagc ttctaaatct ctaggattag caccttctgc aattcctttt
     9481 atagcttcag taataacaat ttgctctttt acaagatcca ttccattagc ttttaatttt
     9541 ttcccccaag gagcaaaaag tgcataagcg ccaaaaattc ccgtaactgt agctgtgaaa
     9601 gcacctgaaa tacccgctgc cattgcttga ggattgtcta gcaatttaag agctagaata
     9661 agaccaaaaa ccgctccaac aagccccatg gtagggcaag tttctccaaa tactatccaa
     9721 tattctgcgc attctttata atgctcttca agttgttcgg tttgtatttc catgctttcg
     9781 tgaatttctt caaagctttt accatctaca agcatcatca tagcattttt taaaaattca
     9841 ttttcaatct cactggttct tgattctaac gctaaaagac catctcgtct tgcaataata
     9901 gcaaattcta ttaactgggc tatcctttcg ggtaaattta ctccagaacc tttaaaaaca
     9961 actttgagtt ctttgtaggc tgcttttaca atttttttat gcgtagaagt cattgcgcaa
    10021 aatgcagctg ttggcataac tatgagaaag gaagaaagat gcacaacatg caaaggattg
    10081 cctccctcta gtatatctcc taccgaaata ctagtaactg caagcaccat tcctaatatg
    10141 gttgaaagat ccattaatta tctccttgat tattttaaat cgccccaatt tttggcgata
    10201 cttgaacttg tttttaattt tacttttaat tttactatat tttccataat atctctagtt
    10261 ttttttacaa aattttcaca caaatcgtct tttacttcaa aaattaattc atcatgaatt
    10321 tgtaaaataa gctttttatc ttcatttaat tctttattga tttctagcat tgcaagcttg
    10381 attacatctg ctgctgagcc ttgcaagatt gaattaatgc tttctctttc atacatggca
    10441 atttgcatag gttttgcgtt ttcaaaatca aaataacgct tgcgaccgct taaagtaaca
    10501 ataaaaccat tttgtttagc ttcgttttta actttttcaa aatatttctt aatgctagta
    10561 aaattttcaa aatatttttc tatgtaagat ttggctaaat tagcttctat ttttaaattt
    10621 tgacttaagg ttttataacc cataccataa ataagtccaa aatttatact ttttgcaaca
    10681 cttctggttt cataattgct ttcaccaaaa atcattattg ctgttcttgc gtgtatatct
    10741 tcatcattgg caaaagcatt taaaagtttt tcatcttcgc taaaatgtgc aagtattcta
    10801 agttcgattt gagaataatc aagagagata aaactaaatc catctttagc tacaaagcaa
    10861 gatttataat cttttgcata ttgtccgtgt gcagggatgt tttgcaaatt tggatcctta
    10921 gatgaaagac gtcctgtagc ggttccagtt tgtaaaaaac ttgaataaat gcgtgaattt
    10981 ttatctttta acgctagttt taacaaaggt tcgcaataag tggaataaag tttggcaagt
    11041 tctctataat ctaaaatttt agcaattaca ggatgtttat ctaaaagtat atttaaaact
    11101 ttttcatcgg tagaatatcc tgtttttcct ttttttccgc ttgggagttt gagtttttca
    11161 aaaagtatat cacccatttg tttaggtgaa tttagattaa atctatcctc gcaaagagta
    11221 taaatttctt cacttaaatt tttgatttca ttttcaaatt ttttcataag gatttcaagt
    11281 gcatttgtat caagctttat gccattttct tccatcatca taatgatttt aatgaaatca
    11341 aattcgcagt ttttagcaag ttctaataaa ggagtttcaa gattttttaa aaaataaaga
    11401 taaaatctta aagtgatata agcatcttct gcagcgtatt tacaagcttt ttcaagttct
    11461 acacttgcaa aattttctcc ttttttaaca aggctttcaa aatgcaaggt ttcgtaatta
    11521 aaaagtctta aggctaaatc atccatattt actcttaaag aaggattttt aagccatgcc
    11581 aaaatcattg tatctgcgta tttttgaggt aaatttaagt caaaattgtt ttgaatgatt
    11641 ttaaaatcat atttgagatt gtgccctata acaaaatgat taaagattac ttctatagct
    11701 tttttggcac tttgcaatga gatttgctca cctactccaa gataattatg agttaaaggc
    11761 acgtaaaagg cttcattttc attcatgcaa aaactaaaac caacaatttt tgcttcttta
    11821 gtatcaagtc ctgtggtttc ggtatcaaaa gcaataatac tttctttatc aagggtattt
    11881 aaaatttcaa aaagtttgtt ttcatcttgt actaaagtgg ctttaaaacc taaattttta
    11941 tctttattat caggattttg acgcagtttt ttaagcaaag tattaagttc gtaatgttct
    12001 aaaatttcaa gtatttttaa aagaggttct tcatcaggat aagtggcttt ttctatgaga
    12061 ttttgtactt ctaaattgtc atacaaagaa gctaattttt tgcttaaaaa tgcattttcc
    12121 ttaccctcta aaagcaagtt acgacttctt tcgttacgta ctagggttaa attttcataa
    12181 attccctcta tgctaccaaa ctcatcaagc aaggttttag ctccttttgc acctatacct
    12241 ttaacgcctg gaatattatc agaactatcc ccacaaagag ctaaaaaatc tctgatttga
    12301 ttaggtttta ctccgtattt ttctaaacac gctgcttcat catagtcgtt tttagaaata
    12361 ggactgtaaa tgcttgtttt accatctttt atgagttgat aaagatcttt atcttgagtg
    12421 ataatacgta caaaaatatc tctattttca caagttttta caaaagaagc aatgatatca
    12481 tcagcttcat aaccttcttg agaaacgctt atgaaaccca ttttttctat catctttatg
    12541 caaattggaa tttgttctag aagttcaggt ggcggtggag tgcgattttg tttatagttt
    12601 ggatcaattt cgctacgaaa agtttttcct ttggaatcta atgcaaaaac aatataatca
    12661 cttttatatt cattttttaa gctataaata aaatttgcaa aaccgctaat cattccacta
    12721 gcttgtcctt gtgaattttt aaaacctttt aatgcgtagt aaagtctgaa aaaaaatcca
    12781 aaagtatcaa caatagttaa agttttcata ataatttctt cttttgataa aatatatttt
    12841 ttggttatat tatttcaaaa ttttgcttaa aatgtctcga aatttaaaga tatttaagcg
    12901 aaaatacttc aatttttagt cataatatcg agtagagtaa aaattttata tgaataatgt
    12961 aaggaaaatg taatgacaaa tcagcaaatt gatggaattg cagataagaa ttttaacaca
    13021 cctgaaggta gaaaagtttt taaaaaggca gttttttctt gctggttggg aactgctatg
    13081 gaatatgcag attttgcact ttatggttta gcagctgcaa caattttttc agaagtattt
    13141 tttcctgagc aaactccagt aattgcactt ttgcttagtt ttgtaactta tggcataggt
    13201 tttattgcaa gacctattgg ggctttgttt tttggtcatt taggtgataa acacggaaga
    13261 aaaaatgtta tgatggctac aatagcttta atgggaattt caactactct gataggtttt
    13321 atcccaagtt atgcagtgat tggtgtttgg gcgcctattt gtttggttgc attacgtttt
    13381 atgcagggtt ttggcgcagg agctgaactt tcaggtggaa cagttatgct agcagaatat
    13441 gctcctagca agagaagagg gcttgtttct tctgtgattg ctttaggatc aaatagtgga
    13501 actttgcttg cgtcttttgt atggcttttg atggtacaaa tggatgaagc aagttttaaa
    13561 gaatggggct ggagagttcc ttttatggga agtattttaa tcgctctttt tgctgtatat
    13621 attcgttttc atgtcaaaga aacccctgtt tttgaaaagc aaaaaaatga aatgatgaaa
    13681 ttgcgtctta ataacgaaaa gcatatgaaa aaagatgaaa gaagtttttg gcaaagaagt
    13741 cgtgcttttt ggactatggt gggcttaaga ataggcgaaa atggaccttc ttatcttgcg
    13801 caaggtttta ttgtaggtta tgtgactaaa attttacttt tagacaaatc agtagctact
    13861 acagcggtaa tgatagcttc attggtaggg tttttagtta ttcctttggc gggttattta
    13921 agtgataaat ttggaagatg tattacttat agaatgtttt gtttgctttt aatgatttat
    13981 gcttttcctg cttttatgct tttagatagt aaaaatgaaa ttattgtgat tttaactatt
    14041 attgtaggta tgtctttagc atctttaggg atttttggtg tgcaagcggc ttggggtgtg
    14101 gagctttttg gggtaaaaaa ccgttataca aaaatggctt ttgctaagga gctaggttct
    14161 attctttcag gaggaacagc gcctatggtg gcttctgctt tgcttgcata ttatggctct
    14221 tggtggccta tcgcgacata ttttgtatta actgcaggta taggttttgt gactacattt
    14281 tttgcgccag aaactagagg tagagattta aataaaatag aagatgcgat atgagactta
    14341 tcttagacac ggacataggc aatgctattg caggagcaaa tactgatgat ggtttagcac
    14401 ttgctttgat tttgtcatct aaagaaatca aacttgaaat gctaagcaca gtttgcggta
    14461 atgttccaag ccttgttgcc tatagtgtgg ctaaggattt atttcaacgt ttaaatttaa
    14521 atatccccgt ttatttggga gcgaatgaag ccctaaaaga accaagtaaa gcttggcgtc
    14581 aaagacttga tgaaagtgtt aaaaatttta aacttgaata tctttgggaa aatataaaaa
    14641 gtcctgaaat tttagaaaat ataaatcctg atgcgatttt taaaatgggt gagttggtga
    14701 gtaaaaatcc taaagaaatt tctatttgtg cgataggacc tttgacaaat atcgctatga
    14761 ctatgaaaat ttttaaagat tttgatataa atcttaaaga gctttttatt atgggcggca
    14821 gttttgatat gccttattac actaaagata caaattttgg ttttgatcct gaggcggcta
    14881 gtatagtgct aaattcaaga gctaaaatta cactcatacc ttataatgca accatgcaga
    14941 ctttattaac acacgaggat ttaaaagagt tgcaaggtaa gaatatttta tgtgatttta
    15001 tcgttgaaac tttaggtgtt tggattgatt atgcctctaa aacacgtggt acaaagggaa
    15061 cttggataca tgatgcttta acgatagctt gcgcattaga ttctagtatt gcagattttg
    15121 atgagtgtta tgctgatgtt atttgcgata gttctttggc aagaggtatg agttggcgtt
    15181 gttttagaga accaaaaatg agtatggggg tggatttaag cactaaaaat tgtgttaaaa
    15241 ttttaaaaaa tgtagataat gcaaggcttt taaaacttat aaaagagagg cttttaaaag
    15301 ga
//
LOCUS       DARBAR010000031        15301 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.031, whole genome shotgun sequence.
ACCESSION   DARBAR010000031 DARBAR010000000
VERSION     DARBAR010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15301)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15301)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15301
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.031"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..856)
                     /locus_tag="SB815_000724"
     CDS             complement(<1..856)
                     /locus_tag="SB815_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HEG0906478.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDHKLLNLVGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEKLESFLKTKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLTDKFIHASMIDGLRLGRADFFRFHHKDMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKRRYDKIKLYIDEAHSVGCFDEEGL
                     GLVKKLALENEVDFLVFTFGKALASMGACIICDEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKK"
     gene            924..2207
                     /locus_tag="SB815_000725"
     CDS             924..2207
                     /locus_tag="SB815_000725"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HEG0906479.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEARFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(2194..2799)
                     /locus_tag="SB815_000726"
     CDS             complement(2194..2799)
                     /locus_tag="SB815_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HEG0906480.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(2809..3123)
                     /locus_tag="SB815_000727"
     CDS             complement(2809..3123)
                     /locus_tag="SB815_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG0906481.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIITCTAGLKF
                     LS"
     gene            complement(3127..3465)
                     /locus_tag="SB815_000728"
     CDS             complement(3127..3465)
                     /locus_tag="SB815_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG0906482.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWQYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            3599..4135
                     /locus_tag="SB815_000729"
     CDS             3599..4135
                     /locus_tag="SB815_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEG0906483.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            4132..4677
                     /locus_tag="SB815_000730"
     CDS             4132..4677
                     /locus_tag="SB815_000730"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEG0906484.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHAKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            4679..5737
                     /locus_tag="SB815_000731"
     CDS             4679..5737
                     /locus_tag="SB815_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG0906485.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFASAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFF
                     APFLMLIMYYFFPVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            5781..6989
                     /gene="lysA"
                     /locus_tag="SB815_000732"
     CDS             5781..6989
                     /gene="lysA"
                     /locus_tag="SB815_000732"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEG0906486.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAAIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKNECEPDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQGEESLCDVVGGICESGDFFA
                     KARSLPSTQSDDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            6991..7758
                     /locus_tag="SB815_000733"
     CDS             6991..7758
                     /locus_tag="SB815_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HEG0906487.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLVIKENAYIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            7746..8819
                     /gene="pheA"
                     /locus_tag="SB815_000734"
     CDS             7746..8819
                     /gene="pheA"
                     /locus_tag="SB815_000734"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEG0906488.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            8809..9903
                     /locus_tag="SB815_000735"
     CDS             8809..9903
                     /locus_tag="SB815_000735"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEG0906489.1"
                     /translation="MKFNEFLNNLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAMDDDEFTE
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            9955..11637
                     /gene="fliF"
                     /locus_tag="SB815_000736"
     CDS             9955..11637
                     /gene="fliF"
                     /locus_tag="SB815_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HEG0906490.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            11637..12665
                     /gene="fliG"
                     /locus_tag="SB815_000737"
     CDS             11637..12665
                     /gene="fliG"
                     /locus_tag="SB815_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEG0906491.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            12673..13503
                     /gene="fliH"
                     /locus_tag="SB815_000738"
     CDS             12673..13503
                     /gene="fliH"
                     /locus_tag="SB815_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HEG0906492.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENTNISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFTKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            13496..>15301
                     /locus_tag="SB815_000739"
     CDS             13496..>15301
                     /locus_tag="SB815_000739"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEG0906493.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIALRYPRGSFILDKEFNPCEIKLGKAQWLVKNNSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKD"
BASE COUNT         5431 a         2017 c         2819 g         5034 t
ORIGIN      
        1 tttttttaaa aataaattgc gtccaagcta cattaatagg tggcaaggct gtagaataaa
       61 taaaagctct agccttgttg atgaaaaatt tcttatattt ttcatcacat attatacaag
      121 cacccatgga agcaagggct tttccaaagg taaaaaccaa aaaatccact tcattttcta
      181 aggctagttt tttaacaagc cccaaaccct cttcatcaaa acaacccacg ctgtgtgctt
      241 catctatata aagcttaatt ttatcataac gccttttaag ctcacacaga gttttaaaat
      301 cgctaaaatc tccatccata ctaaacaaag cttcgcttaa aacgatgata ttttcataat
      361 tttcataatg tttttggatt aaactctcta aatgattcat atctttatga tgaaaacgaa
      421 aaaaatcagc cctgccaagt cttaagccat caatcatact tgcatgaata aatttatcgg
      481 ttagaaaaag cgtcttagaa acgctagaaa gtgctgctat acaagagata tttagatgat
      541 agccactatt aaaatgtaaa atttccttat ctttaaattt agtctttaaa aaactttcta
      601 atttttcata aatttcaaaa tttccactca aacttcttga actcgaactt gaaaaaaaca
      661 aatcttgttc ttttagggtg tttaaaaact cagcttttaa ctctttggaa gacgccaaat
      721 aaagataatc atttcctact aaatttaaaa gtttgtgatc ttgcttataa acaaatttat
      781 tttcatgttt taaaggtgtt agagttctta gattgtgatt ttgctctaga tcttgcaaaa
      841 ttttttcaag cttcattttt ttcctgtaaa tttaaaaatt taaagtatta ttttgccaaa
      901 atatttttaa aaaagaagtt ataatgcaaa atcaaatctt aaaaaatctc gatttaaaac
      961 acatttggca cccttgcaca caaatgaaag atcacgaaac cctaccttta attcctataa
     1021 aaaaagcaaa aggtgtatgg ctttatgatt ttgatgataa agcttatatg gattgtgtga
     1081 gttcttggtg ggtcaatctt tttggtcatt gtaatgaaaa aatcgcaaat gccattaaaa
     1141 aacaagttga tgagctagag catgtgatct tagcaggctt tacacatgag cccattatca
     1201 agctttctgc aagactttgc gaaaaagtag gcaggaattt taacaaatgt ttttatgcag
     1261 ataatggatc aagtgctatt gaagtagcac ttaaaatgag ttttcattat catttaaata
     1321 agggagtgaa aaaaagtaaa tttttatctt taagcaattc ttatcatggt gaaaccttag
     1381 gagccttaag tgtgggcgat gtagcgcttt ataaagatac ttacaaagcc ttgcttttag
     1441 agtgtttaag cacgcctgtg ccacaaggca aagactacac taaagagctt gaaattttaa
     1501 aagatatttt agaaaaaaat gcaagtgaaa tttgtgcttt tatacttgaa cccttggtac
     1561 aatgtgcagg aaatatgcat atgtatgaag caaggtttat tgatgaggcc ataaagcttt
     1621 gccataaatt tggagtgcaa gtgatttttg atgaaattgc agtgggcttt ggacgcacag
     1681 gaactttgtt tgccttacat caatgcaaac aaagccccga ttttatctgc ctttcaaaag
     1741 ggataacggg tggatttatg ccactttctg tagtgcttac aagagatgaa atttataatg
     1801 ctttttatga tacttatgaa agccaaaagg cttttttaca ttctcatagc tatacgggaa
     1861 ataccttagc ttgcgcggca gcaaatgcgg ttttagatat ctttgaggat gaaaatattt
     1921 tagtaaaaaa tcaaatttta agcgagttta tcaaaaaaga attttcaaga cttgaaaaat
     1981 ttgacttttt gggtaatttt agaacttgcg ggatgatcag tgcttttgat attttaagca
     2041 ccaagtataa acgcgtagga ctttttgtat ttcaaaaagc cttagaaaaa ggtttgcttt
     2101 taagaccttt agcaaatacg atttatttta tgcctcctta catcatcaca aaagaacaaa
     2161 tcgtttatgt actagagagt ttagagcaga tttttaagga attttaagtt gtaaaatttc
     2221 ttgcatttgc tctttaaaat ctttatttaa aatgctattt tcatcaaaaa aatcaagatt
     2281 gattatagga atttttgcat aattttttat aaaatcatct tgtaagatat cttttttacc
     2341 catcattaca agggctaaaa gattgatatt tctttgcttt aaagcttcaa tgctaagcaa
     2401 gatatgatta atgcttccaa gatagtattt tgctaccaaa atcgtagggt gtttgaaaat
     2461 attcacaaaa tcaatcatag tgtaattttc atccatagga gaaaaaagcc cacccgcaag
     2521 ctcaataagt aggtttttgc tttttggtaa aatgatatct aaggctttat aatcaagctt
     2581 ttctttgatt tttccaagat gaggagaagc tggagtttgc aaaaaaatac cttctttaaa
     2641 aatctttgtt tttgggctaa attttgcaat aaactcacta tctgttggag ttcctgcttg
     2701 aatgagttta aaataatcat agttaaaatt cgcacaaaaa gctgcactaa aatgtgtttt
     2761 tcctacatca gtatgtattc cacttacata aatttgcaca aaaaatcctc aagaaagaaa
     2821 ttttaaaccc gctgtacaag taataatcac agcgattaaa aaaagtttca aaaaactttt
     2881 actttcttta taaaaaagca ctcctatcat taccccacca gcggttccag ctcctgtcca
     2941 tatagcataa gcaacgctca tagcgatatt ttgcatactt aagcttaaaa aagtaaaaga
     3001 aaatccaaaa cacactatca aagctaaaag gtaaagcttg tttttagtgc ttacaagttc
     3061 tttcatgatc accacgccaa aaatttcaca ggcagtagct aaaaacaaat aaaaccattc
     3121 catagtttaa gcttccttgc ttacccattt aagggctata atacttaaaa gtaaaattgc
     3181 tataagcaca agtttaatta tagaaacagc ttcgttaaaa ataaacattt catttaaaac
     3241 caccccaata gtgccaatgc ctacaaaaac actataagta atacttactt caagtctttc
     3301 gcaagctttt aaaaagcaag taaaagaaat acaaacccca atggctgtta aaatatactg
     3361 ccaaatttct gtagaatatt taagtccact tacccaaaag cactctataa ttccacctaa
     3421 gattattaaa aaccaagcta tattaatatt gaatttttca ttcacatgaa gccttaaatt
     3481 aacataatat ttgtaaaaca aattatatct taaagaaatt aaaagaagct ataaatttac
     3541 ttttccataa gccaaaatta gatataatca aagctcattt tttaagaaag gataaaagat
     3601 gttagaaggt atcgttagag agagtatcgg tagaaaagct gctaaagctt taaaaagaga
     3661 tggttatcta attgcaaaca tctatggaaa aggattagaa aacatcaatg ccgcttttaa
     3721 agtaaatgag tttattaagg aagttcgtaa aaaaactact ttaatttttg atgtaaaagt
     3781 aggttctcaa actttaagcg ttgtagttgt ggattatcaa aaagatcctg taactgcaga
     3841 acttaaacat gtggatttaa aagttgcgca aaaaggtgtg atttctaaat acatggttcc
     3901 agttaaaatc acaggaacag ctataggtct taaaaataaa ggtgttttaa ttcaatcaaa
     3961 aagaagatta aaagtaaaat gtgcagctga aaatttacca aatttcttcg aacttgatgt
     4021 aagtaaactt gatgtgggtg atgctttact tgttcgtgat attgtagttc ctgcgggagt
     4081 aactatgatt gatgctgata gagtagcggt tgtaggtgta gaaaaagcta gatgatttta
     4141 gtcgtagggc ttggcaatat aggcgtagag tatgaaaata cccgtcataa tgtcggtttt
     4201 atgctaattg acttactttt aaaagaaagc aattttacaa atcttacaaa ctctaaattt
     4261 aaaggagagc tttttaaaat aggttcttct ttacttcttc ttaaacctag tacttatatg
     4321 aataattcag gacttagcgt aaaagcagtg aatgattttt ataaatgcga aagaatgata
     4381 gttatccatg atgatataga tataaattta ggagccttgc gctttaaaaa aggcggttca
     4441 agtggtggac ataatgggct taaaagcata gatactttat gtggaaatga ctatgaaaga
     4501 gtgcgtatag gagtgggaaa gggtgaaaat gtgatttccc atgttttagg taaatttaaa
     4561 tccgaagaag aaataacttt aagcaaagtt ttagagcatg caaaaaaagc tttgcttgag
     4621 cttattgaaa atgatgattt gtctgctata tcatccaaat acagcctaaa ggcttaagat
     4681 gtggatattt tttcgtttta tttcagggat ttatttaaaa aattttttta ttatattttt
     4741 ttctttactt ggtttttatt gcggtattga tttgctctta aattttaaag atctaccaaa
     4801 agccgcaaat cttgatttgc tttatgttat gtttttatct ttttcggcag tgccttatgt
     4861 attacccatt tctttgattt ttgctttggt agtttctttg atttctatga tcagagcaaa
     4921 tgaatttgta agtctttatg cgttaggact gagtagaaat tatgttattt tatttccttt
     4981 tttatgggct ttattttttt gttgtattta tataggattg aattttactt cttttgctta
     5041 tgcaaatgat tataagagaa atattttgaa aaatggcact attatgaatc aaagtggaga
     5101 agtgtttttg aaatttaaca ataattttgt ttatatttca aagataaaca atggacaaaa
     5161 tagtgctcaa aatataaaaa tttttaatat taatgattta aatttaagct cttttgcaag
     5221 tgctaaaaat gcccattttg aaggtgaaag ctggattttg cgagatggta atattacatt
     5281 attacctaaa aattatgaac ttgctaatga tggtttaaag atacaagatt tctccgagct
     5341 taaatcactt gagggtttta aaccaaagat tatagaaggg gttgctagta atagtgatta
     5401 ttcaatatct gacgcacttg aaagttttga gctttttaag gcgcaaaatg tcaatacaga
     5461 tactcttaaa atcaatcttt ataaatttgt ttttactcct ttttttgcac catttttaat
     5521 gcttattatg tattattttt ttcctgtaat agcaagattt tttaatcttg cttttgtaac
     5581 ttttatagct tttgtagtga ctttgatgat ttggggagtc ttgtttttgc ttactagatt
     5641 aagcgaaaat agtgtgattg caagtgaaat tggcattgta gtgcctatta taattttggg
     5701 ttgtttaagt gcttatatgt attataagca tcgataaatt aagctttgtg tagtaaaatt
     5761 ataaaaatta aaggttaaat atggattata aacaattaaa gcaagaattt aatactcctt
     5821 tttatattta caattttgat ttcataaaag agcgtttttt aaatctcaaa gaggctttta
     5881 aggcaagaaa atctcaaatt ttttacgctg taaaagccaa ttcaaattta agtttgttgc
     5941 aaatgcttgc aaatttagat agtggatttg attgtgtaag tataggcgag gtaaagcgtg
     6001 ccttaaaagc aggagcaaaa gcttataaga ttatttttag tggagtagga aaaaccaaag
     6061 aagagttaag acaagcttta gaatatgata ttttatatat taaccttgaa agcgaagctg
     6121 aaatgatgct tttagaaagt gtggctaaag aacttaatct aaaggcaaga atcagtattc
     6181 gtgttaatcc aaatgttgat gcaaaaactc atccttatat ttctacagga ttaaatgaaa
     6241 ataaatttgg tgttgaaatt gatatagcaa gaaaaatgta tctttatgca aaaaattcat
     6301 cttttttaga gcctgttgga gtgcattttc atataggttc gcaactttta gatatttctc
     6361 ccattcatga agcagcagcc attgttgcaa aacttgtaag agagttaaaa gccttgcaaa
     6421 tcgatcttaa attttttgat ataggcggtg gtttgggtgt ggcttatgaa aaaaatgagt
     6481 gcgaacctga tctttatgat tatgcacaag gtatattagc acaacttcat gggcttgatt
     6541 taactatagg aatggagcct ggaaggtatc tagttgctaa aagtggagaa tttgtttgtt
     6601 cagtgcttta tgaaaaacaa aataaaacca agcgttttgt tgtagtagat ggagcgatga
     6661 atgatcttat acgcccaagt ttatacgagg cttatcatga aataatctta ccttataatc
     6721 aaggcgaaga gagtttatgt gatgttgtag gtggaatttg tgagagtggg gacttttttg
     6781 ctaaagcaag gtctttgcct agcactcaaa gtgatgatat aatggttatt aaaaatactg
     6841 gagcttatgg ttttagcatg agtagtaatt acaatactcg taataaagtt tgcgaattag
     6901 cccttgaaga aggacaggta agattgatcc gtcaaagaga aaattttgaa gatcaaatcg
     6961 ctttagaaga gaaattttta aaggcttaaa atgttttttt tagatgttca agggacttta
     7021 atttctgatc atgataaatc tttaatccat ggtgctaaag aactgatcga ttttttaaat
     7081 gcaaaaaatc ttccttatct tatcatcact aacaatacaa aaaaacttga ttttttagaa
     7141 aaattacagc aaaaaggatt ggttataaaa gaaaatgctt atattgatcc tttcagcgtt
     7201 ttaaaacacc ttttaagacc ttgtaaagtt gcggcttttg gtgcagatga gtttgtaaaa
     7261 agtcttgaaa atcttggttt tgagctcgat tttgtaaatc ctagtgctgt gcttgtggct
     7321 agttatgatg attttaaatt taaagatttt gccactatga tagaattggc tagaagagaa
     7381 gttagattta tagctatgca cgaaactagt atttataaaa aagatggtag gccttatcct
     7441 ggtgtaggta gcattatggc tatgcttaaa aatgctattg attttgaata cgaggttgtg
     7501 ggtaagccta gcattgcttt ttataaagaa gctttaaatt taataagaag acaaaattca
     7561 aaaattgatt ttgaagatat taaaatcatt agtgatgatt ttaggggtga cttgcttaag
     7621 gcaaaagaac ttggcatgaa aaccttgcta gttttaagcg gcaagataag cgacacaaaa
     7681 gggcttgata cggatttgct tgatggagtt tatcctagtg tttttgagtt tttaaaggat
     7741 ctaaaatgcc aaatttagaa gaatttagaa ataaaatcga tgcggttgat gataaaattt
     7801 tagatctttt aaatgaaaga atgacttatg ttaaaagtat aggtgagctt aagcaaagta
     7861 gtgggggaag tatttatcgt cctgagcgtg aaagagccat tatcaatcgt ttaaaaaatg
     7921 caaatttagg acttttagat caaaatgcca tagaggcaat ttatcaagaa atttttgcag
     7981 tttcaagaaa tttagaaatg cctcaaacta tagcttattt agggcctgaa ggaacttata
     8041 cacatcaagc agcaagaagt cgttttggtg cgatgagtcg ttatatagcc ttggctaata
     8101 tcgaagatgt ttttaaagag ttaagcaaca aagaagcaaa atatggtgtt gtacctatag
     8161 aaaataatac cgaaggtgca gtgggcatta ctttagattg tctaggtaag tataatgagc
     8221 ttaaaatttt tggcgaaatt tatatggata ttcatcattc ttttgtagga attaatgaaa
     8281 atttaaaaga aatcaaacgc atttattcgc atccgcaagg ttataatcaa tgtcgtaaat
     8341 ttttagaaag tcatgaactt agtgctatag aatttgttcc ttcaaaatct acagctaatg
     8401 cagcttacct agcttcgcaa gataaatatg cggcagcaat ttgttctaga atagcggcta
     8461 agctttataa tgtgcctgta ctttttgata aaatagaaga taatgcagcc aataaaacaa
     8521 gatttttaat tttaagcgat attaaaaatc ctaaaatgcc aaattgtaaa acttctattt
     8581 tagcacacac agcacataaa cctgggggac ttagcttttt attagagcag tttaaaaaag
     8641 aaaatatcaa tcttactaag cttgaatctc gccctgtaaa atcaaaagaa tttttacaca
     8701 gtttttatat agattttgaa gggcatattg atgatgaaaa tgtaaaaaaa gccttaaaag
     8761 atatacaaga gattgtttgg cttggatctt atttatcagg agaaaaagat gaaatttaat
     8821 gaatttttaa ataatttaag caattatgaa cccggcaaag atatagaagt tattgctaaa
     8881 gaatatggcg ttaaagaagt gataaaatta gcaagcaatg aaaatccttt tggcacgcca
     8941 ccaaaagcta tagaatgttt aagacaaaat gcaaacaaag cccatcttta ccctgatgat
     9001 agtatgatag aacttaaaag cacattggct caaaaataca aagttcaaaa tgaaaatatc
     9061 attatcggtg caggcagtga tcaagtgatt gaatttgcta tacattctaa gttaaattct
     9121 aaaaatgctt ttttgcaagc tggagttact tttgctatgt atgaaattta tgccaaacaa
     9181 tgtggtgcaa agtgttataa aactcaaagt attactcata atttagatga gtttaaaaaa
     9241 ctttatgaaa cgcacaaaga tgaaattaaa cttatttttt tatgcttacc aaacaatcct
     9301 ttaggcgagt gtttggatgc aagtgaggcg accgagttta ttaaaggtgt aaatgaggat
     9361 tgtttagttg tgattgatgc agcttataat gaatttgcaa gttttaaaga tagcaaaaaa
     9421 catttagaac cttgtgaatt gattaaagaa tttgacaatg tgctttattt gggaactttt
     9481 tctaaacttt atggattagg aggcttacgc attggttatg gcatagctaa tgctaatatt
     9541 attagtgcat tttacaagct tcgtgctcct tttaatgtga gcaatcttgc tttaaaagca
     9601 gcagttgcag caatggatga tgatgaattt actgaaaaaa ctttagagaa taatttttct
     9661 caaatggagc tttataaaga atttgctaaa aaacataata tcaaaattat cgatagttat
     9721 acaaatttca tcacttattt ttttgatgaa aaaaatagta cagatttgtc tgaaaaattg
     9781 cttaaaaagg gtataataat aagaaattta aaaagctatg gtttaaatgc tatacgcatt
     9841 actataggaa catcttatga aaatgaaaaa ttttttacag aatttgataa gattttaaga
     9901 tagataaatc aaataaaaat atgtaaaatt cgctaaacta agggatgaga attaatggat
     9961 tttaaaaata tgcttcatca aattgggcaa ctttatcaaa atttaactcg caagcagcgt
    10021 atagtgattg ctgcatctat tatagttgtg gttgggtttt tggttttttt agctttattt
    10081 cgtggaagtg gtagtaatgc aaataatgga tatgcagttt tagttgaaaa tgtaagccca
    10141 agttcttctg ctgcaattgt agctaaactt gaacaaaata atattcccta taaattagaa
    10201 agtgaaaata aaattttagt tccacaagat caggtttatc gtcaaagaat gtttattgca
    10261 agcgaaggtc ttataaaaga tagtcgcgtg ggttttgaag cttttgatac tcaagctttt
    10321 ggagctacaa atgaagagca aaaggtaaaa taccaaagag ccatagaagg cgaacttgca
    10381 agaactattg agactttaga acctattcgt agcgctgttg tacacatagc atttcctaaa
    10441 gatagtgttt ttactgaaag gcaaattccg cctacagctt cagttgttgt taatgttcgc
    10501 gaaggcttaa agcttactag aaaacaaatt gatggtataa aaaatattgt ttcagcggca
    10561 gttccaaaac ttactaaaga aaatgttaag attagtgatc aaagtggtgt gcctttagat
    10621 gagcaagaag catatgaaga tgacttggtt cgtgcgcaaa ttaaatttaa aagtgatcaa
    10681 gaaaaagctt tagaagataa gattatagaa aatttagctc cttttgcagg tggcatggat
    10741 aaagtaaaag tgagtgtaaa tatagatttt gatttttcca agcaagaatc tcaaagtgaa
    10801 atttatgatc caaatcctat agtacgtagt gagcaaactt taaacgagga aagaacaggt
    10861 agaaaagatc cagaaattca gggtgttcca ggtgctgttt ctaatatagg tcctgttgaa
    10921 ggacttgaca ataagggtca aattgacact tataaaaaaa atcaagttac tacaaataat
    10981 gaactttcta aaactatcac aaataccaaa aaacaatttg caacagtttt acgcacttca
    11041 gcagctgtta ctatagatgg aaaatatcaa gatgtggttg atgaaaatgg ggatgtgaaa
    11101 agcgaatatg tcccattgac taaagaagag cttgcaagtg ttgagagtat agttaaaaat
    11161 actattaatt ttagcgctac tagaggtgat agtgttgtgg tgcaaaattt accatttcat
    11221 cgtgagtcga ttagagttga gagtaaagtt aaaacttttt acaatcgttt tgttgagcca
    11281 tttattccgc cggttaaata ctttattgca gcgattttac tttttatttt ttacaaaaaa
    11341 gttattgctc catttactca aaaaatgctt gaagatgtcg cagcacaaga ggaaatgcag
    11401 caaggtccaa atgctgtttt agatgatgct gaagatgctt tagagaaatt taatgcagca
    11461 aggaaaaaag ttgaagaaca acttggtttt ggggataact tcaatgaaga ttctatccag
    11521 tatgaggttt tgcttgaaaa attgcgtggt ttggtaagtg ataaaggtga ggaaattgca
    11581 gcacttttgc aaaacttaat tcaaaatgat agcgaatttg gcgaaaagga tatgtgatga
    11641 taaagctaag tgaagaacaa aaaatggtct atgatgattt atcgatgcct gagaaggtag
    11701 cgatatttct tatacaactt ggcgaagatg caaccacttc tgtgttttca catatggaaa
    11761 ttgatgtaat cacagaaatt tcacgttata ttgctatggc taaaaatgtt gatagatctg
    11821 tagctactgc agttttagaa gaattttaca ctctgcttca atcaaatcaa tatattaaaa
    11881 gtggtggttt ggaatatgct aaagaaatac tttttcgtac ttttggacca gagattgcaa
    11941 ataaaattct tgaaaaactc actaaaagta tggagaataa tcaaaatttt gcttatttgg
    12001 cgcaaattaa accacagcaa cttgcagact ttattaccaa agagcaccca caaaccatcg
    12061 ctcttatttt ggcacacatg gattctattc atgcggcaga aactttagag tattttagcg
    12121 atgaattaag ggctgaggtg gttataagaa tggcaaatct tggtgatatt tctccaagta
    12181 ttattaaaag agtttctgca gtgctagaaa gcaagcttga aagtcttacc tcttataagg
    12241 ttgaagtggg cggcccaaga gcagtagcag aagtgcttaa tcgtttgggt caaaaagcaa
    12301 gcaaatcaac cattacttat attgaacaaa gtgatgaacg cttagcagag actattaaag
    12361 agcttatgtt tactttcgat gatatacaaa aacttagcac tcaggctata agagaaattt
    12421 taaaagtagc cgataagcgt gatttaatga taggtttaaa aggtgcaagt gaagagttaa
    12481 agcaaaaatt cttagccaat atgtctacgc gtgcaagcga agcttttctt gaagaaatgg
    12541 gttttttggg tgctgtgcgt gttaaagatg ttgaagatgc acaaagaaag gttgttgaag
    12601 tggtgcaaaa acttgcagaa caaggtcttg ttcaaacagg cgatgcggat gaaatgatag
    12661 agtaggtgag agatggttaa tcgtagtaat gtaatttctg gtggggcttc tgatcagcat
    12721 gttgttgaag gatatcgttt taaagttatt tcagaatttg ataatcatac aggtgaaaaa
    12781 aaacatactc aaactccaga tgaagaaaat actaatatat ctttaaatga cgaaaaacca
    12841 gtcgaagaaa atcaagtcat tgcctctaca caagctgtta tggaaactca aattccaaca
    12901 tttcaaccaa gctttgttga agatttactt aaaaaaacag atgaaatgtc aagcaatatt
    12961 attaaacttc aaatgcaaat agaaagccaa gagaatgaat ttaataaccg cttaaattca
    13021 gaacttgaaa atgctaaaga aaaatttacc aaagagggtt atgagaaagc aaaagaagaa
    13081 tttcaaaagg aattgagtga ttttaaagat aagtatttaa aaagtatagc caaacttgat
    13141 aatgcttgcg aaaatcttga aaatttcata gaaaaaaatg agaaagaatt agcagatact
    13201 gctatagata tcgctaaaga agtaatctta aaagaacttg aactaaattc aagtaagata
    13261 gcttatgctt tggctaaaga tttaatcggt gagcttaagg gtgctagtgc aattgagctt
    13321 aaggttaatg cagaggatta tgagtattta aaagagcaat ttgatcagaa tgctcatatt
    13381 aaaataagtc ttgatgatgc aattagcaaa ggaagtgttg ttattataag tgacgcaggc
    13441 aatatagaat ccaatcttaa ctctcgtcta actaaaatta aaaaaatggt gaataatgag
    13501 taaaaaattt gcccatactc aagaagagtt agaaaagcta agtttaaaag aattagaaaa
    13561 tttagcagca tctatgcgtg aaaaaatcat acaagttgtg agtaaaaatg gtgggcattt
    13621 aagttcaaat ttgggtgctg tagaacttag tatagcaatg catttggttt ttgatgcaaa
    13681 aaaagatcct tttatttttg atgtgtcgca tcagtcttat acacacaagc ttttaagcgg
    13741 aaaagaagaa atatttgata ctttaagaca aatcaatggt ttaagtggtt atacaaaacc
    13801 tagcgaggga gattattttg tagcagggca ttctagtacc tctatttctt tggcagtagg
    13861 tgcttgtaag gctattgctt taaagggtga aaagcgtatt cctgttgctt tgattggaga
    13921 tggtgcttta agtgcgggta tggcctatga ggctttaaat gaattgggtg attctaaatt
    13981 tccttgcgta atacttttaa atgataatga aatgagtatt tcaaaaccaa ttggagcaat
    14041 ttcaaagtat ctttctcagg ctatggcaac gcagttttat caaagtttta aaaagcgtat
    14101 tgctaaaatg ttggatatat tgcctgatag tgctacttat atggccaagc gttttgaaga
    14161 gagttttaaa cttattaccc ctgggctttt gtttgaagaa ttagggcttg aatatatagg
    14221 gcctattgat ggacataatt taggtgaaat tatttctgca ttaaaacaag caaaagctat
    14281 gcaaaagcct tgtgtgatac atgctcaaac cataaagggt aaaggctatg ctttagctga
    14341 aggaaaacat gctaaatggc acggggtggg agcctttgat atagatagtg gagagagtgt
    14401 taaaaaaagt gatactaaaa aatctgctac tgaaattttt tctaagaatt tgcttgattt
    14461 agcctcaaaa tatgaaaata ttgttggggt tacggcggct atgccaagtg gaacaggtct
    14521 tgataagctt atagaaaaat atccaaatcg tttttgggat gtggctattg cagaacagca
    14581 tgcagtaact tctatggccg ctatggcaaa agaaggattt aaacctttta ttgcaatata
    14641 tagcaccttt ttgcagcgtg cttatgatca agtgatccat gattgtgcga ttatgaattt
    14701 aaatgtggtt tttgctatgg atagggcagg gatagtaggc gaagatgggg agacgcatca
    14761 aggtgttttt gatcttagtt ttttagctcc tttgccaaat ttcactcttt tagccccaag
    14821 agatgaacaa atgatgcaaa atataatgga gtatgcttat ttacatcaag gacctattgc
    14881 tttgcgttat cctagaggga gttttatttt ggataaagaa tttaatcctt gtgagataaa
    14941 acttggtaag gcacaatggc ttgtaaaaaa taatagtgaa attgcttttt taggttatgg
    15001 acaaggtgtg gcaaaagcgt ggcaagtctt aagagccttg caagaaatga ataataatgc
    15061 taatttgatt gatttaattt ttgctaaacc tttagatgaa gagcttttgt gtgagcttgc
    15121 taaaaaaagt aaaatttggt ttatttttag tgaaaatgtt aaaattggcg gtatagaaag
    15181 tttaattaat aattttttac aaaaatatga tttgcatgta aaagttgtta gctttgaata
    15241 tgaagacaaa tttattgaac atggaaaaac aagtgaggtg gaaaaaaatc tagaaaaaga
    15301 t
//
LOCUS       DARBAR010000032        15243 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.032, whole genome shotgun sequence.
ACCESSION   DARBAR010000032 DARBAR010000000
VERSION     DARBAR010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15243
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.032"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..869)
                     /locus_tag="SB815_000740"
     CDS             complement(<1..869)
                     /locus_tag="SB815_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEG0906494.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     LVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTV"
     gene            complement(869..2641)
                     /gene="pglF"
                     /locus_tag="SB815_000741"
     CDS             complement(869..2641)
                     /gene="pglF"
                     /locus_tag="SB815_000741"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HEG0906495.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSRMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFIVEEKEKIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGKPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            complement(2643..3803)
                     /gene="pglE"
                     /locus_tag="SB815_000742"
     CDS             complement(2643..3803)
                     /gene="pglE"
                     /locus_tag="SB815_000742"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HEG0906496.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            complement(3899..4552)
                     /locus_tag="SB815_000743"
     CDS             complement(3899..4552)
                     /locus_tag="SB815_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906497.1"
                     /translation="MKKVFLWEYLQKGCKLHFNNNLVVHYIVNPSPLGWIVINLLTIC
                     LICYIFPLKNSLKHKKLFSLKANVNSKNSRIIKYTGIAAFLGGLIGIWYNFEGFYQLL
                     FFFELENENLKTLWSLQVSVSSVITGMLLLLIYVINLAMVCENGIYIVSKFNLFYMYF
                     IKREDLEIVKIEKMKFLNQVEVCFVIKTKNKILLKCFESIYKKEDLEKLKNWYENKL"
     gene            complement(4509..5096)
                     /gene="pglD"
                     /locus_tag="SB815_000744"
     CDS             complement(4509..5096)
                     /gene="pglD"
                     /locus_tag="SB815_000744"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HEG0906498.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFES
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM"
     gene            complement(5083..5685)
                     /gene="pglC"
                     /locus_tag="SB815_000745"
     CDS             complement(5083..5685)
                     /gene="pglC"
                     /locus_tag="SB815_000745"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HEG0906499.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            complement(5678..6808)
                     /gene="pglA"
                     /locus_tag="SB815_000746"
     CDS             complement(5678..6808)
                     /gene="pglA"
                     /locus_tag="SB815_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG0906500.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDFIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINSLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYVESEKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENIIAQRYLKLYDRVIKNV"
     gene            complement(6818..8959)
                     /gene="pglB"
                     /locus_tag="SB815_000747"
     CDS             complement(6818..8959)
                     /gene="pglB"
                     /locus_tag="SB815_000747"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HEG0906501.1"
                     /translation="MLKKEYLKNPYLVLFAMIVLAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASVANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKHLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFSLSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            complement(8963..10060)
                     /gene="pglJ"
                     /locus_tag="SB815_000748"
     CDS             complement(8963..10060)
                     /gene="pglJ"
                     /locus_tag="SB815_000748"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG0906502.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALM
                     ARMFGNKTRLVINECTTPSVMYMKNNFNSLVNKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSISPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            complement(10048..10977)
                     /gene="pglI"
                     /locus_tag="SB815_000749"
     CDS             complement(10048..10977)
                     /gene="pglI"
                     /locus_tag="SB815_000749"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HEG0906503.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAYR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            complement(10970..12049)
                     /gene="pglH"
                     /locus_tag="SB815_000750"
     CDS             complement(10970..12049)
                     /gene="pglH"
                     /locus_tag="SB815_000750"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HEG0906504.1"
                     /translation="MMKISFIIATLNSGGAERALVTLANALCKEHEVSIIKFHAGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKSDVFISFLDTTNIACI
                     AAKIGLKTPLIISEHSNEAYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     KLLLNPCHFSDEISFDSSFEKENLVLFIGRLDHNKNPVMFLKAIAHLDKNLQENYKFV
                     IAGDGQLRQELEYKVKSLGIKVDFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLVGCDDEIALAKKLELVLNDENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            complement(12046..13740)
                     /gene="pglK"
                     /locus_tag="SB815_000751"
     CDS             complement(12046..13740)
                     /gene="pglK"
                     /locus_tag="SB815_000751"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HEG0906505.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFISFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHAIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQNLRQE
                     EENLGEEKLSFNQELKICNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLPQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEMLVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            complement(13734..14720)
                     /gene="galE"
                     /locus_tag="SB815_000752"
     CDS             complement(13734..14720)
                     /gene="galE"
                     /locus_tag="SB815_000752"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEG0906506.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKTRAFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLKENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            complement(14778..>15243)
                     /locus_tag="SB815_000753"
     CDS             complement(14778..>15243)
                     /locus_tag="SB815_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ribonuclease H-like domain-containing protein"
                     /protein_id="HEG0906507.1"
                     /translation="DMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLE
                     SLGSNGRGIKLDTLCSMVGLPGKYDVHGDEVMKLFYENKLEKIHEYCESDVLNTYMLF
                     LKYELIKANVDEEDYVGFLSYMRDFLCAKKSDRSYTEVFAKACESEISKVRS"
BASE COUNT         5495 a         2855 c         1700 g         5193 t
ORIGIN      
        1 accgtaaata aatatacact taaacctaaa agaagcaagc tcactccacc gataagataa
       61 atcgcataaa tcatctgaga aagatcacca atagcaagtt taaataccaa catcaaagct
      121 tctatagcta aagcaatgat aatagaaccc aaaaatctca ccatagtttt ttgaattcca
      181 ccttcttctt ttttcgtcct tcctaatact tcttgttcga tcaaagtttt tgccaaatca
      241 aaaatagcta aagccaaagt tatagcgatg gtactttcaa acatatgttc tatacctata
      301 gcttgattat caaaaagact aaaaaaacct ttttgaaata aaaaacaagt aatcacaaat
      361 aaaaccagtg cgaagcaaaa atataccaaa cgactaaact gagtaaaaac aaattcaaat
      421 tttcctgctt gaataatctt taaaatatct tcaagcttga tatcaataca aacaacaaaa
      481 agcaagttat ttttatcatc gtaaattggc atagaagctg tcacgcaaag ctcattattt
      541 aaaaccgaag gataaggatc gctcaaaaca catcgtctta attttacagc tctataaaaa
      601 taagaacgag tacttctatc ctcaccctgc cctatttcat gagctttatt taaggaaatc
      661 gcattttcta tttgcatgcc tgaaatatct aaaatataca aagcatcaaa aacaacaact
      721 tcatgagcta ttttatccaa agctgtttta atcgtttcaa ggtgaatgtc aggaagttta
      781 ttgggcagat ttcttgttaa aatataactc atataagctc tagcacgata gcgattatct
      841 tcaaatcttt gtatatcttt tatatacatt atacaccttc tttattgtgt ttaaattcag
      901 gtacaatctt taataaagcc tctgaaatat cttcacatat ttgtaaattt tctatctctt
      961 tattaagcca atcaaggtca accttctcat tctttgctac aaaaatactc tcatattgtg
     1021 ttttagcatc attttcatca atcaaaagct cttcataaag cttctcacct tttcttaagc
     1081 ctgtgatttt aatttctaaa tcattgcgat tagaaagtaa aagcattttt ttagctaaat
     1141 ctatgatttt cacaggctta cccatatcca aaacaaaaag ttctccccct tttgcgatag
     1201 ctccagcttg taaaacaagt tgcactgcct cagccacaag cataaaataa cgcactatat
     1261 cagggtgcgt taaagttaaa ggctcattat tggcaatttg tgctttaaat ttcggtatca
     1321 cactaccact agaacctaaa acattaccaa aacgcacaca agcaacttca aaattttcat
     1381 cactcatact taaagtataa agctcgcaaa ctctcttagt gcaacccata atatttgttg
     1441 gtcgtactgc tttatctgta cttatcatca caaatttagc tactttgttt tctttagcac
     1501 tgtcgcataa aattttagtt cctaaaatat tattgattac tgctgaatgt ggattttgtt
     1561 cgcaaagagg cacatgttta taagcggctg catgtaaaat aagctcgggt ttataagttt
     1621 ttaatacctc atctaaactt tgcttatcta aaatactcag taaaatagga gtaatttttt
     1681 ctttatataa atttaaatca tcattgatct tataaagatt atactcacta tgatcaacca
     1741 tgataagatg cttagcacca aatttaatac attgcttaca aagttcactg cctatagttc
     1801 cacctgctcc acttaccaaa actaccttat cttttaaaaa agccgccaca gcactatcat
     1861 ctaaatcttt tggttttcta gcaagcaagt cttctatact gatatctctt gcttcgtttc
     1921 ttgtaaaaga aaatattttt acatcgcaaa taccataagc tacaagttct tcaaaaagtt
     1981 ttttaagctc ttcttgttca agtcttaaag caataatggc agtttttacc ccttgttcta
     2041 cataagattt tattttttct ttttcttcta caataaattt atcacaataa gtccctataa
     2101 gctcttttct cgcatcaact acgcctacag gaaaaagccc taaagaacct tcttttgcac
     2161 cttttaacaa atgcaaagcc ttagaagttg cccctactac aatacaagga gtttcttctt
     2221 ctttcattct agaaggttta aaatccacaa gcattctttt gctaattctt aaagtaccta
     2281 taaacatata agaaagaaca aaatctatca caatagcact tcttggaaaa ggattaaaaa
     2341 aatcactaaa aaaataaaaa ataagaaaaa aacaaaactc agctaaaagc aaagcgataa
     2401 aaatctttct tgcttcattg agagaaaaaa atctccaagc tactttataa attctaaaaa
     2461 caaacaaaaa tgaaagtttt aaaacaagca aaataatagc agaaaccatc ataccatgat
     2521 aaaaaatact cggaatatct ccactaaatc tcaaagaaaa agccagataa acgctaagta
     2581 aaattaaaac aatatctgaa gttaaaaaaa atgctaatct tttgctttta taaaaaatca
     2641 ttttaagcct ttatgctctt taagatcagt tttgaaattt cataaacatc atctttactc
     2701 atcgccgtgc cacttggcaa acaaattcct ttttggaaaa ataactcact attgccatta
     2761 agataagcct tagctccttt aaatacttct tgagcgtgca tagctttcca taatggtctt
     2821 gtttctattt gttcattttt caaatcttct atgagttttg aaatttttgg atgcaaagta
     2881 atattttttt gactgatatt tatatctttt tgacaagaat taagttcatt tttatcaaaa
     2941 tcaatcaaag ctgtacttaa ccagcgattg cttcttgaat tttctaattc atctaaaaag
     3001 ctaaaacact ctcctaaaaa ttctttatac cactcataaa tttctctttt tttaagcact
     3061 ctttgttcta aaacctccat ttgcgctacg ccaatagctc ctaaaacatt gcttaagcgg
     3121 taattataac cataatctaa atgttcataa tgcaaacaat tttccctagc ttgagtgcta
     3181 taaaatcttg ctttttcaat cttttcttta ttttttccta taagcatacc tccacctgaa
     3241 gtggtgataa ttttattgcc attataagaa taagctccaa attctccaaa agttcctaaa
     3301 gctttattct tataaaaact tcctaaagct tcagcagcat cttcgattaa aacaatttca
     3361 ttttctttgc aaatttcaac aatttcatcc attttagccg cattgccata aagatgagtt
     3421 aaaatcaatg cttttggttt tttttcacat tctttaatag caagctttaa taaatctaca
     3481 tcgatattat aagtttcatc acaatctata aatacaggtt ttgctttaag ataacaaata
     3541 ggtgctactg aagcgataaa agtaaaagaa gaagccaaaa caatatcatc ttgttttacc
     3601 cctgccaccc ttaaagctaa atgcaaagcc gctgtggctg aatttaaagc taaggcattt
     3661 tcacttttac tgtaagcctt gacactttgt tcaaagcgat ttacaaattc acccaaaggt
     3721 gctatataat tgcttttgaa aacttcttct atgtatttta attcattacc acccatatgc
     3781 ggaggagaaa gaaaaaatct catgatttat cctttgtgta aaacaaaatt tttataaatt
     3841 gactctattt tacctaaaaa aatttacaaa gattcaaata tttaaattct ttttatagtc
     3901 aaagcttgtt ttcataccaa tttttaagct tttctaagtc ttctttttta taaatacttt
     3961 caaagcattt aaggagtatt ttattttttg ttttgataac aaaacaaact tcaacttgat
     4021 ttaaaaattt cattttttct attttaacaa tttccaaatc ttctcgtttt ataaaataca
     4081 tataaaaaag attaaattta ctaactatat aaattccatt ttcacaaacc attgctaaat
     4141 ttataacata tatcaacaat aataacatac ctgttatcac agaagaaact gatacttgca
     4201 aactccaaag tgtttttaaa ttttcatttt ctaattcaaa gaaaaaaaga agttgataaa
     4261 aaccttcaaa attataccaa attcctatta atccacccaa aaaagcagca atacctgtat
     4321 attttataat cctactattt ttagaattta catttgcttt aagactaaaa agttttttgt
     4381 gttttaaaga atttttcaaa ggaaatatgt agcatattag acatatggtt agtaaattaa
     4441 tgacaatcca ccccaaaggc gaaggattta ctatatagtg aacaacaaga ttgttattaa
     4501 aatgcaattt acatcctttt tgcaggtact cccacaaaaa cacctttttc atcttgattt
     4561 ttaactaaag ttgctccacc acctaaaata ctatcatctg ccaaacttaa attaggcaaa
     4621 acacaagaat taatccctaa aaaacaattt ttaccaattt ttacattacc cgcacattta
     4681 gctcccacac tcacatgaga aaattcccct atcacacatt catgctcaat tacgcttgaa
     4741 gtatttaaaa tcacaccttt ttctatttta gctttagcgt taatcactac ataaggcatg
     4801 attaaaattc ctgcattttc ttccacgatt gcgctaggac ttataagcgc gcttttatgg
     4861 ataagattga caattttaaa gccattttct gaaatttttt gataaatctt ttttcgaatt
     4921 tcattgtttc ctatggctat aaaaaaatca tatttaggta aggtactttc aaatttcatt
     4981 cctttaaaat catctaaaaa aatacattct ttataaccca tatttttagc cacatcttca
     5041 caaacaagcc catgaccact agcaccataa atataaattt tttcagttct tgccattaaa
     5101 tttctctgtt gtaacatggc cttctttgct taccccactt cgttttaaaa cctttaaagc
     5161 tgttaaaaac atgattttta aatcaagcaa aaaagaaata tttttcacat aatacacatc
     5221 aagttcgaat tttttctgcc aagaaatagc atttctacca tttacctgcg cccatcctgt
     5281 tatacctgga cgcactttat gacgcaattt ttgctcttta ttgtaaagag gcaaatactc
     5341 aaccaaaaga ggtctaggtc caacaaaact catatcccct tttaaaacat taaaaagttg
     5401 caaaagctca tccaaactta agcttctaac gatttttcca aaagctttca aacgcaattc
     5461 atcgcttaat aactcaccct tttcatctct ttcatcgctc atggttttaa atttataaat
     5521 tttaaaaatt ttttcatcta acccgggacg attttgggta aaaatcacac ttccttgagt
     5581 gatttttaaa agtaaagcag tgattaaaat caccggagaa aaaagcacta aaagcactaa
     5641 agctaaaata aaatcaaaaa ttcttttaaa aactttttca tacattctta attaccctat
     5701 cataaagttt taaataacgc tgtgcgatta tattttcatc gtattgtaaa gcatcttggg
     5761 cggcattttt agctaaattt aatcttaatt tttcatcttc taataaaagt gaaatttttt
     5821 cgcttaaatc tttagcattt tttgtttttg cccaaagtcc atcataagca ttagaaatag
     5881 cctccacaca accttcacaa tcactcacca ctatagcctt accgcaagct tttgcctcca
     5941 aaacacttac aggaaagcct tctttatagc ttggcaaaac aaaaatatca caattttgca
     6001 aaagctcgac tatatcactt ctagcaccca aataatgcac cgcgccagag tttaaaaact
     6061 ccaaacttgc acaagaagga ttttcatctc ttccaccaac taaaacaaaa tttgctttgt
     6121 cttttagcat agtagcactt tcataaaatt cttttacacc cttatgccat aaagctcttg
     6181 ctatcataag cacaatgggt tttttatcta tgtttaaatt tttccaaaaa agctcttttt
     6241 tttccgattc tacataaata ggaaaaaatt tttttaaatt gatccctaca gattttatca
     6301 cgcaaatttt attttcttta agtcctaaat tccgcataaa ctcagcatta ctttcattga
     6361 caaaaataaa ttggtgtgca aatttaaaac ttaatttata aagactatta ataacaaaac
     6421 gcactaaatt tgccttaaaa ccttgatcta tataaaaaga tcccaagcct tctactaagg
     6481 caaaacgata aggaattttt gcccattttg ctgctaaaat tccaaaagta ttgcttttgt
     6541 gtgccgcact ttgaataaaa tcaagattta aatttttcaa aaccttagca agataaaaaa
     6601 aattctttaa aaccacaaaa ggatttaaac tagctcttga aaactcataa acaattactt
     6661 ttaagccaag atctctaagt ttttgcgtgt attcatcttg cggcactata acaaaaactt
     6721 cgtcttttct atcttttaac gcttttataa taggcattct aaaatgataa atactcgctc
     6781 ctgcatgtga taaaaatcct attctcattt tcaaccctta aattttaagt ttaaaaactt
     6841 tagcatctct agaattaatc accaagtcaa ataaattctt atcataattt cccaaaaaaa
     6901 acatttgcac ataagcacta ttaaacatgg ttttatccat taaaataaat tgtgcgtaag
     6961 gaatagcact atcctttaaa taaaaaatat aaaactgagc cttatcatcg attggagtga
     7021 ttttgtattc accttgttta atagaattaa tctctacgat actatttaca gaaaccacat
     7081 tatcacctat tttaaaactt ctaaaatcat cgcttaaaac cactccgttg ctaagataaa
     7141 tttctccatt tttaacatca agtggataag ctgtgctaaa ggtaaaaggt ttatccaaaa
     7201 ctcctgtatc taaattaata aaagaaaaac tagccaccgt agaaaaaatc aaagacattc
     7261 tagcgggcat ataaagataa atatcacgag tttttggtgt atcgatttta aaatcaggtt
     7321 ttgataatga agctagaaat aaatccacat tgctttgatt ataatctttc atcatggctt
     7381 gtaaaatgtc tgattttaaa atatcatttt gcggagcata aaagcttttt tctgtatatt
     7441 ctacactaag tcttgccata ttagctgcag cttgttcatc tttacttaaa gaaaaagaag
     7501 ggaaaaaatt atccttacct aaatgctttc caccatctac taaagttttc acatcgctat
     7561 aataacgcac aggataacca taatcccacc aagttaccac ataatcttct ctattggcta
     7621 tattttttaa ttgatttaat aatgatgctt cattttgaga aaaaactgtt ggcgctttat
     7681 agttgtaaat atggataaat actggagcca aagtcaaaat agttgcaaaa acaatacaaa
     7741 catttgaagt taattggcta tattttttaa ccaatatagc cttaaactcg ctcaataaaa
     7801 aaccaaatcc taaagccatt acaggtacag aataaatggt aaatctaagt cctcctttta
     7861 aggctaaaaa cccaagcacc aatataggta aagccataat catactttta tgttttctca
     7921 aaagccatac aaaaccaaac aaagaaaaca agaaaacaat ttcactacca ctaattcttc
     7981 gcataaattc gctaaaatct acattttcaa cttcttgtat ggtttgatta acattaaaat
     8041 acataaagcc ctgtgttaaa ttcgcacttt catcgcttct aaaaatataa aatttaagct
     8101 gataaagtat gggatcaacc ccaccactta aaatcaaaaa tatcaaagtt gcactaccta
     8161 aaattcctat aatcataaaa tttaagtgtt tttgctctaa agcaaataaa gcaaaaagta
     8221 ttactataat ggcactttga taaaaccatg ctatatttga aagagtaaga gaagacaaaa
     8281 tcacagctat ataaaaaatc ttttcttttc tatgaaaaat aagtgtataa attaaaaaaa
     8341 gtccaattaa agctacattt aaagtataac ttgaaggata ccaccaaaga taaattccta
     8401 taaataatgg caaggcaatc aatgaaaaaa agtctttttt taaaatcatt cttaccataa
     8461 aaaataaaat aaacataggt aaaacaatta ccagcatatc cgtatcataa tacccactca
     8521 tagtgcgatt ataataactg tttgctacac ttgctaaaag agcagctaca aagcccatta
     8581 aagggcgttt gtattcatta gctagtaaaa taataggaat caccaccaaa gaagataaaa
     8641 aagtactcat atataaaatg atactttcaa aagaaaaagg tgtgatttta taaagccaat
     8701 aagtaagcgt agataaagaa gatccataat aactcaaatc attaggctga tgaaaacctg
     8761 ctatcatatc tcttgcgccc tcagcaaaag catagccatc gtttgaaatg atcattaatt
     8821 gattattgaa aaaatactcg ttaaactcac ttgcccacca aacccaataa aacctgcaaa
     8881 atacactaaa aacataagct aatacaatca tcgcaaacaa aactaaataa gggtttttta
     8941 aatactcttt tttcaacatc ttttatccta ataaatattt caaagcatcg cgtgcaattt
     9001 ttactttatc aaaggcttta gccctagttt tagctttgtt tttatacgct tttcttaatt
     9061 tatcgtcttc aagcatagtt tttaaaccct gaaacataga gttttcatta tctacttcta
     9121 ctaaaagtcc aaattcatca tcgccaaaaa gctctcttgc accactttta tgatcagtgc
     9181 aaaccaccgc acaagaacaa gccaaacttt cgattaaaac atttgaaaaa ccttcaaaca
     9241 cagaagcaaa agcaaaaaat tcgcatttag ccatgtattt ataaggatta ttatcaaatc
     9301 ctaaaagcaa aaccttttct tccaaattta attctttaat caaagctaaa agctcatcct
     9361 taagcacacc ttcacctaaa atcacaagct ttaaatctgt tttcaatctc gcataagcac
     9421 gaattaataa agcatgattt ttacctttat caagcctgcc tacacttaaa ataaatttat
     9481 cttttaaagc tatgtcttca agggcttttt gccctatgtt ttctaaatcg atggcattgt
     9541 ataaaatttc acattttttt ggacttatac taaaattttg cactaaatct tctaaatttc
     9601 ccttagaatt aggcaagatt aaatcagctt ttgggtaaag caaagaaatt aaaaatttat
     9661 ttaccaaaga attaaaatta tttttcatat acatcacact tggcgtagtg cattcattga
     9721 tcacaaggcg agttttgttt ccaaacattc ttgccattaa agctatataa ttaggtcgat
     9781 ttaaaaaaac aaattctgta tcaataccta aatttctgca aagttttttg tattttaaag
     9841 ccaaaaaagg tagttttaaa aatttcaaaa taggattttc actaggtttt gaacattcta
     9901 aaaaatgaat ttgacactct ggaatttcat aagaaatttt atcattcatc aagatcaaat
     9961 gcacttcaaa tttcaaactt aaaataggca ataaagtcgc cacaactctt tcagcaccac
    10021 cacttcctaa agaataaata aaaatgccta atttttgcat aaagccaccc gaatttttga
    10081 taatttttca atcatattat ttggaattat acttaaaatg agtaatatca aagcaggagc
    10141 gttgattttt atacttaggc ttttaaacaa acatttataa agggctttat aattttttgc
    10201 aagttttgca taataagctg ccattttata ataactcgca caagtttttt tataatcttt
    10261 atccttactc attctaagtt cattttctaa aattttagca agctctaaat atcccaaata
    10321 caccctataa gcatttttac tcgcccctaa agtcacgcta tcttgcctaa aaattctata
    10381 aatcctaaaa gccttatgga tataaaaact tttttctttg tataaattta cccaaagcgt
    10441 ggcttcattg ccataaaatt cttcattaaa acgcttattt tcaagtaggg attttttaaa
    10501 aacagaaaaa aactctccgc taaatttagc cattaaaaaa tcttttttag aaatttcact
    10561 atctttttcc aagcccttgc cgctaaattc cttgcttaaa tttccttctt tttctatcaa
    10621 acaatttcca aaaacatgag cataaccctc atttgctttt tgcatcaagg tacttaaagc
    10681 cccggataaa agctcatcat catcatctaa aaaagttaca aactcgccac ttgcttgatc
    10741 taagccattg tttttattgc catttggacc ttgtttgtaa ttttgattta aaaaatactt
    10801 aatgcgatca tcatcttttt gtaaattttg caccacactt ttagtatcat cgctagaatt
    10861 atcatcgctt acaataattt ctaaatcttt aaaatcttga ttttgtatgc ttttaatagc
    10921 cttttctaac aaaacttgac gattaaaagt tggtactata acagaaagtt taggcatttt
    10981 taacctcggc tataagctta agccattctt ctttgatatg agaaatttca aagtctttac
    11041 acctttgttt ggcattattt acaagttctt ttctaaaatt ttcatcattt aaaacaagtt
    11101 caagtttttt agcaagtgct atttcatcat cacaacctac caaaagccca tcatgattat
    11161 ctttgattaa atccttagca ccattataat aagaacttga aattctacaa acctcaaaat
    11221 acaaactttc aattaaaacc gttggcaaac cctctacaaa agaacaaagg caaagcactt
    11281 ttgctttttc ataaagagcc ttgacatttt caacgcgtcc taaaaaatca acttttattc
    11341 ctaaagattt taccttatat tcaagttctt gtcttaactg tccatctcct gctataacaa
    11401 atttataatt ttcttgtaaa tttttatcca aatgcgctat agcttttaaa aacattacag
    11461 ggtttttgtt gtgatctaaa cgccctataa aaagaaccaa attttccttt tcaaaactag
    11521 aatcaaaaga aatttcatcg ctaaaatgac aagggtttaa taaaagctta acccttttta
    11581 caaatctttc ataatacacc ttatcactgc ttccaagcac acttaaagca tcacaaaaag
    11641 gatagcttac ccttcttaaa aaacgccaaa ttttaggttt taaatacgct tcattgctat
    11701 gctcacttat aatgagtgga gttttaagcc ctattttcgc agcaatacaa gcaatattag
    11761 tcgtatccaa aaaagaaata aaaacatcag acttactttc tttcaaagcc tttcttaaag
    11821 caaaaaattt cttaaaacga cttgcgattt tatgataaag cgtgtcaaat ctaaattgtt
    11881 ccaaacttgt aactttaact tcattttcaa gcttataaaa agattctcct gcatgaaatt
    11941 taataatact tacttcatgc tctttgcaaa gtgcattagc taaggttact aaagcacgct
    12001 cagcacctcc tgaatttaaa gttgcgataa taaagcttat tttcatcatt tctcctcttt
    12061 aagcttaccg tgttctaaac gataaacctt atcacattgt gttatcgtag aaaggcgatg
    12121 tgcgataata atcatggttt tatctttaga aattttataa atttcatcca taatttttgc
    12181 ttcactttga gtatcaagcg cagaagttgc ttcatcaagc actaacattt caggctctaa
    12241 atataaagct cttgctatag ctatgcgttg tttttgtccc ccgcttaaat tactcccccc
    12301 atcgcccact tttgtttgca ctccttgagg taaatttttt ataaaatgct ctaaatttgc
    12361 ttgtttgata accctattaa gtttttcttc atcaaccgca tctccaaaag tgatattttt
    12421 agctatactg tcattaaaaa gatagatatt ttgcgggata tagcctattt tttggcgata
    12481 attttttgta ttatttgcat ttaattcttg ctcatcaatt aaaatttgcc cttcttttgg
    12541 ttttaaaagt cctatgataa gatctactaa ggtacttttt ccacaaccac tctcccctat
    12601 aaaagcgatt ttttcgcctt ttttaatatt taagttaaga tttttaaata aatatttttt
    12661 tccctcataa ccaaagctaa gattgcaaat tttaagctct tgattaaagc ttaatttttc
    12721 ctcgcccaaa ttttcttctt cttgtcttaa attttgataa ataatatcca aagaagaatg
    12781 ataataaagc aaatcatgat aacttgtaat aatacgattt gcacttggca ttaagcgata
    12841 aagcgctaaa acaaaaatag aaatcgtgga taaaatacct gaaatatcac tttcattttt
    12901 caaaaccaaa aataccacga taaaaacaag tacgcaaaag cctattcctt caagataaat
    12961 tctaggcacc gcagctacgc tttcgttggt aatatttgct ttagaaaaag cttcactttg
    13021 cgctttaaaa agacttaata ctccatcttc tttggtttta agcttaataa atttgaaatt
    13081 atttaaattt gtatttaaaa tttcaaagaa atttttcatc gcttcttcgc gtcttactcc
    13141 tgctttttta atgatagggc ttaaaatttt cactaaaata aaggcattta acaccataaa
    13201 aatacttaaa aacaaagtga ttttataatt aatcaaaagc attaaagcat aaagcaaaag
    13261 tactacaaaa atttcactca tcaaaagtaa aaatgatgaa atcatagtgc ttagattata
    13321 aacttcccct gtaatggact ttaaaatttc agattgattt ttttgagtaa atttttcata
    13381 attaatattt aaaaatttag aaaaaacctt ataagcgatc gcatgataac gccctttaga
    13441 aaatcttgcc aaaagatgaa aataatacgc atttaacaaa gctctaaaca cataaaaaac
    13501 aataagcccc actccaaaat aaacaatgat ttcaaaaaca gggatattaa gatattcttt
    13561 taggctgatt aaatatttat tacgatcaaa ataagaaaaa tcactagcca aagtgataaa
    13621 aggcattacc aaagaaattg caaaagtttc tataaaagaa ataaatactg aaaaaacaag
    13681 caagaaaaat aaaaaatttt tatcttcctt acttaaaata aaaaaaagtt tttttaacac
    13741 tgtttttccc aatcaaaagc agatttacaa ataagctcta aatcatcata tttaggctgc
    13801 caagaagtaa gatttctgat tttacttgca tcagaaatca atacactagg atcacccgca
    13861 cggcgtgggg caagttctac tttaaaatcc actccgctaa cttttttcat cgcttcaatc
    13921 acttctttta cgctaaaacc atgtccataa cctacattaa aaacattgct ttcattctct
    13981 tttaaataat ccaaagccgc taaatgtgca cttgaaatat catctacatg gataaaatct
    14041 cttatgcaag taccatcttt tgtatcataa tcatcgccaa atatgaaaag tttatcacgt
    14101 tttcctgcgg cacattcagc tgcaactttt ataagcaaag tcgcttttgg atagcgttgt
    14161 cctaaagtat aatccataca agcacctgca acattaaaat atcttaaaat acaatgctta
    14221 aattcaggat ttgccatact tgcatcacgc aaaacttctt cactcataag cttactacgc
    14281 ccataaggat taataggtgc taaaggactt gtttcgctca caacgggagt ttgtggttcg
    14341 ccataagtgg ccgccgttga agaaaatata aatttattca ctccagtttg caaacaagtt
    14401 tcgatgagat ttgtcgtatt aacagtgttg ttcatataat attttaaagg attttgcata
    14461 ctttcaaaaa cttcaatgct tgctgcaaaa tgcacaatag cgtcaaattt ttctctctca
    14521 aacaatgctt ttacgccttg aaaatcactt aaatcttgtt cgaaaaattt aaaagctctt
    14581 gttttttgca aatcttctat tgcgatttta gaacccttag aaagattatc taaaacacaa
    14641 atttcatgat ctgtttttaa aaattgtctt aaagtatgag aacctatata acctgcacca
    14701 ccgctaataa gaattttcat catcattcct ttttttaaaa atgtcaaaaa taaattttaa
    14761 tatattttct taaatactta agatcgaact tttgaaattt cactctcaca agcttttgca
    14821 aaaacttctg tataagaacg atctgatttt tttgcacaca agaaatctct catataagaa
    14881 agaaaaccaa cataatcttc ttcatcaaca ttagctttaa taagttcata ttttaaaaaa
    14941 agcatatagg tgtttaaaac atcactttca caatattcgt ggattttttc aagtttattt
    15001 tcataaaaaa gtttcattac ctcatcgcca tgcacatcat attttcctgg caaacccacc
    15061 atagaacaaa gtgtatcaag ctttattcca cgcccgttag atcctaagga ttctaataaa
    15121 tcacaatgtt ttaattctga aaatcttgtt ttataattat tccatttatc actttgagta
    15181 tccaaataag ttgctgcttt taaattgtat tttaaagccc ttaaaacaag aacaggcata
    15241 tcg
//
LOCUS       DARBAR010000033        14661 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.033, whole genome shotgun sequence.
ACCESSION   DARBAR010000033 DARBAR010000000
VERSION     DARBAR010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14661
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.033"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..578)
                     /locus_tag="SB815_000754"
     CDS             complement(<1..578)
                     /locus_tag="SB815_000754"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEG0906508.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLNIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLL"
     gene            complement(565..855)
                     /locus_tag="SB815_000755"
     CDS             complement(565..855)
                     /locus_tag="SB815_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HEG0906509.1"
                     /translation="MIKILEQTIKALKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHLEMKGFNIYVAL"
     gene            complement(852..1850)
                     /locus_tag="SB815_000756"
     CDS             complement(852..1850)
                     /locus_tag="SB815_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0906510.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTTILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQIIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIVVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNAQVFKLSEAVDKISFMGNGKFYYGDKILDLL"
     gene            complement(1847..2425)
                     /locus_tag="SB815_000757"
     CDS             complement(1847..2425)
                     /locus_tag="SB815_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906511.1"
                     /translation="MGLKDNLKAVKNELNTEEQFIENFIKGERFIRKYKFYISAVVII
                     LVAWFAGNFIISKINDYKTKEANEIYANLIQDPSNKNLLEQLKNKNTNLYAIFLLKEN
                     INDFNNTTLQNELKQIYNNAQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKLLEQNK
                     IEEANVLLSQIKENSSLNQIAKNLKHYQGITQ"
     gene            2569..2853
                     /gene="gatC"
                     /locus_tag="SB815_000758"
     CDS             2569..2853
                     /gene="gatC"
                     /locus_tag="SB815_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEG0906512.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            2921..3484
                     /locus_tag="SB815_000759"
     CDS             2921..3484
                     /locus_tag="SB815_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEG0906513.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIACLLAGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHASEKLQDIVSDLNNTQKGE"
     gene            3486..3959
                     /locus_tag="SB815_000760"
     CDS             3486..3959
                     /locus_tag="SB815_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEG0906514.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            3960..5465
                     /gene="lysS"
                     /locus_tag="SB815_000761"
     CDS             3960..5465
                     /gene="lysS"
                     /locus_tag="SB815_000761"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEG0906515.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYTIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNVEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLIVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMINFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKADGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            5462..6706
                     /locus_tag="SB815_000762"
     CDS             5462..6706
                     /locus_tag="SB815_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEG0906516.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDVNNEKLQ
                     ENIKQELKKLASNFIIYERAMF"
     gene            6703..7248
                     /locus_tag="SB815_000763"
     CDS             6703..7248
                     /locus_tag="SB815_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HEG0906517.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            7262..8098
                     /locus_tag="SB815_000764"
     CDS             7262..8098
                     /locus_tag="SB815_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEG0906518.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSANTTPQASTPKQEVTQTAKSKEE
                     AKKQTAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGSKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            8095..8883
                     /locus_tag="SB815_000765"
     CDS             8095..8883
                     /locus_tag="SB815_000765"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEG0906519.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(8958..9857)
                     /locus_tag="SB815_000766"
     CDS             complement(8958..9857)
                     /locus_tag="SB815_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0906520.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALVPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNVQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENAPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            9947..10762
                     /locus_tag="SB815_000767"
     CDS             9947..10762
                     /locus_tag="SB815_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEG0906521.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            10832..11614
                     /locus_tag="SB815_000768"
     CDS             10832..11614
                     /locus_tag="SB815_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HEG0906522.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            11598..13589
                     /locus_tag="SB815_000769"
     CDS             11598..13589
                     /locus_tag="SB815_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HEG0906523.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            13582..14307
                     /locus_tag="SB815_000770"
     CDS             13582..14307
                     /locus_tag="SB815_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HEG0906524.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            14335..>14661
                     /locus_tag="SB815_000771"
     CDS             14335..>14661
                     /locus_tag="SB815_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0906525.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKSKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSMQNAQICILNLFKSGFISKQDLLKALKILEKISK
                     NTEIFDF"
BASE COUNT         5048 a         1794 c         2707 g         5112 t
ORIGIN      
        1 attaaaagtt tatcataaat tgcgtgatcg aaataatttg ctaaaaattg cccatctcca
       61 ccagtgaaat aaagcttttt attttgagcg gcatctttta tcagtaggta aattccttta
      121 aaaacaccat aacttaaagc atccatggtt ttttgtggga atgcatcaag actaacttga
      181 gtgttaaatt cactttttaa tcgtggtgaa atatggctat aaattttttt ataatttgca
      241 atacctggca agataaaacc accaagatgt atagaattag aaataatatc aattgtaata
      301 gcactacctg catctacaac aactccatct tcaatagtat aacaagctgc tatgcgatcg
      361 attcctaatc cttgataaat tgtatcaaat aaaaaataag gttcaagatt gataaaattt
      421 ttttgatttt ttaaatgttc tttgagatgt tcattgacat tgatataaaa aattttttgt
      481 tcatttttaa attctaaaaa ctgatctata ttaagagtaa aatatttgtt atcatctagg
      541 aaattagcat ttgaattccc aatatcacag agcaacatag atattaaatc ctttcatttc
      601 tagatgattt tttgctttag agcaaagaga agccatacta aaaaaatatt tgttatttat
      661 gttaatttgc tgtgctagat tttctaaaaa taaggcatct ttcattaaaa attttgtttt
      721 tcctgtatac ataaaaagaa tgttattttg atctttagca caaatataac ttttttttct
      781 agtcaacata cttaagtcat agggctttaa atttaatttt aaagccttta ttgtttgttc
      841 taaaattttt atcatagcaa atctaaaatt ttatctccgt agtaaaattt accatttccc
      901 atgaaagaaa ttttatcaac agcttctgaa agtttaaata cttgtgcatt atctaaattc
      961 agattcattt tgataagata gcctgttttt tcaaaaatat ataaataatt attgtatata
     1021 ttgcttttta caaaaatagc aaattcaaat tttttttccg caatttttct taagttataa
     1081 tcagttttaa taatagtgcc atctttttct agtataaaaa taccatcatc gctaagtgca
     1141 acatctttta tgtcagcgtc aagataaaga gttctagcag ggcttacaac aatgattttt
     1201 ttagctgttg ctgctataag tttatctccg attacactta gatggattac attgttgaaa
     1261 aaattttctg ctgaaataac cacatcttta atgatttgaa gattgtttct tgaaagaatt
     1321 aaaattttac catctagtgt tggataaacg atgatattgt ctaaaaatat aggattagcg
     1381 gtacgactgt cttgggctgg agctgaggtt agggtttgac tgaatttaat acccaaagaa
     1441 cgatttgcaa gaactatagt attgtttgca agtacaaggg ctaaatcatc tccattagaa
     1501 gctactccta caacactagc gtcaaattga aaattataaa tttcattata agaattgtca
     1561 aaaattttta aatttccatt attatctgca gtaaaatatt ccccatcttg ataagctaga
     1621 agcatataat ttttaggaag tttaaacttg tctatggaga tattattttt taagatagtt
     1681 gtattattgc taagttttgc agaaactaga ttccaatcaa cgattttact ttttaaattg
     1741 ctattatgac ttaaatctcc atcggtttgt tttggttcaa aatattgtct tttggtgcca
     1801 caagcacata gaaatattaa acaaaatagt gttaaaaata tttttttcat tgtgtaatgc
     1861 cttgataatg tttgaggttt ttagctattt gatttaaact tgaattttct tttatctgag
     1921 aaagtaaaac attagcttct tcgattttat tttgctctaa aagtttgtaa gcttctaata
     1981 atttatcata attttttaaa aatatcgatt tatcccctaa agataatgca ataatatttt
     2041 taagtaaagt gtttgtttga gcattattat aaatttgttt tagttcattt tggagagttg
     2101 tattattaaa atcattaata ttttctttta gtaaaaagat agcgtaaaga ttggtatttt
     2161 tatttttaag ttgttctaaa agatttttat tgctaggatc ttgtattaga ttggcataaa
     2221 tttcatttgc ttcttttgtt ttataatcgt ttatttttga gattataaaa tttccagcaa
     2281 accaagcaac taaaattatc acaacagcag atatataaaa tttatacttg cgtataaatc
     2341 tctctccttt gataaaattt tctataaatt gttcttctgt gttaagttca tttttaacag
     2401 cttttaaatt atcttttagt cccaaaattt atccttgaaa aaatattttt atttttgtat
     2461 agaaaaatta tagtattgta tcatataaat tgcaaaatat cctaaacaat ttaaagcttt
     2521 ttatgatata attttcaaaa ttttaacttt tttattaagg tttaagaaat gcaaatagat
     2581 gagaaattat taagcaagct tgaaaaatta agtgctttac aaataacaaa aaacagaaat
     2641 gaaaccattg cacagttaag tgaaattgtg aattttgttg aaaaattaaa cgaacttgat
     2701 ctagattccc aagagattac tgtgagtact ataaaaggtg gagctccttt gaggattgat
     2761 gagataagaa atagcaatgt tattgatgag gttttggatt gtgctccaaa aaaacaagaa
     2821 catttttttg ttgttcctaa aatcatagaa tgattaactt agcatttagt gcttatttgt
     2881 agaataaatt taaaacaaaa aaaatcagag agtgattgaa atgaattttt attggtttga
     2941 tgcttttatt ttaggattta ccttgctttt agggcttaag ggtattatca atggtttgat
     3001 aaaagaaatt tttgggcttt tgggtattat tggtggtgtt tttattgctt caaaatatgc
     3061 aactcaagca gctgaattta tacaaagtac tttttataag atagaaaatc aaagcttagc
     3121 tggatttgct ggatttttgg ccatattaat tattttttgg atagcttgtt tgttggcagg
     3181 taattttctt tctaagttga ttaaattaag tggcctaggt tttttagatc gtattggtgg
     3241 ctttatattt ggcggggcaa aaatcttttt aatttttgca attttagttt tttgtgtagc
     3301 aagaatcgat tttttaaatg ataaattaga taattttgct aaaaatagct atactttgaa
     3361 tttgcttaaa gaaactggat cttttattat gaatcaacct ttaacagaaa atagtctaga
     3421 tcatgctagt gaaaagttgc aagatattgt aagtgattta aacaatactc aaaaagggga
     3481 gtgatatgct gatagaaaat gtggaatatg atgttttact tgagagattt aaaaaaatat
     3541 taagacaagg cggacttaaa tatactaagc aaagagaagt gcttttaaaa actctttatc
     3601 acagtgatac tcattacaca cccgaaagtt tatatatgga aatcaaacaa gctgaacctg
     3661 atttaaatgt aggaattgca actgtttatc gtactttaaa tttgcttgaa gaagcagaaa
     3721 tggtaacttc catttctttt ggttcagcag gtaaaaaata cgagcttgcc aataaacctc
     3781 accatgatca tatgatatgt aaaaattgcg gaaaaattat agaatttgaa aatcctatta
     3841 tagaaagaca gcaagccttg attgcaaaag aacatggttt taaacttaca gggcatttga
     3901 tgcagcttta tggtgtttgt ggtgattgta ataatcaaaa agcaaaggta aaaatataaa
     3961 tgtttgataa tattttagag cagcaaagaa tagaaaaagc taaggaatta aaaaatttag
     4021 ggatcaatcc ttatcctcat tttttagaaa aagaaatgtc tttaaagact tttaaggata
     4081 aattttctta tattttagag caagttgaaa aaagagatga aagtgtcaat gctgttgttg
     4141 caggacgttt gaaacttttg cgtatagctg ggaaatcgat ttttgcaaac attgaagatg
     4201 aggatacaaa tttacaaatt tattttagta aagatagcgt aggcgaagag ctttatacga
     4261 ttttaaaaaa gaatttagag gtgggtgata ttgttttggt taaaggtttt ccttttgtaa
     4321 ctaaaacagg tgagtttagt ttacatgcaa gtgaagtaaa actcgctaca aaagctattg
     4381 ttcctttacc tgaaaaatat catggattaa cagatattga gcaaagatat cgtaaacgtt
     4441 atgttgatat gataatgaat gtcgaagtta gaaaagattt tttagtgcgt tctaaagtgg
     4501 tgagtttaat ccgtcatttt tttgaaaata aaggcttttt agaagtagaa actcctatga
     4561 tgcatccgat tgcaggtgga gcaaacgcta agccttttgt aacttttcat aattctttag
     4621 gcgtagaaag atttttaaga attgctccag aactttatct taaaagactt atagtaggtg
     4681 gttttgaggc ggtttttgaa atcaatcgtt gttttagaaa cgaaggtatg gatttaactc
     4741 ataatcccga atttacaact atagaatttt attgggccta tcataattat aaagatttaa
     4801 tggatttaac cgaagaactt tttgctttac ttttggataa acttaattta ggaaaaacaa
     4861 tagaatttga tggaaaaatg ataaattttt ctaaaccttt tgaaagaata acctataaag
     4921 acgcactttg taagtatggt ggtttagata gggatttaat cgaagataag gaaaaaattc
     4981 ttactaaatt aaaagcagat ggttttgaag cgaatgaaaa gcttgaactt ggacatttgc
     5041 aagctgaact ttttgacaat tatgtggaag aaaaattgat caatcctact tttgtgattg
     5101 attttcctat ttccataagt cctttatcaa gacgtagcga tgaggattct cagattgctg
     5161 agagatttga gttgtttatt tgcggaagag aattggcaaa tggttttaat gagcttaatg
     5221 atcctcttga tcaatatgag agatttttaa aacaaattga agctaaaaat gcaggcgatg
     5281 aagaggcttg tgaaatggat gaagattttg taaatgcttt gggttatgga atgcctccaa
     5341 cggcagggca gggcataggt atagatagac ttgttatgct tttgacaaat aaaaaatcca
     5401 ttcgtgatgt gatattgttt cctgcaatgc gtccattaaa atcagaacta aaggagaaag
     5461 aatgagttta gaaatgtttg ataaagaaat ttttgattta acaaacaaag agttagagcg
     5521 tcaatgtgaa ggtcttgaaa tgatagcgag tgaaaatttc actttacctg aagtaatgga
     5581 agttatggga agtatcttga caaacaaata cgcagaaggt tatccgggta aaagatatta
     5641 tggtggttgt gaatttgttg atgagattga aactctagct attgaaagat gtaaaaaact
     5701 ttttaattgt aaatttgcta atgttcagcc taattcaggt tctcaagcta atcaaggtgt
     5761 ttatgcggct ttgattaatc caggtgataa aattttagga atggatttaa gtcatggcgg
     5821 acatttaact catggtgcaa aagtaagttc ttcgggcaaa atgtatgaaa gctgttttta
     5881 cggcgtagaa cttgatggaa gaattgatta tgaaaaagta agagaaattg ctaaaaaaga
     5941 aaaaccaaaa cttatagttt gtggagctag tgcttatgca agagtgattg attttgctaa
     6001 atttagagaa attgctgatg aaataggtgc ctatcttttt gctgatatag cacatattgc
     6061 aggtcttgtt gtggcaggtg agcatccaag tccttttcca tacgctcatg tagtaagctc
     6121 aactacacat aaaactttgc gtggcccaag aggtggtatt attatgacaa atgatgaaga
     6181 gcttgctaaa aaaattaatt ctgccatttt tccaggtatt caaggtggtc ctttgatgca
     6241 tgtaattgct gcaaaagcag taggatttaa atttaatctt agcgatgagt ggaaagttta
     6301 tgcaaaacaa gtaagaacta atgctcaagt tttagctaat gttttaatgg atagaaaatt
     6361 taaacttgtt agcgatggaa cggataatca ccttgtttta atgagttttt tagatcgtga
     6421 atttagtgga aaagatgcag atttagctct tggaaatgca ggtattactg caaataaaaa
     6481 taccgttcca ggagagatta gaagtccttt tatcacaagt ggattaagac ttggaactcc
     6541 agcccttact gccagaggtt ttaaagaaaa agaaatggaa attgtgtcaa attatattgc
     6601 agatatttta gatgatgtta ataatgaaaa attacaagag aatattaaac aagaattaaa
     6661 aaaacttgca agtaatttta ttatttatga aagggctatg ttttgatttc accaatggat
     6721 atgtcgctaa ttaaaataat tggcgatcat tattatataa gacgcgataa aattgtaaat
     6781 aaaattacac atagaggtcg cttatttttt gataaatttg aaagagttga tgctccttta
     6841 aatttaaatg tcatgagaga acacgctgct aaaaaaattg ttgtcgctca tgatttaata
     6901 acaaaagata ataaagtaga aaatattgtc tttgattata atggttttaa tgctgaaaga
     6961 ttttatcacc gtgcacaact tattttaaga gaagaaggtt ttataaattt cacagcctat
     7021 aagactaaaa ctccaggaca tttacatctt tatattcaca aaggacacac ggcgttaaac
     7081 gaaggttatt ctttagcgtc taaactttca atgatgtttg caagtaaaat gccagtagaa
     7141 tggaaggtgt ttcctagcat ggatgtacct agggaattta atattttaat attgccttat
     7201 gaggtttatc aaaaagaacg aggaagttct tggtctaagc atatgtaaga aaggacaaat
     7261 tatggaaaat caaaaaaatg aatttgatga tattatttta gaaaaaagta ataaaagtga
     7321 aaaagtaaaa aaaattcttt tacgagttat tgctttagtt attttgtttt tagctatcat
     7381 gatagttatg aagcttatta atggtagtgg tgatgaaaat acgcaaaatc aaagtgtatt
     7441 gccaagtgaa cctatagcaa ctcaagacaa taacaatgat acttcttttg aaagtatgcc
     7501 aattacagat aatacttcag cagaagatca atttgaggca ttaagaaaac aatttcaaga
     7561 tgaacaaaat acaactcaaa atacaacaac ctctagttca aataacaatg atactacaaa
     7621 ttttgctatg cctgatcaag aagttccagc agaaccaaca gcaactactt cagcaaatac
     7681 cactccacaa gcaagtactc ctaaacaaga agtaacacaa actgcaaaat ctaaagaaga
     7741 agcaaaaaaa caaacagctg taaaaaaaga aaaagaaagt gcaaaacaaa cccctaaaaa
     7801 agaacaaaat gcaaatgatt tatttaaaaa tgttgatgct aaacctgtac atccaagtgg
     7861 tttagcatcg ggtatttatg tgcaaatttt ctcagtaagt aatttggatc aaaaatcaaa
     7921 agaacttgct tctgtaaagc aaaaaggtta tgattataaa ctttataaaa ctacagttgg
     7981 aagtaaagaa attaccaagg ttttaatagg accatttgaa aaggcagata ttgcagcaga
     8041 acttgctaaa atccgtaagg atattgcaaa agatgctttt tcttttactt taaaatgaaa
     8101 tttttagcag ttataggcga tcctatttct cactctaaat cgcctagaat gcataataat
     8161 gctattaaag ccttagggct tgatagcatt tatacacgct atcatttaag aaatgctaac
     8221 tgtttaagag aagatttttt taaattagga cttagtggag ctaatattac tttgcctttt
     8281 aaggaaaaag ctttagatat tgctgatgtg aaggatgatt ttgctagaaa tattggctct
     8341 gcaaatactt tatgcttaaa agaagataaa atttacgctt ataatactga tgctttaggt
     8401 tttttagaag ctattaagga ttttgataat ataaaaaaag ctttgatttt gggtgctgga
     8461 ggtacagctt tggcgcttgc ttatgcatta aaacaaaaag gcgtagaagt gtatatagct
     8521 aatcgtagta aagaaagatt taaagatttt ttagcttatc caacttatct ttataaaaac
     8581 ttgcaagatt ttgactttga tttggttata aattcaactt ctgctggatt aaaagatgaa
     8641 aatttacctt gtgataggga gcttttagat agaattttac ctaaagctaa atttgctttt
     8701 gaggtaattt atggcagaga aacacctttt tatagattgt gtaaagagta tcatttaaaa
     8761 attaaagatg gacttgatat gcttttatgg caaggagttt ttgcttttga actttttttt
     8821 gaaatacaag ataaaagaga gatgataaaa aatgcaatgc aacaggcatt gattttaaag
     8881 tagaatgata gttatttttc ttgtataaga aaatcttatt ttttgtgtga gaaagtttaa
     8941 ttttcccaca agttttatca ttcaaatatt tctaccccat cttgattttt actttgatta
     9001 ttttgatttg ttgaagatgg atttgtagga atattttgtg taggcgcgtt ttcaattgta
     9061 ttattttgat tagaatttgt ttgaggtaag ctttcttcaa aggtagcatc gccatcaaaa
     9121 ctattaaaac cactgtttgt attaggtata gttttgccta tgtctgttgc ttttggtaga
     9181 ttgttataaa gtgtatttaa tgtattttta taaaaagcta aaaaactttt atcaatttca
     9241 aaagcaggtt gctctaaacc tttattgagt tgagttggta cggtagagat agtagtttta
     9301 aacatattaa ccccatcatc atttttaata ggatagttaa gcgcaactaa agaatctagt
     9361 ttagtgctac ttgaaagatt ggttgaattt tgtggattgt gtgcatctat aaaatctatt
     9421 ttacctttaa aatttatacc taaattggat tttacataat ctccactcat aaaattgctt
     9481 gttttttgta catttttttc ttccgtataa atactgattg aacttttaag agtgtagtct
     9541 ggattagtag taactatttt atagcctttt agttgagcga tggttttgat ctgctcttct
     9601 aaattttgtt ttaaaagatc aatttctttt tctatgcgaa ttttaagcac tgaattttca
     9661 aaataatcag aataattgtt attttgttct atattaatag gcacaagagc aatgcttact
     9721 ccagaatcaa taggttcaac ctttgttgga acttggggtt taaaatttgg catagaaaca
     9781 ttgacaaaat tactacttgt acccccacaa gctgctaaaa ttaacatact actagcaagt
     9841 aaaatatatt ttttcatttt ttacctttat ttaatgtgtt tgtgttaatt atagcaagtt
     9901 aaagtttttt tgttatattt ttataaaaga aaattaggaa agatatatgg aattttggca
     9961 gcatatttat tcaaatttta atgttatagc ttttagcatc tttggtttaa aggtgcattg
    10021 gtatggcatt atgtatgtta tagctttgct tttggctttg cttttggcta aattttttgt
    10081 aagaaaattt caactagaca ttaatgaaaa acatttggat agttatttta tatgggttga
    10141 aataggggtt attttaggtg caagacttgg atatattttg atttatgatg caaatactat
    10201 gtattatatt actcatcctt ggcaaatttt taatccttat attaatggtg aatttgtagg
    10261 tattcgaggt atgagttatc atggagcaat tataggattt ttgatagcta ctttattgtt
    10321 ttgtaaaaaa tataaaacaa atccttggat ttttcttgat ttggttgctt taagtgttcc
    10381 attggcttat gtttttggtc gtataggaaa ttttttaaat caagagcttt ttggtcgcat
    10441 tacaaatgtg ccttggggaa tttatgttga tggagtattg cgccatccat cgcaacttta
    10501 tgaagcattt ttagaaggta ttgttgtttt tattatagtt tatttagcaa gatttaagca
    10561 aagctttcaa ggggaattga ttcttgtgta tgctggtgct tattcattgg caagatttat
    10621 atgtgaattt tatcgcgagc ctgattttgg tataggtttt gttttatggg gtatgagtat
    10681 ggggcaaatt ttaagtttta taatgtttat aacagctttg ttagtttata tttgtataaa
    10741 gtttaaaaaa gtaaatattt aatctatctt aaagactttt gtaatataat gaaatggatt
    10801 ttttttaatt tctttttaca aaggagtaaa gatgcgtgag cttatcgaag gttatttggg
    10861 taagagcatt gagggcaaaa aaagtaaaat gcctgcgaaa ttagacttta tccaaagtgc
    10921 ttcagggctt tttttaggtc tttttatgtg ggtgcatatg ctttttgttt ctacaatttt
    10981 agtcagtgag gattttttta attctgtagt gcatttttta gaattaaaat ttgtttacga
    11041 taatcctgtt atgagttatc ttacttcatt tttagccgcc tgtgttttag tggttttttt
    11101 cgttcatgct ttacttgcaa tgagaaaatt tcctattaat taccgtcagt atcaaatact
    11161 aagaacacac agtaaaaaaa tgaatcacag cgatacttcg ttatggtggg ttcaagcttt
    11221 tacaggtttt attatgtttt tcttaggttc tgctcatctt atttttattg taaccaatgc
    11281 agataaaatc agcggcgata tgtcaggaga tagggttgta agtcatttta tgtggctttt
    11341 ttatgctgtt cttttagtct gtgttgaact tcatggaagt atagggcttt atagactttg
    11401 tgttaaatgg ggttggtttg aaggaaaaaa tgtaaaagaa agtcgcaaaa agcttaaaac
    11461 tgctaaatgg ataatcagta ttttcttcct agttttaggt gtgttaagtc ttgcagcatt
    11521 tataaaaata ggttatgaaa actaccaaaa tcaaacccaa actactgcga tgataaaaaa
    11581 ctacaatgga gcaaattatg aatatacaat atagtgatgc tttagtaata ggcggaggat
    11641 tagcaggtct tagagcggct attgaagtag caaagagtgg ccaaagtgta acacttttaa
    11701 gtatttgtcc agtgaagcgt tctcactctg cagcggtgca aggaggtatg caggcaagtt
    11761 tagcaaatgg ggcaaaaggt gagggtgata atgaagatct tcactttgca gatacagtaa
    11821 aaggaagtga ttggggctgt gatcaagaag tagcaagaat gtttgctcaa actgcgccaa
    11881 aagcagtgcg tgagcttgcg gcttggggtg tgccttggac tagagttact aaaggtccaa
    11941 gaactgttgt aatcaatgca caaaaaactg tgattgaaga aaaagaagaa gcgcacgggc
    12001 ttattaatgc tagagatttt ggtggaacta aaaaatggag aacttgctat atcgcagatg
    12061 caacagggca ttgtatgctt tatggtgtag caaatgaagc tattaaacat caagtaaaaa
    12121 ttattgatag aatggaagca gtaagaatta tccatgatgg taaaaaatgc ttaggtgtga
    12181 tcgctagaga tttaactaat ggacaactca ttgcttatat tgcaagagga accatgatag
    12241 caacaggggg ctatggtaga atttataaac aaactacaaa tgcggtaatt tgtgaaggaa
    12301 caggtgcagc catcgctctt gaaacagggc tttgcagact ttcaaatatg gaagcagtgc
    12361 aatttcatcc aactcctatt gtgccaagcg gtattttgct tactgagggc tgtcgtggtg
    12421 atggtggaat tttacgcgat gtggatggat atcgttttat gcctgattat gaaccagaga
    12481 aaaaagaact tgcaagccgt gatgtggtaa gtcgtagaat gatggaacat attcgtaaag
    12541 gcaaaggtgt aaaaagccct tatggggatc atttatggct tgatatttct atacttggaa
    12601 gagctcatgt ggaaaaaaat ctccgcgatg tacaagatat ttgtaaaact tttaatggta
    12661 ttgatccagc agatgagggt ccaaaaggtt gggcgccagt tcttccaatg cagcattatt
    12721 ctatgggtgg aattagaact aaaccaacgg gtgaaagtca atggttaaac ggactttttg
    12781 cttgtggaga agcagcttgc tgggatatgc acggatttaa tcgtttaggt gggaattcat
    12841 gtgctgaaac tgttgtagca ggtatgatag tgggagatta ttttgcagat tattgtaaaa
    12901 ataatggtga agtaattgac acaaatgtag taaaagactt cttaactaaa gagtatcaat
    12961 atttaaaatc tttagtagat aaagaaggta aacataatgt ttttgaaatc aaaaacagaa
    13021 tgaaagaaat catgtgggat aaggtggcca tctttagaac aggtgaaggt ttgaaagaag
    13081 cagtagatga acttgaaaaa ctttataaag attctcaaga cgttaaagta cattgtaaag
    13141 aacttgattg tgcaaatcca gagcttgaag aagcgtatag agtgccaaga atgttaaaaa
    13201 tagcactttg cgtagcttat ggagcgcttt taagaacaga aagtcgtggg gcgcattata
    13261 gggaagatta tccaaaaaga gatgatttaa attggatgaa aagaaccaat actttttggg
    13321 tagaaggcga aaccttacca cgcatagaat acgaagagct tgatattatg aaaatggaaa
    13381 ttccaccagc attccgtgga tacggtgcta aaggaaatat tatagaaaat cctttaagtg
    13441 aaaaacgcca agctgaagtg gatgctatcc gtgaaaaaat ggaagctgaa ggcaaaggtc
    13501 gttatgaaat tcaaaacgcc ttaatgcctt atgaattgca agctaaatat aaagcaccaa
    13561 accaaagaat aggagttgat tatgagtaga aaattgacaa taaaggcatt taaatacaat
    13621 cctttaagca aaatttctaa accacatttt gtgacttatg agcttgaaga aactcctttt
    13681 atgacggttt ttgtatgttt gactttgatc cgtgaaaaaa tggatgcaga tctgagtttt
    13741 gactttgttt gtcgtgcagg gatttgcgga tcttgtgcaa tgatgattaa tggagtgcca
    13801 aaacttgctt gtaaaacttt gactaaagat tatcctgatg gagtgataga gcttatgcct
    13861 atgcctgcat ttaggcatat taaagattta agcgtgaata caggcgagtg gtttgaagac
    13921 atgtgtaagc gtgttgaaag ctgggtgcat aatgaaaaag aaactgatat ttctaaactt
    13981 gaagaacgca ttgagccaga agttgcggat gaaacttttg aacttgatcg ttgtatagag
    14041 tgtggaattt gtgtagcttc ttgtgcaact aaacttatgc gcccaaattt catagctgct
    14101 acagggcttt taagaacagc tagatattta caagatccgc atgaccatag aagtgtggaa
    14161 gatttttatg aattagtagg cgatgatgat ggtgtttttg gttgtatgtc attgcttgct
    14221 tgtgaagata attgccctaa agaattacct ttacaaagta aaatcgctta tatgagaaga
    14281 caacttgtcg ctcaaagaaa taaataaatc tttccccttt ttaaggggaa gattgtgaaa
    14341 gaattattcc aaaaaatttg gcaaaatgaa ctccaatttt taaattttga tgctaaattt
    14401 caagataaaa gcaaacttga tacagccgag tgtgcgatta ttttaagtgt caataaagac
    14461 aattatgaaa gatattttct cttaaaagaa tttcaagagc tttgcaaaaa aattgattta
    14521 agagtggata tttttagtat gcaaaatgct caaatttgta ttttaaatct ttttaaatca
    14581 ggttttattt caaagcaaga tttacttaag gctctaaaaa ttttagaaaa aatttcgaaa
    14641 aataccgaaa tatttgattt t
//
LOCUS       DARBAR010000034        14191 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.034, whole genome shotgun sequence.
ACCESSION   DARBAR010000034 DARBAR010000000
VERSION     DARBAR010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14191)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14191)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14191
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.034"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            18..614
                     /locus_tag="SB815_000772"
     CDS             18..614
                     /locus_tag="SB815_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEG0906526.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFVEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(646..1743)
                     /locus_tag="SB815_000773"
     CDS             complement(646..1743)
                     /locus_tag="SB815_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HEG0906527.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(1753..1968)
                     /locus_tag="SB815_000774"
     CDS             complement(1753..1968)
                     /locus_tag="SB815_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HEG0906528.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            complement(2153..2347)
                     /locus_tag="SB815_000775"
     CDS             complement(2153..2347)
                     /locus_tag="SB815_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEG0906529.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            2487..3134
                     /gene="rpe"
                     /locus_tag="SB815_000776"
     CDS             2487..3134
                     /gene="rpe"
                     /locus_tag="SB815_000776"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEG0906530.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFVDLFISLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLIHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            3131..3892
                     /locus_tag="SB815_000777"
     CDS             3131..3892
                     /locus_tag="SB815_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEG0906531.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPKNITELTGITYEMVENASSLAKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTARIKQK"
     regulatory      3914..4018
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            4075..5367
                     /gene="thiC"
                     /locus_tag="SB815_000778"
     CDS             4075..5367
                     /gene="thiC"
                     /locus_tag="SB815_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEG0906532.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFGIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQINAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGIQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVTDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     gene            complement(5359..5877)
                     /locus_tag="SB815_000779"
     CDS             complement(5359..5877)
                     /locus_tag="SB815_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906533.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKSKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFNIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(5867..6394)
                     /locus_tag="SB815_000780"
     CDS             complement(5867..6394)
                     /locus_tag="SB815_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906534.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSILFILLVYFTYTIKIA
                     LINSSIDDEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            complement(6391..7350)
                     /locus_tag="SB815_000781"
     CDS             complement(6391..7350)
                     /locus_tag="SB815_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HEG0906535.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYIKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILLNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNMQKEKQPDDQILLYGFKQGYLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNDDTEVTLDNFNEALNNKF
                     DLLDQENNLETLDNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFINGIL
                     LYSESDININAIDFLESETFLEIKTKQINTLDLMIELMRKEVK"
     gene            complement(7352..7981)
                     /locus_tag="SB815_000782"
     CDS             complement(7352..7981)
                     /locus_tag="SB815_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEG0906536.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWKFKSW
                     DKMILPKPFSKITYSLSEPLDILSLDKEKAKEFLMKQFDKISLADQFKE"
     gene            complement(7965..9266)
                     /gene="miaB"
                     /locus_tag="SB815_000783"
     CDS             complement(7965..9266)
                     /gene="miaB"
                     /locus_tag="SB815_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEG0906537.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEEIASRRLSTLQNRHSEILDKIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            complement(9263..9505)
                     /locus_tag="SB815_000784"
     CDS             complement(9263..9505)
                     /locus_tag="SB815_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906538.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            9633..10721
                     /gene="nusA"
                     /locus_tag="SB815_000785"
     CDS             9633..10721
                     /gene="nusA"
                     /locus_tag="SB815_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEG0906539.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(10737..11924)
                     /locus_tag="SB815_000786"
     CDS             complement(10737..11924)
                     /locus_tag="SB815_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0906540.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLVRLSIPDFHQKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGLGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            11998..13044
                     /locus_tag="SB815_000787"
     CDS             11998..13044
                     /locus_tag="SB815_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HEG0906541.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLKRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALVRLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            13044..>14191
                     /locus_tag="SB815_000788"
     CDS             13044..>14191
                     /locus_tag="SB815_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG0906542.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEGKTLQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELGK
                     NIKDEILVRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLMEKVKLET"
BASE COUNT         4908 a         1918 c         2357 g         5008 t
ORIGIN      
        1 aaataaaagg ttttattatg gcgtttaaaa atttaaaaga actttctttt gaaaaatcaa
       61 attatattaa gcctaagaga tttgcttatg aaagtaatgg taggctttgc acttgggatt
      121 ttatagaatc taaagatagt gtttcagtgc ttttgtatca taaagaatta gaaagtttta
      181 tttttgtacg ccaatttcgt ataccacttt ggtatcatca aatgcatgat aaagattatg
      241 taaaagatga tgatatgggc tatactatag agctttgttc tgggcttgtg gataaaaaat
      301 tatctttaga ggaaatagca aaagaagaat gtatagaaga actaggatat gctcctaaaa
      361 atttagaaaa aataggagat ttttatacag ggtttggttc aggtgtaagc aagcaaagct
      421 tttatttcgt agaagttgat gaaaaagata aaatttcttc tggaggtgga gttgatgatg
      481 aagagattga agctgtttat gttaaggtgc aggattttga aaaaaaatgt aaaaatatga
      541 taagaacgcc tttgcttgat tttgcttata tgtggttttt aaaggaaaag tggggaaaat
      601 taaagattat ttaggttaaa ccttaaaaag gttcaaccta ggattttaat gatctgactc
      661 atcaagcatt tctttaaata cattgaaaag atcaagcgat gcattttcag caacttcgca
      721 tttattaatt atgctgtgtt gagtaatatc tttgctaata tcttctgtat ttgctattgt
      781 tatagcatta ttcatatttt catgaacttt ttcatgtggc tcgttaattt ttaagaagct
      841 tttattttgc ccaaatcttt cttttcctgt gctagcaagc cattttccta agcgacaaga
      901 tgtatgatcg gctaattgct ttcctgattt ggaaaaaatt tctttataac catttaattt
      961 aaaagctata tgatctagtt ttgctaaaga tacgaaagct tctgaagcga taccaactgc
     1021 atttgaatta gtagaatgcg cttcatttac taagtgagta aatttttcgg aaaaactcat
     1081 aatatgagca ttagaatcta tagaaatttt ttcaacttgc tcactttgag tatacatttc
     1141 atttgcattt tgctttagaa ggttgatgtt catttcaact tctgtggttg ctttttgtgt
     1201 tttttcagct agttttctta cttcatcggc aacaacagca aaaccacgcc catgttcacc
     1261 tgcgcgtgca gcttctatgg cagcgttaag agctaaaaga ttggtttgat cggaaacatc
     1321 tttaattaga ttaattacat tagtaatttc atctacactt ctatgcaatg ttcctgcaac
     1381 atctcttgtt ttattggctg attctgtaat atttcccaaa gaggcattga tagaattagc
     1441 aatatggtta agttcatcca tttcagcaag agaagtttta gaatagctag agataacttc
     1501 tgccttattt acattttcta acatatcgcc ttgaataata gtaatatttt ttaaaacccc
     1561 agttaataaa acatttaaaa gatctgtttt aagtttagac tctaaagccg cttgttctaa
     1621 tgatgtaatt ttatttttta attctaaatt ttccgattga aatttttcaa ttttatgtgt
     1681 aagattttta ttttcttctt caagtttttg aagatcagaa tggtttattt tacttccaaa
     1741 cattgttttg ccttattttt tataatttgc tagatattgg ctaagttcat cttttacatg
     1801 aagcttttct ttttttaaag ttgaaatttc catgctgcta agagaagttc taccttcttc
     1861 tgcatcttta atcatgtcat caagttcatt atgacgatca aatagtttat caaaatgagc
     1921 atctttacct tttagctctg acattaattc tctatattca tgtagcataa actctccttg
     1981 tattagtgaa atttaaaatt catttaataa ggtattttac actattaaaa gatattttta
     2041 gcttaaaaaa taataaaatt aataataatt tttaaatgtg tgttatataa gtgatttgtt
     2101 aaagtttatt tttaaattgg aaattttaaa attgaggaat aaatcctcaa aattatttag
     2161 aattttgttt ttttagagtt cttagagtag aagctgcaat tctcattttt ctcgtggtgc
     2221 catcttctaa agttacacga actgttctga gattaggtaa aaagcgtctt tttgttttat
     2281 tgttagcatg gctgacatta ttacccacca ttggaccctt gcctgtgatt tgacatactc
     2341 ttgccatttt tttgtcctta tgaaaatttt taaatggaga ttttatcaaa attaagctta
     2401 aaatattcca taatttatag tttttttaat atataagtcg ataaaatatt atttatcaca
     2461 tttatatata gtttaaggtt ttgatcatgt atgtagctcc aagtttattg tctgcaaatt
     2521 ttttgaaatt agaagaagaa gttaaagcta ttgaagctgc aggtgcggat cttttacaca
     2581 ttgatgtaat ggatggacac tttgttccaa atttgacttt cggaccttgc gtgatcgaaa
     2641 aaatttcaac tattagtaag ttgccattag atgtgcattt aatggttaaa gatgtaagta
     2701 aatttgtaga tctttttatc tctttaaaac cgaaatttat ctcttttcat atggaaagcg
     2761 aagttcatcc tataaggctt tgtgaatata taagaagtca aggaatccat cctgctattg
     2821 ttttaaatcc acatactcct attgattcta ttaaacacat gctagaattt gtagatatgg
     2881 tgcttttaat gagtgttaat cctggatttg gtgggcaaaa atttttacct ttgatacatg
     2941 aaaaaatcaa agaattgcgc caaatgattg ataaaaaaaa tgctaaagtt tttatagagg
     3001 ttgatggtgg tgttaatggt ttaaatgcta gtgatttaga agaatctgga gctgatattt
     3061 tggtggctgg aagttatatt ttttcttcca atgattataa aactgcaatt tcatctttaa
     3121 agcttgaatt ttgagtttac agcaaattga tcagattatt tctatattaa ataagcaaag
     3181 caagccttat gattgggtga tgcaagagtt tgccaaagtt gaagaattaa aaaattttga
     3241 tttagattta gaaacttttg agcttttggg gttaggttta actttaaata aagataatat
     3301 ttttactctt aaaacacgca caacaaaaat taaagatgaa attttttgca tagtggatat
     3361 agaaagtact ggtggggtga gcaaggggga aattttagaa attggagcgg taaaaattca
     3421 aaattctaaa gaaattggac gctttcaaag ttttgttaaa gtaaaagaaa ttccaaaaaa
     3481 tataactgaa cttacgggta ttacttatga gatggtggaa aatgcttcaa gtttagcaaa
     3541 ggttttaagt gattttaggc tttttttaaa agacagtatt tttgtagcgc ataatgtgcg
     3601 ttttgattat agttttattt ctaaggcttt aaatgagtgt ggttttggca ttttgcttaa
     3661 tcgtcgtatt tgcactatag aatttgcaca atgttgtata gaaagtccaa aatataaact
     3721 agaggttttg aaagaatttc ttggcgtgga aaatatgcat catagagcct tagatgatgc
     3781 tttggcagct gctgaaattt ttaaatattg ccttggaaaa cttccttatc atataaaaac
     3841 tacagaagaa cttataaatt ttacaaaaac tgcacgtata aagcaaaaat aaatatttaa
     3901 agtgtataat taaaacataa atgacgggag cttgtgtaac aggctgagag taagctaaaa
     3961 gcttagaccg aaccggatct ggataatacc agcgtcggga agatttataa atttcaatac
     4021 tttaaaaatt tatactcacc cttcatttat ccaaattttt taaaggataa atttatgaaa
     4081 actcaaatga attatgccaa agaaggtatt tttactaaag aaatgcagat tgttgcgcaa
     4141 aaagaaaatt taagtaaaga ttttttgctt gaaaatattg cttgcggtaa aattattatc
     4201 cctgcaaata ttaatcataa aagtcttgat ccaaatggta taggttttgg actgcgtact
     4261 aaggttaatg taaatttagg agtttcaaat gattgcgttg attatagcga ggaaatgaaa
     4321 aaagtagagc ttgctcataa atttggcata gaagcgatta tggacttaag caattatggc
     4381 aaaacaagtc gttttagaga cgagcttgtt aatgtttcaa aagctatgat aggaacagtt
     4441 cctgtatatg atgcggtagg atttttagaa aaagatttaa agcaaattaa tgccaaagac
     4501 tttttagatg ttgtatatca tcatgctaaa agtggggttg attttatgac aattcatgca
     4561 ggtattaatt ctcgcgcagc gcatattttt aaacaaagta aaagacttac aaatatagtt
     4621 tcaagaggag gctctgtact ttatgcttgg atgatgatga aagatgctga aaatcctttt
     4681 tttgagtatt atgatgattt gcttgacatt tgtttaaaat atgatgtaac tttatctttg
     4741 ggcgatgctt tgcgtcctgg ctctactcac gatgcaagtg atggggcaca aatttcagaa
     4801 cttatagaat tatcactcct tactcaaagg gcttgggatg ttgggattca agtaatgata
     4861 gaaggtccag ggcatatggc tattaatgaa atagaggcaa atatgcaatt agaaaagcgt
     4921 ttatgcaaag gagcgccttt ttatgtctta ggacctttgg taacagatat tggcgcaggg
     4981 tatgatcata ttagtggtgc tattggagga gctgtggctg cagctagcgg tgctgatatg
     5041 ctgtgttatg taacacctgc tgaacactta agacttccaa atttagaaga tgttagagag
     5101 ggtatagttg cgactaaaat tgcagctcat gcgggagata tagctaaact tccaaaagaa
     5161 agagcaagag atgatgagat gagtaaggct agacaagaga tagattggga gaaaatgttt
     5221 aaacttgcta ttgatggaga aaaggctaaa aaaatgttta atgagcgtcg ccctgatgat
     5281 ttaaactcat gttccatgtg tggaaaaatg tgtgcaatga atactatgaa tcaaatttta
     5341 aaaggcgaag atgtgagttt agcttgaata aactttgaga gtaagatcta tagagatacc
     5401 ttgctctcct gctttaagat taagtggata atcaagcttg attaaattat tatagttttt
     5461 tagagcatca ataaaatcat aaagtcttct aggattattc attgtcgctt taatggctaa
     5521 gcggtttttt agatattttt cttgtttttc gggcttagtt tcttgaattt ttacattttg
     5581 aaaatatttt tgtaaaaaaa tattaaaatt tcctatatta aaattttgct caaattgctc
     5641 taaacttttg ttgttttcgc ttcttagagt tgatatttta tcttcgctaa agtcaaattt
     5701 tgatttagca gcttttaaga tagcaagttg tgaattttct ctaagatttg cttgtttgta
     5761 attttttaat gtcggtaaaa gtaaaaataa gatcaaggct gtgcaaacgc ttataaaact
     5821 taacgcgcaa atgataagct ttaataaatc aatttcttct aggcttttat ctttcatctg
     5881 caactcctgg aatttgtttg ctaatactaa caaaacgata ccacccatta tctaagcgat
     5941 aataggttgt gtagctttga tcaaagatgc tttttaaagg ggtttctaaa agtagagtaa
     6001 acatttctct tgtaggagtg actccgataa gttttaagga atattcgtct tgttcaacac
     6061 tttcaagagt aatattatca gtttttacaa taatatcaaa tagatttctt aagctttctt
     6121 taacaatttg attttgagtg ttaaaatttt tcgctatttg gctttgatca aataaaattt
     6181 cataaagcat ttcattttgc ttagtttgat tttgaagcac tataacttgt tgtttttcat
     6241 catcgataga gctattgatt aatgcaattt ttattgtata tgtaaaatat actagtaaga
     6301 taaataatat actaaaacca aaaagtccta gccaaatttt atcaaagagt gtgaaaatag
     6361 gtttttttct tggctgtata aagctataag tcatttaacc tcctttcgca tcaattctat
     6421 cataagatct aaggtgttga tttgtttcgt ttttatctct aaaaaagttt cactttctaa
     6481 aaaatcaata gcatttatgt taatatctga ttcgctatat aataaaatac cattgataaa
     6541 taccccagca tatttatcat cattataaaa tttttcaatg ctcgtaataa tataacggca
     6601 aagttccata tcattgctaa attgatttaa ttcatcaaga ttaaaattat cattattatc
     6661 caaagtttca agattatttt cttgatcaag tagatcaaat ttattattta aggcttcatt
     6721 gaagttatct aaggtaactt cagtatcatc gttgttgttt tcaatttctt gattatcttc
     6781 tgatggaagt tcaagctcta aacctaattc ttgctcaaat attttaaaat caccgtataa
     6841 aatagtattg cctttagcaa caataattgc caaaagatat ccttgcttaa atccataaag
     6901 taaaatttga tcatcaggct gtttttcttt ttgcatattg tagtaaagaa gagcaaaagg
     6961 ggaatataaa aaatctaaac ctctatattc ttcaaaaagc tcgctataat attctacatg
     7021 ttcggtagcc gtataaacaa gggcattatt aagcaaaata tgctgtaagc tgatttttcc
     7081 tatattaaag tgctcacaat cttgaatatt tgtactaggt attaatcctt gttctttggc
     7141 gtctaaaaat aaagcagtgt ggtaaaataa gaaatgcttg cttaaatttt ttatgtactc
     7201 taataaattt tcacttttat caaaagtttt ttcattgcta ctgattagtt tatttcctct
     7261 ataaatagaa gcttttacaa tatttttttt atcttctaaa ataatactaa taaaaagttg
     7321 tggaaatatt tttttaagta aaaataacat ttcattcctt aaattgatca gctaagctaa
     7381 ttttatcaaa ttgtttcatt agaaattctt tagctttttc tttatctaaa gataaaatat
     7441 ccaaaggttc acttagacta taagtaatct tactaaaagg ttttggcaag atcatcttat
     7501 cccaactttt aaatttccaa aaacgatttg cttcatagtt taaaattctt atctttagtt
     7561 cttttttttg agccaaaatg atagaaccat ctgaaatact atgataaggc cctcgtggac
     7621 catcgggcgt gataactata tcgtcatttt gttctaaaac tttaaatgca gctctaagtg
     7681 cactgctagc accccttgaa gtgcttcctc ttacagtatc aagaccgaaa agcttgatga
     7741 tttttgcaat ttgctctcca tctttatggt gggagatcat gacataggct tttttatttt
     7801 tttgtctata atgtctaaac gcaaaaggca tgagtgctaa ttttccatgc caaaaaagta
     7861 tcacaccagc tttacggtca actttttcac ctttatagtg ctttttacag cttaaaaaaa
     7921 taagccattg taagatgaaa attatatatg ttaagcaatg gattttaaac gatttcccca
     7981 tataaaacca tacgctttgc attagttatt tttacttctt taaattgccc taaaagttct
     8041 tcgctacctt caacttgaac taaaaagtta ttatctgttc ttccagcaat gctattgcct
     8101 gctcttaatt cttcaaataa aactttaaaa gttttatttt cttgtttttt tacaatttta
     8161 tctaaaattt cactatgacg attttgtaag gtgctaagtc ttcttgaagc tatttcttca
     8221 tcgatttgat taggcatggt tgcggctttt gttaaagggc gtttggagta tttaaaagaa
     8281 aaaatttgtt caaaacgcac tttttccaaa acatctacag tctcttcaaa atctttttca
     8341 ctttcccctg gaaaagctac aataatgtct gtagaaatgc taacatttgg acaaagttct
     8401 ctaagtttta aagctctatt taaataccat tctttagtat agccacgctt catagctttt
     8461 aaaatttcac ttgagccgct ttgtaaaggc atatgcatgg atttgcaaac ttttggatta
     8521 ttggcaaaaa cttctaaaaa tttatcatcc atgtgcaaag gatgtggact tgtaaagcga
     8581 atgcgttcca aaccttctat agtgctaagt tcttctaaaa gatctgaaaa gtccattttt
     8641 ttatgttcgt ttctaaatct tttgccatag ttattgacat tttgtcctag caagaaaatc
     8701 tctttagcgc ctttttcaat agctttttga gcttctttgt agatgatgtt aaaaggtatg
     8761 gaaatttcat ctcctctagt atgtggcact atacaataag tgcagtgttt atcacaacct
     8821 atggagatat taatatagga tttataaata ctatttctaa aatctgcaaa agcaaattca
     8881 ctttcatcat agtctatatc cacgcccata aattttggag tttttatagc ttgagtgatt
     8941 ttggaaatat ttcttgcccc tagaacaaaa tccacataag gagcacgttt gaaaatttca
     9001 tttcccaaat gtgatgcagt gcatccacaa actcctattt tagcaccttc ttttttaact
     9061 ttttcaaagc cacccacttc tgagaaaagt ttatgcacag gtttttcacg cactgaacag
     9121 gtattaataa gaataagatc tgcttctttg atatcttctg ttagtgcgta attttctttt
     9181 tgtgttaatt ctgcgatcat atgctcagaa tctctgacat tcatcgcaca acctaaagtt
     9241 tggataaaaa gttttttagc actcaaagaa tatgtacctc atacataaaa tcattatcat
     9301 caagtccgta ttttacggtt ctatgataaa tgcttactcc ttttttttca aaatgattta
     9361 caagggcaat gagttgtttg tgtgtattat ctttatcaaa ataaaaaaac ttttgtcctt
     9421 ctttttctat agcctcttcg attttttcta ggctaatatt tttaggtttt tcattaatca
     9481 aagttcttgc caattttaat tccatagcta aatccttaag aattttcatt ttaatctata
     9541 attttagcaa attttacttt taattaaact tattaaggat ataattttta tctacattat
     9601 ttaaatttcc cacaaaaaag gttttataaa atatggaaaa gatagcagat attatcgaat
     9661 ctattgctaa tgaaaaaaat ttaaacttag agaatgtaag agaaaaggta gctaccgctt
     9721 taatcaatac tgcaaaaaga atttatggac aagaatatga gttttttgtg gatcctaaaa
     9781 atttaaatct ttatcaaaaa attaccatag tagcagataa tgacgagaga ttgcaaaata
     9841 aaagtgagag ttttatcgcg ttaagtaagg caaaatcaga agctccagat gttgaaatag
     9901 gagatgaatt aacctatgaa tgttctttgg aaaatttagg aagaactgcg gtaaatacct
     9961 tgcataaaga acttgaatat catatacaaa aattattaga acaaactatt tttgaaaagt
    10021 ataaaaacaa agtagggcaa atggtttttg gtacagttgt tagagtggat aatgaagaaa
    10081 atacttttat tgaaatagat gaattaagag cttttttacc gagaaaaaat cgcattaaag
    10141 gggaaaagtt taaaataggt gatgtggtaa aagctgtgat acgccgtgtt tatacagata
    10201 agggtattaa aatcgagctt agtcgtacaa gtcctaaatt tttagaatgt ttacttgaag
    10261 ctgaggttcc agaaatcaaa gatggttatg tcaatattat aggatgtgct agaattccag
    10321 gtgaaagagc aaaaatcatt cttcaggcca atggaacaaa tatcgatcct gtaggagcta
    10381 cagtaggtgt taaaggtgta agaattaatg cggtaagcaa agagcttcat aatgaaaata
    10441 ttgattgtat agaatttaca aatgagagtg aaattttaat ttctcgtgcc ttggctcctg
    10501 ctattgtaaa ttctgtaaaa attgaagata aaaaagctat tgtaagttta aatagcgaac
    10561 aaaaaagcaa agctatagga aaaaatggta ttaatattcg ccttgcttct atgttaagtg
    10621 gttatgaaat agagctcaat gaattaagct catcgcagct aaataatgcc atcagcaatg
    10681 aagaagcaat gaaaaatctt caagatttgt ttaaaattta aaatatttgt gaattttcac
    10741 aaatattttt tataaaacca cttccaataa aatgccgcaa agataaaaat catacccaat
    10801 aagcctgtaa ttagttctaa actcaagcct atttcaaata aaaagcccat aagcattgaa
    10861 ataatagcgc taaaactaag ataaatcata tctgtataag cgatcactct accatgatat
    10921 tctttgtcgg catttttttg tatcatagtg taggtgtaag cccaaagcgc tgaggtaaaa
    10981 aaacctgcac cgattaaacc taaaaaagaa atataaaaat taaattgagt taaagcccaa
    11041 agtataatac ccaagccttg accaagatac atgtaaaata aatttttatc attaataaat
    11101 ttgcttaaaa ccataggtcc tatagctaaa gaacaagcac gtactgcatt taaaaaccct
    11161 attactaaag cagcagataa aacttcttta tattgatgtt gcgctaaaag cgtaaccaag
    11221 gtttcataag cagttaaacc tataaaagcg tgaagcaaga taagatgaaa aattatctta
    11281 ttgtttaaaa catagaaaaa tccttctttt atcatggtaa aaaagcgact ttgtgttttt
    11341 tgatgaaaat caggaatgct taatcttact aaaaaagaaa tgcctatgag tataagtata
    11401 cagtcaaata gaaaagcggt tttaactcct agaaaataaa taaaaattcc cgcacttgcc
    11461 atacctgctg tataagaaat cgcccaaatg acactgtgca tttcattagc gagtttaagt
    11521 tcttgaggag ttaaaatttt ggccaataaa ctcatttcag cttgaaaata aatcgaagca
    11581 acacaaagtc ttatgaaaat taaaataaat aaaagccaaa gcatactaag acttgtgaca
    11641 aaaataagac aaaaaataga aattaattct atgctaatca tactgagtaa aagtttttta
    11701 ggtttatttt tctctactat gacgccatta ataggagcaa gtaaaactcc aggtaaaaaa
    11761 gcaagcatag cacttgtagc tgttgcccaa gtaggagcat taagttcgac taaaagggta
    11821 aaaactcccg tttgagaaaa ccatgctcca aaatatacta taaactgaac cgaagctaat
    11881 attctgatat ttttattatt ttttaatagt tcaatgtaat tcataagcga aactatagca
    11941 taatttatat tttaaatgct ataattattt taattatgta aaaaacaagg aaaaattttg
    12001 aaaagactgg ataaaaaaga agctttagat ttattacacc atgcaagttt aacagagctt
    12061 ggagaaatgg cttataaaag aaaattagaa cttcatcctg aaaaaatcac cacttttgtt
    12121 gtggatagaa atattaatta taccaatgtt tgttgtattg attgttcttt ttgcgctttt
    12181 tatcgccatc ataaagaaga tgatgcttat attttaagct ttgaagagat aggcaaaaag
    12241 atagaagagc ttgaagctat cgggggaaca caaattcttt ttcaaggcgg ggtgcatcca
    12301 aaattaaaaa tagaatggta tgaagaatta gtttcttgga taaaagaaca ttatccaaat
    12361 atcactgtgc atggtttttc agcagttgag atcgcttata ttgcaaaagc atctaaaatt
    12421 tcaatcactg aagtgttaaa aagattgcaa gctaaaggtt tattttctat accaggagca
    12481 ggtgctgagg tgctaagcga tagggtgcgt gatattatcg caccaaataa atgtgataca
    12541 gctacttggt tagaagtaca tcgccaagct cataaaattg gtatgaaaag tacagctact
    12601 atgatgtttg gaacggttga aaatgatgaa gaaatcatcg atcattttga gcatttgaga
    12661 aaattacaag atgaaacagg gggatttaga gcttttattt tatggagctt tcaaagtgat
    12721 aatactgctt taatccaaaa acatccagag attatgaaac aaagttctaa caaatattta
    12781 agacttttag ctttagtaag actttattta gataatttta aaaatttaca aagttcttgg
    12841 gtaactcaag gctcacttat aggccagctt gctttaaaat ttggggccaa tgatttaggc
    12901 tcaactatga tggaagaaaa tgtagtaagt gctgcaggag caagttatag aatgaatcaa
    12961 gatgagatga taaggctgat tagaagttta ggcgaaaatc cagctaaacg caataccgct
    13021 tatgaaattt tagaaaggtt ttaatgcagt atttagagag taggggtatt aaaatccctt
    13081 ttatttttga aaaaaattct gattttccta ttgttgtttt aaagcttgtt tttagaaatt
    13141 gtgctagaag ttatgatgaa atagcaggct tagctaagat gttttcacgt attttaaatg
    13201 aaggcgtgga tgataaattt tttaaggatt tagaatttag agcgataaat ttagaggcaa
    13261 gtagtggttt tgaaagtttg gaaatcaatc tttcttgctt gaaagaaaat tttgattttg
    13321 ctttaaagag tttagaaaaa ttgcttttaa aaccaagaat agaaggaaaa actttgcaaa
    13381 aattaaaaat caatgcctta ggtgagctcg cgagtaaaaa tagtgatttt gattatttag
    13441 caaaaaattt actcaatgct caaattttta aatgtaaaga atttcaaagt ccaaatgatg
    13501 gagatgaaaa aagtatagaa actttgtctt taaaagattt gcaaaatttt tataaaaatt
    13561 ttatccatct tagtgatttg gttgtgattt taggaggaga tttagaagaa aaacaagcca
    13621 aggaagatct tttaaaactc ttatcaaaac ttcaaatagg caaaaaaaat actccaaaaa
    13681 aatatgagtt aggcaaaaac atcaaagatg aaattttggt acgcccagaa agtgaacaag
    13741 cttatattta ttttgctacg cctttttttg ctgattttaa agataaggat ttatatcttg
    13801 caaaaattgc cttatttgtg ctagggcaag gaggatttgg ttcaaggatt atggaagaaa
    13861 ttcgtgttaa aagaggtctt gcatactcag cttatgctat gcttgatatg aatatgtctt
    13921 tttctagagt ttttggatat ttacaaacta aaaatgaaag cgctaaagaa gctaaaaaaa
    13981 tcgtaaaaga gctttttgaa gattttataa aaaatggcat gactcaaaat gaacttgatc
    14041 aagctaaaaa ttttctcata ggatcaactc ctttgcgtta tgaaagctta agcaagcgtt
    14101 tatctatgtc ttttaacgaa ttttatcaag gtttaaattt gggatattat aaagaagagt
    14161 taaaacttat ggaaaaggtt aaacttgaaa c
//
LOCUS       DARBAR010000035        14028 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.035, whole genome shotgun sequence.
ACCESSION   DARBAR010000035 DARBAR010000000
VERSION     DARBAR010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14028)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14028)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14028
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.035"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            84..755
                     /gene="hsrA"
                     /locus_tag="SB815_000789"
     CDS             84..755
                     /gene="hsrA"
                     /locus_tag="SB815_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HEG0906543.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            868..1113
                     /locus_tag="SB815_000790"
     CDS             868..1113
                     /locus_tag="SB815_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HEG0906544.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            1113..2573
                     /locus_tag="SB815_000791"
     CDS             1113..2573
                     /locus_tag="SB815_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG0906545.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSANEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(2570..3367)
                     /locus_tag="SB815_000792"
     CDS             complement(2570..3367)
                     /locus_tag="SB815_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906546.1"
                     /translation="MRLLVLFFLILPLYSVELISYNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESAPTTTANNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVVFDHANKRYTMIIGNSNV
                     LLESIEIPEEQTIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(3368..3676)
                     /gene="fliN"
                     /locus_tag="SB815_000793"
     CDS             complement(3368..3676)
                     /gene="fliN"
                     /locus_tag="SB815_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEG0906547.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(3676..4098)
                     /locus_tag="SB815_000794"
     CDS             complement(3676..4098)
                     /locus_tag="SB815_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HEG0906548.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
     gene            complement(4169..4918)
                     /locus_tag="SB815_000795"
     CDS             complement(4169..4918)
                     /locus_tag="SB815_000795"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEG0906549.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIFKK"
     gene            complement(4911..6089)
                     /gene="trpB"
                     /locus_tag="SB815_000796"
     CDS             complement(4911..6089)
                     /gene="trpB"
                     /locus_tag="SB815_000796"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEG0906550.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            complement(6086..6685)
                     /locus_tag="SB815_000797"
     CDS             complement(6086..6685)
                     /locus_tag="SB815_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEG0906551.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFILAGGIGLDN
                     VHKAVKTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            complement(6672..8273)
                     /gene="trpD"
                     /locus_tag="SB815_000798"
     CDS             complement(6672..8273)
                     /gene="trpD"
                     /locus_tag="SB815_000798"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEG0906552.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVVALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEIRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            complement(8270..9520)
                     /locus_tag="SB815_000799"
     CDS             complement(8270..9520)
                     /locus_tag="SB815_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEG0906553.1"
                     /translation="MFVKNVNFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELS
                     FSEFKAKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKA
                     YLIYEKNSKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKA
                     KEYLLSGDIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPSKYGVVLGSSPE
                     FLLKIKKREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKF
                     GTQTRVENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALE
                     ITSELEDCDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQK
                     EYAEICAKRKALLVAFENLKKENQ"
     gene            complement(9685..9810)
                     /locus_tag="SB815_000800"
     CDS             complement(9685..9810)
                     /locus_tag="SB815_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906554.1"
                     /translation="MFQNIIKYKDFIIFILNLKQNLYLLIKINLDFKNFHKSLNF"
     gene            9933..10718
                     /locus_tag="SB815_000801"
     CDS             9933..10718
                     /locus_tag="SB815_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG0906555.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
     gene            10791..13616
                     /gene="uvrA"
                     /locus_tag="SB815_000802"
     CDS             10791..13616
                     /gene="uvrA"
                     /locus_tag="SB815_000802"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEG0906556.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHRCGQKISSMSVSDIVSEILKFPKGAKIIIYSPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLNEVQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKSLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCGGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            13621..>14028
                     /locus_tag="SB815_000803"
     CDS             13621..>14028
                     /locus_tag="SB815_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG0906557.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSR"
BASE COUNT         4955 a         2307 c         1933 g         4833 t
ORIGIN      
        1 attaattttt ttttaaagat atctaaacat ttacttaagc tatgatataa ttctttaaat
       61 ttttcttaat aaggatagaa caaatgagaa ttttagttat agaagatgag attagcctaa
      121 ataaaacaat tatagacaat cttaatgaat ttggttatca aaccgattct tctgaaaatt
      181 ttaaagatgg agaatacttt atcggcatta gacattatga tttagtttta gcaaactgga
      241 ctttacctga tggagatgga gcagaacttg ttaataccat taaacataaa tctccaagaa
      301 cttcagttat gattatgtct tcaaaaacag acaaagaaac agaaatcaaa gctttgaaag
      361 ctggagctga tgattttgtt aaaaaacctt tagattttga tattctactc gcaagaattg
      421 aagcaagact aagacttggc ggaaccaatg ttattaaaat tgaagactta gttattgatc
      481 cagatgagga aaaaattact tataaaggtc aagatataga acttaaagga aaaccttttg
      541 aagttttaac gcacttagca agacattcgg atcaaattgt atccaaagaa caacttttag
      601 atgccatctg ggaagaacct gagctagtaa ctccaaatgt tatcgaagta gctatcaatc
      661 aaattcgtca aaaaatggat aaaccattaa atatatctac catagaaaca gttcgtcgta
      721 gaggataccg tttctgcttc cctaaaaaat cttaacaatt ttgcaccttc ggtgcaaaaa
      781 atttatcttt atttctattt ttatatttta tttaagtttg gttattgtat aaactaaaat
      841 tattttttaa atttttgaaa ggttatgatg tctcttttaa ttacaaaaga ctgcgtatgt
      901 tgtgatgctt gcagagaaga atgtcctgat gaagctattt atgaaaatag tccaatttat
      961 gtaatagacc ctgatctttg ttcagagtgc gttaatgatt tttcagagcc tgcctgtatt
     1021 gttgcttgcc catatgaatg tatcattcct gatcctgata atgtagaaac tatagaagaa
     1081 ttaaaactca aacatagaga tagagaattt taatggcaaa aaaaacagcc gttgttgatc
     1141 ttggctcaaa ctccattaga atggtgattt ttgaaaaaac ttctagatat ggtttttata
     1201 caacttgcga atacaaacgc aaagtaagac ttggagaaaa tgcttataat aatggcaaaa
     1261 ttctccaaga agaagccatg caaagagccg aagatgcctt agcttttttc aaacaatgcg
     1321 ctttaaagca taagtgcaaa aaaatattta tagtaggcac atcagcctta agagatgccc
     1381 caaattcaaa aaatttcatt aaaagaatca aagataatct gtctttaaat atacgctgta
     1441 tagatggaaa aagcgaaagt tacttaggtg gtcttgcagc tctaaattta ttaagtcctt
     1501 ttaaggatgg aaccacttta gacataggtg gtggttctag tgaattgtgt ttaataaaaa
     1561 ataatagaat tatttcttgc atatctcttg atattggcac tgttaggcta aaagaattgt
     1621 tctatgatac tggaaaaatg gattctttag aagaatttat aaaaccaatt ttagaacaaa
     1681 ttcctaaaga attttgcaat caaaacctta ttgcaatagg tggaagctta agagcaatat
     1741 ctaattccat catgcaaaaa aattcctatc cactgaaaaa tttacatgat tttcgctata
     1801 tgctagatga agaaaaagga catattttaa aaatttttaa ttcaaactta gactctttaa
     1861 tcaattttgg cataaaaaag gatcgttttg ataccattaa agagggtata tttatttttt
     1921 taaagattgc ggaaaaaata aaagccaaac aagttatcac gagtggggtt ggaatcagag
     1981 aaggagttta tttgcaagat ttacttcgtc ctaaaatcac atttccacca aatttcaatc
     2041 ctagtttaaa atgtttgcaa gataaatttt tacaatcaaa acaaaaaaat aaaactccac
     2101 attttgctct gcaaattttt acaaccctta aaaatcttca taaacttaac gataactata
     2161 agcatacttt actaaatgct gctaaattat gccatattgg agaatattta aatttctatt
     2221 ttgctaatga acattctgct cattttgtac taggtggatt aaattatgga ttttcacata
     2281 aagaaaaagc tttaattgct agcattatta agcttaatgg aaaaaaagtt aatccttata
     2341 atcttgaacc ctataagcaa cttttaccca atattcatac catttcatgg cttaatttta
     2401 ttttgtgctt agctaaaact ttaagcgcaa atgaagataa gattgatttt gcttttgcaa
     2461 acaatactct ttatatatat caagaaaaca aaattcttaa tttacccaaa gatgagctca
     2521 aaaaaattgc aaaaccagct accatagcat tagcaatcaa tcaaaaaatt taagattttt
     2581 tacctttttg acgctgctct ataagatttt gaattctttt tttattctct tcaaaaaaag
     2641 aatcaaaatt tttctctgtt ttttctgtat gttttattgt ttgttcctct ggaatttcaa
     2701 tactttctaa aagcacattg gaattaccta ttatcattgt ataacgttta ttagcgtgat
     2761 caaaaacaac aagttgatta tttttatcta aaaatctttg gaaaatcata gtaaaatctc
     2821 tagaaacatt gttattttta taaaccatag tctttttaaa ccaccaaagt actattaaca
     2881 aaataactaa aattagcatt actaagatat aatttgtata atcataccct tctaaacttg
     2941 tactttttgg tttaggcatt aattcttgag aattattcgc agttgttgta ggtgcagatt
     3001 cgatatttgc tttcccttgc tctatagctc gtatccttac tccaaattta tcattgatag
     3061 agctaagttc taaattaata ttttgtttgt tttgtagcat aatataggta ttattatttt
     3121 tagaactaat actaatttta tctacaagtt gagagttaag ttcttttaat tcatctttag
     3181 aatacgttaa atcactaaaa gttaaaagag ttaaattttt ttcttttttt tgagaaatct
     3241 tgccattata agcattatca aaagaaagca ttaaatctac tcgatcattt ctatcgtaga
     3301 tattataact aatcagctca acactatata aaggtaaaat taaaaaaaat aatactagta
     3361 atctcattta aatttctttt ttaaagtatt gaagcacagt cttagaatcc aaaatttcat
     3421 taattcttat agcgagattt ttttcataaa ccataacctc gcctttgcca aaaattcttt
     3481 tattgatata aagctcaacg ctttctccag caggcttttc aagatcaata accgaaccta
     3541 cttcaagttt taaaagctct gctacactca tatttgtagt tccgagctcg cttacaaaat
     3601 ctactgtaat atctaagata tcttcataag attgtaaaag cccatgatga atgttaaact
     3661 ctatatcatc gctcattatt tgcaatatcc tattctaaaa taacaatttt caaatttata
     3721 agttaaagct tcatctagaa ctatttcaga aaaatcaact tttcctaaat attcgggaat
     3781 tccaagttta tactcgtcat cacccttagc atcatttaac aaatttttag cataacctat
     3841 aatctgattg gcacattctt tagttaaatc gcaccagtca tcttctttaa atttttcatc
     3901 attaattaaa atttctgcaa ttttttttaa aaattctttt ggaaaaaata aataaaaatt
     3961 acattctcct tcgcttttgc ccatgatagg aatactcgct ccataaagtt caccgcttat
     4021 atcttgagct gcttcaatgc gaagtcttaa gatatgctcg caaaaatgag tgatggaata
     4081 ctcaagaatc tttaacatag ctaccacctt tataaaaaac ttaatttaaa attatagtaa
     4141 atataaaata aaaatatgtt ttaaaatttt attttttgaa aatttcttca atatctttca
     4201 ttattatatc caaatttcct tgtttaaaac actttactat gctagttccc acaatcactc
     4261 catcagcaac ttttctcatt ctttttacat cttgattatt ttgaatgcca aaacctacaa
     4321 aaataggcaa atttgtaaaa gatctgattt cttttacttt atcttgtaag attgcttctt
     4381 cgacactttt tgtacctgta atacctatac ttgctaataa ataaataaaa cctttagcat
     4441 gttttaccaa ctttttaacc ctttctttag gggttgtaac gcttacaagt gtgattaaag
     4501 ctatattata tctttcacac tctttaatca aatcatcact ttcttcaaaa ctcaattcag
     4561 gcacaatcaa agcacaaatc cctaaagatt ttgctttttt cacaaatttt tccaagccat
     4621 aagaaaaaat taaattataa taaaccataa aaaccaaagc ttttttagtt tttatcctag
     4681 ctaaaagctc aaaaacacta tgaatatcca cgccttgatc aagagctatt tttgccgcat
     4741 ctgcaataat ctcaccatcg gcaataggat cactataagc aacaccaagt tctaaaatat
     4801 caataggact ttgatccaat ctttgcaaaa aagcttcact tgtttgaaga tttggataac
     4861 ctaaaaccgt ataagccaca tttgcatttt ctttataaaa ttttctaaaa tcaaccataa
     4921 atcacccctt ttttataatc tctaatcatt tgcatatctt tatctcccct gcctgaaaga
     4981 tttactacta tcacgctttt cttttttaaa gttggacaaa gtttttctaa aaatgccaaa
     5041 gcatgcgaac tttcaatcgc tgcaataata ccttcttctt tacaaagtaa ttttaaagcc
     5101 tgcatacatt cttcatcact tatagcatga tattgcgctc ttttgctttc aaataaaaaa
     5161 gcatgcaaag gaccaattcc tggataatca agccctgcag aaacactatg tacaggcaag
     5221 atattgccta aatcatcttg taaaaccttg gttttcatac cgtgaataat gcctgttttt
     5281 cccttattta aagtcgctgc atgataaggc gtatcaatgc caagcccccc tgcttcaata
     5341 cctataagtt taacattttc atctttgata aaatcataaa aaatcccagc tgcattgctt
     5401 ccacccccaa cagctgcgat aatataatct acttttttat tgagtttttg aagttgcatt
     5461 ttgcattctt ttcctataat actttgaaaa tgcattacca ttttaggata aggataagga
     5521 cctaccgcac ttccaaccac ataaaaaata tttttaatat ctccaaccca agcttgaata
     5581 gccgcagtag tagcttcttt tagagtttta agcccacttt gtactgcatg aattttagca
     5641 cccaaaagct ccattttata aacatttaaa gcctgtcttt gcacatcggt tgcccccata
     5701 taaatttcac attcaagtcc taaaagtgct gctgcagtgg ctgttgcaag cccgtgttga
     5761 cctgctcctg tttctgctat gatttttttc tttcccattt tttttgctaa aagggcttga
     5821 gcgatggcat tattgatttt atgtgctccg gtatgattta aatcctcgcg ttttaaataa
     5881 atttcatgct gatatttttt gcttaaattt ctagcaaaat aaagtggagt aggacgccct
     5941 acataagttt ttaaaagctc gtttaattct tttttaaaga gtttatcttt agaaaatttc
     6001 aaaaaagcac cttctagctc atttaaagca aacattgcac tttcaggcaa aaactgccca
     6061 ccaaaatccc cataatacgc ttttttcatt ttttcaactc ctttaaaatt tgttttattt
     6121 tgttgatatc ttttaagcct ttttcatctt caagttttga attaagatct aaaattttag
     6181 ctcccgtttt tacagcctta tgaacattat ccaaacctat gcctccggct aatataaaat
     6241 ctttagtata agaacctaat aaagtccaat caaaacttat tccattaccg ccctttaaaa
     6301 ttcccttagc atcaaaaagt actaaattag caaaaatttc actttttaaa tctaaactat
     6361 tttccacact aatcacctgc caaacaaaaa cattttgcac ctttaaaatt tcaaattctt
     6421 ctttggtaat agtgcgataa atttgtatcc catcaagctt agcttcttta atacatctta
     6481 aaatttgttc caaattttca tctacaaaaa caccgacaac ttttttatct ttttcatgaa
     6541 aaattgcact taaatttctt gcttgttcta aactcactct tcttggactt ttagcaaaaa
     6601 taagtccaaa aaaatcaata tttaaaaaag ctaaatcttt ggcatttttt tcatctttaa
     6661 taccacaaat tttaagcttt agcataagct tgatactcct taaaatattc tataacctta
     6721 cctgaataaa tggcttctaa aatcatatct ttagccacta aaggcgaact tgctttattg
     6781 gctgtataaa gtgcaaacat agcatttaaa actaccaaat caaattttgc cccttgcatt
     6841 ctaccgctta aaatatcttt taaatcttta gcgttgtcat atgcactaga tcctatgatt
     6901 tcactatgaa aagctctttt aaaaccaaat tgttcaggac agatagaata ctctaaaatt
     6961 tctccttcac aaagctcata aattttactt tcatcgcaaa tactaagctc atccatacca
     7021 tcatttcctc ttaccactaa agcttttttg cgtcctaaat tttttaaaac ctctatcaaa
     7081 agcctatgca caggtgcgtg ataatttccc ataagttgat attttaactt taaattaggg
     7141 tgcaataaag gacctaaaac attaaaaacc gttcttactc caagtcttga tctgatctct
     7201 ttaagttctc ctactaaagg atgaaaaaat ggagcatgta aaaaactaag cccttgatta
     7261 tttagttgtt ttaaaactga ttctaaagtg tttggagtag ttatatttaa agcttctaac
     7321 acatctgtac ttccgctaga acttgaaatg gcacgatttc cgtgtttggc tacttttact
     7381 cctaaagctg ctaaaataaa agcactagtc gtagaaacat tgatactttt aaaaccatct
     7441 ccacctgttc cacaaatatc aatcatctca ctctcatcac taaaagtttg agaatatctt
     7501 aaaatttgtc ttacaaaagc acttaaagat ttttcattta aggacttttc agtgattaaa
     7561 atcaacaaag ccactacttg taaaatttca taatctttag acataataat cttacaaatt
     7621 tgctcaaaat catcgctttg taaaaaatga ttttcactca ttttttgcaa ataaaaactt
     7681 aaaggatttt cttgtttttg tggttttttt atatcttgtt ttaaaaaatt agaaaaaagt
     7741 tgcaagccat attcactaaa atagctttca ggatgaaatt gcacaccata ataaggtaaa
     7801 tttttatgtc ccaaagccat aatcacaccc ttttcatcaa gggctaaaat ttcaagctca
     7861 tcactaagct gtttaacctc taaagaatga taacgcatta cactaaaatt tgaaggcaaa
     7921 ttagaaaata attcattttc cctgcactgt tttatcaaag aattttttgc atgcataggc
     7981 tcttgcatct taaccactaa agaatcaaaa gctaaagcta aagcttgatg tcctaagcaa
     8041 atgcccaaaa cagggatatt aagccttgct ttaaaaattt caagacaaat cccactttga
     8101 cttggatgct ttggaccagg acttaaaata atatgagtag gatttaaatt tttaatttca
     8161 ctcagagaaa ttgcatcatt tcttcttact aaaatttcat cattgctgag ttgctctaac
     8221 atgcttttaa cattaaaaac aaaagaatca taattatcaa ttaaaagtat cattgatttt
     8281 ccttttttaa attttcaaaa gctaccaaaa gcgccttgcg tttagcacaa atttctgcat
     8341 attctttttg actctcactt tgcaaaacaa tacccgcccc acttgccaaa taagccttat
     8401 cttgagtaaa aaaagcgcaa cggattaaaa tcgctaaagt tatgtcttcg ttaaaattta
     8461 aaaatcctac cgcaccacca taaattccac gatcgcaatc ttcaagctcg ctagtgatct
     8521 ctaaagctct tattttagga gctccgctta aagttcccgc tggaaaaact gcttcaatca
     8581 catcaaaaat actcgcatct tctttcatat tggcatacac ttcactcact atgtgcatta
     8641 caaatttatt tttaataata gaaaaaagat tttccactct tgtttgagtg ccaaatttag
     8701 aagcatcatt tcttgctaaa tctacaagca tcttatgttc actaagttct ttttcatcgc
     8761 ttaaaagatc tttttctaaa gctaaaagat cacagttatt ttccaaattt ctagttccag
     8821 caataggggc taaataaatc tctctttttt taattttcaa taaaaactct ggagaagaac
     8881 ccaaaacaac accatattta cttggaaaat aaaacatata agcgcttgga tttaaagcac
     8941 ttaaactctc ataataatca aaagcattta cttgatgttt gatacaaagt tgcttactta
     9001 agaccacttg aaaaatatct ccacttaaaa gatattcttt ggctttttcg cacattttta
     9061 aaaaatcatt tttttcatct tctaaagaat ttaaaatttc aaaatcattt ttttgtttct
     9121 ttttcattgg ttcaatatca tcttttaaat attcaaaata ttttgaagca ccaaatttaa
     9181 aaaacatctt gctatttttc tcataaatca aataagcctt agcattggca aataaaaata
     9241 aaggaaaatc ataatttttc ttagaagaaa gtggaatttt ttcaaacaaa gatacaaaat
     9301 ttgcactaaa aactccaaaa aatccagcaa agtcgcaaat tttattcttg cttaaagctt
     9361 cataatattt tgccttaaac tcgctaaagg ataattcatt agcatctaaa taatcacaat
     9421 caatccctat aattacctta gtcaaatcct ctgcaaaata agaattttca aatttttcaa
     9481 ggatttgtct gtaataaaaa tttacatttt taacaaacat aataaacctt tttttaaaaa
     9541 ataaattaaa ataatattaa agaaaaaatt tagataaaaa gaagtttaga aacgccaaga
     9601 gcgaagagta tgtgtaagtt ttaaaatcaa agaattacta aaaaaaccat tttcactcat
     9661 cttttacctt tcttataaaa tatttcaaaa attaagactt ttatgaaaat ttttaaagtc
     9721 taaattaatt ttaatcaata aatataaatt ttgctttaaa tttaaaataa atattataaa
     9781 atctttatat tttataatat tttgaaacat ttttacgatg cttaaagtta ccaaaaaata
     9841 ttctattgtt ataaaaaaac taagataata cttagcttaa taagataaaa ttattccgta
     9901 tttgaaatat ttaatatttt ttaggaaaag ctatggaaat cacagattta ccttatctaa
     9961 tcataggaat catttcaggt attgcttctg gactttttgg cattggtgga ggtatgatta
    10021 tcgttccttc tatgttcgca cttggagcaa gtgctcacca tgctatcgga atttcagtat
    10081 tgcaaatgat ttttgcagca gtttttggct cttatattaa ttataagaaa aaaaatctaa
    10141 atcttaaaga tggtattatg ataggttttg gagggctcat aggagcaagc tttagcggaa
    10201 tgcttttaaa agctttaagt gatgtagctc ttactagcgt atttttggcg gtaagttgta
    10261 tattttttat caaatatgct tttggaatta aagaaaacat tgtgcaaaat caaagaagcg
    10321 tttgggtaaa gaatgtcatt ttatttattg ctggagcttt tactggtatt tttgctattt
    10381 ctttgggaat tggtggcgga cttttaattg ctccgatttt agcttatttt ttaggctatg
    10441 atagtaaaaa agttgtttcc ttatccttgt tttttgttat ttttgcttca gtctctggta
    10501 ttatatcttt ttcaaattct ggagttatag actctgaagt tattcataaa ggaatactag
    10561 taggtatagc ttctatggtt ggagttttta taggaattaa aatcatagaa aaaatgcata
    10621 tttcagctca tagaaaaatt ttactttgcg tatatgcctt atcaatactt ggaaccaccc
    10681 actctttgct taataagcta aattttataa atttttaact tggatttatc caagttcttt
    10741 taatattatt atgctaaaat cttaaattta tttaatgttt aggaaagact atgaacgata
    10801 ccataaaaat cattggcgca agagaaaata acctaaaaaa tatccacctt gaaattccca
    10861 aaaacaaact tattgttttt acaggactga gcggaagtgg aaaatcaacc cttgcttttg
    10921 gaactcttta tgctgaagga caacgccgtt atatagaaag tttaagtgct tacgccagac
    10981 aatttttaga taaggtaggc aaacctgatg tcgataaaat cgaaggttta actccagcca
    11041 ttgccataga tcaaaaaact acttctaaaa atccacgctc tactgtagga accatcactg
    11101 aaatttatga ttatctaaga cttttatacg caagagttgg cattcaacat tgtcatcgat
    11161 gtggacaaaa aatttcatct atgagtgtaa gtgatatagt cagtgaaatt ttaaaatttc
    11221 caaaaggtgc aaaaatcatc atctactccc cactcatacg agaaaaaaaa ggaacttatg
    11281 cagatttgct tgaaaattta cgcaacaaag gctatgtaag agctcaaatt gatggagttt
    11341 tggtaagact tgatgaagaa attgaactag ccaaaaccaa aaaacacacc attaaacttg
    11401 tcatagatag acttgaaatt caagaagatt tactttctcg tcttgcaagc gatatagaaa
    11461 aaggtttaca ggaaagcttt ggagaaatag aaatagaagt tttaaatcat gaggaaataa
    11521 accttaataa acactatcat tttagcgagc attcagcttg ttttgattgt aaaatttcct
    11581 ttgttccact tgagccttta agcttttctt ttaattctcc aaaaggagca tgtgaagctt
    11641 gcgatggact tggaattcgt tatactttag atatgaaaaa aatcatcgat gaaaatttaa
    11701 gtctcgaaaa cggtgctgtt aaaatcatgt atggttttaa taaaagttat tattataaat
    11761 tcctaatcgc cttttgcgaa caaaatgaaa ttcctatcaa aatacctttt atgcaattaa
    11821 acgaagtaca aaaacgtctt gtattgtatg gtaatgccaa aactatagaa tttctttgga
    11881 aaagaaatcg cctaaaacgc acttttgaag gcgtggttaa aatggcttat gaaatgctaa
    11941 aagatgaaaa agatttagcc gaatatatga gtgaaaaaat ttgtaaagac tgcggtgggc
    12001 atcgtttaaa acctgaaagt ttagccgtga aagtagcaaa aaaaagcttg ggtgaaattt
    12061 tagatatgag catagaagat agtacggcct tttttgcaga tgagaaaaat ttttcttatt
    12121 taagcgagca acaaaaactt atttctaaac ctatcctaaa agaaatcaac gaaagattgt
    12181 ttttcttgta tgatgtgggg ctaggttatc tttctttagg gcgcgatgca agaacgatta
    12241 gtgggggtga agcacaaaga atccgcatag cttcacaaat tggcagtggt ttaagcggag
    12301 tgatgtatgt cttagatgag cctagcatag gacttcatga aagagatact gcaaaactga
    12361 ttaaaacttt aagaaattta caacaaaagg gcaataccct aattgtcgta gagcatgata
    12421 aaatgaccat agaagaagca gattttattg tagatattgg tccaaaagca ggaaaatttg
    12481 ggggtgaggt tgtatttagt ggaacttata aagaactttt aaaaagcaaa agcgaaactg
    12541 cactttatat gaatggtaaa aaacaaattt cacaacttca aaacagaaca cagaaagaat
    12601 ggcttgagct taaaaatgta aatattaaca atatccaaga tttaagcgta aaatttcctt
    12661 tgcaaaattt agtcgctata acaggagttt caggttctgg aaaaagctct ttgatacttc
    12721 aaaccctact tccttttgca caagaggaat taaaccgtgc gaaaaaagtt aaaaaacttg
    12781 gcggagtaca aatagaagga cttgaaaaac ttgataaagt catttatctt gatcaaagcc
    12841 caattgggcg cacaccacgt tcaaatcctg ccacctatac aggtgctatg gatgaaatca
    12901 gaaatctttt tgccgccact aaagaagcca aaatgcgtgg ttataaagcc ggacgctttt
    12961 cttttaatgt caagggtgga agatgtgaga aatgtagcgg agatggagaa atcaaaatag
    13021 aaatgcattt tttacctgat gttatggtag tttgtgatac ttgcgggggc aaacgctaca
    13081 atgatgccac gctagaaatc aaatataaag gcaaaaatat cagtgaaatt ttaaatatga
    13141 gtgttttaga agcgagtgaa ttttttacag ccgttcctaa aatcaaacaa aaattagata
    13201 ctctagtaaa agtgggttta gattatctaa ctctaggaca aaatgccacc accttaagtg
    13261 gaggtgaagc acaaagaatc aaacttgcta aagaactaag ccgtagcgat acaggaaaaa
    13321 cgctttatat acttgatgaa cctacaacag gactgcattt tgaagatgtc aataaactca
    13381 tcttagtttt acaacatttg gttgatctta aaaattctgt ttttgtgata gaacataatt
    13441 tagatgtgat taaaaatgct gattatatca tcgatatggg gcctgaaggc ggagttaaag
    13501 gtggaaaagt tataagcaca ggaagcgtgg aaaaagtcgc taaagaacac aaaaaaaccc
    13561 gttcttacac aggatattat ctagacttag agcttaaaaa tacacaaaaa tcataatttt
    13621 atgtttgatt ttttatataa tgatattagc tatttggggc ttttcatggt gtgttttctt
    13681 tcaagcacac tattaccctt agcaagtgaa gcctttgttt taggctttat aaaacttgat
    13741 tttaatccga atttggtact tatcgtagcc actttgggta ataccttagg aagtttaagt
    13801 acttatgctt tagcgtattt tggaaaagaa aaaattttag aaaaatactt tagcaaatcc
    13861 ttgaaaaaat tagaaaattt caatgctaat tttgctaaat ttggaagtat atttgctttt
    13921 tttacttttt tacctttagt gggagatctt tttgccttgg gacttggttt tgcgaaatat
    13981 tcttttttaa aaactatatt ttttatctta cttggaaaat taagtcgt
//
LOCUS       DARBAR010000036        13928 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.036, whole genome shotgun sequence.
ACCESSION   DARBAR010000036 DARBAR010000000
VERSION     DARBAR010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13928)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13928)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13928
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.036"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..414)
                     /locus_tag="SB815_000804"
     CDS             complement(<1..414)
                     /locus_tag="SB815_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl phosphate synthase small subunit"
                     /protein_id="HEG0906558.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKE"
     gene            complement(414..965)
                     /locus_tag="SB815_000805"
     CDS             complement(414..965)
                     /locus_tag="SB815_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HEG0906559.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            complement(1058..1576)
                     /locus_tag="SB815_000806"
     CDS             complement(1058..1576)
                     /locus_tag="SB815_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HEG0906560.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEEQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            complement(1569..1997)
                     /locus_tag="SB815_000807"
     CDS             complement(1569..1997)
                     /locus_tag="SB815_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HEG0906561.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLLKSGSIAELRSNLSMAQVGREALARAKEKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            complement(1994..3244)
                     /locus_tag="SB815_000808"
     CDS             complement(1994..3244)
                     /locus_tag="SB815_000808"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEG0906562.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGTLTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            complement(3272..3369)
                     /locus_tag="SB815_000809"
     tRNA            complement(3272..3369)
                     /locus_tag="SB815_000809"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3333..3335),aa:Sec,seq:tca)
     gene            3509..4717
                     /gene="yedE"
                     /locus_tag="SB815_000810"
     CDS             3509..4717
                     /gene="yedE"
                     /locus_tag="SB815_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HEG0906563.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFIIV
                     GIANIIGTMILALSYNFLPKAFKEGIKINLLTEFGNLNGFFINLILFILMFVFVVFYK
                     KHFFKNQLKG"
     gene            4721..4948
                     /gene="yedF"
                     /locus_tag="SB815_000811"
     CDS             4721..4948
                     /gene="yedF"
                     /locus_tag="SB815_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG0906564.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDAKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(4964..6433)
                     /gene="putP"
                     /locus_tag="SB815_000812"
     CDS             complement(4964..6433)
                     /gene="putP"
                     /locus_tag="SB815_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HEG0906565.1"
                     /translation="MEVVQINTPIAVMFVVYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGIVSIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHIVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLVASVVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(6451..9939)
                     /locus_tag="SB815_000813"
     CDS             complement(6451..9939)
                     /locus_tag="SB815_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEG0906566.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYAYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYEGKKFSNESDTDFILAQNRVWAKEIKTKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVT
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGI
                     PKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLEDNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFINNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSMIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
     gene            complement(10070..11092)
                     /gene="selD"
                     /locus_tag="SB815_000814"
     CDS             complement(10070..11092)
                     /gene="selD"
                     /locus_tag="SB815_000814"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(11042..11044),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HEG0906567.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMIELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELTPDLNEEKLLLCDPQTSGGLLISISEKDSLECLKKLEDENIQAKIIAKVVNKQE
                     NDIIIS"
     gene            complement(11102..11674)
                     /gene="yedF"
                     /locus_tag="SB815_000815"
     CDS             complement(11102..11674)
                     /gene="yedF"
                     /locus_tag="SB815_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG0906568.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLNPVVDENAQEFCIKVQKKNFDSSEVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(11785..13887)
                     /gene="ccaA"
                     /locus_tag="SB815_000816"
     CDS             complement(11785..13887)
                     /gene="ccaA"
                     /locus_tag="SB815_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HEG0906569.1"
                     /translation="MFKSLNIGLKLIFSVAAVVVIGLVILISLITKQVSQNITKNTED
                     ILASITKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDN
                     SAYSNFTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIAN
                     LQVVQDILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAIPIFDRKNQVVGVIGMTLD
                     FSDIATYLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKA
                     ISEGKNGVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGA
                     SFIFIFVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGA
                     MGRIINENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKDVL
                     NRMLDVLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLA
                     SSNFAKDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVA
                     SQADDIKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKS
                     LSEIEANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITN
                     EVNQIAAAILEDVNKKRF"
BASE COUNT         4591 a         2534 c         1726 g         5077 t
ORIGIN      
        1 ttctttattt gaaatttcag ttgaaattac agctcttaaa ttgccattat ttcttatcat
       61 ttttactaga tatctcgtat caagttcata aattcctatt tttccatgtt tttcaagata
      121 atcttgcaga ctttctttag cgcgaaaatt tgaaaaactg gaacttaatt cacgcattaa
      181 aacaccactt gcaaaaattt ccttgctttc attatcattt tcattggttc ccactatacc
      241 aatttctggc atggaaaata cgataaattg ccctgcataa gaaggatctg aaataatttc
      301 ttgataccct gttaaagaag tgttaaatac aagctctcca aaaaaagtac cgctctttcc
      361 aaaagcctta gcacttaaaa aaatatcatt ttctaaataa atataagcct tcattaaaac
      421 ataccttttt ttctaagctc ttcttgatag agtttttcaa agataagatc gtattcttcg
      481 ctacctggaa taggttttgt tttataattg ctaattttct cataaacctc atcttcaagt
      541 ttttcataaa ttttaagata agactctatg cttgaaaaga ttaaattttt aactctattt
      601 tcactcacta taaaattaat ataatcattc tctacaagtt cttctaaaat ttgatgcgct
      661 agatgattat gtctatcttc agaatctaaa atcacattaa attcaggagc taactttttc
      721 ttcacaagcc aaaacatatt tttacgatct acttgcataa gctccatttc atcttcttgt
      781 tgctctaaaa gctcttttac tctttcatct aattttcttt catttagaat atctttctct
      841 aaaacttcta ttatacatac cttaagcttt tctaattgat ctttaatttc tacaaaagaa
      901 gaattagcta tatctaacat cattttattt gcgatataag gaatatgtgg taattttata
      961 cgcatcttaa aaacctttta tttgataatg tttgaaataa tagcttattt ttggtaaaag
     1021 aatgttaaaa atgaaaaatt ttcattattt taatcaccta attactagca ttattatcta
     1081 aatttttcaa aagcaaagta agctcgctag ctttttttgg atccatttta gataaaacac
     1141 ctgaaatttt acgcgattcc aaagaaagca ttattttgct tgcatcctct gcatccattt
     1201 gacttaaaac atctgcaatg gctgcatctt tcatttggga ataaatttct ttaaccctac
     1261 cttgtgtttt atcattgatt gaatttaaaa tcttttgttg ttcttctaca agccttgcgt
     1321 tttcaagctt taattcttca atttttgcca aagttgcatt aacctcagcc tctttttttt
     1381 ctaaattttc aagcctttct ttttgcaaag cttcaaaaga ggctttataa gcttctaaag
     1441 attgtcttgc ttcatcaaat tctctagttt gcaattcaat ttgagctttt ctagcttcaa
     1501 aatactgctc acaatcttgt tcagctccaa aaactacact tgaaataaaa actaacaata
     1561 taaatttttt aatcatcttt ttctcctttg aaaaaacgac tgattgcaat ttcatctaaa
     1621 aatttttctt cagccttggc aagttctttt tgcttttgtt taatttcctc ggcttctaaa
     1681 accttcattt tttcataatc taaatgtgct ttttgatata aaaactgata atgattcatt
     1741 tcttttttag aaagttctac tttctcctta gctcttgcca aagcctcgcg tcctacttgt
     1801 gccatactta aattcgatct taactctgct atagatcctg attttagcaa tacgcctaaa
     1861 ctttcacact cttggcgtga aagttcataa gctttttcat gttcaagctg tctttgtttg
     1921 gcttgattaa gatttgattc tgctttatca agttgttgtt ttcttacctt tacaacagaa
     1981 ttatatttac ttttcataag atgatagtat catctctttc agggctagta gaaatatact
     2041 ttaccttaac ccctgcaagc tcttcaagtc ttgctatata ttttttagca ttttctggca
     2101 ataaatcata atcttttata ccaaaaactt tatcccaacc atccatttct tcataaatag
     2161 gttgaacatt ttctaaatca cttggtatat agtcgatttc cataccctta tattcataag
     2221 cacgacaaat ttttatcttt tcaaaaccat ctaaaacatc aagcttcatc aaagataaag
     2281 catcaagacc attaagcctt gctgtatatc ttacagcaac cgcatcaaac catccacagc
     2341 gtcttttgcg tcccgtgctt acgccaatct cttttccaat ttgcgcaatt ttttctccat
     2401 cttcgccctt atcctcagta ggaaaagctc catttcccac acgcgttgca taagctttta
     2461 caatacctat aatatttccc gcttctttag gatttaaccc aagtcctgtt aaagtgcctg
     2521 ctgaaatagt acttgaactt gtaacataag gataagttcc atgatcaata tcaagcatag
     2581 aaccctgagc tccttctaaa agtactcttt tatcttcatc taaagccttc caaagcattc
     2641 ttgtagtatc tgtaatataa ggagttaaaa tttcattaaa acgttttaaa tcagcaagca
     2701 attcttcagc acttggaatt tcaatttcaa gcatttcaaa aaaagtttta ttagcttcaa
     2761 aatcttttat caaagcctcg caaagtcttt gtggttctaa aagctctcca actctatgtc
     2821 ctgtacgatt aatcttatct gcataagaag gtcctatacc cttacctgtt gttcctatgg
     2881 catttttgcc tttgagcttt tcttttgcaa tgtctattaa agaatgatgt tttaaattta
     2941 aatgagctct atcgctgata tataatctac cttttaaatt ttcaaattga gccatttcag
     3001 caatcaatac ttcaggagaa accacaactc catttccgat aatattaata catcttggat
     3061 gcaaaactcc acttggcata agatgaagcg catatcttac accatttacc caaatcgtat
     3121 gtcctgcatt gtgtccacct gcacttctgc aaacaaaatc ataattttca cataatttat
     3181 caactacctt accttttcct tcatcgcccc attgaatgcc gacaataata tctgctttgc
     3241 tcataaaaat ttccttgatt ttacttaata ttggcgagaa gatgagagaa tcgaactccc
     3301 caaagaatag tcaactatcc tttcatctga tttgaagtca gtggcgatca ccagatacgc
     3361 taatcttcca aagtgataat tatagcgatt tttaatgaaa aacaaaataa atttatcaat
     3421 attctttttg acttcatatt aaatttaagc tataatctca ctctttttta gcatcaagtt
     3481 ttgatgatta catttttagg atctttcttt gaattctttt aaacaaaaat atttaatcaa
     3541 tttttgggac aattcccgtt ctatgattgc acttggaatt ttaagtgcag tgtattttgg
     3601 gatttttggt ggcgtttggg ctgttactgg agaaatgaca cgttggggtg gcgagttttt
     3661 agagctttta ggtatgaatt tagatggata ttcttattac caaaagcaaa atttaaatgg
     3721 aaccccttta acaagaactg atggtattat gctcataggt atgtttatag gttgtttagt
     3781 agccgcactt ttagctaaca aagtcaaatt tcgtctacct gctagcaata taagaatttt
     3841 tcaagcaata gtaggtggaa ttctttcagg atatggagca agacttgcat ttggatgcaa
     3901 tttagctaat ttttttacag gtttacctta tttttcttta cacacttggc tttttactgt
     3961 ttttatggtt ttaggaattt atctaggagt gaaaatttgc aacacttcct tttttaaacc
     4021 taaagctaaa ttagaacgtg taaataaaga aaacttgccg ttaaacaagc aaagtttgcg
     4081 tacaaaatta tattttaact taggcatatt gcttttcata gcctttttag tttgggtgtt
     4141 ttatcttgtt tttacaaatg gcaatatcag cacacaaaac aaacaaagtc ttctagcttt
     4201 agcactgatt tttggttttg tttttggctt tgttatttct agagggcaaa tttgttttac
     4261 ttcttgcttt agagatttat ttttatttgg tagagataat gctataaaag gcgcattaat
     4321 cggtatgatt atcgcctctt taatcgcttt tgcttttatc ttgcaaggtc atactagcaa
     4381 actcatagaa ctttctcctg ctgtagctgt gggagcattt ttgtttggtt ttggtatagt
     4441 ttttgccgga ggttgcgagt gtggttggac ttatcgtgcc tttgaaggac aaagtcattt
     4501 tataatagta ggaattgcaa atataatagg aactatgatt ttagctttaa gttataactt
     4561 tttaccaaaa gcttttaaag aaggtataaa aatcaatctt ttaactgaat ttggcaattt
     4621 aaatggattt tttatcaacc ttattttatt catcttaatg tttgtttttg tagtatttta
     4681 caaaaaacac ttttttaaaa atcaacttaa aggataaaca gtgaaaatta cttatagttt
     4741 aaatttacaa ggtgaagctt gtccttatcc tgctatagca acacttgatg tcttacctaa
     4801 gcttaaaagt ggagaaattt tagaagtact ttgtgattgt ccacaaagta tcaattccat
     4861 acctcaagat gcaaaaaacc gtggttttaa agtgcttgaa atcgatcaaa gtggacccac
     4921 actaagattt ttaatccaaa agccttaaaa aaggctttta ttctcaaagc tcttttaaca
     4981 tcttttcata agctgcctta gttccagatc ttacatttgt aaacaaactt gcaataataa
     5041 tcaccaccga agctactaaa aaccctggaa ctatttcata aagacctgaa tttgcaaaat
     5101 tcttccaaag caccacagta gcagctcctg ttatcatacc taagatcgct cctactcttg
     5161 tcatcctact ccaaaataaa gaaaaaagca ttacagaacc aaaagaagct ccaaatccag
     5221 cccatgcata agaaactata ctcaaaacac ttgagttttt atcagtagaa atcaaaaacg
     5281 ctattacagc taccaataaa acacctaatt tacctaaatt taatacaata tgacttggtg
     5341 catcttctct aaaaatcttt ttataaaaat cttccgctat agtagaactt gaaaccagca
     5401 attgtgaact tgccgtactc ataatagccg ctaaaatagc actgagtaaa atacctgcta
     5461 tccaaggatt aaataaaagc tgcgacatca cgatgaaaat cttttcagga tcttgcaaac
     5521 ttaattcaaa tttatgcaca taagctatac ctaaaatacc tatcatacaa gcacttaaaa
     5581 gacaaaccgc catccaagca atacctataa aagtggccat aggaatatct ttagtagaac
     5641 gaatcgacat aaaacgcact aaaatatgtg gttgaccaaa ataacccaaa ccccaagcaa
     5701 gtgcagatat aatgcttaca attcctactc cttcgcccat agataaagct tgtggcttta
     5761 tttctcttac tatattcatc gcttcaccaa aaccacctaa atgataaagc ataaccaaag
     5821 gtacaataat taaagccatc atcattaaaa gcccttgtat catatccgtc caacaaaccg
     5881 ccttatatcc acctaaaaaa gtataagcaa caataataat cgttccagta gttaaagcat
     5941 aatcgtatct gataccaaaa gtactttcaa aaagttttgc tccgcttaca agccctgatg
     6001 aaacataaaa ggtaaaaaat atcaaaatta ccaccgcaca tacaatgcgc agtatatgtt
     6061 tatcatcatc aaaacgagtt tcaaaataat caggaatagt caaagaattt gcaatcacac
     6121 tggtataaat tctaagtctt tttgccacaa aaatccaatt taaactagct cctatagtaa
     6181 gcccaattgc aatataagaa tctataaaac cacttacata taaagctcct ggtaaaccca
     6241 ttaaaagcca accactcata tcagaagccc ctgcgctaag tgcagatatc acaggcccca
     6301 tagtacgccc acctagaaaa taatcctctg aatttttatt ttgcttataa aaataaaaac
     6361 ctatataaag cattaataag gcatacacta caaacatcac tgctattggg gtattaattt
     6421 gaaccacttc catcaatctc tccttgatca ttaagatatt gctctaatgc ctaaatttcc
     6481 ataacgatga aaagatatac ttaaagcttt ttcattaaaa taatttaaaa gttcaaaacg
     6541 accatttaat aatggctttt ctcttataat gattttagca agctttgcag cctctttata
     6601 aatctcatca tttacatctg gctttgctaa ataacgcact ctttcatatt ctttaatact
     6661 cttgataaaa ttttctttat tttcttttaa aaacaatact tttgctccta tgctttgaac
     6721 aattcgttct atcatactaa catcttgttc atcataactg atacttagat caatatttgc
     6781 aatatttgca cctaaaacca cacctaaaac atcttttaag ctttcatttc cacaaagtct
     6841 taaaaccata ttctttattt tagtataaga aaaaagatta tcttctccac gaatattgac
     6901 ataatctttt gaaacactaa actcgttttt ataatgataa gcataagatt gagacatttt
     6961 aattaaattg tttataaaat cttgtgcttc ttttaaatct atttgtgcta atttttttga
     7021 aaatttatct tcaattaaat gatcatcaaa atcttcttgc ttaatctcta aaaattgagt
     7081 gatataatta taaattccca cttttctacc caaacctata gctgattttt taatcccacc
     7141 aaaaggttga cgcagcacta tagcccctgt ggttggttta ttgatataaa tatttcctgc
     7201 ttctatgtga gtgtgaaaat actcccattc tctttcatct aagctttcaa aacctgcagt
     7261 taaaccataa cctgtggaat ttactatatc aatagcttct tttaagtctt tagccttcat
     7321 cacacttaaa atcggtacaa aaagttcatt catatgagta aaatcaccct ttttagtgcc
     7381 atattttatg cctggagtca tcaaataagg attatcctct aaaaacttag gttttaatgc
     7441 ccattcttca taaggttgta attcatctaa ggccttttga actttagaac ttggcttatc
     7501 agctaaagta cctaatttat ttttaaattc aaaaggattg cccactgcca tagaactcgc
     7561 agcatccact aaagtctttt taaattcttc atcatgataa acctcttctt ctaagactag
     7621 caaagaagta gctgaacatt tttgaccgct attgctaaaa gcagaatgaa tgatattttt
     7681 aatcgcacta tcacgatcag caaatttaga aactatagtc gcattctttc cgccagtttc
     7741 agcacttaaa agcaaggttg gattagcttt taacatggca taagcagtat cctctcctcc
     7801 tgtaagaatt gaaaatttaa tcgcttcatc aataagtaaa tatttagaaa tatcacttcc
     7861 ttttgaaggt aagaaaatca aagcatcttt tggaataccc gaatcccaaa aacacttaca
     7921 aagcatataa cctgttagag ttgaaagtga agaaggtttg taaatcacca cattacctgc
     7981 ggctagtggt gcagctatag tacctactga aattcctata ggaaaattcc aaggagctat
     8041 ggtaacccct atacctttag gtgtgaatgt aacttttgga ttttgttttt taagctcttc
     8101 taaagagtgc ggataaaact ctataaaatc aatagcctcg cttacttcag gatcgatctc
     8161 taaaaaggtt ttgcccactt ctaaagctgc caaacctatc aaatcccctc ttctttctct
     8221 catcagtttt gcacttttgg ctaaaatttg ataaatttca tcatgacttt tttgtgtaaa
     8281 tttggaattt ttagctactt ctaaagcttg tttgatttct ttttctcctg ctaaataagc
     8341 ctttcctata actctatctt cgatcttatc tttaacttct aaaacattta aattttctgc
     8401 tttaaaatca agttcgccta taacaggata aacatcataa tcttttaaat tttcatattt
     8461 agttttaatt tctttagccc acactctatt ttgtgctaaa ataaaatccg tatcgctttc
     8521 attgctaaat tttttacctt cataagaact tatgatattt gattctttat ttctatcttg
     8581 cttacgatgt gtagtattat caagagtttt tatgccttct aaagatttta aaaaaagttc
     8641 tttttggata ttccagttct tatctcctac tttaagattg aaaaaataac gcataaaatt
     8701 atcttcactt gtattttcat caaggcgtct tacaagataa gcaatggcat tgttaaaatg
     8761 tgcttcatcg caaactgggg cataaaggat tagatcatgc attttagata attcataaga
     8821 acattgcaaa ctcatacctt caagcatttc aaaagtaaaa gaatccaaag cacccacttc
     8881 acttatgcgt gtataagcat aagcaatctc aaagatatta tgacttgcaa ttcctatgtt
     8941 gatgtattta taattatctc cttcaagaat aaaatcaagc attttattat aattactatc
     9001 agtatctatt tttttgtaaa aagtaggaag ctcccaaccc ctttgagacg caatggtttc
     9061 ttcactttcc atattagcac ccttaacaaa acggatctta ataggcttca taccttttaa
     9121 aaccctctct tttgaaaaag caaaaagttt tttaagatac ttataagaat caggaatata
     9181 agcttgcaaa acaatccctg ctttaatatc aaatttagcc acactttcca taaaagctgc
     9241 aacggtgagc tctaaatccc taaattcttc catatcaaga ttgataaatt tagatacacc
     9301 ttgttttttc tcttcttcta aggctaaagc ataaagataa tctagtcttt ttacgacctc
     9361 ttctttagaa taattaaaat ctataatatt aatttgtgaa aaaatagtag taatttttat
     9421 ggaaatataa gtgatatagc ttgattttaa ggcttcttcg tatttttgca tacgatattt
     9481 actctcagct tcacctaaaa cctcttcgcc gattaaattc acatttaagg taattttatc
     9541 ttgctctttt cttttcttaa tatgtggttc taaaacacta ggatttgcat ctagaaccat
     9601 agctttagta tcttctctta aatgtttgac aaaaaaaggt acacttaaat taggagcaaa
     9661 tttgccaaaa tttaaaaagc taaaaagtag gaatttttca aaagtgctaa aaaaatccgc
     9721 tatgccatat ttactcaaag tatattctat aagctcaaaa cttgcatttt tatctttaca
     9781 tctaaaagaa cgatctaaaa gctctataag cataacttta tttttgggat tattaagaag
     9841 tttttgcatt ttagcatgaa attctttttc agaatttgaa atattggctt ctatttgtcc
     9901 ttgtaattct tcagctaagg ctaaagcttt ttgtatcatt tcgtatctcc taagataaaa
     9961 taaattttaa taaataatat ataaataaga taaaaaataa tattttaaat catagaaaat
    10021 gtataaaaaa tgataaaaaa aattttaatg ggtatataag taacaaaaat taagaaatga
    10081 taatatcatt ttcttgctta tttacaacct tagcaataat tttagcttga atattttcat
    10141 cttctagttt ttttaaacat tctaaggaat ctttttcact tatagaaatt aaaagtcctc
    10201 ctgaagtttg tggatcacaa agtaataatt tttcttcatt taaatcaggg gtaagttctt
    10261 ttataaattc taaattttta taagctccag caggaattaa acccatatta aaatactctt
    10321 ttactccatc taaaaaagga agttcacttt caaaaatttc aaaagaaata tttttattta
    10381 gcatttcttt taaatgtcct aaaagtccaa aacctgtaac atcactcatg gcacttggat
    10441 gaaatttaag agcaatttga ctggctttat aatttaactc tatcatgttt ttaagcatta
    10501 tatctaaatg tttttgattt aacatttgcg cctttaaagc tgtacttaaa attcctgttc
    10561 ctaaaggctt ggttaaaatg atacaatctc cgattttaga agtattatta gcaataaatt
    10621 tactaggatg tacttttcct gtaacactaa gtccaaaaaa aagctcggtg ctttctatag
    10681 tatggccacc cacgactaaa gcattacatt ctttaacttt atcatttgca ccttctaaaa
    10741 gctcttttaa gatgtttaaa tcatgattgc aagtatcaaa acctactata tttaaggcat
    10801 taattacctc tgcacccata gcaaaaacat cgcttaaagc atttgctgca gcaatagcac
    10861 caaaatgata agcactatct actataggag tgataaaatc aagcgtttgc accaaagcta
    10921 aatcggggct gatttgatat acgcttgcat cttcattatt tccgatatca ctaagtaaag
    10981 caggagtttt ttgcatgaaa tttaaaattg ttttaagacc acccgggctt aatttcgctg
    11041 ctcagcctgc tgctttaaca aaatgcgtta aattttgatt tttatattgc agtgtttttc
    11101 cttatagagt aatgattttt gctttaccaa aaagctcgtt taaaatttca taagcattgc
    11161 ctatatttcc tattttaagt tctttgcttt tattaaaaaa ttctagacaa gctccacaac
    11221 ttatgatctc aatacctaaa ttttcaagtt ctttcatagc taaatgtgct ttatgatttt
    11281 catcaacatt gattaaaaca ctttcattta cgcaaagaat tttacttgga gcatgatcta
    11341 aattttttaa ggtacttaaa aatcctacaa gtaaattttg tcccaattca ccctcaccca
    11401 ctttgtcggt ttttaaaaat aaaacattat aatcgtgaat atttacttca ctagaatcaa
    11461 aattcttttt ttgtactttg atgcaaaact cttgtgcatt ttcatctaca acagggttta
    11521 aatttaaaga gttaagaaat tttacaacat tattttttga aataatagaa tttaaaacaa
    11581 tttctaaaat ttcattttct tgaagttttt caagagcgtt ttttgtttca actataggct
    11641 gaggacaaga tagattgcga caatcaattt tcattatttt tccttgatat tagctttgaa
    11701 aaataatatt attttattac ttgttttgtg tttaaaaatt ttaaataata tagaaaaaat
    11761 ttaaaagctc aaaaatgagc ttttttaaaa tcttttttta ttcacatctt caagaattgc
    11821 cgcagcaatt tgattgactt catttgttat attattggtg acatttgcaa cttcgacatt
    11881 ttccttagtt acagtttcaa gttgtgctat agcatcgtta atctgtgtga ttcctgctgt
    11941 ttgttctttt acagattctg ctacttcatt tacgctttga acaagtatat taatatttgc
    12001 ctcgatttca gataaggatt ttcctgttct ttccgcaagc tgtcttacct catctgcaac
    12061 aactgcaaaa ccacgcccat gttctccagc acgtgcagct tcaatagctg catttaaagc
    12121 aagaagattc gtttgctcag cgatatcttt aatcacattg acaatatttt ttatatcatc
    12181 agcttgtgaa gcaacctcaa ctgtttttcc acttacattt tgcatagaag aattaatctc
    12241 ctccacagct gcagccgatt gttctaaaga actcgcttgt gcattagagc catcagcaag
    12301 tttttgcata gaatttttta actcttctga ctgattggct aaatctttag caaaatttga
    12361 agaagccaaa agcatctttt taatttcttt gcctaaaata ttagttgtaa tctcaacttc
    12421 acctttagca ttaaatactt ctgtactaaa atcaagagcc ttataactat caaaaactct
    12481 attaatttca ttcatattag aaccaatttt actttgtaaa acatcaagca tcctattaag
    12541 aacatcttta agttctacta attgaggatt tataggattt ttagtaattc ttgcagttaa
    12601 attacccttt tcgatttctc tagcagtttg caccgattca tctacagcat tttgatcttg
    12661 ttctaaagat atttgaatct tttcaatatt ttcatttatg attcttccca ttgctcctag
    12721 ctcatcatta gcacgaattt caatagcctt aggttcaatt ttttcatgat ttaaaaaacg
    12781 gaaaaatgat tctaaagaac taagaatcac aggcaatcta gatgcgacaa tttttcttac
    12841 gcaataataa accactccta aaacaacaaa aataaaaata aaagatgcac caagaataat
    12901 taattgtaat ttttttaagg gtttaaatac tgaatattta ggagcagtta ccaaaactgc
    12961 ccaagaacta tcttgcactt taaaactatt aatcgcagca taagaatcat caccatcaga
    13021 agctatatag ttaaaaactc cattttttcc ttcacttatg gccttataag tttcttgtgc
    13081 acctttatta ggattgatat cttttaaatt ttttaaaact agatttttat ttggatgtat
    13141 cgccataaaa ccatctgaat ttaaaagaac tcttaattca ccatcatatt tttgaccttt
    13201 agggtctaaa agataagtag caatatctga aaaatctaaa gtcatgccta tgacacctac
    13261 aacttgattt tttcgatcaa aaataggtat agcaacattt acagcatcaa aatcttgacc
    13321 ttctaaattc atcttaatag gacggcctat atatacttta ttttccccat attttgcttt
    13381 ttttaatata tcttgcacaa cttgcagatt agctatttca tcactagctt gtattgcttt
    13441 tattccgcct ttattatcct tttcttcatc agcgtaaagc ataacaaatt ttccactttg
    13501 agtattaaaa aatttactct cttctttaaa gtattctggc ggatcaataa gatataaata
    13561 agtaaaatta gaataagcac tattatcaaa agtattggtt ataatatttg ttatattgtc
    13621 tatatctaaa tcttctttag aggttgatct aaacatttct gttaaagtac ctgaaatact
    13681 tttatttaaa gcgatcattt ccccaaaaat tccttgagtt tgagtagcat attctttcgt
    13741 gatagaagca agaatatctt ctgtattttt ggtaatattt tgacttactt gttttgtgat
    13801 taatgaaatt aaaataacaa gtccaataac aacaacagct gccacagaaa aaataagttt
    13861 taaacctata tttaaagatt taaacatctt ataactccta aaataaaaat ttagattcta
    13921 attttaac
//
LOCUS       DARBAR010000037        13919 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.037, whole genome shotgun sequence.
ACCESSION   DARBAR010000037 DARBAR010000000
VERSION     DARBAR010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13919
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.037"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..497)
                     /locus_tag="SB815_000817"
     CDS             complement(<1..497)
                     /locus_tag="SB815_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906570.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDDAQDDNAS
                     KTLET"
     gene            complement(554..1321)
                     /gene="fliR"
                     /locus_tag="SB815_000818"
     CDS             complement(554..1321)
                     /gene="fliR"
                     /locus_tag="SB815_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HEG0906571.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMGGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFF"
     gene            complement(1308..1943)
                     /locus_tag="SB815_000819"
     CDS             complement(1308..1943)
                     /locus_tag="SB815_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0906572.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSSLYQIDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKTYTINANGIC"
     gene            complement(1956..3029)
                     /locus_tag="SB815_000820"
     CDS             complement(1956..3029)
                     /locus_tag="SB815_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEG0906573.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSAEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(3029..3820)
                     /gene="rpsB"
                     /locus_tag="SB815_000821"
     CDS             complement(3029..3820)
                     /gene="rpsB"
                     /locus_tag="SB815_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEG0906574.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(3936..5099)
                     /locus_tag="SB815_000822"
     CDS             complement(3936..5099)
                     /locus_tag="SB815_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG0906575.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNKVLDK
                     VREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            complement(5227..6351)
                     /locus_tag="SB815_000823"
     CDS             complement(5227..6351)
                     /locus_tag="SB815_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG0906576.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFVVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(6348..7598)
                     /locus_tag="SB815_000824"
     CDS             complement(6348..7598)
                     /locus_tag="SB815_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEG0906577.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(7600..8103)
                     /gene="petA"
                     /locus_tag="SB815_000825"
     CDS             complement(7600..8103)
                     /gene="petA"
                     /locus_tag="SB815_000825"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEG0906578.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(8194..9480)
                     /locus_tag="SB815_000826"
     CDS             complement(8194..9480)
                     /locus_tag="SB815_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HEG0906579.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     ACFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILYFSREKNQEKIYISTKKMM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVTVFVLYVRVLPKRLEF
                     KLIKKEQISLKLFFLCIVFLFLFVISFFIGEIFNIKISFFALLWAGIFWLIILKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYAFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            complement(9481..11340)
                     /gene="mnmG"
                     /locus_tag="SB815_000827"
     CDS             complement(9481..11340)
                     /gene="mnmG"
                     /locus_tag="SB815_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEG0906580.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     TRNKLLKLSNLEISQEQASALIVENDEVKGVKTNLENTYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQIQMLRSVKGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFEIMDNYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKIQKKKA"
     gene            complement(11428..11925)
                     /gene="cetB"
                     /locus_tag="SB815_000828"
     CDS             complement(11428..11925)
                     /gene="cetB"
                     /locus_tag="SB815_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HEG0906581.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNLCKDADKTYNELIFS
                     LQEAK"
     gene            complement(11943..13322)
                     /gene="cetA"
                     /locus_tag="SB815_000829"
     CDS             complement(11943..13322)
                     /gene="cetA"
                     /locus_tag="SB815_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HEG0906582.1"
                     /translation="MIKNGLLLTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
     gene            complement(13427..13906)
                     /gene="cetC"
                     /locus_tag="SB815_000830"
     CDS             complement(13427..13906)
                     /gene="cetC"
                     /locus_tag="SB815_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HEG0906583.1"
                     /translation="MSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKSHNIVR
                     HEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNIINYYSV
                     RRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIFNLQENN"
BASE COUNT         4865 a         2614 c         1695 g         4745 t
ORIGIN      
        1 tgagtttcta aagttttgct tgcattatca tcttgagcat catcatcaaa actcaaatct
       61 tccattccct ctgaatttat atctaaagaa ttttcatcag gcaaatcatc taaatttaaa
      121 ttatctaaat ccaagcttat atcagcataa ggattttcat cattgcttaa cattggcaaa
      181 tcaatagatg tatgcttgtt cgcatcttta ttattaagca aatttaaaaa atctgtaggt
      241 aaaaaaggtt tttgtaaaat ttgcgcatct atatcttcta cattttgatt tcgcggggct
      301 aaaaaaatca atctatcgca tttttcttta agaattttta aaggtgctgg agtatcacta
      361 tctacaacaa tcacatcata attacccaaa ttttcactat aagcattaag ttcttcaaaa
      421 tcataagaca tttttttagc actaaggctt acaagtcttg aaactacagg gttttcattt
      481 aaaagtaaaa ttttcatcac tttaatcctt aaaaaataat cgctatttta cgataatttc
      541 atttatcctt tccttagaag aaaaaaagag tttgcatatg agtaaaaagt tctaaaatta
      601 aatttttaaa atattgcatc ataactagta aaatagcaat caaaactaca aaacctagag
      661 ctatctttat aggatagcca ataactaaaa gattaaattg tggcattgtt ttcatcaaaa
      721 gtccaaaaat aacatcggct aaaagtgaaa ttccaagtat aggaaagctc atagtaaaac
      781 ctatgatgaa aatattaaac atacccatat ttaaataatg cattaaattc tcatgcggat
      841 aaaatccacc taaactaata taacccaaag aatgacttaa aaacaaaagc attaaatgat
      901 ggccatcaaa agcaagaaaa aacatcaaag caagtaaatt taaaatttga gatgtgatag
      961 gcatactcgt tccagaactt ggatctaata tacttgccat agtaaatccc atagtaaaag
     1021 caatctgctc acctgccatc ataataatag caaaaataat ttgaagcatt aatcctgcta
     1081 tcattccaaa aatcacttca ctaataagct gtaaaacaaa aaaactatct aaatgcaaag
     1141 attctaatct agccaaagga tataaataca tagtcaaaaa taaaactata gtacttttta
     1201 tcaccatagg aatagaatta tgtgaaaaaa aaggaaaaaa aactataaga ccacccattc
     1261 tagcaagaag caacataaaa gttacaacat ttttatcacc taaataatta acaaattcca
     1321 ttggcgttta tagtataagt tttatcacaa aaacttgcaa gcttgctatc gtgagttaca
     1381 aaaaataaag ctgcatcatt ttctttaaca taggaaatta aaagctcgat aacattttta
     1441 gcattatcaa aatccaaatt tccagttgct tcatcagcaa aaataatctt tggtttttta
     1501 caaagcacac gtgcgatact cacacgctgt tgttgtccgc cgctaagctt tcctattttt
     1561 tgatgtaaaa gcgtatcaat acctaacctt tttaaaattt tctcatctaa atcttgaccc
     1621 gataaaacac tagcaagttc gatattttct aaagccgaaa aacctttaaa aagataatgt
     1681 gtctgaaaaa taataccaaa atcataacgg cgaattttta atctttcgtt ttcatctatc
     1741 tgataaagac tagaaccttt aaaaaaaact tcaccttttt ttggaatcaa taaagaagaa
     1801 agtatatgca aaagagtaga tttaccacaa ccgctactcc cttgaatagc aatgcaatct
     1861 ttggtattta aagtaagatt taaaccctca aaaagcggat aatcaaaact atggcttaaa
     1921 ttttccgctc ttaagagttc catttttaac cgtttttaaa gttgtgcagc aacttcagcc
     1981 gcaaaatctt cagttttctt ttctaaacct tcgccaactt caaagcaaat aaattcaaca
     2041 attttaattt ttccgccaaa ttctttttct ttttcagcaa ttacttgttc tacagttttt
     2101 ttatcatcca ttacataaaa ctgacccatt aaagtaagtt tgctatcgag ttgagaatta
     2161 tcagctataa aactattcat tttgcccggg ataatattgt cccaaatttt ttcaggttta
     2221 ccttgagctt taagttcttc tttgattttt tcttcagctt cttttaaaat tgcatcgctt
     2281 aattgtttgc gacttgcaaa ttgaggaatt ttatgttcag gtttatttgg atctttaagt
     2341 ctacgtcttt cttcattttc tttttcaagt tcagcaacca aggctttgta ttcattttca
     2401 acaaaagtca tatccaaatc ttcataactt aaataacttg gtctcattgc tgcaatatgc
     2461 atacaaattt gtcttaataa atctcttgat tttgaagcta cttcagcact atcacaagct
     2521 gcagcgatca caacaccaac acggccattt gtatgaatat aaccatttac aacgccgtta
     2581 gcacctgctt ttaaagttgc aaatcttctt acaactaggt tttctcctat agttgcaatt
     2641 tgacttttta aatattcttc aaattttaca ccattaatcg tacttgagtg aagttcttct
     2701 acactttgca agctattgct ttgaatatga gctgtagtat cttttgttaa agcgataaac
     2761 tgatcatttt ttgccacaaa atctgtttcg gaattaatct cacttacagt tgcgcttgta
     2821 aaatcatcac ttacttttac acttactaaa ccttctgcag caagtctatc tgctttttta
     2881 gcagccttac ctaaaccttt ttctcttaaa agttgtactg ctttatcaaa atctccatta
     2941 gtttcactca aagcattttt acaatccatc atccccgcgc ctgtactttc gcggagttct
     3001 tttaccattg cagcagtaat ttcagccatt attcttgctc ctcaccgaag tcttcttcgc
     3061 tcatcgcttc atctaaaact tcttttttct cttcatcggt gatttctttt tcttcatttg
     3121 ctaaagcttc gccatcttgt tctcttaaag cttttccttc attaatcgct tcagccattt
     3181 cttggcagaa aagttgcact gaacgaattg catcatcatt tcctggaata ggataagtta
     3241 ccaagtcagg atcacagttt gtatctagtg gagctacaac aggaattctt aatctatttg
     3301 cttcttgaac agcaattttt tcttttactg tgtcaataac aaaaatcata tcaggttgag
     3361 ttttcatata acgaattcca cctaaataag ctaataattt ttcttttttt cttgtaagca
     3421 ttaaagcttc ttttttagtt aaaagtttaa tacttccatc ttcttccatt ttttcaatta
     3481 cttctaattt tctaattgat tggcgaatgg taccaaaatt tgtcatcata ccgccaagcc
     3541 atctatgatt tacataaggc ataccgcatt tttcagcgta ttctttaatc gctccacctg
     3601 cttgtttttt tgtcccgaca aaaagtatag tttttccttc ggcagcagcg tcacgaacga
     3661 tattataggt atatctaaaa tatcttaaag ttttttgtaa atcaattaca taaatacctt
     3721 ttctctcgcc aaaaatgaat tttttcatct ttggattcca gcgtcttgtt tggtgtccaa
     3781 aatgcacacc gcattctaat aaatctctca tactaaccat gagtttctcc ttgtaaattt
     3841 agctttattc ctccacatcc cttaatttac acaagctaaa aaggattgat gcgtgtgaaa
     3901 tgaagctaat attttatcaa atttaagttt agtttttact tatatatgta gtccttggta
     3961 aggcttagat tattattgat ttcttttgtg attaaaaatt gaaacaaatc cacgcttcca
     4021 acacgaaaag cagaggcaca agaacgaagg tataaatccc acattcttat aaattcttca
     4081 tcatattttt cccttacctt gtccaatact ttgttaaaat tttcatccca taaatctaaa
     4141 gtttttgcat agtgcattct taaactttct gctaaaagaa gatgaaaatc ccactcactc
     4201 atagcactta caacctctct taaagaaggt aaatatcctc ctggaaaaat atatttatct
     4261 atccaagcat ttgtttttcc ttcaaacatg gctaaaatag aatgtaaaag catagaacct
     4321 ccaggtttta acacttgttt tactttcatg aaataaagtc ctaaattctc tttgcctaca
     4381 tgttcaaaca tacccacaga aacaacttta tcaaaataat tttcaaattc taaatcttga
     4441 taattttgaa gtcttatttc tattttatct tcaagaccaa gttcttttac tctttcctta
     4501 gcttttttac actgctcctc tgaaatagta attccaacaa ccttaactcc atacttttga
     4561 gccgccataa tagaaagcca accccagcca caacctatat ctaaaagctt ttctccttct
     4621 tttaaatcaa gttttttaag agtatgttct attttgttaa tttgagcttc ataaagagta
     4681 ttattaggct ctttaaaata agcgcaagaa tagctcatag tatcatcaag ccaaagctta
     4741 taaaaatcat tacctatatc ataatgactt ttgatatttt tactttcctg tttttgggct
     4801 attttactca agatatcctc tgtatttttt aaaaaacgct tatttgaaaa ataatacaaa
     4861 actttagcta tttcatcata atcaccttct atttctagtt tagactccat ataatgtttt
     4921 gcaaaaacta aactcgtatc actaaataat tttaaaaaag gtattttttc tttgaaaatt
     4981 aaagaaaatt tagcaggctg attacccaca tgaaattctt cttgatccca aaatacaatt
     5041 ctaaaatttc cataattcca ttttgaaaga ataaatttaa tcatttgttt ttcaagcatg
     5101 acatactcca actaataaaa attattattt gatagtatct cttaattatg tttaaaattt
     5161 gataaaattg aagaaaagat agaatttttg ccacagatat aaaatagtgg caaaaatttt
     5221 ataatactaa tgtaatttag accaaacaga acgcttccaa cctatagcaa aaatacttaa
     5281 aattacaaag aatatcatta cataaattcc tgtagttttt ctttcttctt ttttgctatc
     5341 acccacttga tcaatataag atacaacctt agcctgtgca gcttctgtta aacctactct
     5401 tggcatagcg gttcctggaa gaagtttttg agtattatta ataaaatcat gtaaatattg
     5461 ctcaccacga gatcttatca tcatagaaag atcaggtgga acagaaccta aataagtttt
     5521 taaatcattt tgatttgatg gagtaaaaaa gctatcgtat ttcatatcat gacaacgtcc
     5581 gcaagcctca ataaaagttg ctttatcttt agcaaatttt atatcttttt ccattaaagc
     5641 tgctttttga gcactatttt ccattttagc atattttgcc tcaacatctt tcttaatagt
     5701 agcatcttca ttggcttcaa atttaacact cacatcttta agataagcaa ttacattggc
     5761 tatatttgca tttgtagctt cttcactttc tcctgaagta tctttattgt aagctgtcat
     5821 aataaaagca tcaccaaatt tatgatctac ttttaaagca agcgcaggat gcataatcaa
     5881 agctgctaaa aatttttcat caaaaatagc accagctgca ctgagatcag gcggtattac
     5941 tcccatagaa gaatcagtaa tattagccgc tattccatct tcttttacac catgacatgc
     6001 aaaacagtta ttttcaaaaa attctttacc tttttttgca tcacccttag caaaatcgat
     6061 ctttgcaaca tctgcccaaa gtgtttcaac cttgcttaat tcttcttttg ctttttcaag
     6121 ttctttgttt gcactctcta ttcttttagc atctcctgaa gcttgtgcat cttttagagc
     6181 taattcttta gcttcaacta taccttttgc aaaagtagta tcttcaacaa caaaatcaaa
     6241 atttgcagga gcaacatgag gcttcatcac tgaatgagca taaggctcta ccccccaata
     6301 tacaagtgca gtaaaaacta ctacaactaa aaatattttt atttctctca ttgtttagct
     6361 ccttttctct ccataatagt aataaccggt aaaactacaa taagtaaaag taaaaatact
     6421 atagaagcgt aaaatcctac ccaagcattt acacctgttg gaggtaattt tccataaact
     6481 gttaaaacaa ttaaatcgat aagcaatatc caaaaccaaa tgaaaaataa aggtctttca
     6541 tgagctggtt ttaccacatc acttctatca agccaaggaa gcaagaagaa aatcacttga
     6601 gcaataccaa atgcagccaa acctatatca aaagctttaa tacctgcaat atcaaagaaa
     6661 aatcctctta aaacttcata actccataag aaataccact caggataaat atgagctggt
     6721 gttttaagcg cattagctgg atcaaaatta attggatcca ttgcaaattc aaatttaaaa
     6781 cagaccaaat aaaagaagaa aatcataaaa aagcttatat acataaaatc ttttgataaa
     6841 aatcctggcc aaaaaggaat cactttagaa ccctttgtgt cacctgccat gtatttttca
     6901 gcctctaaat caaagtcaag ttcttcagaa atttcattat taacatgagg aattcttaaa
     6961 gaatagaagt gaaatgctat aatagcaatg ataactatag gaagcaagca cacatgaagc
     7021 ataaaaaatc ttgttaaagt tggatcagaa accgcataat ctccacgaat ccaaatcaca
     7081 agctcagggc caataaatgg tatccctcca aaaagattag tgattacttg agctgcccaa
     7141 taactcattt gtccccaagg aagcatatac ccactaaaag cttcagcaga aaatacaaca
     7201 aacaaaagca taccgctaac ccaaatcatc tcacgacctt ttttataaga accgtaataa
     7261 attcctgtta gcatatgtat gtatataatc aaaaatacaa cagaagcggc aacaccatgc
     7321 atgtgacgcc aaagccatcc atagtccacc tcttgcataa tagtcttatt cacactatca
     7381 aaagcaagtg cagtatctgg tttataatac atcacaagta aaagtcctgt aacaaaaagc
     7441 actgcaaaaa gagtggttaa aataaccccc attgcccaaa gaaagttaat ttgctttggt
     7501 atccaatact ttaccattaa aacatcaagc agtttatgta ccgcaagtct ttgatcaagc
     7561 caatctacaa gaccattagc ttttctaatt tgtgccatct taagcctccg ctatcatttt
     7621 tttatattca ggaccctctt cacctaaaac aagcttggtt ccatcaattt taaaaggagg
     7681 aatttcaaga ggctttggag gaggtccaaa gacatttttt ccacttgtgt caaattctcc
     7741 accatgacag gcgcatttaa acaattgctc acttggttgg taagcaggta tacaacccaa
     7801 atgcgtacaa agtcctataa ccacagtata agctgcgtta tctaccacaa catcacgttt
     7861 ttcatctttt ggcatactcg catctttttt taatataaaa ataggctttt tacgccattc
     7921 tatagttcta agctccccat cttgcattcc tgataaatct actgtagtaa aacctgcagc
     7981 tttaacactt ggaagcggat cccaagtttt tttcatcgca acaagtgaga aaacaccgcc
     8041 tacagcagct acgcttccaa atgcaaagcc cataaagctt cgtctactct cagatgtagc
     8101 cataacttgc tcctttcgat tttatttttt aaccaagtta aaagtttatc gaaattaaaa
     8161 taaatttttt ctttgtttaa caagttttga tatttagaca ataagagcaa aaagagaaaa
     8221 aacaagcaca ggtaaagtta tcaaaaagcc aaatttacaa tattgccaaa aagaaatatt
     8281 aatgcctttt ctagccaaaa ctccaagcca aagcaaagtt gctaaagaac ctattggcgt
     8341 aagttttgga cctatattta cacctaaaag atgtgcataa atcatcaaag aatcaaaaga
     8401 aaaattctca aaatattctt ttaatgccaa atctccgatt aaaaccatag gcaaattatt
     8461 aaacacagaa gatccaaaag ctgaaatcaa ggccacacca aaaattccac tcttatcttg
     8521 catcaaaaaa gcatagcttt taaccaaaat ttcactcaca cctattttat gtaaagcaaa
     8581 aaccaccata taaagcccaa aactaaaaag caaaactcca taaggtgctt caaaaagaat
     8641 tttaatactt tttttacctt gaatttttaa aataataagc caaaaaattc ccgcccaaag
     8701 caaagcaaaa aaacttattt taatattaaa aatttcacct ataaaaaaac tgataacaaa
     8761 aagaaataaa aatactatgc aaagaaaaaa caatttcaat gaaatttgct cttttttgat
     8821 taatttaaat tcaagccttt taggtaaaac tctcacataa agcacaaaaa ccgtaactat
     8881 agtagaaagc aaaacaaaaa aatttggcaa aaacatattt ttagcaaatt ctaaaaattc
     8941 tatcttaaaa taatttgctg tgatgatatt ggttaaattt gaaataacca aagcgtttga
     9001 acttgcatcg cataaaaaag aaaggctaag taaaaaagaa cttaaaataa aagcatgatt
     9061 tttacaatct ttaagagttg aaaataaagc tataataata ggtgtaatga ttaaaatcgc
     9121 tccatcgtta gcaaaaaatg cagaaagaaa aaatacaaaa atcaacaaaa ataacatcat
     9181 tttttttgta ctgatataaa ttttttcttg atttttctct ctagaaaaat acaaaatttt
     9241 actcgcaata aaatcaaaaa atcccaaagc ttccaagcta aaagaaagga taatcaaccc
     9301 aaccaaagtt aaagaactat cccaaaccaa agaaaaaaca aaacaagcat ctttaaaatc
     9361 taccaattga aaaataaaaa caaaaaaagc ccccaagcta gaaaataccc aaataggtaa
     9421 attccatgga cgccaaaaaa gtaaaactaa agtagataaa aaaataaaaa aagcaagcat
     9481 ttaagctttt ttcttttgta ttttgatata aatttgtaaa atatctaacg ctgcaggagt
     9541 gattccactg atttgacttg cagcaaaaat ggttggaggt ttatgatgat taagtttttc
     9601 tacaacctca ttactcaaac cacttacact tttaaaatca aaattttcag gaattttaag
     9661 ctcactaaga tttttcattt tttctacttg agctttttgc atactaatgt aatgataata
     9721 ctttgcctca tttaaaattt ctcttaaaga ataattatcc atgatttcaa atatagggtc
     9781 aagttttttt aatttttcta tatcaaaact tgctcttgca acaatttttt gaagattgac
     9841 tatagaagaa attttatctt ctcctaaact ctctaaaaaa gcattatttt ggttattagg
     9901 cgtaaattct ttagaaagta aaaattcaag tcctttttga agattgtttg caatattttg
     9961 tatataagta aaatcttgct cgcttaaaag ccctaaatca tagccatatt ttccaagtct
    10021 aagtatagca ttttcttccc ttaaaagcag tctaaattcc gctcttgaag taaacattct
    10081 ataaggttct tttgtgcctt ttactaccaa atcatcgatt aaaactccta tataagcttc
    10141 atcacgcctt aaaatcaaag gctctttcat atctatgctt aagcttgcat tgattcccgc
    10201 cataaagcct tgtgctgcag cctcttcata acctgtagtt ccattaatct gtcctgcaca
    10261 ataaagattt ttaatctttt taagttctaa agtatgctta agttcagttg gctctatata
    10321 gtcatattct atagcataac caaaacgggt tattttagca ttttcaaaac cctttacaga
    10381 acgcagcatt tgaatttgta cctcataagg caaagaagta gaaaaaccat tgatataata
    10441 ctccgtcgca tcgatagttt gaggctctat aaaaagatga tggctttctt tgtcgctaaa
    10501 acgattgatc ttatcttcta tagaaggaca ataccttggc cccacacctt caatctgtcc
    10561 tgtaaaaagc ggggcacgat aaaaattatt cttaataatc tcatgtgtag ttgtattagt
    10621 gcgtgcgata taacaaggaa gttgagtagg attgaaattt cttgaacgaa aactaaaagc
    10681 tttaggattt acatcaccat cttgaatttc aagcacgcta aaatcaatgc tttttgcatc
    10741 cactcttggg caagttcctg tttttaaacg tcccattttt aaacccaaag tttgcagata
    10801 atttcctaaa tttaccgaag caagctcccc tacccttcct gcttgaagtt tgttttcacc
    10861 tacatgaata agtccattta aaaaagttcc tgttgtaagt atcacttttt tggcaaaata
    10921 tgtgttttct aaatttgttt tcacgccttt aacttcatca ttttctacaa ttaaagcact
    10981 cgcttgttct tgagaaattt ctaaatttga aagttttaaa agtttattac gtgtaatgat
    11041 acggtattta tccatatcaa tttgtgccct acttccttga acggctacac ccttactttc
    11101 atttaaaatg cgaaattgta tccctgcttc atcggtgatt tcacccataa gaccacccat
    11161 ggcatcaagt tcttttacca aatgtccttt tgcaagtcca cctatggctg gattacaact
    11221 tgccgctcct atttgctcaa tcaatgtagt taaaagtaag gtttttttac ccattctagc
    11281 agcagcagca cttgcttcaa cacctgcatg tccaccacct ataacaatga catcaaacat
    11341 attttgcctt gaaaaatgtg aatttttaaa agaaagatta tataatattt agacttaaaa
    11401 caaactcgtt ttaagtctaa caaaaattta tttagcttct tggagagaaa agattagctc
    11461 attataagtt ttatctgcat ctttgcataa atttttaagc atctcaacac ccttatttaa
    11521 gccttgttgc tgttctgctc ttaaaagatc gctataaaga ctttctattg tagaaatagc
    11581 gcttttattt ggcatacgac gaacggaata atagcctatg atattattat taacatctat
    11641 tgatggggtt acatttgcaa aaacccaata gtaattgtta tctttggttt tattttttac
    11701 gtaagcaaaa atttctttgc cttctttcat ataatcccat aaatatttaa aaacagtttt
    11761 tggcatctct tcatgtctta ctatgttatg aggtttattt aaaacttcac ccatggtata
    11821 acctgcatac tttaaaaaat catcatttgc ataaactatt ttacctttta aatctgtttt
    11881 agaagtaatt aaactatctt cttgtaaaaa aatttctctt gacattttcc caccctctta
    11941 atttatattt ttaattttgc taagatttca gcacttcttt gctctagtga tttaatatca
    12001 tttacaatcg catcataagc tttttgatcg atataatctt gacttgattc ttctattgct
    12061 tttttagcgt tatcttttat aaattcttta gctaaattta actcagtttc agaactaagc
    12121 tcattaataa caccttgagc tctctcatct tgacaaagat tagaaattgg atctacactt
    12181 tcaagattga aattttgagc cccatttaaa tttaaatata tatttgattt ataaagaata
    12241 tgatcgattt taaccacaga caaaatcaat ctctttgcaa aggatccaaa attaacacca
    12301 agagcactac tattttcttc tagacgttta aaagcttgag aaaatttatt aattctttct
    12361 tcagattcac taacaatgtt aaaaacttgc tcactgccac tttggatatt tacaaaatct
    12421 tgttgcatag tctgaattgc aatagaaatt tcgcttgtag atctttgagt tctttctgct
    12481 aactttctaa cttcatcagc cacaaccgca aagcccctac catgctctcc tgcacgcgca
    12541 gcttcaatag cagcatttaa agctagaaga ttggtttgat cggctatatc acgtattact
    12601 tcaaccactg aagtgatatt ttgtgaatta gccacaaaag tttgtactgt ctccttgctc
    12661 gaatttacaa catccattaa agaacccata gcactttgaa gagaatccac ctctgaacca
    12721 ttttctgtag ctgtatgaga aatggcatcc actgtatcat atacattttt catcatgcta
    12781 atatcttgat ttaatgagct agaaatttga gacatgtctt tattttgatt tccaaggctt
    12841 aaatccatta aagttcttga taaagcattt ttaaaagtag atcttgctgt cacttctatg
    12901 tttgctaaag ctttatttat aaattcgata ttatgagcaa aaattccttt taaaccttca
    12961 ggcaaagcct tacgataaaa ttcacctttt tgagaacatg aaatagaagt attaatttcc
    13021 cttaagtaag cttctagccc atcaatagta ttattaagat tatctgctat ttcggctaat
    13081 tttttgcttt ttgtttttac atagatgatt ctattgtcga aattaccctc ctttaactct
    13141 ctacaaagaa ccaaaagttt atctatcatt atttgctcat ctttgtgttg tctaagcaaa
    13201 taaatcatta aaacagcgat taaaacaaaa attatcgctc caacaaaaat atgaataaaa
    13261 atgacaccta aaacaccgat aacacttaga aaaatagtta acaataatcc attttttatc
    13321 ataaatttac ccctttttat tgaaaatttt ttgaagtcat aaatcaaaac aatgctttaa
    13381 cttctaggtg aaaattatac aataaaaaag ataaaatata tcttatttaa ttattttctt
    13441 gtaagttaaa aataagttca ttataagtca ttttataaga acttacaata tccattaaag
    13501 ctgaaactcc agcattaatg cccgattttt gctctttttc aagtaaaatt ttataaactt
    13561 cttcaattat agaaagagat tttctattag gtgcacgacg aacagaataa taattgatga
    13621 tatttccatt agtatcaaat gaagcactta catttgcaaa aacccagtaa aaattaccat
    13681 ctttggcttt atttttcaca aatgcaaaaa tttcatctcc tttttgaata taatcccaaa
    13741 gacatttaaa tacagtgcgt ggcatatctt catgtcttac tatattatga gatttataca
    13801 aaagttcatc aactttataa cctgcgtatt ttaaaaagtc attattggca taaatgatat
    13861 tccccttaag atctgtttta gaagtaatta aagcattttc agacaaaact atttctttc
//
LOCUS       DARBAR010000038        13571 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.038, whole genome shotgun sequence.
ACCESSION   DARBAR010000038 DARBAR010000000
VERSION     DARBAR010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13571
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.038"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..495)
                     /gene="tilS"
                     /locus_tag="SB815_000831"
     CDS             complement(<1..495)
                     /gene="tilS"
                     /locus_tag="SB815_000831"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEG0906584.1"
                     /translation="MQIKDEILSLLKRGKNLLAFSYGSDSSVLFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQ
                     GYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRSNYTLLRPLLFISKDEIS
                     SFLKE"
     gene            complement(485..1804)
                     /gene="rimO"
                     /locus_tag="SB815_000832"
     CDS             complement(485..1804)
                     /gene="rimO"
                     /locus_tag="SB815_000832"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HEG0906585.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGHLSAYELCDEPSKADVLIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFINYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGKSSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            1878..2975
                     /gene="prfB"
                     /locus_tag="SB815_000833"
     CDS             1878..2975
                     /gene="prfB"
                     /locus_tag="SB815_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEG0906586.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(3133..3447)
                     /locus_tag="SB815_000834"
     CDS             complement(3133..3447)
                     /locus_tag="SB815_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906587.1"
                     /translation="MKKILTSALALGAMTLIVDCGDGDLVELKNNGNDQAMFDLGNQE
                     IMKKYPNYKLYDYTSVRTISDINNPEGKIKEMKRDLEIDKTPYSNYVFLLNPNDKKTI
                     KL"
     gene            complement(3569..4687)
                     /gene="truD"
                     /locus_tag="SB815_000835"
     CDS             complement(3569..4687)
                     /gene="truD"
                     /locus_tag="SB815_000835"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEG0906588.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSEASGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFTHENKLRIGHLKGNSFFIRLKKVLPSDALKLEQALMNLDKQG
                     FANYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(4656..5477)
                     /locus_tag="SB815_000836"
     CDS             complement(4656..5477)
                     /locus_tag="SB815_000836"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEG0906589.1"
                     /translation="MNKEDFIIKAFLNKKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEIAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYALYSGEEYEILFAFDEKERQNIEIIAKKHGVKLNIFGKAVKGKYEFRGREHHF"
     gene            5564..6637
                     /locus_tag="SB815_000837"
     CDS             5564..6637
                     /locus_tag="SB815_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HEG0906590.1"
                     /translation="MKKLELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQN
                     DDIYFDFDKDEDTYIVVNKQIIPLFTPLEKIAKEFDFNLCIEPLSTKRAIKDLIIDKN
                     DFLDKYKYLEKFGDEEDKKLYAKYDYLYYATEILDYLPEYMGDGVFYLASKMIEKYPE
                     KKIEILKTLADKEKGIFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNA
                     FDNEIKELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNP
                     TLSYKIAADIVLDAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSKRDFEDFYILSRFE
                     FLALIEGIQAPSLKNHTLKVSLI"
     gene            6634..7017
                     /locus_tag="SB815_000838"
     CDS             6634..7017
                     /locus_tag="SB815_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG0906591.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIHTAKP
                     LFIISKNSPFLSIPFSKETLFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            7010..7693
                     /locus_tag="SB815_000839"
     CDS             7010..7693
                     /locus_tag="SB815_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmD family RNA methyltransferase"
                     /protein_id="HEG0906592.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPPKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALIAAEA
                     LSNYALKAYAIELDIKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDIREGFSDIYEKIYHFLENLDLKTLNLIIFEYHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYSS"
     gene            7752..8798
                     /locus_tag="SB815_000840"
     CDS             7752..8798
                     /locus_tag="SB815_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HEG0906593.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGTGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANNIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNTVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            8798..9139
                     /locus_tag="SB815_000841"
     CDS             8798..9139
                     /locus_tag="SB815_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906594.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     KALKEQTNAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            9202..9399
                     /gene="flgM"
                     /locus_tag="SB815_000842"
     CDS             9202..9399
                     /gene="flgM"
                     /locus_tag="SB815_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HEG0906595.1"
                     /translation="MINPIQQSYVANTALNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            9442..9876
                     /locus_tag="SB815_000843"
     CDS             9442..9876
                     /locus_tag="SB815_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HEG0906596.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            9886..11712
                     /gene="flgK"
                     /locus_tag="SB815_000844"
     CDS             9886..11712
                     /gene="flgK"
                     /locus_tag="SB815_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HEG0906597.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRFP
                     DLQNTGILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASDMKVKDSILNDPSTVRASSNGVDSGNDMANKIIQ
                     LQYKKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            11729..12493
                     /locus_tag="SB815_000845"
     CDS             11729..12493
                     /locus_tag="SB815_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HEG0906598.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            12497..13261
                     /locus_tag="SB815_000846"
     CDS             12497..13261
                     /locus_tag="SB815_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEG0906599.1"
                     /translation="MGFEHLNTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFFTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(13254..>13571)
                     /locus_tag="SB815_000847"
     CDS             complement(13254..>13571)
                     /locus_tag="SB815_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEG0906600.1"
                     /translation="FLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSG
                     RLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGV
                     NFN"
BASE COUNT         4993 a         2216 c         1992 g         4370 t
ORIGIN      
        1 ttcttttaaa aaagatgaaa tttcatcttt acttataaag agtaaagggc gtaaaagtgt
       61 ataatttgag cgtttttcac actcttgcat acctaaaatt tcagccaaac ctgcgcctcg
      121 tgaaagttgc atcaaaaacc attcaaattg atcgtttaaa tgatgggcta agataagatg
      181 gtcataacct tgctcaagac aaattttttc aaaaaaatca tagcgaaaat ctctggcttt
      241 tttttcaaag ttactttgaa atttaggagc gtgttttatg aaaatttttt tatgaaattt
      301 taaagcaagt tctttggctt ttaactcttc taaatcacta ttttttctag ttttgtaatt
      361 tatcatcaca agatcaaagt cgatcttttc ttgcattaaa agataaaaaa gcacactaga
      421 atcacttcca taagaaaaag cgagtaaatt tttacccctt tttaaaaggg ataaaatttc
      481 atctttaatt tgcatctact tttcttaaag ccttagcaag gagcttttta tcaaggtttt
      541 gtaaaatttc acattcataa atttgcccca tttctaaatt tccacattca ctttcattga
      601 taagaatttc cccatcaatc tctctatccc atcttaaatc tttagctgcg atgaaaaact
      661 ctccctcgct actttttcct gtgcaaacta ctaaacgctt ttgccctact tctttttcaa
      721 aacttttttc tatgacttca tcaacaattt tttctatgat tttaagcctt ttattgatca
      781 ctttaaaagg cacttgctcc atatcaaaag cagccgtatc ttcttcctta gaatacgcaa
      841 aaacgcttat cctatcaaaa ccaaaatctt taacaaactc acaaagctct tcaaaatccg
      901 cctcactctc acctggatgt cctacgataa agcccgtgcg taaaaaacta tttggcgcac
      961 ttttcattaa atttagcatt tctttaagtc ttgtgctatt tgccccacgc ttcatgattt
     1021 taagcatatt atcacttatg tgttgtaaag gcatatcaaa ataatttata aaaatttcag
     1081 aagctataat gcgtttaatc aaagcttcac tcgcactcgt aggataaaga tataaaattc
     1141 tagccgctct tatgcctttg attttttcca cctcatcgat taagcgtata agcccatctt
     1201 tttcaccctt atcaaacaaa taagaactcg tatcttgtgc aataaaagaa aagtccttat
     1261 aacctctagc taccaaatct ttaagctcag ctataatgct acttatctca cgagatttta
     1321 acttgccttt aaaacttggg atggcacaaa aagagcattt ttgattacaa ccttcggcga
     1381 tttttataaa agcatgggaa tttgaacctg tgataatacg tttagaattt tcactttgca
     1441 aataagtcga atttgaaaat aaatttgttt ttttaagtat catttcatcg attctttcat
     1501 aatcacccac acctgtgaaa agatcaacct caggaagttc tttcataagt tcttcgcggt
     1561 aacgctgcat caaacaaccc gtaaccacca aaagagaatc tttttttctt tgttcgtgca
     1621 aatccaaaat cgcattaata ctttcttttt ttgcactatc gataaaacca caagtattta
     1681 cgattaaaac atcagctttg cttggttcat cgcaaagttc ataagcacta aggtgcccta
     1741 gcatgatctc actatcgact aaatttttat tacaacctaa agacataaga taaagttttg
     1801 acattttttt cctatattaa agttttcttt tgatataatt tttgacttta aaaatataat
     1861 tatagcaaag aaattttatg gataattacg aatttagcga acttttaaaa actttaaaaa
     1921 acaaagtcgg caacatagcc tccatcatca agcctgaaaa tatccaaaca aggcttaaag
     1981 aaatcgaaga gcttgaaaat tctccttctt tttggagtga tgttaaacaa gcaggaatca
     2041 taggtaaaga aaaaactaaa atcaccaatc tacttaaaaa ctatgaaaat gcttttaatg
     2101 ctctaaatga cgcaagcgaa cttttcgatc tggccaatag cgaaaacgat acagaaacac
     2161 ttgaagcttt atttaatgac gcaccaaaac ttgaagatac catcacaagt cttgaaattt
     2221 ccatgctttt aagcggggaa aatgatggta aaaatgccat tgtttccatt cacccaggtg
     2281 caggtggaac ggaaagtaat gactgggcaa gcatacttta tagaatgtat ttaagatttt
     2341 gtgaaagaga aggttttaaa gtcgaaactt tagactttca agaaggcgaa gaagcaggac
     2401 ttaaagatgt gagcttttta gttaaaggag aaaatgctta tggttattta aaagctgaaa
     2461 atggtatcca tcgtttggta agaacttctc cttttgatag tgcaggacgc cgtcatacaa
     2521 gcttttcaag tgttatggta agccctgaac ttgatgatga tatagaaatt gaaatcgaag
     2581 aaaaagacat aagaatagat tattacagag caagcggtgc aggcggacaa catgtcaata
     2641 aaacagaatc ggctgtgaga atcacgcatt ttccaaccgg catagtcgta caatgccaaa
     2701 atgacagaag tcagcacaaa aacaaagcca ccgcttttaa aatgctaaaa tctcgccttt
     2761 atgaacttga actcatgaaa caacaagata gtgctaatac tggagaaaaa agcgagatag
     2821 gttgggggca tcaaatccgt tcttatgtgc ttttccctta tcagcaagtc aaagacaatc
     2881 gcagcggaga agctttttct caagtggata atatccttga tggggatatc aaaaaaatga
     2941 tagaaggcgt tttgattgct ttaaaagcgg agtaacaggc ttaaaaataa gtaatttctg
     3001 caaaatgtcg gtataaaaaa attagaaaga tagcgggatt ttcccgcttg ttttattatc
     3061 ttgcataaaa cctaagagca tcattcacag aataataaac tcttttctta aaatctttat
     3121 cgcaataaac actcacaact ttatagtctt tttatcgttt ggatttaata agaaaacata
     3181 gtttgagtat ggagttttat ctatttctaa atcacgcttc atttctttaa ttttgccttc
     3241 tggattgtta atatcactaa ttgttctgac tgaagtataa tcataaagtt tataatttgg
     3301 atattttttc ataatctctt gattacctaa atcaaacata gcttgatcgt tgccattgtt
     3361 ttttaactcg actaaatcgc catcgccaca atctacaatc aaagtcatag ctcctaaagc
     3421 caaagcactt gttaaaatct ttttcattat ttttgctcct agttttaaaa ttaaattaat
     3481 ataactatac ctaaatttaa aatttaaata tcatttttgc aataaattct aaagtaaaaa
     3541 tcacgtaaaa atttaactca taattatttc attcaaacaa atttttatgc aaaatttctt
     3601 ctaaaaccac agtagcataa gagccttttt gcaagaaaaa ctctatacaa aaatgagctt
     3661 tttcttcatc ataacgccat tttaactctt ctaaatatcc ccacataaag cgtcttgaac
     3721 cttgcatttt agccttaaac tccaaagtat ctttaaaaat ttcattttct aaatttaagg
     3781 ccaaaccttc tcctgtttca taagccttag caccgattaa aagccccatg gcgcttatat
     3841 ctcttgcctt aaaacgccca agctcagcac ttaaatcctc gcataaaaaa cactttccaa
     3901 aaggataatg ccctaaaacc tcacctttta aaagcttaaa aaattgttct tgttttttaa
     3961 gttccttagc ttcttcttta gaaattttat aaatttggat caattctttt tcgctaaaat
     4021 catttgcaaa atgtgataac tccactcttt tactcaaata gcgattaaaa agctcacttt
     4081 gaaaagctga aattaaaaac tctttcattt ttacattttt catctttttg ccacgcaaaa
     4141 tttcaagccc ttctttgtaa ttatccccaa attttccaaa acgctgatag ccaaaataat
     4201 tcgcaaaacc ttgtttatcc aaattcatca aagcttgttc tagttttaaa gcatcgcttg
     4261 gtaaaacttt ttttaagcgt atgaaaaaag aatttccttt taaatggcct attcttagct
     4321 tgttctcatg ggtaaaaatt tctaaaattt taagtttagg atgagaaaaa tttgacaaaa
     4381 aactctcaaa ttttttaggc atagaaaggt attgaaaggt tgatccttgc ttgtctttaa
     4441 gccctgcata accaaaatct cttattttaa ccccgcttgc ttcacttaaa atttttaaag
     4501 cttcatttgt ggttaaatct tttttattga tatgcaaaat aagatgctca cccttaccgc
     4561 taaattcata caaaggcctt tcacgcacta caaaatcatc gctattttta ctaaaatacg
     4621 cattaatagg actgtgtttt aaactataca aaggcttaaa aatggtgttc tcttcctcta
     4681 aattcatatt ttcctttcac tgcttttcca aagatattta atttcacgcc gtgttttttg
     4741 gctattattt ctatattttg ccgttctttt tcatcaaaag caaacaaaat ttcatattct
     4801 tctccgctat aaagcgcata atcatcaagt tttttaaacc aagaaatacc gcatttattt
     4861 aaagctaaaa gccttgataa atccttgctt aaaccatctg aaatatccat agcacaagaa
     4921 attaaaggtg cgatttcata aaaaaaacta gctcttaatt ttggctttat aaatacatgg
     4981 tttggtttta aagtgccccc attttgtaaa atttcaagcc cttttaaact tcgtcctaat
     5041 tttcccgtat aagcaagtaa atgccccttt tttaaacctt ttctaaaaac agctttatcg
     5101 ttaatctttg aaatgatagt aagactaatg tctattttat cattgcttat agtatcaccg
     5161 cctatgattt ttatattaaa tttcctagct gtttttaaaa aacctttttg caaggctttg
     5221 atctcatttt cgcttaaatt ttttggtaaa gcaagtccta aaagtgcgta ttttggtaca
     5281 gcattcattg aaatagcatc tgagatatta acaagcattg cttttgtagc aatttgctct
     5341 aagctaaacc actctctttt aaaatgcaca ttttcaaaaa acaaatcctt actaaaacac
     5401 caatcatcaa taatagctcc atcatcacca ttttttttat ttaaaaaagc tttgataata
     5461 aaatcttctt tgttcataat gcgtgatttt ataaaatttc cttttaaatt ctagtgaatt
     5521 ttagaaaaat tttatataat ataaaaatat ttaaggaaaa accatgaaaa aattagaatt
     5581 aagaattttt agatttgata aaactaagga ttatgaggct tattataaac cttatattta
     5641 tgataattat gaaaattttg caagttttta tgatctgctt ttgcaagttc aaaatgatga
     5701 tatttatttt gattttgata aagatgaaga tacttacata gttgtaaata agcaaatcat
     5761 accacttttt acacctttag aaaaaatagc aaaagaattt gattttaatc tttgtatcga
     5821 gcctttaagt acaaaaagag ctattaaaga tcttatcatc gataaaaatg attttttaga
     5881 caaatacaaa tatcttgaaa aatttggcga tgaagaggat aaaaagcttt atgcaaaata
     5941 tgattattta tattatgcaa ctgaaatttt agactatctt cctgaatata tgggcgatgg
     6001 agtgttttat ttggcttcaa aaatgataga aaaatatcct gaaaaaaaga tagaaatttt
     6061 aaaaactcta gcagataaag aaaagggtat tttttatcat cttgaaagca aaaatgaaat
     6121 tttagaaaca acgatcaaaa acctacaaaa tgaaatttta aatttagggc tttttgataa
     6181 aaatatttta cactttgatt tacctaaaac caatgctttt gataatgaga tcaaagaact
     6241 taaagaaatt aaacataatt ttaaagattt caatatagct ttttatggtt ttaatgcttg
     6301 cgatacttta aaatccaaac ttaaggctaa atttatttcc tatgaaaaca gtataaaaaa
     6361 taatggcttt agcttgctta atctaaatcc tacgctaagc tataaaatag ccgcagatat
     6421 tgttttggac gcttatgata gcggggctga ttttatggta gtaaaagaag aaaaagattt
     6481 ttatcttttt gatacttgtg ctaaaaaact tatgcaaaca agcaaaagag attttgaaga
     6541 cttttatatt ttgagccgtt ttgagttttt agcccttatc gaaggcatac aagctccatc
     6601 attaaaaaat cacactttaa aggttagttt gatatgaaaa tctctttaga atgcaaagat
     6661 ctcatcatag aaaaaacttt agaacttttt ttaaaagatc atttggtaat gaaaaaaaat
     6721 tgtgatttca tcattagcga tgaaaaaatt cataccgcaa aacccttatt tatcatctct
     6781 aaaaactctc catttttaag cataccattt agcaaagaaa ccttgtttga gtctttaaat
     6841 gaatttgaca atgccttaaa agcagcagct ttgcaacttg cacttgaaca aaaaagactg
     6901 cttgaagaaa aaattgacgc tattgctttg gaatttaaaa aagattatga aaataaaatc
     6961 gatcttgcca taaaagatct taaaaacaaa ctcgtaaaag cacttaatga tgaatgatga
     7021 atttataagc gttaaagact tttttaatca caatgaaaaa agaaaaaaat ttcttcaaaa
     7081 acaagaaatt aaacctccta aagaaaaaac aaaaaaaact aaagaaacaa agctttatac
     7141 aaatatagaa agtggtaaat acaaagggaa aaaactactt ttacctagtc ttacaacaac
     7201 aagaagtact aaaagcatag tcaaaagttg tgtttttaat gtaataagag aagatttaag
     7261 aagtaaaatt ttcattgaag cctttggcgg aagtgcttta atagcggctg aagcactaag
     7321 taattatgct ttaaaagctt atgctataga acttgatata aaagcttata aaattgcttt
     7381 agaaaatgct aaaaacatag atccaaattt agaagtgatc catgcaaata cttttgaaat
     7441 tttacctaaa ctcatagaaa attcaaaaaa tgaaatcatc ttatatcttg acccaccttt
     7501 tgatatcaga gaaggtttta gtgatattta tgaaaaaatt tatcattttt tagaaaattt
     7561 agatttaaag actttaaatt taatcatttt tgaataccac tcaaccataa aaactcccga
     7621 aaaaatccaa aattttcaaa aagttaaaga aaagaaattt ggatcaacta gcttaagttt
     7681 ttactcttct taactcactt ggaacacttt ttgcttgatc tatcatcaac aatagattaa
     7741 aggaagaatc catgagagtt ttaacgatat ttttactctt tatgacaagc atttttgcag
     7801 tgcaaatcaa ggatgtagca aatactgtag gtgtaagaga taaccaactt ataggttatg
     7861 gacttgttgt agggcttaat ggaagcggcg atggaacaag ctctaaattt acactacaat
     7921 ctatctcaaa ccttttgcaa ggtatgaata tcaaagtaga tcctaatgat atcaaatcaa
     7981 aaaataccgc agctgttatg gttacagcca aacttccagc ctttgcaaaa agcggagata
     8041 aacttgatat taccgtttca tctatgggtg atgcaaaatc tttacaaggt ggaacacttt
     8101 tactgactgc acttcgtggg attgatggtg aaatttatgc tatagcacaa ggctctatct
     8161 caacaggagg tttaacacct agaccaggag gaacaggttc tcactcaact gctgcaactg
     8221 taatgggcgg agctaatgta gaaagagaaa ttccacaaaa ttttagccaa aacaatgatc
     8281 taaccttaag tttaaaagta gcggatttta aaaccgcaaa caatatagaa agagttttaa
     8341 atactgtctt tggcgaagaa gtagctaaag ccatcgactc tcgcacagta aaactcaaaa
     8401 aacctgaaga tctttcaaat gttgatttta tggcaagagt tttagaacaa gatatagctt
     8461 ataaaccaca aagcaaagtt atcatcgatg aaagaacagg aacagtgatt gctggagttg
     8521 atgtagaggt agaacctgtt ttaatcactc ataaagatat cactataaaa atagatccaa
     8581 acaataacac agtagctaat caaaatgaaa tcgatatgaa agatggtggt tttgtagatc
     8641 caagttcaaa taccttaaga atcaacaatg caaaaagcac agttgcaaat atagctagaa
     8701 tgcttaacaa acttggagca accccaaatg acattattgc tattatggaa aatttaaagc
     8761 gcgcaggtgc aattaacgcg gatttggaga tcatctaatg aaagtggata attttttaaa
     8821 tacttatagt atgaatagcg ctttacttga tcgtgcagcc aaagcaagaa gtttagaatc
     8881 aagcatcaaa ataaatgaca atgatatagt tacaaagagc aaagaagata aagccttaaa
     8941 agaacaaacc aatgcttttg aggcattttt tttaaagcaa gttttagatg tatctttaaa
     9001 aagtcaaaat tcactctttg gaaaagatgc cagcgatgaa atatactctt ccatgtataa
     9061 tgataccatg agtaaagctt taagtggagg tatgggtttt tcaaaattat tatacgattt
     9121 tttaaaagaa aggggttaag ttttttaaat ttaggtcgat atggtttgta gaggattata
     9181 actaagatca aggaggcaga aatgatcaat cctatacaac aaagttatgt ggcaaatacc
     9241 gcattaaata caaatagaat agataaagaa actaaaacaa acgatactca aaaaacggaa
     9301 aatgataaag cgagtaaaat cgcagagcag attaaaaacg gtacttataa aatcgataca
     9361 aaagctacag ctgctgcgat tgctgactct ttaatctaaa actttcattc tccttttttt
     9421 tgagagagaa aaggagaaaa tatgcttaaa caaagacttg atgaagtaaa tgctatctta
     9481 gcaaaactta ttgctttaac cgaagaagat atagaaaata tcaaagtggc taaacatgag
     9541 agtgtaacgc caagtgtaga agaaaaaaac aaacttatcg cggaatttat tacagctaaa
     9601 aaacaacttg atgttgcctt ggttgagcta aataatagct ctacaaaagg gcttagtgaa
     9661 ctcttagatg atgaagataa acaaaaacta gatctactta aaaaaaatct tcaaaacctt
     9721 catagtaaaa acaaagagta tgctaaattt gttcttattg tcaaagattt tcttgatggc
     9781 ttagtaaata aaatgtttga tatcaatgat ggaacaaata atgcttatgg agataaaaag
     9841 acaaatccag agtcaatttt caagatcaat gtataaggat ttataatggg tatttttgga
     9901 acattataca caggtgttac aggcttaaag gcaagcgaag ttcaaatcgc aacaactgga
     9961 aataatatct caaatgctaa tgcaactttt tatacacgcc aaagagtggt gcaaactaca
    10021 aatggatata ttacaacagg tggagttcaa gtaggcacag gaactgctgt agaaagtata
    10081 gtgcgtttgc atgatgagta ttcttactat aaattaaaag gtgcatctac tcaactagaa
    10141 tatactaaat atatggcttc cactttacaa gaaattgcgc agcgttttcc cgacttacaa
    10201 aatactggaa ttttgcaaga tttagaaaat tataacaaag cttggaatga ttttgcatct
    10261 aaccccaacg aaaatgccac aaaaatagcc cttgtaaaag cttctcagac cttaacagaa
    10321 agcgttaata acacttttgc aaccttagat aaaatccaaa aaaaagtaaa tgatgatatt
    10381 aaaaatacag ttgatgagat taatagaatt ggtgaagaaa ttgctactat aaataaacaa
    10441 atttatggac aagaagcctt accaacagaa cacgcaaatg aacttaggga tagaagagat
    10501 gaacttgagc ttactctttc aaagctagtt agtgcagttg caagcaaaaa tgaaatcaat
    10561 caagacaatc gccttgatac aaccatcact gatccaggac atcaatacaa tctaagtata
    10621 gaaggtttta gtatagtaga tggaataaat tttcatcctt taaagcttga ttatgatgat
    10681 aaaaataaat cttatagcat ttattatgaa actcctgatg aaaaagttcg cgatcttact
    10741 gcaaaaatta gcggtggaca gcttggtgct caacttgact tacgcggtag aaactatagc
    10801 aaaagcgaag gaaaatatga agatggaatt atccaaggtt atatggattc tttagatact
    10861 tttgctaaga ccatgatcaa tgaaactaac aatctttatg caagttctgc gaaaagttct
    10921 gttacttctg attatctatc tgggcttaag ggagatattc ctttagttaa ttacgataga
    10981 accatacaac caggaagttt tgatatagtc atttatgatg ataaaggcga taaaaaactc
    11041 accaaaacca tcaccataga tgtaaataca accatgaatg atatcatgcg ccaaatcaat
    11101 gctaatacag atgataatga caataaaaat tcaaacgatg atgttgatga tcatatcaat
    11161 gcaagtttta gctacgatgc aaaaactgga gatggtttat ttcaaatcaa tgcaaaatca
    11221 ggttttaagg tagccattga agataagggc acaaatttcg caggtgcgtt tagcataggt
    11281 ggttttttca gcggaactga tgcaagtgac atgaaagtaa aagattccat cttaaatgat
    11341 ccaagtacag taagagcaag ctcaaatgga gttgatagtg gtaatgacat ggcaaataaa
    11401 atcatccaac ttcaatataa aaaagttaat ttttataatg aagatggcac tatcgataat
    11461 cttactatgg aagaatatta ccgcaaactt acaggtaaaa tagcctcaga tggtgaaaat
    11521 aacaatgtcg tcaattcaag caatgaaact ctttataatt ctgtttatag cgagtaccaa
    11581 tctaaaagtg gcgtaaatac aaatgaagaa ttagccgccc ttatacaata tcaatcaagt
    11641 tacggtgcag cagcaaaaat cgtctcaacc gtagatcaaa tgcttgatac cttactaggg
    11701 cttaaatctt aagctctagt aatatcaaat gaaaaatttt atccatctta aagctaagct
    11761 cgatttttta gccaatcaaa aaaataccaa tcattccctt tttgaaactc cagatccttt
    11821 gcaaattgct aaaattcaca atgatgaatt tattgcctta atttgtgctt tatttgccta
    11881 tggaaatgct aaaaatatag taaattttct aaagaaactt gatttttctt tattaaacct
    11941 tcaagaaaaa caaataaaaa aagaacttaa aaatttaaaa taccgcttcc aaaatgaaaa
    12001 agatatacaa gaaattttta tcactctttc aaggctgaaa aatgaaattt cactctacga
    12061 acttttttat caagcctatc aagaaagaga aaataccaca gatgccatct tagcttttat
    12121 gcaaaaaatc aaaaccttaa attcatattc aagttatgga tatgattttt tctttggaaa
    12181 aatttggcaa aacaccccta cttcacctct taaacgctat aatatgtatc taagatggat
    12241 ggttagaaaa gatgaacttg atcttggact ttttaccaaa attcacacca aagatctttt
    12301 aattccactt gatacacatg cacataaaat ttccttgact ttaggacttc taaagcgtaa
    12361 aatatatgat tataaaagtg ttttagaact cacacaaaat ttaaaaaaat tagatgcaaa
    12421 tgatcccata aaatatgact ttgcactcta tcgtttaggg caaagtaagg aaattgacaa
    12481 atttaaggag tgaagaatgg gttttgagca cttaaatacg atttattatt tcatactttt
    12541 ttttgtagct ctttttgctg gttttataga ttctattgta ggtggaggag gacttattac
    12601 tctaccagca ctcatagcct gtggaattcc tgcgcattta tccttagcaa caaacaaact
    12661 ccaaagcgtc tttggttctt ttacggctac tttaacttat tttaaatcca ccactctacc
    12721 tcatcttgct tggggtgttt ttttcacagc cttaggagca gctataggaa gttatagtgt
    12781 tctttttgta aaagatgagc aattaaagct tattatctta atctttttaa ctcttacctt
    12841 cttatataca gccttacgtc ccaacttagg caaacacgaa agcgaaccta aaataaaaaa
    12901 tatcaaaatt tttcatttaa tttgtggctt aactttagga ttttatgatg gatttttagg
    12961 gcctggaacg ggttcatttt ggatttttgc ttgtgtgatg ctactaggtt ttaatatgag
    13021 aaaagcgagc attaatacta aaattttaaa tttcacaagc aacatcattg ctcttgctat
    13081 atttttatgg caatatgaac ttttatgggc tgtaggtttg cttatgggtg taggacaagt
    13141 tttaggagct tatttgggtt caaaacttgt gttaaaaact aatggaaagt ttataaaaac
    13201 tttattttta atcgttgtag gagctactat tattaaagta gcttgggatt attttagtta
    13261 aaattgaccc ctgagctaag ctcccacata ggtaaaaata tacctaaagc caaaaacaaa
    13321 actaaaagcg ctacaaataa agtcatcata ggctctaaaa aaatcaaaaa tctatccatc
    13381 aaattttcgc ttttttgttg ataatatttg gcaatttctt cacttaatac ttcaagtctt
    13441 ccacttttca tcgcaacact aagcatagaa aacaccaaag aatcaaaaat atcaatcttt
    13501 ttaaaagcct gacttaactc aagaccagaa tctataaaac taaaaagttt tttatactga
    13561 aaaattaaaa a
//
LOCUS       DARBAR010000039        13355 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.039, whole genome shotgun sequence.
ACCESSION   DARBAR010000039 DARBAR010000000
VERSION     DARBAR010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13355)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13355)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13355
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.039"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(3..722)
                     /gene="kdsB"
                     /locus_tag="SB815_000848"
     CDS             complement(3..722)
                     /gene="kdsB"
                     /locus_tag="SB815_000848"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEG0906601.1"
                     /translation="MIIIPARLKSSRFHEKILCDIGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKDHESGTDRINEACKKLALKDDEIIINVQADEPFIECE
                     NLLKFKEFASFCLDKKAFMASCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLSSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYERALKIYLEK"
     gene            complement(719..2131)
                     /locus_tag="SB815_000849"
     CDS             complement(719..2131)
                     /locus_tag="SB815_000849"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEG0906602.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNANNILSEFFNQGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEARNIKKEILDWMQQ"
     gene            complement(2128..3054)
                     /locus_tag="SB815_000850"
     CDS             complement(2128..3054)
                     /locus_tag="SB815_000850"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEG0906603.1"
                     /translation="MNEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLTQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFNFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            complement(3058..3798)
                     /locus_tag="SB815_000851"
     CDS             complement(3058..3798)
                     /locus_tag="SB815_000851"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEG0906604.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYTKIDEGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            3872..4468
                     /locus_tag="SB815_000852"
     CDS             3872..4468
                     /locus_tag="SB815_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG0906605.1"
                     /translation="MQIIKQACGVYETNCYILFTPKGEFIIDPGTDALLFIKKHVKNP
                     LAILNTHGHYDHIWDNAKVKKEYNIPIYIHKNDAFMLHDDFNQGYDSSDADFLVDNED
                     ILNICGVDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            4480..4785
                     /locus_tag="SB815_000853"
     CDS             4480..4785
                     /locus_tag="SB815_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906606.1"
                     /translation="MELDQILLYAFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFVGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(4826..5605)
                     /locus_tag="SB815_000854"
     CDS             complement(4826..5605)
                     /locus_tag="SB815_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HEG0906607.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(5605..6501)
                     /locus_tag="SB815_000855"
     CDS             complement(5605..6501)
                     /locus_tag="SB815_000855"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEG0906608.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            complement(6494..7744)
                     /locus_tag="SB815_000856"
     CDS             complement(6494..7744)
                     /locus_tag="SB815_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG0906609.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTI
                     PKIHTKEPKQDGVKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            complement(7741..8799)
                     /locus_tag="SB815_000857"
     CDS             complement(7741..8799)
                     /locus_tag="SB815_000857"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HEG0906610.1"
                     /translation="MAYEMIKLLLFKLNPEHAHALVEYSLRALSASFPGALSFLAHKY
                     IVDDESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VTKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            complement(8831..10573)
                     /locus_tag="SB815_000858"
     CDS             complement(8831..10573)
                     /locus_tag="SB815_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0906611.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            complement(10566..11954)
                     /locus_tag="SB815_000859"
     CDS             complement(10566..11954)
                     /locus_tag="SB815_000859"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEG0906612.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIGIKS
                     EIAKQILEILNDDLNVSKALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDATLYFQWGVSKEEREEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLD
                     TPNGTIWEKINA"
     gene            complement(11954..>13355)
                     /gene="murJ"
                     /locus_tag="SB815_000860"
     CDS             complement(11954..>13355)
                     /gene="murJ"
                     /locus_tag="SB815_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEG0906613.1"
                     /translation="FSRILGLARDVLIALFLGAGLYSDIFFVALKMPAFFRRIFAEGA
                     FGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFSSFFTKLFAFGFNADTIA
                     LAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAALFNLSIVIAAFFVDKNAP
                     QNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMTLSIKFKKTKAKLQGFYGNFFHG
                     VLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLALFAIALTQVSFPKILKH
                     LKSDQENLALKFMQRALALLSILLIASSIVGSVFALEISKLLFERGNFTHEDSVITAY
                     VLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLIISALCSMAFIFLIKDESL
                     KVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLVIVALIVFTILLILIKPY
                     ILSFFIGIFTSFKGVF"
BASE COUNT         4624 a         2460 c         1575 g         4696 t
ORIGIN      
        1 agttattttt ctaaataaat ttttaaagcc ctttcatagt cttctttagt atcaatcccc
       61 atgcttgttg ttgaaatttc aagcattttg atttttttac cattttctat agctcttaac
      121 tgctctaatt tttccgctct ttcaagtgca gaacttgata aagaacaaaa ctcccttaaa
      181 gctttgacac tataagcgta aatgcctaaa tgccctttaa aactttcctc gtaattttct
      241 ctttcataag ggattttagc tcttgaaaaa tacaaggcat acccttcttt atcgcaaagc
      301 actttaacca gattaggatc catagcttct tcttgagtga tttttttata acaactcgcc
      361 ataaaagctt ttttatccaa gcaaaaactt gcaaattctt taaattttaa taaattttca
      421 cattctataa aaggctcatc agcttggaca ttgataataa tctcatcatc ttttaaagct
      481 agtttcttac aagcttcatt aatcctatcc gtaccgcttt catgatcttt gcttgttaaa
      541 accgcattta gaccatattc tttagcgata cttaaaacct tttcatcgtc taaagctata
      601 caaacttcat ccacgctact tactcttctt gcagtagcca caaacatagg cactccacct
      661 atatcacata aaattttctc atgaaaacga cttgatttta atcttgcagg aataataatc
      721 attgttgcat ccaatctaaa atttcttttt ttatatttct ggcttcaaat accttttcat
      781 cgctattttt caaatcaaat aaagccaaaa tttcatcttt aacttggaca ttaaactctt
      841 tagctataaa ttttaaatct tctttttcat tcttagaatc cctatcatat aaagctttta
      901 tcatacttgg agtaaatttt gtccattctg ctgtagaagt gataatgcta ggttttaaag
      961 gatcaagcat tttaaaacaa gttgcggtat gcggatcgat taaaatcttg ctttgtttga
     1021 taaattgcat acattcttca tcggtgcaaa aatccgcctc aaaatcttct tgcaaacttt
     1081 gtaattcttc tttttcaagt ttaaaatatc tttcattttt taacaaattc atcagttctt
     1141 tagttctttt atctttaaat ttcgcaaaca aaagtctttc gatattagat gaaataagta
     1201 tatccatagc tggagaaata gtcttcttaa gacttttttc acgcaaatca taaacgcctt
     1261 gattaaaaaa ttcactcaaa atattatttg cgtttgaagc gattttgatt tttgaaattt
     1321 tagctcccat ttttttagca taaaaagctc ctaaagcatt gccaaaattt ccacttggaa
     1381 cgatgatttg tacttcttct aaaaactcat taaaaagttt taaactcgca taataatgat
     1441 aaataatctg aaataaaata cgcccaaaat ttacagaatt agctgcgcaa agctcataat
     1501 ttaaagcttt aatttcattt tgaaaatctt ttgaaaaaag caattctttt aaagtgcgtt
     1561 gcgctgcgtc aaaatcctca tctatggcaa aaactttcaa gttatcctta tctaaagctc
     1621 gcatttgcaa ctcttgaact ccacttgtgc caccttttgg atacatacaa gctactttaa
     1681 cattttttgc attttcaaaa ctttttaggg ttgcaggccc tgtatcgccg cttgtagcac
     1741 agataattaa aatattttta tcctttgaaa attcgcttaa aagcacgcca aaaggctgta
     1801 aagccatatc tttaaaagct cttgtaggcc catgccaaag ctcgttaata taggtttttt
     1861 cagagatttt ttgcaaagaa ataggtgtat ttttatcatc aaagctttcg taacttttca
     1921 aagccttttt aaaaagctct tcttcgccaa aaccaaaact ttctataagc tttaaagcaa
     1981 aatctttata agacaaattg gcatattttt ctccttcaaa aataggcaaa tttaaaggtg
     2041 agtaaagccc tccttctgga gcgtttgggt taatcaaagc ttccttaaaa cttgatacat
     2101 tatttacatt tctactctcg accaatttca ctgttcaaac tccttgatat aagtttttat
     2161 tttttctctt aatgaatctt ttaattctat atttaattct ataatttgac atttaaaacc
     2221 aaaatcttta actttaacaa aatccttaaa agtaagcatt agtgtatcgc aattatgttt
     2281 ttttagcaaa ttttctaatt cttctttttt aaactcataa tgatctttaa aaaaataaca
     2341 agcccttgcc ttgataaaat gctcatacaa tctaaaaggt ttagcaatag cagttaccaa
     2401 aacagccttt ggattttctt ttacaaaaga ataacgcaca aaatccctgc cttctaatgc
     2461 aataaaatca gccctttttt cataaaattt cggcaaacga taagctccac ttggtaaggt
     2521 aaaattaaaa taaggtttga ttttactttc aagtaaaata tcaaattttt taatatgaaa
     2581 tttagaaaaa gcatcatcaa gcacaacgat tttagctccc aattcaaaag ctttttcaat
     2641 accttttact ctatcttcgc tcacaatcac acctttgata ttttcttcaa aagcatactc
     2701 catagcttca tcgccacttt gtgttaaggt gcataaaatt tcattttgat ttttaacaac
     2761 aaacaaacct ttagactttc ttttatagcc cctaagtact ataaaaacac catcaaattc
     2821 ccttgctata gctttacaaa gcggggtttt tccattacct ccaaaactta aattaccaac
     2881 gctaataaca ggctttttaa aaactatttt tttacgaaaa aaagtattta aaatcgcaaa
     2941 aaaagcataa agcacactta aaggtaaaag tataaaagca aggcattttt gccaaaaatt
     3001 gggcttaaaa aaataattat caagccaaag ttcataattt ttttcttcat tcattgttta
     3061 aatttccaaa atttcaggca tttttccctt aaaagcattt ttttgcatgc gattttttaa
     3121 catagcaatc aaagaaggat caagtgttct taaaagtttt tcatcattag tttctaaagc
     3181 ttttaaacct tcatcgattt ttgtataaga aaaacctaaa tccgcctcat cactttgatt
     3241 ttcccaaaga tccgcacttg gagctttttt gatgaaattt tcatgcaagt taaggtattt
     3301 tgctaaggca taaatttcac ttttataaag cgatcctata ggattaaaag cacaagctaa
     3361 atccccataa atcgtaccat aacctaaaag caattcgctt ttattagaag tgcctatgac
     3421 taaagaattt ttcaaagcag aataatcata aagcaaactc attctaatac gcgctgcaaa
     3481 atttcccaaa gatactagag tggtattttc actttgcttt ataaaagcat ctaaaatgct
     3541 ttgaatttct atgattttat attcaagatt taaatccgca caaagcctta aagcatcttc
     3601 aagattggct ttgtttgaaa tttgagttgg cattaaaaga gcaaaaacat tctcttttaa
     3661 agctctttta caaagcgttg ctactaaagc agaatcaatc ccgccactaa gccccaaaac
     3721 cacaccttga ctttgagaat ttttcacttt ttcttgtata aaatcacaca ttttttccgt
     3781 aatcttttgc caatccataa agcttgcctt ttaaaaattt aatgtataat tatatttatt
     3841 taaggcaaat tttttattaa agaggcaaaa aatgcaaatt atcaaacaag cttgtggagt
     3901 ttatgaaact aattgctata ttttatttac cccaaagggt gaatttatca ttgatccagg
     3961 aactgatgca cttttattta tcaaaaaaca tgtaaaaaat cctttggcga ttttaaatac
     4021 tcacgggcat tatgatcata tttgggataa tgccaaggtt aaaaaagaat acaacatccc
     4081 tatttatatt cataaaaatg atgcttttat gctacatgat gattttaatc aaggctatga
     4141 ttctagcgat gcggattttt tagtagataa tgaagatatt ttaaatattt gcggagttga
     4201 ttttaaattt cactttttac caggacacac accaggttgc actatgatag aaattgtagg
     4261 taaaaatatc atgtttagtg gagatttttt attttataga agcataggaa gatgggattt
     4321 tccttattca gatgcaaatt taatgaaaca aagcttagaa aaagttatga cttacaaaga
     4381 agattttaaa cttttaccag gacatggaca agagactact ttaaaagaag agcaagtcca
     4441 tctaccctct tggcttagat acttttaagg tatattaaaa tggaattaga tcaaatttta
     4501 ttatatgctt ttattttttt aaatcttttt gccctttttg gtttattttt aggaaataaa
     4561 aagaaaaatc aatttaacga taaaaaattt tataaaatct gcccatgtaa aaaaatggca
     4621 gaaaatggat ctttaagtac gatttgtatt tattcagctg tgggaggatt tttttacagc
     4681 gtattatcta taggttttgt aggttttggt aattggactt taaattttat ttttttactt
     4741 gcattattaa gtgttttttt agggtggaaa ttaaaacttg attgaaaaat atttttaaga
     4801 aaaatccatt gatttttctt aatttttatt taaaagttgt accaccatca acgatgaaag
     4861 tatgtcctgt aacccaactt gccttacttg aacaaagaaa aagacatgct ccagccaaat
     4921 cttcaggctg ccccatgcga tttaaagggc ttaaatttat agtagcctgt tttacttctt
     4981 cataatttgt aaaagctctt aaagcatcag tttcaatagg cccaccactt acgacattta
     5041 cacggatatt tttttctcca agttcagtag ccgcatatct tgccatagct tctacagcgg
     5101 cttttgctgt accgtgacct gaataatttt ctatatacac taaatttcct gtagatgaga
     5161 tagaaataat gcttccaccc cctacttttt ccatcctttt agctgcttct tgtgcgccca
     5221 caacaaaagc atttactgtg gctgtaaaaa tgttattaat tccctttggt tttaacttca
     5281 taaatttggt atagccacct acaaccgcac gtcctgaaat gatagcattt gagataaaat
     5341 aatccactct atcaaaatcc acatcaattt tttcaaaaag ttctttatag gtttcaggtt
     5401 ctaagatatt aaattcataa gctctagctt tgattttata atttttctcc aaatcttgaa
     5461 ccatttcatc agcaatttgc gcattagaat tataagtaaa agctatattt gcacccactt
     5521 tagcaaattc ataaactata gctttgccta tcccgcgagt tccaccgcta atcactaaag
     5581 tttttccttg aaattctgta ttcattaaaa tcctttgatc ttatattttt tcatcacttc
     5641 ttcaatttta gcaaaatttt ccttacttgg agaacaaaga ggaagtctaa attccaaact
     5701 ttctatcaat ccagctaaat acatagccgt tttaatagga ataggattac tttcgcaaaa
     5761 taaaatttta ttgatattat aaagctcatc attgattttt ttagcttctt tataattttc
     5821 atctaaagca aaatgagtta aagcgctaat catatcgggt aataaatttg aagttactga
     5881 aatcactccc tttccaccat ttgaaagtat aggataattg atcgcatctt cccctgaaat
     5941 aagcatcatt ctaggttcgt gtgcaagcaa atccacacac ttatcgatat ttccactcgc
     6001 ttcttttact ccataaatat tttcacaatc tctaaaaagc ttgataatag tatccgttga
     6061 aatttcacaa cctgttcttc ctggaacatt atataaaagc acaggaatat ctacactttg
     6121 cgcaatagcc ttataatgct cgtaaagtcc ttgttgcgta ggtttattat aatacggtgc
     6181 cacacttaaa atcccatcag caccatgctc tttagcaaat ttagccaaac ccactgcctc
     6241 atgagttgca ttacttcccg cacctgctaa aaccttaact ttagttcctt tacaagtctc
     6301 aacggctatt tctatgcaag ttctatgttc ttcatgggtt aaagttgcac tttctcctgt
     6361 tgttcctact ggaactactg catcgatgcc attttctatt tgtcttttaa tcaatcttgc
     6421 ataactttgc tcatcaactt ttccattttt aaatggtgta ataagagccg tcatcgcccc
     6481 aatgataata tttttatcca tttgaatcct ttcttagaat taccgtagtt gaattttctt
     6541 gaataaaata ttttttagca caagaaatca aatcttttaa ttccaaattt tgtatatctt
     6601 tctcataatt taacaaagga ttgatatctc ctcttgctag atatgaacca taaatatttg
     6661 ccactgcact agcattgtta agtgagaaaa taaaatcact tttgacatta tttttcactc
     6721 tttgcaaatc tttttgagaa attttaccca ttttaagttt atcaatgatt tttaaaagct
     6781 ctttttctac tttttctgca ttaacattgg ggttacaatt acaaataaaa ataaataaat
     6841 tttcatctat acaatcatta acataagcat aataatcatt gattaaattt aatttatcaa
     6901 tcaaaatttc actcattaaa gaacttttcc cacttcctaa aagctcggat aaagcattta
     6961 aagcaggtat atctttgtgc ttgaaatttg gaattttata agcaagggct aatagttcag
     7021 tatctgagtt tttatgtaaa tatattcttt ttactccatc ttgcttaggc tcttttgtgt
     7081 gaattttagg tatagtctta gtatttttaa tcttttcaaa atgttttttt gaaagctcaa
     7141 aaacttcctt actttctata tcgccactta caagtaaaat cgcattttta ggttgataat
     7201 aaatactgtg aaattcttta atatcttcaa tactccaatt ttctatatcc ttaaaaaaac
     7261 ctataggagt ccaatgataa ggatgataca taaatgcatg attaaaaagc ctaaaataaa
     7321 gatatcctaa agggttatta tctgttctcc atctacgctc ttctaaaacc actgctcttt
     7381 caggctgaaa ttcttcatct tttaaattta aattcgccat aagttctgca aaaagctcta
     7441 aagctttatc taaatttttc ttcgcacatt taatataata atgagtatag tcaaaacctg
     7501 tgcttgcatt atccacacca ccaaaaccct taacaatctc atcaaattcg ccagctttta
     7561 aatttttagt acttttaaaa tttaaatgtt ctaacatatg agctatgcca ctttttccca
     7621 tgatctcatt tcttgaaccc actttataaa aaatatcaac gctaatcaca tcgctatttt
     7681 tatttacagg caaagcataa acttcaagct tgttttttaa ttgaattttt tcataagcaa
     7741 tcattttaaa tttaccccaa cagcttcgct aatgtgtaaa aaaccatctt ttcttaaaag
     7801 ctctataaga ttttgattga tattttttac caaagaagga cctttaaaaa tcaaagctgt
     7861 ataaacttgc accaaattag ccccattttt aatacgctca taagcaatat cagcactatc
     7921 aatccctcca cttgcaataa gcaaggtttt gccaaaaaga attttagtta cttctttgaa
     7981 aaaaatacca cttttttccg taatcagtct tccactaata ccaccaaaag tacgattatt
     8041 atctaataaa ctataatcaa cactagtatt ggctaatata aacccatctg cacctttttt
     8101 aatggcattt tcacataaat ttaaagcatc atctattttc atatcaggag caatttttat
     8161 caaaataggc ttagaagtga tttttttggc ttcttcaagc aaggtattta aaaaatcatc
     8221 attttgcaac tctcttaaat ttttagtatt aggagatgag atattaacga taaaataatc
     8281 acacaaatcc ttaaaatctc taaacaaagt aaaataatcc tccaaggctt tatcatttgg
     8341 agtgatttta tttttcccta tatttacccc taaaggcaaa acaaaaggat aggtttttgc
     8401 aagtcttaaa gcaatctttt cagcaccttc gttgttaaaa cccatagcat tttgtatact
     8461 ttcttgtttt acaagtctaa atagacgtgg cttttcattg ccttcttgag gttttggagt
     8521 aaaagttccc acttctaaaa agccaaatcc taaagcactc aaaggtctta tcatagtggc
     8581 atttttatca aagcctcctg ctaaacctac aggattatta aaatcaagtc caagtaaatt
     8641 ttgccttaaa ctctcatcat caactatata tttgtgtgct aaaaaactta aagctcctgg
     8701 aaaactggca cttaaagccc ttaagctata ttcaaccaaa gcatgtgcat gctcagggtt
     8761 taacttaaaa agtaaaagtt ttatcatttc ataagccatt ttttaatcct ttttgaaatt
     8821 ctaactaaaa ttaactaaag ctgggctttg ttttttcttt gcttttaaat ttttgataca
     8881 aagaacaagt ttgcaaaagc tcttcatctt tacctattgc caatacctta cccttatcca
     8941 atactactat tttatccgca ttttctatag tgcttaaacg atgtgcaacc actaaaatca
     9001 atctatcttg ttttaaattt tctatagttt taactattgc tttttcactt tcattatcca
     9061 aagctgaagt tgcttcatca aaaataagca catcaggatt tttatataaa gctctagcga
     9121 ttgctattct ttgtttttgc cctccactta agttcttacc atgttctttc acttcagccc
     9181 aaatcccgcc catttcttta acaaattcat aagcattggc caattttaaa gcttggatga
     9241 ctttttcttc ttctaactct tcgctataag caatatttgc agcaaaacta tcattaaaaa
     9301 gataaatatt ttgcgttaca agtcctattt tagcatgtaa gctttctatg gtaaaagtgc
     9361 taatatcttc ttgattgagt aaaattttac ctttttgctt ttcataaaaa tacatcaaaa
     9421 gattaataat agaagattta ccacccccac ttgtccctac aagagcaagc atttgccctt
     9481 taacaaaatc aaaatttacg ccttttaaaa cacttttatg cgggttttca taagcaaatt
     9541 caacattttc aaagctaatt ttttcaatgt tttttaattc tttgcttcca cctttaattt
     9601 gaggttctaa atccaataaa taaaaagttc tttcacttgc cgcaacagca ccttgaagtt
     9661 ttccatataa agacgaaaga cgctttaaag gagtatatat cgcaaaaagt gccgaaacaa
     9721 aactgataaa acttcccaca ctcatagaac cattgataac ctctctaccc cctacaataa
     9781 tcaccacagc aaccccaaca gaacccatca tatccattaa aggacttgta agtgcatcaa
     9841 tacgtgcgga ttttaggttt aatttacata aagtatcatt atgcttagca aatttatcac
     9901 tttctttttt ttcattatca ttagctttga tcaattcaat atttgaaaaa atttcaccca
     9961 aataagaaag taaatccgaa tttgtttctt gtatatttct tgcatatttt ttaagttttt
    10021 tagcaaacca taccaaagga aaaatagcta aaggcaaaat cactaaagca aaaaaagcca
    10081 aagtaggact ttgatacaag actaccgcaa gcagtcctat agcagttaaa agctctctaa
    10141 aaaaatcagg aataatgttt gatactatgc tttgaagtgc attaatatca ttagtacaac
    10201 gacttacaag ctctccgctt ctatagcgtt taaaaaaatc catatccaag cgtaaaacat
    10261 tttttaaaac cctagcacgc aatactctta acatatctgt tcctataaag gaaacataaa
    10321 aactttgtaa ataagttcca agatttttaa aaaaatacat caatactagc aaaaaaggta
    10381 ctgtataaag taaagcttca tttttttcaa cgaaaatata atttaaaata ggctctaaag
    10441 cataaaaact tccagcagtt cctccgcttg ctaaaatcat accaaaaata gctatagcaa
    10501 attgtttcca atatctttta taaaagggct taaagcgtat taaaacctct tttaaattca
    10561 tctcattatg catttatttt ctcccaaatt gttccatttg gagtatctaa aagagtgatt
    10621 tttttactat ttaattgctc tcttattgca tcagctgtgt taaaatcttt gtttttctta
    10681 gcctcagttc tttctaaaat taacttttca atctcttctc gttcttcttt gcttacaccc
    10741 cattgaaaat ataaagttgc atccataaaa ccaaagccaa aaattttagc tagctcactt
    10801 aaagcttctt tgatattttg ttttaaaatt ttatttttgc tttctttatc caactctaaa
    10861 tttgcactac tgataaaatc atccaaaaga gctaaggctt tagaaacatt taaatcatca
    10921 tttaaaatct ctaaaatttg cttagcaatt tcgcttttta ttccaatatc atttaaaaca
    10981 tcaaaatcag aaatttcacc taaatccaat ctttttttaa ggcgataaaa tttatctaaa
    11041 cgttttttag cattttctaa atccgataaa gaataattaa aatgagatct ataatgagaa
    11101 ctcaaaagat aaaatcttaa agcctcgccc ataaattctt ttaaagcatc ttttataaaa
    11161 aaactattat ttaaactttt actcattttt tcgccatcga tttttacaaa accattgtga
    11221 agccaaatat ttgctaattt tctcttacat ccacaacgac attgcgcagc ttcattttca
    11281 tgatgaggaa aaagcaaatc tatccctcca gcatgtatat caagggtatt ttcaaaaata
    11341 gaatcaatca tagcaacaca ttcagtatgc caacctggac gccctttgcc aaattcactt
    11401 tcgtaaaaat tttcatcaaa tttccaaagc acaaaatcgc tttcatttct tttttgcact
    11461 tcattactta gacgagagat attttcttct aaattgcgat ttgataggct taaatatttt
    11521 tcatctttac ttgtatcaaa ataaattcca tcttctagag tataaacaaa cccatcctta
    11581 gcaagctttt taatcaaatc aagcatagct gttatataat gcgttgcacg aggtttaaaa
    11641 tcaggatcta atacatttaa aaccctcata tcctcttcat aacttttgat ataaaattcc
    11701 gtaatttcct ctaaagtttg accactttga gccatttttt tcaaaatctt atcatcaata
    11761 tctgtataat ttctagcaaa ttttacccta ttgccttgag caagtaaaac cctacgcaaa
    11821 agatcaaaac aaacactact tcttgcatgt cctaaatgtg catcatcata aaccgtaggt
    11881 ccgcataaat aaatactaat atctttttta tcaagtttta ttttctcttt tgttacacta
    11941 tctaataatc tcattaaaaa actcctttaa aacttgtaaa aattcctata aaaaaactta
    12001 aaatataagg tttaatcaaa ataagtaaga tcgtaaaaac aatcaaagca actataacca
    12061 ataagcaaat tttaatagat attaaagcaa aaaatttctt aaaaccaaat tctttgatat
    12121 tagctccaag caaataaaaa gcactaatag agcttgaaag tgctactgca ataaccttta
    12181 aactttcatc tttaatcaaa aatataaaag ccatagaaca taaagcactg ataattaaag
    12241 attttaccgc gatccaagct gctgtttttt gtttaaattt tgcataaagc cacaaagaaa
    12301 aaagcttttg caaaccaaaa ggtaaaagcc ctataagata agcaatcaaa acataagccg
    12361 taatcacact atcttcgtga gtgaaatttc ctctttcaaa taaaagcttt gaaatttcca
    12421 aagcaaacac agaacctaca atactagaag caataagcaa aatgcttaaa agcgctaatg
    12481 ctctttgcat aaattttaag gctaaatttt cttgatcact ttttaaatgt tttaaaattt
    12541 ttggaaaaga aacttgagtt aaagcaatag caaaaagtgc cagggggagt tggaagacac
    12601 gatttgcata ataaagataa gaaatactcc cgctcattaa aaaactagct atagttgtat
    12661 caagcaatga gctaaattga gtcgcagaag aacctaaaac tccatgaaaa aaattgccat
    12721 aaaaaccttg taatttagcc ttggtttttt taaattttat acttaaagtc atagcacgta
    12781 ttacaggatt gttttttaaa acaagcaaat gtaaaataag ctgtgccacc ccacttaaaa
    12841 ccgttgcata agaaaaataa taaagtgtat tttgcggtgc atttttatcc acaaaaaagg
    12901 cagctataac aatacttaag ttaaataatg ccgcagaaaa agaggtaatg aaaaattttt
    12961 gtctataatt taaaatagct cctaaaaaag taactaaaaa aataaaaaac aaataccaaa
    13021 aattaatcgc caccaaagga gccgctaaag ctatagtatc tgcgttaaac ccaaaagcaa
    13081 aaagcttagt aaaaaaagag gaaaaaaaac ttaccaaaag acaaaataaa aaaactataa
    13141 ggctaaattg catcattaca ctaacgcaaa aagctccctt ttttttcgct tttacaaaat
    13201 taggcaaaaa actttgtcca aaagcccctt ctgcaaaaat tcttctaaaa aaagcaggca
    13261 tttttaaagc cacaaaaaaa atatcactat aaagccctgc tcctaaaaaa agcgctatta
    13321 aaacatctct agcaagccct aaaattcttg aaaat
//
LOCUS       DARBAR010000040        13263 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.040, whole genome shotgun sequence.
ACCESSION   DARBAR010000040 DARBAR010000000
VERSION     DARBAR010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13263)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13263)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13263
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.040"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            77..1450
                     /locus_tag="SB815_000861"
     CDS             77..1450
                     /locus_tag="SB815_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG0906614.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHVKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKVTPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEKLIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            1450..2334
                     /locus_tag="SB815_000862"
     CDS             1450..2334
                     /locus_tag="SB815_000862"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEG0906615.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            2373..2774
                     /locus_tag="SB815_000863"
     CDS             2373..2774
                     /locus_tag="SB815_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HEG0906616.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            2783..3661
                     /locus_tag="SB815_000864"
     CDS             2783..3661
                     /locus_tag="SB815_000864"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEG0906617.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            3686..3943
                     /locus_tag="SB815_000865"
     CDS             3686..3943
                     /locus_tag="SB815_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEG0906618.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            3930..6545
                     /gene="infB"
                     /locus_tag="SB815_000866"
     CDS             3930..6545
                     /gene="infB"
                     /locus_tag="SB815_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEG0906619.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKTEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSIKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPSK
                     KIEKKEVEEVSSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIIPVEWGGS
                     YEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERS
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCM
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            6542..6904
                     /gene="rbfA"
                     /locus_tag="SB815_000867"
     CDS             6542..6904
                     /gene="rbfA"
                     /locus_tag="SB815_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEG0906620.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            6894..7316
                     /gene="rimP"
                     /locus_tag="SB815_000868"
     CDS             6894..7316
                     /gene="rimP"
                     /locus_tag="SB815_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEG0906621.1"
                     /translation="MNLEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFE
                     AKIIAVDDENITLENLENKEKTTINFNDIKKARTFVEW"
     gene            7578..9376
                     /locus_tag="SB815_000869"
                     /pseudo
     CDS             7578..9376
                     /locus_tag="SB815_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881036.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
     gene            9369..10699
                     /locus_tag="SB815_000870"
                     /pseudo
     CDS             9369..10699
                     /locus_tag="SB815_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
     gene            complement(10688..11491)
                     /locus_tag="SB815_000871"
     CDS             complement(10688..11491)
                     /locus_tag="SB815_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEG0906622.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKHYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKRLGFI
                     MILASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLMHLIGKFLKR"
     gene            complement(11484..12338)
                     /locus_tag="SB815_000872"
     CDS             complement(11484..12338)
                     /locus_tag="SB815_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEG0906623.1"
                     /translation="MLFFEISNLNYAYDNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQRKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEENCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            complement(12351..13241)
                     /locus_tag="SB815_000873"
     CDS             complement(12351..13241)
                     /locus_tag="SB815_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEG0906624.1"
                     /translation="MKKILLFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     VKKIAANTLDVNVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FSKLQIVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTL
                     IQKYPQNENLYKENLDKFLAELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLT
                     QIPVEILGKEPKSKDLQKLITLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDH
                     LSYDWENELLKTADAFSHNL"
BASE COUNT         5089 a         1579 c         2357 g         4238 t
ORIGIN      
        1 tgctagatat ttactgaaaa tataatagaa tttatactaa aaacaacaaa aacattgaaa
       61 atttttaagg aaggttatgg caaaaagaaa aggcaaaact tatttatctg ttttaatttt
      121 agttttaata gcaattttga ttttttttat ttcaagatta agtatttttg aaaaaaatcc
      181 tcctcaaatt ttaatgccag atgttgtata tactgatctt aaaaaaccta ttttagtaca
      241 tgttaaagat gatgaaagtt ctatcaaaaa tgtacaaatt atattgcata aagacgacaa
      301 tactagtgca atggttatag cagatgaaaa gatttctaat ttaaaagata ttaccttaca
      361 agttgctttg ccaaaatttg gttacaaaga aaatgtaaaa tcttttgttt tggaggtgat
      421 agctaaagat tctagttttt ggaatttttt tagtggcaat gaagcaagaa aacaaattgc
      481 ggtattagta gataatacgg ctccaaaaat caatatcata agcaattctt accaaatcga
      541 gcaaggcggt gctggggcag ttgtttttaa ggctgatgat gctaatttag ataaggtgta
      601 tatagaaaca aataaaggta aaatctttaa agtcacacct tatgtaaaag aaggatatta
      661 tgcggctttg attgcttggg atgcaagaga tgaggaattt cgcgcatttg ttatcgctac
      721 ggataaagcg ggcaatattt caaaagaacg tataaggtat tattttgtta atcgtaaata
      781 tcgtgtttca aatatcaatc taacggataa atttttagat ggaaagattg agaatttagc
      841 aaatcagtac gctccaaaag ataataatct caatcgttat gaaaaattta agtttgtcaa
      901 tgaaacttta agaaatagca atgaaaaact tatccatgaa atcacttcaa aagtacctga
      961 ggaaaaaatt gataattttg atttgaattt atttttacct cttaaaaatg gtatgaaagt
     1021 agcggatttt gctgatcata ggtattattc ttataatggg caatttgtga gtgattctta
     1081 tcatatgggg cttgatctag caagcgtagc acaagctcct atcataagta ataatgcagg
     1141 caaggttgtt tttgctgctg aaaatggaat ttatggttta aatttaattg tttatcatgg
     1201 tttcggagta tatagtcttt atggacactg ttcttctaaa aatgttgatt tagatgaaat
     1261 gattaataaa caaagcatta taggcaaaac aggaacaagt ggtttagcct taggcgatca
     1321 tttgcatttt ggagttttgg ttcaaggggt tgaaacacgt cctgaacaat ggcaagataa
     1381 aaaatggata gaaaataata tttacaatgt tttaaatgat ggtaaaaaga taattttagg
     1441 aaaaaattaa tgaaacaatt aactttagca aaaactgtca aaggcgtagg tataggactt
     1501 cataagggtg aacccataga aattacttta gagcctttag aagcaaatag tggtatagta
     1561 ttttttagaa gcgatcttaa tgcaagctat aaggcaagtc ctgaaaatgt gatcaatact
     1621 caaatggcaa ctgttttagg agatgaaaga gggtttattt ctacaataga gcatttaatg
     1681 agtgcgatta atgcttatgg aatcgataat gtacgcattg ttttaaatgc aaacgaagct
     1741 cctgttatgg atggatcaag tattagtttt tgcatgatgc ttgatgaagc aggggtaaaa
     1801 gaacttgatg cgcctaaaaa aattatggta attaaaaagc ctatagaagt aagagatggt
     1861 aataaatttg tgcgtttaac tcctactaaa gaaccccgta ttaattacac aattaaattt
     1921 gacaatgctg ttataggtga acaaagttac aattttgaat tcagcaaaaa aaattatata
     1981 gaaaacatag caagggctag aacttttggt tttttaaaag atgttcaagc tcttaggagt
     2041 atgaatttag cactaggtgg aagtttagaa aatactatag tggtagatga aaatcgtatt
     2101 ttaaatcctg aaggtttgcg tttcaaagat gaatttgtaa gacataaaat tttagatgca
     2161 attggagatt taaccttgct tggatatcgt gtttttggag attatacttc atatgctggg
     2221 agtcatcatt taaatcattt acttactaaa gaagttttaa aagataaaga tgcttatgaa
     2281 attgtaagcc ttgaaaaaac aacccaaaaa gcttatgaaa aggtatttgc ataaaaacct
     2341 ctcttttgct taatgcttta tctaagcctt taatgatcgg aatttatcaa gatgataaac
     2401 ttataaaaac ttataaaagt gaagaaaaag caagcgaatt tttaccaaaa attttagatg
     2461 aattgcttaa agaatatgat tttacaagtt taatctatgc taatggtcca ggttcttata
     2521 tggggattaa aatttcttat gtaagtttga gtactttaag tatagtaaaa aatattcctt
     2581 tatttgcggt aagtgctttt gaattaaatg gctataaacc cataagtgca aataaaaatt
     2641 tttgttttgt atataaggaa ggtgaaattt gtttagagca aaatatccca gcagagtttt
     2701 ttttaccaaa aaatttacaa gagcttaaac taaataatga taatcttccc ttttattttt
     2761 tagatgcaat ttaggatgaa atttgaaaat tttagttccc gctacgagtg cgaatttagg
     2821 gccaggtttt gattgtttag gacttagttt aaagcttttt aatgaaactc aaatccaaaa
     2881 atcaggtgtt tttagcatta gtattggagg cgagggaagt gataatattt ttcttaaaaa
     2941 aaacaatata tttgtaaata ttttttatga aatttatgaa aaactaagcg gaaaaaaaga
     3001 taattttcgt tttatttttc aaaataacat tcctctttca agaggattag gaagctcttc
     3061 agctgtgatt gttggagcta ttgccagtgc ttattatatg agtggattta aggtagaaaa
     3121 agaacgtatt ttagatgaag ctttaattta tgaaaaccat ccagataata tcgctccagc
     3181 tactcttggt ggttttgtgt gttctttggt tgaaaaaaat aaagtttata gtatcaaaaa
     3241 agagattgat aaagatttag ctgctgtggt tgtgatccca aatttggcaa tgagcacgga
     3301 acaatcacgc caagctttgg ccaaaaattt aagttttaat gatgcggttt tcaatctttc
     3361 tcatgcttca tttttaaccg cttgtttttt ggagaaaaaa tatgaatttt taaaatttgc
     3421 aagtcaagat aagctccatg aaatcaatcg tatgaaaaac ttacccgaac tttttgaagt
     3481 gcaaaaattt gccttagaaa ataaagcttt aatgagcaca ctttcaggtt cgggatcgag
     3541 ctttttttct ttagctttta aagatgatgc tttagctttg gcaaagaaaa tacaaacaaa
     3601 atttaaagat tttcgtgtgc aatatttaga atttgatgat aatggctttg aaatttgcta
     3661 aaaaatataa aaaaaagata taattttgaa aaaacatata ccaattagaa tgtgcatagt
     3721 gtgtaaaaac cgctttgagc aaaatatgtt atttagattt aaagttgttt taggagatat
     3781 tgtgcctaaa gcagaacatg gaagaagcgg atatttatgt caaaattgta ttgagagaga
     3841 agataaagtc ttacaaaaag cattttctaa aatatgtaaa aatttaaata ctaaaattac
     3901 tcagcaagga cttaaggaga tatttttaaa tggcaaagat tagaattcat gaaatcgcaa
     3961 aagaattagg ttatgatagt aaggaaatta ttgaaaaggc aaatgaatta ggacttggaa
     4021 ttaaaacagc atcaaatgct gtagaacctg agattgcggc agctatttat gagtatatac
     4081 aaacaagaga aattccagaa gcttttaaga aaaatatcaa aactcctacg gcaaaaaagc
     4141 ctaaaaaaga aaatataaaa gaacaagaaa agctaaatga atctgaaaaa aaagaaccta
     4201 aaaaagaaga aaagcttaaa caagaagtta aaaaagaaga attaaaaact gaaaaagaaa
     4261 atgcaaaaga ggaagaaaaa caagaaatta ttgatgctca taagccacaa agccttgcta
     4321 gtgcaacttt agccaaaaga cgcggacttg ttattgttaa aaagaaaaaa gacgaagaag
     4381 aaattcaagt taaaaaagaa gaagtaaaaa attcaaatga tatatctatc aataatgaag
     4441 agcgcttaag tttaaaaact atgttttcaa atgctgatga gagtttaaag aaaaagaaaa
     4501 aagaaaaaaa atcttttgtt gcgagtaaaa aagaaagtac cgaaaaaatg aattttttag
     4561 atgaacatga ttttggtgat atttctttag atgatgaaga tgaggtagta ttacctgatt
     4621 ttagtataaa agaacaagaa aaaccacaaa atatcaataa aaaacaacct aattttataa
     4681 gacaagctgt tggaaattct gcgggttttg ggcttgaagg tggaattcaa agaagaagtc
     4741 gtaaaaaacc atctaaaaag attgaaaaaa aggaagtaga agaagtaagt agcgttgcta
     4801 tttctaaaga aattcgtgtg tatgaattcg ctgataagat aggaaaaagc actagtgaag
     4861 tgatttcaaa acttttcatg cttggaatga tgacaacaaa aaatgatttc ttagatgaag
     4921 atgcgattga aattttggct gctgaatttg gtatagagat caatatcatt aacgaggctg
     4981 atgagtttga ttatgtaaaa gactatgaag aagagactga tgaaaaagat ttagtgacta
     5041 gagcacctgt gattaccatc atggggcatg ttgatcatgg taaaacttct ttgttagatt
     5101 atattagaaa atcacgtgtt gcaagtggtg aagcaggggg tattactcag cacgtgggtg
     5161 cttatatggt agaaaaaaat ggacgtaaaa ttacttttat tgatactcca ggtcacgaag
     5221 cttttactgc tatgcgtgca aggggtgcaa gtatcactga tattgtaatc atcgttgtag
     5281 ccgcagatga tggggtaaaa ccacaaacta aagaagcgat aaatcatgct aaagcagcag
     5341 gtgtgcctat tattattgct attaataaaa tggataaaga agcagcaaat cccgatatgg
     5401 taaaaactca actcgcagaa atggaaatca taccagtaga atggggcgga tcttatgaat
     5461 ttgtaggagt ttcggctaaa acaggaatgg ggattgaaga tttgcttgaa atcgtgcttt
     5521 tacaagctga tattttagaa cttaaagcca atccaaaaag ttttgctaaa gcaagcatta
     5581 tagaaagttc tgtgcaaaaa gggcgtggtg cggtggctac tatcatcgtg caaaatggaa
     5641 cacttactgt aggaagtacc gtggttgcag gcgaggctta tggaaaagtg cgtgcgatga
     5701 gcgatgatca aggtaaagcc ttaaaagaaa ttaaaccagg cgaatgtggg gttatcgtag
     5761 ggcttagtga agtagcagat gcaggtgaaa ttttaatcgc agtaaaaacc gataaagaag
     5821 caagagaata cgctaataaa cgccacgaat acaatcgcca aaaagaactt agcaaatcca
     5881 ctaaagttag cattgatgag cttggagcta agatcaaaga aggtaatcta aaagctttgc
     5941 ctgttatttt aaaagctgat gtgcaaggat ctttagaagc cttaaaggca agtttagaaa
     6001 aacttagaaa tgatgagatt aaagtgaata tcattcatag tggagtagga ggaatcacgc
     6061 aaagtgatat agagcttgca agtgcgagtg aaaactctat agtactaggt tttaacatac
     6121 gcccaacagg ggaagttaaa gagcgttcta aagataaagg cgtagaaatt aaaacttata
     6181 atgtgattta taatctttta gatgatgtaa aagccttgct tggtggtatg atgagtccga
     6241 ttatttctga agagcaatta ggacaagcag agattagaca agtgatcaat gtgccaaaaa
     6301 tcggacaaat tgcaggttgt atggtaaccg aaggggtgat taaccgtggg gctaaaattc
     6361 gccttatccg tgatggagtt gtggtttatg agggaaatgt aagctcactt aaacgcttta
     6421 aagatgatgc taaagaagtg gcaaaaggct atgaatgtgg cgtaggtata gaagggtgcg
     6481 atgatatgag agtgggtgat tatatagaaa gctataaaga agtagaggaa caagcaagtc
     6541 tatgaaccca agtgagatta aaaaactacg cactgaaagt atcttaaaag agctgatccc
     6601 tgaagcttta gcaaatttag atgatgaaaa tttgaaaaat ttgtgtgtag tggatgtaga
     6661 gtgtaaaaaa ggcagatatg atgcttttgt gtatcttgat aagatgtttt ttaatgttca
     6721 tgagcaagaa aaaattttat cttctttaaa aaaggcaagt agagctttgc aaaattactg
     6781 catgagtgag cagggttggt ataggtgtcc gaattttcat tttaaatttg atgataggct
     6841 tgagtatcaa aaccatatgg atgcactttt tgaaaaaata aaaaaggata aaaatgaatc
     6901 ttgaagccct ttgcaaagaa gcagagctta gcttttatga tgatgagcta gtaagtgaaa
     6961 atggcagaaa aatttataga atttatgtgc aaaaagaagg tggggtaaat cttgatgatt
     7021 gtgcaaggct tagtgaaatt ttatcgccta tttttgatgt agagccacct gtaaatgggg
     7081 agtatttttt agaagtatct tcaccaggac ttgaaagaaa acttagcaag atagaacact
     7141 ttgctaaaag tataggtgaa cttgtgaaga tcacaaccaa tgaaaaagaa aaattcgaag
     7201 caaaaatcat tgctgtagat gatgaaaata tcactttaga aaatttagaa aataaagaaa
     7261 aaactactat aaattttaat gatataaaaa aagctagaac ctttgtggag tggtaagaaa
     7321 tggaaattat ctttaatcaa gatgaaaaag ataattttat ttcagcaata aattttctta
     7381 ttcatgaagt tgaagcttgt atccaaagaa atgttttaac acaacacggt aaagtaagtg
     7441 ttaaaggaac ttctcaaaaa gatattaata tcaagctaga ttttttaaaa aaatataatt
     7501 attcttataa aattggtcta ggtaatgcag gtggattttt aaatgaggat agttggatta
     7561 tttttgttag aaatgatttg cttgcaagta atttgatcaa cggtgaaaaa ttaactgcaa
     7621 caaaaggtat ttatattttt atagcttttt caggatattt ttcagacgat aaacatatac
     7681 aattgagttt tggttttcct caaggagaca tgaatttatc gaggtgtagt gccattgatc
     7741 aaatggatag gagtggaaaa ttacggtatt ttgattttaa gtacaaagat cttgaaaaag
     7801 aaacaaatca aattgtaaaa gattttcaag atatgattaa ttattttaat atttttgaca
     7861 aaaatgattt taaattaaga gctgaatttt ctacttttat acccttaaat caaattcttt
     7921 atggacctcc gggcacagga aaaacttatc atactgtaga taaggctttg gaaatcttgg
     7981 gtgaaaattt agaaagtaga gatgagaaaa aagctaaatt tgatgagtat gtaagaaagg
     8041 gacaaatagt atttgctact tttcatcaaa gctatggata tgaagaattt gtagaaggta
     8101 taaagcctcg catagatagc aaagaatatt ctaaagaaat agaatatgaa ataaaagatg
     8161 gaatttttaa agaactttgt gaaaaagctt tatataaaaa aagaaaaatt ataaataatg
     8221 aagatatatc tattgataaa aactcaaaag tttggaaaat ttctttagga gctaatgctt
     8281 cattaagaga tgaatgtttt gaaaaaaata aaatttgtat aggttggggt gatatttcaa
     8341 agaacaaaga tgaacgtttt gggaatttag gcgtaaatga tcaaaatagt atattaagtt
     8401 ttgtagatta tatgcaaata ggtgatttag tttgtgtttt taatagttta aaaactataa
     8461 aaggtgtagg tattgttata agtgatgtta aatatagcaa tggaaaatat caaacatata
     8521 gagatgttaa atggatttta aaagatgaaa taatagatat ttatgaatta aataataata
     8581 caaatttaac acaaaaaact gtttatgaat tacaaagaat taaacctaat gatttgttag
     8641 aaaaaataaa taaattagat gatttagaaa ttatagaaga taatacaaaa aagaaattta
     8701 taatcatcat agatgaaatc aatcgtggta atgtaagtaa gatttttggt gagcttttat
     8761 aaccttgata gaacctagca aaaggataag cgcaaaagaa gagttaaaag tgactttgcc
     8821 ttatagcagt gaaaaatttg gagtgcctaa aaatgtttat atcataggca ctatgaatac
     8881 agccgataga agcataactt ctcttgatac agctttgcga agaagatttg aatttattga
     8941 gatgatgcct gatgtgagca aattatctat ggattgcgaa ggtattaatt tacaagaatt
     9001 attaaaagct ataaacactc gtatagaata tttactagat agagaaaaaa ccataggaca
     9061 cgcatttttt ataggtgttg aaaatttaaa tgatttaaaa agtatttttc aaaacaaaat
     9121 tatcccgctt ttgcaagagt atttttataa tgattatgct ttgattaatg cggttttaaa
     9181 tgataatggt atgatttttg aagataaaaa agatgataaa tatcttcaaa aaataaaaaa
     9241 tctagatagt attaatagcg agagaagtat ttataatatt gtttcatttg atgataaaat
     9301 ttgggataaa atagaaatat atcaagcaat ttataatgat gaaatagcaa ataaattaaa
     9361 aaacgaaaat gaatagcact ttttccatca tcgaacacca agctttttct aaagaagatt
     9421 taaaagaaat tttcaaagaa aaggccgaag ggttttataa agagctagaa gactttgcaa
     9481 aaaataatga aaatcttcta ggctttaaaa acaaaaatac cttaaaagct aaaaattatg
     9541 ttggcattat acagactaaa agcggggttt tggagatttt gccaaaatgc acgaatttag
     9601 atagttataa aaaagaagat agttcttcaa atcacgataa agaaaaacta agaagatgtt
     9661 atgaattaga caatatttct aaaaataatg atttttatga aaaagatttt aaatttaatc
     9721 ctaaaaatct tttgataaat atgctaaaaa ccttaaaaaa ctcccccttt aaaaaatcgc
     9781 aaatttcatc tttgcaaagt tctaaaattc ctttatttga agtgtttatt actatgtttt
     9841 tagatgaatt tgatagcgta tataaaaaag gcttgatgag atcttatcta agttgcgaag
     9901 aaaatagggc ttttttaaag ggaaaattac tatttaacga gcatatcaag caaaatttga
     9961 tacacaaaga aagatttttt acaagcaatg atgagtttgt tttagatata gcacccaatc
    10021 gtttgataaa atcaacgtta aattttttaa aatcaaaaac aagtttgaat aaatttagac
    10081 ttataaaagc catgcaaatg cttgatgagg tagaattttc taaaaattat gaaaaagatt
    10141 ttagctataa aatttcaaga cattttgatt attatgaaaa cttgcttttg tggtgtaaaa
    10201 ttttcttaaa aaatgaaagt tttatgcctt atcatggtaa aaatgaagct tttgctttgc
    10261 tttttcctat ggagaaaatt tttgaagatt atgtagctta tatgctaaaa aaagtaaatc
    10321 caactcaaga tattaaaatt caaaacaatg gaaagtatct aatctcaaaa aatgatgaaa
    10381 attgttttat gttaaagcct gatttatata taaaaaataa aatgatccta gataccaaat
    10441 ggaaaattcc aaatgatagt gaagatgaga aaaaacagag tatagcacaa agcgatttgt
    10501 atcaaatgtt tgcttatgct tgcaaattta aaatttatga tattaaactt gtatatcctt
    10561 tatgtgaaaa aactcaagat ttacaaagaa aaatcgcaga aaattttttg tttttaaagc
    10621 aagcgaacat ttgtatttta aagaacaagg gcaaaaagat ataaaagtcc aagtattttt
    10681 tgcaccttta cctttttaaa aatttgccta tcaaatgcat taaaaaacca aagcaagcta
    10741 cagctatgat acaagcaccg cttgagagat taagataata gctaagtata agtcctaaaa
    10801 cacaaaaaat catacttaaa aaacttgcca aaatcatgat aaagccaagt cttttagtaa
    10861 aattttcagc aataaagctt gggatactaa gtaaagccat aactaaaata agccctacaa
    10921 ggcgtatgga aataactatg caaaaagcca taagggcgat taaaagataa tgaaaaaaac
    10981 ttgtattgat accacgaact tttgcaaatt ccgcatcaaa gcttaatgct tcaaattgtc
    11041 tataaaataa aaagatcaaa agcaccacca cgctatcaac caaagccata agccataaat
    11101 cttgtgttcc tacagccaaa atgctcccaa aaagataagc cattaaatct gtgttataac
    11161 tagggcttaa atcgattaaa ataatcccaa cagccattcc aaaagcccat attacagcga
    11221 taatactatc acttctatgt tcatagtgtt tagctaaaaa agctactaaa aaagccaaaa
    11281 ataaagtaaa tattcccgtg cttaataaaa taggcaaaga gaaataaaaa gctataccta
    11341 taccaccaaa agccccatgt gttatacctc cagccataga aaaaaggcga tttatcatca
    11401 ccaaagtacc tatgatccca caagctatac tgactaaaat cgctcctagt aaagcgtttt
    11461 gaaaaaaggt gaaatttaaa atttcaagca ttattttcct ttgaaaattt taaacaaaaa
    11521 ttttcttttt taaattctgt ttttttcaaa tttcttcttg taaattcttg ttcgcatagt
    11581 tttttactat cgcaattttc ttcatcgcaa aaacaagtat ttaaactcat ttctacatca
    11641 caaaaatgag agtggttttc gtataaatgt tttaaaaatg aacttttttc tttttcttta
    11701 gtgttagtat gcaagaaaag ttctttgttt aaatgtgcaa ttttatcgct ataagctaat
    11761 acaaggttga tatcgtgaca aatgagtaaa attcccatgc ctttttggtg caaggagctt
    11821 agaagttcaa aaatttgtat agcagacttg ttatcaacgc ttgcggtagg ttcatctaaa
    11881 ataagcattt tgcattcact agctaaggct cttgcgataa aaacacgttg cctttgtcct
    11941 ccgcttagag aatcaatggt tttgttccaa aatttttcca ttcctacgct ttttaaagct
    12001 tgcatagctt tttctttatc ttttttgcca taaaaaccaa aaattttttt acttacaagt
    12061 cccataagaa cgatttcaag tactcttggg caaaaattag gattggctag agtgtgttga
    12121 ggaacatagc ctatttcttt tctttgaaga gctttgaaat ggatttcatt tttggatttt
    12181 aaaagtccta agataagttt tacgagtgtt gattttcctg cgccatttgg acctatgata
    12241 gagagaaagt ctttattgtc atagctaaga ttgatgtttt ttaagatgat ttcattatca
    12301 taagcgtagt ttagattaga aatttcaaaa aaaagcatca aaaaacctga ttataaatta
    12361 tgagaaaagg catcagcagt ttttaaaagc tcattttccc aatcataaga taaatgatct
    12421 attttgtaaa tttttgcatc acattcttta gcaagtgttt ttgctgcatt ttcagggaaa
    12481 ccattttgaa caaaaatgac ttttaaattt ttatctttca ttagagtgat aagtttttgc
    12541 aaatctttgc tttttggttc cttgcctaaa atttctacag gaatttgcgt aagattatag
    12601 cgttttgcaa aatatgtcca agaaggatga taaactacaa attctctatt ttttaatttt
    12661 tctaattttg aggcaatttg taaatttaaa ctatccaatt ctgctaaaaa tttatctaaa
    12721 ttttctttat ataaattttc attttgtgga tatttttgaa tcaaggtgtc ataaatattt
    12781 aaagccatag tttggactaa aataggatct agccaagtat gaggatcaaa atgctcatgt
    12841 tcgtggtgtt catgctcatg agagtgttcg tgtgtatcat gagtttgaat caaagctatg
    12901 tttttttgca tatttacaat ttgaagtttt gaaaaatttt gtttaaattt atccgtaaaa
    12961 actttttcaa attctaagcc tatagtgaaa taaatatcac ttttttcaag ttttttcata
    13021 gtacttggtt taaattcaaa attatgctca ttgctatttg ggggcaaaat aacattgaca
    13081 tctagagtat ttgcagctat ttttttaaca aaaaatgctt gaggtgctat actgacacta
    13141 actaaattgc tactagtatt ttgttcttgc tctaaatttt tagcttgtgt gaaagtataa
    13201 aatatcccta aagataaaat aaataataga atttttttca aaatatttcc ttcgatataa
    13261 att
//
LOCUS       DARBAR010000041        13081 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.041, whole genome shotgun sequence.
ACCESSION   DARBAR010000041 DARBAR010000000
VERSION     DARBAR010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13081)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13081)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13081
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.041"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            87..806
                     /locus_tag="SB815_000874"
     CDS             87..806
                     /locus_tag="SB815_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906625.1"
                     /translation="MKKYFNIFKIFTNKTNAKFGLGVCSVVLSSSVCFAAVQAASKDG
                     KIFYISEHSFKDNQVYDPQAEIFKKINGKNFYASKSKYPISNLTMIYNNPKSGNKNLS
                     KLEILTPDTSKEEIITAFSTLGTVSSDTQAVPSSFMPFIVTAYAQNTNATNNKLILEN
                     GELSSVYFCKPSIGDCGVPNNSQKGDRFKYLITAAFTDRGEGFNNQTILKENSYINNG
                     CRKYLHLALKWSSLYFRICSF"
     gene            736..2664
                     /locus_tag="SB815_000875"
     CDS             736..2664
                     /locus_tag="SB815_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906626.1"
                     /translation="MGVENIYTLPLNGVPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLNKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNF
                     YGKNYYNLYGCFATEGANFNVFDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINAKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIINNNTAFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDTQDVKSEVVNNFENFTFILPNKIKNPILTIEKLINLPANGSMEILTKNK
                     PTKGKYILIQSDVGIYDGDNGLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNV
                     NFSFEVSDDAKIIYINIL"
     gene            2676..4131
                     /locus_tag="SB815_000876"
                     /pseudo
     CDS             2676..4131
                     /locus_tag="SB815_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874703.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            4128..4292
                     /locus_tag="SB815_000877"
     CDS             4128..4292
                     /locus_tag="SB815_000877"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906627.1"
                     /translation="MSAGNYKTQAGKVIGDPGISVNNNFSNIYVYHNLENGYIDEGQN
                     FLSLCNIIMK"
     gene            4271..5197
                     /locus_tag="SB815_000878"
     CDS             4271..5197
                     /locus_tag="SB815_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906628.1"
                     /translation="MQYNNEVTGKKDFDSAVRKKFNDIKYLDNNSYAFADSFTKATDA
                     VKLSKDDFDPKLLQRILDDLMNGKYTYDFDTKTWTYTDSKGVVGKDEASEITQSLNFL
                     NAFKDTGVEQEFLKLWQGSQEQNYKNYTNLYEKWTQKKTAMDKIKTGEGYFASFKEEL
                     QKYQEALAQLDKENKNYEKIKESGLVSDETLRAIYEKLLEQKEALEKQFADLSGNEGF
                     RYKLENEILNSQGFSIEGKDVDGKVYTGNFNFKGKLASLPEKPNISIYEPDKQGGEDP
                     DKPSVLPPEIPEKVVEAPIKIQTEVDAKKRRR"
     gene            5310..6879
                     /locus_tag="SB815_000879"
                     /pseudo
     CDS             5310..6879
                     /locus_tag="SB815_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856720.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            7506..9018
                     /locus_tag="SB815_000880"
     rRNA            7506..9018
                     /locus_tag="SB815_000880"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            9121..9196
                     /locus_tag="SB815_000881"
     tRNA            9121..9196
                     /locus_tag="SB815_000881"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9154..9156,aa:Ala,seq:tgc)
     gene            9205..9281
                     /locus_tag="SB815_000882"
     tRNA            9205..9281
                     /locus_tag="SB815_000882"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9239..9241,aa:Ile,seq:gat)
     gene            9818..12724
                     /locus_tag="SB815_000883"
     rRNA            9818..12724
                     /locus_tag="SB815_000883"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            12980..>13081
                     /gene="rrf"
                     /locus_tag="SB815_000884"
     rRNA            12980..>13081
                     /gene="rrf"
                     /locus_tag="SB815_000884"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         4588 a         1931 c         2698 g         3864 t
ORIGIN      
        1 ttataatcaa ctcaggacat acgggatagt gttgcaaata atcaatttgc gataaatcaa
       61 aaggttttat tttagtaaga aatgagatga aaaaatattt taatattttt aaaattttta
      121 caaataagac aaatgcaaaa tttggcttgg gcgtttgtag tgtggtttta tcttcttcgg
      181 tttgttttgc ggcggttcag gctgcaagca aggatggaaa aattttttat atttctgaac
      241 attcttttaa ggataatcaa gtttatgatc ctcaagcaga aatttttaaa aaaattaatg
      301 gaaaaaattt ctatgcttct aagtcaaaat accctatatc aaatttaact atgatttata
      361 ataaccctaa atctggaaat aaaaatttat ccaagcttga aattttaact ccggatactt
      421 caaaagaaga gatcataaca gcttttagca ctttaggaac cgtatcttca gatactcaag
      481 ccgttcctag ttcttttatg ccttttattg taacagctta tgcgcaaaat acaaatgcaa
      541 caaataataa acttatatta gaaaatggag aattatcttc tgtgtatttt tgcaaaccaa
      601 gcatagggga ttgtggagta cctaataatt ctcaaaaagg cgatcgtttt aagtatttaa
      661 ttactgcggc gtttactgac aggggggagg gatttaacaa tcaaaccatt ttaaaagaaa
      721 actcctatat caataatggg tgtagaaaat atctacacct tgcccttaaa tggagttcct
      781 tatatttcag gatctgtagc ttttgatggt gaagctaaag acaataaatt aatcttagag
      841 tcaaatacaa aaattgacct tcataattcc cagtattttt cagatgaaga aggtaaggat
      901 atttatgatg aaagaattac tcgtttaatg ggagcttttg gcataaattc taatttacaa
      961 aacaataaag ttcttatcga ttcagccaat atcgtccttc atgggccaga tggtgagtat
     1021 acagctcgtt cgacctttga aattttaggt gctttagctg atgtaaataa tcttaaaaaa
     1081 tacaatgtaa gtaaaaattc tgtaataatt aaaaatttaa atttagattt aatggtaaat
     1141 tcgcaaaata aaataacttt ttatgatgct gttttatttg gagaaattta cggtggaaga
     1201 acattacagg gtaatgcaga gaaaaattct atagaagttt atcattttaa ctcattagat
     1261 catcttaata aaaacattaa aacacatgca tcgttaaacc tctatggtgg gtattctaat
     1321 gatggtgaag ctaatggaaa taaaattgta tttcgtctta aaaaaccttt aaaaatcagt
     1381 gataattttt atggaaaaaa ttattacaat ctttacggat gttttgctac agagggtgcg
     1441 aattttaatg tttttgatat acaaaatgat ttaacctatg aaaaagttcc acaaaattat
     1501 tctgataaat ttaccgtata tgcggcaaga actttaagtg gaaaagcaaa taataatacc
     1561 ttaagtataa aagattctgt tatttcattg cctttatatg cttttattac aagtgaaact
     1621 acgctagatg gtatagacta tatcgccgat gaatcaaaca ataatgaagt aaattttgaa
     1681 aatattaaat catctaaaaa tttaagtttg atgatcaatg ctaaaaatgt ttcaaataat
     1741 aaaataaatt ataatctcat tcagagttta accgaagcga gttctttagg aaagggctca
     1801 aaaattattt taaaagcaac tcaaaatgca aacaacaatc ttataaagct taaagattgt
     1861 tcttcggctg ccgtggaaag ttcgtgcatc ataaaagcag ataaagaaag tgcttttaat
     1921 aaaatcatca acaacaacac agcttttagt actgcctcag ataaaagaca aggttatgtg
     1981 gggttgatag ctggagtgtc tgcaaattct catgataata tcatggagct tgttaattta
     2041 aatatagatg agtataaaaa tcaagatgct atatttttag ctccatctgg aacttcggat
     2101 atttcaaatt ttaaatctta taacaatact ttatatttag gtggagagtt gaatttcttt
     2161 aaagatgtaa atatcgattt gctttctggt tctgtttttc atgaagtaaa taaaaaaggt
     2221 aaaataatca ctcaaattct accgcatcaa gaagattttt ctaaaaacaa tcgtttgatt
     2281 atagatactc aagatgtcaa atcagaagtg gtaaataact ttgaaaattt tacttttatt
     2341 ttaccaaata aaataaaaaa tcctatcttg actatagaaa aacttatcaa tcttcctgca
     2401 aatggaagta tggaaattct tactaaaaat aaaccaacaa aaggaaaata tattctcata
     2461 caaagtgatg ttggaattta tgatggtgac aatggattgt taaatcaaca agaattagaa
     2521 aatttgttag aaaaaatgaa aaataataaa aataaattta attacaacaa gatagaaaag
     2581 ttggctaaaa gtacattgaa aaatgtaaat tttagctttg aagtttcaga tgatgcaaaa
     2641 ataatttata tcaacatact ttaaaggaga gtaacatgaa aaagatgagt aaacatatag
     2701 ttttatcatt tgcggtgagt tctttgctct tttctcaagc ttatgcttta ctaagtgggg
     2761 gtaaatttac tcatggtaca agtgggacta tccatacctc tggcaatact gtaacgatta
     2821 caggaaaagg acaaaatcat gttatccaat ggggtggcgg ttttaatata ggacaaaatg
     2881 aaagtgtaaa ttttaacggc aaaaatcaaa actacctaaa cattgcttat caaaaagatg
     2941 cttctaagat agacggagct ttaaatagag ggaataacaa tatcttttta gttaatccta
     3001 tgggagtttt gattggcaaa acaggaacta ttactgcggg aaaatttgta gctagcacaa
     3061 cagctttaag tgatgataat gtcaaaactt ttttagagaa aggagctagt ttctctccgg
     3121 catttgatgt aagcaaacaa ggaaatatta taaatcttgg aaagatcaat gcagataata
     3181 ttgttttaat aggaaataag gttgaaatca ataaaggaaa aattactttg gatgtattaa
     3241 aacttgaagg taataaagtt tatgttgatg ctggagtggt aaaagataca aaaaatatcg
     3301 tagccaaagc agagcaagaa gctatcattc aacaaagcat aacaagtttt gaagaagatg
     3361 gagctttatt gggtaattct agtagtaaat ttagttttga tgatagtagt aaagttaaaa
     3421 actggactaa atatggaagt attgcggatg caacagaatg gaataaattt gctgattttt
     3481 ggaatgtaaa taaagaaaaa tttagaacag cttttgatca ttttcgtttg attgatgata
     3541 ttgattttag tggcgtgaaa acatacatag taggtgataa tacaagcaat gcttttgcta
     3601 aatctttcga tggttctggt tatgctttaa aaaatgttaa tattaattca tcaaatcaat
     3661 atgtaggaat ttttggagtt gttcaaaata gctatataag aaactttaat attcaaggat
     3721 tgaaaattgc ttcaactggt tatgatgctt agttggaggt atagtagggc aaaatattgc
     3781 aaacagttat acgggttttg aaaatgtgac tgttaatgat ctcgttatta atacagctgt
     3841 aaatactaaa gttggcggaa taataggctg gggaaatggt agtggaggga ataacactat
     3901 caattttaca aatgttgcta ttaataatat aagtatagta gcaaagaagg ttcttatgtg
     3961 ggtggcatag gcagacaaat tgatggtggt aattttaata atgttgtggt taatgacata
     4021 gaaaaactta taacttctgg gaatgatagt aaaacaggag gatttactgg aaaagttgga
     4081 aatttaaaga ttaataatgc ttacttattt tataaaatgg agcaattttg agtgctggaa
     4141 actataaaac acaagctgga aaagttattg gtgatcctgg aattagtgta aataataatt
     4201 ttagtaatat ttatgtttat cataatttag aaaatggtta cattgatgaa ggacagaatt
     4261 ttttaagtct gtgcaatata ataatgaagt aacaggaaaa aaagattttg atagtgctgt
     4321 aagaaagaaa tttaacgata taaaatatct tgataataat tcttatgctt ttgctgattc
     4381 ttttaccaag gcaacagatg ctgtgaaatt atccaaagac gactttgacc ctaaattgct
     4441 tcaaagaatt ttagatgatt tgatgaatgg aaaatacact tatgattttg ataccaaaac
     4501 ttggacttac acagatagta agggtgtggt aggaaaagat gaggctagtg aaatcactca
     4561 aagtttaaat ttcttaaatg cgtttaaaga tacgggagta gaacaagaat ttttaaagtt
     4621 atggcaaggt tcgcaagaac aaaattataa aaattatacc aatctttatg aaaaatggac
     4681 gcaaaagaaa actgctatgg ataaaatcaa aaccggcgaa ggttatttcg ctagttttaa
     4741 agaagaatta caaaaatacc aagaagcctt agctcaactt gacaaagaaa ataaaaacta
     4801 tgaaaaaatc aaagaatcag gcttagttag cgatgaaaca ttaagggcta tatatgaaaa
     4861 acttttagaa caaaaagaag ctcttgaaaa gcagtttgcg gatcttagtg gaaatgaagg
     4921 atttcgctat aagcttgaaa atgaaattct aaattctcaa ggtttttcta tagaaggtaa
     4981 agatgtagat ggtaaagtat acactggaaa ttttaatttt aaaggaaaat tagcctcatt
     5041 gccagaaaaa ccaaatatat ctatctatga gccagataaa caagggggtg aagatccaga
     5101 caaaccttct gtattgccgc ctgaaattcc tgaaaaggtt gtagaagctc ctataaaaat
     5161 tcaaaccgaa gtagacgcaa aaaaaagaag aagatgatga tcaagtggaa ataggagaag
     5221 cagatgctag aagtagtggt ttgcgttgta ttgtaagtga taattttaag acaatgaata
     5281 tttgtgtaaa tgcaaaatag gaaataaaaa tgagaaaaat tttagttgtt ttagtcttat
     5341 tgcaagtatt ttcacatgct gaagagctaa ataataataa aataagagag cttatagaaa
     5401 gctctcctga agcaaatgaa ccacaaaata aaaatttaaa aaatacatta aaaaatcaaa
     5461 aaagccctgt aaatttcaaa gagcaaaata ctacaaatat tacaaattca caaactgatc
     5521 aaaatgaagc taaggttttt gtaagagagt atgttttgca tatcgataat aaagatttga
     5581 catttaaaaa attaagaatt agcgaaaaat aaattcaaga tgcaatagct gaatatcgca
     5641 accaagaatt aagcttacaa aatttaaaag atataacaaa cattatagct tattattgtc
     5701 aattaagtgg ccatccttcg gcaactgctt atataccacc gcaagattta agttctaaca
     5761 aagtgcaaat taacatagct tttggaactt tataggaaaa gtaattatta aaaacaactc
     5821 aggtgtcaga gattatgctt tagagagtaa attgaacaaa aatcttaaag ggaaagttat
     5881 cacaactaaa aatgtggaaa atgaaattta taaaatcaat gaaatatacg gaatccaaac
     5941 caatgctaat ttacaatcag gtgatggttg tggagaaagc gatgttatta tagaagtaaa
     6001 caaaggtgag atagtgtaac tttaacttta tattctaaca actatgggac taaagaaaca
     6061 ggtcgtttta gagcaggaat gagtcaaagt ttaaacaata tagcaagata aggggataac
     6121 ttaaattttt atcttcaaga tagtgatgaa aatcaaacag attatgggat taattatagt
     6181 acttttatag ggaatttaaa aattactcca tttgcaactc aaggacatta tgttcctggc
     6241 agaatttata gaaatcttag tttttatagg gactctatga atgttggagt aaatttttct
     6301 tatcctgtgt ttttatatac tgagtattct ttatatcttg tttcgggttt tactcataaa
     6361 aagattaaag attattatct tgatggttta gtaagcaatg aaaaagcgag aaatagtgta
     6421 aatttgggca tagaaagaac ttatagaggt ttggagaata atgtcctaag ttatacttta
     6481 aattttatat atggtaatgt tgaaaatgat ggtgattttt ctggatttaa tggagtaaat
     6541 ttaggaaatt ttggaaaaat gaatttaaat ttaagcaaca aatatcaatt ctaagaacgc
     6601 ttaactcaca tttttcaact caattatcaa aaagttatca gcgatgctgt tttagatagt
     6661 agtgaatccg tatctttagg tagaccttgt ggtgtatgtg tttgtttaga aggtgaggga
     6721 agtgcggata atgttgtttc tggcgccttg ggaataagat ttcaaacacc tttagaaggg
     6781 ctttactcga ctccttttta tgatataggg tattcttggt atgaaaataa agaatatcaa
     6841 agtgaaaatc attatcttat ggatgcaatg ggtatataaa tactctatac aagaagtgct
     6901 aatttttatg taaaaatgga tgctgcaaga gctgttcatc agtttaaaca cgatggagaa
     6961 catcgagcaa gagtttatgc aagcctagaa aaatactttt aactttgggg tgattggaaa
     7021 atcccccccc ccatttttaa acccaccaaa tacttatata aatacttaca caaatattta
     7081 tactatttaa tcctttattt aatccccttt taagtttaat tggttatact ttcatttcct
     7141 tttttgaaaa aaggacttaa aatcttttaa attataaagt ttcactagct tagtagattt
     7201 tataaattaa ctcttttggt ttttgtctta taaactaaaa gcttttttat aaatcttgtt
     7261 ttttaattta aaaacttttc ttttaaaaat gattttttgt tttgttcttt taaattagta
     7321 ttgttattca aatcttatta gtcaatcttt gaaatctaaa taagtgatcg attgagccag
     7381 aacagattta ggcataagca attatgtaaa atctattcaa tctaataatt aaaaagatta
     7441 aaaacttttc ttttaatctt tcataacttt ttctttgaag aaaaagatta aactatctat
     7501 aattttttat ggagagtttg atcctggctc agagtgaacg ctggcggcgt gcctaataca
     7561 tgcaagtcga acgatgaagc ttttagcttg ctagaagtgg attagtggcg cacgggtgag
     7621 taaggtatag ttaatctgcc ctacacaaga ggacaacagt tggaaacgac tgctaatact
     7681 ctatactcct gcttaacaca agttgagtag ggaaagtttt tcggtgtagg atgagactat
     7741 atagtatcag ctagttggta aggtaatggc ttaccaaggc tatgacgctt aactggtctg
     7801 agaggatgat cagtcacact ggaactgaga cacggtccag actcctacgg gaggcagcag
     7861 tagggaatat tgcgcaatgg gggaaaccct gacgcagcaa cgccgcgtgg aggatgacac
     7921 ttttcggagc gtaaactcct tttcttaggg aagaattctg acggtaccta aggaataagc
     7981 accggctaac tccgtgccag cagccgcggt aatacggagg gtgcaagcgt tactcggaat
     8041 cactgggcgt aaagggcgcg taggcggatt atcaagtctc ttgtgaaatc taatggctta
     8101 accattaaac tgcttgggaa actgatagtc tagagtgagg gagaggcaga tggaattggt
     8161 ggtgtagggg taaaatccgt agatatcacc aagaataccc attgcgaagg cgatctgctg
     8221 gaactcaact gacgctaagg cgcgaaagcg tggggagcaa acaggattag ataccctggt
     8281 agtccacgcc ctaaacgatg tacactagtt gttggggtgc tagtcatctc agtaatgcag
     8341 ctaacgcatt aagtgtaccg cctggggagt acggtcgcaa gattaaaact caaaggaata
     8401 gacggggacc cgcacaagcg gtggagcatg tggtttaatt cgaagatacg cgaagaacct
     8461 tacctgggct tgatatccta agaacctttt agagataaga gggtgctagc ttgctagaac
     8521 ttagagacag gtgctgcacg gctgtcgtca gctcgtgtcg tgagatgttg ggttaagtcc
     8581 cgcaacgagc gcaacccacg tatttagttg ctaacggttc ggccgagcac tctaaataga
     8641 ctgccttcgt aaggaggagg aaggtgtgga cgacgtcaag tcatcatggc ccttatgccc
     8701 agggcgacac acgtgctaca atggcatata caatgagacg caataccgcg aggtggagca
     8761 aatctataaa atatgtccca gttcggattg ttctctgcaa ctcgagagca tgaagccgga
     8821 atcgctagta atcgtagatc agccatgcta cggtgaatac gttcccgggt cttgtactca
     8881 ccgcccgtca caccatggga gttgatttca ctcgaagccg gaatactaaa ctagttaccg
     8941 tccacagtgg aatcagcgac tggggtgaag tcgtaacaag gtaaccgtag gagaacctgc
     9001 ggttggatca cctcctttct agagtacaaa gtaataagtc tcacaactat tacttcaata
     9061 tataaactca attgattctt gtttagattt caaagattga tgataaagct aattgtttat
     9121 ggggaattag ctcagctggg agagcgcctg ctttgcacgc aggaggtcag cggttcgatc
     9181 ccgctattct ccaccattta ttaagggcct atagctcagc tggttagagt gcacccctga
     9241 taagggtgag gtcacaagtt caagtcttgt taggcccacc ataaaaaaga tttgaataaa
     9301 gaagctttaa aatctaaagc aagtatataa aatagattaa atataaaata taaactctat
     9361 acttagattt attttttatc tttaactata aaagaatata ctttaataga tataagtagc
     9421 atatacatta tgcatttata tttataatga ttatgttaat atatatactt cctttaggtt
     9481 ttaaacctaa atgttctttt taattatcat tgttaagagt cacaagcaag ttttaataaa
     9541 aacaatttta caggacttgt taaaggataa aacctattta tcttttcttt agtttaactt
     9601 aacttttagc tgtctttatt tctatgaata aagagaatat tggatttaag gattataaat
     9661 taaagacaag tttcaaactc acagcttagt tgagactaaa tcatttagtt ttatattaag
     9721 tgtttgaatg ctttccgtct taagataaag aagtcttatc ataaaaactt taacaaggaa
     9781 gtgatgcgtt ttagaatcaa taataaaagg taaaaaaagg taagctacta agagcgaatg
     9841 gtggatgcct tgactggtaa aggcgatgaa ggacgtacta gactgcgata agctacgggg
     9901 agctgtcaag aagctttgat ccgtagattt ccgaatgggg caacccaatg tatagagata
     9961 tacattacct atataggagc gaacgagggg aattgaaaca tcttagtacc ctcaggaaaa
    10021 gaaatcaata gagattgcgt cagtagcggc gagcgaaagc gcaagagggc aaacccagtg
    10081 cttgcactgg gggttgtagg actgcaatat gcaagaggta agtttagcag aacattctgg
    10141 aaagtataac catagagggt gatagtcccg tatgcgaaaa acaaacctta gctagcagta
    10201 tcctgagtag ggcgggacac gaggaatcct gtctgaatcc gggtcgacca cgatccaacc
    10261 ctaaatacta ataccagatc gatagtgcac aagtaccgtg agggaaaggt gaaaagaact
    10321 gaggtgatca gagtgaaata gaacctgaaa ccatttgctt acaatcattc agagccctat
    10381 gtagcaatac agggtgatgg actgcctttt gcataatgag cctgcgagtt gtggtgtctg
    10441 gcaaggttaa gcaaacgcga agccgtagcg aaagcgagtc tgaatagggc gcttagtcag
    10501 atgctgcaga cccgaaacga agtgatctat ccatgagcaa gttgaagcta gtgtaagaac
    10561 tagtggagga ctgaacccat aggcgttgaa aagccccggg atgacttgtg gataggggtg
    10621 aaaggccaat caaacttcgt gatagctggt tctctccgaa atatatttag gtatagcgtt
    10681 gtgtcgtaat ataagggggt agagcactga atgggctagg gcatacacca atgtaccaaa
    10741 ccctatcaaa ctccgaatac cttatatgta atcacagcag tcaggcggcg agtgataaaa
    10801 tccgtcgtca agagggaaac aacccagact accagctaag gtccctaagt cttacttaag
    10861 tggaaaacga tgtgaagtta cttaaacaac caggaggttg gcttagaagc agccatcctt
    10921 taaagaaagc gtaatagctc actggtctag tgattttgcg cggaaaatat aacggggcta
    10981 aagtaagtac cgaagctgta gacttagttt actaagtggt aggagagcgt tctatttgcg
    11041 tcgaaggtat accggtaagg agtgctggag cgaatagaag tgagcatgca ggcatgagta
    11101 gcgataatta atgtgagaat cattaacgcc gtaaacccaa ggtttcctac gcgatgctcg
    11161 tcatcgtagg gttagtcggg tcctaagtcg agtccgaaag gggtagacga tggcaaattg
    11221 gttaatattc caataccaac attagtgtgc gatggaagga cgcttagggc taagggggct
    11281 agcggatgga agtgctagtc taaggtcgta ggaggttata caggcaaatc cgtataacaa
    11341 tactccgaga actgaaaggc tttttgaagt cttcggatgg atagaagaac ccctgatgcc
    11401 gtcgagccaa gaaaagtttc taagtttagc taatgttgcc cgtaccgtaa accgacacag
    11461 gtgggtggga tgagtattct aaggcgcgtg gaagaactct ctttaaggaa ctctgcaaaa
    11521 tagcaccgta tcttcggtat aaggtgtggt tagctttgta ttaggattta ctctgaaagc
    11581 aaggaaactt acaacaaaga gtccctcccg actgtttacc aaaaacacag cactctgcta
    11641 actcgtaaga ggatgtatag ggtgtgacgc ctgcccggtg ctcgaaggtt aattgatggg
    11701 gttagcatta gcgaagctct tgatcgaagc ccgagtaaac ggcggccgta actataacgg
    11761 tcctaaggta gcgaaattcc ttgtcggtta aataccgacc tgcatgaatg gcgtaacgag
    11821 atgggagctg tctcaaagag ggatccagtg aaattgtagt ggaggtgaaa attcctccta
    11881 cccgcggcaa gacggaaaga ccccgtggac ctttactaca gcttgacact gctacttgga
    11941 taagaatgtg caggataggt gggaggcttt gagtatatga cgccagttgt atatgagcca
    12001 ttgttgagat accactcttt cttatttggg tagctaacca gcttgagtta tcctcaagtg
    12061 ggacaatgtc tggtgggtag tttgactggg gcggtcgcct cccaaataat aacggaggct
    12121 tacaaaggtt ggctcagaac ggttggaaat cgttcgtaga gtataaaggt ataagccagc
    12181 ttaactgcaa gacatacaag tcaagcagag acgaaagtcg gtcttagtga tccggtggtt
    12241 ctgtgtggaa gggccatcgc tcaaaggata aaaggtaccc cggggataac aggctgatct
    12301 cccccaagag ctcacatcga cggggaggtt tggcacctcg atgtcggctc atcgcatcct
    12361 ggggctggag caggtcccaa gggtatggct gttcgccatt taaagcggta cgcgagctgg
    12421 gttcagaacg tcgtgagaca gttcggtccc tatctgccgt gggcgtaaga agattgaaga
    12481 gatttgaccc tagtacgaga ggaccgggtt gaacaaacca ctggtgtagc tgttgttctg
    12541 ccaagagcat cgcagcgtag ctaagtttgg aaaggataaa cgctgaaagc atctaagcgt
    12601 gaagccaact ctaagatgaa tcttctctaa gctctctaga agactactag tttgataggc
    12661 tgggtgtgta atggatgaaa gtcctttagc tgaccagtac taatagagcg tttggcttat
    12721 ctttaataaa gcatcacttc cttgttaagg tttttaagaa gactttgaat atagataata
    12781 tttagagttt aatagaaatc tttcaagtaa agtttatatt agaacttgct cttaacattg
    12841 ttttttaagt attctatata aaaacttatc aaagataaaa gataagaaaa gaagaaagag
    12901 aataaagaaa aaagtaaagg aataaaagat taagttttat tcttaaattc aatctttcaa
    12961 agaatattta aataacaatg tccgtgatta tacagatgtg gaaacgcctt gctccatccc
    13021 gaaccaagaa gctaagcaca tcgtgggtga tgatactacg ccttactggc agggggaaag
    13081 t
//
LOCUS       DARBAR010000042        13024 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.042, whole genome shotgun sequence.
ACCESSION   DARBAR010000042 DARBAR010000000
VERSION     DARBAR010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13024)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13024)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13024
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.042"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(232..1428)
                     /locus_tag="SB815_000885"
     CDS             complement(232..1428)
                     /locus_tag="SB815_000885"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEG0906629.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            1569..2792
                     /gene="sstT"
                     /locus_tag="SB815_000886"
     CDS             1569..2792
                     /gene="sstT"
                     /locus_tag="SB815_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEG0906630.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIALGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFFASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            2802..3689
                     /locus_tag="SB815_000887"
     CDS             2802..3689
                     /locus_tag="SB815_000887"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEG0906631.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGNVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSNERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            3693..5414
                     /locus_tag="SB815_000888"
     CDS             3693..5414
                     /locus_tag="SB815_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEG0906632.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYTLNAN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSREFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDENRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFDQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNHTNKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            5408..5845
                     /locus_tag="SB815_000889"
     CDS             5408..5845
                     /locus_tag="SB815_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906633.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQVENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            5842..7917
                     /locus_tag="SB815_000890"
     CDS             5842..7917
                     /locus_tag="SB815_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEG0906634.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLSGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPKASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVGITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            7914..8732
                     /gene="truB"
                     /locus_tag="SB815_000891"
     CDS             7914..8732
                     /gene="truB"
                     /locus_tag="SB815_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEG0906635.1"
                     /translation="MNKIFAAFKPKGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLANLKQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYINLKPNF
                     IKDLNKLENGAKIFVEELEFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            8726..8953
                     /gene="csrA"
                     /locus_tag="SB815_000892"
     CDS             8726..8953
                     /gene="csrA"
                     /locus_tag="SB815_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HEG0906636.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            8950..9717
                     /locus_tag="SB815_000893"
     CDS             8950..9717
                     /locus_tag="SB815_000893"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEG0906637.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDVFDELELIDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSRRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLINETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSSCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDRGIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            9714..10166
                     /gene="smpB"
                     /locus_tag="SB815_000894"
     CDS             9714..10166
                     /gene="smpB"
                     /locus_tag="SB815_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEG0906638.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEARAAMKNYK"
     gene            10177..10779
                     /locus_tag="SB815_000895"
     CDS             10177..10779
                     /locus_tag="SB815_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG0906639.1"
                     /translation="MKKISALFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFAGDYGAYYFLSNGSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            10779..11069
                     /locus_tag="SB815_000896"
     CDS             10779..11069
                     /locus_tag="SB815_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HEG0906640.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVMDAAKLANFPLQAKVEEE"
     gene            11066..>13024
                     /locus_tag="SB815_000897"
     CDS             11066..>13024
                     /locus_tag="SB815_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG0906641.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLNKIQELQNHENIQNLNNHTSDLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILSELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDSAIDLIDELGASFALNPRAKKNAN
                     LKDLENVLAKMTHHHKMFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKALAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSVDDKAKIY"
BASE COUNT         4909 a         1913 c         1992 g         4210 t
ORIGIN      
        1 aaattttaat tttaaagtaa tttaagttat tttatattat aattctgtca aacaatattt
       61 tgacttagag gggtttttac cccaaagcta aattaattta gcttccttcc taacttttat
      121 atttatgagg gatattgaaa aatatccctc taagtcaaaa attaatataa ctttattaat
      181 tctttataat tatacaagcc ttgtttaagc ttgtataata ttgttaattt tttaaagtag
      241 ctttttaaac tgttctagag catcaagttt ttcccaagga tagtcctttt gtcctacttg
      301 cccacgagct gctacatccg cataaagaaa agtttcttta cttggtttat ccagatgaaa
      361 tttatcacgg atccaatttg gcgttaaaga gaaattttgc attacaaaat cacttaaaac
      421 atcgtcattt acactggtat ttgtgcccat acaatccacg cttaccgaag taggttttgc
      481 aacacctata gcataactaa gttgaactat acatttttta gcaagccctg ctgcaactat
      541 gtttttagct aaccatctac ctgcataaag tccacttcta tcaactttag tataatcttt
      601 gctcgattgt gcgccaccac ctattggaga ataacctcca aaactatcta ctataagttt
      661 tcttcctgtt aaaccactat catgtaaaga agaatgatta acatatttac cagttggatt
      721 gattaaaatt ctagtcttat taggatcaaa aagttctttt ggtaaattac tatctaagat
      781 aagtttcatc actaaagatc ttaaatcttc tattttcata ctttcaacac aaggtgcaga
      841 aactactata gtatgaatac tttgcggttt acaattttca aaattcgcct tagtgccata
      901 atctatagtc acttgagttt taatatccac tccaagttca tgtggatttg cttttgcata
      961 agcataaact ctatcacata gcattcttgc ataactaata gctgctggca tatattcctc
     1021 agcttcacaa cttgcaaaac caaacataat gccttgatca cctgctcctg tttcgccatc
     1081 ttcttgatcg acaccttggt tgatatcagg gctttgttca tttaaaaaca ccataacatc
     1141 aacctcatca ggatgtaaac actgctcttt gctaaaatgg cctgctccgt cataaccaat
     1201 gttttttaaa acatctttaa ctaaattatc gtaatcagct ttactaagtt tgtgatttga
     1261 cttaacttcg cctcctatca caaccttatt tcctgcgaca aaaacctcac tcgccaccct
     1321 tgaatttttg tcatttttca agagtatatc cactatcgta tcagcgatta tatcagcgca
     1381 cttgtctgga tgacctgcac ttacgacttc tgaagtgaat agatacataa aaagtccttt
     1441 catttaaaat gaaccacaat tgtatccaaa taaacttatc aaagcttgat aaattaaaaa
     1501 ttctctaaaa ttaagcaaaa gttagttaaa atcaactttt gatataaaaa atatttaata
     1561 aggtttttat gttttctaaa atcattcaaa gctacgctaa aggcaacctc atagttcaaa
     1621 tttgcatagg tatagcacta ggaatactta taggcattag ctctaaagaa atatctgaaa
     1681 ttgcaaattt acttggaata ctttttacaa gtgccttaaa agctatcgct cctatgcttg
     1741 tttttatttt aattttaacc tcaatttgca ctaaagattt ttctcaaagt ggtgctaaga
     1801 tcaaaaatat tatcatttta tatatagtag gcaccttttt tgcttcagct tgtgcagttc
     1861 ttgctaattt tttcttccct gtaaagcttg ttttagatgg agttcaaact gctacaaact
     1921 catctccaac ccacatgagt gatattttca aagatctttt atttaaaatt gtcgataatc
     1981 ccataaatgc tctttcaagc ggaaattatt taggaatttt aacttgggca atagctggag
     2041 gtatagcatt aaaacactgt tctaacgaag caaaacaagt ttttatagat atcaatgaag
     2101 gggttttaaa aatcgttaaa tttgtagtaa aacttgcccc ttttggaatt tttggacttg
     2161 tggctaattc tgtagcacaa acaggagcac aaggtttgct aagctatgta aaacttttaa
     2221 ttttacttgt agctactatg ctttttgtta cttttgttat caatgcctta atagtctttt
     2281 tttatacaag aaaaaatcct tttcctttaa tttttatctg cttaaggcac agtgcatttt
     2341 ttgccttttt tacaagaagt tcagcggcaa atattcctgt aaatatggca ctttgcgcta
     2401 aacttggcat agataaagaa ttttatggca tttctatacc tttaggagct actatcaaca
     2461 tggcaggagc agcagttact atagctattt taagtcttac tgcagccaat accgttggta
     2521 tagaaatcag tcttttacaa gcctttttat taagcattat tgccaccttt gcagcttgtg
     2581 gggctagcgg agttgcgggc ggatctttac tgcttatacc tttggcttgt tctttattta
     2641 atatagacta tgatattgct atgaaggtag ttgccatagg ttttattata ggggttattc
     2701 aagatagtgt tgaaactgct ttaaatagtt ctacagatgt tctttttaca gcaatttgtt
     2761 ctaaaaatga attaaattac aatatcaaat aaggtaaaaa catgcgtcat ctcatcacta
     2821 caaaggattt taataaagtc gaaattatgg agctttttaa agaagcaagt gatttcttag
     2881 atgaaaaacc taggactttt cttgaaggaa aaagcatcac gacaattttt tttgaaaact
     2941 ctacacgcac cctttcatct tttgaaagcg ctgcaagaag attaggtgct agggttttac
     3001 gccttgatgt ttcaagatca agctctagca aaggagaaac tctttatgat actgctgcta
     3061 atttagatgc catgagtcct aatgctattg ttgtaagaca cgcaaactca ggagttcctt
     3121 tgatattagc aaagcatatg cattgtccag ttgttaatgg aggagatgga aaacacgccc
     3181 atcctaccca agctttactc gatttgttta cgatttataa tcattttcaa ggtaatgttg
     3241 aaggtaagaa aatttgcatc gtaggtgata tcaaaaattc ccgcgttgca gcgtccaata
     3301 tagagctttt aagtagattt aatcttgata ttaccctagt agctccacca cattttatgc
     3361 ctaataccca tcttaaaaaa cattataagc ttgatgagaa tatcatagca aattcagata
     3421 ttatcatgag tcttagaaca caaacagaaa gacataataa aaccgtttat gcttcactta
     3481 aagactatgc aaatgatttt tgcattcaaa aaagcttagt aaaggataaa aagcttattt
     3541 tactacatcc aggccctgta aatcgcaata ttgacataag cgatgaaatg atgagcaatg
     3601 aaaggacttt agttttaaaa caagttaaaa atggagtggc tattagaatg gctgttctta
     3661 aaaaactcat actagaaaat gaaggataaa aaatgttaga atgggattta agtgctttat
     3721 ttcacgataa agaagcattg caaaatttta cacaagacca aatccaacaa agtttaaatt
     3781 ttaaaaaaaa ctatgaaaat aaactttata cattaaatgc taatgagttt ttacaagctt
     3841 taaaagatta tgaaaattta aatcaagccc ttggcaaaat catgacttat gcttatttgc
     3901 tttttgctaa aaacactcaa aatggttctt tttatgcaca atacgaagaa gaatgcaaaa
     3961 aaatagaaga aaatttactc tttttcgagc ttgaattttg cgagttagct cctgagaaaa
     4021 gtcgagaatt tacaactttt tgcaaagatt atgattttta tctttctaat ttattgcaaa
     4081 acaaacgcta taatcttagc aaaaacgaag aacgcattat gctttatctt tccaatacag
     4141 gtgcaaatgc ttttagtaga ctttttgatg aaagtatgag tgctttaaaa atcccttttg
     4201 aaggtaaaaa acttagcgaa gaagaaattc taagcaaaat gtatgatgaa aatagaaaga
     4261 tacgcaaaaa agctgctaaa aaattcagta aagtcttaca aaaaaatagc agacttttaa
     4321 gttttattat caatatgata aaaacagaaa gaaaaaatat aagcttatta agaggttatg
     4381 aaaatgctga aatttcaaga catatcagca atcaaatttc acaaaaaagc gttgattctt
     4441 tgatagcaag tgcgcaaaaa cattttaact tagtatcgca attttacaaa agaaaaaaac
     4501 aaattttagg ctatgatgag cttaaagact atgacagata tgcacccata ggaaaagaag
     4561 caagttttga ttttaaaaca agtaaaaata ttgttttaga ggcatttcaa gctttttctc
     4621 ctcaatttta tgatatagca aaaaatgctt ttgatcaagg ttggattgat gtttatccgc
     4681 aagaaaataa acaagggggt gctttttcgc attctgcaac ttctgatgca catccttttg
     4741 ttttattaaa ccacaccaat aaaagacgcg atctttttac acttgcacat gaattaggac
     4801 acactatcca tcaaaaactt tcttataatg taagctattt aaatcaaaat acacctttaa
     4861 ccaccgcaga aacagcttca gtttttgctg aaatgctcgt atttgatttt attaaagata
     4921 agttaaaaaa agaagaactc ttatctttat atgcaaataa aatcgaagat atttttgcaa
     4981 ctttttatag acaaattaat tttacttgtt ttgaaagacg cttacatgct caagaaaatg
     5041 aacttagcac tgaagaaatc aataaaattt ggatggaaga atctcaaaag atgtttcaag
     5101 acagcgtaaa acttacaaaa aattatgctt cttggtggag ttatattcct cattttatcc
     5161 attctccttt ttactgctat gcttatgctt atgcacaact tttagtttta gctctttatg
     5221 gactttacaa aagtaaaaaa tgtgaaaatt ttaaagaact ttatatcaaa atgctttctt
     5281 taggtggaag cgtgagtcca aaagaactag taggaatgtt tggatttgat atagaagatg
     5341 aaaatttttg ggaaataggc ataaaagaaa ttcaaaaact catcaatgaa ttcatggagt
     5401 tacaatcatg ctagaaacaa tcttaaaaaa tgaaaatttt atccatacca tgcaaaagca
     5461 ttgttatgaa gttatttcac accttataga agaaaatata gaattttcca tagttgcaaa
     5521 tacaaatttc atagatttta accctgaact tcccaaagag cttgatatta aacaaaatcc
     5581 ttatgctctt tttgctcttg gaggatacac ctttgaatcc atacaactaa ataaagattt
     5641 cattcaattt cacgcaggtt ttggaaatga tgattttgat agttttgtaa aggttgattt
     5701 aggagctatc acgcaaattc aagtagaaaa tagcatttta ttcgttaatt ttagtcttta
     5761 taaacgtgaa gatagcaaaa atttacaaaa atctaaaaat atatttttaa ataatccaaa
     5821 aaataaagat attttcaaaa aatgaatcta tttgaagatt taaatgatag tcaaaaacaa
     5881 gcggtaagcc acattgatgg agccatgctt atcctagcag gcgcaggtag tggaaaaacc
     5941 aaaactatca ccactcgtct tgcttatctt atcggtgaag taggcatccc ctcacataac
     6001 actcttactc ttacttttac aaataaagca gctagtgtta tgcgtcatag agcattaaat
     6061 tttctacaag gcaatcacaa tcctttgctt tgcacctttc ataaatttgg acttttattt
     6121 ttaaaactcc attttgaaag attggagcgt aaaaatagtt ttattgttat cgatacagat
     6181 gatacaaaaa aaataattaa agacttaatc catgataaaa acaaagataa tgtctatgat
     6241 attatccaat acatatctta ttgcaaaaat gaaggcaaaa gagtaagcaa tgtctttgaa
     6301 gatttaaatt tactaaaaga acataatttt gaaaaatatc aaaatgaata caaatttgcc
     6361 aactattacc gtgcttatga agaatactta ttaaaacaaa attttgtaga ttttgatgat
     6421 cttttattgc taagcaatct cattttagaa aatgatataa attttgccaa agaacaaagc
     6481 ttactttata attacattac agttgatgag tatcaagata ctaatacctt gcaatataaa
     6541 attctaaaaa atctatgttg tatgcatgaa aatatcacag ttgttggtga tgatgatcaa
     6601 agtatttata gttggcgtgg agcaaaaatt gaaaatattt taaattttca aaatgatttt
     6661 aaaaatgtta aacttgtaaa acttgaacaa aactatcgtt cagtagggac tattttacaa
     6721 gcagcaaata atctcatatc tcacaatgag caacgacttg gaaaaacttt aatctgcact
     6781 aaagatactg gggaaaatat taaaatatta aaaaacgaaa acgaaaaaga tgaaggttta
     6841 tatatcgctc aagaagtgaa aaaattgcta aattctggag tagaagctaa agagatcgcc
     6901 attttatttc gagttaatgc actatcaaga gcaatagaag aagcatttat gaagaaacaa
     6961 atttcttata aactacttag tggtatgcgt ttttatgaga gattagaaat aaaagattta
     7021 atctcgtatc ttagacttat cttaaatcca agcgatgatt tgtcgtttaa acgtattatt
     7081 aatcgcccca aaagatccat aggagaaaaa gccctaaaaa atttagaaga atatgcaaaa
     7141 aaacgtcaaa tttcactttt tgatgcccta tgcgaaagcg atggtggtgt aggaatttta
     7201 acaacaaaaa aagcacaaaa tgaagcaaat atttttatac aaaatattca cactctaaaa
     7261 agctacgata atgcaaaaaa ggtttttgac aatatagaag aattatttaa aatcaaagat
     7321 tatttttcag agcaagatga tggagatgaa agaatcagaa atcttgatga gttttatgct
     7381 aatctaagag aaaaactcaa agaagatccc aaagcttctt tagaagatct acttagtgaa
     7441 atttctttat taagcgatca agataattta gatgaagaat gtgtttgctt gatgagtatt
     7501 catgctagca aaggtttgga atttgattat gtttttataa taggctttga tgaaggattt
     7561 tttcctttaa atagcgaaga aaatctcgaa gaagaacgcc gtcttgctta tgttggcatc
     7621 actcgcgcca agaaatttct cacaataagt gttgcaaatt ctcgttttta tcatggttca
     7681 agagcaaata tcaatcctag tcgcttctta gaagaaagta aattaatcaa tgaaaaatca
     7741 aaaaatcaaa atatacaaaa aactagtttt tgcaaaggag atctagttaa acataaaatt
     7801 tttggcattg gcagggttgt tgaagttaat aaaagcggaa aagaggaaaa gcttaatatt
     7861 aattttggtg gtataatgcg tgtaatcatg gcaagctttg tggaaaaagc agtatgaaca
     7921 agatctttgc agcctttaaa ccaaagggtt tgagttctaa tgccttttta agtactttaa
     7981 agaaaaaata taaaaataaa aaagcaggat attctggcac tcttgatcct ttcgccaaag
     8041 gggttttaat cgttgcattt ggacaataca caaaactttt ccgtttttta aaaaaaaccc
     8101 caaaaaccta taaagctact ttatggcttg gagtttactc cttaagtctt gatgatcaaa
     8161 atataaaaga aattcaaaat ataaaagaat ttgatcttgc aaatttaaaa caaatcattg
     8221 atcaaatgca aggaattatc tcctatacac cacctcaatt tagcgccaaa agaatcaatg
     8281 gaactcgcgc ctatgaactt gcaaaaaaag gtatagaagc aaatttaaaa ccttgtcaaa
     8341 tggaagtatt tgattgtaag atcttaagct ataatcatcc ttttttaaat attgaaatca
     8401 cagtcagtga aggtgcttac ataagatctt attgtgaact ttttgctaga aaactaggta
     8461 ttaatgcgac tttaagctct ttagagcgca ttaaagaagg caaatttgtt tataataatg
     8521 agaaaagctt aaatgtgtta aaatacatta acctaaagcc aaattttatc aaggatttaa
     8581 ataaactcga aaatggtgct aaaatttttg tcgaagaatt agaatttcat gatgaaggag
     8641 attattatat tgaaacagaa aaatatttta gcataattaa tattaaagaa aatacagtaa
     8701 aatatcttct aaataaggtt gaaaaatgtt aatattatca agaaaagaaa atgaaagtat
     8761 aattatcgga gaaggtatag aaatcaaagt cgttcaaaca gggaaaggat atgccaaaat
     8821 aggtatagaa gctccaaaat cccttatgat acttagaaaa gaacttgttc aacaagtaaa
     8881 ggatgaaaat ttgcattctg ttgttcagaa tgatattaaa cttgatgact taagcaaaaa
     8941 actaatcaaa tgaaagctta cgctaaagca aatatttttt taaaacttac cggttttgac
     9001 tcaagaaaat atcatctttt agaatcacga tttatacttt taaaagatgt ttttgatgag
     9061 cttgagctta ttgataaaga atcagattct aaaaaagaat ttgaaatcat tagtaatttt
     9121 aaatgcgaaa ataatattat tcaaaaggct tatttgctac tttctagaag atataataac
     9181 gaattaaaag aattatttag caaaaaaagt ctaaaactca caaaaaatat cccagtatgt
     9241 gctgggcttg gtggtggaag tagcgattgt gcgagttttt tactactaat aaatgaaacc
     9301 ctaaatttaa aattaaacct acaagaactt ataaatttaa gcatacaact aggaagtgat
     9361 attgcctttt ttttaagtgg ctttcactct gctaatgtaa gtagctgtgg cgaaattata
     9421 gaagaatttg aagatgacat acctaattta aaatggactt ttccacaaat atcttgccaa
     9481 actaaagctg tttatgatga atttgataga ggaatatttg actttcaaaa aaacaataat
     9541 caagcgcaaa tctacaaaaa actcagcaca aaagagttgt tacaaaactt taaaaacaaa
     9601 gaattaaatg atttatttac tccttgtgca actttatatc ctaaaatgaa gtcttacttg
     9661 caagaagatt tttttctaag cggtagcggt agtagtgttt ttaaggttga tcgatgaaaa
     9721 ttattgcgag aaataaaaaa gctttatttg attatagcat catagaacgc tttgaagccg
     9781 gaattgtcct taaaggaagt gaagttgtag ccttaagagc aggaagagca aatcttaaag
     9841 actcttttgt tcgcattata aaaaatgaga tttttttact taattctcat atttcattgc
     9901 ttcatactac acattctttc tataaacacg aagaaagagg tgctagaaag cttttaatgc
     9961 atagaaagca aattgataaa ttattaggta aagtaagtat agaaggatat actatcgttg
    10021 cattagatct ttattttaac acaaaaaata aagtaaaagc tacccttgct ttagctaaag
    10081 ggaaaaattt gcacgacaag cgtgaaactt taaagaaaaa gcaagccgat ttagaagcta
    10141 gagctgctat gaaaaattac aaataaagga aaataaatga aaaaaatttc agccctattt
    10201 ttaataagtt tagcattttt tcttaatgct tgctccaagg aagaagaaat tcaaaatgat
    10261 tttatgtttg aagagtatca caaaggagat aaaatagtct taaatagtgt aaatggtgga
    10321 agcaaaactt taataagaac agataaaggt tttgtggtgg aaggagagga aggaaaagtt
    10381 ctaatgtttg atttttttgg cactttttgc accccatgta aagaagaagc tttagatctt
    10441 agcaaacttt ggaaaaataa ttctagcaaa tttatcatta taggacttac acattttgaa
    10501 gatgttagcg atgaaacagt taaaaaattc gcgggtgatt atggtgctta ctattttcta
    10561 agcaatggca gctctaatga tcgtattatt gctcaaattt taaaagatat agactatcaa
    10621 aatatggagc aacttccttt taaagttgtt ttaaaaaatg gaatttatca aaaaataagc
    10681 gattactgga ataataatac tccaacaaat ttttatcttg gtaaaattcc aacagaactc
    10741 atgcaagaag atttaaataa aatctacaaa ggaaaataat gccaaaaacc caaactctag
    10801 agcaaacaaa acttagtgaa ccaaaaatgt ataaagttat actcttaaat gatgatgtaa
    10861 caaccatgga ttttgtcata gaaattttga tgaatatttt tcatcaaaac cttgagaaag
    10921 caagtcaaac aatgttagaa attcatcaca atggttctgg aatttgtggc atttacaccc
    10981 aggaaatagc tctttcaaaa caaaaaaaag ttatggatgc ggctaaactt gctaattttc
    11041 cactacaagc aaaggtggaa gaagaatgaa ataccaagaa aatttacaaa aatatcttga
    11101 taatgccaaa aatctaagct taataaatca ccatgaattt gttacctgtg agcatgtact
    11161 gtttgcatta ctaaaactaa gcactgattt taaggatata tttgaagaat tttcagatgg
    11221 agatcttgaa cttctagaaa ctgaattaaa aaattacatt tctcaaaaca atcaagttat
    11281 taaacaagaa atagaaccta caatatctgt tgttttagat gaaatcttac tttcatctaa
    11341 aaataaaaat aatgaaatta aaattataga ttttttagaa aagctcatac aggattcaag
    11401 aagttattct agctatctct taaaaaaaca caacataaat cttaacaaaa ttcaagaact
    11461 tcaaaatcat gaaaatatac aaaatttaaa caaccacaca agtgatttaa cacttttagc
    11521 tcaaaatggc aaaattgatc ctttaatagg aagaaaattt gaacttgaaa gaatgatgca
    11581 aattctttca cgtcgcaaga aaaataatcc tattttagta ggagaagcag gagttggaaa
    11641 aacagccatt gtagagggat tagcattggc tattgcggaa aaaaaggtgc ctaaaaactt
    11701 acaaaatgca aaaattttta gtcttgatat ggctagtata cttgcgggaa caaaataccg
    11761 tggagatttt gagaaaagaa ttaaagaaat tttaagtgaa cttgagaaaa tacccaatgc
    11821 tattttattt attgatgaaa ttcacactat agtaggagct ggaagcacag gagaatctca
    11881 tactgatttt tccaatcttt taaaaccagc tctaagcaat ggaactttaa aatgcatagg
    11941 tgcaacaact tttatggaat ataaaaatac ttttgataaa aataaacccc taagtcgccg
    12001 ttttgctaaa ataaatgtag atgaaccaag ccaagaagaa agcttgcaaa ttcttaaagg
    12061 attaaaaaac aaatatgaag aatttcatca tatcaaatta aacgatgaaa ttcttcaata
    12121 tgctgtaatt tggggtaaaa aattttttaa tgataaattt ttacctgata gcgctataga
    12181 tctgatcgat gaacttggcg cttcttttgc tttaaatcca agagctaaaa aaaatgccaa
    12241 tttaaaagat ttagaaaatg ttttagcaaa aatgacccac catcacaaaa tgtttgaatt
    12301 cgatcaaaat aaagctttaa tgaacttaaa aacaaattta aaagcaaaaa tttttggcca
    12361 agatgaagtt atagatagcc ttgtttcatc acttaagcaa agtttcgcag gatttaaaaa
    12421 ttccaataca ccacgcggag tgtttttgtt tactggatca agtggagttg gaaaaacaga
    12481 actttgcaaa gctttagctg aatttttagg tttaaattta gaacgctttg atatgagtga
    12541 atatgcagaa aaacatgcta taagtaaact aataggatct ccagctggat atataggttt
    12601 tgaagagggt ggacttttaa gcaatgctat tcgcaaaaat cctttcagtc ttgttctttt
    12661 tgacgaaata gaaaaggctc atcctgattt aagcaatacc tttttacaga tttttgacaa
    12721 tgctgaactc accgacaata gtggtcttaa agtagatttt aaaaatacaa tcattattat
    12781 gacatctaat ctaggactta aagaaagcaa tgagcttggt tttttaagta aaaatgaaga
    12841 aaaaagtaat cgtgctatca aagacttttt tgctccagaa tttattaatc gcattgataa
    12901 aattttacat tttaatgatt taaacgatgc tatacttgtt aaaattatcg aaaaagaact
    12961 tgacgaaatt tctaaaaatt taaataatat aaaattatca gtggatgata aagctaaaat
    13021 ttat
//
LOCUS       DARBAR010000043        12792 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.043, whole genome shotgun sequence.
ACCESSION   DARBAR010000043 DARBAR010000000
VERSION     DARBAR010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12792)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12792)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12792
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.043"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(121..206)
                     /locus_tag="SB815_000898"
     tRNA            complement(121..206)
                     /locus_tag="SB815_000898"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(170..172),aa:Leu,seq:gag)
     gene            complement(241..579)
                     /locus_tag="SB815_000899"
     CDS             complement(241..579)
                     /locus_tag="SB815_000899"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEG0906642.1"
                     /translation="MKKVLFLLLACTAVAFAAETNAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
     gene            812..2146
                     /locus_tag="SB815_000900"
     CDS             812..2146
                     /locus_tag="SB815_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG0906643.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFEFWYVFLRFISPLAVVIVMIAAFLK"
     gene            2159..3499
                     /locus_tag="SB815_000901"
     CDS             2159..3499
                     /locus_tag="SB815_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG0906644.1"
                     /translation="MRTYFSKIGFVLTVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFVLSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFLHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGVGIVFISLMSLFNQLGALGYIFAFCFFLALFFAGITSAVSMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNFLLPLGA
                     IVCSIFVGFFMNKKQIYKIFSKFISRKIFLIWLFFIRFISPIAIILVMCYQIFV"
     gene            3531..5330
                     /locus_tag="SB815_000902"
     CDS             3531..5330
                     /locus_tag="SB815_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HEG0906645.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGSSELID
                     LHAKLFAKHGTTTIRNFDALNDINNLKFSGECIAKHGLKHEIAITLMDLPPNCKGAHD
                     VPFYEKILKEILAAEIPFHSICFKDASGTSNPNKIYETIKMARKILPQDMHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LKYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGSWKKIAEGYGKMVLGYFGKTPVAPD
                     ANIIELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFVAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSADENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEVLAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIILELCIKIGDTVNEGEVLAIYKN"
     gene            5343..6917
                     /gene="pckA"
                     /locus_tag="SB815_000903"
     CDS             5343..6917
                     /gene="pckA"
                     /locus_tag="SB815_000903"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEG0906646.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     HEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            6927..8309
                     /gene="argH"
                     /locus_tag="SB815_000904"
     CDS             6927..8309
                     /gene="argH"
                     /locus_tag="SB815_000904"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEG0906647.1"
                     /translation="MKNEMWSGRFSGASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYATNRELSAKIL
                     GFKDIMPNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(8331..9434)
                     /gene="ychF"
                     /locus_tag="SB815_000905"
     CDS             complement(8331..9434)
                     /gene="ychF"
                     /locus_tag="SB815_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEG0906648.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFKFNV"
     gene            complement(9431..10882)
                     /locus_tag="SB815_000906"
     CDS             complement(9431..10882)
                     /locus_tag="SB815_000906"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEG0906649.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISNEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNHA
                     SVHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAAMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(10879..11475)
                     /locus_tag="SB815_000907"
     CDS             complement(10879..11475)
                     /locus_tag="SB815_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG0906650.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKCYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(11494..12042)
                     /gene="apt"
                     /locus_tag="SB815_000908"
     CDS             complement(11494..12042)
                     /gene="apt"
                     /locus_tag="SB815_000908"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEG0906651.1"
                     /translation="MIKLTQEEQKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLKHLKERYKNYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLIN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(12039..12371)
                     /locus_tag="SB815_000909"
     CDS             complement(12039..12371)
                     /locus_tag="SB815_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906652.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(12371..>12792)
                     /gene="rpiB"
                     /locus_tag="SB815_000910"
     CDS             complement(12371..>12792)
                     /gene="rpiB"
                     /locus_tag="SB815_000910"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEG0906653.1"
                     /translation="YIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCDYPDYAH
                     LLAEKINKRSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDANVLALG
                     GRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
BASE COUNT         4084 a         1815 c         2177 g         4716 t
ORIGIN      
        1 ttttttaagt tttttaaaaa aaccaatatt ttttattttt tgtaacttta agaaattgta
       61 agttgaaatt tgattttgaa tagttagtat tttaagttga atgattataa ttttaaataa
      121 tggtgcggtt agcgagattt gaactcgcac acgcggagcg caccaccccc tcaagatggc
      181 gtgtctacca attccaccat aaccgcatag aaaaaagccc aaaaagggct ttgataagtt
      241 ttattgtaaa actataaaag gatttgcgta aagtgctatt agcgcgataa caagagcata
      301 gataacttgt gcttcaatca tcgctaaagc gataaacata gttgtcatta attttggccc
      361 aagaccaggg tttctagctg ttcctgcaat tgttgccgct gcagtattac ccataccgat
      421 agcaccacca agtgctgcaa caccaagacc taagcctgct gcaagaactg aaaatgcttt
      481 aatccataca ttaatagctt cttgctctac tggagcatta gtttcagctg caaaagctac
      541 tgctgtacat gctaataata aaaaaagaac ttttttcatt atcttaacct ttctataaaa
      601 aaattttttt caatttttaa atcagttcgg cttgcgtatc cctacttaag acttaaaaat
      661 aaattcgaat tataaccaaa agtatcttta tttttattga aatttacaaa aattcacatt
      721 tttgatttaa atttgattgt tttcaataaa gcttaaaagt ttttttgctt taataatatt
      781 ttaaaataat ttttaagtca aggttgtaac attgagttct aaattttcaa aaataggttt
      841 cattttagcg gtagcaggtt cagcggtggg cttgggtaat gcttggaaat ttccaacact
      901 agtaggtcaa agtggtggat ctgcttttat cttgctttat ataattctta ctttaggtgt
      961 aggttttgtg atatttttag ctgagcttag cataggaaaa attagtgaaa aagatccggt
     1021 taatgcctat gaaaagttag caccttcaaa taaaaaagct tggtcttatg ttggttttac
     1081 tatggtgggg gcgattttaa tagtttcttt ttataccttg gtgattggct ggatagttaa
     1141 atatgtgttt ttaagtatca ctggaaattt gcctatggat ctagaagtaa gtaaagcaca
     1201 gtttggattt tttataagtg aggatttttt aagtcagttt atttgtttta ctttggtttt
     1261 tttatgtgtt ttttatattg tttctaaagg tgttaagaat gggattgaaa agttaaatgt
     1321 ttggatgatg ccttcattgt ttattttgct tattttgatg cttgtttatg ctattagcaa
     1381 agatggtttt ataatggcgg ttaaatttct ttttgtacct gatttttcca aaatcaacac
     1441 ttcaaatgtt cttgaagcct taggacttgc tttttttagt ctttctttgg gcgttggaac
     1501 gattattact tattctgcta gtctgcctga taaaaccaat tttattacca gtactttaaa
     1561 tattattttt atcaatcttt tagttggttt attaatgggt ttggttgttt ttacttttat
     1621 ctttgagttt ggttacaatc ctaatcagca aggaccagga cttgttttta tttccttagc
     1681 tactttattt gaaaaaattg gagtgattgg ttgtattttt ggagcagcgt tttttatttc
     1741 tttaatcttt gctggtatta cttcagctgt ttcaatgata gagcctttca ctttttacct
     1801 tattaatact tttggtatga gccgtaaaaa agctttgatt ttaataggaa ttgttgttta
     1861 tattttagga atgttgtgta ttttatcttc tttaaaaagt actcagtttg gattttttgg
     1921 aatgagtttt tttgatttgc ttgatagtgt ttcaagcaag gttattatgc ctttaggtgg
     1981 aattttggca gctatttttg tgggatttgt gatgaaaaaa gaagctttaa aaattttatt
     2041 taaaccttat atgaggggta tattttttga attttggtat gtgtttttga gatttatttc
     2101 ccctttggct gttgttatag ttatgatagc cgctttttta aagtgagttt gaaaaataat
     2161 gagaacatat ttttcaaaaa tcggttttgt attgactgtt gctggtggag ccgttggttt
     2221 aggtaatgct tggaaatttc caactttaag cgcagaaaat ggtggttttg tttttgtgct
     2281 tttatatttg ttttttactt taactatagg atttagtatt tttttggctg aagtggctat
     2341 gggacgttta agtaaaagtg atcttgcaaa tgcttattca aatcttgcca taaaatatgg
     2401 caatagatgg cgatatggcg gcgtttttat gttaggtggt atttttgtcc tctcttttta
     2461 tctagttatc atgggatggg ttttaaaata tactgtagtg agtctttatt atcttcctaa
     2521 aactttagat gaagcagcaa gtaattttca gaatttaatt actacaaatt tgacaagttc
     2581 tgtttttttc ttcactttat ctttttttct tactttattg atagtatcta aaggtttaat
     2641 caaagggatt gaaaaattaa acgttgttat aatgcctagc ttatttttaa tgcttgtttt
     2701 tatgttgttt tattgcatgg gatttaagca aggttttgca aatgcttttt cttatttatt
     2761 ttatcccgat tttttacatt ttaaattcag ctctattgcc gaagctttag ggcttgcatt
     2821 ttttacctta tgcttgggaa taggttgtat agttacatat tcatcggcct tggataaaaa
     2881 aacaaatttt ataaaaagtt cagtgtatat tgttttgatt aatttattga tttcttttat
     2941 catgggactt attgttttta cttttatctt tgaatttgga gccgatccgc atactcaagg
     3001 agtaggaatt gtttttatat ccttgatgag tttgtttaat caacttggag ctttaggcta
     3061 tatttttgca ttttgttttt tcttagcact tttttttgct ggtattactt cagctgtttc
     3121 aatgatagag cctttaactt tttatatgat taataactat caaatttctc gtgttaaagc
     3181 tctattttta ataggtttat ttgtttttgt ttttggaatt tgttgtatct tgtcattaaa
     3241 tttaaatttt ttttctatgt ttagtttttt tggtaaagat ttttttactt tattagataa
     3301 attaacttca aattttttac ttccacttgg tgctatagta tgctctatat ttgtaggttt
     3361 ttttatgaat aaaaaacaaa tttataaaat tttttctaaa tttataagtc gaaaaatttt
     3421 cttaatttgg ttgtttttta ttcgttttat atcgcctata gcaataattt tggtaatgtg
     3481 ttatcaaatt tttgtataat aatgaaaaaa tattttttta aggaaaaata atggctaaaa
     3541 aattcatcga tgtaatggat acaagcttta gggacggttt tcagtctgtt tatggagcta
     3601 gggttttaat ggatgatttt tttcctgcag tagaagcagc aaaagaagcg ggtattactc
     3661 attttgaatt tggtggtggt gctagatttc aaagcttgta tttttatctt aatgaagatg
     3721 cttttaccat gatggataga tttagggcta ttgtaggaaa agatgctaat cttcaaactt
     3781 tagcaagagg ggttaatact gttactttag atactggaag tagtgagctt attgatttgc
     3841 atgcaaaact ttttgcaaaa cacggtacca caacgataag aaattttgat gctcttaatg
     3901 atataaataa tttaaaattt agtggtgaat gtatagcaaa acatggatta aaacatgaaa
     3961 tcgctattac cttaatggat ctaccgccaa attgcaaagg tgctcatgat gtgccttttt
     4021 atgaaaaaat tttgaaagaa attttagcag cagaaattcc ttttcacagc atttgtttta
     4081 aagatgcaag tggaacttca aatccaaata aaatttatga aaccattaaa atggcaagaa
     4141 aaattttacc tcaagatatg catattagac ttcatacgca tgaaactgca ggggtgagta
     4201 tagcctgcta tcttgcagca cttgaagcag gtgttgatgg tatcgatttg gctgcagctc
     4261 ctgtaagtgg tggaacttct cagcctgata ttttaaccat gatgcatgcc ttaaaaggta
     4321 aagattatga tttaggtgga cttgaagaag aaaaaattct aaaatacgaa gaagttttaa
     4381 aagattgttt aaaagagtat tttttacccc ctgaagctac tatggtaaat ccacttattc
     4441 ctttttctcc tatgccagga ggagctttaa cggcaaatac acaaatgatg agggataata
     4501 atattttaga taaatttcca caggtcattc atgctatgag agaagttgta gaaaaaggtg
     4561 gatttggtac ttcggttact ccagtttctc aattttattt tcaacaagca tttaataatg
     4621 ttatgtttgg gtcttggaaa aaaatcgcag aaggttatgg aaaaatggtg cttggttatt
     4681 ttggaaaaac tccagttgca cccgatgcaa acattattga gcttgcttca aaacaactta
     4741 atttagaacc tactacagag cttgctataa atatagctga taaagatgag agtaaaagta
     4801 tagcttatac caaaaccttg cttgaaaaag agggtataga aacgagtgaa gaaaatatat
     4861 ttgttgcagc agcttgcaaa gaaaaaggta tagcattttt aaaaggagag gcaaaggtaa
     4921 atatacgcaa attagccagt atgccaaaac ctatgagtgc agatgaaaac aaatttaccg
     4981 tagctgtaaa tggtaataaa tatcatgtag aagtaagcta tggctttgat aaagatgtta
     5041 atgttaaaag tgtgaaaaaa gtagaagaaa ataaaaatat tatttcttca aattcaacaa
     5101 gttctgtaga tgctgaaaat gaagttttag caggtatttc aggtaatgtc tttaaaattt
     5161 atgttaacga aggcgaagaa gtaaaatcag gtcaagctat catggtttta gaagcaatga
     5221 agatggagat tgaggttaat gccccaaaag atggaattat tttagagctt tgtattaaaa
     5281 taggtgatac tgttaatgaa ggcgaagtat tagctattta caagaattaa agtgagggaa
     5341 aaatgaaaaa atttgataag ttaggtttgg ataatataaa ggaaattttt cataatttaa
     5401 gttatgatga attaaatgct catgaaaaag caaataatga aggtttaagc acggataatg
     5461 atactttttg tgtagataca gggattttta caggtagaag tcctaaagat aaatattttg
     5521 taaaacaaga tccatctagt aaatatatag cttggggaaa ggtaaatcag cctattacaa
     5581 aagaattatt tgataaactt ttaactaaag caaagcaaga attaagcgga aagaaaattt
     5641 atgttcaaga tgttttttgc ggtgcttctt tgcaaagtcg caaagcagta agatttgtta
     5701 ctgaaattgc atggcaagcg cattttgtta aaaatatgtt tattcgccca agtcaagagg
     5761 aacttgagaa ttttaaagca gattttattg tttataatgc ttgcaaatgc atcaatgaag
     5821 attacaaaca agatggttta aattcagagg tttttgtgat ctttaatgtt gaagaaaata
     5881 tagcggttat tggtggaact tggtatggtg gagaaatgaa aaaaggtatt ttttctatga
     5941 tgaattattg gttaccacta gaaaataaac tttctatgca ttgtagtgca aatgtcggag
     6001 aaaaagacga tgtggcactt ttctttggac ttagcggtac aggaaaaact acgctttcaa
     6061 ccgatccaaa aagaagactc ataggtgatg atgagcatgg ctgggatgat gaaggtgtgt
     6121 ttaattttga gggcggttgc tatgcaaaaa caatcaatct tgatcctgaa catgagcctg
     6181 aaatttatgg agctattaaa agaaatgcac ttttagaaaa tgtagtttta agagctgata
     6241 agagtgttga ttatgctgat gcctcaaaaa cagaaaacac gagagtttct tatcctatag
     6301 agcatattga aaatcatgag cctagtctaa aagcagggca tccaaaaaat attatatttt
     6361 taagtgcaga tgcttttgga attttacccc cggtaagcaa actaagcaaa gagcaggcta
     6421 tgtattattt tttaagtggc tatacagcaa aagtagctgg aactgagcgc ggtataacag
     6481 agcctcaagc aactttttca gcttgttttg gagaaccttt tatgccttta catccaacgg
     6541 tttatgcgag attgcttggt gaaaagattg aaaaacatga agttaatgtt tatcttgtta
     6601 atacgggttg gagtggcgga agctacggtg tgggtaaaag aatgagcatt aaggctacta
     6661 gggcttgcat taatgccatt ctagatggaa gtattacaaa atgcgaattt gaaaattttg
     6721 aagtgtttga tttagctatt ccaaaagctt tagaaggtgt agaaagtgta cttttaaatc
     6781 ctataaatac ttggttagat aaaaatgctt atattgcaac aagagataaa ttagcacata
     6841 tgtttataca aaattttaaa cgttatgaag atgtcaaaga aggcattgaa tttagcaaat
     6901 ttggaccaaa aatttaaggc atttaaatga aaaatgaaat gtggtcagga cgttttagtg
     6961 gtgcaagtga tgagctttta aaagaattta atgcaagttt aaatgtagat aaaactttgt
     7021 tcaatgaaga tatacaaggt tctatagcac acgctacaat gcttgaaagt tgtggtattt
     7081 taaaaaaaga agaattagat gctattataa aaggtttaga gcaggttaga agtgaaatag
     7141 agcaaggtaa atttattttt gatattaaag atgaagatat tcatatggct gtagaaaagc
     7201 gtttaagcga gattataggt agtgaaattg gcggaagact acatactgca agaagtagaa
     7261 atgaccaagt ggctactgat tttaaacttt ttgtaaaaaa atctcatatt gaactcataa
     7321 agcttttaaa agaattgatt caaaccatgc tcgaacatgc taaagtgcat aaaaaaacta
     7381 ttatgccaag ttttacacat ttacagcacg ctcagcctgt gagtttttct ttttatattt
     7441 tagcttatgc ttttatgtta atgcgagata ttaagcgttt gcaaaatagc ctagaacttg
     7501 cagacttttc accacttgga tcttgtgcat gtgcaggaac aagctatgct accaatcgtg
     7561 agttgagtgc taaaatttta ggatttaaag atattatgcc aaatgctatg gatggagtga
     7621 gtgataggga ttttgctctt gatttgcttt atgatatagc agttattttt acacacactt
     7681 caagactttg tgaggaaatg attttatttt caagctcaga attttctttt ataaccataa
     7741 gtgatagttt ttcaacggga agttctatta tgcctcagaa aaaaaatcct gatgtttgtg
     7801 agcttatacg tggaaaaaca gggcgtgttt atggaaattt gatttctctt ttaactataa
     7861 tgaaagcttt acctttagcc tataataaag atatgcaaga agataaagaa gggatttttg
     7921 atagtgtaaa aaccgctaaa gatagcttaa tcatcttaaa tgcaatgcta aaagaaatac
     7981 aaattaataa agaaaatatg cttaatgctt gtaaaaaagg tcatttattg gctaccgatt
     8041 tggcagatta tttggtgcgt gaaaaaaata ttccttttag aaaagcacat tttatagtgg
     8101 gaaatgttgt tgcacaagct gaagcacaag gtattgatat aagtgaaatt aaagatcttt
     8161 caaaaataga tcctgtattt gatgaaaaag ctatggaact tttaaatttt gaattttctt
     8221 taaattctaa gcaaagtgaa ggctcaagtt ctattgcaag cgtagaaaag caaattcaaa
     8281 ttttggaagg ttttattcaa aatttataaa tattgtttag gctattttgc ctaaacattg
     8341 aatttaaaat gcattacatc gccatctaaa acgatatagt cttttccttc aaggcgtagc
     8401 tttcctgctt ctttggcgcc attttcgcct ttgtattgga tataatcttc ataggaaata
     8461 acttcagctt ttataaagcc tttttcaaag tcattgtgaa ttacacttgc tgcttttggt
     8521 gctttccagc cttttttgat tgtccaagaa cgcacttcaa ctacaccagc ggtaaaataa
     8581 ctgatcagtc caagcttagc aaaagcagtg cgtatgattt gatcaagacc gctttcgtta
     8641 actcctagag aacttaaaaa ttcatgactt tcttcatcgc ttaatcctac taattcttct
     8701 tcgatttttg cacaaagctt gataacttca tgatcatttt ttttagcata ttcttttaaa
     8761 gcttttacat aatcattatc ttcactaata ccattttcat caacatttgc accataaatc
     8821 acttctttag cagaaagcag tcttaattct ttgattaagg cttgataaat ttcactttct
     8881 ttttcagggt aagaacttgc agctaagcct ttgtttaaat gatcaagtaa ggaatttgca
     8941 agttcgagac tttctttagc acccttttga ttggctttgg cttctttggt gagtttttct
     9001 atttttttac tcagttgttc aatatctgct aaaataagct ctgtattgat aatttctaca
     9061 tcacgtaaag gatcaactcc accttcaaca tgggtaatat tttcttcatc aaaacaacgt
     9121 actatatgca aaataacctc agtttcacgt atatttgaaa gaaatttatt tcccaagcct
     9181 tcgcctttac ttgcgccttt aacaagtcca gcgatatcta caaattctat taaagaatgc
     9241 ataattcttt caggttttac tattttagca agttcattaa gtcttaaatc aggaacttca
     9301 accatggctt tattaggctc tatggtgcag aaaggatagt ttgcactttg ggcattttgt
     9361 gctttagtta aagcattaaa agttgttgat ttgccaacat ttggaagtcc tactatacct
     9421 acgcttaaac tcatttagct ttccttaaaa tttgaattaa ataattaaca cacattctaa
     9481 ctccagctcc acctgcgcca aaactagaat atccccaaga tttttctgta taagcaggtc
     9541 ctgctatatc aagatgtagc catttatctt tatattcttt acgaataaat ttatctaaaa
     9601 ataaccctgc ggtaattgca cctccgtagc gactagaggc agtattacta acatcggcaa
     9661 tatttgattt tataagttct cttaagtgag ggttgaaatg taagattgtg gtatattctc
     9721 cgcttttttt agagcttaga taaaaatcat tttgcaattc ctcattattt cccataatag
     9781 cgcttgtaaa ttctccaagt cctacaacac aagctccagt aagagttgcc atatcgataa
     9841 gtaaatcagg ttttaaatcc tgtgcaaaag aaagacaatc agctaaaacc aagcgtcctt
     9901 ctgcatctgt atttcttact tctatgctta caccttcacg actgattaac acatcatcag
     9961 gcttataagc attgccgcct atcatatttt cagttgcgcc caaaatgcaa tgcacttcta
    10021 aatctaaagc aagttcagct acggctttta tgattcccat tgctgctgct gcaccgcttt
    10081 tatcagcttt cattgtaagc ataaaatcag ctggttttaa gcttaatcca ccgctatcgt
    10141 aagttaagcc ttttccaaca aatacaacac gtttttttgc atttttggct ttatagctta
    10201 gatgaatgag gcgtggtggg tgtaccgagg catgatttac cgctaaaaag gcattcattt
    10261 tttctttggc taaaaatttt tcatcataaa ttttacaaat aatgttttta ttttctttag
    10321 ctaaattttg cgcatcttct gccattttta aaggggtgta aatttcagga atttcattga
    10381 ctatattttt agtaaaattt gtagcattgg ctaaaatttc tccacgctct aaacctatct
    10441 tagcttcatc tttattaaat ttcttaccat ttaattcttc gtttgaaata ataaattttt
    10501 ccaaagtact tgtttttttc tcgcttttat atttgtcaaa tttataagct ccaaaaagta
    10561 cgccttcaac taaagatgca aaacttctaa ctacacaatc tcctattatg ctaggaagtt
    10621 ttacgctttt aatattaagt ttctcaagag ttttatatgc tgtgcaaaga cttaatctta
    10681 tatcctcata agcaagactt ttaagctcta aataaagctt tttattgttt aagtctaata
    10741 atgcaccttc gcctttgtaa ttattaagtt taaaaaaatc tttttctttg ttaaaaattt
    10801 ttaaattttt atcctgtata aaaacaagtt caaagtctgc ttttatagca tctagttttt
    10861 tatcgtttaa ttcaaatttc atgatttttt ccttttatct ttaagtatag ctttttccat
    10921 ttgtttaaaa ccaaataata aaagggataa aaaagctata ataataatgg ctgcataata
    10981 ccaatgttct tcagcccaag tcaccatctt ccaaatttgt tctccaaaat accaagctaa
    11041 aagtatagtg attgatgccc aaacccaagc actaaaaaga ttgataatag caaatttttt
    11101 tgcactataa cgcgtgattc ctatactcat aggtataatg gttctaaagc catacatata
    11161 gcgttgtata aaaataatag gccaaccaaa acgttgtaaa agtaggtgtg ctactgcaaa
    11221 tttacgcctt tgagttttta attttttttg tatgtagcat ttattatatc ttcctatata
    11281 gaagtaaatt tgatcgccta caaaaccgcc aagacctgct ataaatataa caaagcctaa
    11341 atttacatgt ccttgatggg caaaaatacc agctaaaatt aaagctaact ctccttctaa
    11401 aatgcaccat aaaaaaataa taatataagc tagatctttg tattggtaaa gtaaattttt
    11461 taaaaattct tccatttgta cctttctata gttttaaatt tctaaaacac tataaactga
    11521 agtaagtttt tcaagtttat ttgctccatt taaatcttta agatttatta aaaaacaagc
    11581 ttcaacacat tttgctccag ctttttgaat gagttcatat gaagctatag ctgttccgcc
    11641 agttgctatt aaatcatcta caagtaaaac tcttgcattt tgaatatttt taaatgcatc
    11701 tttatgaagt tctactttat cgctgccata ttcaagatcg tattcgcagc taaaggtttc
    11761 aaaagggagt tttccaggtt ttctaatagg cacaaaagga agattaagtt ttgcacaaat
    11821 catagatgca aagataaatc ctctgctttc tgttcctgct atgaagtcta gattgtaatt
    11881 tttgtagcgt tcttttaaat gtttaagtag aaaatttaaa gcctctttgt tatttagtag
    11941 agtggtaata tctctaaaaa taattccttt ttttggaaaa tcaggaataa tcctaatgct
    12001 atcaagcagg tatttttgtt cttcttgtgt tagttttatc ataataatgc ctcaattttt
    12061 gcttctaatt ctttaattct ttgtcttagt ttgtcatttt ccaagcgata ttgagaattt
    12121 ctggttctta aagatgtaag gtctgctttg attttattaa gttcttctgt gagtatatct
    12181 atatttccaa gacttctttg aagttgaatt tgtagttttc taatgacaat ctcagtatca
    12241 tcaagattgt ttttgataaa atcttttgat gttttttctt tattaagtag agttttatag
    12301 taaaacaaca ttacaataag atagatagtt gcacaaatca atatagttaa aacaagccag
    12361 tttgtaaaca ttatattttt acctcaattt tttgaattct ttgcatatgt ctcccttctt
    12421 caaaaggagt ttgaatgaat ttttctataa tatctatagc taattcaacc ccaattaatc
    12481 ttccgcctaa tgccaaaaca ttggcatcat tatgccttct tgcaagttct gcacttaagc
    12541 tttcgtggca taatgcacaa cgaatgtttt tatgacgatt tgctgcaata gaaattccaa
    12601 ttccacttcc acaaataaga atgccaaagc tccgtttgtt tattttttcg gcaagtaaat
    12661 gcgcataatc aggataatcg cagcttgcgc aagtgtttgt tcctaaatcg ttaaaaatta
    12721 tatttttttc ttttaaaaat acgcaaattt tttcttttaa ttcaaaacca gcatgatcac
    12781 tagcaatata aa
//
LOCUS       DARBAR010000044        12602 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.044, whole genome shotgun sequence.
ACCESSION   DARBAR010000044 DARBAR010000000
VERSION     DARBAR010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12602
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.044"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            31..912
                     /locus_tag="SB815_000911"
     CDS             31..912
                     /locus_tag="SB815_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEG0906654.1"
                     /translation="MKIKDIEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFD
                     GILFERLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISE
                     HFLAPILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLE
                     INFWQDDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLN
                     IFLELDRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNIDLKRKFYTLKRK
                     NYNFNRALEKFEKIFKS"
     gene            992..2860
                     /gene="rpoD"
                     /locus_tag="SB815_000912"
     CDS             992..2860
                     /gene="rpoD"
                     /locus_tag="SB815_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEG0906655.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTTKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(2876..3388)
                     /locus_tag="SB815_000913"
     CDS             complement(2876..3388)
                     /locus_tag="SB815_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEG0906656.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(3385..3903)
                     /locus_tag="SB815_000914"
     CDS             complement(3385..3903)
                     /locus_tag="SB815_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEG0906657.1"
                     /translation="MLTIFLIFLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMF
                     LHGNLTHLILNMIVLFQFGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFG
                     ENINVIGASGAICVLMGFYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFM
                     CGYILAKIKEVK"
     gene            4002..4418
                     /locus_tag="SB815_000915"
     CDS             4002..4418
                     /locus_tag="SB815_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG0906658.1"
                     /translation="MKIKFLNIITILSLSLNADIIISADNLPNVSKEFLQHNFKAPIG
                     IVQKDKNSYEVYLSDGTELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKNEFPNTK
                     AREIERKINHYKIKLDNDIKILIDFNGTILYKEFDD"
     gene            complement(4427..6043)
                     /locus_tag="SB815_000916"
     CDS             complement(4427..6043)
                     /locus_tag="SB815_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEG0906659.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLSKVPVEVKKDNTLWVFFVLLIFIIAL
                     FISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNNEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKESNLSEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEYDDVKDIMQV"
     gene            complement(6047..7297)
                     /gene="mtaB"
                     /locus_tag="SB815_000917"
     CDS             complement(6047..7297)
                     /gene="mtaB"
                     /locus_tag="SB815_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HEG0906660.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTTLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEVQEKSNFTNLKG"
     gene            complement(7294..8865)
                     /locus_tag="SB815_000918"
     CDS             complement(7294..8865)
                     /locus_tag="SB815_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HEG0906661.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLNLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVELKPSVENIEALKASDKKLEEFEQALNFASVSYSVYEKKIDEELSRVSAEIKVQ
                     SLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRVKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIAYPSQNLYLGNLNQNHF
                     EQHHENMYFHARNKD"
     gene            complement(8862..9917)
                     /locus_tag="SB815_000919"
     CDS             complement(8862..9917)
                     /locus_tag="SB815_000919"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEG0906662.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLK
                     TLSSRELAAGMAEFIKMAAMFDYSILDFIEKIDEKSFLNATCENEIFTQIIAKSIELK
                     SRVVEQDEKESRLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGL
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            complement(9963..11363)
                     /locus_tag="SB815_000920"
     CDS             complement(9963..11363)
                     /locus_tag="SB815_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HEG0906663.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISMWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFARNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            11393..12514
                     /gene="tgt"
                     /locus_tag="SB815_000921"
     CDS             11393..12514
                     /gene="tgt"
                     /locus_tag="SB815_000921"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEG0906664.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAITYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDSTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            12516..>12602
                     /locus_tag="SB815_000922"
     CDS             12516..>12602
                     /locus_tag="SB815_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEG0906665.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKI"
BASE COUNT         4712 a         2053 c         1570 g         4267 t
ORIGIN      
        1 aatttttttt attaaataaa ggaatcactc atgaaaatca aagatataga aatattttta
       61 gatcttttaa acactcaaag tccaactcat acagccaaca atttttccat aactcaacct
      121 aatgtttcaa tagtaattaa aaatttagaa aataaatttg atggcatttt atttgaaaga
      181 cttggaaaaa aactcttacc tacaccaaaa gctttagaac taggaaaaaa ttggttaaaa
      241 attatacaag cctactacca aagcttagaa aaattaaacg acgaaagtat gctcttaggg
      301 gaaataaaaa tagcctcaac tcaaagcatt tctgaacatt ttttagctcc tattttattt
      361 gattttaagg cagaatttaa aaacatagaa attcgctctc aaacgcagaa ttcaaaagaa
      421 tgtttaaatt tactaaaaaa cggaaatata gaatttgcaa tcattgaagc agaacttgat
      481 ccagctttag tggagtatga aaatttagaa ataaattttt ggcaagatga tgaacttata
      541 gtagctacaa gtgataaaaa actcaatgaa aaagaatttt atatcgatga acttttggaa
      601 caaaagtgga ttttaagaga agtaggctca ggcttaaggg ataaattttt aaacgaaatt
      661 ggtgcaagct caaaaaaact taatattttt cttgaacttg atagaatggc tgcgattaaa
      721 gaacttgttt tacaaaaaaa agcaatctct attttttcca aaaaaagcat agaaaaagaa
      781 ttaaaaaatt caacacttta tgaaattaaa ttaaaaaata tcgacctaaa gcgtaaattt
      841 tataccttaa aaagaaaaaa ttataatttt aacagagctt tagaaaaatt tgaaaaaata
      901 ttcaaatcat aaacataata accgatttat atagaaagtt aagcaatttt tagataaaat
      961 ccaaagctta tataaatttc aaggataatc aatgaacgcc aaaactcaag aagctgaatt
     1021 agaagaatta tttcaagaaa atgcaaaaga ttatatcaca tatgaaaaat tggtaaaata
     1081 tcttacaaaa caaccaagtg catcaaccac taaaaaagtg caagcattaa tgaaaaaaca
     1141 caaagtgcaa cttttttcag cagctgaaat tgcacaaatg aaaaacatag aagatgcaaa
     1201 aagacttcaa gaagaaaaac aaaaactcca agatacaagc cttgagaacg aatttgattt
     1261 agccaatgaa aacgatttat tagaatggag cagatcagac tctcctgttc gtatgtattt
     1321 aagagaaatg ggacaaattg ctttattaaa caaagatgaa gaaattgaaa tttccaaaaa
     1381 aatagaactt ggcgaagata ttatcattga tgctttttgt tctgtacctt atttgataga
     1441 ttttatttta gattataaag aacctttaat aaacagagaa agaagggtaa aagaactatt
     1501 taaaagcttt gacgatgaag aaaaaagtga tgacaaactt gatgaacttg atatagatga
     1561 agatgaagaa aacgaaacag aattagaatc agatgaagaa aatactaaaa aaaacagcaa
     1621 aaaagaagat gaaagaactt taaaagttat agaaaaattt aaagctctag aaaaagctaa
     1681 aaaagattgg ctaaaaacat ccaaagacaa agaaagcgga gatgaacttt tagataaatt
     1741 aagcattgcg ttcaaaaaaa atattttaaa agaaaaatta atggatctag gccctacttc
     1801 aaaacttatt agcgaaatcg taaaatcaat ggaaactgca ctaaaaagtg atgaagaatt
     1861 tgacaaagaa cttaagcgtt tagaataccg cttacctatg ttttctgatg aacttaaaaa
     1921 acgccatgca gatattttaa aagatattac aaaattgagc aaagaagaaa tcacagagcg
     1981 agctttagaa acaaccatgg taagcactta tatggaaatt aaaaaactat ttcaaactaa
     2041 agaagccagt gaaaaaagct ttgatcttga aaaatcacgc ttaaaagaaa ttttggagca
     2101 aattaaacgc ggtaaaaaaa tctctgatga agcaaaagga agaatggcaa aatcaaactt
     2161 gcgccttgtt gtaagcatag ctaaacgcta cacaaatcgt ggtctgcctt tcttagacct
     2221 tatccaagaa ggaaatatag gtttgatgaa agctgtggat aaatttgaat acaaaagggg
     2281 ttataaattt tccacttatg caacttggtg gatcaggcaa gctatttcaa gggctatagc
     2341 tgatcaagca agaaccataa gaattccaat ccatatgata gaaaccatca atcaaattaa
     2401 caaaattatc cgcgaacatc tacaaaaaga tggaaaagaa cctgatgtca gtgttatagc
     2461 taaagaagta ggtttaagcg tagataaggt taaacaagtt attaaaatca caaaagaacc
     2521 aatttctctt gaagctccaa taggaaatga agatgatggt aaatttggag attttgttga
     2581 agatagaaat tcactttctc caatggatca tatcttaaag gatgatttaa aagaacaaat
     2641 tgatgaagtt ttagatcaat taaacgatag agaaaaagcg gtaattcgta tgcgttttgg
     2701 tttaatggat gatgaaagtg atagaacttt agaggaaatt ggaaaggaac ttaatgtcac
     2761 tcgagaaaga gtgagacaaa tagaaagctc agctataaaa aaactcaaac accctaaagt
     2821 aggaagaaaa ctaaaaaatt atatagaagg ttggaagtaa gagtcaatct ccttactaaa
     2881 aacccagatc tttttcttct tttaacttgc gtacatgttc aaaaaaaact aattttccgc
     2941 tatgtttttt taaattttta aattccttaa tatcaaattc taaacacaag atagaagaag
     3001 ttggaaaaga agctaaacat agcgaactta ataactctcc aagctccatt aaactaggat
     3061 tatgacccac taaaaatact tcattaaact catcatcaat atcttgcaga atttttagca
     3121 aattttcaac attgcaaaga tacaatcttt catcaaaaca aattctattt ttatcaaaat
     3181 tataaaattt ggctattttt ttcgctgttt tagcggttct aacagcagga cttgatagca
     3241 ccaaatcagg atgaatttca tgcgaagcaa gatttttaaa aagttttttt aaatcttcct
     3301 ttccactctt agtaagtttt ctttcaaaat catcgatgtc ttcactctta cttgcttttg
     3361 catgtcttat aatataaatt tttttcattt tacctctttt attttagcta aaatataacc
     3421 acacataaac ccgaaaatat gaccatacca agcaacattt acccccataa gcaatggcac
     3481 aaaactcata agtaaaattg ccactataag tccttttgtg ctatttttat caataacagc
     3541 ataaaagccc attaaaacac aaattgcacc actagcgcct atgacattta tattttctcc
     3601 aaaatattta aaatcaaaat acacataaaa aacacttaaa agtgagcaca acaatccgcc
     3661 aataaaataa ataaaaataa aacacaaagc acccaaataa gtttctaaca tacgcccaaa
     3721 ttgaaacaaa actatcatat ttaatataag atgagttaaa tttccatgta aaaacattga
     3781 acttaaaagc tgccaataag ctccattaaa aaataaaata ttcaaaccaa ggatattgta
     3841 ataatcataa gaaatcaaaa aataacataa aatatttaaa aaaattaaaa aaattgtaag
     3901 caaaatataa aacctttatt ttttataata ttgtcttaaa attcacataa aattcacata
     3961 aattctttac aattttacta aaaaataatt taggaaaaat attgaaaatt aaatttttaa
     4021 atattattac tattttaagc ttatctttaa atgctgatat aataatttct gctgataatt
     4081 taccgaatgt ttctaaagaa tttttacaac ataatttcaa agcgcctata gggatcgtgc
     4141 aaaaagacaa aaattcctat gaagtctatc ttagcgatgg aacagagctt gaatttgata
     4201 tagatggagc ttggaaggaa attgaaaata aagcctttcc ttttgatcta gattttttac
     4261 ctcaaaattt agccaatatc atcaaaaacg aatttccaaa tacaaaagct agagaaattg
     4321 aaagaaaaat caaccattat aagattaaac ttgataacga tataaaaatt cttatagatt
     4381 ttaatggaac tatcttatat aaagaatttg atgattaaac atatcatcaa acctgcatta
     4441 tatctttaac atcgtcatat tctatctttt ctttttcaag caaaagctct gataatttta
     4501 aaattttatc cttcatagaa tttaaaaatt catccatttc ttttttttgt tcacttaaat
     4561 ttgactcttt caacatatca aaactcaaca tataatcaag caattcttta atctttaaaa
     4621 aatcatcttg cgagttagta taactttcat tgtaaatcaa tctcatggct ctagaaccag
     4681 ccaaataaac ttttatacga ttgataagct ctgattttga tcttatatta tgctcatatt
     4741 ctttaaaacg atcttcaatg agagtgattt tttcaaatcc tatgtcaaaa taatacgcac
     4801 tcaaagcttt tgcagcttga taagtggctt gaattttctt ctcttcatta ttaaaactta
     4861 aaatcttttt cttacctaaa agaactttat ttaatacagc ataaaaatcg ctttcctcaa
     4921 ctaaagcact atttcttctt aaagcattaa ttgctgcttc attgaccaaa gtttcaagcc
     4981 ctgctccact aaaacctacg cttgctttag cgattttatt taaattgata ttattgtttt
     5041 tatctttcat ataaatttct aaaattttaa gtctatcctt aaaatcaggc aaagataaaa
     5101 aaattctcct atcaaaacgc cccgaacgca ataaagcagg atccataagt tcgattttat
     5161 ttgtcgcagc tataactata accccgctat tgtcctcaaa accatccatt tgagttaaaa
     5221 gttgatttaa agtgctatct ctttcaacat ttgacatttc tcctcttgcc ttacctacgg
     5281 catctatttc atcaataaaa actatgctag gcgccatcat tttagctttt gaaaaaagct
     5341 ctctaactct ttttgcaccc atacctacat aaatttcaac aaaacttgaa ccactttgat
     5401 aaaaaaatgg cacccctgct tctcctgcaa ctgcttttgc tatcaatgtt tttcctacac
     5461 caggtgggcc taccattaaa acaccttttg gcatttttac accaaattct ttatattttt
     5521 taggattttg taaaaaatcc acaagttcgc ttagctccat tttaacttca tcaacacctg
     5581 ctacatcatt aaaagtaata tttgaaatca caggttttat atgggaactt tctaaattta
     5641 tatttgaatt ttgagcttga gtgtgatttt gattcttatt tgatattgga tatttagcca
     5701 actctttttt acgagcaaaa taaccaagac ttataaaaag tgcgataata aaaataagta
     5761 aaacaaaaaa cacccaaagc gtattatctt ttttaacctc tacgggaact tttgataaaa
     5821 gtgtttttat atctatgcca tcttttataa ttacgtaatt ttcaccttct gccttaagcc
     5881 aaatttcgtc tttatcaatc acagcttttt ggattaaatt ttggcttaat agactttgat
     5941 aaagattttc atctatatat ttaggttcat ttttaaaata taaaattccc aaaagcatac
     6001 ataaaaccat aaaagatgct aaaattatct ttttattttt cattatctag ccttttaaat
     6061 ttgtaaagtt agacttttct tgtacttcat attcagatat aacgatccat tctttagcta
     6121 tatctttatc acttttaatt ttgatcttat taaaaaactg atcataaccc tcaaaaaaac
     6181 catctttttg attttctacc aaaacttcaa gtgaaacttg attttttttc ctaaattcat
     6241 aattattttt ttctactatg gattttaaag tgtttagcct ttctttagct aaagttccat
     6301 ttatcacatc tttcatggta gcagaatgcg tgttgtttct agggctaaaa ataaaagcat
     6361 ggatatgagt gagtggaaat tctttaaaat ttcttaaagc ttcttgccat agctcttcac
     6421 tctcgcctgg atgagctact ataaaatccg tccctaaagc atatcctttg cttgctatag
     6481 tattaaaaag ctttaaatca ttatccgtat gtgatcttct tctcattata cgaagcattt
     6541 tttcacttgt atgttgcaat gcaatatgca aatgcctttc aagccaagct tcatctaaga
     6601 tttctaaaaa actttcatca agctgtgcag gttctaaact acctagcctt atgcgtttta
     6661 tacctaaaat ttgtcccatt ttttgcaaaa gcttgcctag ggttgtgcca tttttaagcc
     6721 catatgaacc tatattagtc cctgttaaaa caatttcact ataaccatta gctcccaaaa
     6781 tttcaacctg ttttaaaaga gctttttcat ccacacttct tgattttccc ctcacgctag
     6841 gaataataca ataagaacaa gcaaaatcac aaccttcttg aattttcaca aaagctttgg
     6901 tatgattttc atactcacaa actatatctt tatcaataaa atttaaattt ccaagttcat
     6961 aaaaacttgt ctttgctcct aaaaattcat tgattttatc tttatttgac gctccaagca
     7021 ctccaaaaac ttgcttttta tctaaaagct ccttaccttt gcttacagca ccacaacctg
     7081 taagtataac tttaatgcct tttttttgca tggtatttac ataagacttt atcccgctat
     7141 cagctccatt tgtaaccgtg caagaattta caacgataat ttgtgcttta ttctcatcat
     7201 ttataatctc ataatctttt acataacttt ttaaaagctc tgtatcataa atatttgtgc
     7261 gacacccaaa ggttttaaaa aaaacttttt ctttcaatcc ttattccttg catgaaaata
     7321 catattttca tgatgttgtt caaaatgatt ttgatttaaa tttcctaaat ataaattttg
     7381 cgatggataa gcaattttta tatctttatg cttattaaat tcttttataa tctctttgct
     7441 aatcgtactt cttaatacca aagccgcata agcattagtc atataccatg cagaaattct
     7501 cattccccaa tgttcaaaaa acataaaaaa ccttggctcc actttaggat ttttaatact
     7561 atattcatgt tgtaaacgag ctatattttt tctagcaagc tcagtataac ctttggcatg
     7621 gcgtgtaaca atattttcca caatttcttg agctttgtca agattgctat caaaagtaac
     7681 acttatatca atgccatcaa gcacggtttt cataccatga tgggtataat tagcaagcaa
     7741 atttgtaaaa acatagttat taggaataaa tataatacgc ccactacgac gatttttatt
     7801 ataagtttca agcgtaagct cttcataaag agtaatgcgt aaaaaagaaa tgtctataat
     7861 atctcctata taggtagtat cattttgaaa aacttttaca cgatccccta ctctaaaact
     7921 tccgccaaaa ataatcacac accatccaag catagacata aacatatctt tcatagcaat
     7981 agctaagccc gcagaggcaa aaccaagtat agttacaaga taagtaatat tttctatata
     8041 agcaaagagc aaaataagaa aaataatatt tatattaata aaattaataa tcttcgtagc
     8101 agtataatat ctttcactat ccttaatgta ttttttagca ataaatttca acataaaagc
     8161 tatagctata acaataacaa tagcaacaag tatatttaca gcccttaagc tttgaacttt
     8221 aatctcagca cttactcgag aaagctcttc atcaattttt ttctcataaa cagaataaga
     8281 aacactagca aaatttaaag cttgctcaaa ttcttccagc tttttatccg aagcttttaa
     8341 agcttctata ttctcaacac ttggtttaag ctcaactaat tccttaagtt ctgagttttt
     8401 ttccctgatt ttatctacta aatttttaaa atcattaaat ttaaatatat actcttcctt
     8461 ttctcctttt aatttcttaa tatgagaaaa agctcctata atagccaaag gattagtaag
     8521 cttagataaa gtttctatat tatcaggggc actaagactt tgtgcaaaat ttaaatcttt
     8581 atattcttta agcaagttca attgctcttc taaatttgct atcttgcgtt taagttcttc
     8641 ttgttggtga atatcggaag tcttttttaa attaagattt aaaatgatta attcatcatt
     8701 tatatcttga tattttataa aattttcata acgtatattc caaatactag cactgattac
     8761 agtatttaaa gtattaattt tctcatttat attattaata atagtccgat ttacatcacc
     8821 aaaagcaaaa acaacaaaaa aggttaaaat aataattttt ttcattggaa ttctcttaaa
     8881 gttgcaatta tatcttcttt agaaatatca ccttttatca aacccttacc caaaggacta
     8941 gcaagaacaa aattgatttt tttattagag ctttttttat ccatgaaaaa agcttcataa
     9001 aattcatcta cattgttgat tttatatgat attggcaaac cgaatttaag taaaatatct
     9061 tttattcttt gactttgcat tttatccaaa agccctaaat ttaaagccaa ttgatttgcc
     9121 ataaccatac ctatagccac cgcttctccg tgtaaataaa gcttataatc tgtaaaattt
     9181 tctataacat gagcaaaagt atgaccataa tttaaaagca ttctaagcct tgattctttt
     9241 tcatcttgtt caacaaccct tgatttaagc tctatgcttt ttgctataat ctgagtaaaa
     9301 atttcattct cacaagtagc atttaagaaa cttttttcat caattttttc tataaaatca
     9361 agtatactat aatcaaacat tgctgccatt ttaataaatt cagccatgcc tgcagcaagt
     9421 tctctagagc tcaaagtctt taaaaaaaaa ctctcacaat atacagcttt aggttgataa
     9481 aaagtgccaa taagattttt accaaaatta ttattaacac ctgtttttcc acctactgct
     9541 gcatcaacac aagctaaaag tgtagtagga atatttataa aatcaatacc tctttgataa
     9601 atactagcag caaatccgcc catatcacta atcacgccac caccaaaact tataagtacg
     9661 ctttttctat ccaatttaga attaaacatt tggtttaaaa tttcttccat ggtgcttaaa
     9721 tttttatatt cttcaccatc tttcacagtg gcaataaaaa tttcttttgc cttaatttta
     9781 gaaagtaatg ttttcaaatg aagacctgaa atcttaggat ttgaaagtat aaaaacctta
     9841 ctatcaaatt ctaattcttc aagttcatca atataaacct tataagcatt ttcttttaac
     9901 ttaacttcta cttgcattga actactcttt ttgcatttat tttatcacat ttaattaatt
     9961 atttattcta ctggtatgaa aagttggtaa ttttgtctca ttttgtaata atgcctattt
    10021 aaatttgtac ttaaatttct ggcaaaatct ctatttagta attctttttg aaaactcaca
    10081 aattgtaaca aatcttcgcg atattgcaaa tttaaaagag ggttttcatc atttttatta
    10141 ataatttgta tatttttatc ataaagctta gataaacttc taaaatactc ctccatatct
    10201 gtagtatttt gagaatttgg attataataa tataaaataa ctccaaaatc aagctgttta
    10261 cttaaatcag taatgacatt tgcattgttt tcaagttcac tctcatcagc acttaaaata
    10321 atcgcttctt taagctcatc aaaagaagct tcacccacct tcataatagg aatttttaaa
    10381 tcaaaaaaag cttgtttttc tttctcaaaa ttttttatat cagttacaac taatcctata
    10441 tcattatttt gcaaccacat ggaaatttgt ttaaaatccg tgttgaaata atcaaaaaac
    10501 acaccttctt tatcctcaga aagttttttt aatttttcat acattacccc taatttagga
    10561 ttgataacat gtataaaaaa tctttttgca ttgctttttt gagttaattt taaagtagta
    10621 tcaagcactc tttcttgcat attttgattc atatttttca tatcaattaa agcaaaaaca
    10681 ttacttccaa aaggcatagg aaattgccct gctttgcctc ttatattatg aaaaatactt
    10741 tgtaaaacaa caggatcccc aacgatcaaa atgctatcat ttggctctag aacaaaagat
    10801 ggttttacaa aataaatttt agaatttcta taaataagga ctatgcgcca ccttttttgt
    10861 tgtattgaac ttatgtgcct ataagcaaaa atagaccctg ctggaatttt tacttccata
    10921 atctctccaa ctccaagtcc tatatactga gctgttaaag caatatctgg taaaaaatcc
    10981 ataaatctac ggcttaaagt cattctagca tcagctaaat ttgcatgagt atcattaaca
    11041 cttaaccccc aaaaatccat tatttctatt tctaaatttg gatttaaaga acgcaaagcc
    11101 tcgtaacttt ttttagtttc aaattcatct tgcatataaa taaaagcctg tttaaaatcc
    11161 ttactcataa tattttcaag acgcgctgtg cttgtaggat caaaataatg caagtcaata
    11221 tactcgctag aaatatttaa gttatttttt tcactatttt gacacactac tgtaaaaaag
    11281 taacctaagc ctttttcaaa acaaagcctt tctaagaaat gctttgctaa aataccatct
    11341 attataatta aaatattatt cattttaaac tccaaaaagg aaattataac aaatggaatt
    11401 taaattaaag cataaagatg gaatggcaag ggtttgtgaa atcactaccg cacacagcac
    11461 ttttttaacc cctgttttta tgcctgttgg cacagtagga gcggttaaaa gtcttgatgc
    11521 taatgatatg aaaaatgagc ttgatgcaaa aattatttta gcaaatacct atcacatgta
    11581 cttgcgtcca acttccaaag tagtaaaaga ttttggaggt ttacatggat ttacgaaatt
    11641 tgatagaagt tttttaaccg atagtggtgg ttttcaagct ttttctttaa gtaaaaattc
    11701 caaacatttt aatgaaggca tagaatttaa aagtcacatt gatggaagtc gtcatctttt
    11761 tactccaaaa agtgttttag atactcaata tgattttaat tctgatatta tgatgatttt
    11821 agatgattta gtagccctac ccgcaaccaa agaaagggtt aaaatttctg ttgatcgcac
    11881 tatactttgg gcaaaagagg ctattactta tcataaaaat atgcaaaata aaggtatagg
    11941 tatagggcaa aatatttttg gtattatcca aggtggtaca gattatgaag aaagaaagcg
    12001 ttgcgcttta agtttaaatg aaatgccatt tgatggttta gctataggtg ggcttagcgt
    12061 gggcgaagaa aacgccttga tgtacgaaac agtccaaaac ttaaaccctt atctagatga
    12121 aaatcgtcca agatatttaa tgggcgtagg aacgcctgaa gatttagtag aaaatgttga
    12181 gcgaggagta gatatgtttg actgtgtgat gccaactaga aatgcaagaa atggaacatt
    12241 tttcacaagt tttggaaaat ttaatatcaa aaaagcagaa tttatcaacg atcatgaagt
    12301 tatagattct acttgctcat gttatacttg tcgtaatttt tcaaggggtt atttaaacca
    12361 tctttttaaa gctaaagaac ttactttttt tcgtttggca agtctgcaca atctacatta
    12421 ttatcttgaa cttgcaagaa agatgcgtga agcaattttg aacaattctt ttacgcaatt
    12481 taaaagaaat ttttatcact taagaggcaa ataaaatgct agaactacac gaaaatctaa
    12541 aaaaaatcct acaagcaaag aatttagaaa ctttttatag tgaaatttat ggacaaaaaa
    12601 tt
//
LOCUS       DARBAR010000045        12583 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.045, whole genome shotgun sequence.
ACCESSION   DARBAR010000045 DARBAR010000000
VERSION     DARBAR010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12583
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.045"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..636
                     /locus_tag="SB815_000923"
     CDS             <1..636
                     /locus_tag="SB815_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEG0906666.1"
                     /translation="FLENLKKTQDLNPEDILLANELKLDLLSEIYVSRAALKLKKFLE
                     ENDIEIKHKNCLDIGSSTGGFVQILLENQALKITALDVGSNQLHPSLRVNEKIILHEN
                     TDLRAFKSEEKFELVTCDVSFISLINLLYYIDNLALKEIILLFKPQFEVGKNIKRDKK
                     GVLKDDKAILKARMDFEKACAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            602..1456
                     /locus_tag="SB815_000924"
     CDS             602..1456
                     /locus_tag="SB815_000924"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEG0906667.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKCLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGRDFLSFLKKEFVNLKFIVVGYDF
                     SFGKNRAYNAKDIESLSGIKTIIVDEFSIDGIGVHASLIKDFLSKANLQKAKEFLGRD
                     YSIKGKMIKGQGLGSKELFATINLDCEGYFLPQNGVYVTLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFTQGEFFELEFISFLRENQKFQDLKKLKNQIAKDIEQARE
                     LLRKNDER"
     gene            1443..2153
                     /gene="cmoA"
                     /locus_tag="SB815_000925"
     CDS             1443..2153
                     /gene="cmoA"
                     /locus_tag="SB815_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HEG0906668.1"
                     /translation="MMKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDQIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(2143..2364)
                     /locus_tag="SB815_000926"
     CDS             complement(2143..2364)
                     /locus_tag="SB815_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG0906669.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(2361..2795)
                     /locus_tag="SB815_000927"
     CDS             complement(2361..2795)
                     /locus_tag="SB815_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG0906670.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKAKECKES
                     GTLSEDCINALKVGVKPTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDDVNMTQEK"
     gene            complement(2853..3485)
                     /locus_tag="SB815_000928"
     CDS             complement(2853..3485)
                     /locus_tag="SB815_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEG0906671.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            complement(3496..4146)
                     /locus_tag="SB815_000929"
     CDS             complement(3496..4146)
                     /locus_tag="SB815_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEG0906672.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFEDDTNIPKKYRTTWSNYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
                     LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNHEVNDENIKQYQINCDKF"
     gene            complement(4143..4769)
                     /gene="nth"
                     /locus_tag="SB815_000930"
     CDS             complement(4143..4769)
                     /gene="nth"
                     /locus_tag="SB815_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEG0906673.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            4850..5671
                     /gene="peb4"
                     /locus_tag="SB815_000931"
     CDS             4850..5671
                     /gene="peb4"
                     /locus_tag="SB815_000931"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HEG0906674.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            5671..6735
                     /gene="fbaA"
                     /locus_tag="SB815_000932"
     CDS             5671..6735
                     /gene="fbaA"
                     /locus_tag="SB815_000932"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEG0906675.1"
                     /translation="MGVLDIVKAGVISGDELNKIYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            6830..8272
                     /locus_tag="SB815_000933"
     CDS             6830..8272
                     /locus_tag="SB815_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG0906676.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            8269..9222
                     /locus_tag="SB815_000934"
     CDS             8269..9222
                     /locus_tag="SB815_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEG0906677.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKIGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGYTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            9209..10084
                     /locus_tag="SB815_000935"
     CDS             9209..10084
                     /locus_tag="SB815_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HEG0906678.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDVFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKSV"
     gene            complement(10076..11419)
                     /locus_tag="SB815_000936"
     CDS             complement(10076..11419)
                     /locus_tag="SB815_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG0906679.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(11470..12138)
                     /locus_tag="SB815_000937"
     CDS             complement(11470..12138)
                     /locus_tag="SB815_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEG0906680.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGVLDDQIAD
                     KIHHGGYHKAIFTNSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQFS
                     NAILQVSEPRKPCVKISKIHNNPNFTHEIFKTGLSGWYYKVLQVGQIRKHENIKILEK
                     NSTSLSVFELNQLFYSPHQILKQNPNLLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            complement(12135..>12583)
                     /locus_tag="SB815_000938"
     CDS             complement(12135..>12583)
                     /locus_tag="SB815_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="thioredoxin fold domain-containing protein"
                     /protein_id="HEG0906681.1"
                     /translation="LILILAYSLSIFLGGLFGAKNFLNPLNFNTISASKHALSYDYIN
                     NFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKMQNYKLIKVDVSEN
                     NNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKIEP"
BASE COUNT         4538 a         1598 c         2125 g         4322 t
ORIGIN      
        1 tttttagaaa atttaaaaaa aacgcaagat ttaaatcctg aagatatact tttagccaat
       61 gagttaaaat tggatctttt aagtgaaatt tatgtttcaa gagcagcttt gaaattaaaa
      121 aaatttttag aagaaaatga tattgaaata aaacataaaa attgtcttga tataggatct
      181 agtacgggcg gttttgttca aattttactt gaaaatcagg ctttaaaaat cactgctctt
      241 gatgtgggta gtaatcaact ccatccaagt ttaagagtaa atgaaaaaat tatcttgcat
      301 gaaaatacag atcttagagc ctttaaaagt gaagaaaaat ttgaacttgt tacttgtgat
      361 gtgagtttta tttctcttat taatttactt tattatattg ataatttagc tttaaaggaa
      421 attattttac tttttaaacc tcagtttgaa gtgggaaaaa atatcaaaag agataaaaaa
      481 ggtgttttaa aagatgataa ggcaatctta aaggcaagaa tggattttga aaaagcatgt
      541 gctaaattgg gttggctttt aaaaaatacg caaaaatcaa gcattaaagg aaaggaaggt
      601 aatgttgaat atttttacta ctatatcaaa aattaatatt acctctttag ccataggttg
      661 ttttgatggt atgcatttag gacatctaaa acttgtaaaa tgtttagatg agaatggggc
      721 tttattagtt attaataaat ttaagggtca atttctttgt tcaaatcgtc aaaaagaaga
      781 aatttcagga aaaaaagtta tagaagtgga ttttgaaagt ataaaatctt tagatggtag
      841 agatttttta agctttttga aaaaagaatt tgtcaattta aaatttatag tggtgggata
      901 tgatttttct tttgggaaaa atagagctta taatgctaaa gatattgagt ctttaagtgg
      961 gataaaaact ataatagttg atgaatttag catagacgga ataggtgttc atgcaagttt
     1021 aattaaggat tttttatcaa aagcaaattt gcaaaaagca aaagaatttt taggaagaga
     1081 ttatagtatc aaagggaaga tgattaaagg acaaggtttg ggctctaaag aactttttgc
     1141 gactataaat ttagattgtg aaggttattt tttacctcaa aatggtgttt atgttacttt
     1201 gttaaaaagt caaagaaaaa cttataaaag tgtgagtttt ttaggtgtaa gatcaagcga
     1261 tgaaaatttt gctatagaaa gtcatatttt agaagaattg ggtgaaaatt tcacgcaagg
     1321 agagtttttt gaactcgagt ttatatcttt tctaagagag aatcaaaaat ttcaagatct
     1381 aaaaaaactt aaaaatcaaa ttgctaaaga catagagcaa gctagagaat tattaaggaa
     1441 aaatgatgaa agatgaactt tttaaacaaa gccctaaaaa acaatttgaa tttgataaaa
     1501 gcgtggctag tgtttttgat gatatgatca atcgttctgt accattttat agagaaaatt
     1561 tagaactttg tggcaattta ttggctaaaa ttttacctac aaatgcaagt gtttgcgatt
     1621 tgggctgctc aagtgctaat tttttgattt ttttggcaaa tctaagaaag gattttaaac
     1681 tttttggcgt ggataattct gcttccatgc ttgaagttgc aaaatcaaaa gctaaagctt
     1741 atgggcttga tataagtttt tttgaagcta atttatgcga atttgatttt tttacttgcg
     1801 atgtttttgt agcaaattat accatgcagt ttattcgtcc tcctaaaaga caagaattgc
     1861 ttgatcaaat ttataaaaat ttaaactcta aaggcatttt gattatgagt gaaaaaatcc
     1921 tttatgaaga tgcttttttg tctaaaaata tcatagaact ttatgctgat tataaagaaa
     1981 aacaaggcta ttctaagttt gaaatcgcag ctaaaagaga agctttggaa aatgttttaa
     2041 ttccttatag tcaaaaagaa aatttaaata tgctagaaaa ggcaggtttt aagaaaatag
     2101 aaagtatttt taaatgggca aattttgaaa ctttcatagc ttttaaggat tagaaatatt
     2161 ttcatcttcc cattcatctt ttggaaaacc tatcttatat gcattaacac aatcttgact
     2221 aatgatagct ttgtgtctgc attctaaact tctttttttt gcttcctcgg ggtgattttg
     2281 ataatattct acacttttgg tttgttcgca tgctgcaaaa aatataccaa taaggcttaa
     2341 aaaaagagtt attttcatgg tcatttttcc tgtgtcatat taacatcatc gctaaagata
     2401 gaactttgat tgttttctgt tgttttggaa ggataaattt cagaaggtgt ttctgctata
     2461 ggtggtatta taatactttc attattttct gaactttggt taatatcttt tgtggttttt
     2521 tcttttttta aatcattttg ttttaaagct tctaatattt gattatcaga ttttttcggt
     2581 gtgtttggac tgtatttacc ctcttcattt gttggtttaa caccaacttt taatgcatta
     2641 atacaatctt cgctaagagt tccgctttct ttgcattctt tcgctttttc ttttgcttcg
     2701 ctaggaagat ttttgtagta attttctgtt ttactatcac aagctgttat attaataact
     2761 attaaaattg caagtaaaat acttagtctt cgcatttatc aatctcctaa aatttttaat
     2821 atcttagcaa acttgtataa agcaacgata aattattttt cttcattgta agaaaaaata
     2881 ggtaaagacc attgatattt gatagctaaa agccttgcaa aaactcctat aaaaagagtt
     2941 aaaagtgtgc aaactagggc attaagctca agccaaatta ttagagaata atagattgct
     3001 cctgcaatta tggcaattcc tgcataaatt tctttttgaa acaccaaggg gattctcata
     3061 cataaaatat ctcttaaaat tccaccaaaa acaccggtaa ttacagcggc agcaacggct
     3121 atgataaagc catggttttg atctatagct atttgagctc caagtatgct aaaaacaaca
     3181 agtcctatag catcaagagt tagaaataaa gtttcaagtt tggttactac gcgcggaatt
     3241 tttgtggcta caagggcgca aaaacagatt aaaataatat attcaggatg tttaacccaa
     3301 gttaaaggat aatgtcctaa aagcacatct cgtatgcttc cgcctccaat tgctgttacg
     3361 agagcaataa aaataactcc aaaaagatcc attttgtggc gtcctgcagc taaagctcct
     3421 gtcattcctt ctgcggaaat acctatgata taaagagtgg ttatcgtaag agcatttatc
     3481 tccataattt ataccttaaa atttatcaca atttatttga tactgtttaa tattttcatc
     3541 atttacttcg tggtttggtg cttgatagca ttctttaaat ttcggagttt taataatttt
     3601 cacataaaaa cttggtatag caatacggtt tttaatgtat tgtggttctt tatcgtaaag
     3661 tactaaattt aaaacttcga tactttgaaa ttctaaagct aaatttcttt ctctttgttc
     3721 gatttcattc caaattttat tatttatttg tgcattttgt ggggtaatat tactcattaa
     3781 aaatactgaa ttttgagcag ctttactaaa gctaaaagaa gcattgggtg cagtgtgtcc
     3841 tcgtgtgtaa ccactgtttt tataattact ccaagtagtg cggtattttt taggaatatt
     3901 tgtatcatct tcaaagcgag ggcgtttttt gatttgtcta tctttcaaat ttgaagcttc
     3961 taccttataa gcaacagctt ttgtgccttt gagtttataa tcatagcaat ttagataaaa
     4021 aaacttatct aagatttgcg agcaatttat attgttaaaa taagaagaaa aatcagcact
     4081 aggcttgtaa ggttctaagg caaaaatatt aagagatata gtgagtaaaa agatgaaaat
     4141 tttcatttaa gttccttatc tttacttttg caaagatgat ttaaaaagca ttctttacat
     4201 aaaggttttt tagctttaca ggtgtaacgt ccaaaaagaa ccatggcttg atgaagatag
     4261 ttaagattat ctttaaatgt gcgtgttaaa tcttcttctg tagcttctgg agtttttgct
     4321 ttgctaagtc ctaagcggtg agaaactcta aaaacatgag tatctacagc catgaaattt
     4381 gctccgcacc attctattaa aactacatga gcggtttttt gtcctacgcc tgctaaggat
     4441 tttaaatttt gttcatcaag aggaatttct ccgtcaaaat tttcacaaac tgcttttgcc
     4501 atttttataa gattttgtgc tttattatta aaaaatgaac aagtttgtat ataggtttta
     4561 agacttgata aatttgcatt tgcaagggat ttaatatcag gataagcttt aaaaagatca
     4621 ggagtgatga gattaactct tttatcagtg cattgggctg aaagcattac gcagactaaa
     4681 agctcatata aatttgaaaa tttaagctct gttacaggct tgtcaaaatg ttttaaaaaa
     4741 agttctttga tttctaaatt tcttttcatt ttttaatttt agttaattag ctttaaacca
     4801 agtttagata taattgattt tatatacatt ttattaaaaa ggaaacctaa tgaaaaaatt
     4861 ttctttagtc gcagcaactt tgattgcagg tgtagtttta aatgtaaatg cagctacagt
     4921 agctactgtt aatggcaaga gcattagcga tacagaagta agtgaatttt ttgcccctat
     4981 gcttagagga caggatttta aaactttgcc agataatcaa aaaaaagctc ttattcagca
     5041 atatattatg caagatttaa ttttgcaaga tgctaaaaaa caaaatttag aaaaagaccc
     5101 tttatacaca aaagaacttg atcgtgcaaa agatgcaata cttgttaatg tttatcaaga
     5161 gaaaatttta aatactatta aaattgatgc ggctaaagtt aaagcttttt atgatcaaaa
     5221 taaagacaaa tatgtaaaac ctgcaagagt gcaagcaaaa catatcttag tagcgacaga
     5281 aaaagaagct aaggatatta ttaacgaact taaaggttta aaaggtaaag aactagatgc
     5341 taaatttagc gagcttgcta aagagaaatc aattgatcca ggttcaaaaa accaaggtgg
     5401 tgagcttggt tggtttgatc aatcaactat ggtaaagcct tttacagatg ctgctttcgc
     5461 gcttaaaaat ggtactatta ctacaactcc ggtaaaaacg aattttggtt atcatgtaat
     5521 cttaaaagaa aattcgcaag ctaaaggtca aatcaaattt gatgaagtaa aacaaggtat
     5581 tgaaaacgga cttaaatttg aagaatttaa aaaagttatc aatcaaaaag gccaagatct
     5641 cttaaatagt gctaaagtgg aatataaata atgggtgttt tagacattgt aaaagcaggg
     5701 gtgattagcg gagatgagct taataaaatt tatgactatg ctaaagcaga gggttttgct
     5761 atccctgctg ttaatgttgt aggaactgat tctattaatg cagttttaga agctgcaaaa
     5821 aaagttaact ctccagttat tatccagttt tcaaatggtg gggcaaaatt ttatgcaggg
     5881 aaaaattgtc ctaatggaga agttttgggt gcaattagtg gggctaaaca tgtacattta
     5941 cttgctaaag cttatggtgt acctgtgatt ttacacactg atcatgctgc aagaaaactt
     6001 ttgccttgga ttgatgggct tattgaggca aatgcacaat ataaaaaaac ccatggacaa
     6061 gctttattta gttctcatat gcttgatctt agcgaagaaa gtttagaaga aaatcttagc
     6121 acttgtgaag tttatcttca aaaacttgat gctttaggtg tcgcgcttga aatagaatta
     6181 ggttgtacag gtggcgaaga agatggagtg gataatacag gtattgataa ttccaagctt
     6241 tatacccaac cagaagatgt agctcttgca tatgaaagac ttggaaaaat tagtgataaa
     6301 ttttcaatcg cagcaagctt tggaaatgta catggagttt acaagccagg aaatgttagc
     6361 ttgcaacctg aaattttaaa aaattcgcaa aaatttgtaa aagataaatt tgctttaaat
     6421 agcgataagc ctataaattt tgtatttcat ggcggtagcg gtagtgagct aaaagatatt
     6481 aaaaatgcag taagctatgg cgtaattaag atgaatattg acacagatac tcaatgggct
     6541 ttttgggatg gggtgcgtga atatgaactt aaaaataggg cttatttgca aggacaaatt
     6601 ggaaatccag aaggtgatga caagccaaat aaaaaatact atgatccgcg tgtttggtta
     6661 agaagcggtg aagaaagcat gataaaacgt cttgaaatcg cttttgaaga tttaaactgt
     6721 ataaacaaaa actaagcatt ttaaaagctt agttttattt tgttttaaaa atttttatca
     6781 aattaagtag caatctttaa aataaaattt ttaatgaggt attggtttca tggatattaa
     6841 atcagatgaa atttcagaac ttgttttgcc tgaaggcaaa gatgcaagag gttctttggt
     6901 ttattttaaa attattttta ttccagcttt tctttatatt ttgattttat tgggttattt
     6961 taatgtaatt gactttaagg tcgaattaca tacggttatt atgacaggtg tgattttttt
     7021 tacagcattg atttttgcta gacatagtgc tgagtatgcg tatagtattt ttgaacaaca
     7081 aaaagatgaa tttaaacagg ctttaaaaag acatattatg aggcattttc ttgccatagg
     7141 gaaagacacg aaatcaaatg ccaattttga tgactttgct tatacatata ttaagggtgc
     7201 aagaaatgag aattttgcta gtataggttc ggcaattttt ccaatgatgg gaattttagg
     7261 aacttttatc agtatagctt tttcaatgcc aaattttagt tctagtgata cagccgcttt
     7321 agaacaagaa attgcagatt tgttaagtgg agtgggaact gctttttatg tttcaattta
     7381 tggaattttt cttgcattat ggtggatgtt ttttgaaaaa tatggtaaaa gcaaaataga
     7441 tcgtttgcta aatcgtcaaa aaaacgctac aagtggattt ttttggacaa aagaagagct
     7501 tgatcaaaga tatttaactg aaagtttgca acattttgaa aaaattggag caatttttaa
     7561 acaagttagt aatgatgatt tttttgcaga gcttgatcat gctattgata gaaagtttgg
     7621 tattttccaa gatatgctaa atgtagaaga aaaggctatt agattaagta gtgaacatat
     7681 caaacaaacc atgggtgagc ttagtaaagc acaaagagat caacgcgatc ttggaaagct
     7741 ttatagtgaa atgttaaatg gtataggttt gctcaatcaa aatttaaaag aaatcaatac
     7801 aagaatgtca gaacaatata atcgcttgct tgatatcagt agtgataaaa ttcatcatct
     7861 tgataagaca ctaagtgcat tcgatgaaaa aatagagcgt tttggtaaaa attttgaact
     7921 ttatgaaaaa gcaatgttgg aaagtcaaga aaaggttttt gagggattta aagcaagctt
     7981 gtttgaaggt atgcataaat ttaaagaagt atatgaagaa gaaaaaagta ttgatgctaa
     8041 aatcaaaatg atggatgagc ttaaaaaaga aatgaaagca cttgatgaag aaacaagtca
     8101 aatgatgagc aagctttctg gggatgaaaa tcagaataaa gaaaatgaaa ccaaacaaat
     8161 agaagatttt tcagagtcta agactgaaga aaatcaagat gaaattcaag cagaaatatc
     8221 taagcaagaa agcaatgatg agctaaaaaa tgaagataaa gaaaataaat gaaaaatgag
     8281 tcaaaagaag atagcaattt ttggatagct tatgctgatt taatggcagg attgctgttt
     8341 gtttttattt tgctaatagg tgctattgtt gtaaaatatg ttttaactca aagtgattta
     8401 aaagaaatca aagataatct caataaacaa gaggcacgct tagaggagag taaagaagag
     8461 cttagaaata aagaagccat agtgtttaaa ctaagttctg atttaaacaa tgcttctagt
     8521 gctttaaatc ttgctaattc tcaaaaagca gaattagagg ctaatattac aaattacaag
     8581 cagttaagta aagatttaaa ctcaacttta gataataaag ataagcaaat tttgatttta
     8641 ctaggtcaac tagagaaaaa agatgaagag cttaaaaatt tacaagaaga ttttcaaaaa
     8701 gctaaagaaa aggtgcaaaa tcttggtttg attcgtgaaa atttaagcaa ggaattacaa
     8761 agtaagcttg ataataatat cactatagat gaaaagatag gatctatttc tttgcctgct
     8821 gaagtacttt ttgataaaga ttcttatgtg ttaaaaaatg aggcaaaggc aagtttgaga
     8881 aaaatcttaa gcgaatattt tgatgctatt cttgaagatc caaaaatttt ttctaacatt
     8941 gaaaatatca ttattgaagg atatactgat agtgatggat cttatattta taatttagat
     9001 ttgtcgcaaa aaagagctta tgaggtgatg aattttatct atacttttta taagagtgat
     9061 aagcttcaaa agcttttaat ggcaagtgga cgttcttttt cagatcctgt gtttgtcaac
     9121 ggagttgaag ataaggataa gagtcgtcgc atagaaataa aatttagcat taaaaatgat
     9181 aatgctttaa aggatgtaga aaaattcttt gaatttcatt aaaacaatta gtcctataca
     9241 aaaaatcaat tttaacggat ttgaatttta tattaaaaga gatgatttat taggggaaat
     9301 taatggaaat aaagctagga aacttgcttt ttatatccat caaagatatc ctaaaaatca
     9361 atcttttgta agttatggag gaagccaaag taatgctttg gcggcattaa gtatttttgc
     9421 taaacaaaga tcatataagc ttgtttttgc ttgtgaaaaa atttctactt ttcttaagaa
     9481 taatccttgt ggaaactatg ctttagcttt agaaaatggt gttgattttg tagaaaatat
     9541 ccattcttta tccttaaagc aatttgcttt gtctttgtgt aaaaaagatg atgtttttat
     9601 agaacaaggt atagctaatt tagaagctca atatggctat atggaacttg ctcaagaaat
     9661 tcaaatgcaa agtcaaagtt taaagcttga ttttgatatt tttttacctt cgggtacagg
     9721 cacttcggca gcttttttgg caaagtattc taaatttaaa gtatttactt gcgcttgtgt
     9781 aggtgatatt aaatatctta aaaaacaaat tttaacatta gatccaagct atgatttttc
     9841 aaatttagaa tttttaacaa gtgataaaaa atatcacttt gctaagccgt ataaagaatt
     9901 ttatgagctt tatatggatt taaagttaaa gtgcaatata gaatttgact tgttgtatga
     9961 tattttagga ttaagtatag cattaaaaca agagtggaaa aaaccattgc tttatataca
    10021 tcaaggtgga attttaggaa attccactat gttagagaga tataaattta aaaaatcagt
    10081 ttaaaattcc atagataaaa atgattaaaa taatcaaagg tactatatat tttacataat
    10141 aaaaccaaat tccaaaccat gaacttttaa gtgtattgtt attgctaagt tcttttagac
    10201 tttcttgttt gcctaaaatc caacctacat aaatacagca aaaaaatgca gttaaaacaa
    10261 acaaaatatt tccactaatg aaatcaaaac tatcaaaaat gttttttcct ttgatgataa
    10321 caatatcacg ccaaggccca taagttagaa tacaaggaag attgccaagt atgaagataa
    10381 accctagagt taggttaata gaaagatttt tagaatattt aaatttttct tctaatacgc
    10441 taataataac ttgataaatt ggcaagcttg tggttaaagc tgcaatcaag agtaagacaa
    10501 aaaataaaat acacacaata gtgccaaaat ggatatgaga aaatgctata ggtaaagttt
    10561 caaaaaccaa agaaggcccg ctatctggag caagtcccgc tgagaaaagt gctggaaaaa
    10621 tcataaaacc agccaaaaca gctatgatag tatttaaaac ccctgtataa atagcggttt
    10681 ttgccatatt ttcattttta ttaagatgag atgaaagtgt tatcattacc ccaaaaccta
    10741 gggataaagc aaaaaagact tgtcctaaaa catcgattaa aagttttggt gataaaattt
    10801 tactaaaatc aggttcaaga taaaatttaa ctccagccat agctccatca agggttaaat
    10861 tgcgtcctac aacaataata agacagataa ataataaagg cattaaaaat tttacggatt
    10921 tttctatacc atctataatg cctcttttta aaataatata attaataatt acaaaaacag
    10981 tggtaaaaat accaactcct aaaggattga aggctatttt gtcgttaaaa aactgatgag
    11041 taaattcttt gcttactaca ttggcaagac taaaattccc tagggttaat tcccaaatat
    11101 aaactaaaac ccatcctcca agtaccatgt agtaagccat tatgccaaag cttcctaaaa
    11161 gtcccatata tccaatactt tgccattttt gtttgaaagc atctacgcta tttgtcatcg
    11221 cttttctgcc tatgacattt tcaactaaaa taacaggaat gcctatgata atcatggcta
    11281 tacaaaaaac taatacataa gcaccgccac cattttctcc tacaagatag ggaaaacgcc
    11341 aagttgctcc aaatcctatg gttgctccag caactgttag aatataagtt agtgtgctac
    11401 tccatgtttg tctttgcatg attatccttt cgaaaaagaa ttattttacc taaaaataac
    11461 tttaaaaact tataagctat ccatatagct tatatcgtaa gtatttttta agcgtttgtg
    11521 tatcgtttcg tgccaatttt gagatatgag agagtttaat ttttctaatt tatctaataa
    11581 attcggattt tgcttaagaa tttgatgcgg ggagtaaaaa agttgattga gttcaaatac
    11641 actaagtgaa gtagaatttt tttctaaaat tttaatgttt tcatgctttc gtatttgtcc
    11701 aacttgtaaa actttataat accatccact caagcccgtt ttaaaaattt catgtgtaaa
    11761 atttggatta ttgtgaattt tagaaatttt tacacaaggt tttctaggtt cgcttacttg
    11821 cagtattgca tttgaaaatt gatgtatatc acctatgcaa acattttgtt cacaaagccc
    11881 atcgatgctc aaattttcac ccattgagcc aaaatttagc tttttattaa gaaatctttc
    11941 ccatatagga tagttttgac aagagttggt aaaaatagcc ttatggtagc ctccatgatg
    12001 aattttatca gctatttgat catctaaaac acctagaaaa tcaatttgtg tttcttctag
    12061 gtaagtatct ttaataaatg cgctttggaa atttttatag tttttaattt tccctatttg
    12121 caaactttga attttcatgg ttctattttt tttaataaat catcagcact gataaaaccc
    12181 gtgattttta atttttcttt tccattttca aagaaaatta aaacaggtgg gccaaaaaca
    12241 ttaaattctt tcatggtttt aatttgttca ttattatttt cgcttacatc aactttgata
    12301 agtttgtaat tttgcatttt ttgtatgatt ctttcatcgc taaaggttaa ttcatctaaa
    12361 agtttgcaat tttcacacca agatgcagta aaatcaagca ttataggctt tgtatttgtt
    12421 tgtatttctt gctttaattg ttcaaaattg ttgatataat catagcttaa agcatgtttt
    12481 gaggcagata tagtattgaa atttaaagga tttaagaaat ttttagcccc aaaaagtcct
    12541 cctaggaaaa tacttagaga ataagctaaa ataagaatta aaa
//
LOCUS       DARBAR010000046        12470 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.046, whole genome shotgun sequence.
ACCESSION   DARBAR010000046 DARBAR010000000
VERSION     DARBAR010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12470
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.046"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(189..1397)
                     /locus_tag="SB815_000939"
     CDS             complement(189..1397)
                     /locus_tag="SB815_000939"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEG0906682.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDIMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYKLLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
     gene            complement(1397..2458)
                     /locus_tag="SB815_000940"
     CDS             complement(1397..2458)
                     /locus_tag="SB815_000940"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEG0906683.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPGIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAVI
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            2538..4016
                     /locus_tag="SB815_000941"
     CDS             2538..4016
                     /locus_tag="SB815_000941"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEG0906684.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLKKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNATIKAVEAVDTCLGEILECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            4088..4831
                     /gene="fabG"
                     /locus_tag="SB815_000942"
     CDS             4088..4831
                     /gene="fabG"
                     /locus_tag="SB815_000942"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEG0906685.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELGYLVNNAGVTNDKLALRM
                     KLEDFSSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            4838..5248
                     /locus_tag="SB815_000943"
     CDS             4838..5248
                     /locus_tag="SB815_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEG0906686.1"
                     /translation="MMDLKEIAQFLDDNVPAFLATLGTCGNPRVRPIQSPLLVRDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFEKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            5585..7420
                     /locus_tag="SB815_000944"
     CDS             5585..7420
                     /locus_tag="SB815_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG0906687.1"
                     /translation="MGEFSRRDFIKTACISVGALAASSSGVYALDDSSKMDKDTNLPS
                     CDVLVIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVMDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGAKTHELAQKWQARFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKNLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
     gene            7417..8382
                     /locus_tag="SB815_000945"
     CDS             7417..8382
                     /locus_tag="SB815_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HEG0906688.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEGHKDLVKMIKAAQEAAVKE"
     gene            8386..9243
                     /locus_tag="SB815_000946"
     CDS             8386..9243
                     /locus_tag="SB815_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HEG0906689.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     TFLAQGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDAF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTSSKARLPMIHLSQLVGLALGLSKEMVGLDY
                     NIIDASKIA"
     gene            complement(9267..9935)
                     /gene="tenA"
                     /locus_tag="SB815_000947"
     CDS             complement(9267..9935)
                     /gene="tenA"
                     /locus_tag="SB815_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HEG0906690.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELNIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVSAQKFQKLSEIFHTATRLEVAFWEHSLRM
                     ELNL"
     gene            10045..10278
                     /gene="acpP"
                     /locus_tag="SB815_000948"
     CDS             10045..10278
                     /gene="acpP"
                     /locus_tag="SB815_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG0906691.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            10304..11518
                     /locus_tag="SB815_000949"
     CDS             10304..11518
                     /locus_tag="SB815_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEG0906692.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     AAGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVISVMALRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            11520..12458
                     /gene="accA"
                     /locus_tag="SB815_000950"
     CDS             11520..12458
                     /gene="accA"
                     /locus_tag="SB815_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HEG0906693.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVAGLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
BASE COUNT         4286 a         1678 c         2446 g         4060 t
ORIGIN      
        1 tgtcttcatt acttacttta tatataaatc ctatgtttat ttttattgtt gttttagatg
       61 atacttagaa tcgtgtttaa aaaagagttt gctgctggtt agggttttta gagagaatag
      121 ggtgttttta ggggtttgaa aatactagaa ggataaaatt taaaattttc tatgaaaagt
      181 aaaataaatt aaattttatt cacacattct ttaaagactt ttccacgctc tgcgtaagag
      241 ttgaactgat ctaaacttgc acaagcggga cttaaaagag ctacttcatt gactcttaag
      301 tgatttgaaa tttcatttac agctttagat aaaacttcgc atttataggc tttcaaattc
      361 gctttttttg cataatcaag cattttttcg gtactaatac ctatagcata gagttctata
      421 tcaaatcctt tcataaaatc aaataaattg ctaagatcta cacccttatc atctccccct
      481 atgataagat ggattttttt atctttatag cgactaagtg cagccattac agcactttca
      541 tttgtagctt tagtgtcatt tacccaaagc ctattttgac tgtctttaag ctcttcgagt
      601 ttattttttt ccattacaaa gctatttaaa agcttatagc ttaaagtatc aagtaaaatt
      661 ttttctatag ctaaagccat gatagcatcg agtaaaaaag gacttttaaa ggaaattttt
      721 tccgtatcaa tgccaaattt aacagctaga tctttttcat cttcatagct tattttatga
      781 gcttttgttg gagtatttgc ataaatttta ggcagtatta ctacatcaca ttcattcatt
      841 ctttttaaaa cgcttagctt atcttgaaca taattatcaa aacttccatg ccaagaaaga
      901 tgatcaggac ttataggtaa aagtgcataa atttcaggtt tagctttatg agtgtagtgt
      961 agggtaaaag atgaagtttc aagtatccaa agttttgcat aaggattaag ctctgctaaa
     1021 ggagttccaa catttccacc cataacagca ccaatgtgtg ataataaatg tgtagccatt
     1081 tgtgtggtgg tggttttgcc attggttccg cttatccaaa cggattttgg catgatatca
     1141 taaaaaaagt catattcgct ttgtaaattt tttgcttttt gaatgagttt gtgctttggt
     1201 ggaaaacctg gactaggaat ttcaatatcg cttaaattat catcaaaatc attaggattt
     1261 aaaagtaaat ttcctagtgt atcttttttt gtttctgtaa aatgatcatc ataaatatca
     1321 aaaggtccaa atttatctac taaattttca gcaatagcac gtgtggtttt tccgtatcca
     1381 aaaagtgaaa ttttcattat cttagcttta ttgatgcaag tgcaagcaaa tttgaaagta
     1441 aggctatcat ccaaaaacgc actataattt tattttccac ccagccaact ttttcaaaat
     1501 gatgatgaat aggcgccatt ttaaatactc ttttattaaa aattttaaaa cttccaactt
     1561 gtaaaattac agaaacagtt tcaagaacaa aaacaaaacc tatgagtaaa agtaaaattt
     1621 catttttgct aataacggct aaaaatccta taaagccacc taaagctaaa cttccactat
     1681 ctcccataaa aacttgtgca ggataacagt tgtaccataa aaatcccatt aaagcaccaa
     1741 ttagcgctgc acaaataatc actacttcac caagtccttg aatttttggc aaaagtagat
     1801 attcactata atttaaattt ccactcaaat ataagaatat ccctaaagta gataaagaaa
     1861 aaatgcctgg aactgtagct aagccatcaa gtccatcggt taaatttaca gcattagagc
     1921 tagaaattaa aaccaaaatc caaaaagcaa tggcaaaaat ttccatatca aaaagagggt
     1981 gtttataaaa aggtataaaa agttccgtgc taagctctga actaaaatat aaaggtaaga
     2041 tgcagataag tccagcgatg atttgtgcta aaagcttcat tcttggacta agtcctgaat
     2101 gattatcttt ttttagaact ttgcctaaat catctatgag tcctatcaaa caaaaaagta
     2161 tcaaacaaag taaagcactt atagcaaaaa tattatcaaa tttgatacaa aataaacttg
     2221 cgattactgc agaactgatg aaaataagcc cacccatggt tggagtatgg catttggttt
     2281 tatgagtttc tggggcgtat tcgtaaatag gttgactagc atttttagct tttgcccaag
     2341 taataaattt aggcattaaa aataaagaca aacataaagc gataaaaaat gcaaatcctg
     2401 cacgcacact aatataagta aaaaaagcat aatgacttaa atctgaaaga taatacaaaa
     2461 cctagccttc tttttggttt ttaaaagttt aattttagta aaatctaacc aaaaaaattc
     2521 ttataaaaga gagaaaaatg aagcaaaaat gcgttttaat tattacagat ggaatagggt
     2581 ataataagaa tagtaagttt aatgcttttg aagcagctaa aaaaccaagt tatgaaaagc
     2641 tttttaagga agtcccaaat tctttactaa aaacgagtgg tttagctgta ggtttgccag
     2701 aagggcagat gggaaatagt gaagtagggc atatgtgtat aggaagtggg cgtattattt
     2761 atcaaaattt agtgcgtatt aataaagcca ttgaaaacaa agaacttgaa aaaaatgaga
     2821 atttaaaaaa acttttagca aaatgtaaaa gagtgcatat tatagggctt tatagtgatg
     2881 gcggggtaca ttctatggat acgcatttta aagccatgct tgaaatttgt gcgaaaaatg
     2941 gcaatgaagt ttttgctcac gcaatcactg atgggcgtga tgtaagtcca aaaagtggct
     3001 taaatttcat aaaagattta aaagaatttt gtgaaaactt aggcgtgcat tttgctacgc
     3061 tttgtgggcg tttttatgct atggatagag ataagcgttg ggatagggta aaagagtatt
     3121 atgagtgctt gttaggtaag gcttataaag tgccaaattt attagaatac ctacaaaaat
     3181 cttacgatga aaatgttact gatgagttta tcaaagcagc tcaaaatgag aattacaagg
     3241 gcatgagaga agaagatggc attatcttta tcaactttag aaatgataga atgaaacaac
     3301 ttgttgaagt gttaaattct aaggatttta aagagtttga acgcgaaaaa atctttgaaa
     3361 atttacttac tatgagtgtt tatgatgata aatttaaact ccctgtgctt tttgaaaaag
     3421 aaaaaattga aaatacttta gcgcaagtga tttctaaagc agggcttagt cagcttcata
     3481 ccgcagaaac cgaaaaatac gcccatgtaa ctttcttttt taatggcgga aaagaagagc
     3541 ttttagaaaa tgaaacaagg gttttaatcc caagccccaa ggtaaaaact tatgatgaaa
     3601 aaccccaaat gagtgctttt gaagtgtgtg atgcagtgaa aaaaggcata gaaaagggtg
     3661 aggattttat agtggtaaat tttgcaaatg gagatatggt tggacataca ggtgatttta
     3721 atgctactat aaaggctgtt gaagcggtgg atacttgttt aggcgagatt ttagaatgtg
     3781 caaaaaagca tgattatgct tttatcatta caagtgatca tggaaattgc gaggctatgc
     3841 aagatgaaaa aggaaatttg cttaccaatc acaccacttt tgatgttttt gtttttgtgc
     3901 aagcaaaggg agtttcaaag attaaagata atatggggct tagcaatatc gctgcaagtg
     3961 tgcttaaaat tttagactta gaaattccaa aagaaatgaa tgaggctttg ttttagtttg
     4021 tttgcctttt ttataagaaa tttgttaaga ttgcaatttt taaaattaaa cttattaagg
     4081 atagataatg aaatttagcg gaaaaaatgt tttaattacc ggagcaagta agggaatagg
     4141 tgcttctatt gcaaaaactt tggcgggttt tggacttaaa gtttggatca attatcgttc
     4201 aaaacctgaa cttgcagatg ctttaaaaga tgaaattatt gcaagtggtg gcgttgctgc
     4261 tgtgattaaa tttgatgcaa gcaaagaaga tgagtttgaa aatggtgtaa aaaccatagt
     4321 ggagagcgat ggagagttag gttatcttgt aaataacgca ggcgttacaa atgataaact
     4381 tgctttaaga atgaaattag aggactttag cagtgttgtg gatacaaatt taagttcagc
     4441 ttttttaggt tgtagagaag ctttaaaaac catgagtaaa aaacgctttg gtgctgttgt
     4501 aaatatcgct tctattgtcg gagaaatggg caatgctgga caagtaaatt attctgccag
     4561 taaaggtgga atgatagcta tgactaaatc ttttgctaaa gaaggagcaa gtagaaattt
     4621 acgctttaac tgtgtaactc caggtttcat aaaaagcgat atgactgaag ttttaagtga
     4681 tgaaatcaaa caaacctatc aagacaatat ccctttaaaa cgctttgcag aacctgaaga
     4741 agtggctaat tgtgtagcgt ttttacttag tgattatgcc tcttatgtga caggcgatgt
     4801 gcttaagatc aatggtggtt tatatatgta aggaaaaatg atggatttaa aagaaatagc
     4861 acaattttta gatgataatg taccagcatt tttagccact ttaggaactt gtggaaatcc
     4921 tagagtgcgt cctatacaaa gtccattgct tgtgagagat aaaatttatt tttgcacagc
     4981 aaatacaaaa ggacttttta agcatataaa aaattataat ggtattgaat tttgttcttg
     5041 tgcaaaagat gggacttttt taagacttag ggctaatgcg gtttttgaac caaatttaga
     5101 agttaaaaaa atgatgtttg aaaaatatcc ttatcttgta aatctttatg aaactccgca
     5161 aaatccaaaa tttgaagttt tttatcttga tcatttaagc gctagaatgc aatttatgaa
     5221 tggagaattt aagcttttta aggcttaatg atttgataat tttattaact atatattaat
     5281 taagataaat attatcttaa ttaatattaa ctttttgtta tttttttaag gtataatcat
     5341 tccgtttaat ttgcaaggaa tagattatga tatattgcaa aaatttttta atatttattt
     5401 tattatattc atctatcttc tttgattgct tatcttatgc ttttttatat ttattaaatt
     5461 ataaatttgt ttttaatcca ttttatattg aaaggagagt ttgtttttgg atttttggca
     5521 tgcggttatg taagattgac ttacattaaa aattattatt aattttttaa ataaggagaa
     5581 tgatatgggt gaattttcta gaagagattt tataaaaaca gcctgtatta gtgtaggagc
     5641 tttagctgca agttcaagtg gagtttatgc cttagatgat tcatctaaga tggacaaaga
     5701 tacaaattta ccttcttgtg atgttttggt aattggatca ggtggagcag gtttgcgtgc
     5761 tgcagccgca gtgagaaaag aaaatccaaa attaagcgtt gtagtagcta caaagatgat
     5821 gccatcgcgt aacgcaactt gtatggcaga gggtggaatt aatggagtta ctgatttttc
     5881 taatggagat tcctataaat tacatgctta tgatactatc aaaggcggag cttatttggt
     5941 agatcaagat gcggctttaa aattttgtga attagctgga aaggctattt ttaatatgga
     6001 ttttatagga accttgtttt caagaaatga gcaaggtgga gtagctcagc gtttaatggg
     6061 aggagcttct aagaaacgct gtaattattc tgcagataaa acaggtcata ttttaatgca
     6121 ttcttgttta gatgatgcta ttagtagtgg tgtgaaattt ttaatggatc atgaactttt
     6181 ggatataggt gttatggatg gaaaatgcga gggtgtcgtt ttaagagata tacaaagcgg
     6241 tggaatttat cctgtattat gcaaagcttt ggtgattgct acagggggat acacaaggat
     6301 attttataat agaacttcaa ctccttttat tgccacagga gatggtgtgg cagctgctct
     6361 tagagcagga cttggttttg aagatcctga gatgatacaa tttcacccaa caggagttgc
     6421 aaatggtgga actcttatta cagaagcggc gcgcggtgaa gggggatatc ttttaaataa
     6481 tcgtggtgag cgttttatga aaaattacca tgaaaaaatg gagcttgccc cgcgagatgt
     6541 agttgcgcgt gctatagaaa cagaaattcg cgaaggtaga ggttatggcg agggacttgg
     6601 agcttatgtt ttgtgcgatg tacgccactt aggaaaagaa aaaattttaa aagatttacc
     6661 aaaaattcgt cacactgcaa tgctttttga aaatattgat ttagtggata ctcctgtacc
     6721 tatccgtcca acggcacatt attctatggg tggaattgaa gtggctaaat ttgaagatat
     6781 gagtactaaa attgctggaa tttatgtagg tggagaagct tcttgtattt ctatacatgg
     6841 agccaataga ctagggggaa attctttagc cgatgcagtt gtaactgggc atttagcagg
     6901 cattggtgcg acaaattatg ccaaagatgc aagttttgga aaaggggcaa aaactcatga
     6961 acttgctcaa aaatggcagg ctagatttaa agaaattaca aataatggcg gaaatggtca
     7021 agaaatgtat gaattgcgag aagagctagg aagtcaaaat tgggataata tggggatttt
     7081 tagaactcaa gaaaaactcg atcttctagc aaaaaattta gaagatatac aagcaagata
     7141 tgaaaaaatt cgtattccaa atcctaatga agtgatgaat actgctttta cagattatgt
     7201 agagcttggt aatttgattt tactttctcg ctgtgcttgt ttagcagcta gaaatagact
     7261 tgaaagtcgt ggggctcata ctagagaaga ttatccaaag cgagatgata aaaatttctt
     7321 aaaacatagc attgtaaatt tagaaaatga tgaattaaaa cttagttata aagatgtcgt
     7381 ggtaactgag ttttcacttg atggaaggag agtacaatga aaatcatcat agatcgtttt
     7441 aatggcaagg aaaaatatga acaaagttat gatattgatg ataaggatat acaaggaaaa
     7501 actctgctct ctcttttgct ttttattaaa aaaacaaaag atattacttt aaattttacc
     7561 gcctcttgtc aatctgcgat ttgtggggct tgtgcagttc gtgtgaatgg gcattcttat
     7621 cttgcttgtg atactaaaat gcaagatttg ttaaaagaat atgataatcc ttcaagtata
     7681 cgcatttctc cgcttggaaa ttttagagta atttctgatt taattgtgga ttgggagcct
     7741 tctatagaaa atttaagaaa aattcgtcct gccatggtgg caaaaaatga attttcagcg
     7801 gaaaagggct gtaaacaaag tcaagaagaa tttgatcgta ttagcaagca atgggattgt
     7861 attttatgtg gtagctgtgc ttcagagtgt aataaattag aagcagatag tagcgattat
     7921 atgcaacctt ttgtttttac tcatgcttgg cgtgcagcgg cagactctcg aggtaaggat
     7981 cctatgttgc atgtaaaacc cagcgtaatg aatggacttt ggctttgtgt tcattgtcaa
     8041 gagtgcgctg atcgttgtcc aaagggtata agttcagtaa gtgatatagc aaatttaaga
     8101 gtgatggcga ttaaaaaagg tttaaatgaa ggcttagggc ctgatcatgc tgaagctttt
     8161 tataaagatt tagttgaagg ttcaggacgc ttgaatgaaa tttatcttgc tttgcgttct
     8221 gagggtgtta taggttctat gggtaaaaca gatatagctt ttaaacttat gcgtgcagga
     8281 aaaatgaatc ctatgcatgt ttttggcgag gatgaaatag aaggacataa agatttggtt
     8341 aaaatgataa aggcggcaca agaagctgct gttaaggagt aaaatatgca aaaagaatac
     8401 gctttttttc caggttgtgt tttatctcaa gctgcaaaag aatctaaaat ttcacttgaa
     8461 gctattgcac ctattttggg ttggaagttg aatgaaatta aggggtggag ttgttgtggg
     8521 gcttctcaag cgcagtgtgt tgatcctatt gcgactttgg tagctaatgc aagaaatatt
     8581 gctttagcag aagagatgaa aatgccaatg cttacaactt gtagtacttg tatgctaact
     8641 ttaactaaag caaaaaatac tcttgataag ggtgcaaaag aacgcatcaa tactttttta
     8701 gcacaaggtg gaatgaaata tcaaggttca acgcctatta caagtctttt gtgggagctt
     8761 tatgaggatt tggataattt aaaaagcaag gtgaaaaagc cgctttcaaa tttaaaagta
     8821 gctttatttt atggttgcca tagtttaaga cctgaagatg ctttcggtaa aaaagaaagt
     8881 tcaaccaatc caaaaagttt tgaaagtgta gtagaagttt taggggctaa aatagttcct
     8941 tttgaaaaac gccttgattg ttgtggtttt catgcttctt atcctgcaga aaaatctgtg
     9001 aaaaaaatgt ctagtcaaat tgtcaataat gcaagtgaaa atcaagctga ttgtgttgta
     9061 acaccttgtc cactttgtca aatgcagctt gatatctatc aagaaagatt tcaagattat
     9121 actagttcta aagcaagatt gccgatgatt catttatcac aattagtagg acttgcatta
     9181 ggactttcta aagaaatggt tggtttagat tataatatta ttgatgcaag taaaattgca
     9241 taaaaacatg ggcaaaaagc ccatgtttaa agatttaatt ccattcttaa agaatgctcc
     9301 caaaaagcca cttccaagcg tgttgcagta tgaaaaattt cgctgagttt ttggaatttt
     9361 tgtgcactaa cacttgaagt ataagaatta acaaaatctt caaattcttt agcttcattt
     9421 tgaaaatttt cacttccata ggtcaaaatc cattccttgt aaggatgatc ttttaaattt
     9481 tcatttttta aacgatttat aatttcagca cctatttttg catagcctat agcgcaagca
     9541 ctaagagcaa ctaacatatc taaaaaatct ccattttcac ctacgcttaa catataacgc
     9601 gaataggcta tattgactaa actttcatct tttatattga gttcatctgc attaatgcca
     9661 agagataaaa ttgcacgatg aagctccatt tctccttcaa ctatataatt ttgaaatttc
     9721 atagcaaaac gaagttcttt tgcggtattt gagttaagtg ctaatcttgc ataacatttt
     9781 gcgtaattaa gcaaataaat ataatcttgc ttgagataaa aaagaaaatt ttcttgcttt
     9841 aggcttttat cttccaattt tttaacaaaa tcatgatgta gataagcatt ccaaattttt
     9901 tgattttctt tgattaaatt agagaaaagc atcatttttc ctttatgttt taatatttta
     9961 ttttcaagta taatgaaaaa ctataaatat tttaagcttt ttatagtaaa atacgcttta
    10021 ttttaatttt ttgaaggaga gcaaatggca acatttgatg atgtaaaagc agtagtagta
    10081 gagcaattaa gtattgatgc agatgcagtt aaaatggaat caaaaattat tgaagattta
    10141 ggtgctgatt ctttagatgt tgtagagctt attatggctt tagaagaaaa atttgaagta
    10201 gaaattccag atagtgatgc tgaaaaatta attaaaattg aagatgttgt aaattatatt
    10261 gacaatctaa aaaaataatt tttttcttgc aaggagctta ttcttgaaaa gagttgtagt
    10321 tacaggtatt ggcatgatca atgcccttgg tttagataaa gaaagttcat ttaaagcaat
    10381 ttgcaatgga gaaagcggag taaataaaat tactcttttt gatgccacag actttcctgt
    10441 tcaaattgca gctgaagtta aaaattttga tccattagag gttgttgatg gcaaagaagt
    10501 aaaaaaaatt gaccgtttca tacaacttgg aattaaagca gcaagagaag caatgcagga
    10561 tgctggattt agcgaagaat tagacaaaga agaatttggc attgtttcgg ctgctggtat
    10621 cggaggtttg cctaacatag aaaaaaattc cattatttgt tccgagcgag gtccgcgtaa
    10681 aatttcccct tttttcatac cttcagcact tgtaaatatg ttaggaggtt tgatttctat
    10741 agagcatgga cttaaagggc caaatatttc ttgtgttaca gcttgtgcag caggaactca
    10801 tgctatagga gaagcttata aaagtatagc tttgggaaat gctaaaaaga tgttagtcat
    10861 aggtgcagaa gctgcgattt gtcctgtggg tataggtggt tttgcttcaa tgaaagcttt
    10921 atcaactaga aatgaagatc cacagcatgc ttcaagacca tttgacaaag aaagagatgg
    10981 ttttgtcatg ggagaaggtg ctggagcttt agtttttgag gaatatgaag aggctaaaaa
    11041 acgcggtgct acaatttatg ctgaattaat tggatttgga gaaagtgcag atgcacatca
    11101 tattacttca ccaactttag atgggccttt aagagctatg aaaaaagctt taaatatggc
    11161 agggaatcca aaggtagatt atatcaatgc acatggaact tcaacccctg taaatgacaa
    11221 aaatgaaaca gcagcaatta aagagctttt tggcaataat atcccgctta taagttccac
    11281 caaaggacaa acaggtcatt gcttgggtgc cgcaggtgca attgaagcag ttattagtgt
    11341 tatggcctta agagatgggg tagttccacc tacaatcaat cagcttgtaa aagatgatga
    11401 atgtgatctt gattatattc caaatatatc aagaaaagta gatttaaaag tggtgatgag
    11461 taattctttt ggttttggtg gcacaaatgg ctgtgttgta tttaaaaaag tagattaata
    11521 tggcttctta tttagatttt gaaaaaaata ttcagcaaat tgacgaggac attatcaatg
    11581 ctcagattaa aggagatact gaagctgtat caattttaaa gaaaaatctt gaaaaagaaa
    11641 tttctaaaac ttataagaat ttaagtgatt ttcagcgttt gcaattagcg cgtcatccag
    11701 atcgccctta tgctcttgac tatattgaac ttattttaaa tgacgctcac gaaatacatg
    11761 gtgatcgtgc ctttagagat gatcctgcta ttgtttgttt tatgggttat ttaggagaga
    11821 aaaaaataat tgtaattggt gagcaaaaag gacgtggaac aaaagataaa atcgctagaa
    11881 attttgggat gccacatcct gaaggatatc gcaaagcctt aagagtagca ggacttgcag
    11941 agaaatttca aattcctatt ttatttttga tagatactcc aggtgcttat cctggaatag
    12001 gtgctgaaga aagaggacaa agtgaagcta tcgctagaaa tttatatgaa ttaagtgatt
    12061 tgaaaatacc gaccattgct atagttatcg gagaaggcgg tagtggcggg gcgttagcta
    12121 taggggttgc agataaactt gcaatgatga aaaattctgt tttttcagta atttctcctg
    12181 aaggttgcgc tgcaatactt tggaatgatc ctgcaaaaag tgaagctgca accaaagcta
    12241 tgaaagtaac agctgatgat ttaaaatctc aaggtttaat tgatgatgtg atagacgaac
    12301 ctacaaatgg tgcacatcgc aataaagaag ctgcagcagt agctattgct gattatgtaa
    12361 aaaaatccct aaatgaactt gaaaatattg atgtacgaga actttctgca aatcgtatgc
    12421 agaaaatttt aaagcttgga gcctatcaag aggcttaggc ttttacttcg
//
LOCUS       DARBAR010000047        11920 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.047, whole genome shotgun sequence.
ACCESSION   DARBAR010000047 DARBAR010000000
VERSION     DARBAR010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11920
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.047"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..1828
                     /locus_tag="SB815_000951"
     CDS             <1..1828
                     /locus_tag="SB815_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEG0906694.1"
                     /translation="ILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETEE
                     SDKINENKNLDKADNIFEFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTET
                     KIDNEKTNDQEIKLQKAVLAKEIAINQALLREIEQGEIEKPKDFTLPPLDFLANPKEH
                     KQEINESEIDKKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQ
                     DDLTMALMAKSIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIAL
                     GKDIVGNAFVTDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKM
                     LEFSIYNDIPHLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKE
                     LGGEELPFIVVIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVT
                     GLIKANLPSRISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFAS
                     EFEIEKIVDFLKDQQSVEYDESFLKDQQSVGVTTNESFDGEADELYEEAKRVILEDGK
                     TSISYLQRRLKIGYNRSANIIEQLTQNGILSEPDAKGQREIL"
     gene            complement(1914..2186)
                     /gene="rpsO"
                     /locus_tag="SB815_000952"
     CDS             complement(1914..2186)
                     /gene="rpsO"
                     /locus_tag="SB815_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEG0906695.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            2361..2771
                     /locus_tag="SB815_000953"
     CDS             2361..2771
                     /locus_tag="SB815_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HEG0906696.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            2758..4932
                     /gene="flhA"
                     /locus_tag="SB815_000954"
     CDS             2758..4932
                     /gene="flhA"
                     /locus_tag="SB815_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEG0906697.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTAAPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            4941..5987
                     /locus_tag="SB815_000955"
     CDS             4941..5987
                     /locus_tag="SB815_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEG0906698.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKSVKFYNSNYGKEINENFNS
                     IIGDIEKDENFGKAIILITDLNLNLNQCEEFEKICKEKNTKIFLLDHHQSGEECAQKY
                     SWYLLDSKRCATKIVYDFFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFLGL
                     IANAKEINRVMFKESQIDYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKNDD
                     TLSNLISYFVVEKLSELKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFID
                     VSSRKTLSFRANGKIDVSLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLI
                     KSKELKKENNESKQ"
     gene            5971..6213
                     /locus_tag="SB815_000956"
     CDS             5971..6213
                     /locus_tag="SB815_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906699.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNIDNVLENSNKEGVDEILEVVEFLKNKYKDFFQ"
     gene            6210..6842
                     /locus_tag="SB815_000957"
     CDS             6210..6842
                     /locus_tag="SB815_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906700.1"
                     /translation="MKKCILIFFSLYSLSFANIYEKLNDFAYEKKPNKDFKIQEVKLV
                     QFSQENKDCLELLIEASQVRILNSYNSCQKLSKDESFQKFLNEDFLKLYKNNGYLINE
                     NLQNLKNTMQDIMIYYKLRYSFSKDVKDMSKNKNLDILNIDEKDGGTLLYKINNQACV
                     GIELTRHDSRMAMKIYGIENLDKECKLFIQSPSFKDLSYTKKDFKWYYLE"
     gene            complement(6830..6970)
                     /locus_tag="SB815_000958"
     CDS             complement(6830..6970)
                     /locus_tag="SB815_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906701.1"
                     /translation="MKNLSIQEKKDLDNCVFQNLGRQDTFTLSVVFKNFYLKIKAFIY
                     SK"
     gene            7178..8164
                     /locus_tag="SB815_000959"
                     /pseudo
     CDS             7178..8164
                     /locus_tag="SB815_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
     gene            complement(8199..8840)
                     /locus_tag="SB815_000960"
     CDS             complement(8199..8840)
                     /locus_tag="SB815_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEG0906702.1"
                     /translation="MRNFFCKFVLALVFYSSFALANNSFITLNPSLPSSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFTFAQYKDEQNG
                     KDASYSDSLSHKLADVYFVSYFLNKQRNFSNLDEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(8924..10360)
                     /locus_tag="SB815_000961"
                     /pseudo
     CDS             complement(8924..10360)
                     /locus_tag="SB815_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
     gene            complement(10396..11196)
                     /gene="dsbI"
                     /locus_tag="SB815_000962"
     CDS             complement(10396..11196)
                     /gene="dsbI"
                     /locus_tag="SB815_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HEG0906703.1"
                     /translation="MSCIKMKDKCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMKPCEQCVYIRFDMLVMAIGGMIALINPANNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLYKWASSWFLPTGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFVVLFAMFIA
                     YVLDKNKPNAKIFALVIVALVLVLKFIGESKNPNQNIASLNQVVLRYS"
     gene            complement(11193..11552)
                     /locus_tag="SB815_000963"
     CDS             complement(11193..11552)
                     /locus_tag="SB815_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide isomerase"
                     /protein_id="HEG0906704.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNY
                     SVGLKAMNVSKADFENFLKTPEAAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAI
                     NSPEALIEITKELSKQK"
BASE COUNT         4352 a         1703 c         1885 g         3980 t
ORIGIN      
        1 aattttagaa aataaagtaa aacaagaaat taaaaaatta gaagaatatg atgcgataaa
       61 ttcaagcgat attatagaag ggaataaata tagttttaat agcccaaaaa caattaaaac
      121 agaaacagaa gaatcagaca aaataaatga aaataaaaat ctagataaag cagacaatat
      181 ctttgaattt gctcccattg tagaagagtt aaatcatcct tatatagaac ctactcctat
      241 aaaaaatata aatgaaatag ttatagaaga aaaaaataca ctcgatttta tccaaaatac
      301 agaaactaaa atcgataatg aaaaaacaaa tgatcaagaa attaaacttc aaaaagcagt
      361 tttagccaaa gaaattgcta ttaaccaagc tttattgcgt gaaatagagc agggcgaaat
      421 agaaaaacca aaagatttca ccttgccgcc attagatttt ttagctaatc caaaagaaca
      481 caaacaagaa atcaatgaaa gtgaaataga taaaaaaatt tataatcttc ttgaaaaatt
      541 gcgtcgtttt aaaataggcg gcgatgttat aagcacttat gttggtcctg tggtaactac
      601 ttttgaattt cgtcctagtg cagatgtgaa agtaagtcgt attttaaatt tacaagatga
      661 tttaactatg gctttaatgg caaaatcaat ccgtattcaa gctccaatac caggaaaaga
      721 tgttgtaggt atagaagttc caaatgatga aattcaaacc atttatttaa gagaaatttt
      781 acaaagtgaa gtttttaaaa acgctaaaag tcctttaacc atagctttag gtaaagatat
      841 agtaggcaat gcttttgtaa ccgatcttaa aaaacttccg catttactca tcgcaggaac
      901 gacaggtagt ggtaaaagtg tggggataaa ttctatgctt ttaagtcttt tatatcgcaa
      961 ctctccaaaa accttgcgtt tgatgatgat agatcctaag atgcttgaat ttagcattta
     1021 taatgacatt cctcatcttt taactcctgt tatcacagat ccaaaaaaag cagtcaatgc
     1081 gctttcaaat atggtagctg aaatggaaag acgctatcgc ttaatggctg atgcaaaaac
     1141 caaaaatata gaaaattaca atgaaaaaat gaaagaatta ggcggagaag aacttccttt
     1201 tattgtagta attatcgatg aacttgctga tttgatgatg actgcgggta aagatgtaga
     1261 attttatata ggaagacttg cgcaaatggc aagagcaagt ggaatccact tgattgtagc
     1321 tacacaacga ccttctgttg atgttgtaac aggactaatt aaagcgaatt taccaagtag
     1381 aatttcttat aaagtagggc aaaaaattga ctctaaagtt attttagatg ctatgggtgc
     1441 tgaaagttta cttggaagag gggattgttt atttactcct cctggaacaa gctctatagt
     1501 gcgtttgcat gcgccttttg caagcgaatt tgaaatagaa aaaatcgtgg attttctaaa
     1561 ggatcaacaa agcgtagaat atgatgaaag ctttttaaag gatcagcaaa gcgtaggtgt
     1621 tacaacaaat gaaagctttg atggggaagc agatgagctt tatgaagaag ctaaaagagt
     1681 aatcttagaa gatggaaaaa caagcatttc ttatttacaa cgccgtttaa aaatcggcta
     1741 taaccgctct gcaaatatta ttgaacaact tacgcaaaac gggattttaa gcgaacctga
     1801 tgccaaagga caaagggaaa tcttgtaaga tttttcttgt gtttttgata tataaaactg
     1861 attacaaaag aagaaattta aaaggcaaaa gccccgtaaa aagggcttaa aaattattta
     1921 tctctaagat ttaattcagt aattaactta ctataagaat tataatcttt tcttttaaga
     1981 taagataaaa gtctttttct ttgacctaca agttttagaa gtcctaatct tgatgaaaag
     2041 tcttttttgt agatttttaa atgttctgta agttctgcaa ttcttgcagt taaaagagct
     2101 acttgaactt ctgttgaacc agtatcacct ggttttttag cgaatttcgc aactatttct
     2161 gcttttttgg ccgaatccaa agccatgata gacctcctga ttggtaaaat aataaaatta
     2221 aagaactgta attttatctt aaaaagcaaa aaataaactg aatttatctt ttttagaagg
     2281 ttttgtcaaa atttaagtct ttttctaaga attatttatt ataattacag ctatttctgt
     2341 agttataaca aggagaatct gtgctattta ccaaagctag cgaatacgct ttactttctt
     2401 taatttatat ttctcaaaaa gaaacacctc aagatgtaga ttctttagct ttagagcttg
     2461 atattcctaa aagtttttta gctaaaattt tacaaacttt agctaaagat ggcttgttaa
     2521 aatcctttaa aggggcaaaa ggtggttttg ttttaatcaa agaaccaagt caatatacta
     2581 taaaagaaat tgttaatagt gccgaaaaaa aggatatcag tgtatttgaa tgcagtggtg
     2641 gcacttgtcc aaataataaa gaagaaaatt gcaccttaat gcctatgtta gtaaatttac
     2701 aaaataaagt agatgaattt ttagattcta ttactttaga agatattatg aaaaataatg
     2761 gcaaaaaata aaatagtcga tttagttttt cctttcttgg ggcctttaat tgctcctgtt
     2821 ttaaaagcta aaagcttaac tattgttggt tttttagttt gtattttagc tattattata
     2881 gttcctttac caagtcctat tttggacttt ttcttagctt taagcatagc tttatcggta
     2941 ttaattattt taatttctat ttatataccc aaaccgacag atttaacaac ttttccaact
     3001 ttaatcttga ttatcacttt atttaggctt tcattaaata tagctactac aaggatgatt
     3061 ttaagcgaag ggcaaaacgg ccctgaagcc gtgagtgaga ttatagcagc atttggagaa
     3121 tttgttgttg gtggaaatat ggtcattggt gtgattgtat tttgtatctt agtattgatt
     3181 aatttcatgg ttgtaacaaa aggtagtaca agggtttctg aagtacaagc aagattcaca
     3241 cttgatgcga tgccaggtaa acaaatggct attgatgcgg atttaaatgc agggcttatt
     3301 gatgaacaaa ccgctagagc aagacgtcaa gaagttattg ctgaagcaaa cttctatggc
     3361 gcaatggatg gttcttctaa atttatcaaa ggagatgctg ttgcaggaat tatcataact
     3421 attataaata tcataggtgg ttttttaata ggatcttttc agcacgatat ggctttaagc
     3481 gatgctgctt ctacctatac tattttaacc ataggtgatg gacttgtatc tcaaattcca
     3541 gggcttatta cttctactgc aaccgctata attatcactc gtgcaagcaa agatgaggaa
     3601 aattttgcag aaggaacttt aactcaactt ttaagcgaat atcgcacgct tttaatagta
     3661 ggttttgtac tttttatctt tgcgttagtg cctggtttgc caactttatc cttgggcttt
     3721 atggctttag tatttttaag ccttggctat cttaccaagc aggttaagga aggtaaaatt
     3781 gatataacta cagttaaaaa aagcaaacca agtgccgcag ctgcatctca aagtggagca
     3841 ggtgggacaa cggcagcgcc tgctaagaaa agcgaagaag aaattctcaa agaagaagag
     3901 cacaagatta acgatatact caaagttgaa attttagaac ttgaacttgg atacggactt
     3961 attaagcttg ctgaaaacga acttacagaa agaattcgct caatgagaag aagtattgct
     4021 gaaagtttag gatttttaat gccaaaaata agaataagag ataatttaag acttaaacca
     4081 aatgagtata gttttaaact caagggcgtg tctatagcaa gtgctgaaat ttatccggat
     4141 aaatatttag ccatggatag tggttttatc acagaagaga tagaagggat tgctacaaaa
     4201 gaacccgctt ttaactctga tgcactttgg attgatgcga atttaaaaga tgaagcaaca
     4261 ttaaatggct atatagtaat agatcctgca agtgttattt caacacatat gagcgaactt
     4321 atcaaagcgc acgcaagcga acttctcaca cgccaagagg tacaaaatct tcttgataag
     4381 gttaaaaatg attatccaat catcgtagaa ggtgctttag gtgttgcacc tgtaagtctt
     4441 attcaaaaaa ttctcaaaga cttgcttaag catcacatac caattaaaga tatgcttact
     4501 attttagaat ctgtaagcga tatagcagaa gtaagcaaga gttttgatat gattattgaa
     4561 catgtaaggg cgtccttagc taggatgatt acaaatatgt atttagatga taaaggaaat
     4621 ttggatattt ttatcttaga ctctgctagt tctgcggttt taatggaaaa tgtacaattt
     4681 agagatggaa gttatcactt gcctttaagt gtagctcaaa caggtacttt agtagatact
     4741 ctaagggctg aagttgccgc agtagcaaat ggtcgtatca agccttttat actttgcgtt
     4801 gaaccgcagc ttagaaaatt cattgctgat atttgttata attttagcat taatatagta
     4861 gtgttaagtt ttgcagaaat tgcagaaaat acaaatttta ataccgaggg tattattagg
     4921 atagaacttt aaggaatata atgaaaattt atcatctttc acatacagat cttgatggct
     4981 atgcttgtca atttatagta aatttttatt ttaaaagtgt gaaattttat aattctaatt
     5041 atggcaaaga aattaatgaa aattttaact ctattatagg cgatatagaa aaagatgaaa
     5101 atttcggaaa agctattatt ctaataacag atttaaattt aaatttaaat caatgcgaag
     5161 aatttgaaaa aatttgcaaa gagaaaaata ctaaaatttt tcttcttgat catcatcaaa
     5221 gtggcgaaga atgtgctcaa aaatattctt ggtatttact tgattctaaa agatgtgcaa
     5281 ctaaaatcgt ttatgatttt ttctctaaaa tctgtactcc tgttttagaa ctttcaaaat
     5341 ttgttgatgt ggttaatgct gttgatattt ggctaagcga ggatgaaaat tttgaacttg
     5401 gaaaggtttt tttaggcttg attgccaatg caaaagaaat aaatcgtgta atgtttaaag
     5461 aatctcaaat tgattatatg tttttcttgc ttgataaggc ttggaaattt ataggaaaag
     5521 aaaatgcaaa tattttactc gataatgcta ctcattttat aaaaaaggat tattttgcca
     5581 gaaaaaatga tgatactctt tctaatttaa tttcttattt tgtagttgaa aaactaagtg
     5641 agctaaaaga aaatttcagc atagaatatg aaggccataa aggcatctta acttcaaata
     5701 taggcaatac ttctgttatt ggaaatgatt ttttagtaaa aaatcctgat tatgactttt
     5761 ttattgatgt tagttctaga aaaaccttaa gttttcgtgc aaatggaaaa atagatgtaa
     5821 gtttaatggc taaaaattta gtaggtggtg gcggacataa aaatgctagt ggtggacttt
     5881 ttgcgacatt taaagatgga gcaaattata attatattaa ggctcaaatt attgatttaa
     5941 ttaaaagcaa agaacttaaa aaggaaaaca atgaatcaaa acaataataa aaccttaaaa
     6001 aatgaattag aagatttaca atatgagctt agcatagttt tagaagctat gcttttatac
     6061 gctggagtta aaagagaaaa attagaaaat gcaatagaag cttatattga taatatagat
     6121 aatgtactcg aaaattccaa caaagaaggg gttgatgaaa ttttagaagt ggtggaattt
     6181 ctaaaaaata aatacaaaga tttttttcaa tgaaaaagtg tattttaatt ttttttagtt
     6241 tatattcttt aagttttgct aatatttatg aaaaattaaa tgattttgct tatgaaaaaa
     6301 aaccgaataa agattttaag attcaagaag ttaaattagt gcaattttca caagagaata
     6361 aagattgcct tgaactttta atagaagcca gtcaagttag aattttaaat agctataatt
     6421 cttgtcaaaa attatctaaa gatgaaagtt ttcaaaaatt tcttaatgaa gattttttaa
     6481 aactttataa aaataatgga tatttgatta atgaaaattt acaaaatttg aaaaatacca
     6541 tgcaggatat tatgatatat tataaactcc gatattcttt tagtaaagat gtaaaagata
     6601 tgagtaaaaa taagaatttg gatattttaa atatagatga aaaagatggt ggcactttac
     6661 tttacaaaat caacaatcaa gcttgcgttg gaatagaact tacaagacat gactcaagaa
     6721 tggctatgaa aatatacggg atagaaaatt tggataaaga gtgcaaacta tttatccaat
     6781 caccttcttt taaagatctt tcctacacaa aaaaggattt taagtggtat tatttagaat
     6841 aaataaatgc tttaattttt aaataaaaat ttttaaaaac cacacttaaa gtaaaagtat
     6901 cttgccttcc aagattttga aaaacgcagt tgtctaagtc ttttttttct tgaatgctta
     6961 aatttttcat taacctaacc tttaaaaata ttgcaagatt ttattatagc gaaaaaactt
     7021 tatttttgct ttaaatatat aagttctatt ttaaatataa acgaatatta ttttaaggtt
     7081 taaagctttt ttcttaaaat gtaattaggt tttattgact ttttctaaat aaagtcttat
     7141 actgaattta aattacgcaa aataaggagg gaaattgatg aataaatttt ctatagtttt
     7201 aactttgttg ttatgtggaa gttgtgcttt agccttagat ccaaatttgg aaaaaactaa
     7261 gagtgcaaca ggtattgatc tgcctactgc caaatggaat ttacctaagg aattaaatga
     7321 agatggcact atagatgaaa ctaaaatgcc aaaaaattca gaatatagca aaatggttat
     7381 tttgggaaat aaaattctta atgaaacaag caaatatgtg ggtccacaag ccaaagatcc
     7441 taaaaaaaag atttgcggga aataatcttt cttgttcaag ctgtcatgct aatggtggaa
     7501 gtgtgcaaaa tcaatcgggt tttgtaggaa tttgggcaag atttccacaa tataatgcaa
     7561 gaggagataa agtaattacc ttagcagata ggatcaatgg ctgttttgaa cgctctacga
     7621 atggcaaaag aatgcctagt gatacacctg aaatgaaagc catgctaact tatatgcaat
     7681 ggttatctca aggagttcca gtaggagcta agatagaagg acagggactt aagaagatag
     7741 atttcatctt aaaagcagct gatcctaaaa aaggtaaggc aatttatatg gataaatgtg
     7801 ccgtttgtca tcaagaaaat ggattagggc ttaaaaatga ggatagcaca ggggcgtatt
     7861 atctttatcc accactttgg ggtgatgata gttataatac aggagctgga atgtatcgtc
     7921 tatcaaagct gcttcttata ttaaagaaaa tatgcctcaa ggtgcgcctg acttaagtct
     7981 tgaagatgct tatgatgtag cagcttacat gaattcacaa gctcgtccta ttaaagcaaa
     8041 tagaaataaa gactttccag atagaaagat taagccttta gatatggatg taggacctta
     8101 tgatgatagc ttttctacaa cccaacatcg ctatggacct tatacaaata tgatcaaaaa
     8161 ataattttta aggcaatttt tattgcctta aaaatttatt atttcatatt acttaatttt
     8221 ttaactagat cttctaaatc ttgcatcgaa ttgattgcgc ttgggttaat ttgatatttt
     8281 ccattaacaa caaaagcagg ggtaccatag gttttagcta tatcattagc tctttgaaac
     8341 tcgcttaaaa tttctttagc ttttggggta tttaaaaaat ttaatacttc atttttattt
     8401 acattcatag cctttaaacc tatgtcgtaa aattcatcta aatttgaaaa atttctttgc
     8461 ttgtttaaaa aataagaaac aaaataaaca tcagcaagtt tatgagataa actatcagaa
     8521 taactcgcat ctttaccatt ttgctcatct ttgtattgag caaaggtaaa aagctcattc
     8581 atttctttgg aaaattcccc attcattaaa cttacaggat agagtttaaa atgtaaattt
     8641 ggaaaagctt ctctcagttt ttcaagagtt ccaaatttat gatgattata acaatgtata
     8701 catttataag aaaatgcttc tattacacta ttttcagagc taggtaaact tggattaagg
     8761 gtaataaaac tattgtttgc taatgcaaaa cttgaataaa atacaagagc taaaacaaat
     8821 ttgcaaaaaa aattacgcat attatatcct tggttaaata aaattttcaa agataatttt
     8881 atttaaaaaa aataaataaa cccaaaaata aatttgggct tatttatttt ttaggattga
     8941 atgcttgatc aacactaaaa ggcattgctt gataatccgt gcctgaaccg ctgaattgaa
     9001 tttgaaccga aggctcctta gcgccccagt taaattcatc aattttaggt tttggttctc
     9061 caagacttac acctttacta agattaaaag ccattccagc gttgcactat aaaccataat
     9121 agaatcttta tctggttcat attgagttaa agaagttaca ggataaaacc attcattgcc
     9181 atttttatct acaggttgca ataaatattt ttgaaattct ttattccacc ctttatatgc
     9241 gcccaattcc tacctatacc tgctatatct ccaaatttgt cgctttcatc cattttggca
     9301 agctcttcat cgcttaaagt tttacccact ttacttgcat ctatatttaa acacactgca
     9361 ctttgatcta aagttttgat aatagtactt ctataaggat ctaaaatctt atacaatctc
     9421 caatcatcaa caacattacc attctcatct acttctataa tagtatcaca cactgtgcgt
     9481 acatgcttac tatcttggac gcaaagtatt tgttgaagaa ataatgccca ttttttgcat
     9541 attgtccata gcatgagaaa aaatctatat agacagcagg taatttgcga ttgaaaattt
     9601 ctcttcccag acatcgtatt ttacatatct ttgaccaaat ccccaagtta aagctccatc
     9661 tttgttttga cgaaaactta tcataattcc acgattgtaa atattacccc agttcattag
     9721 tttattgtta tcataatacc atctgatttc acccttggta tcttataata aagacatttg
     9781 aattttcatc ccattccata gcaccaccta caagattatt ccatacagat tatgagtctt
     9841 tgccagatta ttttccagga gcattattta ctaaatatag cctatctgaa aattttggat
     9901 ccatttttaa tactttcaca ttttcaaaaa gagttcctct ttgatcagtg ccttccgctt
     9961 ggctctatgc tagcccatgg agttgtaatt ttataaatct catcaatgac tttttgactt
    10021 ttaccatttg cggttttagt ataacttacc tttactataa gaaggataaa gtccaaaaat
    10081 aggaattcca ccatacgtct tagccatttt agaattcaca ttattaagaa atagtttgac
    10141 catttgattt ttttatatcg cttaagacat aaccattatt catgataata gcggtcaaag
    10201 gagacaatcc ataaggattc attttaatca tacccatttg tccttgaatt tgccaatcta
    10261 ttttcactct actaggacca cccatggcca ttaaagcatt aggtgcaagt agggtagaac
    10321 ccgccaaaat tgccatgcaa agagttttgc taagtctcat gatcaatcct ttaaaattat
    10381 ttaagacatc ctattttaag agtatcttaa aacgacttga tttaaactag ctatattttg
    10441 attcggattt tttgattcgc ctataaattt aagcaccaaa accaaagcaa caatcaccaa
    10501 tgcaaaaatt ttagcattag gtttattttt atctaaaaca taggctataa acattgcaaa
    10561 aagcacgaca aaacaacata aaaatgctat aagacagcaa attgccatat tcataaactt
    10621 taaactagga atcaaatacc aaccattact ataaagccca ttttcaaaat caggtggagt
    10681 tcctataaaa aatttttgaa aagcattgag atgattataa gcattttctg gaactacagg
    10741 ggtatccatc ccgcattctc ctgttggcaa aaaccaacta gaagcccatt tatacaaagg
    10801 taaattaaat ggataaatag gaatttcacg acatccatct acgcctgcaa aaggattttc
    10861 agaatgaacc acttcatgga tatgatttaa agttagacaa tgctccaagc caagccaaat
    10921 tccataaaaa gctaagctat aagaaaaaat ttttataata ttatttgcag ggttgattaa
    10981 tgcaatcata ccacctatag ccataacaag catatcaaat cttatataca cacattgttc
    11041 acaaggtttc ataaaaagat attcttgaaa taaaaaatgt gctatacaag taagtcctat
    11101 agtaactata atcaaaatca accaaggttt gcgcgtatct tgccatttgg aaagtgaaaa
    11161 atttctgcat ttatctttca tttttataca actcattttt gcttgctaag ttctttagta
    11221 atttcaatca aagcctctgg agagttgatt gcacttggaa cgatttgata ttttccatta
    11281 acaacaaaag caggggtgcc ataattttgc gaaataggat tggcaatttc ataacttttt
    11341 aaaagctctg cagcctctgg agtttttaag aaattttcaa aatcagcttt acttacattc
    11401 attgctttta aaccgacact ataattatca gcgttagcaa taggattttt aagaattaca
    11461 tattctttac cttcacttaa tgcgctagca cttatacctg ctaaaaaagc acatacaaca
    11521 atagatcttg ctaattttac tggaaatttc attaccctct ccttgaaatt tggttttgat
    11581 aaaacttttt attaagtttt tatgtaataa ctattataaa actattaaaa taaaaatatt
    11641 cttaaaaaat tttataacta agaatattta ctttaactaa aaatcaagaa taggggatta
    11701 aaaaatttaa tgcacaagtt atcattttta tgtatatttt gataataata taaaataatt
    11761 taatttttaa atattcttta tagttttcaa gaaaagtaaa atataatttt aatttacgaa
    11821 ataaaattat caatttttta cattatattt tatggataag tttatttcac tcaaaaggta
    11881 aaatcataaa agtatgtaaa aatagtagct taatctatat
//
LOCUS       DARBAR010000048        11912 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.048, whole genome shotgun sequence.
ACCESSION   DARBAR010000048 DARBAR010000000
VERSION     DARBAR010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11912
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.048"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..467)
                     /locus_tag="SB815_000964"
     CDS             complement(<1..467)
                     /locus_tag="SB815_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906705.1"
                     /translation="MLFGFDDKQEFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     LYAKNTKSLKMIFGNFLHNIMHVSFGKIQNINIKLNTYAFYFQKRKSLIFNTKISKNV
                     DLLRLLRIYLYGICFDAQILFSSYVYDKVSFQNNGKNIDQDGDLIIIDKKFAI"
     gene            complement(470..784)
                     /locus_tag="SB815_000965"
     CDS             complement(470..784)
                     /locus_tag="SB815_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HEG0906706.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            955..2379
                     /locus_tag="SB815_000966"
     CDS             955..2379
                     /locus_tag="SB815_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEG0906707.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEVTPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSFVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALKHFEKISPDYAKGIKKALEK"
     gene            2436..2906
                     /locus_tag="SB815_000967"
     CDS             2436..2906
                     /locus_tag="SB815_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HEG0906708.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKISLKILKFIKKF"
     gene            complement(2907..3563)
                     /locus_tag="SB815_000968"
     CDS             complement(2907..3563)
                     /locus_tag="SB815_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG0906709.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANS
                     HISGRSLDSPLTAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSDYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKISEPSVYRYLKKFKK
                     "
     gene            3731..4093
                     /locus_tag="SB815_000969"
     CDS             3731..4093
                     /locus_tag="SB815_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG0906710.1"
                     /translation="MSNYPKAIGPYSAYREVNGLLFISGQLPINPASGEIESSDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            4097..5536
                     /gene="dcuC"
                     /locus_tag="SB815_000970"
                     /pseudo
     CDS             4097..5536
                     /gene="dcuC"
                     /locus_tag="SB815_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            5549..6711
                     /locus_tag="SB815_000971"
                     /pseudo
     CDS             5549..6711
                     /locus_tag="SB815_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
     gene            6721..8088
                     /locus_tag="SB815_000972"
     CDS             6721..8088
                     /locus_tag="SB815_000972"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG0906711.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            8097..9437
                     /locus_tag="SB815_000973"
                     /pseudo
     CDS             8097..9437
                     /locus_tag="SB815_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
     gene            9519..9743
                     /locus_tag="SB815_000974"
     CDS             9519..9743
                     /locus_tag="SB815_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEG0906712.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            9740..11581
                     /gene="feoB"
                     /locus_tag="SB815_000975"
     CDS             9740..11581
                     /gene="feoB"
                     /locus_tag="SB815_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEG0906713.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGEFVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGI
                     YILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWYLVWFMVYNKAKMYLKKAG
                     TFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKSIEPIFQPLELDWKL
                     SVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIY
                     NPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN"
     gene            complement(11578..>11912)
                     /locus_tag="SB815_000976"
     CDS             complement(11578..>11912)
                     /locus_tag="SB815_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HEG0906714.1"
                     /translation="TFIEQNFDENPMPSKDFWKYLEISFILVKGEFLKDKNDFLIAAK
                     NYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNIT
                     KISSLKAS"
BASE COUNT         4229 a         1812 c         1901 g         3970 t
ORIGIN      
        1 aaaattgcaa atttcttatc tattataata agatcaccat cttgatctat attttttcca
       61 ttattttgaa aagaaacctt atcataaaca taggagctaa ataaaatttg cgcatcaaaa
      121 caaatgccat aaagataaat tcttaaaagt cttaaaagat cgacattctt agatatttta
      181 gtattaaaaa tcaagctttt tcttttttga aagtaaaaag cgtatgtatt aagcttgata
      241 tttatatttt gaatcttacc aaatgaaaca tgcattatat tatgcaaaaa atttccaaat
      301 atcattttta aactcttggt attttttgca tataaaagag gaatttttag agcactatca
      361 acgctcgcat tatattgagt taaaaaagtc aacataagct cttgattgtt taaatagcga
      421 taaatttgcg gtataaattc ttgcttatca tcaaatccaa ataacatctt taacctttat
      481 agcaagaaaa ttctttatta agattaaaaa ttttacaata ttcacaatac acacaactta
      541 cacttctttt tgcacaaact aatggaattt tacgcttttt agcttcattt ttgatttttt
      601 tcatagtatt atgatttaaa aagcttgtta acattactat acattctgta tcacaaggaa
      661 tcggcttgcg attaactcta ttttcattac gtgcatccca gtgttctatt tttttagcac
      721 ctaaatcatg taaaacagct ctaataggag tgatttcatc tgcaccaata accaaaactg
      781 acataaattc tcctttgtga tttttaaaat atattttgat aattattatt ataatataaa
      841 aaaactaaat ttattttgaa atttattatc aataaaatgc aattattcag ttaattttaa
      901 tttttaatag atataattta ctaattaata aaatttatta tttaggagaa aacaatgaaa
      961 aaattgacta acgattttgg aaacattata gctgataacc aaaattcatt aagcgcaggc
     1021 gcaaaaggac ctttacttat gcaagattat cttttgcttg aaaaacttgc tcatcaaaat
     1081 agagaaagaa ttccagaaag aaccgttcat gctaagggaa gtggagctta tggcgaaata
     1141 aaaattacag cagacttaag tgcttatacc aaagctaaaa tttttcaaaa aggcgaagtt
     1201 actccattat ttttacgctt ttcaacagta gcaggtgaag caggtgcagc agatgctgaa
     1261 cgcgatgtga gaggttttgc tattaaattt tacactaaag aaggaaactg ggacttggta
     1321 ggaaataaca ctccgacatt cttcatccgc gatgcttata aattccctga tttcatccat
     1381 actcaaaaaa gagatccaag aactcatcta agaagtaata atgctgcttg ggatttttgg
     1441 agtttatgtc ctgaaagttt acatcaagta accattctta tgagcgatag aggaattcct
     1501 gcaagttatc gtcatatgca tggatttgga agccatactt atagttttat taatgataaa
     1561 aatgaaagat tttgggtgaa attccatttt aaaacccaac aagggattaa aaatcttacc
     1621 aaccaagaag ctgccgagct tatagcaaaa gatagagaaa gtcatcaaag agatctctat
     1681 aatgctatag aaaataaaga ttttccaaaa tggaaagttc aagttcaaat tcttgctgaa
     1741 aaagatatag aaaaacttgg atttaatcct tttgatttaa caaaaatttg gcctcatagt
     1801 tttgtacctt tgatggatat aggcgaaatg attctaaaca aaaatcctca aaattatttt
     1861 aatgaagttg aacaagctgc ctttagtcca agcaatatcg ttcctggaat tggctttagc
     1921 cctgataaaa tgttgcaagc tagaattttt tcatatcctg atgcacaaag atatagaata
     1981 ggaactaatt atcatctttt accagtaaat cgtgcaaaaa gcgaagtgaa tacttacaat
     2041 gtcgctggtg ctatgaattt tgatagttat aaaaatgatg ctgcttatta tgaaccaaac
     2101 agctatgata atagcccaaa agaagacaaa agctatcttg aacctgattt agtcttagaa
     2161 ggcgtagcac aaagatatgc tccactagat aatgactttt atactcaacc aagagcttta
     2221 tttaatctta tgaatgatga tcaaaaaact caactttttc ataatatcgc cgcttctatg
     2281 gaaggagttg atgaaaaaat tatcactaga gctttaaaac attttgaaaa aatttcacct
     2341 gattatgcaa aaggaattaa aaaagcttta gaaaaataat ttttacttgc cacttttggt
     2401 ggcaaactaa agattataat aattaaggaa aaacaatgac aactcttagt ttagaagaag
     2461 aaaaaagatt tgaagagctt tgcaaaatgg cttttaattt tgcaagaaat aatgaatgtg
     2521 aaaatcttaa aatcatgata gaagcaggtt taaatgtaaa tttaaaaact cataaaggcg
     2581 atagcttgct tatgcttgca gcttataata attcttatga aagcgctaaa atgcttttag
     2641 aaaaaggtgc aaaagtagat gaaaaaaacg atcgtggaca aaccccatta gcgggagttt
     2701 gttttaaagg atacttacct atgtgtgaac ttttagttaa atatggagca aatattgatg
     2761 aaaacaatgg tttaggaatg acaccttata cttttgctat tatgtttgga cgcaaagatg
     2821 tggcagaatt tttactcaaa aaatctaaaa ataatttttt aaagaaaata agcctaaaaa
     2881 tactaaaatt tatcaaaaaa ttttagttat tttttaaatt tcttcagata cctatagaca
     2941 ctaggttctg aaatttttaa aaattttgct acgataggaa ccgccccttt tatattaaaa
     3001 ataccttttt catatagctt ttcagcaatt tcttcttttt gagtaatgct taattgataa
     3061 tcagaattta aataactaga atctacgctt tgaactaaaa tatcctctat cgagtgactt
     3121 aatgtttcta tacttgaatc attttgagaa aaactaatat ttcctaaaat atcacccata
     3181 tctccaattt tttctaaatc aatcatcttg catattaaat ctctcataat gctagtatca
     3241 tgattgatac acaaaatacc tactaatttg tcatgatttt taataaaaaa agtagatcct
     3301 ctaattaatt ttgattttcc aacaagagcc ttataatcac ataaaaaatc tttttctaaa
     3361 tattttttat tttgcataag ctcacttgca aaagcagtca agggagaatc taaacttctt
     3421 ccactaatat gactgttagc aattgctgca atataggccc catcttcagt aattacatga
     3481 aaaactatct catattgctc acctaaaact tctcctaaaa aatatgtcaa ctttataaat
     3541 tgttgttttt gtccctcatc cataaaactg ccttcaataa aaaattaata taatattaaa
     3601 ttctactctt tatactttaa aacatttctt aaaaataaaa ttttattatt atgataataa
     3661 actattgaca aattattatt gtagtgataa aatgcattct gcttaatcta tatttaacaa
     3721 aggagaattc atgtcaaact atccaaaggc cattggtcca tactcagctt acagagaagt
     3781 aaatggactt ttatttatat caggacaact tcctatcaac cctgcttcag gagaaataga
     3841 aagctctgat atcaaagaac aaaccaaaca atctttaaaa aatatcggtg ctatcttaga
     3901 agaaaatggt atcagttatg ataaagtgat taaaaccact tgctttttag ctgatattaa
     3961 tgattttgta gcattcaatg aaatttatgc tgaatttttt aaagctcctt atccagcaag
     4021 aagtgctttt gcggtaaaag atctaccaaa aaaagctaaa gtagagatag agatcatcgc
     4081 tcaaaaagga taaaacatgc taggtattgt tttttcttta tttagtgttt ttttgcttgt
     4141 ttttatgctt tataaaaaaa tcaatgctca catggcattg cttttaagtg gtttactttt
     4201 actttcctta gctgctcttt ttggactttc tccacatatt gtcgctaaag gttctttaaa
     4261 tttaggtttt tttgatattt ttcaagtttt caatcaaacc atgtcaagta cattagtagg
     4321 gcttggactt acacttatga ctatagcagg tttttctgct tatatggatc atgttggggc
     4381 ttcttataca ctctttaaag tttttgaaaa acctttaaaa atggtaaagt ccccttatat
     4441 cttactttta gttgcatatt ttatcgtgca atttttggtt ctttttatcc cttctcacgc
     4501 aggtttggca cttttactta tggttactat gtatcctata cttgtacttc tggtgtttca
     4561 aaactttctg ccttaagtgt gattgcgatt tgtcaatata tcgatcatgg acctggaagt
     4621 ggaaatgtga tcatggcatc aaaagtagct gaagttgatc ctgcaattta ttttgttcat
     4681 tatcaactcc ctacaacctt gcctatcatt atagctgtag gtattgcgat atatctttgc
     4741 aataaatttt ttgacaaaaa agataatttt gccttcaatg cacaagaaat tgaaaaagaa
     4801 ctaaatgaaa atgaaggtaa agaaaaagaa cttaaaaagc ctcctagaat ttatgcgatt
     4861 ttacctataa ttcctttggt tttaatccta ggatttagtt ccgtgcttga tagcatcttg
     4921 gttttaatgg gaataagtag tgcccaagaa gttaaagcag ctgctagcac tgcaattaaa
     4981 atgaatgttc cagtaagcaa tggtgatttc aacttttgtg gctattattt ttgaaatgat
     5041 acgctataaa agcgttgtag aaactcttaa ttctattatg attttcttta aaggaatggg
     5101 acatttattt gttatcacag tttcactcat cgtttgcggt caagtatttg caagtggtct
     5161 tttatctgta ggttttgtag atactttaat agaattttgc aaaaatgcag gatttggagt
     5221 tttggctatt attatcgccg tttcaatctt gcttgcggtt tgtgctttct taatgggttc
     5281 aggaaatgcg gcatttttta gctttgctcc acttatccca aatatagcaa aacactttgg
     5341 agttgaaact atcaccatga tagcaccaat tcaaatcatg acgggctttg gaagatgtgt
     5401 tagtcctatt gcaccagcga tcttagctat ctcagctatt gcaaaagtaa gtccttttgc
     5461 cgtagttaaa agaacagcta ttcctatgct tgtagcggct attgtaaatg ttattatgac
     5521 ttatatttat ctttaaaaag gagaaaaaat gaactcaaaa actaaactta ttcattgtgg
     5581 cagaggcgat caaggtgctg aagtaagatc agtcaatcct acacttatgc gtgcatcaac
     5641 catacttttt aaagatcacg caacttggaa aaatacagag aattaagaaa aacagatcgt
     5701 gttttaagct atggagctag aggaacaaca accaattttg aacttgaaaa acttatttgc
     5761 actctagagg gtggttatag agcacaactt tttccaacag gacttgcagc attagccatg
     5821 gtacttttaa actatgcaag caaagatgca cattttttaa tcactgatgc aatttatggg
     5881 cctgtaagaa cgatttgcga attattttta gacaaaatag gcgttgaaat tgatttttta
     5941 aaagctgatg caagtgatat agaagaaaaa atcaaaccta ataccaagct tatcctatgc
     6001 gaaagtccag gttctatact ttatgaaatc atagatttac caaaactttg caaaattgct
     6061 catgcatata atatccctgt agctattgac aatacttatt ctagtggata ttttctaaat
     6121 cctttagaac ttggagtaga catttcagtt atcgccgcta caaaatatct tagtggacac
     6181 tctgatgtaa ccatgggtat agtagtaatc aacgaaaaag aatggaaaaa ttttgacaaa
     6241 cttccagaag ctttaggctt tacaacaagt cctgatgatg cttacttagt acttcgtggt
     6301 atgagaacac tagatgtaag aatgaaagct catgaaaaaa gtgctgatga aattgtagag
     6361 tttttacaaa gcagaaaaga aattaaaaca attttctatc caaaactcaa atcccaccca
     6421 aatcatgaaa ttttcatgcg tgatcataaa ggtgcaaatg gtatgattac catagaattt
     6481 gcagaaggtt ataacaaaga tgatgctatt aaatttgtag ataaactaga atacttttca
     6541 attggtgcta gctggggtgg atatgaaagc ttagccaccg taactactcc gcctagaact
     6601 gcaacagacc taagtgcaag agggctattt gtaagatttc atataggtct tgaagatact
     6661 aaagatttaa ttgctgattt aacacaagct tttgatagta ttaaaaaata aggagataag
     6721 atgacaggaa ttagcgtatt tgatcataga ttactagcag actcatggag cacgcaggaa
     6781 atgcgtgcta ttttttgcga acaaaaccgc atacaaaaat ggctcgatgt tgaagcagct
     6841 ttagcaaaag cacaagcaaa acttaaaatt atccctaaaa aagcagctga tgagatcgca
     6901 aaaaaagctc attataaatt tatggatatg gactttatct ttgctgaatt taaaaagacc
     6961 aaacaccctt tagttcctac tgtaagagga ttagaaaaag cttgcgataa taatttaggc
     7021 gaatatgtac attttagagt aaccactcaa gatatcatcg atacaggact ggttttacaa
     7081 tttaaagaag caatgactct tgtaaaaagc gaattaaaag ctatcgcaaa agccttagcg
     7141 aaactagcta aaacccataa aaacactgct atgatgggaa gaactcttgc tttacaagct
     7201 ttaccgatca cctttgggca taaggtagcc atctggctta gcgagcttga tcgtcatttt
     7261 gaaagaatac ttgaacttga aaaaagactt tatgtaggca gcatagtagg agctgttgga
     7321 accaaggcga gtttaagcga tgaatgcaac gaagtagaaa agctaacttt agagaattta
     7381 ggacttgaag tgcctaatat ctcttggcag agcacacgtg atcgctttat agagcttggt
     7441 tttgtactag gcaatatcaa tgcaactttt aacaaaatcg ctcatcaatt actcatactc
     7501 tcacacaatg aaatcgatga agtagcagaa ccttttggca aaggacaagt aggatctagc
     7561 actatgccac acaaaagaaa tcctgcagta agcgaaaatg cagttacagt aagcaatgcc
     7621 tttaaggcaa atttagccat tttaagcgat attgaaagac acgagcatga aagagatggg
     7681 caagtttgga aaatggaatg gaaactttta cctgaaatgt ttttaatgct ttctgtggtt
     7741 ttagcaaata tgaaatttgc tcttagtgac ctagaagtta aaaaagataa aatgcttaaa
     7801 aatcttgaca ctcttaaagg ctttgtactg gcagaacgcg ttatgtttgc actaagcgat
     7861 cattacggca aacaacacgc tcatgaaatc gtttatgaaa acgctatgct aggtatcgaa
     7921 caacaaaaaa ctttcaaaga agtattgctt gcagatacaa gagtatctca agtcttaaaa
     7981 gaaaaagata tcgatgcttt acttgatgca acaagttatg taggatatgc accaaaactt
     8041 gtagatgaat ttttggcaaa aatcaaaaat agcgctatct taaaatagga aaaatcatgt
     8101 tctatagcga aattttggcg gattttattt tcaatcttca gtatgaaaat atccctaata
     8161 cagttgttca aagagctaaa gagcttatgc ttgatagtct tggaacggct atagcagcga
     8221 gtaaggaaga atgcgtttta aatgccttta aagcttttga aaatttaagc acagaaaaaa
     8281 atacccctgt atgggtacat gataaaaaat tagatcccat ttatgcagcc atgctaaatg
     8341 gcattgcttc tcatgcactt gattttgatg atacgcatac agaagctatt ttgcacgcaa
     8401 gtgcgatttt aactcctctt tgtttaagtt atggttttca tgttagcaaa gatgcgaaaa
     8461 aaatcatcaa agcttttata ataggctggg aaattgcagc tagagtaggc attgcaagca
     8521 aaggcacttt tcataagcgt ggttttcata ccactgctat tgcaggaatt tttggaagtg
     8581 tgagtgcaag tgcaatcttg ctggatctta acaaagaaca aatcatcaat gctttaggac
     8641 ttgctggaag ttttgcaagt gggattaatg agttcttatc caatggctct aattcaaaag
     8701 tcttacatat agcaaatgcc attaaaaatg gaattttaat cgctaacttt gctaaaaata
     8761 acatgagtga acctctaagc atttttaaag gtagggataa tatctttaaa tgttttggta
     8821 tagaacaaga atgcgataaa acagaacttg ataaaggctt gggtgaaatt tagcaaagta
     8881 tgcaagtttc tataaagcct tatccaagct gccattttgc tcatggtctt attgattgtg
     8941 ccatagcttt aaaaaatgat ggcttaaaag cagatgaaat caaaagcatt cgttgttttg
     9001 tagatgaagt tcctatttct tttatttgcg atcctttaga agcaaaatac actccaaaca
     9061 gtgcttatga ggccaaattt tccatgcctt ttttaatggc tctaggattc tttgatggta
     9121 aaatcactct tgaatcttat gaaaatttaa agcgtgaaga agtactagaa tttgctaaaa
     9181 aaatcagtta caaaaaaagg aaatctcaag gctttccaaa atattttcca gggcatttag
     9241 aagccagttt gcaagatgga cgcataatcc aaaaagatgt ttttatcaat aaaggtaatt
     9301 ttgataatcc actaagtttt gaagaattaa aagctaaatt tttagccaat gcacaaattt
     9361 accttgataa tactaaagct aacaaaattc tagatcaaat catcaatcta gaaaatttaa
     9421 accacttttc tttttaaata tttatccttc tttttacaag aaggataatt tcattacact
     9481 tttttattat aatatttatt attaatttag gaattacaat gactttaaac gagttaaaag
     9541 atggacaaaa ggctattatt gtcaatttaa acgctcacaa agaactcaaa aatagacttt
     9601 taagctttgg atttattaaa aataaaaact tgaaaaaaat tcactcctct ttaaaaaatg
     9661 ccaccataat ggtagaactt gatacaagtt gtgttatcct aagatctgat gaagctaaaa
     9721 ccatagaagt gaatcttata tgaaaaaaat caaaatagct cttgtaggtc agcctaatgt
     9781 aggcaaaagt cttcttatta atgcgctttg caaagccaat atgaaagtag gaaattttag
     9841 cggagttact atagaaaaag caagtgcaaa aactttttac aaaaactatg aatttgaagt
     9901 cattgatttg ccaggaactt attctttaga tggatatagc gaagaagaaa aaatcacacg
     9961 tcatttttta aatcaaaatg actatgatgt tattgttaat gttttagatg ctactaattt
    10021 agaacgcaat cttatcctta gtgcagaact tttaagcctt aataaaaaaa tgcttttagc
    10081 tttaaatatg tgtgatgaag ccaaaaaaga aggtatagag cttgacactt ctattttaag
    10141 ccaagaattt caaagtcaag ttgttgaaat ttcagcaaaa acaaaagaaa atttagaact
    10201 tttgctgcaa aaaattatta ttttatttga aagtaaattt attccaagat cccaatttta
    10261 cactccgctt tgcgaaaaaa gtccagaaaa agaagattta ttatatttta ttaatgaact
    10321 ttcaaaaaaa attatcacac ataaaaaaga agagagaaat ttaaccaaaa aaatcgatgc
    10381 cttacttatc cataaattct ttggcttacc tatattttta tttttaatgt ggcttttatt
    10441 tcaactcacc tttagcttag gacaaattcc tatggattat atagaatcag gctttaatgc
    10501 cttaggtgaa tttgttaaaa acaatatttc taataccttc atcgcttcag ctttggctga
    10561 tgggattatc gcaggtgttg gtgctgtgat actttttttg cctaatataa tgattttatt
    10621 tttaggcata gctcttttag aaaccacagg ctatatgtca agagtagctt ttttacttga
    10681 tgggatttta cataaatttg gtttacatgg caaaagtttt attccactaa tcactggttt
    10741 tggttgttca gtacctgctt ttatggctac acgcactctt aagaacaaaa gagatagact
    10801 tttaactctt tttgtgatca attttatgag ttgcggggca agacttcctg tatatgtgct
    10861 ttttatcggc gctttttttc caagtgaaaa agcaggaaat tatctttttg gaatttatat
    10921 tttaggtgcg attttaggac tttgtgctgc aaaattttta agaatgacag catttcgtgg
    10981 acttgatgaa ccttttgtta tggaaatgcc aaaatatcgt atgccaaatt ggtatttagt
    11041 ttggtttatg gtttataata aagccaaaat gtatcttaaa aaagcaggaa ctttcatact
    11101 tttggcctct ttgcttatat ggtttgctag taattttcca aaaagtgaag aaaatttaaa
    11161 tgattttaat gctcaagaaa gagctataga acaaagttat ttaggacaat ttggcaaaag
    11221 catagaacct atttttcaac cccttgagtt agattggaaa ttaagcgtat ctttaatcag
    11281 tggtttggct gctaaagaag tgatgatttc aactatggga gtgctttatt cactaggaaa
    11341 agatgtagat gaaacaaata atgatttaaa aggaattatc gctaaaaata tacctatacc
    11401 aagtgcagtg gcttttattt tatttgtaat gatttataat ccttgctttg cagcaactat
    11461 agttttttca aaagaaagtg gaaagctaaa atatactctc tttctctttc tttttacctg
    11521 cacaagtgct tatatagtag cttttatagg acttcatatt gctaaaattt tattaaacta
    11581 acttgctttt aatgatgaaa ttttagtaat attatcttca aaagctttta aaatgctata
    11641 agcaatacct tcaaaatcaa gcccaccgca aagatagatt aaagtcatac gaaaagattt
    11701 actcacatca agctttggtt tttcagcgtt catatttaac ttaaaatcat aaggacttgc
    11761 atgtttaaaa gcataatttt ttgccgcaat taaaaaatca ttcttatctt ttaaaaactc
    11821 tcctttaact aaaataaagc ttatttcaag atatttccaa aaatcttttg aaggcatagg
    11881 attttcatca aaattttgct ctataaaagt at
//
LOCUS       DARBAR010000049        11456 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.049, whole genome shotgun sequence.
ACCESSION   DARBAR010000049 DARBAR010000000
VERSION     DARBAR010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11456
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.049"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            115..1302
                     /locus_tag="SB815_000977"
     CDS             115..1302
                     /locus_tag="SB815_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG0906715.1"
                     /translation="MTLIAILCLYTALLSWISYAQIRFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIISIAWIGFGFLYLKELLILNNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTVKLFIKDTMKSLILTLIFGFLILYTLLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGAITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLISPMLNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYTFFYLSHPSISDRIK
                     ALS"
     gene            1299..2114
                     /locus_tag="SB815_000978"
     CDS             1299..2114
                     /locus_tag="SB815_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEG0906716.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIKI
                     DHEPYFELIKRFKSGEPFEYIFEKVDFWGLEFKIKKGILIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELGLKITACDINPKALELALENAQLHKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQGYNRAFIAKFTNMRYDKK"
     gene            2127..2597
                     /locus_tag="SB815_000979"
     CDS             2127..2597
                     /locus_tag="SB815_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HEG0906717.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFQIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENATKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            2636..3385
                     /gene="flaC"
                     /locus_tag="SB815_000980"
     CDS             2636..3385
                     /gene="flaC"
                     /locus_tag="SB815_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HEG0906718.1"
                     /translation="MMISDATMMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATDGLSID
                     SQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            3420..4052
                     /locus_tag="SB815_000981"
     CDS             3420..4052
                     /locus_tag="SB815_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEG0906719.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(4064..7666)
                     /gene="dnaE"
                     /locus_tag="SB815_000982"
     CDS             complement(4064..7666)
                     /gene="dnaE"
                     /locus_tag="SB815_000982"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEG0906720.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGIEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGLEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            7895..8101
                     /locus_tag="SB815_000983"
                     /pseudo
     CDS             7895..8101
                     /locus_tag="SB815_000983"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SelT/SelW/SelH family protein"
     gene            complement(8114..8443)
                     /locus_tag="SB815_000984"
     CDS             complement(8114..8443)
                     /locus_tag="SB815_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HEG0906721.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(8440..9780)
                     /locus_tag="SB815_000985"
     CDS             complement(8440..9780)
                     /locus_tag="SB815_000985"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEG0906722.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAI
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKTRK"
     gene            complement(9804..10217)
                     /gene="uraH"
                     /locus_tag="SB815_000986"
     CDS             complement(9804..10217)
                     /gene="uraH"
                     /locus_tag="SB815_000986"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEG0906723.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
     gene            complement(10350..10706)
                     /gene="rplS"
                     /locus_tag="SB815_000987"
     CDS             complement(10350..10706)
                     /gene="rplS"
                     /locus_tag="SB815_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEG0906724.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
     gene            complement(10717..11421)
                     /gene="trmD"
                     /locus_tag="SB815_000988"
     CDS             complement(10717..11421)
                     /gene="trmD"
                     /locus_tag="SB815_000988"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEG0906725.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEVFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLEEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
BASE COUNT         3946 a         1956 c         1521 g         4033 t
ORIGIN      
        1 ttttataaat atataccaac ttagttgaaa agaatattat tttagatttt aaactattaa
       61 ctttatttca ttattttaag ctagaattcg caaaaaacta atcaaggaaa aataatgact
      121 ttaattgcaa ttttatgtct ttacacagca cttttatctt ggatttccta tgctcaaatt
      181 cgtttcttag aaagagaaaa agacaaacaa gctcaaattt taagcgaaaa agactatcaa
      241 aatgcagcag atattgccat cgaaaatgaa aaatttaaac tattttccaa tttttataat
      301 ttaatcatca gtattgcatg gataggtttt ggatttttat accttaaaga attacttatc
      361 ttaaacaaca ctcgttttga aaatacttta tttttattat cttttttaat aatcacaagt
      421 attttaaatc tacctttaag tatttatgaa agttttatca aagataaagc ccatggtttt
      481 tcaaatatga ctgtaaaact ttttatcaaa gatactatga aaagtcttat tttaacttta
      541 atatttggat ttttaatcct ttatactttg cttttttgct atgatttttt tggaactttt
      601 tggtggattg cggcctttat ttttgccttt tgtattatag tgattataaa tctcatctac
      661 cctaccttaa tagcacctat ttttaataaa atgaaaaaac tagacgatga aaatttgctg
      721 aaaaaaatca gctctttgat gaaacaatgt gggtttagtg caaatggggt ttatgttatt
      781 gatgcaagca aaagagataa gcgtttaaat gcttattttg gtggactttt taaaagcaaa
      841 agagtggtgc tttttgatac attattaaaa gccttaaatg aaagagaact tttagctgtt
      901 ttaggacatg agcttggaca ttttgttcat aaggatatta tcaaagcttt atttaacggc
      961 gctataacta tgtttttact tttttttgtt tttgcaaatt tacctgaatt tgtttactta
     1021 gaaagtcatc tagaaggagt aaatggtggc gtgtttgctc ttttgtttat cttggcgaat
     1081 atttttagct ttttaatctc tcctatgctt aatgccttaa gtagaaaaaa tgaatttgca
     1141 gctgatcaac acggagctaa agttacaagc aaagaagata tgaaaaatgc attgatagct
     1201 ctagcaagag aaaataaagc ttttatcaaa acaagtaaaa tatatacatt tttttatctc
     1261 agtcatccaa gtattagtga tagaatcaag gctctttctt gactataaaa aatgctctta
     1321 tggaagctaa atctagctta aaaggttatg aaaatgaagc ggtatttata ctttgcgaat
     1381 atctaaaaaa agataaagct tggttatttt taaaccaaga tataaaaata gatcatgaac
     1441 cttattttga gcttataaag cgttttaaat ctggagaacc ttttgaatat atatttgaaa
     1501 aagtggattt ttggggctta gaatttaaga taaaaaaagg cattctaatc cctcgctacg
     1561 atagtgaaat tttacttttt caaattttaa atttatgcaa aaaaaatact tttaatggga
     1621 ttttagaaat aggatttgga agcggaattt taagcattgt tttagccaaa gaacttgggt
     1681 taaaaatcac agcctgtgat atcaatccca aagccttaga attagcttta gagaatgccc
     1741 aattacacaa agtcgatcac ttgattgact ttaaactttg taattttaag caaattaaag
     1801 aaaattatga ttttattttt tcaaatccac cttatattaa aaattcatat cctatagata
     1861 tttgggtgca aaaagaaccc aaagaggctt tatttggcgg agaaaaagga tatgaaattc
     1921 tagaagaaat catacatttt tcccttgata aaaaagttaa atttttagct tgcgaatttg
     1981 gctatgatca aaaagaaatt ttggaaaaaa ttttatatca aaataatttc attgttgatt
     2041 ttttcaaaga tgaacaaggt tataatcgtg cttttatagc taaatttaca aatatgcgtt
     2101 atgataaaaa ataaaaggag aaactcttga aagctgttaa tttattttta cttgcctcca
     2161 tcataggggt tgaactcata ctaggaatag ttgttgcacc aacaattttt tttcctcaaa
     2221 atcttatagg agaaggagtg ttgagccatt ttcaaagtgg cttaatgatg acgcaaattt
     2281 ttattaagat gggatatttg ctgatttttg tttcagtggt taatttttta tatgaaattt
     2341 attctcttat aaaagatgaa atgaaatttc aaataaaatt ttcaaaattt atgctgagtt
     2401 tgcttatttt gattttaagc ttaatatttg ttttttattt tactaatacc ataattgaac
     2461 tccaaaactt aggcgaaaac gctacaaaaa ctcaagaatt tatcagtatc cataatgcaa
     2521 gtgaagtggt gattaaaatc atcttgataa tgcaagtttt tttatatttc ttaagcttta
     2581 aaatagcaaa aaaatgataa aatattaaat aaatccaaaa gagaaggagt aggccatgat
     2641 gatctctgat gcaactatga tgcaacaaaa ttattattta aataatgcac aaaaagctag
     2701 cgataaagct ttagaaaata ttgcagctgt tcgcgcaata agtggagttg atagtgctaa
     2761 tttagctatt gctgattctt taagatctca atcaagcact atagatcaag gtgtcgcaaa
     2821 tgcttatgat gctatagggg ttttacaaat tgcagatgct agccttacca atatctctca
     2881 aagcgcagat agacttaatg aactttcagt aaaaatgaac aatgctgcac ttaatgattc
     2941 tcaaaaagga atgctaagaa cagaagcaac acgcatacaa gaatccatca atgattcttt
     3001 taataatgca acttataatg gaaaaaatgt ctttcaaact atgaattttg tagtaggtag
     3061 cggaactgaa actacaaatt taaatccatt agcaacagat ggattaagca tagatagtca
     3121 agatagtatt acaaatttta tggatcaact tggaagttta agaagtgaaa taggctcagg
     3181 tatcaatgcc atcacatcaa atattaatgc aagtgttcaa aatagcatca actcaaaagc
     3241 agctgaaaat aatttactaa ataatgacat ggcaaaaaat gtcaatgatt ttaatgccaa
     3301 ttatctaaaa gaaaatgctg ctgcttttgt tgctgcgcaa tccaacatgc agcttcaaag
     3361 caaaattgct aatttattac aataaaataa gccctaaata gggcttattt tttatcaaaa
     3421 tgactttaga gcaaatttta gaaaaaacca aaaacgttcg tcttgtagcc gcaagcaagt
     3481 atgtcgatgc aagtataatt gaaaagcttt ttgatcaagg tatagtagaa tttggagaaa
     3541 atcaagtcca agctctagca caaaaaaaag aaaatcttga tgaaaaaaaa ctagacataa
     3601 agtggcattt tataggaacg ctacaaagca acaaaatcaa tctcttaatc aaacaaaaac
     3661 ctatattatg gcactcttgc aatggtatta aaatagctaa agctatggac aaaagacttg
     3721 attataaatt aaatacttta ttagaaatca atagtgcaaa tgaaaatagc aaaagcggtc
     3781 tagatccaaa tcaagccgta gaagaatatt tacaaataca agaagaatgc tctaatttaa
     3841 atctttgtgg cgtaatgagc ataggatcac acagccaaga taaagaaaat attataaaaa
     3901 gctttgaaac tacatttaaa atttatgaaa ttcttcaaaa acatggggct aagatttgct
     3961 ctatggggat gagtaatgat tttgaaattg ctataaaatg cggatccaac ttggtaagac
     4021 tcggaagcat tttatttaaa aatcttaagt aaaacaatct tacttaagca tatttattag
     4081 aaatttcctc tactatacta tcagagataa taaaatctgt atgataaagc aagcaagatc
     4141 ccgcactaat aacttttaaa acaagttttt tattattttt ttcattagga ttatgtgcat
     4201 ttctagcaat ttcatgaatt tcatagatta attctctatt caatcttgtc aaatctagct
     4261 ctatgatatt tttttcaaat tccttaggtt ctgcggtaaa atgattttct tctttatttt
     4321 taaaatcttt ttttgctcca aattttttta tagctttaat ctcgccatct tcaagacttt
     4381 gcaaatcttt aattgctttt aaaaaaaagc taggcttctc ccctccttca gctttaaatc
     4441 ccaatacaaa accataggca ttatttttta aattttcatc tttgatgatg ttttctattt
     4501 cttctacatt gctttcaaat acagtagcat caaacgaaga ataataatcc aaaatttcaa
     4561 ttctaccata acgcttatta tttttactca tcatggattt gaaatcttca attttaccta
     4621 tacttaaaat ttctccattg ttttttaaac tttcaaaatc taaactttta acataatcta
     4681 tggcattaat ttgttcataa aatcgatcta aaggatggcc tgaaacataa attcctaaaa
     4741 tttctttttc atatcctaat ttttccatca cttcaaattc ttcatttttg ggagtaaaat
     4801 ttacttgaac acctgaagtt aattcctctt caccaaaaag agaacttgca gcattttttc
     4861 ttacttcagc cattttacgc gatgcttcgc taagattttc catattatca aacaaagctt
     4921 ttctagtaaa accaaactca tcaaaagccc ctgccttaat aagactttct aatgttctac
     4981 ggtttatttt ggtgggatct atcttaccta agaaatcatt aatatcctta aattctccat
     5041 cttgtcttgc ttcaagtaaa ttttcaactg caggaatacc cacacttttt atagccccaa
     5101 gtccgtatat aatagcatcc ttgccatctt gctctaaagc actaaattca cggatcgctt
     5161 tgttaatcga tggaggtaaa agtttaatat tcattttttt catctcatca atataaacag
     5221 caattttatc cacattgttt tcttcgcttg ttaaaagcgc tgccataaat tcactaggat
     5281 aataagtttt taaataagct gtttgaaaag taatcaatgc ataagccgca gagtgagatt
     5341 tattaaaacc atatcctgca aattttacga taagctccca taaatcctca gcttttgctc
     5401 tatcatatcc ttgtttttct gctccatctg caaaatcagt tttaagcttt ttcatcttct
     5461 caggatcttt tttacccata gcacgacgca ctacatcagc acctcctaaa gaaaagccac
     5521 ctataatttg aacaatttgc ataacctgtt cttgataaac aataacccca taagtaggct
     5581 ctaaaacctt ttctaaactg tcaaaaggat attctatact ttttaaacca tgctttctgt
     5641 cgataaaatc atcaagcatt cctgattcca tagggcctgg acgataaagc gcaagaaccg
     5701 caatgatatc ttcaaaacgc tctggtttta agcgtgcatt taagctttgc ataccgcctg
     5761 attcgatttg aaaaattccc aaagtatttc cactttgtat ggttttataa actttgctat
     5821 catttacatc tatagtttcc caaataatgt ctttattgta acgcttttta ataagcttga
     5881 tcgcattatt gattactgtt aaggttttaa gacctaaaaa gtcaaatttt atcaaatcca
     5941 catcttctaa atgatcttta gaatactgcg ttaccaaatg tctttcatca tttttacttt
     6001 gtctaaaaag cggagttttc ttccataaac tttcattaga aattacaaca cctgctgcgt
     6061 gcatacccgc attgcgattt aatccttcta aagctcttgc atactcccaa acttcaagac
     6121 ctttaggatg acgatcgata aattctttga ttttaggttc tttttcataa gcagcatcaa
     6181 gagtgatttt aagctcttca ggcacaagtt tagcaagctc atcagcatct tgaatactca
     6241 tatcacaaac tctagccaca tcacgaatca cccctttagc caaaagttta ccaaaggtaa
     6301 tcacctgtgc aaccttatcc gctccatatt tatcaatcac ataatcaatc acttcagcac
     6361 gtctgtcttg acaaaaatcc acatcaatat caggcatgct cacacgctca ggatttaaaa
     6421 aacgctcaaa aagtagacta taaggaatag gatctaaatc cgtaatcctt aaacaataag
     6481 aaaccaaact tcctgcagct gatcctcttc cagggcctac tggaatacct ttatccttag
     6541 ccactttaat aaaatcatga acaataagca tataacctga aaatttcata tttttaatga
     6601 tgttaatttc tacttcaagt ctttgtttgt attcttcatg cttactttca tcgataaatt
     6661 ttaatctctc ttcaagtccc tttttgcaaa gttcttcaaa aaccatgtca tcattatcaa
     6721 agctaaattc ttttgtttct tcaggtaaga taatattatg atctttagca tattctcttg
     6781 taaatttaaa attcggtgga gtgggattgc caagattaag ctctaaatta catttttgtg
     6841 cgatttcttg tgtattttct atagcttctg gaatatctgc aaaaagctca ctcatctgct
     6901 caggactttt aacataaaat tcatgcacac tatgacgcat tctatcagga tcgttaagtt
     6961 tttttcccat ggctatacac ataaaaacct catgggcagc cgctctttct ttaaaagtat
     7021 aatgcgtatc atttgtagca atgattttta tatttaattc tttagaaagt ctgataatat
     7081 catcatctat cattctttga tcgcctatac catgacgcat gatttcaaaa taaaaatcat
     7141 ctttaaaaac ttttttatac cataatgccg cttcttttgc tgcttcatag ccttttgcac
     7201 caaaacgcac atttctttca ctataagtat ttaagtgcca atttacttca ccttgcaagc
     7261 aagcagaaga gcaaataaga ccttcgctat aatcttccaa aagcttttta ttgatacgcg
     7321 gataataata caaaccttta atataacttt gagaacttaa atacattaaa ttttgatatc
     7381 caatctcatt ttttgcatac aaacaaaggt gaaaacgctg acgagaactt ttatcatcta
     7441 actcatcatg attatgcaaa tacgcttcta taccaatgat aggttttaaa ccttgtgctt
     7501 tcattgtttg ataaaaatca attgccccaa acatatttcc atgatctgtc atagccacac
     7561 ttgtagcacc ctgctctttt aaagtcaaag ctaattcttt aagcttattg gctccatcaa
     7621 gcaaagaata ttctgtatgt aaatgcaagt gtgtaaattg actcattttc ttcctttagt
     7681 tttttaaggc ttattttaat tttgataaaa attataaatt tttctcgctg aatttgaaag
     7741 aaattgaccc taaatttcaa cttaaatttt acaaaaaggc aaaaattcag ccaaaataaa
     7801 ctataataaa atctaagatt ttaatcttaa taaaaagaac ttctcaaagg atgaaatgat
     7861 gaaagtaaaa attgcttatt gcaatctttg aaattatcgc ccacaagctg caagggttgc
     7921 agaagaacta caaagcgatt tcaaagatgt tgaagtagaa tttgaaattg gcggcagagg
     7981 tgattttatc gttgaagtag acggaaaagt tatcttctct aaaacacaac ttattaattg
     8041 cgaaagtgaa agatttccat atcaaaatga aattaatcaa ttaataaaaa atagagtgta
     8101 atcaaacact ctatcataac attttctcat attccttacc aatatatatg ttttgctcat
     8161 actcgataat aggacgctta atacaacttg gattttccaa tacaattttt tcaagttctt
     8221 tttcatttaa atttttaact ttttctttgt ttaagccaag ttttttagaa gttaatccag
     8281 cagtattgat aagttcttca aaagattttt gttttaacca tgtgtataaa atatcttgat
     8341 taatcttttt aatatccata aaatcaaaca caataccttt ttgtgttaaa gcatccatag
     8401 ctttctttac agaattgcaa tttttaatac cataaagttt cattttctag tcttttttac
     8461 caaatctgcg attaaaaaag caagttctaa tgcttgatcc gcattaagtc ttggatcgca
     8521 ttgagtctca taacgatctt ccaagctttg agcagtaaca ttgcttgcac cacctgtgca
     8581 ttctgttaca tctttcccag tcatttcaag atgcactcca cctggataaa ccccttcgct
     8641 tattgcaatc tcaaaaaaag atctcacttc ttgcataatt ttatcaaact cacgtgtttt
     8701 aaaattgcct gcttttaccg tatttccatg cataggatct atgctatata ctaaatttaa
     8761 accttcactt ttaagtttag agaaaatttt tggcaaatta ttgataattt tatctgcacc
     8821 catgcggata ataatattta atcttccttc ttcattgttt ggatttaaaa catttgctaa
     8881 agctatgata tcatcagcac ttgcactagg tcctatttta acccctaaag gattttttac
     8941 tccacttaaa aaatgcacat gagcttcatc aagcgccctt gttctttcac ctatccaaag
     9001 catgtgagct gaacaatcgt aaatttctcc acttaaacta tccactctag ttaaagcttc
     9061 ttcataaggc aaaagtaaag cttcatgtga agtataaaca ctaacttctc ttagacttgg
     9121 agtattactt gtattaattc cacaagcttc cataaaagct aaagcttgtg aaattttttc
     9181 actgatatca gtatattgct tatggagttc actctttttt aaaaagccca aattccaacg
     9241 atgtacttca tgtaaatctg ctaaaccacc cttagcaaat ccacgcaaca aatttagcgt
     9301 tattgcgctt tgataataag cttcaagcat tctatgtgga tcaggaatgc gtgcttgttc
     9361 actaaattca aaaccattaa taatatcacc acgataacta ggaagactta taccatctaa
     9421 ctcttcaaaa tcactacttc ttggcttggc aaactgccct gcaatacgac caatttttat
     9481 aacaggacat ccaccagcaa atgtaagtac tatagccatt tgaagtaaaa ttttaaacat
     9541 atcacggata tttacagcgc caaaattttc aaaactttca gcgcaatctc caccttgaag
     9601 taaaaaagct tcttttttac aaactcttgc taaagacttt tgaagatttc tcacttctcc
     9661 agcaaaaacc aaaggaggaa gtttctcaag tcttgctaaa actctattca tttcctcttg
     9721 atctggatag ataggttgct gttttatagg atagtttttc caagaattct tagcccacat
     9781 ggttttttct ttcgttttat ttatcagctt cctctataag ttgaataacc aaaaggagaa
     9841 agggttattg gaacatgata atgtttctga tctttagaaa gctcaaaact tacctctaca
     9901 aaaggataaa aagtatttat tttgtgtgat gtgtaatagt cttttgtaaa aaatttaagc
     9961 ttataaattc caaaagccct attttcagct ttttcatatg gtaataaatc tcctattcta
    10021 ccattttctt cggtaaattc ttcacttact tttttccact gttgatttgc ttccaactta
    10081 taaagctcaa cttttacttt aggagcaggt tgtccagaag taatatccaa gacatgagta
    10141 cttaattgat attcagtagc actcaaaaac attggcacgc ttgctagtat taataaagtt
    10201 tttttaatag aaaacatttt ctctccttgt ataatattta caaggaatat tatacaagag
    10261 tattattaat aattaaaatc aaataaataa taattataaa ttaattataa ttatttaatt
    10321 gttagactta taataaaaat aattataaat tattttttaa gctctttaat acgcgctgct
    10381 ttaccgcgtc tatctcttaa gtagaataat cttgcacggc gtacacgacc acgacgcaaa
    10441 acagtaatac tttctaaact ttcactataa ataggaaaaa ttctctcaac gccaacatta
    10501 ttagcgccaa ttttacgcac gataaaagtt tcacttacgc cattacctct tctagcaata
    10561 caaataccct caaaattttg gattcttgtt ttatctcctt ctttgatgcg aattgcaagc
    10621 tttaaagtat caccagcacg aaaatctgga acatttttac cttcaatttg ttttgcttca
    10681 aattgttcta tatatttatt tttcataaaa aatcccttat tttttgcgtt catgctctaa
    10741 aaataaatct ggacgaaaaa atttcgtttt gcaagacgcc aaagtagttt ttaaacttgc
    10801 aattctagcg tgattaccct ttaaaaactc tgaaggagta taaaattttt tatttttttt
    10861 ctcaaaaata aaaggttttg aaaaagcagg cgcttcgagt aaattatttt caaagctttc
    10921 ttcttccaaa ctttccatat ttcctaaaac cccgttaaca tttcttaaaa ttgcatcaca
    10981 cattacaagc gcaggtaatt ctcctccagt taaaataaaa tcccctatac taaaaacttc
    11041 attcgcaaaa atttcaagca ctctttcatc tataccttca tagcgcccac atacaaaaac
    11101 tatatgttct tttttactta agcgtttggc gtctttttga ttaaaggttt taccacttgg
    11161 atttaaaaaa ataaaatagg gattttcttt tttttcttga atacttctta gcacctcata
    11221 cataggttca gcttgcatca aaagtccagc tccaccacct attttataat catcgacttt
    11281 atgataagaa tttttagaaa aatctcttgg attataaaaa ttaagtttga aaagtttttt
    11341 ttcttttgct cttgcaagta tagaatcttg aaagtaaaat tccataagat tagggaacaa
    11401 agaaacgaaa ctaaatttca tgaattttct aaaattaaaa aagcatcttg cgtgca
//
LOCUS       DARBAR010000050        11168 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.050, whole genome shotgun sequence.
ACCESSION   DARBAR010000050 DARBAR010000000
VERSION     DARBAR010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11168
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.050"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            120..431
                     /gene="rpsJ"
                     /locus_tag="SB815_000989"
     CDS             120..431
                     /gene="rpsJ"
                     /locus_tag="SB815_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEG0906726.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            441..1016
                     /locus_tag="SB815_000990"
     CDS             441..1016
                     /locus_tag="SB815_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEG0906727.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            1013..1627
                     /gene="rplD"
                     /locus_tag="SB815_000991"
     CDS             1013..1627
                     /gene="rplD"
                     /locus_tag="SB815_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEG0906728.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSVLESITKEG"
     gene            1630..1911
                     /locus_tag="SB815_000992"
     CDS             1630..1911
                     /locus_tag="SB815_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEG0906729.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKIKRFRGRLGQRNNYKKFYVKLPEGVSLENTEA"
     gene            1913..2743
                     /gene="rplB"
                     /locus_tag="SB815_000993"
     CDS             1913..2743
                     /gene="rplB"
                     /locus_tag="SB815_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEG0906730.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVAAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            2745..3026
                     /gene="rpsS"
                     /locus_tag="SB815_000994"
     CDS             2745..3026
                     /gene="rpsS"
                     /locus_tag="SB815_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEG0906731.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            3037..3462
                     /gene="rplV"
                     /locus_tag="SB815_000995"
     CDS             3037..3462
                     /gene="rplV"
                     /locus_tag="SB815_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEG0906732.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKSEEKKTVAKKTTTTKAPAKKTTSTKKATVKKES"
     gene            3462..4163
                     /gene="rpsC"
                     /locus_tag="SB815_000996"
     CDS             3462..4163
                     /gene="rpsC"
                     /locus_tag="SB815_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEG0906733.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            4166..4591
                     /gene="rplP"
                     /locus_tag="SB815_000997"
     CDS             4166..4591
                     /gene="rplP"
                     /locus_tag="SB815_000997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEG0906734.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            4578..4763
                     /gene="rpmC"
                     /locus_tag="SB815_000998"
     CDS             4578..4763
                     /gene="rpmC"
                     /locus_tag="SB815_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEG0906735.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            4773..5024
                     /gene="rpsQ"
                     /locus_tag="SB815_000999"
     CDS             4773..5024
                     /gene="rpsQ"
                     /locus_tag="SB815_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEG0906736.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            5024..5392
                     /gene="rplN"
                     /locus_tag="SB815_001000"
     CDS             5024..5392
                     /gene="rplN"
                     /locus_tag="SB815_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEG0906737.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            5392..5625
                     /locus_tag="SB815_001001"
     CDS             5392..5625
                     /locus_tag="SB815_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEG0906738.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            5629..6174
                     /gene="rplE"
                     /locus_tag="SB815_001002"
     CDS             5629..6174
                     /gene="rplE"
                     /locus_tag="SB815_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEG0906739.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            6176..6361
                     /locus_tag="SB815_001003"
     CDS             6176..6361
                     /locus_tag="SB815_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEG0906740.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            6371..6766
                     /gene="rpsH"
                     /locus_tag="SB815_001004"
     CDS             6371..6766
                     /gene="rpsH"
                     /locus_tag="SB815_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEG0906741.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGI
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            6845..7381
                     /gene="rplF"
                     /locus_tag="SB815_001005"
     CDS             6845..7381
                     /gene="rplF"
                     /locus_tag="SB815_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEG0906742.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            7391..7747
                     /locus_tag="SB815_001006"
     CDS             7391..7747
                     /locus_tag="SB815_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEG0906743.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKVKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            7759..8202
                     /gene="rpsE"
                     /locus_tag="SB815_001007"
     CDS             7759..8202
                     /gene="rpsE"
                     /locus_tag="SB815_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEG0906744.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            8207..8599
                     /locus_tag="SB815_001008"
     CDS             8207..8599
                     /locus_tag="SB815_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEG0906745.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISVTGSK"
     gene            8599..9864
                     /gene="secY"
                     /locus_tag="SB815_001009"
     CDS             8599..9864
                     /gene="secY"
                     /locus_tag="SB815_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEG0906746.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(9892..11164)
                     /locus_tag="SB815_001010"
                     /pseudo
     CDS             complement(9892..11164)
                     /locus_tag="SB815_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
BASE COUNT         4176 a         1560 c         2265 g         3167 t
ORIGIN      
        1 aataatagaa aaatttcatc aaattccttg actttgaaaa caagatttta tatactctca
       61 tttcaatttt tataaattgg ttagttttta actaacgagt tctttttaaa ggaaatatta
      121 tggaaagaat taggcttaag ctaaaagctt atgaccatcg agtactagac agaacagttg
      181 cagcaatcgt agaagctgtt aaaagaacag gtgcggatat cagaggtccg ataccaatgc
      241 ctactaaaat caaacgctat acagttttaa aatctccaca cattaacaaa gattctcgtg
      301 agcagtttga aataagaatt cacgcgcgta tgctagatat agtagcagcg actccagata
      361 cagttgattc tttaactaag cttgatttag cgccagaagt aagcgttgaa gtaagagcta
      421 tgggtaagta aggataagat atggaatata ttgtagaaaa aatcggaatg agcagaacaa
      481 ttactaatcc aagtatcgct gtaactttac taagagttgt aaatgcaaaa gtatgtgaag
      541 ttgaaggcgg aaaggcttta gtagcatatc caaaaggtaa agcaagtaat aaatgtgtcg
      601 caggacaaca aaaaaagtat aatctttctg cagaatacaa tagatttgcg actttagaag
      661 tagcaaacac tgaagcagga gatttagatg aaactccatt aaatgaagca aaaattttaa
      721 aagtaagctt taacactaaa ggtagaggtt atagcggtgt tatgaaaaga cataacttcg
      781 cagggggtcc agcaagtcac ggttctagat ttcacagacg ccacggatct attggtaata
      841 gagaatggcc aggtcgtgtt caaccaggta tgaaaatggc aggacattat ggaaatacta
      901 aagtaaccgt taaaaacgaa gttgtatctt atgatgctga aaacaaaatt ttagtagtta
      961 aaggtgcagt accaggttat aatggtgcta tgggtaaaat aaggattgca aaatgagtaa
     1021 agtagttgtt ttaaatgata aattagaaaa agcaggtgaa cttgatttac cttcaaaata
     1081 tgcggaagta aatccacaca atctttactt gtatgtaaaa tcttaccttg caagtttaag
     1141 agcaaataca gctcatacta aaggtagaag tgatgtaagt ggtggtggta aaaaaccttg
     1201 gagacaaaaa ggtcgtggcg gtgctagagc gggttcaaca agaactaacg tttgggtagg
     1261 cggtgcggtt gcttttggtc caacaaatga aagaaactac ttccaaaaag taaataaaaa
     1321 acaaaaaaga ttggcgcttg aaagagcttt agcagataaa gcagctaaag gtgtgttatt
     1381 tactgctgat tctttggcta ttgaaagtgg taaaacaaaa gatgcaaacg ctgtgattaa
     1441 aaaacttggc gtcaaagatg ctttaatcgt taaagattta ctagatgaaa aaacactttt
     1501 agcttacaga aatttagcaa attgctatgt agttgatgta actgaagtaa atgcttattt
     1561 agtatctgta tttaatgctg ttattatgga aaaatcagtg ttagaatcta ttacaaaaga
     1621 gggataatta tggcagatat tactgatata aagactatac tttacacaga aaaaagtttg
     1681 aatttgcaag agcaaggtgt cgtagttatt caaacttcgc caaaaatgac taaaacaggc
     1741 ttaaaagcgg ttttaaaaga gtattttggt gtaactccaa aaagcatcaa ttccttaaga
     1801 atggatggaa aaattaagcg ttttagaggt cgtttaggtc aaagaaacaa ttacaaaaaa
     1861 ttctatgtta agctacctga aggtgttagc ttagaaaata cggaggctta agatggcaat
     1921 taaaacttat aaaccatata ctccaagtag aagatatatc acaggtttaa gttctgaaga
     1981 tattacagct aaaccaagtg tacgctcact acttgttaaa cttccagcac acgcgggtcg
     2041 taacagctat ggaagaatta caagtcgtca taaagaagcg ggtgctaaaa aactttacag
     2101 aattattgat tttaaacgtc gtaaattcgg tatagaaggc aaagtagaag caatcgagta
     2161 tgatccatac agaaattgta gaattgcttt gattgcttat aaagatgggg aaaaaagata
     2221 tattcttcaa ccacgtggat taagcgttgg tgatatcgtt gcagctgctg aaagcggact
     2281 tgatattaaa ccaggtaatg caatgaaact taaaaacatt cctgtgggta ctattgttca
     2341 taatgttgag ttaaaaccag gtaaaggcgg tcaaatgatt cgttctgcgg gtgcttatgc
     2401 acaacttatg ggtaaagaag aaaaatatgt tattttaaga cttgcaagtg gcgaaatgag
     2461 acaagtttta gctgaatgta tggcaagtat cggcgaagtt ggaaatgaag aatgggctaa
     2521 tgtaactatc ggtaaagcag gtagaaatcg ccatagaggt atccgcccgc aaactcgtgg
     2581 ttctgcaatg aacccagtag atcacccgca cggtgggggt gaaggtaaga aaaattcagg
     2641 ccgtcatcca gtaactccgt ggggtaaacc aaccaaaggt gcgaaaactc gtcgtaaaaa
     2701 ggctagcgat aagctaataa tttcaagaag aaaaggaaag taagatggct agatcactaa
     2761 aaaaaggtcc ttttgttgat gatcatgtaa tgaaaaaagt catcgctgct aaaaaggcta
     2821 atgataataa accaattaaa acttggtcaa gaagaagcac aattactcct gatatgatag
     2881 gacttacatt taatgttcat aatggcaaaa gcttcattcc ggtttatatt actgaaaatc
     2941 acatcggtta taaacttggt gaatttgctc caacacgcac atttaaaggg cataaaggct
     3001 ctgtgcaaaa gaaaattggt aagtaaggga taagatatga gtaaagcatt aattaaattc
     3061 ataagattat ctccaactaa agcaagattg attgctagag aagttcaggg gatgaatgca
     3121 gaattagcta tggctagttt aaaatttatg ccaaataaag gtgcaaaata cattgcaaac
     3181 gcaatttcaa gcgcagtagc aaatggtggc tttgaagcaa acgaagtgat tgtaaaaagt
     3241 tgtcgtgttg acgcagctgc ggtattaaaa agatttagac caagagctag aggaagtgca
     3301 agtcgtatta gaaaaccaac ttcacatatt ttagtagaag tggcaaaagc ggaagtgaaa
     3361 tctgaagaga aaaaaacagt agctaaaaaa actactacaa caaaagctcc agctaaaaaa
     3421 acaacaagca ctaaaaaagc aacagtgaaa aaggaaagct aatgggacaa aaagttaatc
     3481 caattggtct aagactagga atcaatagaa actgggaatc aagatggttt ccaactaaag
     3541 caaatttagt agaaaatatc ggtgaagatt acaaaatcag agctttctta aaaagaaaac
     3601 tttattacgc aggaattagc caaattttag tagaaagaac tgctaaaaaa cttcgcgtta
     3661 ctgtagttgc tgcaagacca ggtatcatca tcggtaaaaa aggtagtgat gttgataatt
     3721 taagaaaaga attgcaagat ttaatcggta aagatgtaaa tatcaatatc aaagaagaaa
     3781 gaaaagcagg agcttcagct caacttgctg ctgaaagtgt tgcaactcaa cttgaaaaaa
     3841 gaattgcttt tagaagagca atgaaaaaag taatccaagg tgcgcaaaaa gcaggtgcta
     3901 aaggaattaa agtttcagtt tccggtcgtt taggcggtgc tgaaatggca agaacagaat
     3961 ggtatcttga aggacgcgtt ccacttcata ctttaagagc aaaaatcgat tatggttttg
     4021 cagaagctag aactacttat ggaaacatag gagttaaagt atggatcttt aaaggtgaag
     4081 tattgcacaa aggtatgcaa cctgaaaaaa ctgaagaaag tgctccagct aaaaagccaa
     4141 gacgcacaag aaggggtaaa taatcatgtt aatgccaaaa agaactaaat atcgcaaaat
     4201 gatgaaaggg cgtaacagag gttatgctaa tcgtggaaca gaatttactt ttggtgaatt
     4261 tgcattaaaa gcaactgaag caggacgcat taactcacgc caaatcgaag cagcgcgtat
     4321 cgctttaact cgttttgtta aaagacaagg aaaaacttgg attagagttt ttccagataa
     4381 gcctttgaca aaaaaacctt tagaaactcg tatgggtaaa ggtaaaggtg ctgttgagga
     4441 atgggtaatg aatatcaagc caggtcgtat catttatgaa atggcaggag taagcgaaga
     4501 aatggcaaga gaagcattga ctttagctat gcataaactt ccatttaaaa ctaagtttgt
     4561 tacaagagag agccaaaatg aaatatactg agattaaaga taaaacagca gctgagcttg
     4621 caacaatgct aaaagaaaaa aaggtgcttt tattcacttt aaaacaaaag ctaaaaacaa
     4681 tgcaacttac taatccaaaa gagattagcc aagtaaaaaa agacattgct agaataaata
     4741 cagcaattaa cgctttaaga taaggataga aaatggcatt taaaagagaa attcaaggcg
     4801 ttgttgttaa aatcgctggt gaaaaaaccg caagtgtttt ggttgaaaga aaagtggttc
     4861 atccaagata tagaaaaatt gttaaacgct ttaaaaaata tctaattcat gatgagagaa
     4921 atgaagttaa agtgggtgat actgttgttg cagtagaatg cagaccactt tcaaaaagaa
     4981 aatcatttcg cttaaaatct gtattagcta caggagttga gtaatgattc aaagttttac
     5041 aagacttgca gttgctgata atagcggtgc aaaagaatta atgtgtatca aggttttagg
     5101 gggtagcaaa agaagatacg ctaccgtagg tgatgtaatc gttgcatctg ttaaaaaagc
     5161 tttaccaaat ggaaaagtta aaaaaggtca agtggtaaaa gcggttatcg ttagaactaa
     5221 aaaagaaatt catagagata atggttcttt gattcgtttt gatgaaaatg ctgcggttat
     5281 tcttgacaac aaaagagagc ctatcggaac tcgtatcttt gggccagtgg gcagagaagt
     5341 tagatatggt ggctttatga aaatcgtttc actagcaccg gaggtattat aatggcggtt
     5401 aaattaaaaa tcaaaaaagg tgatagcgtt aaggttatca caggcgatga taaaggtaaa
     5461 acaggtaaag ttttagcggt atatccaaaa acacttaaag tggtagttga aggatgtaaa
     5521 atcgctaaaa aagctattaa gccgagtgag aaaaacccaa atggtggttt tatcaataaa
     5581 gaaatgccaa tggatatttc caatgtggca aaagttcagg agtaagcgat gatgagatta
     5641 aaagaaaaat ataatcaaag cattaaacct gcattggtta aagaatttga tattaaaaat
     5701 cctatgctta tccctgtgat cgaaaaagta gttatcagcg taggtgctgg tgagttggct
     5761 aaagatcaaa aagtattgca aaatgttgca gatactattt ctttaattgc aggacaaaag
     5821 gctgtgatta ctaaagctaa aaaatcagtt gcaggattta aagttcgcga aggttttcct
     5881 gtaggtgtaa tggtaacttt aagaaaagaa aatatgtatg cttttcttga taaattaatt
     5941 tctattgctt tgccaagggt gaaagacttt agaggtttaa gtagagatgg ttttgatgga
     6001 cgcggaaact ataacttcgg tcttgatgag cagttgatgt tcccagaagt ggagtatgat
     6061 aaaattttaa gaactcatgg tatgaacatt tctatagtta caacagcaca aaatgacaaa
     6121 caggcacaaa agttattaga acttatcggt gtgccattta caaaaggaaa gtaagatggc
     6181 taaaaaatca atgattgcaa aagcggcacg caagcctaaa tttaaggtta gagcttatac
     6241 aagatgccaa atttgtgggc gtccgcattc ggtttataga gattttggaa tttgcagagt
     6301 ttgcttaaga aaaatgggca atgaaggttt gattccaggt cttaagaaag caagttggta
     6361 aggataaaat atgataaatg atattatttc agattcactc actcgtatca gaaatgcagg
     6421 aatgagaaag cttgaaacaa ccaagctttt acattctaaa gttgtagaag ctttagttgg
     6481 aatttttcaa gctaaaggct atattgagag ttttaatgtt attgaagaag ataaaaagaa
     6541 atttatcaat gtagttttaa aatacgatga aaaaggtaag agtgttatca atgagcttaa
     6601 aagaatttct aagcctggtc gtcgtgttta taaaggtaaa gatgaaatca agcgttttaa
     6661 aaatggttat ggtattatcg tagttagcac aagtcatggt gttttagcta atgatgaagc
     6721 ttataaagca ggtgttggcg gcgaaatttt atgtaccatt tggtaaaaaa tctgcttttt
     6781 atggcattgg gtatccattc ttttaaaaaa gtagaaatat cctagacaaa taaaaaggaa
     6841 aaatatgtct cgtataggta aacaaccgat tgctattcca gcaggagtag aagtaaaatt
     6901 agaaggaaat ttgcttaaat ttaaaaaagg aaatttggca aaagaacttg atactaaagc
     6961 aaatgtaaat gttgagatta aagataataa tattcttttt tctccaaaag gtgaagacag
     7021 acaaagtaga gcttattggg gaacttacag agctttagct tacaatatcg ttgtaggttt
     7081 aactcaaggt ttttcaaaaa ctcttgaaat caatggagtt ggttataagg cagctttaaa
     7141 aggtaaagtt ttagaactaa gccttggttt ttctcatcct attaattatg atattccaga
     7201 aggaattgaa attgtagtgg ataaaaatac tattgcagtt aaaggaagtg ataaacaagt
     7261 tgtaggtcaa gttgctgctc aaattcgtga atttagaccg ccagagccat ataaaggaaa
     7321 aggcgttaag tattctgatg aacgcattat ccgcaaagct ggtaagacat ctaagaagta
     7381 agggtagaat atgagagcaa atgtattaaa aagaaaacta actttaagaa tcaaaagaaa
     7441 aaaaagaatt agagcgaaaa tttcaggttg tgaaaatttt ccaagaattt ctgtatttaa
     7501 atcaaacaga actctatata tccaagcgat tgatgatgta aaagctgtaa ctttagcagc
     7561 agttgatgga cgcaaacttg gcgttaaagc aaataaagaa ggtgctaaaa aaatcgctgc
     7621 tgaatttgct aaaactttaa aagttaaaaa gatagaacaa gctgtttttg atagaaatgg
     7681 ttatgtatat catggtgtta tcgcagcatt ggctgaatct ttaagagaaa atggcattag
     7741 gctataaggg gtaaatcgat ggaaaaatat aatagagaag aatttgaaga agtaatcgtc
     7801 gatatcggca gagttactaa ggttgttaaa ggtggtagaa gatttagatt tactgcttta
     7861 gttatcgttg gaaaccgcaa aggtttagta ggtgttggtt atggtaaggc taaggaagtt
     7921 ccagatgcca tccgtaaagc tgttgacgat gcgtttaaaa atatcgttga agttaaaact
     7981 aaaggctcaa ctatcgctca cgatgtagag gtgaaataca acgcaagtag aattttactt
     8041 aaaccagcta gcgaaggtac aggagttatc gcaggtggtt ctacacgccc tatcgtggaa
     8101 cttgcaggta ttaaagacat cttaaccaag tctttgggtt caaataattc agctaatgtg
     8161 gttcgtgcta caatcaaagc tttaacaatg ttaaaaggat aagaagatga atttaacaaa
     8221 agcagcgggt tcaacgcata aaactaaaag aattggccgt ggtcaaggtt ctggcatggg
     8281 taagactgct actaaagggg gtaaaggtca aactgctaga aaaggttata atgaaaaaag
     8341 aggttttgaa gggggtcaac aaccacttca aagaagacta ccaaaagtag gttttacttc
     8401 taaaattcaa aaaccttatg tgatcaatgt tgaaaaaatc acagctgtaa aagagcttag
     8461 tgaaattaca tttgagagca ttaaaagtgt tcacaaaatt tcaaaatctg tgaataaaat
     8521 caaattaatt ggtgcaagtg caaaagactt agtatcaaaa atcaaagacg agaatattag
     8581 tgtcaccgga tcaaaataat gaatagagca ttgacgaata agattttaat caccttagca
     8641 tttttatttg cttatagggt tctggcttat gtgccagttc ctggcgtcaa tgctgatgtg
     8701 attgcggaat tttttaataa caatcaaaac aatgctttgg gtttatttaa tgtttttagt
     8761 ggtggagcgg ctgaacgctt ttctatcatt tctttaggta ttatgcctta tattactgct
     8821 tctattatta tggagcttct tgcagcaact tttccaaata ttggtaagat gaaaaaagag
     8881 cgtgatagta tgcaaaaata tatgcaaatt atccgttatg cgactattgt gattactttg
     8941 gttcaaagta taggcgttgc tataggtttg caaagcttgc acggtcgtgg tggtgcaggg
     9001 gctataatgg tggaagattt aaatatgttt atcgcacttt gtgctatttc tatgcttgct
     9061 ggaactatgc ttttaatgtg gcttggcgaa caaatcacac aaagaggtat aggaaatggt
     9121 atttctttaa tcatttttgc aggtattgtt tcaggtattc caagagcgat ttcaggaact
     9181 gtaggacaaa tcaattcagg cgagatgaat ttcttaaccg cttttgcaat ttttgctttg
     9241 attttaatca ccataggggt gattatttat atagaacttg gagaaagaag aattcctatt
     9301 tcttattctc gtaaagttgt aatgcaaaat caaaacaaac gcattatgaa ttatattcct
     9361 attaaactca atcttagtgg ggttattcca ccgatttttg ctagtgcgat tttgatgttt
     9421 ccaacaacaa ttttacaaac tagtacaaat ccttatctac aagccattaa tgacttttta
     9481 aatccaaatg gttatttgtt tcatgttcta actttcttgt ttgtaatttt ctttgcttat
     9541 ttttatgctt ctatcgtatt taacgctaaa gacatagcag aaaatttgaa aaaacaaggc
     9601 ggttttatcc ctggaattcg tccaggtgaa ggaacttcaa gttatcttaa cgaagtggct
     9661 tctcgtttaa ctttatcagg ttctatttat ttagggcttg ttgcaacctt accttgggtt
     9721 ttggtgaaat ttatgggtgt gccttttcat tttggcggca cttctgtact tattgtagtt
     9781 caagtagcac ttgatacgat gagaaaaatt gaagctcaaa tttatatgag taaataccaa
     9841 actttaagtg cggtaggttt gtaataaata aaattagcaa gatttttctt gctaatttat
     9901 tctaggtttt tgctttaaaa ataaaaacac aatgcacact ataaaaatta ctattgacca
     9961 tattaaaaaa gcatctacaa gacccatttg tctaacgata ggttgagaga taataggact
    10021 taaaaattgt cctaaaaata tacaacttgc taaaattcca taagccctag agcgagcatt
    10081 ttcaggacag attgaaaaaa gataagccgt atttatttac aagcataata cctccaccca
    10141 ttccaagcaa agctaaggcg attaaaactg tgaaaaagct atctactaaa aaaagcagca
    10201 aaaaagaaca agatacgata aaaagagtta aaacataaat agttttaata cttaagaatt
    10261 ttataatata tctatagctt agagagaaaa aaccataaca tagtgcagat acagacatcg
    10321 aaatacctat atatttagga tccaatccca aatgttcttc tatatagtaa ggaagttgag
    10381 ttggcgaaat ataataaact accatgataa aaaaacctat aaaatagata gggaaaaatt
    10441 gccaataatt tgtttttgtt tctatttttg tatgattata gaatttaaat tttctaggtt
    10501 caaaaagata aatgatagcc attaaggtaa ttaaaattcc aagtccatat accaaaaaag
    10561 gataacgcca agaataactt gaaacaaatc ccgcaataga aataaaaaca gcacccccta
    10621 ctgcacaaaa aaatccttga agacttaaag cattttctct gcgattaaag ccaccacgac
    10681 tataataatc cccaagcaaa gccgaagcgc ctgtcattat aaaagcagtt gccataccaa
    10741 aaatagctct tgaagtcagt atagcataaa tatcatttaa gaaaaagcca cttatcccag
    10801 aaagagtcca aaccaccata gctggaagaa tgaattttaa tttgccaaat ttatccatta
    10861 aaataccagc aaatggagat aaaatgacaa caaaaatagc agggatggtt aaaactaagc
    10921 gaacaagtat atcaagatga gctaatgtga aacttgaagc aagagtagcg ccactttggg
    10981 ttaaaagttc ttcaaaatgt ctgttgatag caggcagagc agatgaaatg accacacttc
    11041 ctagcatagt catagcagcc atagaaaaca cagctgcttt aaatccggac ttttcagtaa
    11101 tttgaattat ttttttatcc atttttgtgt catttggatg aaatttataa gttttgtcat
    11161 tcataatt
//
LOCUS       DARBAR010000051        10998 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.051, whole genome shotgun sequence.
ACCESSION   DARBAR010000051 DARBAR010000000
VERSION     DARBAR010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10998
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.051"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..1112
                     /locus_tag="SB815_001011"
     CDS             <1..1112
                     /locus_tag="SB815_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG0906747.1"
                     /translation="HIKASKEDENLDSGIKTHEEDTQDTKNDIQNNETENKPDNDIKN
                     STPNQEKIKDEKQEKSKENIKENPKFYETKTENKTSINTNTNTSNPNTNNTQNLNNTQ
                     NIQSNNNQTMQNIFKNQEFIKQNIVKNLAFNVENLDLEQVQDLSKNLSNLSRRLNESL
                     KELEPYTQNAKLNQAELKNLEHKLNLSIKDLAQIKPKTEQDIAESLHHDVKSTLLQIS
                     NLAKNEGNEAVYNQANRLLAQIEINQLMSLANDSINTYLPFSWDDLNDSKIMFRRGKK
                     DKFFAQIKLEFAKLGDLEILISLNNEKYIDINIMAENIEFRKTIYENAHELKRNINKA
                     GLLSANFFVGDIIRSKFDTRNMKNLDLEMGMDKKV"
     gene            1109..1390
                     /locus_tag="SB815_001012"
     CDS             1109..1390
                     /locus_tag="SB815_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HEG0906748.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(1387..2187)
                     /locus_tag="SB815_001013"
     CDS             complement(1387..2187)
                     /locus_tag="SB815_001013"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG0906749.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNINMSEFKA
                     PCEYESLNALFTRTLQIPRKFEEGFISPSDGKILECGSTFLANEEHFAFSIKGHAYSV
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGLLTFNLKVGQGIKFGEKIAD"
     gene            complement(2184..3308)
                     /locus_tag="SB815_001014"
     CDS             complement(2184..3308)
                     /locus_tag="SB815_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEG0906750.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFSFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMFYAPTYCLFFMTLAWDFVKLILALMGKRDK
                     TYNLILRLIFELSLIVLSVFLIYASINNALKTPEVKSVDVEIPNLKKDLKIVMLTDIH
                     LGKNLHENFLDKLITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYA
                     LGNHEYYHGINEVLDLLRKHTNMKILVNQNLDLGFIDIAGLGDLAGLDRGLYAPDLAR
                     IKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHG
                     LYDLGEKTKLYVSSGAGFWGPSLRVFAPSEIVILNLKGKK"
     gene            3394..4689
                     /locus_tag="SB815_001015"
     CDS             3394..4689
                     /locus_tag="SB815_001015"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG0906751.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLIMLGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAQLAKFYT
                     QETSTIKELKEKMQAIFNAKDFGEFETEYKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            4692..4973
                     /locus_tag="SB815_001016"
     CDS             4692..4973
                     /locus_tag="SB815_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEG0906752.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            4970..6595
                     /locus_tag="SB815_001017"
     CDS             4970..6595
                     /locus_tag="SB815_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEG0906753.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTGLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENVSE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLNKS"
     gene            complement(6492..6977)
                     /locus_tag="SB815_001018"
     CDS             complement(6492..6977)
                     /locus_tag="SB815_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0906754.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKASLPSVKEETRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            7073..7564
                     /gene="mobB"
                     /locus_tag="SB815_001019"
     CDS             7073..7564
                     /gene="mobB"
                     /locus_tag="SB815_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HEG0906755.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            7566..8408
                     /locus_tag="SB815_001020"
     CDS             7566..8408
                     /locus_tag="SB815_001020"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HEG0906756.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLRMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            8401..8598
                     /locus_tag="SB815_001021"
     CDS             8401..8598
                     /locus_tag="SB815_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906757.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            8608..10494
                     /gene="metG"
                     /locus_tag="SB815_001022"
     CDS             8608..10494
                     /gene="metG"
                     /locus_tag="SB815_001022"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEG0906758.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFIK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDAYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFYNAELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWSLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSSQKVALALNFEISSANYTKMILDNELLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLELDDKEIRQVL
                     SGIAKYYKASDLIGKQVCVISNLKKAKIFGHESDGMILSAKSGDKLVLIAPEQLVQNG
                     SLVG"
     gene            10498..>10998
                     /locus_tag="SB815_001023"
     CDS             10498..>10998
                     /locus_tag="SB815_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906759.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKTGFAFFNNDK
                     KEIAQAVKKGAYAIITENDITIEDKEIFYFRVENLERALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCTYSHSLKDANF
                     TLLSRSS"
BASE COUNT         4238 a         1655 c         1562 g         3543 t
ORIGIN      
        1 aacatataaa agcatcaaaa gaagatgaaa atttagattc tggtataaaa acccatgaag
       61 aagataccca agatacaaaa aatgatattc aaaataatga aacagaaaat aagccagaca
      121 atgatataaa aaattctact ccaaaccaag aaaaaattaa agatgaaaaa caagaaaaat
      181 caaaagaaaa tatcaaagaa aatccaaaat tttatgaaac aaaaacagaa aacaaaactt
      241 caatcaatac aaataccaac acttcaaatc ctaatacaaa caatacgcaa aatttaaata
      301 atactcaaaa tattcaatct aacaataacc aaactatgca aaatattttt aaaaatcagg
      361 aatttataaa acaaaatatt gtaaaaaatt tagcatttaa tgtagaaaat ttagatctag
      421 aacaagtgca agatttaagt aaaaatttaa gcaatctttc tcgtagactt aatgaaagct
      481 taaaagaact tgaaccctat actcaaaatg ccaagcttaa tcaagcagaa cttaaaaatc
      541 tcgaacacaa actcaatctt tctatcaaag atctagcgca aattaaacca aaaacagaac
      601 aagatatagc tgaatcttta catcatgatg taaaatcaac acttttgcaa atttcaaatt
      661 tagctaaaaa tgaaggcaat gaagctgtat acaatcaagc taatcgtctt ttagcgcaaa
      721 ttgaaatcaa tcagcttatg tctttagcta atgattctat caatacttat ctgccttttt
      781 cttgggatga tttaaatgat tctaaaatta tgtttagacg cggaaaaaag gacaaatttt
      841 ttgctcagat taaactcgaa tttgcaaaac ttggggattt ggaaattctt atttctttaa
      901 ataatgaaaa atatatagat attaatatta tggcagaaaa tattgaattt agaaaaacca
      961 tctatgaaaa tgcccatgag cttaaaagaa atatcaataa agcaggactt ttaagtgcaa
     1021 atttctttgt aggtgatatc ataagaagta aatttgatac tagaaatatg aaaaatttag
     1081 atcttgaaat gggtatggat aaaaaagtat gagcaaaatc aaaagatcga ttaaaaaagc
     1141 tgtagctcta ggctatcaaa aagaaaaaaa ctctgcacca aaagtgcttg caagtggcaa
     1201 aggcgaaagt gctgctaaaa ttatttcttt agccaaggaa cacggagttc ctattaaaga
     1261 agatgaagat ttaatagaaa ttttaagcaa gcttgactta ggtgatgaaa ttccacctaa
     1321 tatgtataaa gctgtagctg aagtttttgc ctttatctat caaatggcaa ataaaactcc
     1381 taaaaactaa tccgctattt tttctccaaa tttaataccc tgccctactt ttaaattaaa
     1441 agttaaaagt cctttttgag agattaaaac tatagtagaa cctagctcaa aatttcctag
     1501 ttcttcgcct tttttgaaat ttaaattttc atattttcta gtaaaattat gagaaatttt
     1561 agcattggtt tgtatgcttg catcaaaatt aaaacgcatt tttcctacat tttgcgctcc
     1621 tacaaaaaca agccaaaaaa tacctttttc attttgacat tttaaactca ctctttcatt
     1681 ttttacatat aaattactaa tgcgttctaa atgtttttca tttacgctat aaagcactcc
     1741 acttgtgtaa gttgcactta aaatttgcat atcacaaggg ctgtgataac gatgataatc
     1801 ttttggagaa agataaatat tgacataatc aagcccattt ttaagttcat ctttttcaaa
     1861 gctatctttt aaaagctcct caacgctata agcatgtcct tttatagaaa aagcaaaatg
     1921 ttcttcattt gctaaaaaag tacttccaca ctctaaaatt ttaccatcac ttggactgat
     1981 aaaaccttct tcaaattttc ttggaatttg caaagttctt gtaaaaagag catttaaact
     2041 ctcatattca caaggagctt taaattcact catattgata ttaaaatact taacataatt
     2101 ttcattaata actttttgta tcattttagg aaatttaatc cccgctacaa aaccaaaaag
     2161 tctcgaactt tcttttgaaa aactcatttt tttcctttta aatttaaaat cactatttca
     2221 ctcggagcaa aaactctaag acttggcccc caaaatcctg ctccactact cacataaagc
     2281 ttagtttttt ctcctaaatc ataaagccca tgaacaaaac cttgctgaag tttaactaaa
     2341 aacataaaag ggaaaatttg ccctccatgt gtatgcccac ttaaaacaag atcaaaatca
     2401 cttaaatcat aaagcaaagc tgttttaggt tgatgtgtga gtaaaatact agctttactt
     2461 gtatttaaat ccacttttat tcttgctaaa tcaggagcat ataaacccct atcaagtccg
     2521 gctaaatctc caagtccagc aatatctata aaacccaaat ctaaattttg attgactaaa
     2581 attttcatat tagtatgttt tctaagtaaa tccaaaactt cattgatacc atgataatac
     2641 tcatgatttc ccaaagcata aaaagttccg taagtggagt taaaatcatt aagttttgag
     2701 atgtaatttt ttaaatcttt aggattagta tcaatcagat cccctactat tacaaccata
     2761 tcaggacttt gcaaattcac tttagtgatg agcttgtcta aaaaattttc atgcaaattt
     2821 ttacctaaat gtatatcagt aagcatgaca atttttaaat cttttttaag atttggtatt
     2881 tcaacatcaa cactctttac ttcaggtgtt tttagagcat tatttatact tgcataaatt
     2941 aaaaacacac ttaaaactat aagagaaagt tcaaaaatca aacgcaaaat aagattatat
     3001 gttttatctc ttttacccat aagagctaaa atcaatttaa caaaatccca agctaaagtc
     3061 ataaaaaaca aacaataagt cggcgcataa aacatggcta aaatttcata ccaagtatca
     3121 cttaaatatt catctctacg aaatattaaa aacacagctt gagctaaaaa aagcacaata
     3181 aaaataaagg aaaaaatttt ataaaaatac ttaaaaagag taattttctt gattaatctt
     3241 ttataaatat aaacatttgc taagccaaaa atcaataata caatgaaaga aaaaattaaa
     3301 aatatcataa aagtattata accaagtaaa attaaatatc cgtataaatt tttctgttat
     3361 aataagcttt taaataattt taaaggctat aagatgtacc gttttgcacc ttctcccaca
     3421 ggtgatatgc acataggaaa tttacgcgca gcaattttta attatatctg tgcaagacaa
     3481 aaaaatatgg attttatctt acgtattgaa gatactgata aggctagaaa tatagcagga
     3541 aaagaagaag aaatcaaaga aattttaaat ctttttagta tttcatggca gcattactat
     3601 atacaaagtg aaaatttaaa attccatcgc caaatggctt taaaacttgt aagcgaaaaa
     3661 aaagcttttg cttgtttttg caccgaagaa gaacttgaag caaaaaaaga gctggctaaa
     3721 aaacaaggta aagcttatcg ctacgatggc acttgtgaaa aactagccga tattgatgtt
     3781 ttagaatgtg aaaaaccctt tgttatccgt cttaaaaaac ctactcatac tatgaaattt
     3841 actgatttta tcaaaggcga gcttagtttt gagcctgaaa acatagattc ttttgtgatt
     3901 atgagaacgg ataaaactcc aacttataat tttgcttgtg cggttgatga tatgcttgaa
     3961 aatgtcactt gtattatacg cggagaagat catgtttcaa acactccaaa acaagaacat
     4021 atccgcgcaa gcttaggtta taataaagcc atgacttatg cacacttgcc tatcatttta
     4081 aacgaagaag gtgttaaaat gagtaaaaga gaagcacatt cttctgtaaa atggctactt
     4141 gaaagtggaa ttttacctag cgcaatcgca aattatctga tcatgctagg caataaaact
     4201 ccttgtgaaa tttttacctt agaagaggct ataaaatggt ttgatatttc taaagtttca
     4261 aaagctcccg caagatttga tcttaaaaaa ctcttacaaa tcaatcgtga acatatcaaa
     4321 atgatcaaag atgatgagct taataaaatt ttagatttaa acaaagatct tgcacaactt
     4381 gctaaatttt acactcaaga aacaagtact ataaaagaac ttaaagaaaa aatgcaagct
     4441 atttttaacg caaaagattt tggcgagttt gaaacagaat ataaaatttt aaaagaactc
     4501 ttaaaagata ttgaactttt tgaaaattat gaagatttta aaaatgaact tttaaataaa
     4561 agcaacttaa aaggtaaaaa atttttcatg cctttaagga taattttaac aggaaatatc
     4621 cacggacctg agcttagcga tctttatcct tatattaaaa attttattca cgaattagca
     4681 aggatttaac tatggttata gactctttta ttatttctat ttttcaagta ctacaaattg
     4741 tcattaacat ttatacttgg attattatca tcacagcact tctaagctgg gtaaaccctg
     4801 atccttataa tcctatagtg caaattttat ataaactaag ctaccctgct tacgccttag
     4861 ttagaaaaat tccaacacgc attggtaata ttgatcttgc gcctttgatt atagtcttag
     4921 cattgcagtt tcttggcatt tttcttggga atatcttaag gagtatattg tgataaaaaa
     4981 aatactcgtt tttttattta ttttttcaag tttaaatgct acacaatata gtatagaaaa
     5041 actcaaaaag gaagaaaatt cacttgctaa ggattattat atttataggc ttttagaaaa
     5101 aaataaaatc agtaaaaaag atgcacagga tttaaattct catatttttc gctatatagg
     5161 aaaaattaaa tccgaacttg aaaaaatcat ccctttaaag ccttatatca acccaaaata
     5221 tgctaaatgc tatacctata cagcgaatac tatcttagat gcaaatttaa cttgtcaaag
     5281 tgtgcgctta aattcattag tttttatagc gagtctaaat tccaaagacc gaactacttt
     5341 agctcaaacc tttaaaaatc aaagacctga tttgacaaat ttattgctag cttttaatac
     5401 ttctgatcct atgagctata tagtacaaaa agaagatatt aatggttttt ttaaacttta
     5461 taattattct aaaaaatacg acttagattt aaatacaggt ttagtcaata aactaccaaa
     5521 ccacattggt tttaaagatt ttgcacaaaa tattattatt aaaaaagaaa atccaaaatt
     5581 tagatattct atgctagaaa taaatcctga aaatgtaagt gaagattctg ctttctattt
     5641 aggagtcaat gccttaactt atgataaaac agagcttgct tatgactttt ttaaaaaggc
     5701 ggcacaaagt tttaaatcgc aaagtaataa agacaatgct atattttgga tgtggttgat
     5761 taaaaacaat gaagaagatt taaaaacttt atcgcaaagt tcttctttaa atatttatag
     5821 tctttacgca aaagaactta ctaacacacc ttttccaaag atagaaagcc ttaatccaag
     5881 caagaaaaaa aataatttta atatgcaaga tccttttgct tggcaaaaaa taaacaaaca
     5941 aattcgcgat gctaacgcaa gtcaactaga tgtcttggca aaagaatttg acacacaaga
     6001 aaccttgcct atttatgctt acatattaga acgcaaaaat aattttaaaa aacattattt
     6061 tataatgcct tattatgaca atataaaaga ctataacaaa acaagacaag ctttaatttt
     6121 ggctattgcc agacaagaaa gtcgttttat tccaactgct atttcagttt cttatgcttt
     6181 aggcatgatg caatttatgc catttttggc caatcacata ggggaaaaag aattaaaaat
     6241 tccaaatttc gatcaagatt ttatgtttaa acctgaaata gcatattact ttggaaacta
     6301 tcatctaaat taccttgaat cacgtttaaa atctccactt tttgtcgctt atgcttataa
     6361 tggcggtata ggatttacta accgtatgct tgcaagaaat gatatgttta agacaggcaa
     6421 atttgaacct ttcttgtcta tggagctagt tccttatcaa gaaagccgaa tttacggaaa
     6481 aaaagttcta gctaattata ttgtgtatcg acatcttctg aacgatagta taaagatttc
     6541 ggatattttt gaaaatttaa ttcaaaacaa ggcaaatgat ctaaacaaat cttagctaca
     6601 agcctagtct cttccttgac actaggaaga gatgctttaa aataatcagt atagttgttt
     6661 tgtattatat attttaaata ctcatcatcc aatttttcaa tattggcttt tttattattg
     6721 ataaaaactt ctaaattttg aatttttaat gtatttggag taaaagataa agctaataca
     6781 tcatctttac ttgtcttgtc tagaattggg tttaaataag acatagttat aatggcatta
     6841 atcttatctt gtgtgatttt gtatttttga gtaaacatta aagtttgaga ttttaaattt
     6901 gtatccacaa tcgcctgatc ttttaaagaa caagctccaa gcaaaaaagc acctaaaatt
     6961 acactataaa ttttcattct ttttccatat tttttagtat tattgtagcc ttttaaccct
     7021 attttttggt ttaaaaagat ataattttgc aaaaaaatta agagtatatt ttatgaaaca
     7081 acttattata gcttttagcg ggccttcaaa ttcaggaaaa actacactca tcactaaaat
     7141 agctgataat tttttgcaac aaaatttaaa agttttaatc attaaacatg accctgccga
     7201 taaagctcaa tttgatttta acggtaaaga tagttttaaa ttttttcaaa gtggagctga
     7261 agtcatggtt ttaagcccta caagaacaac ttttttttct catgaaaata gagatatttt
     7321 aaaagcttta aaattaagcc ctgattttga catttgtttg gttgaaggat taaaaactct
     7381 tgatttacca cgcattagcg tattttgcaa agaaattgat gaaagttatt ttattttttc
     7441 aaacgccatt gcaagctatg aaaaaatttc tcacccttat cttacttggc ttgatttaaa
     7501 cgatatacaa gctatttgcc aatacatact taaaaatgct aaaaatttac aaggagaatt
     7561 ataaaatgca agaagtgatt tcttatatac aaaaagcggt tttagaaatt tctaacgctt
     7621 taaaatttcc cgatacaagc tacagtcaaa atcaaaattt tacaggcgat acccaactca
     7681 aatttgatgt tttaagtgat gaaattatca caaaaaccct aagtcaatgt tcaagtatta
     7741 aagccatcat cagtgaagaa aaagatgaaa ttttaacgct taacgagagg gcaaatttta
     7801 tcgtagctta tgatccttta gacggttcta gcttaatgga tgttaatttt gccataggtt
     7861 ctatttttgc tatctatgaa gaaaaagcaa gtgctaaaaa tttaagagct gcgctttata
     7921 gtatgtatgg agcgcgatta gaacttgtga tttgcaaaga tcagccaaaa ctttatcgct
     7981 taaatgcaaa taatgaattt atttttataa aagatcttag aatgaatgaa aaaggcaaga
     8041 ttaatgctac aggcggaacg caaaaatttt gggaagaaaa acacgctaaa tttatcaaaa
     8101 gtctttttga tgaaggctat cgcttaagat attctggagc catggtaagc gatatcaatc
     8161 aaattttatt aaaagggggt ggcattttta gctatcctgc aacacaagat gcgcctaatg
     8221 gcaaacttcg tgcctttttt gaagtctttc ctctagcctt tatcatagaa aaagcaggcg
     8281 gaaaaactac aaatggaaaa aaccgctctt tacttgaact tgaatttgat aaaatccatg
     8341 cgacaactcc ttgttttttt ggctcagaat atgaaatttc aaaactttta aaggcttaca
     8401 atgaatgaag ttagagatga atttgagcaa gatatggata aaaaaaaaga aattttactt
     8461 tcatgtcaaa actcaaaaaa cctaaactct tgttataatt gcgatgaaat ttttaactgc
     8521 caaactagaa aaaattatgt tgatgcagtc tataacagta tgtctaaggg taaaaccgaa
     8581 ggcggatttg acttttaaag gaaaaaaatg cgttatatta caacaccaat ttattatgta
     8641 aatgatgtac ctcatttagg tcatgcttat actaccatca tagccgatac tttagcaaga
     8701 ttttatcgtt tgcaaggaca tgaaacaaga tttctaacag gaacagatga gcatggacaa
     8761 aaaatcgaag aagctgccaa actaagaaat tccactcctc aagaatacgc tgataaaatc
     8821 agttttgaat ttaaaaaatt atgggatgaa tttgaaatca cctatgatat ttacgcaaga
     8881 acaactgata caaggcatat tgaatttatt aaagctatgt ttttaaaaat gtggcaaaaa
     8941 ggtgatattt ataaagatga atacgaagga cactattgta tttcttgtga aagctttttt
     9001 actcaaagtc agcttattaa cgattgttct tgcccagatt gtggcaaaca aactagaatt
     9061 ttaaaagaag aaagctattt tttcaaactt tcaaaatatc aagataaaat tttacaatgg
     9121 tatgaagaaa aagatcccat cttgccaaaa aacaaaaaaa acgaacttat aaattttgtc
     9181 caaaacggcc ttaaagatct ttccattaca agaacaagtt ttgattgggg gattaaactg
     9241 cctcaagaaa ttaatgatga taaacatatt atttatgtat ggcttgatgc actttttatc
     9301 tatgtaagct cacttgactt tcaaaacaag ggagaaaatg ctaaattttg gcctgcgcat
     9361 gtgcatttag taggaaaaga tatcttgcgt tttcatgcca tttattggcc agctttttta
     9421 atgagcgtgg atttgccttt gccaaaattt ataggtgcac atggctggtg gactaaagaa
     9481 ggtgaaaaaa tgagcaaatc taaaggcaat gttgtaaaac ctaaagaagt agttgatgcc
     9541 tatggaagtg aagcttttag atatttcttg cttagagaag tgccttttgg taacgatggg
     9601 gattttagcg aaaatatgct gataaatcgt atcaatgcag agcttagcaa tgaatttgga
     9661 aatttactta atcgcattat aggtatgagt acaaaatatt ctcaaggaaa tatttcaaaa
     9721 gaaggtgttt taaaatttta caatgccgaa ctaaatcaag caaaagaaca cttaaattta
     9781 gcggtagaat ttttagaaaa cttacagtgt aatcgttatt tagaagaact ttttaaagcc
     9841 ttaagtgtgg caaatttagc cattagtaaa tacgaacctt ggagtttaat caaagaaaac
     9901 aaacacgaac aagctaatgc tttagtagca ctttgtgcaa atattttagc caaaacaagc
     9961 cttttattaa gccctactct accaaagtcc tctcaaaagg tggccttagc tttaaatttt
    10021 gaaatttcgt ctgcaaatta cacaaaaatg atacttgata atgaactttt agattttaaa
    10081 gcaaatcctt gcgaagcttt atttccaaaa gtagaaaaag ctcttttaaa acaagaaatt
    10141 aaagaagaac ctaaaaaaga agaaagtcct aaaataaaaa tcgatgattt tgcaaaaatt
    10201 gaaatcaaag ttgctaaggt acttgattgt caaaatatag aagggagtga aaaactttta
    10261 aaatttcaac tcgaacttga cgataaagaa atccgtcaag tactctcagg catagcaaaa
    10321 tactataagg ccagtgattt aatcggtaaa caagtttgcg ttataagcaa tcttaaaaaa
    10381 gctaaaattt ttggacatga aagcgatggt atgatacttt ctgcaaaaag cggagataaa
    10441 cttgttttaa tcgcccctga acaacttgtg caaaacggct ctttagtggg ttaaaatatg
    10501 caaattagca atttaggcga actgttaaac gcaacactaa ttcatgaagg tagtgtttta
    10561 agcgtggaag gttttgccat aaatttaaac gaacttaaaa caggctttgc cttctttaat
    10621 aacgataaaa aagaaattgc ccaagctgta aaaaaaggcg cttatgctat aattacagaa
    10681 aatgacatta ctattgaaga taaagaaatt ttttacttta gagtagaaaa tctagaacga
    10741 gctcttgtaa gatttttacg ctttttttgc gaagataaag aatgtgaatt tttacttttt
    10801 aaatcttacg aactaagtct ttgcaaggct ttttatttta acattttaaa aggaaatatt
    10861 tttgctgatt ttgaaaaact aatcaaagca aaaaagggtg aaattttttg ctactgtgaa
    10921 gaaaattact taaataaact ttgcacctat tctcatagtc taaaagatgc taattttacc
    10981 ttattatcgc gatctagc
//
LOCUS       DARBAR010000052        10912 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.052, whole genome shotgun sequence.
ACCESSION   DARBAR010000052 DARBAR010000000
VERSION     DARBAR010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10912
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.052"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..594)
                     /locus_tag="SB815_001024"
     CDS             complement(<1..594)
                     /locus_tag="SB815_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG0906760.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILEQKPYELSGGEATRVGLIR
                     ALILNPKLLILDEITSALDIKTSKEILTFLYDYQQKNN"
     gene            complement(587..1297)
                     /locus_tag="SB815_001025"
     CDS             complement(587..1297)
                     /locus_tag="SB815_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0906761.1"
                     /translation="MKVRNLNISSKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILKELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLNEFLRYYNA"
     gene            complement(1294..2088)
                     /locus_tag="SB815_001026"
     CDS             complement(1294..2088)
                     /locus_tag="SB815_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0906762.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLAPFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2075..3019)
                     /locus_tag="SB815_001027"
     CDS             complement(2075..3019)
                     /locus_tag="SB815_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0906763.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLYFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVIESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(3019..4554)
                     /locus_tag="SB815_001028"
     CDS             complement(3019..4554)
                     /locus_tag="SB815_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG0906764.1"
                     /translation="MLRWFVLLFLLFFNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINFVFSGLTRFNENMSLKPDLAKSWDISKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKNPKNNSSIYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPRHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIVKHIFDPS
                     IASAQLKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNLDNEFLKDLKVR
                     QALNYAVDKESIVKNLLHDYAFVANHPLELSWANSKNFKIYKYDSKKAEDLLVSAGFK
                     KNKDGNFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKTRTLGHHGVGFTWNVYE
                     WSK"
     gene            complement(4666..7437)
                     /locus_tag="SB815_001029"
     CDS             complement(4666..7437)
                     /locus_tag="SB815_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEG0906765.1"
                     /translation="MANFKAFYNEAKYIFKDRIFNDYARCYAYGIDASCYFYIPKIVI
                     IAKNEDEIKQIIQLANTYKTPITFRAAGTSLSGQSSCDGVLVVIKFAFKKIKINKDAN
                     EITLGCGVVGIHANESLAFLKKKIGPDPATINSALIGGIINNNSSGMCCGTKDNSYKT
                     LRSIRVILANGSMLDTSDALSVARFKDENKKLINELREIKEEINANKELKDLIIKKFK
                     IKNTTGYSLNAFVDYDDEIDILAHLLIGSEGTLGFVSEVKLAVLDDLEFKACALLFFD
                     NINNAANTIKEFAKVDFVSSAEIMDYASLKAASTYDELRDILADIKEGNICVLIQSEH
                     SNELKLDENINKIKEISKLAYKSYFSKNKAEYDLWWKIRKALLPIAASLRKAGSTVIT
                     EDVCFNIEDLADGIKSIQELFYKYGFGDNGIIFGHALAGNIHFIITPDLNNKLEFDNF
                     SNLVKEMSNIVASYGGSIKAEHGTGRMVAPFVEVEWGKQAYLINKKIKSIFDKENLFN
                     PDVIISDDKDIYKKNIKQASLIDEKLNTCMECGFCERFCPSNEYTITPRQRIAILREI
                     KRLESLNDDESKAKLKDIKKYYNHLVDSSCAACGVCSFSCPLGINFADFSLKYRKNNI
                     GFMSKILGNLAYKNHEKTLKIAKFSLSIANKFDNLSLDNKLEKASNFLSVIPRTRAYL
                     PKVNDYELKSRKRAYNVVYFTSCLNKSFKPNEKMYDKRSLQEVFESLCKKANIGIIYA
                     PNDLCCGKAYENFQDIQDKNIQKINDFLSNIDSPIVLDHSACSAKLISDHSKYEIYDL
                     SEYLLKFIAPKLRIDKINEDVGLYIMCAARKLGLNENIIKLAKLCTNGKVLIDNDTYC
                     CGFAGYKGFFNPKLNINATKGFKKFYAKTNIKRGFSTSSTCEIGLSDATGISWQHIAY
                     LLDECSEAI"
     gene            7588..8010
                     /gene="cgb"
                     /locus_tag="SB815_001030"
     CDS             7588..8010
                     /gene="cgb"
                     /locus_tag="SB815_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HEG0906766.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAKFYIDIEKKLYDK"
     gene            complement(8030..9661)
                     /locus_tag="SB815_001031"
     CDS             complement(8030..9661)
                     /locus_tag="SB815_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HEG0906767.1"
                     /translation="MPFIMELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVILLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKDKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(9711..>10912)
                     /locus_tag="SB815_001032"
     CDS             complement(9711..>10912)
                     /locus_tag="SB815_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0906768.1"
                     /translation="FFAEYIANVFFSKGMSEFWALLNTYGAFAAGYLARPLGGIVMAH
                     FGDKFGRKNMFMLSILLMVLPTFVLAFIPGYETLGFLAPVLLILIRIFQGIAIGGELP
                     GAWVFVREHCQEKQKAFFLSCLNSAMALGILLGSIVFLIINAFFSIEEIAAYAWRIAF
                     FVGGIFGIISIYLRRFLQETPVFKQMKKESSLSSFPLKDLFKEKDIVKNLFSSMMMTW
                     VLTGCVIVLVLLMPKFMPSILNLSGVEGSYLQILGILGIALGGAFMGYLVDKFGLFKI
                     CIFFSLTFVFFSFLYFYALYELKNLVLVCILYSIICFLGGINVFAPILMSEVFRAKIR
                     FSGISFSYNISYAISGGITPQLVFWLNTLASKNENPFLYGMSIYMIFLALLAICAVFI
                     VKDKIKF"
BASE COUNT         4145 a         1922 c         1222 g         3623 t
ORIGIN      
        1 attatttttt tgctgatagt catataaaaa agttaaaatt tctttagaag ttttaatatc
       61 aagtgctgaa gtaatttcat ctaaaatcaa caatttagga tttaaaatca aagcacggat
      121 aagacctaca cgcgtggctt ctcctccgct taactcatag ggtttttgtt ctaaaatttg
      181 cttttttaga ctaaaaaaat caaaaaattc taaaatcaag tcatcattct tttgtaaatt
      241 aaaattttcc aaaccatctt gtataagatt tttgattttt ttataagggt ttaaagccat
      301 tttttgatct tgaaagcaat actgaatttg ctttcttaaa agtctttgtt tgtttttatc
      361 aagcttgtgt aagttaagat tttcatacca tacctcaccc tcacttggat cttctaaaaa
      421 acaaagaatt ctagctaatg tgcttttacc tgcaccactt ttacctaaaa ttattaaatt
      481 gtcattttca tttaaagaaa aattgacatt atcaaaaata atatgtcttt ctttttttaa
      541 ataccaatgc tttttaagct cataaaactt acttaaatta caaactttaa gcattataat
      601 accttaaaaa ctcatttaag ctatataaat ttgaactatt tttttctagc ataagaattt
      661 catctgctaa agaatttacc aaatttaaat catgagtgat gcaaactaag gctgtagtat
      721 tttttaattc ttttaaaatc gatataatct tagaagcgtt ttctttatcc aaagaagctg
      781 tgatttcatc acaaattaaa atttggggtt gatttaataa tgccaaagct aggctcaccc
      841 ttcttgccat acccaaactt aattcattag cataagaatg ccacaaacga tcaagatttt
      901 caaatcctaa tttttgaaaa taagaaaaag cgtaatcttt tctttctttt tgttttaatt
      961 ttgtatgagt ttttaaaaca agatgacata aatttccaat atccaaataa ggataaagac
     1021 taagctctgc atcttgcaaa acaagtgcca ccttagaacg aaaatttcta agttcttctt
     1081 tattaaaatt aaaaatacaa gaattatgaa aacttaattc atcaaaactt attgtgaaat
     1141 tagaatctaa aagtcttacc aaagcttttc ctaacaaact tttgcccact ccactttgtc
     1201 ctagtatcat taaagtttta cctgttttta tatctaaatt aatatcctta agcaataaat
     1261 tatttttcga actaatattt aaatttctta ccttcaagat cttatacccc aaattttttg
     1321 taaaaaatta cccaaccata aaagaggtaa aaacaacaaa agcaagctta aaagtggaaa
     1381 aagtatcatc caccaagcgc ctataaaaac tgcttttgaa gattcactca aaagagtacc
     1441 taaagttgga atttcaaatc ctaaacccag cccaaaaaaa ctcaaagtag cttctgtggc
     1501 tatagcatga acgatattaa atataaaaag tgtaaaaatc agtgttttta aagcaggtat
     1561 taaatcttta aaaaaagctc taaatttagt tcttccaagc actatatttg ctttgtaaaa
     1621 atctaaattt tcaagtcttt ttaattcact ttctataatt cttgctatga aacaccaatg
     1681 aattaaagcg attaaaaaaa tcatcaaaaa cacatcagaa gttatcatac tttgaaaaaa
     1741 catcataagt aaaaaagcag gcaaggctaa aaaaaactct aaaatacgca tccaaaaaac
     1801 ataaaaaaaa catcgcgcta aaaacaaata gcacaaagca aagataatag acaataaaga
     1861 tccaccaaca ccgataatca aagaatttct caaagcaaaa agcaaacgag aaaacaaatc
     1921 tctgcctaaa aaatcagtcc ctaaaatata agtaaaatta ggagcttgat gcaaattttc
     1981 taaatgagtg cttaaaatat caaaaggagc taaaaaaggt gcaaacaagg cgcataaaaa
     2041 caaaaaaatt aaaggcgcaa gtatgataag aaatttaaac aaaatcaagc cttcttaatc
     2101 taggatttaa aatcctagct acaatatcac ttaaaaatgt aaaaaatgct gcaagcaaaa
     2161 cgctaaaaaa tataagtgca agtacaacag gataatcttt aaaaataata cttttaaaaa
     2221 gcaaagaccc aagcccctcg taagcaaaga cactttctat cacataagtt cccatcataa
     2281 aacttaaagc acttccccca aaataagcca caataggact taaagaatat ttcaaaacta
     2341 aaaaataaat atctttctcc cttaaagctc tagcgtataa attttgaata aaaatttgag
     2401 aaaaactttc attgataaaa tttctagcaa tccttaaaaa taacgccaaa tgtgataaaa
     2461 cgagcaccaa aacaggcaaa atcaaatgct ctaaacgatt taaaaaatca tcttcaaaac
     2521 ctatatcact gcttcccata acaggcaaaa ttttccaaaa aattccaaaa atcaaaacaa
     2581 acaataaagc caaaacaaaa ggaggtaaag caaaaaaatt aaaagctaaa aaagtaataa
     2641 ttttatctat aaaactttct ttataataat atcccaaaag tgccaaaaaa acactgagta
     2701 aaaataaaag cattaaggca ctaaaaccca aaataaaagt attaaaaatt ctttctttta
     2761 taagctttaa aacactttct ccgcttaaaa aagaaactcc caaatctcct tttaaagcct
     2821 taaaaagcca aattttatac tgctctagca aaggcttatc aagccctaaa ttttgttcta
     2881 ttctttgaac aaattcttta ctttgtgaat taactccatt agcataagct atactgcctt
     2941 tactaaaata aagtaaaaca aaacataaaa aagtgctaaa aaatgctatg aaaatactaa
     3001 aaactaagcg ttttagcact atttactcca ctcataaaca ttccaagtaa aacccactcc
     3061 gtgatgacct aaagtccttg ttttgatacc ttttaaatct ttattataaa ccaaagcaaa
     3121 atcaagatag gccaagaaaa taaaaggagg attttcatac aaagcatcta taaaatcttt
     3181 ataatatttt tttctctctt ctaaatttga agtatttctt gctttttgca aggctatatc
     3241 cactttttta tcatgataat gtccaaaatt ccaaccctca tcatttaaag cactatcttg
     3301 cgaactttca aataccctaa aagtgtgaaa atcaggatct aaaggacttc cccagcctat
     3361 taaaaaacta tctactttag aataatcaaa acttccagca ggtttagcca ccaccttgct
     3421 tacaactcct atttttctaa attcgctttg caaaattcca gctaaactta cccttaaagg
     3481 atcattgctc atcgcccaaa tttcaaattc taaaattttc ccatcttttt caaaatttcc
     3541 atctttattt ttcttaaaac ctgcactcac aagcaaatcc tcggcttttt tagaatcata
     3601 tttgtaaatt ttaaaattct tagaatttgc ccaagaaagc tctaaagggt gattagctac
     3661 aaaagcataa tcatgtaaaa gattttttac tatactttct ttatcgactg cgtaatttaa
     3721 agcttgtctt acttttagat cttttaaaaa ttcattatct aaattaaaca ttaaagcccg
     3781 ataatcagcc gatttttcac gcaaaattcc aaaattttca tcatttttaa aaatatttag
     3841 caaagaaaca tcgattaaag ctgcgtctat cttgccattt ttaagctggg cactagctat
     3901 agaaggatca aaaatgtgtt ttacaataag tcttggagtt tttaccttat caagataaaa
     3961 atgttcattg gctttaaatt caacatattc accttttttc cattttacaa atttataagg
     4021 acctgtacct ataggatttt gattaaaaga gcttgtgttt aaattctcat tttcaagcaa
     4081 atgtctagga agcattccta tgcttaaagc atctaaaaat gcaggataag gtttaaaaag
     4141 tgtgattttt acatgagaag gatttaaaat ttccacactt ttaatgtctt caaaattgac
     4201 ataaatagaa gaattgtttt taggattttt aaaggcttct atactaaatt tcacatcatc
     4261 agcactaaat ttgactccat catgccataa aacatcatct cttaaaaaaa tatcataaac
     4321 aagcccgtct ttactaatat cccaagactt agccaaatca ggttttaaac tcatattttc
     4381 attaaaacgc gtaagccctg aaaatacaaa attaatcact gcatcatgat cctcgctata
     4441 agcaggattt atccttgcga tttcattttc aactgctata ataagtgtat cttttggaat
     4501 tttagcctca agattgaaaa acaataaaaa cagcaaaaca aaccatctaa gcacttgcaa
     4561 ctccttgaaa tttaaagatt aaaaaattat aaaataaaaa acaagaagcc acaagcccta
     4621 tagggggata atttgtttaa attgtggagt tttatttatt ctatgttaaa ttgcttcact
     4681 gcattcatcc aataaatacg ctatatgctg ccaagatata cccgtagcat cacttaatcc
     4741 tatctcgcaa gtgcttgatg tactaaatcc gcgcttaata ttcgttttgg cataaaattt
     4801 tttaaagccc tttgtagcat taatatttaa tttaggattg aaaaaaccct tatatccagc
     4861 aaatccgcaa caataggtat cattatctat taatactttt ccatttgtgc atagctttgc
     4921 aagcttgatt atattttcat ttaagccaag ttttctagca gcacacatga tatacaatcc
     4981 tacatcttca ttgattttat caatgcgtaa cttaggggca ataaatttta acaaatactc
     5041 acttaaatca taaatttcat actttgaatg atcgctaatt aatttagcac tacaagcact
     5101 atgatctagc actatgggtg agtctatatt gcttaaaaag tcattgattt tttgtatatt
     5161 tttatcttgg atatcttgaa aattctcata agccttacca caacataaat cattgggtgc
     5221 ataaataatg cctatatttg cttttttaca caagctctca aatacttctt gcaagcttct
     5281 tttgtcatac attttttcat ttggcttaaa gcttttatta agacagcttg taaaataaac
     5341 cacattataa gctcttttac gactttttaa ctcataatca ttcaccttag gcaaatacgc
     5401 cctagttctt ggtataacgc taagaaaatt gcttgctttt tcaagtttat tatcaagact
     5461 taaattatca aatttatttg cgatacttaa tgaaaattta gcaattttta gagttttttc
     5521 atggttttta tatgctagat ttcctaaaat tttagacata aatcctatat tattttttct
     5581 atattttaat gaaaaatcag caaaattaat ccccaaaggg cacgaaaaag agcacacccc
     5641 acaagcagca caagagctat ctactaaatg attgtaatat tttttaatat cctttaattt
     5701 tgcttttgac tcatcatcat ttaaactttc aagacgtttt atctctctta aaatagcaat
     5761 tctttgtctt ggagtaattg tatattcatt cgatggacaa aatctttcgc aaaatccaca
     5821 ttccatacag gtatttaatt tctcatcaat caaactcgct tgcttgatat ttttcttata
     5881 aatatcttta tcatcactaa tgatcacatc aggattaaat aaattctcct tatcaaagat
     5941 acttttgatt tttttgttga ttagataagc ttgcttaccc cactctacct ccacaaaagg
     6001 cgctaccata cgccctgtgc catgttcagc ttttatactt ccaccatacg aagctactat
     6061 attagacatt tctttaacta gatttgaaaa attatcaaat tcaagcttat tgtttaaatc
     6121 cggtgtgata ataaaatgga tattgcctgc taatgcatgg ccaaaaatga ttccattatc
     6181 accaaagcca tatttataaa acaattcttg aatgctttta attccatcgg ctaaatcctc
     6241 gatattaaaa cacacatctt cagtaattac cgttgaacct gcctttctaa gactagctgc
     6301 tataggcaag agtgcttttc taatcttcca ccataaatca tattcggcct tattcttgct
     6361 aaaatatgac ttataagcca gtttggaaat ttcttttatt ttatttatat tttcatcaag
     6421 cttaagctca ttactatgct cactttggat caatacacaa atattgccct ctttaatatc
     6481 agctaaaata tctcttaact catcataagt tgatgcagct tttaaacttg catagtccat
     6541 tatttcagca gaacttacaa aatcaacttt agcaaattct tttatagtgt ttgcagcatt
     6601 attgatatta tcaaaaaaca ataaagcaca ggccttaaat tccaaatcat ccaaaacagc
     6661 aagcttaact tcgcttacaa atcccaaagt tccttcagag ccaataagca agtgtgctaa
     6721 aatatctatt tcatcatcat aatcaacaaa ggcattaagg ctataacctg tggtgttttt
     6781 gattttaaat tttttgatta ttaaatcttt taattcttta ttggcattaa tctcttcttt
     6841 gatctctcta agttcattaa ttaatttttt attttcatct ttaaatcgag ccacgcttaa
     6901 agcatcgctg gtatcaagca tactaccatt tgccaaaatc accctaatac ttcttaaggt
     6961 tttatagcta ttatccttag ttccacagca cattccgctt gaattgttat ttataatccc
     7021 tccaattaaa gctgaattta tagtagctgg atcaggtcct atttttttct tcaaaaaagc
     7081 aagactttca ttagcatgaa tgcctactac accgcatcct aaagtaattt cgttagcgtc
     7141 tttgttaatt tttatttttt taaaggcaaa tttaatcact acaagtactc catcacaaga
     7201 gctttgtcca cttaaacttg tacctgctgc tctaaatgtt ataggagttt tataagtatt
     7261 tgctaattga ataatttgct taatttcatc ttcattttta gcaataatca ctatttttgg
     7321 aatataaaaa taacacgacg catcaatgcc ataagcatag catctagcat aatcattaaa
     7381 aattctatcc ttaaaaatat acttagcctc attataaaaa gctttaaaat ttgccatagt
     7441 ccctcttttt atttattatc aattatataa tttaataatt taaagataat tttaaattta
     7501 tatttttgag cataatttta acacaagtca atttttttct cctttttaag atataaaata
     7561 tctcttttac aacaaaaagg agaaactatg acaaaagaac aaattcaaat catcaaagat
     7621 tgtgtgccta ttttgcaaaa aaatggagag gatttaacca atgagtttta taaaataatg
     7681 tttaatgatt atcctgaggt aaaacctatg tttaatatgg aaaaacaaat ttcaggagaa
     7741 caaccaaaag ctttagcaat ggcgatttta atggcggcta aaaatataga aaatttggaa
     7801 aatatgagaa gctttgttga taaagttgcc ataactcatg ttaatttagg agttaaagaa
     7861 gagcattatc ctatagttgg agcttgcctt ttaaaggcta ttaaaaatct tttaaatcct
     7921 gatgaagcca ctcttaaagc ttgggaagtt gcttatggaa aaattgctaa attttatatc
     7981 gatatagaaa aaaagctcta tgataaataa tataagccca ttttgggctt taatcaaatt
     8041 tttctactaa atttttagct aattccttta tattctcacc ctttaattcg ctgatttcac
     8101 cattttgagc caagaaaatt ctatcagcac tatcaaaata tgcatcatca tgcgtgatag
     8161 caaagattgt tttaccttgc tcttttagta aaggtaaaag ttttttataa aaaaatcttc
     8221 taaaaacagg atcttgatca gccgcccatt catcaagcac taaaatatcc ctttcttcaa
     8281 gcaaggctat aagcatagct aaacgctttt tttgccctgt agaaagtttg gttaaggtca
     8341 gttcattatc tttgacactt gttttatctt taagttctaa aaactccaac caaaaagcaa
     8401 ttttttcttc gcttgcaaaa ttttctttat ttaaggtttt agtaaaaaga tgaaaatcgc
     8461 taaaaacagc agaaataaga gatctatact catctaaatt tttatcatct ataagcgtat
     8521 catcaacata aattccacct ttgcttggct taaaaagtcc tgtcaaaagc atacaaaaag
     8581 tggatttacc acttccattt ttacctatta aaaataccaa ttcacctttt ttaagttcta
     8641 tatttacagg atttaagtga aaattttctt cataagcaaa ttgagtattt ctaaaagaaa
     8701 tttttttcca ttcgctaata taatgtgttt ttttaaaacc ttctatataa tcatctaatt
     8761 ccaattttgc gatcttatcc aaagcgattt ttgccaaaag caaagtagga aaagatccta
     8821 tcatggatac taaaggggtt cgtaaaaaca aaatagaaag agctatagtt gtagcatctg
     8881 caacacttgc ccattcaaat tttaaagcta agtaaaactc tacacccact aaagccaaaa
     8941 gaattacatt tgtccagttg tttgagagat tgttaaaaag attacctaaa gtactatttt
     9001 tctttttcaa tcttgcatta ttttcaaatt catcttcata ataaagcttg gctctatcac
     9061 gattgatcaa aagttcttta tgtccatcta gtatattttg gtaattattt tgcaaagcat
     9121 catcattttc ccttgccttt cgaaaatact gatatacttt catcatcaaa aaattattag
     9181 taataaaaat aaccataatc cataccacac acaaagcaaa aatttgtggt gaaagataac
     9241 ataaataaac actagtgcat aaaatcaata tacttgattg taaaaaatca ggcaatctta
     9301 aaagcccaaa agatatattt ctcacatcac ttcccaaaga agctaaaatt ctagccttac
     9361 ctactttagc gactcttaac aaaggggtgt ctaagatctg ctttactacg cgcctttgca
     9421 ttttaaaaat aaaattttgt ccaaaaatac taagtccaag ttcaactatg gtagaactta
     9481 taaaaaaaat caaaagcaaa acaataaaat aaaaaatagg aatgttttgt gcatttttaa
     9541 gcaaataatc attgataaaa acaagagtta aaactccaac agcgcttgta ataaaagaaa
     9601 aaagcaaaaa agaaatcaac tttaatttat tttgcttaag taattccata ataaaaggca
     9661 tttataaact ccaaaatata attttaatta taacatttta agagtgatta tcaaaatttt
     9721 attttatctt ttactataaa aacagcacaa atagccaata acgctaaaaa aatcatatat
     9781 atactcatac catataaaaa tggattttca tttttactcg caagtgtatt aagccaaaaa
     9841 acgagttgcg gagtaatacc gcctgaaatt gcataagaaa tattataaga aaaagaaatt
     9901 cctgaaaatc ttattttagc tctaaaaact tcactcatta aaataggtgc aaacacatta
     9961 attccaccta aaaaacaaat aatcgaatac aaaatacaca ccaaaaccaa atttttaagc
    10021 tcatataaag cataaaaata taaaaaagaa aaaaatacaa aagttaaaga aaagaaaatg
    10081 caaattttaa ataaaccaaa tttatctaca agataaccca taaaagcccc gcctaaagct
    10141 attcccaaaa ttcctaatat ctgtaaataa cttccttcaa ccccacttaa atttaaaata
    10201 ctaggcataa atttaggcat taataaaaca agcacaataa cacaacctgt taaaacccaa
    10261 gtcatcatca ttgatgaaaa taaatttttt acaatatcct tttctttaaa taaatcttta
    10321 agcggaaaag aactaagcga tgattctttt ttcatttgtt taaaaacagg agtttcttgc
    10381 aaaaatctac gcaaataaat agaaataatc ccaaaaattc cacctacaaa aaaagcaata
    10441 cgccaagcat aagcagcaat ttcttctata ctaaaaaaag cattaatgat taaaaatact
    10501 atacttccta acaaaattcc taaagccata gctgaattta aacagcttaa aaagaaagct
    10561 ttttgttttt cttgacaatg ttctcttaca aaaacccaag ctccaggcaa ttctccacct
    10621 atagctatgc cttgaaaaat tcttataagt atcaataaaa caggagctaa aaacccaaga
    10681 gtttcataac ctggaataaa agctaagaca aaggtgggaa gaaccattag taaaatactt
    10741 agcataaaca tatttttacg cccaaattta tctccaaaat gtgccataac tataccacct
    10801 aaaggacgtg ctaaatatcc agctgcaaat gctccataag tatttaataa agcccaaaat
    10861 tcactcatac ctttagaaaa aaatacattg gctatatatt cagcaaaaaa ga
//
LOCUS       DARBAR010000053        10888 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.053, whole genome shotgun sequence.
ACCESSION   DARBAR010000053 DARBAR010000000
VERSION     DARBAR010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10888)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10888)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10888
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.053"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(49..705)
                     /locus_tag="SB815_001033"
     CDS             complement(49..705)
                     /locus_tag="SB815_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HEG0906769.1"
                     /translation="MSKIDEISSKSKANILEHLKKAYKETTFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYSFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
     gene            complement(698..2137)
                     /locus_tag="SB815_001034"
     CDS             complement(698..2137)
                     /locus_tag="SB815_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HEG0906770.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKIMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWTVQNFASILPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            complement(2134..2874)
                     /locus_tag="SB815_001035"
     CDS             complement(2134..2874)
                     /locus_tag="SB815_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG0906771.1"
                     /translation="MMKKVYFYATCLGSTAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKI
                     KTFSSRVIELSQYLDEVLKVDYEDKGVPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGGRL"
     gene            complement(2998..4680)
                     /locus_tag="SB815_001036"
     CDS             complement(2998..4680)
                     /locus_tag="SB815_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEG0906772.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIILIGIWTCIIAFFLQGIIPEVIVK"
     gene            complement(4852..5421)
                     /gene="cdtC"
                     /locus_tag="SB815_001037"
     CDS             complement(4852..5421)
                     /gene="cdtC"
                     /locus_tag="SB815_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HEG0906773.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            complement(5432..6229)
                     /gene="cdtB"
                     /locus_tag="SB815_001038"
     CDS             complement(5432..6229)
                     /gene="cdtB"
                     /locus_tag="SB815_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HEG0906774.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            complement(6226..7032)
                     /gene="cdtA"
                     /locus_tag="SB815_001039"
     CDS             complement(6226..7032)
                     /gene="cdtA"
                     /locus_tag="SB815_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HEG0906775.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAANGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            7145..7378
                     /locus_tag="SB815_001040"
     CDS             7145..7378
                     /locus_tag="SB815_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HEG0906776.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            7379..8941
                     /locus_tag="SB815_001041"
     CDS             7379..8941
                     /locus_tag="SB815_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEG0906777.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQTLKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            8941..10065
                     /gene="cydB"
                     /locus_tag="SB815_001042"
     CDS             8941..10065
                     /gene="cydB"
                     /locus_tag="SB815_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEG0906778.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMINSILFL
                     PFFLGFLAWIFLKDGFSVDTNGVVSMSANLYLYNFLNQMIFAVLLVIGVILVLLGMVQ
                     GTKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(10259..>10888)
                     /locus_tag="SB815_001043"
     CDS             complement(10259..>10888)
                     /locus_tag="SB815_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HEG0906779.1"
                     /translation="NQAINDKLKSLNSAKILLYSVNFEEIENLQSQDKWQEAAQILTQ
                     CAKKLELAGANFIIIATNTMHKVFDEIQQNINIPILHIAKSSAKALKQENIQKIGLLG
                     TKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDIIFNELCKGEIKQDSKEKYLNIIK
                     KLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLIHALDAANEALKDL"
BASE COUNT         3495 a         1766 c         1750 g         3877 t
ORIGIN      
        1 atatataatt aatattaaaa attaagactt actgattcta gtatagaatc agtaaataat
       61 aatatgtgca atttgtggcc catgaacacc aaaaacagtg ataagttcta tatctgctgt
      121 tcttgaaggc cctgctataa ataagatatt agtaggtaaa atttcatttt ctttttttac
      181 taaatttaaa gcttcgctaa gacttttaac aacattttct tttttaagca atactatgca
      241 aagtttaggt gcaaggctta gcattctagg ttgggtttta cttgaaggta taagtgcaac
      301 tccgtgagag cttacccctg ctcttgcgtg aatgatggaa aaatcactat gaaaaacttc
      361 agatcttaaa ttttcgattt ctttatcaaa gcaaatcttt ttttctgctt tgatttgttc
      421 taaatttaaa tttaaatccg ctccataaat catactttta aagctatatt ttgcgacaat
      481 ttcattgatt ttttcttcta aggtatcttt tgtagcattt tcaacgatgt atttgttatc
      541 gctcattttt tgcttcattt ctgtaagcat atcttgggtt gtctggatat gttctacagg
      601 atctatactt tcaatgcgtg tgaaagttgt ttctttgtaa gcttttttaa gatgttctaa
      661 aatatttgct ttgcttttgc ttgaaatttc atcgatttta ctcatagctt actccttcta
      721 gtttttgcac ttctttataa agatccattt taatttgagg taattcttta aaagcgtacc
      781 attttttaat cacaggcaaa atgcttgcga aattttgtac cgtccagttg aaataatgtg
      841 cttttgaaag tgaaaaacgc catttatcgc cattggttgc gatattttta aattgtttaa
      901 aagcaaaggc ttctagggca ttgtgatgaa cattatttgc tcctaaaggt ggatttttac
      961 cttgtcctat tttatcacat cttaatttgc gaataagatc agccaaagga atttggactg
     1021 gacaaacttc agaacaacgc ccacaaagtg aacagaaatt caaaatatct cctgtatgat
     1081 ctataccaaa aatattagga ctgattactt ctcctatagg tcctggataa gtggtttgat
     1141 aagcatgtcc gccgatttga tcataaacag ggcaaaaatt catacaagcc ccgcatcgaa
     1201 tacaacgcaa agcctcataa taatcctcat gagctaacat tttagagcga ttgtgatcaa
     1261 ataaaatcac atgtacttct ttaggaccat ctaaatctcc attttttcta ggacctgtaa
     1321 tgatattgtt ataagttggt ataaattgtc ctgtggctga aggagtaagt aaagaaacca
     1381 tagtagccgc atcttcaaag ctttccatga ttttttctat accacaaagt gcgatatgaa
     1441 tatcaggtgc tgtagtgcac attctaccat ttccttcatt ttctataagc caaaaagctc
     1501 cttctcttga catggcaaaa ttgaccccac taagtccaag ttttaagcct tcaaaatctt
     1561 ttcttaaatg ttctctagcc accgcattta aactttcggg ttcatcgttt tctaaatttg
     1621 ctcctaattt ttctttgaaa atttctccga tttcatggcg gtttctatgt atggcaggta
     1681 caactatgtg taaagggggt tcttcattaa gctgtaaaat aagctctcca agatcggttt
     1741 ctatagcttt taaacctttt ttttctaggt agtgatttag gcctatttct tcacttgcca
     1801 tagacttgcc ttttaaaagc ttggtgatat ttttttcttt catgatttca tagacgattt
     1861 cacaggcatc ttcatcacta cttgcccaat gcaccttaat gccatttttt gtagcatttt
     1921 tttcaaattc taaaagtctt tcttctaagc tcattaaggc attattttta gcttgcttag
     1981 ctttagctct taagccctgc cagtctttaa atctagcatc aataacattg agtctatttt
     2041 tttgcaaagt atgcatggca gtcattaaat tttcttgcat ttgtttgtca ttgagtttaa
     2101 tttgaacgat ttgttcgtga ggaatttttt gactcatagt ctccctcctt ctaagcgttt
     2161 aagtaaaaag tcatataaat gtatgccttt tatatccaaa cccattcttt tcattgtgcc
     2221 atctatattt aaaagacaac ctccatcacc actgatgaga tattttgcac cgctattttg
     2281 tatatctttg attttgcttc ttaccatagc atttgaaatt tcaggctctt ttactgaaaa
     2341 ggttcctcca aaaccacagc attcttcttc gtattgaagt tctactaatt ctacgttttt
     2401 tagttttttg ataagatttt tactcgcttg tatgcttttt tgcactctta aagcatggca
     2461 attagaatgc caagttactt ttataggtac acctttatct tcataatcta cttttaaaac
     2521 ttcatcaagg tattgtgaaa gttctatcac tctagagcta aaagttttta ttttggaaaa
     2581 ttcaggtctg tttttaaaaa gctctttata gtcatgactc atcatacccg cacaagaacc
     2641 actgggtaca acgatgggat aatctttatc aaataaatct acattatata aagcgatctc
     2701 acgactttca tcgaaataac ctgagttaaa agaaggttgg gcgcaacagg tttgattttt
     2761 tttgaaaatc acttcaatac cctcacgcct taaaagtttt atcgcattta aaacgctttg
     2821 ttgcatagca gtacttccta agcatgtggc gtaaaaatac acttttttca tcatttttct
     2881 ccttttagga taatttagga taaatgttct aatcctgtaa aaataaaagc aaagtaaaat
     2941 ttctaacaaa tattctaaaa acgaatattt gttgaaataa aacttaaatt tttttaatta
     3001 tttcactata acttcaggga tgattccttg taagaaaaaa gctataatgc aagtccaaat
     3061 tcctattaaa ataataaaag ctacagaata ttttaatgtg aatttgaaaa gatcagattc
     3121 ttttcccaca agtccaaccg ctgcacaagc tatagcaatg ctttgtggac tgatcatctt
     3181 cccaacaacc ccacctactg aattagctgc taaaaataaa gcttcgctaa tacctagttt
     3241 ttgagcgctt acttgttgca aggttccaaa aagtaaatta gcacttgtat cagagcctgt
     3301 taaaaatacc cctatccagc caatgattgg tgaaaagaaa gaaaaagcat cacctgtgtg
     3361 tgcaaaagca agtcctaaag tagtgctcat accactattt ttagagataa aagcaaaggc
     3421 cacaaccaaa cctatggtga tacaaggtat agccatttct tttaaggtaa cccaaaagca
     3481 ttctgcagca tcttcggctt tgatttttaa aatagctata gttaaaaaag cggcaagtaa
     3541 aatcgctgtt cctgcttgag ctacggtttt tccattgatt aaatctacac ccaaggccaa
     3601 agataaaggc ttagcttctc ctatgcctgt gatagaaggg cttaaaattc cagttgtgat
     3661 attgctaaat tgtaaagtaa tacttgtata gcttaaaatt ccgtccttat caaagagagc
     3721 tttaaaccaa ggttgtgtcc aaatgataat acaaacaatg agtaaaataa aaggtgacca
     3781 agcttttaaa atttgattaa aacttaaggt gttatcttga gtgaaattgc tttcattgtc
     3841 aaatctaaaa atattttttg gtttccaaaa tttcaaaaat acagtcgtaa ctgctaaaga
     3901 aaccacagct gaaataatat caggtaattc cgctcctagg tgatttgagc ttaaaaattg
     3961 agtagttgta aaacttagcg ccgcaactaa aatagctgga aaagtttctt taataccttt
     4021 aaatccatcc attaaaaaaa ctatgaaaaa aggtatagta aggcttaaag gaactagcat
     4081 tctacctacc atggcagaaa ctgaatgctg ttctatgccg acaagatttg ccatagcaat
     4141 aataggaatt cccaccgcac caaaagcaac aggagcggta tttgcgataa gacaaagccc
     4201 tgcagcttgt aaaggacgca agccaagtcc tactaaaagt gcagcggtta tagccacagg
     4261 gccaccaaaa cctatagcac cctctaaaaa tgaaccaaaa caaaaaccta ttaaaatcac
     4321 ttgaattcta tgatctggag taatgctcat cacgcttttt ttaatgattt caaaagaacc
     4381 tgacttgata gaaagtttgt aaagaaagat tgccgcgatg ataatccaag ctataggcca
     4441 cataccattt gtaaagcctt gaataaaact tgcacccact aaattccaag gcattttata
     4501 ggcaaataaa gctactaaag tagcaagtat aacagttaaa aaacctgctt gatagccttt
     4561 aagttttaaa acaaccaaac aaactaaaaa acatagtata ggtaaaaatg ccactaaagc
     4621 acttagccaa atatttgaaa aagggtcata aatttgttgc catgttaaaa tttgttccaa
     4681 tttttcctcc ttgataatta ttatgtataa atttattgta acaaaaaatt acattaaaat
     4741 aaaaaaatta tagagcaagg taaattacat tgtattatta ttaattattt tgtgtatttt
     4801 agtaatatca taaatattaa ataaatataa aaatagaaca agataaaaat cttattctaa
     4861 aggggtagca gctgttaaag gtggggttat aatcattagt tcatttactt cagcaaaaaa
     4921 aataggatct agggtgcaag gggctattcc aaagcgtttt tgtataggaa tatttggatt
     4981 aaaaaaagtt actatacatt catcagattc caaaactaaa gaacgaattt gcacagctga
     5041 agttgttgtt ggcattatag aaaatacagt ttctaattta ccatctttta gatcatcttg
     5101 acaagatttt gctccaaagg ttccatcttc taagatggct aaacaaagat cgctttcttt
     5161 tggatttgta aattgcacat aaccaaaagg aagttcatca gctaatttat ctttttgttt
     5221 taactcatcg cttaaaacaa tttctttaat attccaattt tgatcaatag gatcttttga
     5281 ggtatcccta aaggcgctta aaaaaattcc cgtttctaag cttcttatag aaaccatttc
     5341 ggtaaaatct ttcaaatctc cagtaggagt tgcaaaggct aaagttataa acataaaaaa
     5401 caaagtaata atttttttca tattaaatgt cctaaaattt tctaaaattt actggaaaat
     5461 gatctgaaac tatatgagat cttaaacttg caagcattaa aatcgcagct aaaagcggtg
     5521 gagtataggt ttgttgtcta tttgaatttc ctgtaattgc ataatcaaga gtccctccgc
     5581 ttgcttgagt tgcgctagtt ggaaaaacca ctctaattct atttgctaat tctctatcca
     5641 ctgtacttgt tatagtagaa ggatcacggt taaaatcccc tgctatcatc cagttaactt
     5701 gaggcatatt tgcaaaatgt gcatctacag ctgtgataat tgctcctaca tctgttcctc
     5761 cattagctaa agcatggata ttgaaaaaag catcatttcc attgcgaatt cctataatgg
     5821 gtcttgaaac tgtagtaggt ggaggtaaaa caatcacttc ttcagcttgc attcttgaaa
     5881 ctatagctaa atttacacga ttagctccta catcaacgcg agaataataa ataaaaaccc
     5941 tatcaggcct tgaaagagtt cctaaattcc actcatattc atcaataggt gttccacctt
     6001 gttgcacatg gcgtcctgtt ggagtggctg ttcttggtaa agttcctgct tcttgtatca
     6061 ttaagatatc taaggggttt gctccactta caagttgtct tacactaaca ctccatttgc
     6121 tttctgtggc tgcggatgag ccttgcaaat tccaagtgcc aacattaaaa ttttctaaat
     6181 ttgcaaaagc aaggttaaaa gataaaaata aacatataat ttttttcatc gtacctctcc
     6241 ttggcgatat aaaggttttg cggtaaaagg cggagtagtt aaaaaccatt gttgatcaaa
     6301 attatctttt tttgcacact ctacggtaaa aattttaaaa accttgtgaa aatcaccata
     6361 aagatttgta ataggtgctt gtatgcattt tccatttcct aaatttttaa tttgaaccgc
     6421 tgtattgctc atagggataa gtttccacat ttgtgcgtga ttgcttgcat cacaaggata
     6481 atggacaatt ccattaccat aagcattaag acaagtattg gttttggcat ttttaatcat
     6541 tgcaaaatca ttaggataaa gcaaaagttg ccaaactcta gcatcgccaa atcctttgct
     6601 atcgattaaa gtatagcccc aaatccaatt tccttgtgct aaagcccaaa ccgttaaagc
     6661 tgctccgcta gggcctaaaa tggttaaaaa atcagaaacc gcagggcgat tttcaaaaat
     6721 taaaacatca ttaaaagctt cgtctttaaa gcgaggattg atcccatttg ctgcattatt
     6781 gttggcacta ttgcttgttc tagttaaagg tggggtaata ggagtaatag gtactaaatc
     6841 agcaccgcta attaaacttg gaatttcttg attggtagga aaagtaggtt caagtcctag
     6901 ttttaaagga tcagtatctt caaattctcc aaatgaacgc cccaaaggat ttacattttc
     6961 aaatttagaa gaacatgcat aaagaaaaaa agtcataaaa caacataaaa taaaaactat
     7021 aattttttgc attaaaaacc ttgatatgta tttaaatttt taagaaaata ataacataaa
     7081 tttcattata attttccgct ttttaaaaat gttttatttt gttgttttta aaggtagaat
     7141 ttatatgtat cttaaacact tatattttag catctctcaa atttttaatt tttacaaaga
     7201 aggttttaaa aatttaactc ttggaaagac cctttggaaa attattttta tcaaactttt
     7261 tgttatgttt gtgattttaa aactttttgt ttttgatgta aattttaatt ctatttttaa
     7321 aagcgacaaa gaaaaaagca cttttgtact caaaaatctt acactcgaag gaaaataaat
     7381 gaacgaactt agtagcgttg attggtcaag agcgcagttt gctttaactg cactttatca
     7441 ttttttgttt gtgcctttaa ccttaggctt gtcttttatg atcgctatca tggaaaccat
     7501 ctatgtaaaa actaaaaatg aaagatggaa aaaaatcacc aaattttggc tttcattatt
     7561 tgctataaat tttgctatcg gtgtagctac aggcattata atggaatttg aatttggaac
     7621 aaactgggca aattatagct ggtttgtggg tgatattttt ggtgcacctt tggcggttga
     7681 aggtattatg gcattttttt tagaggctac tttttttgca gttatgtttt ttggctggga
     7741 taaagtaagc aagggttttc acttactttc aacttggtgt gtggctatag gaagtaatct
     7801 ttctgctttt tggattttag tggcaaatgg ttggatgcaa tatcctgtag gaatgagctt
     7861 taaccctgac acagcaagaa atgaaatgca aagctttttt gaagtagcac tttctcctgt
     7921 agctatttca aaatttttac ataccatagg cagtggttat gtaatttcag ctttatttgt
     7981 aatgggaatt tcagcttggt ttatgttaaa aggacgccat attatcgagg ctaaaaaaag
     8041 cttagttgta ggagctagtt ttggtttggt ttgttcaatc tttttgtttt tcagcggaga
     8101 tgaaagcgct taccgtgtaa ctcaaactca acctatgaaa cttgcagcta tggaaggggt
     8161 ttatcaaggt gaacatcgtg caggacttgt accttttgga attttaaatc ctaaaaaaac
     8221 catagataat aacgaaagtg tgtttttatt tgacattact ataccttacg ctctttctat
     8281 attaggaaac cgtgatccaa attcttttgt tccaggaatt gaagatttga tctatggaaa
     8341 tgaaagcaaa ggtatagaac ctatgcaaaa tcgtatcgat agaggaaaaa tcgctataca
     8401 aactctaaaa gactataaac ttgctaaaga aaacaatgat acaatagcta tggcaaatca
     8461 caaatccatt ttagaaactc attttaaaga ttttggttat ggatatttag aaaaaccaag
     8521 cgatactatt ccacctgtgg ctttaacttt ttatagcttt catatcatgg ttgctttagg
     8581 aagttttttc tttttacttt tcatcgttac gctttatctt accatggcaa atgatattga
     8641 gaaatttaga aaagtacttt gggtgtgttt gttatccatt ccattgggtt atattgccgc
     8701 tgaagcaggt tggattgttg ctgaagtagg cagacaacct tgggcaattc aagacttgct
     8761 tcctgtacat atcgcagcaa cacaacttgg aaaagtcaat gttcaaattt cattttggat
     8821 ttttgcagta ctttttacag cattattgat tgcagaagtt aaaatcatgc ttactcagat
     8881 taaaaaaggt tttgacgcac atgcaggaca tactccactt atgggcaaag gagaaaaata
     8941 atgttttttg gtttagaact tgaaggtttg caaatttatt ggtggttgat tttaagttta
     9001 cttggtggac ttttagtttt tatgtttttt gttcaaggtg gacagacttt aatcgatgag
     9061 cttagcaagg atgagcttga aaaaactatg ctagttaatt ctttagggcg taaatgggag
     9121 cttggtttta caactctcgt actttttggc ggagcagctt ttgcagcttt tccacttttt
     9181 tatagtacaa gttttggcgg agcttattgg gcttggcttt gtattttatt ttgttttatt
     9241 ttacaggctg tggcttatga atatcgcaaa aaagaaaata atgtttatgg ctctaaaacc
     9301 tatgaaattt ttcttaaaat taatggttat ttaggtgtgt ttttaatcgg agttgcagta
     9361 agtagttttt ttagcggttc tgaatttatc ttaaatgagc ataattttgt ttcttggcaa
     9421 aatcctttgc acggcttaga acttttactt aatcctttta attatctctt aggcttagct
     9481 ttagtatttt tagcaaggct tttaggcgca gcgtatttta tgaacaatat caatgatgag
     9541 aatatcaaaa taagagctat gaaaaaactc atgatcaata gtattttatt tttacctttt
     9601 ttcttaggtt ttttagcgtg gattttctta aaagatggtt ttagtgtaga tacaaatgga
     9661 gttgtaagca tgagtgcgaa tttatattta tataatttct taaatcaaat gatttttgct
     9721 gttttgcttg ttattggtgt gattttagtg cttttaggta tggttcaagg aacaaaaggt
     9781 tgctctaaag ctatttttac cctaggactt ggaacggttt taacagtttt tgctttatta
     9841 tcaagcattg gtttaggtca aagtgctttt tacccatctt taagtgattt acaaagttct
     9901 ttaactttaa aaaatgcaag ttcaagctat tatactctaa gcgtcatggc ttatgtatct
     9961 ttacttgtac cttttgtttt agcttatatt atctatgttt ggaatgcaat ggataaagta
    10021 aaaatcacac gcgaagaaat cgcaaacgat gatcacgcat attaaggaga aaaaatgtta
    10081 catgctttgt ttttattggc ttggccttta gtaatttatc tgagctataa atttataatg
    10141 ctaaatatca atcaattaga aaaagatagc aaactataaa gcaagataag atttaaaccg
    10201 atataagtat aaatcttttc aaaatattgc aatttgccca tttttgggta tcttttaatc
    10261 ataaatcttt taaagcttca ttagcagcat caagggcgtg aataaggctt gtgtcaaaaa
    10321 ttttgatatt tgtatcattt ttggatatta ataaaccaat ttcagtgcaa gctaaaagca
    10381 ctccttttgc ccctttttct tgtagttttt ttataatatt taaatatttt tctttagaat
    10441 cttgcttgat ttcacctttg caaagctcat taaaaataat atcattaacg atttttatat
    10501 cttcatcact aggagtaata acgctaatat tttcttcaat cagcattttt ttataaaaat
    10561 cctgcgtcat tgtgtattta gtacccaata aaccaatttt ttgtatgttt tcttgtttta
    10621 aagccttagc agaacttttt gcaatatgta aaatagggat atttatattt tgttgaattt
    10681 catcaaaaac cttatgcata gtattagttg caattattat aaaattagcc cctgcaagtt
    10741 ctaatttttt agcacattga gtcaaaattt gtgcagcttc ttgccattta tcttggcttt
    10801 gtaaattttc tatttcttca aaattaacac tgtaaagtaa aatttttgca gaatttaaag
    10861 attttaattt atcatttata gcttgatt
//
LOCUS       DARBAR010000054        10367 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.054, whole genome shotgun sequence.
ACCESSION   DARBAR010000054 DARBAR010000000
VERSION     DARBAR010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10367
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.054"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..574
                     /locus_tag="SB815_001044"
     CDS             <1..574
                     /locus_tag="SB815_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HEG0906780.1"
                     /translation="CKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYDDYEKETITLLEN
                     IKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQEIDSEVLSELRRL
                     NQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKEFIDDINKQIKVG
                     KEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            575..1342
                     /gene="hisF"
                     /locus_tag="SB815_001045"
     CDS             575..1342
                     /gene="hisF"
                     /locus_tag="SB815_001045"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEG0906781.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            1344..1967
                     /locus_tag="SB815_001046"
     CDS             1344..1967
                     /locus_tag="SB815_001046"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HEG0906782.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(1992..3152)
                     /locus_tag="SB815_001047"
     CDS             complement(1992..3152)
                     /locus_tag="SB815_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HEG0906783.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(3178..4284)
                     /locus_tag="SB815_001048"
     CDS             complement(3178..4284)
                     /locus_tag="SB815_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEG0906784.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNTIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPIAAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSKRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            4407..5522
                     /locus_tag="SB815_001049"
     CDS             4407..5522
                     /locus_tag="SB815_001049"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HEG0906785.1"
                     /translation="MSEMSLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSSVNLKYFDWTRL"
     gene            5519..6406
                     /locus_tag="SB815_001050"
     CDS             5519..6406
                     /locus_tag="SB815_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEG0906786.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKAAEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCINLNDNEKNINSNEILTIDEYVKYVIINYQNIFPDTDLSKKLG
                     ISRKSLWEKRKKYEISKKK"
     gene            6384..7544
                     /locus_tag="SB815_001051"
     CDS             6384..7544
                     /locus_tag="SB815_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEG0906787.1"
                     /translation="MKSARKNKNIIIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLMLDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFIRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            7549..8049
                     /locus_tag="SB815_001052"
     CDS             7549..8049
                     /locus_tag="SB815_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEG0906788.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            8128..8391
                     /gene="rpsT"
                     /locus_tag="SB815_001053"
     CDS             8128..8391
                     /gene="rpsT"
                     /locus_tag="SB815_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEG0906789.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGNK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            8410..9477
                     /gene="prfA"
                     /locus_tag="SB815_001054"
     CDS             8410..9477
                     /gene="prfA"
                     /locus_tag="SB815_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEG0906790.1"
                     /translation="MLASKLDPFFKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGTGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(9491..10246)
                     /locus_tag="SB815_001055"
     CDS             complement(9491..10246)
                     /locus_tag="SB815_001055"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HEG0906791.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDAIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNANGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAVS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVAHVGASGNPHKFLHKH"
BASE COUNT         3769 a         1618 c         1592 g         3388 t
ORIGIN      
        1 ttgcaaaaca atttaccatg aacaaagcaa aaagggtaaa ggtggggaag ataagtggaa
       61 ttatcctgat attgtagggg tttattttcc ttatgatgat tatgaaaaag aaaccataac
      121 acttttagaa aatatcaaac aaaacagcta taaacttttt tcttttgaac ttaaaattgc
      181 tttaaatttt tcaaatttaa aagaatgcta ttttcaagct gtaagtaatt ctagctgggc
      241 aaatgaaggc tacttggttg ttttacaaga aattgatagc gaggttttaa gcgagttaag
      301 acgcttaaat caaagttttg gcataggagt gataaaactt gaaaaagata tttcaaattc
      361 tcaaatttta attagtgcaa aagaaaaaga acttgatatt caaacactaa atatgctgat
      421 caataaaaat ccaaatttta aagaatttat tgatgatata aacaaacaaa ttaaagtggg
      481 caaagaagca aaaattcaag ctaattttga tgaaattaaa agcgatgaag aaatggaaaa
      541 atatcttaaa gaaaaatgta ttttggagaa ataaatgctt acaaaacgca taattgcatg
      601 tttagatgtt aaagatggca gagtagtaaa aggaacacaa tttaaaaacc ataaagatat
      661 gggagatatc atagagcttg ctaggtatta ttctcaaaat ggtattgatg aacttgtttt
      721 ttatgatatt gctgcaagtg ctagaaaaga acgcatatca agagaatggg taagtgaagt
      781 agcaaaaaat atcaatattc ctttttgtgt tgcagggggt attaaaagcg aagaagatgc
      841 agctgaactt ttggctaatg gggcagataa aatttccatc aattctcctg ctttaaatga
      901 tccaagccta atcacacgcc ttgctaaaag ctttggcgtg caatgcgtag tagtagggat
      961 tgatagtttt aaagatgaaa atggaaattt aaaagtattt caatacacag gggatgaaaa
     1021 aacaagtaaa catagtggaa aaagcacttt agaatgggtt aaaaaagtgc aagatctagg
     1081 tgcaggcgaa attgttttaa atatgatgaa tcaagatggt gttaaaaatg gctatgattt
     1141 agaacaatta gaagctgtat ataaaatttg taaagtacct ttaatcgcaa gtgggggagc
     1201 gggaaaaatg gaacattttt tagaagcttt taaactaggt atagatgggg ctttagctgc
     1261 ttctgttttt catcaaaaac ttatagacat taaagaatta aaaatttatc ttaaaaatca
     1321 aggcttaagt ataaggatat aatatgcaaa atttcaaaga acttaatgaa aaaatcgctt
     1381 ggcaaaaagt ggataatctt ttacctgtca tcatccaaga tgcaaaaact tgcgaagttt
     1441 taatgctagg ctttatgaat aatgaagcct tagaaaaaag cttagaaagt ggcaaagtag
     1501 tctttttttc acgcacaaaa cagcgtcttt ggatgaaggg tgaagaaagt ggaaatttct
     1561 taaatatcat agatttaagc ttagattgtg ataatgacac gcttttaatt ttagcaaatc
     1621 ctgtagggcc tacttgtcat acgggcgata tttcttgttt tgaaaaaatt tctaaaaatg
     1681 cagattttgt ttttctagcc agacttgaaa aacttattaa tgcacgcaaa aatgccgatg
     1741 aaaatacttc ttatacagca aaacttttca aaagtggtac aaaacgcatc gcacaaaaag
     1801 ttggtgaaga aggcgtagaa acagctttag cagcgacagt aaaagataaa gaagagctta
     1861 tttgtgaagc agcggattta atgtatcatt taagtgtttt acttgcagat gcaaatctta
     1921 gtttctcaga tgtgatttca aaattaaaag aaagacataa agcttaaagc tttatgtaaa
     1981 ataaatttat atcaatgcaa ggcttcatta agtttgactg cttttttatt taaagctact
     2041 atcatagcac cacttataga atcttgacgg aaatgtagcc catttaaacc tttaagctct
     2101 aagcctttgt aaatttcttt atcaaaatta aaataaggat taagtttagc aagttcttcg
     2161 gcatctttga gtaaaaattt cgttccttct agcactgcaa tacctgcatc aactatacaa
     2221 ttatccccta aaggaattcc tgtcactgaa ttagccccta aaagacaagc cttgcctacg
     2281 cttatagcat tgccacttgt tccacttaaa acacctaaaa tcgaagctcc gccacctaca
     2341 tcagaacctt ctcctactat agcacttgaa ctaatacgcc cttcaaccat acaagctcct
     2401 gttgtacctg cattaaaatt cacataactt gcccctggca tgatggttgt tcctgctgct
     2461 aaagacgcac ccattcttac tttagaactt tctaaaattc ttgtattatc ctcagggata
     2521 atatgtgcta aaaatcttgg gaatttatca acaaaatcga tttttggata ttgattgctc
     2581 atttttaaac gcatttcatt tgctcttaaa tactcaagct cgataggctt atcatcactc
     2641 caagctacat tgcttaaaag tccaaaagct ccatttaaat tgatacttct taaaggtact
     2701 tttttagtag aaagcaaata aagttttaga taaatacttt ctacacttaa aggttcttta
     2761 tcttcaaaaa gacaaacaaa agaaaattca tcgtctttaa atttatcttt gataatcttt
     2821 aataaatcaa tattttgatg cccatcttct tctaaaaaag gtttaaaaca agaaagtgca
     2881 aaatcaatat cttctaattt caaagtttgc acaaactcac tcgcattaaa atcaatctcc
     2941 acgccccttt gcataaaagc ttcaagcatg attgccgctg agccaaaatt ttgctcatag
     3001 ttaatcaaag caaaacttgc ttgtaagatt ttatttttat ttaactgtcc tctatcaagc
     3061 cttgctatac caaaagcttt aggtttttta tagccacttt tttgctcgat ttgtttgatt
     3121 aaaagtaaaa aatcttcttt agtattaatc attttctttt ccttatccac ttaattttta
     3181 atgcgaacac gcactttttc cattcatcac aggttgtata gcagaattat ccgcaccacc
     3241 ttcattgtta attttttcta taaagctcca aattttttca gccgccatta aataacgctt
     3301 tgaactcaca ctttcagggt gataaaaact cacaggcttg ccttcatctc caccttctct
     3361 tactatcatt tctataggaa tttgtgctaa gacttcactt ttataagctt ttgccatatc
     3421 ctcagccgtt cctttgccaa aaatatcata ctctttaccg ttatcaggac ataaaaatcc
     3481 actcatattt tcaatcacac ccgctatagg aatgtgaagt ttattaaaca tatctaaagc
     3541 tcttttacta tcgtctaaag atacggtttg aggcgtactt acacaaactc ctgcagcaat
     3601 aggaatgctt tgtgcagaag taatttgcgc atcgcctgtt cctggaggca tatccaaaaa
     3661 caatacatca agctcaggcc aaattacatc agctaaaagt tgctcaattg ctttcatgat
     3721 catagctcca cgccacataa ggccttgacc ctcttcgatc aaaaccccca tactcatcat
     3781 ataaacacca tgagttaaaa taggctttaa tctctgccct actacttcag gctgagtttt
     3841 ggtttcacct agcattcttg gaatatttgg cccataaata tccgcgtcta aaatacctac
     3901 tctttttccc attttagcca tggaaattgc taaatttact gtagttgtag atttacccac
     3961 accacctttt ccacttgaaa ccatgatgaa attttttact tgtggagcga tattttttcc
     4021 acttcttgaa ttactttttt cttcaggaat ttttggagta atgatattaa gttcaatatt
     4081 ttttaaagcc aaactcgata aagcttcaat agtattttta cgaatttcat tagctacttc
     4141 aggatttgct gaaacgattt ctatatcaat gaatacacca tcatcttgaa ttttaatatc
     4201 ttttacaaag ttaaaactca ctatatcctt ttcaaaacca ggatatttta cagtttttaa
     4261 tttctctaaa atttgttctt tcatattttt tccttgtctt ttaaaaaaat caattttact
     4321 aataaaatga taaaatttag ctttttataa gtgtataata tggtaacatt ataaaaacca
     4381 acaatattaa aaagaggaat gaaaaaatga gtgaaatgag cctcattatg ttagcagctg
     4441 gaaattctac tcgttttaat acaaaggtaa aaaaacaatt tttacgactt ggaaatgacc
     4501 ctctttggct ttatgcaaca aaaaatttaa gctcttttta tccttttaaa aaaatagttg
     4561 ttacctctag taatatcact tatatgaaaa aatttaccaa aaactatgaa ttcatagaag
     4621 gtggtgatac cagagcagaa tccttaaaaa aagccttaga gctcatagat agcgaatttg
     4681 ttatggtaag tgatgtagca agggtattgg tgagtaaaaa tttgtttgat cgtttgattg
     4741 aaaatttaga taaagcagat tgtattaccc ctgctttaaa agttgcagat acaacacttt
     4801 ttgacaatga agccttgcaa agagaaaaaa tcaaactcat tcaaaccccg caaatttcta
     4861 aaaccaaatt gcttaaaaaa gccttggatc aaaacctaga atttacagat gatagcacag
     4921 ctatagctgc aatgggtgga aaaatttggt ttgttgaagg tgaagaaaat gcaagaaaac
     4981 taacctttaa agaagatctt aaaaaacttg atttgcctac acctagcttt gaaattttta
     5041 ctggcaatgg ttttgatgtg catgaatttg gagagaatcg ccctttgctt ttagcaggag
     5101 tgcaaattca tcctactatg gggcttaaag cacacagcga tggagatgtt ttagctcact
     5161 ctttaaccga tgcgatttta ggtgctgcag gacttggaga tataggagag ctttatcctg
     5221 atactgatat gaaatttaaa aatgccaact ccatggagct tttaaaacaa gcttatgata
     5281 aagtcagaga aataggtttt gaactcatta atatagacat ttgcgtcatg gcacaaagcc
     5341 ctaaacttaa agactttaaa caagctatgc aaagcaatat agctcatact ttagatttag
     5401 atgaatttag aatcaatgtt aaagccacaa caacggaaaa attgggtttt attggaagaa
     5461 aagaaggtat ggcggtgctt agtagtgtaa atttaaaata ttttgattgg acaagattat
     5521 gaaagtttta attattgaaa atgaaattta tctagcgcaa agcattagca ttaaactaag
     5581 tgatgctgga tatagctgtg aaattattaa ctcgtttgat gaatacaatg gtgaaaaata
     5641 ctatgacatt atactgcttt ctacaaatac taataatttt ctaaaagccg taggtcagtt
     5701 taaacatagt attattattt tgcttatttc ttatataagt acagatacag tttcaaatcc
     5761 tttgaaatta ggtgctagtg attatattca aaaacccttt atgatagaag agctgattag
     5821 aaaaataaag cattatcagg attttagaaa actttcaatc cttaataaag cttatcaaag
     5881 ctatatcaaa tcaagattag aaacaatcaa aattccagag tataattata aaaaattaaa
     5941 acttccattg atattaaaat ccaacaagca aagcagtgct gatgcttttg tttttaatta
     6001 tgcaaatgaa tgtgacatta ctctttcttt tattgattta acatctacaa attcagttga
     6061 aaaagttatg aaacttccca cagaaaacaa tcttttattt ttgagtaatt ttcaagcatt
     6121 aaaagcagca gaaaaggaaa aactcctaga ttttatacaa aacaaaaatg ttattttgca
     6181 taccaattca aatacagatg atttaaaaat aaactgcatt aatttaaatg ataatgaaaa
     6241 aaatatcaat agcaatgaaa ttttaactat agatgagtat gtaaaatatg ttattataaa
     6301 ttaccaaaat atatttcctg atactgatct ttcaaaaaaa ttaggcattt cacgtaaatc
     6361 tttatgggaa aaaaggaaga aatatgaaat cagcaagaaa aaataaaaac attatcatag
     6421 atcaaaatga atttggcatc ttatcactta ttaaagaagg tttgctaggc acttgcactc
     6481 atttaatgaa tgaaaaagaa gtcaatgaaa tcattaaatc aggaaaattt aaaggagaaa
     6541 gctttcccta tcccttaagc tttgcaccaa aaaatgccga agaagcacta aatgatataa
     6601 aatctggcga tagaatcgat ctcatgctag atgaaaaagt agtaggacat atagatttta
     6661 aaagccaatt taaaaataat aaaaattttt ctgatatttt cagtcctaac acttgctctt
     6721 tagaagacat gggaacaact tgcataagtg gaaaaataga aatttataat tctcaaattg
     6781 aaaaaataaa agaaaatttt caacaaatca aaaacaatct taatgcacaa aaaattactg
     6841 ctatagtttc aagttttgat cctttgcatc gtgcccatga aagaatgttt cgttggacta
     6901 ttgataaagc agatttagtt gtaatttttc ttgtagaatc ttttgatgta aatgggtttg
     6961 aattcgaact taaagaagca tatttgaaaa aatttattca aaactatctt ccaccggata
     7021 gaattttcat ttttccatta aaaaatatta atatttttca cgctcattta aatcctggct
     7081 tagaaagtat tatcgcaaaa agtctaggtt gtaccaaact agtagtagga caaaatcata
     7141 caggacttgg aatgttttat gatgataacc aaccaaaaac catacttgat gatttttcca
     7201 aggactatgg catagaagtg atcgttttgc ctgaatttgt attttgcgat caatgtcgca
     7261 tgattgttag cacaagatct tgccctcatg gttgtcatca ccatttgcac tataattctc
     7321 agtctttaaa agatttacta agagcgggta tcattcctcc agcaattttc atacgcaagg
     7381 aagtatctag tgttatttta acttctcttt ttccaaatag attaaaaaat atgcaaaaaa
     7441 tttataatga gctttttcca actgatggaa ttttagaata caaaaatgat gaagaatttt
     7501 atcaaaaact tttagaaatt catcaaatgt cttatatggt gtaataaaat gcaaaaatta
     7561 tttttaactt ttttttattc aggttctgta aaaaaggcaa gtgggacttt tggtactatc
     7621 gctgctttaa tacctgcttt ttttatactt aaatatctcg ggattaatac tttgttttta
     7681 ctaagcattt taatttttgt tgcaagtatt cgtgttatag atgattatga aaaaaaaaca
     7741 ggaattcacg atgacaaaca catagttatc gatgaggttg ctggagtttt tcttgcttgt
     7801 gctattgcag caagtgttga aaactcgata gtcaatttta ttttggcttt tgttttattc
     7861 agactctttg acattacaaa accttctatt attggtaaga tagataaaaa agtcaaaggc
     7921 ggactaggtg taatgcttga tgatatgtta gcaggattgt ttgctggact tttaagtgcg
     7981 gtaatttatg gatttttact taaatttaat ttagtttttt gggatataaa tttaaaagat
     8041 ttattttgaa attttgctta aattaattaa attttaaatt ttattcttat ataatttagt
     8101 ctttaatttc aaaaaaggaa aatataaatg gcaaaccata aatctgctga aaaaagagca
     8161 agacaaacta ttaaaaaaac agaaagaaat agattctata gaacaagact taaaaatata
     8221 actaaagccg taagagaagc tgcagcaaat ggaaataaaa atgctgctaa tgaagcttta
     8281 aaagtagcta ataaaagcat tcatgctatg gtaagtcgcg gtttcattaa aaaacaaact
     8341 gcttctcgcc gtgtaagccg cttagccctt ttagtaaata aaatcgcata attttctata
     8401 tagtttttaa tgttagctag caaactagat ccttttttta aacgctttga agagttaaat
     8461 tctcttctta gcagttctga tatactcaac gatatcagta aaatgactac actctctaaa
     8521 gaacaaaaaa atttagaacc tatcgtttta aaagctaaag agtatttaaa aactttagac
     8581 aatatagaag aaaataaagc tttgctaaac gatccagaac ttggggaact tgcaaaagaa
     8641 gaactaaaaa ctttagaaga attaaaaccg aaacttgaag aagagattaa aattttactt
     8701 cttcctaaag atcccaatga tgaaagaaat atttttcttg aaattcgtgc aggcacaggt
     8761 ggcgatgagg catctttatt tgtgggagat cttgtaaaag cttatgcaag atatgctgaa
     8821 aatcgcggct ataaacttga gattgtaagc tctagtgaag gaagcgtagg tggatttaaa
     8881 gaaatcatca tgcttgttaa aggaacaggg gcttattcaa gacttaaata tgaaggtgga
     8941 acgcaccgtg ttcaaagagt tcctcaaaca gaatcccaag gacgcgtgca tacttctgct
     9001 atcaccgtgg cagtaatgcc agaagttgat gatatagaaa tcgaaatcaa tccaaacgat
     9061 cttaaagttg atgttatgcg atcttcagga catggtggac aaagtgtaaa tactactgat
     9121 tcagctgttc gtatcactca tatccctaca ggtatagttg tagtcaatca agatggaaaa
     9181 agccaacaca aaaataaaga aagtgcgatg aaagttctaa aagcaaggct ttatgaaatg
     9241 caagagagtg aaagactagc aaaagaaagt gaagcaagaa aatcacaagt aggaagcgga
     9301 gatagaagcg aacgcattcg cacttacaat tttccacaaa atcgtatcag cgatcataga
     9361 ataaatctta ctttatatcg cttagatgcc attatgcaag atgggctttt tgatgaaatc
     9421 atagaacctt taatcactca tcatcaagcc caagctttac aagaacaaaa tttataagat
     9481 tttatataaa ttaatgctta tgtaggaatt tatgtggatt tccactagca cctacatgtg
     9541 caacatttcc attttctata tcataagctt gaccaaaacc ttttacaaag cgtccttttt
     9601 taaattcaag ctttactaga tgaaaatcaa gcatcttgcg tatagtttta atgcctcctt
     9661 ctcctccggt ttgtttttca aactcatcat aaatttgatc aaatctttca cctctctcta
     9721 aaaagcttgc atttactcta tagcgcaatc ttttacgaag tataacagaa acagctttac
     9781 tctcatcctc taaaaacatt atttctatat tgtttggatt tactttgatg ttgttaaaat
     9841 gttcacttac ttcacttata taaatataat ttccccattg tgtgcttaca aaaggtgcat
     9901 acgagcaaac aacttctcca tttgcattta aagttgccaa agctacagaa ttaaaactta
     9961 gcataaattc atttaattct ttttctacac cactaaaatt ttgctcgctc tttgcactca
    10021 tgcaaaggga tattatagca tctttaatcg tgttttcatc ggctttttta ggaaattcca
    10081 ctcgtaaatt ttctttatca ttgtaaacaa gatctaagcc attaaaatca acacttttta
    10141 gaaaaacatc ttgtacttgc tcaataccac caaatttttt acaaagatcg actaaatttg
    10201 atttatgatg atcattcata tgagaaataa tgctttcaaa attcattttt atcctttctt
    10261 gattttaaaa taaaatatta aaaaaaatgg tatcaattat caaattaaaa agcacttaaa
    10321 atatataaat tatctatttt aacaaaaatt tatactagat taagtta
//
LOCUS       DARBAR010000055        10314 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.055, whole genome shotgun sequence.
ACCESSION   DARBAR010000055 DARBAR010000000
VERSION     DARBAR010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10314
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.055"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..341
                     /locus_tag="SB815_001056"
     CDS             <1..341
                     /locus_tag="SB815_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEG0906792.1"
                     /translation="KSDLENVFKNTQNKNFIKLSAQKDITLLKEELQNYLNSFDSEGI
                     MVSSLDLINACKISSEAIFRAKGLLEESSLEFFAFELNLAINELARFTKDFQRDEILD
                     EMFGNFCLGK"
     gene            352..2538
                     /gene="purL"
                     /locus_tag="SB815_001057"
     CDS             352..2538
                     /gene="purL"
                     /locus_tag="SB815_001057"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEG0906793.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGDIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPMRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVMGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPTSEPKYLSEIKNYKFE
                     LKSSVQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASVIRIKENGASVA
                     MAIECNSRLNYVNSKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFSGSMVMKIQDKKVSGSLKELDYKAELALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGANLTSDFDDEKMIFDESASRAIIGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDSIELSKAELDKLYFESFKEQIQ"
     gene            2535..3305
                     /locus_tag="SB815_001058"
     CDS             2535..3305
                     /locus_tag="SB815_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HEG0906794.1"
                     /translation="MTLVLIILVVLVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            3308..4840
                     /gene="purH"
                     /locus_tag="SB815_001059"
     CDS             3308..4840
                     /gene="purH"
                     /locus_tag="SB815_001059"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEG0906795.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            4939..5667
                     /locus_tag="SB815_001060"
     CDS             4939..5667
                     /locus_tag="SB815_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906796.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     DTVSTSVFQTMRMAMNLGDPEKIKEAIEDAKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENVNGVVHLRLIRPLIADESCVACHANANVGSVIGVMDI
                     SHSLEGVQKDISKTSQSYIVIFTIALIFTLCVVLLMLKVVVGKPVLELLNHAKELAQG
                     SGNLKARISVKGQDEIALACGYIN"
     gene            5857..6531
                     /locus_tag="SB815_001061"
     CDS             5857..6531
                     /locus_tag="SB815_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002930723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG0906797.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSTVSQNENELAKKV
                     ENMVNQAGNIQKATQMMDEIADKTNLLSLNAGIEAARAGAFGRGFSVIAEDVRQLAQN
                     SEEFLGNVAQITKELLQSINEVSAELKKNAQSVQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENIQNLLSRMQENVEVSEKNEEISKILLQVADELKIVCHNLESE
                     LNQFQI"
     gene            6541..6975
                     /locus_tag="SB815_001062"
     CDS             6541..6975
                     /locus_tag="SB815_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HEG0906798.1"
                     /translation="MKKMLQIALAATFFAGCASTSLTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGTFKISNENGKLVLSNDEMKIFFK"
     gene            7074..8051
                     /locus_tag="SB815_001063"
     CDS             7074..8051
                     /locus_tag="SB815_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agamatine deiminase"
                     /protein_id="HEG0906799.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKVVS
                     EFQKVLLIAPKQSDFENFKDIKNVEFFKCDTNDTWIRDFGAIDIVENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDTKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLLELPIPKPLYYEERRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPNHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            8048..8935
                     /locus_tag="SB815_001064"
     CDS             8048..8935
                     /locus_tag="SB815_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEG0906800.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            8932..9804
                     /locus_tag="SB815_001065"
     CDS             8932..9804
                     /locus_tag="SB815_001065"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HEG0906801.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFTDLTKRFID"
     gene            complement(9816..>10314)
                     /locus_tag="SB815_001066"
     CDS             complement(9816..>10314)
                     /locus_tag="SB815_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEG0906802.1"
                     /translation="LKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSA
                     AQKNSFNHFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIW
                     GLRKDATQRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLE
                     NIQNK"
BASE COUNT         3678 a         1236 c         2046 g         3354 t
ORIGIN      
        1 ataaaagtga tttagaaaat gttttcaaaa atactcaaaa taaaaatttt atcaagctta
       61 gtgctcaaaa agacattact ttgttaaaag aagaattgca aaattatctt aattcttttg
      121 atagcgaagg tattatggta agttctttag atcttattaa tgcttgtaaa atttcaagtg
      181 aagcgatttt tagagctaag gggcttttag aggaaagttc tttagagttt tttgcttttg
      241 agcttaattt agctattaat gaacttgcaa gatttaccaa agattttcaa agagatgaaa
      301 ttttagacga aatgtttggt aatttttgtt taggaaaatg aaaggataga aatggataaa
      361 gaaaccataa aagcacataa aatcagcgat gaagaatatg cacaaatttt agaaatttta
      421 ggacgtgagc caaatttatt agaacttggg gttatttctg cgatgtggag tgagcattgc
      481 tcttataaat ccagtaaaaa atatcttaat ggttttccaa ctaaagcacc ttgggtgatt
      541 caaggtccag gtgaaaacgc aggggttatt gatatcgggc aaggtatggc agcggttttt
      601 aaagtggaaa gtcacaatca ccctagtttt atcgaacctt ttgcaggtgc ggctacagga
      661 gtagggggaa ttttgcgtga tgtttttact atgggtgcaa gagtggttgc ggggctaaat
      721 tctttaaaat ttggcgatat tcatgatgaa aaatgcggca aacatcaaaa ataccttgtt
      781 aaaggcgtgg taaatggaat ttctcattat ggaaattgca tgggtgtgcc aactataggc
      841 ggagaatgtg cttttgatga gtgttttaat ggaaatatct tagttaatgc ctttgcttta
      901 ggggtttgta aaagtgaaga tatcttttat gctaaggctg aaggtgtagg aaatcctgtg
      961 atttatgtgg gttcaaaaac agggcgtgat ggacttggtg gagcggttat ggcaagtgat
     1021 agcttcaatg aagaaagcaa atctttgcgt cctacagtgc aaattggcga tcctttcagt
     1081 gaaaaacttc ttatggaggc ttgtttagag ctttttaaaa ccgattatat tgtgggtatt
     1141 caagatatgg gtgctgcagg gcttacttca agttcttttg aaatggcagg aagaagtggc
     1201 agtggcatga aactttactt agataaaact cctatgcgtg aaagcggtat gactccttat
     1261 gagttaatgc ttagcgaatc tcaagaaaga atgcttattt gtgcgaaaaa aggctatgaa
     1321 gataaggtta tagagatttt caaaaaatgg gatttagatg ctgtggttat gggtgaagtt
     1381 accaatacag gaaaaatgga gcttttttgg catgatgagc ttgtaggact tattcctatc
     1441 gagcctttaa gtgaaaaagc gccgatttta agtcgcccta caagtgaacc aaaatattta
     1501 agtgaaatta aaaattataa atttgagtta aaatcaagcg ttcaagagct ttttatacaa
     1561 atgcttcaaa atgaaaatat taataataaa gcttttattt atgatcaatt tgattcaagt
     1621 gtgcaaacca ataccataaa agctgatgga agattaggtg ctagtgttat tcgtatcaaa
     1681 gaaaatggtg caagtgtggc tatggctata gaatgtaatt cacgcttaaa ttatgtaaat
     1741 tctaaaatag gagcagcttt agcagtagct tctgcaggaa gaaaagttgc ttgtacgggg
     1801 gctaaacctt tggcaataag cgattgttta aattatggaa atccgcaaaa tcctgaagtg
     1861 atgtggcaat tcgcacaagg ttgcgaaggt attaaagaag cttgtaaaga gttaaatacc
     1921 ccagtagtaa gcggcaatgt ttcgctttat aatgaaactg aaggcgtaag tatttatcca
     1981 agtcctacta tagtaagtgt aggggtttta gaagatgcaa ataaaaccct aaaagctagt
     2041 tttgaaaaag aaaatttaag cgtttatctt ttgggtgaaa gtttaggaga atttagtgga
     2101 tctatggtaa tgaaaatcca agataaaaaa gtatcaggaa gtcttaaaga gcttgattat
     2161 aaagctgaac ttgcactttg ggatttgctt tataaagcca atcaaaattc tttacttgag
     2221 tgtgccaata gcgtaggaat agggggtatt gctatgactt tggcaaaaat gtttgctatt
     2281 tctagtgtgg gtgcaaattt aacaagtgat tttgatgatg aaaaaatgat ttttgatgag
     2341 agtgcaagtc gtgctataat agggcttagt aaagaaaatg aagaagcttt tttaaattta
     2401 gctaaagaat ttggagtaaa agcttataaa ttaggtgtga gtacaagcca aaaacatttt
     2461 aaacttgata gcattgagtt aagcaaggct gaacttgata agctttattt tgaaagtttt
     2521 aaagagcaaa tccaatgact ttagttttaa ttatactcgt tgttttggtg ttttactggt
     2581 attataaaac ttggggaaaa caggattttt taaactcagc tacaagagga gccaaaggct
     2641 ttgctaaggg ttttgctcgt ggggttatgg aagaaagaat ggatgagttt aaaaggcgta
     2701 tgaattacta tgttatcgca cttttggcaa aaattgcaaa aagcgatggc agggtaagtg
     2761 aaaatgaagc tgaaatgatc aaagatcttt tagatgcaaa tgccaaagat gaaaaagaaa
     2821 gagctttttt aaaagcaagt tttaacgaac ataaagaaaa tttaagcgat gctttttatg
     2881 tggcaaaaga ttttttaaaa gaagtgcctt tgcctaaaaa tgagcgtttt aatgtcttgc
     2941 gtgtgcttgt ttttatggct ttaatcgatg cagattttaa tgctaaaaag cgtgaaattt
     3001 tagagcaaat cgctaaagcc tttgatatag caaaaagcga actagacgct tttatagcaa
     3061 gtctttcaaa tttaaaaagt actaaaaaag aattaagtct tgatgaagct tttgctattt
     3121 tagaacttcc aaataatgcg gatttaaatg cggtaaaaaa acaataccgc aatttggcaa
     3181 aaaaatacca tcctgatatt ttaaatgcaa acaatgttag cgaagaagag cttaaaatcg
     3241 gcgtagagaa atttcaaaaa atcaacgaag cttatgaaaa agttaaaaaa catttagaaa
     3301 ggtaaaaatg agagcattac ttagtgtgag tgataaagaa ggcatagtag aatttggcaa
     3361 agagcttgaa aatttaggtt ttgagattct ttcaactggg gggactttta agcttttaaa
     3421 agaaaatgga ataaaagtta tagaagtgag tgattttaca aagagtcctg agctttttga
     3481 agggcgtgtg aagactttgc accctaagat tcacggtggg attttgcata aaagaagcga
     3541 tgaaaatcat atcaaacaag caaaagaaaa tgaaatttta ggcattgatc tagtttgtgt
     3601 aaatttatat ccttttaaaa aaactaccat tatgagcgat gattttgatg aaattataga
     3661 aaatatcgac ataggcggac ctgcgatgat aagaagtgca gcaaagaact ataaagatgt
     3721 gatggtgctt tgcgatccac ttgattatga aaaagtgatt gagactttaa aaaaaggtca
     3781 aaatgatgag aattttcgtt taaatttgat gataaaagct tatgagcata cagcaaatta
     3841 cgatgcttat attgcaaatt atatgaatga acgctttaac ggaggttttg gagcgagtaa
     3901 atttatagta ggacaaaaag tatttgatac aaaatatgga gaaaatccac atcaaaaagg
     3961 ggctttatac gagtttgatg ccttttttag cgcaaatttc aaagccctta aaggcgaagc
     4021 aagttttaac aatctaaccg atattaacgc agctttaaat ttagctagta gtttcgataa
     4081 agctccagct attgctatag taaaacatgg aaatccttgc ggttttgcta taaaagaaaa
     4141 tttagtacaa agctatatac atgctttaaa atgcgatagc gtcagtgctt atggaggagt
     4201 ggttgcaatc aatggaactc ttgatgaggc tttagcaaat aaaatcaatg aaatttatgt
     4261 agaagtaatc attgcagcca atgtagatga aaaagcttta gccgtgtttg aaggtaaaaa
     4321 acgcattaaa attttcactc aagaaagtcc gtttttaatc cgcagttttg ataaatatga
     4381 ttttaaacat attgatgggg gttttgtgta tcaaaacagt gatgaagtgg gcgaagatga
     4441 gcttaaaaat gcaaagctta tgagtcaaag agaggcaagt aaggaagaat taaaagatct
     4501 tgaaatcgct atgaaaatag cagcgtttac caaatcaaac aatgttgttt atgtaaaaaa
     4561 tggcgctatg gtggctatag gtatgggtat gacaagtaga atcgatgcag caaaggcagc
     4621 aatcgctaaa gctaaagaaa tgggacttga tttgcaaggt tgcgttttag caagtgaagc
     4681 cttttttcct tttagagata gcatagatga agcaagtaaa gtaggggtta aagctatagt
     4741 agaaccaggc ggaagtataa gagatgatga agtggtaaag gcggctgatg agtatggtat
     4801 ggcgctttat tttacaggag taagacattt cttacattaa gtttaatgga atgttatgtt
     4861 ttttacacat aattcaataa aaattaaata aattatgtgt aaaatatttc cgaaaaattt
     4921 tatttttagg aaactatgat gtttaaaact ataggattta aggtttctgc tgcaattttt
     4981 gtggtgttgc ttataagttt tattgtaatg caagtgattt taaatttgga ttttaaaaat
     5041 actgccaata aaatgagcag ggcaaattta gataccgtaa gtacttctgt ttttcaaaca
     5101 atgagaatgg ctatgaattt aggagatcct gaaaaaatta aagaagccat tgaagatgca
     5161 aaaagtatag agggtattag tgatattaaa atttatcctt caaaagatac tatagatctt
     5221 tttgagatga aagcccctca aatttcaaat gataagcgta ttatagaaca attttcaaat
     5281 cctaaaattc aagctttaga agaaaatgta aatggtgttg tgcatttaag attgatacgc
     5341 cctttgattg cagatgaaag ttgtgttgct tgtcatgcaa atgctaatgt agggagtgtg
     5401 attggggtta tggatatatc acattcttta gaaggtgttc aaaaagatat aagcaaaacc
     5461 agtcaatctt atattgtaat atttactatt gctttgattt ttaccctttg tgtggttctt
     5521 ttaatgctta aagttgttgt tggaaagcct gttttagagc ttttaaatca tgctaaagaa
     5581 ttagctcaag gaagtggcaa tttaaaagct cgtatttcag ttaaaggtca agatgaaatt
     5641 gctttagctt gtggatatat caattaattt atcgaaaaaa ctcataaggc agttagcggt
     5701 gcaagtcata attcaaaaaa tgtagaaaaa caaagcaatc ttttaaattc aaatgctatt
     5761 tctttaagtg atatcagttc acaaagtcat aagcaaatag atcaaagttt taaacttggt
     5821 gcaaatgttg gcaatgaact tggagaactt gctagtttgt caaataaagc aaatagtgcc
     5881 aatgaaaaat cctttttatt attagaacaa atgcttaaat ctttgtttaa tgttgctaat
     5941 aaagtatcaa cagtatctca aaatgaaaat gaattggcta aaaaagttga aaacatggtc
     6001 aatcaagcag gtaatataca aaaagcaact caaatgatgg atgagatcgc agataaaacc
     6061 aatttactat ccctaaatgc tggcatagaa gcagctaggg ctggtgcatt tggacgaggt
     6121 ttttctgtaa ttgctgagga tgttaggcag ttggctcaga acagtgaaga atttttggga
     6181 aatgtagctc aaattacaaa agagcttttg caaagtatta atgaggttag cgcagaatta
     6241 aagaaaaatg ctcaaagtgt acaagcttta aatgatgaca ccgctttatt ggttgatgat
     6301 gctaatgagg ttaaattatg caacgaagat gctagggctt tggtaactca atgtactgaa
     6361 aaaataaaaa tttcacaaga gaatatacaa aatttacttt ctcgtatgca agaaaatgtt
     6421 gaagtaagtg aaaagaatga agaaatttct aaaattctgc ttcaagttgc agatgagtta
     6481 aaaatagtgt gtcataatct tgaaagcgaa cttaaccaat ttcaaattta aaggaataaa
     6541 atgaaaaaaa tgcttcaaat tgctttagct gcaacttttt ttgcgggttg tgctagtact
     6601 tctcttactt catctacttc taaaggtaat aatgaacttg tgcaaaatca gcttttcaaa
     6661 atagaaaaaa ttatagtaaa tggcaaaact tttgatccaa aaaacgcaga ggaaagtcca
     6721 aatatcagtt ttgaaaataa taaattttat ggttattcag gatgcaatcg tttttttggt
     6781 tcttatcaaa ctaaggcgga tactttacaa atcgaaggtg atcgcgtagc ttcaactcaa
     6841 atgctttgtc acccaatgga tgtaatggat tttgaaaatt ctttcctttc aaatttcaaa
     6901 ggaactttta aaatttcaaa tgaaaatgga aaacttgttt taagcaatga tgaaatgaaa
     6961 atctttttta aataatgccc taaagcctcg aaatatcgag gcaatcttct taaatttgac
     7021 aaaagtctaa aaaatgatac aattataatt ttattatcaa aaaaggtagt taaatgataa
     7081 aatcaattcc tgaatggagt gagcaagaat acctcatgct ttctttaccc catgaaaaaa
     7141 gcgattggaa tccctactta gaggaaattt tgcaaagtta taaagaattt gtaaaagtgg
     7201 taagtgaatt tcaaaaagtt ttacttatag ctcctaaaca gagtgatttt gaaaatttta
     7261 aagatataaa aaatgtagag ttttttaaat gtgataccaa tgatacttgg atacgcgatt
     7321 ttggagctat agatatagta gaaaatggtc gtttaaaagc tcttgatttt acttttaatg
     7381 cttggggaaa taaatttcaa agcgagcttg ataatgctgt aaattctaag ctttttaaag
     7441 aaaaatttaa agaggagctt aaaaaggttg attttatttt agaaggagga agtattgact
     7501 ttaatggaga gggtgtgatg cttacaagct ctcattgtct tttaaatgaa aatagaaatt
     7561 ctcatctaaa caaaactcaa attgatacaa aattaaaaga aatttttggt ttaaagcaaa
     7621 ttatttggct agaaaatggt ttcataaaag gtgatgatac ggatcatcat atcgatacct
     7681 tagcaagatt tatagataaa aataccatag cgcattgtat ttgtgaagat gaagaggatg
     7741 agcattattt gcctttgcaa aaaatgaaag aagagcttaa aaaaacaggc tttgatttat
     7801 tagaacttcc tatacctaag cctttatact atgaagaaag aagattagga gcgacttatg
     7861 cgaattttgt ttttataaat aatgctttaa ttgtgccttt ttacaaggat aaaaatgatg
     7921 aaatcatagc taaaagactt tctaaagctt tacctaatca taaaattata ggagtagatg
     7981 caagagtgtt tttacgacaa aacggttctt tgcattgttc ttgtcaaaat cgtttcaaag
     8041 gtttaagatg agtttgcaaa aaaaagcaac tcttgtagca agtttatgtg ctattgtttt
     8101 agccttggtt aaatttatag taggcttaac aagtggttct gttgcagtac tttcaagtgc
     8161 gattgattct ttaatggatt ttgctatttc tgcttttaat tttttggctc ttaaaaaaag
     8221 ctcacaaaag gcgaatgaaa attataattt tggtttttct aaaattgaag ctttaatggg
     8281 tttgttagaa ggtgttttta tagttggcgt ggggattttt attttttatg agagtatttt
     8341 aaagatttat tataaagaag aaattaaaga tttaaattca agcatctatg tgatgatttt
     8401 tgctttaatt atgacttttt ttcttgtact ttttttaaat tatgtagcta aaaaaaccaa
     8461 aagtttgatt atagaaagtg atgctttgca ttacaaaaca gattgcttaa ccaatgcttg
     8521 tactttaggg gctttggttt tgatttattt tacaaattta catattattg atgctatttt
     8581 tgggatagtg atcagtcttt atacggcatt ttctgctttt aaaatcatta aaaaagcttt
     8641 agctttttta atggatgagg ctttacctaa ggaacaagtg gataaaattt gtactttgat
     8701 ttctaataat cctgaaataa tttcctatca tgaattaaag acgcgtaaaa ctccaagttg
     8761 taattattta agcgtgcatt tggttttttg ccctataatt tcgcttttaa atgcgcataa
     8821 aatttcagat gaaatagaag aaggtgtgcg taagatgttt gaaaatgaaa aatgggatat
     8881 acaaattcat ttagatcctt atgatgatgc agaacaagaa aggcaaagac aatgaaaatc
     8941 gctttaatac aacaaaaatt tcatttaaat aaagaacaaa ctataaaaaa aacttgcgaa
     9001 tttatagaag aagcctctaa acaaggagct gagcttgttt gcttaggaga acttcatcaa
     9061 agtgagtatt tttgtcaaag tgaaaatgtg gatttttttg actatgctaa tgattatgaa
     9121 aaagatgtga aattttgggc aaatatagct agaaaaaatc aaatagtgct tattgcttca
     9181 ttgtttgaaa aacgaagtgc cggactttat cataatactg cagtggtttt tgaaaaagat
     9241 ggttctatag caggcaaata tcgcaaaatg cacatacccg atgatccttg tttttatgaa
     9301 aaattttatt ttactcctgg agatttgggt tttgaaccta taaatacaag tttaggtaag
     9361 cttggagtgc ttatttgttg ggatcagtgg tatcctgaag cagcaagaat tatggcttta
     9421 aaaggagctg agattcttat ttatcccacg gcaattggtt ggtttgataa ggataaagat
     9481 gaagaaaaac aaagacagct caatgcttgg cttggcgtac aaaaaggaca tgctatagct
     9541 aatggtttat atgtagtagc tatcaataga gtaggttttg aaaaagatgt aagcggggta
     9601 gaagagggca ttagattttg gggaaattct tttgtttttg gccctcaagg tgaagaactt
     9661 tgtcttttag attctcaaaa cgaatgtgta aaaatcatag aaatagataa aaaaagaagt
     9721 gaaaatgtgc gtcgttggtg gccttttttg cgagatagac gcatagaata ttttacagat
     9781 ttaactaaaa gatttattga ttaaatcaat aaatcttatt tgttttgtat attttcaaga
     9841 tagcttttta tttgctcttt ttcttgttcg tttaaattta taaaacttat ttctttaagt
     9901 cttgataaaa gcaaattatc ttctaaaatt tcattttttc ctatttctaa agaagtgatg
     9961 acgctagaac ttatgagaag tctttgggtt gcatcttttc ttaagcccca tatattatgt
    10021 atggcaatat tattatctgt aatttgccct gcataaagca taatatgtcc aggtaaataa
    10081 agtaaactaa gataagcttt cccaaagcgg tttaaaaaat cttttttttg agaattacta
    10141 agagtgctta tatcaaaatg attaaaagaa tttttttgtg cagctgaatt tcttggtaga
    10201 taaagtccaa aagctgaaaa gatatcacga gttagtaaag aacaatctct ttcaaaatta
    10261 taaccgcccc agccataagg caaatttaaa acttgtgaaa gttgattttt taaa
//
LOCUS       DARBAR010000056        10049 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.056, whole genome shotgun sequence.
ACCESSION   DARBAR010000056 DARBAR010000000
VERSION     DARBAR010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10049)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10049)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10049
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.056"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            237..1643
                     /gene="aspA"
                     /locus_tag="SB815_001067"
     CDS             237..1643
                     /gene="aspA"
                     /locus_tag="SB815_001067"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEG0906803.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1659..2996
                     /locus_tag="SB815_001068"
     CDS             1659..2996
                     /locus_tag="SB815_001068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG0906804.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFVACMLAAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     VLHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVSRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            3104..4465
                     /locus_tag="SB815_001069"
     CDS             3104..4465
                     /locus_tag="SB815_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0906805.1"
                     /translation="MKIKVGLIFSGIACLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAA
                     KFIGTTLLNDNIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRVLMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVAIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            4475..4843
                     /locus_tag="SB815_001070"
     CDS             4475..4843
                     /locus_tag="SB815_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HEG0906806.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDTRANDFRLEIKAKN"
     gene            4867..5490
                     /gene="lpoB"
                     /locus_tag="SB815_001071"
     CDS             4867..5490
                     /gene="lpoB"
                     /locus_tag="SB815_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HEG0906807.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5573..6910
                     /locus_tag="SB815_001072"
     CDS             5573..6910
                     /locus_tag="SB815_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906808.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVVAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6920..8122
                     /locus_tag="SB815_001073"
     CDS             6920..8122
                     /locus_tag="SB815_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906809.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGSADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNMLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANETALK
                     QIANRIAGDILNAIYPLKVASVENNEVIFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKFSYAKITEGSVKVGDICRPLSNTGSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8281..8589
                     /gene="rplU"
                     /locus_tag="SB815_001074"
     CDS             8281..8589
                     /gene="rplU"
                     /locus_tag="SB815_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEG0906810.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8600..8854
                     /gene="rpmA"
                     /locus_tag="SB815_001075"
     CDS             8600..8854
                     /gene="rpmA"
                     /locus_tag="SB815_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEG0906811.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8961..10013
                     /gene="obgE"
                     /locus_tag="SB815_001076"
     CDS             8961..10013
                     /gene="obgE"
                     /locus_tag="SB815_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEG0906812.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVNEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVRLGEEFAEQIALNINELDNYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNKKNLTI"
BASE COUNT         3672 a         1339 c         1879 g         3159 t
ORIGIN      
        1 attctaacaa aaaagcttgc aaaaatatat taattttttt tgaagtaaat aaaatttttt
       61 atattaataa aaattaaata taaagacata ataggatata aaaatactta atttatcgta
      121 tttgaaagca gtttacttat taatcaatta ttaactaaaa atgcgatatc attattttat
      181 gatttaaatc aaaaattttt gatttaaaat taaaatactt ttatgaaagg ttcaaaatgg
      241 gaacaagaaa agaacatgat tttattgggg aattggaaat ctctgatgag gtttattatg
      301 gagtgcaaac ttttagagct gttgaaaatt ttgatatttc tcatgataga ttaaaagatt
      361 ttcctcgctt tgttagggct ttggctagag taaaaaaagc tgcagctatg gcaaatcatg
      421 aattaggtct tttggataaa aatatccaag atgcgattat taaagcgtgt gataaaattt
      481 tagaaggtgg gtattatgat caatttgtag tagatatgat ccaaggaggt gctggaacaa
      541 gtacaaatat gaatgctaat gaagttatag caaacatagg acttgaactt atgggtcata
      601 aaaaaggtga ataccaatat cttcatccaa atgatcatgt taatttaagc caaagtacta
      661 atgatgctta tcctacagct ttacaccttg ccttgcatga ttatttaagt gatttggcaa
      721 aagctatgga acatctaaaa aaagcttatg agagaaaagc tgaagaattt aaagatgttc
      781 ttaaaatggg tagaacccaa ctgcaagatg ctgtacctat gactttaggt cgtgaattta
      841 aaacttttgc cgtaatgata ggtgaagata tacaaagagt attagaagct agaaaattga
      901 ttttagagat caatttgggt ggaactgcta ttggaacagg aattaattct catcctgatt
      961 atccgaaggt tgtagaaaga aaaataagag aagtgacagg ttttgaatat actgtggctg
     1021 aggatttaat cgaggcgact caagatacgg gagcttatgt acaaatttca ggtgttttaa
     1081 aacgtgttgc aacaaaactt tctaaagtat gtaatgactt aagactttta agtagtggtc
     1141 caaaatgtgg tcttaatgag attaatcttc caaaaatgca accaggtagt tctatcatgc
     1201 caggtaaggt aaatcctgtt attcctgaag tagttaatca agtttgttat tttgttattg
     1261 gagcagacgt aactgtaact tttgcttgtg agggtggaca attacaactt aatgtttttg
     1321 aaccagttgt agcatatagc ttatttaatt ctgttgtaat gctagaaaaa gcaatgtata
     1381 ctttagctga taaatgtata gatggtatta ccgcaaatga aaaaatttgt tcagactttg
     1441 tctataattc agtaggtata gtaacagctt taaatcctta tattggttat gaaaattcag
     1501 cttctatagc caaagaggca atgaacactg gaaaaagagt ggctgatatt gcgcttgaaa
     1561 gagggctttt aagcaaagaa caaattgatg aaattttaac tccatcaaat atgctaaatc
     1621 ctcacatgga agctaaaaaa tagcacttag gatttaatat ggatataatg ataattttgc
     1681 aagtaatcgt ccttcttggg gcgattttta tcggtattcg cctaggtggt attgctatag
     1741 gttatgctgg aggattaggt gtagttatat tagggcttgt tttaggtatg aaacctggta
     1801 atattccttg ggatgttatt ttaattattg ccgcagctat tgcagcaatt tctgctatgc
     1861 aacaagcagg tggacttgat tacatggtaa gggtgacaga aaaaatttta agatcaagtc
     1921 ctaaatttat aaattattta gctccagctt gtgggtggtt gcttacaatt ttagcaggaa
     1981 caggaaatgc ggtattttct ttaatgcctg ttgtagttga tgttgcaaaa tctcaaaaca
     2041 taaaacctag tgttccactt tcattaatgg ttgtttcttc gcaaattgga atcactgctt
     2101 ctcctgtaag tgcagctgtg gtttatatga gcggagtttt agagccactt ggatggaatt
     2161 atccaacttt aattggaatt tggattagca caacttttgt agcttgtatg cttgcagctt
     2221 ttatagtgag tttaatcact cctatggatt tgagtaagga tagtgtttat caagaacgat
     2281 taaaagcagg acttgtaaag gatgcaggag ctgttttgca tggcgaagat aaaccaggtg
     2341 ctaaactttc agtggtaatt ttcttgatca ctgttttggc agttgtactt tatgcaaccg
     2401 caatttcaag taatattaaa tggattgatc ctgttgtggt ttcaagagat gcagctatta
     2461 tgagcttttt acttactgca gcaactttga tcacttggct ttgtaaagtt gaaccaggta
     2521 aaattcttga cactagtgta tttaaaagcg gtatgactgc ttgtgtttgt gtttttggtg
     2581 tagcatggct tggaaatact tttgttgcag gacacgaagc ttctatcaaa gaagtagcag
     2641 gcgactgggt taaacaaacc cctgctatgt tagcagttgc atttttcttt gcaagtatgc
     2701 ttttatattc tcaagcagca accgcaaagg ccattgtacc tgtaattatc actgctttag
     2761 gaatttcagc agcaaatccg catgattctt atatgcttgt agcttgtttt gcagcagttt
     2821 cagcactttt tgtacttcca acttatccga ctttgttagg tgcagtgcaa atggatgata
     2881 caggaacgac tagaattggt aaatttatat ttaatcactc attctttata ccaggggttt
     2941 tagctattgc aattgctgta gcattaggct ttgtattagc tcctatgctt atttaaatca
     3001 aaccctaggt ttttctctcc tagggttaaa attttttcat tagtttttaa gtatatacta
     3061 cgctataata ttcattttta attttcttta agaaaggaat ttaatgaaga taaaagttgg
     3121 gttgattttt tcaggtattg cttgcctttt tttaacagct tgtgttaatc aggttaaaca
     3181 aaatacaaca tttgaaaata ctttaacaca aaaatattgt ggtgatgatt ttttcaatca
     3241 aaatttagaa aaaattaaaa aaaatgatga tgtcatttat acaggattaa atgcaggttt
     3301 gattgctaga aattgtggtg attttaataa aagtaatgta ttttttgatg ctgtagaaga
     3361 atcttataaa tatgatgtgg atttagaaaa tgtaagccct aaagcagcta aatttattgg
     3421 tacaaccttg cttaatgata atatagtaga ttatgatggt tctttatatg aaagaattat
     3481 ggttaatata tataaagctc taaactatat ggaagaagat gattatgaaa atgcaagagt
     3541 tgagtttaat cgtgttttaa tgcgtcaaga taaggcaaaa gaatattttg ctaaagaaat
     3601 tgaaaaaaat cgtgctgatt tagataaggc aaaagaagat aaaaattatg ataaaaatat
     3661 gaatgaaaat tcaaaagtta tagaagcgca atatgacaat ttatttaaag aatttgatac
     3721 aacaaaaaat ttcataaatc cttatgcgac ttatcttgct tcaatatttt tctttatgga
     3781 taaagattat agaaaagctg cagatttatt tagagaagta gctattattt atccaaaaaa
     3841 caaaactatc aaaaaagagg ctaaaatttt taaagaatat gccacaaaaa taaaagtcaa
     3901 aaaagctaaa aaatatgttt ttgtagttta tgaaaatgga tttggtgtag ttaaggatga
     3961 atttgcttta accttacctt ttatagtgga taaaaaaatt attagcacaa atattgcttt
     4021 gcaaaccttg aaaaaaaggg aagcttcttt tgcaaattta aatataaatg gtcaaaatac
     4081 aaatgatttt gtagatttag acaatattgt cgctactgaa tttaaaataa atatgcctgc
     4141 aatgattgct aaagccttag ctcaaactat aattaaaacc actttaaatg tagctgttgc
     4201 aaataatgac tctacaggtg gatggctaag tcttgcaaca gcagtagcaa ctgctgcaac
     4261 caataaagct gatgtgcgtt cttggagagg tttaccaaaa agtattgcca tagcaacaat
     4321 agaaaacgac ggaaatttag aaatcaaaga tccacaaggc aatattttgt ttcaaaaatc
     4381 attggataaa aataaaaatg ctcttgtgat agtgcgttct tttgctccgt atttacccgc
     4441 aagtgttgct atcatggaaa aataaggcta aaagatgaaa aaaaatattt tatttatttt
     4501 aatgttttta cttagtgctt gtgcaccaag ttatcaaata aattcaaatc aaaatactgt
     4561 aattttaggt tcaaatttac caaaaagttt agtaaaacaa tttcaaaagc gtataaatag
     4621 caatggttat ttagaatttg aagtgatttt gcgcagtact tttgctaaag atgtaattta
     4681 taaagtagat tggttagata aagatggttt tgtgctaaga gatgttttaa atgaggacta
     4741 tcaagccctt agaattccag caggacaaga ggtaattctt cgtaaacttg catctgatac
     4801 aagagcgaat gattttagat tagaaattaa agcaaaaaat taatctcatt ttaggaagga
     4861 taaatcatga aaaaaacaaa aattttagga acagctctta ttggagcttt gctttttagt
     4921 ggttgtgcgc aaacagctta tacagatgga aaggcaagtc aggtaaaaaa aggcgatgct
     4981 ttaaccttgg gtcttgatag acaagatttt gaaagtgcag ctgaaactat gataaatagt
     5041 atgttaagcg atcctgcttt tgcaaatatt aaaccaggta caagaaaggt tattgctatt
     5101 ggtagggttg tgaatgatac cccgcaaaga atcgatactg aaaaactcac cgcaaaaatc
     5161 acttctgcat taagaaaatc aggtaaattt gttctaactt cagcagttgc tgcaggcgga
     5221 gcacttgata gcatgagtga agatgtaaga gaattaagag ataatgatga gtttaatcaa
     5281 aaaaccatag caaaaaaagg gacattggta tcgcctgatt tttctcttgc gggtaaaatt
     5341 agacaagata atgtaaaact tagcaatggt aaaactcaag tagaatactt tttcttacta
     5401 agacttactg atttaacatc aggtttagtt tattgggaag atgaacaaac tattgataaa
     5461 accggttcta gtaaatcagt tacttggtaa aataaaaatt aatttatgaa taaaattttt
     5521 tagctcaagt gtttagcttg ggcttttttt atgattttta aaaggatacg aaatgaaaaa
     5581 aatattattt atcggctctt tagttatggc aagtttactt tatgcacaag gttcccagcc
     5641 tgtagaaatt acacaacaag atataaatac tcaaaatgaa atgtctgacg caagtactaa
     5701 ggatattacc ccaaaatcaa ttgaagattt ttttgaagaa tttgcggata atttcggtat
     5761 agaatatggt ataaccaaag atggaaaaac tttttataca ggaaaaagta ctgttgctgt
     5821 aaatgatact gatccacaat ttgcacaagc tttacaaaat gcttaccaaa aagcaatgtt
     5881 aaatttgcaa agcgaattta taagagatgc ttttggaaga attgctacaa gcaagattca
     5941 aaattatgaa gcagataatt ctacgaatgc taaggaattt gatgaattgc caaaaggtga
     6001 taaggttgat caaattttaa ataaacttac acaattagct ggtgctcagc ttgataaggc
     6061 attaaaagat ttaggtatag atacaaattc tttaagcgaa gacagaaaaa agactttatt
     6121 aaagcaagaa tttcttaata aaactatgac aaatgccata ggttctatga gtggacttgt
     6181 tcctgtgcaa actatagtta cacaaagaag aggtgagtat gatgtaggtg ttgttgctgt
     6241 tatttccaat aaaactcgcc aattagcaaa agatatggca ctagcaagac agagtgctat
     6301 taagggtaaa ggcaaggcaa taagtgagta tctgccaaaa gatacaaaag gctttttaaa
     6361 tgaatatgga attcgcttag tttatgatga aaatggtgca cctattattt taagttatgg
     6421 aaactggggt tatgtagcag atcctagcaa tgctaaaaaa acaaatattt tagaagatag
     6481 agccaaagaa acagcactta ctatggctga tgctgctatt atagagttta ttaatacaaa
     6541 tttaagtctt aaagatgaaa gaacaactgg tgatacttac gaggaaatca tcaaacaaag
     6601 tattaatgtt aatgatagtt ccactcaaga acaaactcaa aacataacaa atattattga
     6661 caaagtaaat agtaaaataa aagcaagcgc aagcggtaaa attcgtggta ttcgtactct
     6721 taaaaaatgg agctatacaa gtgaaaatgg tattgaacat gtaggagctg tgagatttta
     6781 ttcttatgaa aatttagcta acacaaatga ggctttaaat tcaaagtcaa atgcaacaaa
     6841 aaatgaagct aaaaaatctt ctagcataca aagaagttct aatgttgtaa atagcatgga
     6901 tgatttttaa aggtaaaaga tgaaaataat taaaattctt tttttaggct tatttttaag
     6961 cctaagtctt aatgctaaag ttataaccac aacttcaaca aaatcaagca caggtgaagg
     7021 cacaggcttg actagggaag atgcgataaa caatgccatt atagaagcta taggaaaaat
     7081 gagtggagta agcatcaatt ctcttaagaa atctaacact agcgtttcaa ctgataattc
     7141 aggttcaaat atacaagata attacagcga gcaaatttca aaagccacca aaggtagcgc
     7201 tgatacttat gaaatcaata gtgttgaaca agatgcaaat ggtaaatata cagccaatgt
     7261 aacgattttt aaaaccacaa caacaaaaaa gtatcaagct ccaggtttaa gtgcagataa
     7321 tagaagaagt attactgttt ttgattctac tccagatgct gcaaaaagag gtataggctc
     7381 agctttgcaa caaaaaatca tttctgattt attgcaaagt cgtaaattta atgttttaga
     7441 ccgtgattct agtggctatt atgaaatgga aaaagcttta atcaaaagtg gcgacgcagc
     7501 tagcgatgaa gtttataaac ttaaaaatat gttagcaaca gattatattt tattgttttc
     7561 tatttcagga cttgaaggta aacaaaaaac aagcaattta acaggaaaaa gcaaaactga
     7621 aattgaagtt atcgtagatt atcgtgtgct tttatttgct acaagacaaa ttaaattttc
     7681 taatacttta agcatgaaag tcaatcttaa agacaatagt cttagtgcca atgaaaccgc
     7741 actcaaacaa attgcaaatc gtatagcagg agatatttta aacgcaattt atcctttgaa
     7801 agttgcaagt gttgaaaaca atgaagtaat attttctcaa agcttaaatc aaggtgatgt
     7861 ttatgaatgt tttgctcttg ggaaggttat aaaagatact tatacaaaag aaaatacagg
     7921 aagagtagaa agcaaaacag gaagtattga aatcactcgc acaagcccta aattttctta
     7981 tgcaaaaatc acagaaggta gtgtaaaagt gggcgatatt tgcagacctt taagtaatac
     8041 tggtagtgga aatggctaca ctataggtcg tgatgcaaat tatcaaaccc aagaaggcgg
     8101 cggagtaaat ctaggctttt aaatttttag agtttgattt ttctcaaact ctaaactctt
     8161 tcttaaattc atcaaaaatt aaagaaaaat tttgtaaaat cgaaatttta ttaaaccact
     8221 aaagctttta aatccgttat tacggtgctt tatggtacta ccaatttata aggaaaagca
     8281 atgtatgcta ttatcaaaca cagcggaaag caatacaaag taagtgttgg cgatgagcta
     8341 aaactagatc actttgaagc tgaaagcaaa gcaagtattg aagtaagcga agttcttgct
     8401 atcaatgata aagaattaaa ggtaggtgcg cctttcgtag caggtgcaaa agttgttttg
     8461 gaagtgatca atcacggaaa agataaaaaa gttgtgattt acaaaaaaag acgcagaaaa
     8521 gattctaaac tcaaacgcgg ttttagaaga caatttactc gcgttgtagt aaaagatatc
     8581 aaagcttaag gagtaaagaa tggcacacaa gaaaggtcaa ggttcaactc aaaataaccg
     8641 cgattccata ggtcgtcgtt taggtgttaa aaaatttggt ggcgagtttg ttagagctgg
     8701 aaatatcatc atccgccaaa gaggaactgc aactcatgca ggtaacaatg taggcatggg
     8761 aaaagatcat actatctttg ctctaattga tggttttgta aaattcgaaa gaaaagacaa
     8821 agatagaaaa aaagtttctg tatatcctgc ataagttttt aggacgcttt ttagcgtctt
     8881 gaaaacttta aatttataaa tttaacttct tttatttact caaatttagc tttataaatt
     8941 taaagtcaaa ggcaatttaa atgtttattg atagtgttaa aattacttta gcttcaggcg
     9001 atggtggcaa aggtgctgta agttttcgcc gtgaaaaaca tgttccactt ggtggccctg
     9061 atggaggaga tggtggaaat ggtggtgata ttattttcgt atgtgataat aatacccaca
     9121 ctcttgtaaa tttcaaaggc aaaagagaat tacgcgcgca aaatggtgct ggtggaatgg
     9181 gacgcaataa aaatggcaaa aagggtgaaa atttagaact tatagtgccc gaaggaacgc
     9241 aagttatcga tgcacaaacc aatgaaattt tacttgatct taccaaagaa ggacaaagag
     9301 agcttttttt aaaaggtgga aaaggtggac ttggcaacac ccattttaaa cacgccacca
     9361 atcaacgccc cgattacgca caacctggta taaaaggaga aagtcgctta gtcagacttg
     9421 aacttaaact tattgccgat gtagggcttg tgggctttcc aaatgtggga aaatctactc
     9481 ttataagcgt tgtttcaaat gcaaaacctg aaattgcaaa ttatgaattt accaccctta
     9541 ctccaaaact tggacttgta gatgtaaatg agtataattc ctttgttatg gctgatattc
     9601 cagggattat cgaaggagca agtgggggta aaggcttagg acttgccttt ttaaagcaca
     9661 tagaaagaac gagcttttta cttttcgtgc tagatcctat gaggcaaatg cctttaaaag
     9721 aacaatttat agtactaaga aaagaacttg aaaaattttc caatgaactt tttgggcgta
     9781 aatttggcat catgatttca aaaagtgata gtgttcgttt aggagaggaa tttgctgagc
     9841 aaattgcttt aaacattaat gagttagaca attatctcaa agaaataaat aatccacaaa
     9901 gctttttaat caaagtctca agccttgaaa aaacaggact taaagaactt aaattcatgc
     9961 ttttagaaga aattaaaact ttaagaaata acaaaaaaaa tttaacaatc taggaagtgt
    10021 tttatattaa aaatttcaaa cactcccta
//
LOCUS       DARBAR010000057         9692 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.057, whole genome shotgun sequence.
ACCESSION   DARBAR010000057 DARBAR010000000
VERSION     DARBAR010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9692)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9692)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9692
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.057"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..1137)
                     /locus_tag="SB815_001077"
     CDS             complement(<1..1137)
                     /locus_tag="SB815_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906813.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQEGNENSLEQ
                     LSYIFNNTTYASEFGFRINEKGFFDKDLNKIANIPESYDINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKK
                     MSFDLYLYINGVDKKTSTQDKLSVFFQQYINYQKDMDLREFANSSSIFQIYIDQNRND
                     FDALKKQYQNQSQDTQRLEEANQLRSSSIENFLDRRQKQANINKI"
     gene            1293..1484
                     /gene="rpmI"
                     /locus_tag="SB815_001078"
     CDS             1293..1484
                     /gene="rpmI"
                     /locus_tag="SB815_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEG0906814.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRGLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            1578..1931
                     /gene="rplT"
                     /locus_tag="SB815_001079"
     CDS             1578..1931
                     /gene="rplT"
                     /locus_tag="SB815_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEG0906815.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(1984..2796)
                     /locus_tag="SB815_001080"
     CDS             complement(1984..2796)
                     /locus_tag="SB815_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002878296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEG0906816.1"
                     /translation="MGIAKSLVAIFFYEVENFNDFKPRYLKTFIQKYSDFKYYYLNIR
                     AQKLEMTNEINKIILNQLKQNTSEIDKNTSIFKEIFEELENIRRSLTTISESFTNFTN
                     YLEYNLYQSEEKMNLEKEVQSSLKNIDQLNSILDLISGIAEQTILLSLNAGIEAARAG
                     KLGRGFAVVADEVRKLSENTQMGLGEMEGAIKLVIQTIQSIAKSSNSSTQEMNFIRDK
                     TNEFSKIISNLINSGKEISDKLEQRSNVSEDFEKNVNQLKCYEDVLAKLNQY"
     gene            complement(2800..3162)
                     /locus_tag="SB815_001081"
                     /pseudo
     CDS             complement(2800..3162)
                     /locus_tag="SB815_001081"
                     /inference="COORDINATES: protein motif:HMM:NF021926.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FIST C-terminal domain-containing protein"
     gene            complement(3087..3641)
                     /locus_tag="SB815_001082"
     CDS             complement(3087..3641)
                     /locus_tag="SB815_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEG0906817.1"
                     /translation="MILFSEDMIENLCTNKIKLFSDIKDYTERKKLIEKEVLFINIPF
                     EAHCINTLYYLIYDGLSQSESSLLELLYKHNPYPCALVGGGSSGNMDFSGAFIFYNGE
                     ILKNQALSIHVQFKPKYRFNLMKSQNFNPQSNITFTILDVSLYDKTVRELINKKPFRL
                     KLYVIILTALLKNLKIKCKNILLL"
     gene            4123..4980
                     /gene="cheP"
                     /locus_tag="SB815_001083"
     CDS             4123..4980
                     /gene="cheP"
                     /locus_tag="SB815_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HEG0906818.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKED"
     gene            5008..5487
                     /gene="cheQ"
                     /locus_tag="SB815_001084"
     CDS             5008..5487
                     /gene="cheQ"
                     /locus_tag="SB815_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HEG0906819.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNAEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(5456..6766)
                     /locus_tag="SB815_001085"
     CDS             complement(5456..6766)
                     /locus_tag="SB815_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0906820.1"
                     /translation="MSKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVLLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIGVIKSCVFFSVFFGIASLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGLYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(6769..6924)
                     /locus_tag="SB815_001086"
     CDS             complement(6769..6924)
                     /locus_tag="SB815_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEG0906821.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYPQNHHKNYNYDDDDYEYDDDNND
                     DDFYEMD"
     gene            7017..7490
                     /gene="moaC"
                     /locus_tag="SB815_001087"
     CDS             7017..7490
                     /gene="moaC"
                     /locus_tag="SB815_001087"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEG0906822.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITLRIATASGIIYMSQEAFDVIK
                     NNTAKKGPVLQTAIVAAIMGVKKTSEIIPMCHPLMLSKVETNIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDIVLESKEGGKSGKFVRS"
     gene            7468..7731
                     /locus_tag="SB815_001088"
     CDS             7468..7731
                     /locus_tag="SB815_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HEG0906823.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHVKASEIFEEILGQREY
                     KFKHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            7721..8881
                     /locus_tag="SB815_001089"
     CDS             7721..8881
                     /locus_tag="SB815_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906824.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLAYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYEYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
     gene            complement(8900..9658)
                     /gene="xth"
                     /locus_tag="SB815_001090"
     CDS             complement(8900..9658)
                     /gene="xth"
                     /locus_tag="SB815_001090"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEG0906825.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMQFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
BASE COUNT         3458 a         1312 c         1391 g         3531 t
ORIGIN      
        1 aattttattt atatttgctt gtttttgacg acgatctaaa aaattttcta tagagctaga
       61 acgtagttga tttgcttctt ctaatctttg cgtatcttgg ctttggtttt gatattgttt
      121 tttaagagca tcaaaatcat tgcgattttg atcgatataa atttgaaata ttgaacttga
      181 atttgcaaat tctcttaaat ccatatcttt ttggtagtta atatattgtt gaaaaaatac
      241 agatagtttg tcttgagtgc ttgttttttt atctacgcca ttaatataaa gataaagatc
      301 aaaactcatc tttttttcat tttctttttt gatgtaatct tctatatctg tttcgccctt
      361 gagaattttt tgtaaatttt gatgagagct tagttctaaa gtggcaggtt tcataaaaaa
      421 gttaaattct ttttcgtttt gagtttttat atcatggtag ataaaattca ttaaaagacc
      481 agattttgat acttctgcat ttttagttaa ataaggtttt aaaatttcat tagaagaagt
      541 gttttctatg gctttatcaa aatgaaaatt agttatttta ttatctaaca ttaaagtatt
      601 taaatttgtg atattgctta atgccaaatc aatttcttct tgattgttgt aaattcttga
      661 aatttggcct aaaaattctc cattatctgt tgaaaaacct gatgatagtt ttgaaataag
      721 atcgcgactt aaataagcat tatcatcttg taaaaattct gaatttatag attttaatga
      781 actatgatag ctatttaaaa gataaggtag atcaatttta ttgtagttta aattttcgtc
      841 ttgttttgcg agttcttttg ctatgcttct aacactttta atgttgatat cataagattc
      901 tggtatattt gcaattttat ttaaatcttt atcaaaaaaa cctttttcat tgattctaaa
      961 tccaaattca ctagcataag tggtattatt aaaaatataa cttaattgtt ctaagctatt
     1021 ttcatttcct tcttgatcca aagctttact atctttaatc aaatttagag cagagctatt
     1081 ctgcaaagga ttagataagg ttaaattttg atatggattt gccgaattta tagtcatttt
     1141 aaatctttcc aaaatattgc tgatttttta taagcaaaag gtgtgccaag ttttttaaaa
     1201 attaaattca gtcaaaaatt agaaaaaatt tgatagtatt tagcttttct tttaatttga
     1261 aaaataaaaa tttatctaaa taaggaaagc gtatgccaaa gatgaaaagc gttaaaagcg
     1321 cagttaaacg cttcaaagta ggtaaaaata aaatcaaaag aggctcagct tttagaagtc
     1381 atattttgac taaaaaacct gcaaaaagaa tgcgtggtct tcgcacagct aaatatgtgc
     1441 atagcacaaa tgtaaaagct gttgaaaaaa tgctaggaat ttaagttttt gactaaaagt
     1501 cattcaaact cccctctgag ataaaatttc aagggtaagc tccaaatttg gacgccactt
     1561 tatgaaagga aataaaaatg gcaagagtaa aaacaggtgt tgttagacgc cgcagacata
     1621 aaaaagtttt aaaattagcg cgtggttttt atagtggacg ccgcaaacat tttagaaaag
     1681 caaaagaaca attagaaaga agtctagtct atgcttatcg tgatagacgc cgcaaaaaaa
     1741 gagacttccg tcgtctttgg attgtgcgta tcaatgctgc ttgcagactc aatgatttaa
     1801 gttattcaag atttatcaat ggtcttaaaa aagcaggcat tgaacttgat agaaaaattc
     1861 tagcagattt agctatgaat gatgctgctg cttttgcaaa aattgcagag gctgcaaaaa
     1921 aagcactttg attttttagt ataagaattt caagattttt gattcttgaa attcttaatt
     1981 ttttcagtat tgatttaatt tagctagaac atcttcataa catttgagtt gatttacatt
     2041 tttttcaaaa tcttcgctga cattgcttct ttgttccaat ttatctgaaa tttctttacc
     2101 tgaatttata agatttgaaa tgattttgga aaattcatta gttttatctc ttataaaatt
     2161 catttcttga gtactagaat tggaactttt tgcaatggat tgtatggtct gaataactaa
     2221 tttgatagct ccttccattt cacctagacc catttgggta ttttctgaaa gttttctaac
     2281 ttcatcagct acaactgcaa atccacgacc aagttttcca gctctagcag cttctatacc
     2341 tgcatttaaa gataaaagga tagtttgttc agcaatccct gaaataagat ctaaaatact
     2401 atttaattga tctatatttt tcaaagagga ttgtacttct ttttctaaat tcattttttc
     2461 ttcgctttgg taaaggttgt attctaggta gttagtgaaa ttggtaaaac tttcactaat
     2521 agttgtaaga cttcttctta tattttcaag ttcttcaaaa atttctttaa atatacttgt
     2581 atttttatca atttctgatg tattttgttt gagttgattt aagattattt tattaatctc
     2641 atttgtcatt tctagttttt gagctcttat attaagataa tagtatttaa aatcgctgta
     2701 tttttgtatg aaagttttta aatatctagg tttgaaatca ttaaaatttt caacttcata
     2761 aaaaaatatt gccactaaac tttttgcaat tcccactcca taaatttctc caaaactaga
     2821 aaaaccaact ataggaaaat cattaaaatg gatttgattt aaatgttctt tgttgtgaag
     2881 ccttcttaag atacaatcgt taaaaattgc tcctagtggt tttggtttat taagagaaaa
     2941 tttttcataa tcttttttta tagcttcaat aaaatttgtt tttttaagca agcttaattc
     3001 ctgagcgctt tctatatcac aataactaaa taatgtttta tttgggttga tttccatagg
     3061 ggaaataaga tagtcttctc caatttttaa agcaaaagta tattcttgca ttttattttt
     3121 aagttcttca aaagtgcagt taaaataatt acataaagct tcaaccggaa aggtttttta
     3181 ttaatcaatt cgcgtacggt tttatcatat aagcttacat caagtatggt aaaggtgata
     3241 ttgctttgag gattaaaatt ttgagacttc attaaattaa aacggtattt aggtttaaat
     3301 tgaacatgta tgcttaaagc ttgatttttt aatatttctc cattataaaa tataaatgct
     3361 ccgctaaagt ccatgtttcc gctagaccca ccccctacta aagcacaagg ataggggttg
     3421 tgtttgtaca aaagttctaa aagagaactt tcgctttgac ttaaaccatc ataaattaaa
     3481 taatacaaag tatttatgca gtgtgcttca aaaggtatat ttataaataa aacttctttt
     3541 tctatcagtt tttttctttc tgtataatct tttatatcac taaaaagctt gattttattt
     3601 gtgcaaagat tttctatcat atcttcacta aaaagtatca agcttattcc ttggatattt
     3661 tgtttataag gactgttttc aatgtttgag ttagaatcaa ggttgcataa taaatcagta
     3721 gcactgctta agatgatatc acattgctca tttatagaat tttgaatctt atttcctatg
     3781 atcgctagat taagttgatt gacacaaagc ctataattaa ttttggcttg atgtttattt
     3841 tttttaattt ttcttcaagt tcattttatt gaagatatag agcttctaaa acttttttac
     3901 ttcttctttt tttgttgagc ttttattttt aaaattaaaa aaacatcaat tttactccat
     3961 taaaactatt ttttaattac tagttaacta aatcaagaca ccataaattc gacatttatt
     4021 tgtaattttt attatacctt aagtcataaa aaatgcaata agtaaattaa aatttagata
     4081 taattgcaaa ttataataat attaattaag gataaattaa atatgattgg agatatgaat
     4141 gagcttttat taaaaagcgt tgaagtattg ccacctttac ctgatactgt aagtaagtta
     4201 agaaaatatg tgagcgaggc taattcaaat atagaaacta tgaaagttgc tgaaatcatt
     4261 tcaagcgatc cgttgatgac ggctaagctt ttgcaattag caaattctcc ttattatggt
     4321 tttacaagag aaattacaac cataaatcaa gtgattactt tattaggcgt tggtaatatc
     4381 atcaatatag ttatggctga ctccattaga gataatttta aaatagacgt ttcaccttat
     4441 ggtttaaata ctcaaaattt tttaaaaacg tgcaatgaag aggcaacttt tatcgcaaat
     4501 tggcttaatg atgaagataa aaaactttct catcttttag ttccttgtgc aatgctttta
     4561 aggcttggta ttgttatttt ttcaaatttt cttatacaaa atcataagga taaggatttt
     4621 ttagcttttt taaataaaaa tgaaaatctt gctttagcgg agaatgaatt tttaggcgta
     4681 gatcatattt ctttcttggg atttttgtta catcgttgga attttgatga tgttttgatt
     4741 gaaagtatat gttttgttcg cactcctcat gctgctcgcg aaaaagtgaa aaaatccgct
     4801 tatgctttag caataacaga tcatcttttt gctccgcatg atggttcttc tccatttaac
     4861 gcaaaagctg cagttgcttt acttaaagag gcaaaaactc aaggaattaa ttttgattta
     4921 aacaatcttt tatctaagct tcctaacaaa gctaaggaaa atttaaacaa agaagattaa
     4981 agagcctttt taaggctcta aattgtagtg atgaaaagtt taatcttacc tcctaatgaa
     5041 tttttagatc actatatttt aaacgctgaa tttcatcgtt ttgctggaat ttcaaaaaat
     5101 gcttataaat tttggaaaaa tgcagaaata ggtagatatc aaggaacaag aattatattt
     5161 ttgcatagaa attgcatttt agaaaaacat cagcaagctt taaggcaatg tagtggttta
     5221 aatggttttg tattggcaag tgctttttgt tcttttactg gattagctcc ctctcattta
     5281 gtggaaaaaa ataattcttc tatttataaa cttttagagc ttaaggaaat ttgtgggatt
     5341 aaatttgtta atttaaaaaa attttatgat tttttagggc taaattatca tcagcatatt
     5401 tatatagaaa aatgccattt ttttagccca gctccttttg aaaagcgtat taaaatcact
     5461 gagagtatgt gcgttgggta ttattaagat aagaaaaaat aaatgcacat agcaaagcta
     5521 taatagccaa aaagaaaaca taaagtccca aagaaaaacg ccaaaaatta cttaaattat
     5581 ttaaggcaaa actatgcaag aaaaaagcaa gttgcggagt taaacctcca gctatagcat
     5641 aagcaatatt atatgaaaaa gaaagtcctg aaaatttaat ttttgcatca aatacttcac
     5701 tcattattaa agggcaaaaa ttcatcactc cgctaaaaaa acatacaagt aaatataagc
     5761 aagctactag gttaaaatca gcattttgtc tatataaagt attaaaataa agcaagcttg
     5821 caattccaaa aaaaacacta aaaaatacac aagatttaat aacgcctatt ttatccgcta
     5881 aaattccact tataatacac cctaggcaaa taagcaaaat tccacctatt tgaagatagg
     5941 tttgtataga agtattaatt tgaagtattt ttgccatata actaggcata agcaaaatca
     6001 ttacaacaat acaacctgtc aaaacccaag taatcatcat agaaagaaca attcccattt
     6061 tagctttttt aaacacttct tttaaaggaa atttttctaa agccttgtct tttttcattt
     6121 gttcaaaaac aggagtttct cttaaaaatt ttctcaaata agcagaaata atcccaaaaa
     6181 ttccacctaa aaagaatgga attctccaag cccattcatg aagttcttct tgggtataaa
     6241 ttttattcat aattaaaaaa accaaactac ctaataaaat tccacctaca accgaagcgg
     6301 ttaaaattcc caaataagtt cttttttgac cttgtggtgc gtgttcgtat acaaaaaccc
     6361 aagctccagg gagttccccg cctatagcta taccttgaca aatgcgtata aaaactaaaa
     6421 gcacaataca aagaaaacct atactttcat aatttggaat aaaagctaga gtaaaagttg
     6481 gaataaccat taacaaaata ctaatcataa acattctttt gcgtccaaat ttatctccaa
     6541 aatgtgccag tatcacaccc cctaaaggac gtgctaaata tccagctgca aatattccat
     6601 aagtattaaa catttgccaa aaactactta aatcttttgg aaaaaagttt gttgaaatat
     6661 aatttgcaaa aaatacaaaa ataataaaat cataaaattc taaagttcca cctaatgatg
     6721 aaagtcctaa aacttttata tctttttggt taagggtttt gctcattctt aatccatctc
     6781 ataaaaatca tcatcattgt tatcatcatc gtattcataa tcatcatcat cgtaattata
     6841 atttttatgg tgattttgtg gatattcttc atcttcgttt tcataatcat cgtaatttaa
     6901 atcttcttca tcttcataag ccattgtttt ctccttaaat aaaaatacaa agcttatttt
     6961 atcttaaatt tgtttggttt tgctataatt tttataattt tttaaaaggt gaatttatga
     7021 aattaagtca tttagatgaa aaaaatcatc ctaaaatggt agatgtaagc gataaaaata
     7081 ttactttaag aatagccaca gctagtggta taatatatat gagtcaagaa gcttttgatg
     7141 taattaaaaa caataccgca aaaaaaggtc ctgttcttca aacagctatt gttgcggcta
     7201 taatgggggt taaaaaaaca agtgaaatta ttcctatgtg ccatcctttg atgctttcta
     7261 aagttgaaac taatattgtg gaatttgtta aagaatgtgc atttaagctt attgtaacag
     7321 ttaagtgtga aggtaaaaca ggtgttgaaa tggaagcttt aagtggagtt agtataggac
     7381 ttttaactat atatgatatg atcaaggcta tagataaatc aatgagaatt acggatatag
     7441 tgcttgaaag caaagaagga ggtaaaagtg gtaaatttgt gcgatcttaa aaaagaacct
     7501 cagatcaatt atcctacttt ttgggattat aaggtgattt ttgaggtgca tgttaaggca
     7561 agtgaaattt ttgaagaaat tttaggtcaa agagaatata aatttaaaca ttcgaattca
     7621 agtgcgagtg gaaaatatca aagttatttg ttaaatgttt atgttgatag caaaaaagat
     7681 cgtttggata tatttgataa attaaaagct aaagcaaaat ttgtacttta agaaagaagg
     7741 aaaaatgaaa aatactttaa ttatttttga aaattcttta tcaaatctcg gtaaagatga
     7801 agcaagtgat ttacttgaag acttgagttt taatcttgcg tataagcaaa tttcacataa
     7861 tcctcatgaa acaaaaaaag ttttaaattc tcttttggtt gaatttttaa ctattttgaa
     7921 aaaacttgat ttttttgatg atgaaaatgt tacaaaggtt atcaaagctt tggttaaggc
     7981 gagtattgta gatgctcaaa attcacttta tgagtatatt agcgaagctg aattattaaa
     8041 caaacagatt gaaaatcaaa agaatttgat taaaaatcaa atcagcgata atttttttga
     8101 attcgagaat attttacaag aatgttcttt ttgtgatgaa tttagtggtg gtttaaatga
     8161 tgctatttta tttgatatag aaatgcttgg aattttaaaa gaaaccgctg aaagtgcttt
     8221 tttaactaca ttagaaaagg ctgaagatat agaacttaca agtagtgaaa tagctaaaaa
     8281 tctcgtatat aatgccattt gtgaagctca ttttgaaaaa gaaagaattt taaaaatttc
     8341 aagtattatt ttaaataccg cttttgaaat agctaatgaa tctatggctt atgcaaaaga
     8401 tctttgttta ggcgtgatta aaggcacaag ggatggtatt gttttggcaa tggaaaaatt
     8461 taaagcttca ttaacttatg caaattttga agaagatgtt agtttaaaaa gcaaagaact
     8521 aataggtata gaagatgatt ttattgctct tttaaaaaaa gagattcaat tacaaaatga
     8581 tccttgtaag agtatagttg agaatttgct agaacatgaa cttgataatc tttttgctaa
     8641 atttagacgt cttgcaggtg aaagcagaga gcaactaata ttagttttaa atgatattaa
     8701 gaaaaatcca aagattaatg attttaacaa acttactcaa agaaaattaa atcgttttaa
     8761 acaagaaatt tttgaattag aaaaaattgc tagtgaaaaa tacaaagatt taaattccaa
     8821 aaaagctaaa aagctcggtg taagactttg ggaaaaagca aaaaaattcg ttaaaaaata
     8881 atatcccatt tttgggatat taaatatcta tttctatacc tacaggtgcg tgatcagagc
     8941 caaaaatatc atctcttatg aaagcgtttt taagtttatc ttttaaaccc tttgaaatga
     9001 aaaaataatc aatcctccag cctacatttc tttctcttgc tttcattcta tagctccacc
     9061 acgagtattt ttctttgatt tcgccattaa tttctctaaa agtatctata aaaccaagct
     9121 ttagcaaatc atcaatccaa gctctttcta taggtaaaaa acctgaagtg ttggcattgg
     9181 cttttggatg agtaagatcg atttctttat gagcggtatt gacatcaccg caaatgataa
     9241 tttcaaatcc atcctttaaa agcttatcca aatacactaa aaaatctgca taaaattgca
     9301 tcttaaaatt taaacgctct tcatcttttt gaccatttgg aaaatagata ttaaaaagtg
     9361 caatattttt aaagcggtgt tctaaaaccc taccttcttc atcatcaaaa aattcgcatt
     9421 tttttacttc gctattaaaa ttacaaagac tcattacccc agaatacccc gctcttttag
     9481 cagaattaaa atacatgtgt ttaaaaggat attcataaat ttttttagga aatttatctt
     9541 catgtgcttt gatttcttga aaacctataa aatcaatttg ttcttgtgct atccaatcaa
     9601 gtgcattttt atcacaaata gctcttaagc cattgacatt ccatgaaagt agtttcatta
     9661 ttttccttaa aattttcatt aaaagtgtaa at
//
LOCUS       DARBAR010000058         9659 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.058, whole genome shotgun sequence.
ACCESSION   DARBAR010000058 DARBAR010000000
VERSION     DARBAR010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9659)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9659)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9659
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.058"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            70..1452
                     /locus_tag="SB815_001091"
     CDS             70..1452
                     /locus_tag="SB815_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEG0906826.1"
                     /translation="MVVLLIVCGLYYSFLTRFVQFRMLSSVFKILTEKNEGHAKEHIS
                     PFQALMISTASRVGIGNIAGISLALATGGAGALFWMWVMAFFGGASAFAESTLAQVYK
                     SKDDTGGFKGGPAYYIKKALGSHFFGAFFAFILIITYAYGFNGLQSQTMTSSFKVYYD
                     MFNPNAAVDFASSSWPMIIGIVLTIFGAWMFFSHHTKIGKISSLIVPFMALAYVLLAV
                     IAVLMNFDKIPSVIHMILQSAFDFKAIFGGFAGSALVIGIKRGLFSNEAGMGSAPNAA
                     AAALTSHPAKQGVIQAFSVLIDVVVCTSSGFLVLFSMAYLGLGENKIDGGMPLVQEAM
                     REYYGSFGIHFITIAIVLFAITSLIGNYYYAQANVKYLTNSKFVMNLFRITAVAMIFI
                     GSQMNLKLAWNLADLTMAFMATTNIISLLLLGGIVNKVLKDFNTQQKSGIDPKFNASK
                     LGIKNAECWD"
     gene            complement(1480..2208)
                     /locus_tag="SB815_001092"
     CDS             complement(1480..2208)
                     /locus_tag="SB815_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG0906827.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(2201..2944)
                     /locus_tag="SB815_001093"
     CDS             complement(2201..2944)
                     /locus_tag="SB815_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG0906828.1"
                     /translation="MNQKNIRIFVFFVIIILWGYFSFPIEILKIQDPSGVASYGYTEN
                     AKAYLKSYLITLLLTACAVIIGVIIGFSLAILRFSKFKTLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPI
                     IFTGLVYYVSVKIFSYFAKKLELRMNKND"
     gene            3027..3206
                     /locus_tag="SB815_001094"
     CDS             3027..3206
                     /locus_tag="SB815_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906829.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNHQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            3199..3768
                     /locus_tag="SB815_001095"
     CDS             3199..3768
                     /locus_tag="SB815_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEG0906830.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAKELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(3798..4163)
                     /locus_tag="SB815_001096"
     CDS             complement(3798..4163)
                     /locus_tag="SB815_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEG0906831.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKYFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            4286..5278
                     /gene="pheS"
                     /locus_tag="SB815_001097"
     CDS             4286..5278
                     /gene="pheS"
                     /locus_tag="SB815_001097"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEG0906832.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            5275..7596
                     /locus_tag="SB815_001098"
     CDS             5275..7596
                     /locus_tag="SB815_001098"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEG0906833.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMSNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIGLKEEIQTNLLLSLRLAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIEGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNGEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     AVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
     gene            7593..8879
                     /gene="aroA"
                     /locus_tag="SB815_001099"
     CDS             7593..8879
                     /gene="aroA"
                     /locus_tag="SB815_001099"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEG0906834.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            8869..>9659
                     /locus_tag="SB815_001100"
     CDS             8869..>9659
                     /locus_tag="SB815_001100"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEG0906835.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWI"
BASE COUNT         3362 a         1226 c         1679 g         3392 t
ORIGIN      
        1 atgctagatt ttgccaataa agcgtctgat attatagcta ataagattgt cccaaataca
       61 gacattatta tggtagtttt acttattgtt tgtgggcttt attatagttt tttaactcgc
      121 tttgttcagt ttcgtatgtt gagttctgta tttaaaattc ttacagaaaa aaacgaagga
      181 cacgctaaag aacatatttc accttttcaa gcattaatga tctcaactgc ttctagagtt
      241 ggtataggaa atattgctgg aatttctttg gcattggcta caggtggagc tggtgcttta
      301 ttttggatgt gggttatggc attttttggt ggtgcctcag catttgctga aagtacctta
      361 gctcaagttt acaaatcaaa agatgataca ggcgggttta aaggtggtcc agcttattat
      421 ataaaaaaag ccttaggctc acattttttt ggagcttttt ttgcttttat tcttattatt
      481 acttatgctt atggatttaa tggacttcaa agtcaaacaa tgacttcgtc ttttaaagtt
      541 tattatgata tgtttaatcc aaatgctgct gtagattttg catcaagttc ttggccaatg
      601 attattggta ttgttttaac tatttttggt gcatggatgt ttttttctca ccatactaaa
      661 ataggtaaaa ttagttcttt aattgttcct tttatggctt tagcttatgt tttacttgcc
      721 gtgattgctg ttttaatgaa ttttgataaa attccttctg tgattcatat gattttacaa
      781 agtgcttttg attttaaagc gatttttggt ggttttgctg gttctgcttt ggttataggg
      841 attaaaagag gacttttttc aaatgaagcg ggtatgggct cggcacctaa tgcagctgca
      901 gcagctttga caagtcatcc agctaaacaa ggtgttatac aagccttttc agttttaatt
      961 gatgttgttg tttgtacaag ttctggattt ttagttcttt tttctatggc atatttagga
     1021 cttggagaaa ataaaattga tggtggaatg cctttagttc aagaagctat gcgtgagtat
     1081 tacggtagct ttggaatcca ttttattact atagctattg ttctttttgc aataacttct
     1141 ttaataggaa attattatta tgctcaagct aatgttaaat atttaacaaa ttccaaattt
     1201 gtaatgaatt tgtttagaat tacagctgtg gctatgattt ttataggctc gcaaatgaat
     1261 ttaaaacttg cttggaattt ggctgatttg actatggctt tcatggcaac gacaaatatt
     1321 atatctttat tgcttttagg tggtatagta aataaagttt taaaagattt taatacgcaa
     1381 caaaaatctg gtatagatcc taaatttaat gctagcaaac ttggaattaa aaacgctgaa
     1441 tgttgggatt aaaattcata agccttagtg gcttatgaat taatgattta aaaccttgtt
     1501 taaaaattct ctcaatcttt cattgctagg attttcaaat acttctttag ggcttgcatc
     1561 aacagcaatt tttcctttat ccataaaaaa tatacgattg gcaacatttc tagcaaagcc
     1621 catttcatga gttactacaa gcatagttaa accttctttt gcaacatctt tcataatgct
     1681 tagaacctcg cctatcattt caggatctag agctgaagta ggttcatcaa ataaaataac
     1741 atcaggattc atcatcaagc ttctagcaat agctatgcgt tgtttttgtc caccagagag
     1801 cttatggggc attatatttt ctttgtctgc taaacccacc ttagcaagaa gtaattttgc
     1861 tttttttatg gcttcttctt gacttaaaat tcctgtttta attggtgtta aacataaatt
     1921 ttccataaca tttttattag caaaaagatt aaaatgctga aataccatgc taactttttg
     1981 cctgatctta ttaatatcaa tttctttatc aagtatgttt tgcttattga ttaaaatttc
     2041 cccactatca gctagttcta agcgattgat gcagcgtaaa aatgtacttt ttccgcctcc
     2101 acttggacct atgatagcta ttacatcgcc ttttgagatt gtagtgttaa tattttttaa
     2161 aacttctaat tctccatatt ttttttgtaa atttttaact tcaatcattt ttattcatcc
     2221 taagttcaag tttttttgca aaataactaa aaatttttac acttacataa taaacaagtc
     2281 cagtgaaaat aataggcttt ggattgtaaa gtacggcttg caagctttga ctttgcatgg
     2341 taatatcaat aacactaata aatcctacaa cagaagtttc cttaaataaa gaaataaatt
     2401 cattagctaa tgcaggtaga atgtttttag tagcctgagg aagaataatt tctttcattg
     2461 aagttttgta atcaagtccc attgctcttg cagcttccat ttgtccttta tctacactat
     2521 taatgccact tcttacaatt tctgctatat aagccgagct attaagtcct agtgcaagaa
     2581 tggctgcata aaggttgtct ataaaagtaa aaattacaaa agcaaaaatc atcaattgta
     2641 aaattaccgg tgttcctcgt ataatgtcta tatattcatc tataataaaa ttaagtgttt
     2701 taaatttaga gaagcgtaaa atagctaagc taaaaccaat aatcactccg ataataacag
     2761 cacaagcagt taataaaagc gtaataagat aactttttaa ataagctttt gcattttctg
     2821 tatagccata gcttgcaact ccactaggat cttgaatttt taatatttct atcgggaaag
     2881 aaaaatagcc ccataaaata ataataacaa aaaaaacaaa aattcttata tttttctgat
     2941 tcaatttgta aaccttttca gagaaattat ttaaaaaaag attttataga aatatctttg
     3001 aattttctct aaagatttaa aaaaatgtgt tagaatttcc caaaaataag gttgtattta
     3061 tggaaatttt agatttcatt ctaatagtta tttttgtgtt tttaatgatt gttttggtta
     3121 taggtttcaa tcatcaaatg atgcaaaaaa acaaagaaag agaagaaaga tttaaaaaat
     3181 ataaaaaagg agaacaaaat gagtaaaaaa gtattaattc cattggctca aggttttgaa
     3241 gaagctgaat ttataggaat tgcggatgtt ttaaaacgag caaaagaatt aaatccagat
     3301 ttggaagttg ttatagcttc gttaaacagt gagttattgg taaaaggtgc taatagcatt
     3361 agtataaaag cagattgttc tatagaggat gttgatatag aaaatttaga tgctattgct
     3421 ttggcgggtg gctttgaagg tatgatgaat cttaagaatt caaatgttat tttaaatatc
     3481 attaaacaac ttcatagcaa aaataaaatt gttgccgcaa tctgtgcttc tcctatagtt
     3541 ttaaatgaag caggtgtttt agagggcgag tttgcttgtt atcctagttg tgaagttgga
     3601 cttaatggaa atcgtgttaa caaggctgta gttgtaaata aaaatgttat aacttcagca
     3661 ggtccagcta cggcaattct ttttggttta gaactagcta aaaagttatg cggtgatgaa
     3721 atttatcaaa aattatacga gggaatgttg ctacctttga caaaatagtt taaatggtag
     3781 tttttctacc atttaaatta aaataaagct tgaggatttt cttttttagt tttttcctta
     3841 ggcagttcaa aacctccaag catatgaaaa tgcaaatgaa aaacttcttg tccactattt
     3901 tttccacagt ttgttaccaa gcgatatcca cttttatcta cacctaaaag aacagctaat
     3961 tcttgtatga aacttgtcat tttggccata agttcaggat caaattcttg aaagtcttta
     4021 aaatattttt tagggattat aagtatatgt atgggtgctt tgggtgcaat atcatgaaat
     4081 gctagaaaat cgtcactttc aagcacttta ttgcatggaa gtttaccttc aactatgagt
     4141 tcaaaaattg ttttttcttg cattatttat ccttttttat tgttggtttg atacaattat
     4201 atctttaaag tttggttttt atgctgaatt taaaatagtt tttaatagaa ttagaacttg
     4261 aaatatttta tttaaggtaa gaaaattgca aaattttata gaacagattc aaaaatgtga
     4321 gaatttaaat gatttggaag ccattaggat ttccgttctt ggaaaaaaag gtattttaac
     4381 agaaggcttt acaaagctta aagagttaga agatgaggcg aaaaaagaat ttgctgctaa
     4441 attaaatgca caaaaagaaa tatttaatga ggcttattta gccaaattta aagatttgga
     4501 aaatcttgct ttagaagaaa gaatgaaaca agatgcttta aattttaact attttgatga
     4561 aagtattaca acaggtgcct tgcatcctgt tatgagcacc atggataaaa tcatagaata
     4621 ttttatagct ttgaatttta gcatagaaaa agggccttta atagaagatg actttcataa
     4681 ttttgaagcg ttaaatttac ctaaatctca ccccgcaaga gatatgcaag atacctttta
     4741 ttttgatgat aaaaggcttt taagaacaca aacttcgcca gtgcaaatac ggacaatgct
     4801 tgcacaaaaa cctcctatta ggatgatagc ccctggtgct gtatttagaa gagattttga
     4861 tattacgcat actcctatgt ttcatcaagt tgaaggcctt gtggtggaag aagggcaaaa
     4921 ggttagcttt gcaaatttaa aaagtgtatt ggaagatttt ttgcgttata tgtttggaga
     4981 tgtgaaagtt cgttttcgtc caagtttttt cccatttaca gaaccttctg ctgaagttga
     5041 tatttcttgt gtattttgca aaggaaaggg ttgtagagtt tgcaaacata caggttggct
     5101 tgaagtttta ggatgtggaa tagttgatcc taatgtttat aattttgttg gttatgaaaa
     5161 tgtaagtggt tatgcttttg gattgggagt agaacgtttt gcaatgcttt tgcatcaaat
     5221 tccagattta agatctttat ttgaaggtga tttgagatta ttggagcagt ttagatgata
     5281 attactaaaa gttggttgaa tgattggtta gaacttgaag aaataagttc agataaaata
     5341 gctaaaactt taaactctat aggtatagaa gttgataggg ttggcgcttt aaaggctcca
     5401 gataaagttg ttgtaggcta tgttaaggaa aaaattaaac atgaaaattc agataaatta
     5461 agcatttgtc aagttgatat cggaagtgaa accttgcaaa ttgtctgcgg tgctgcgaat
     5521 gttgatgcag gacaatttgt agctgttgca actaaaggtg ctatcatgtc aaacggtatg
     5581 gaaataaaag aagcaaaatt gcgaggagtg gattcttgtg gtatgctttg ttctagttta
     5641 gaactgggtt ttgaaaaaat caatgaagga attatgcttt tagatgagag tatagggaaa
     5701 ttagaacttg ggagaccttt aaatacttat gaaattttta atgatgagct aatagaagtg
     5761 gaacttactc ctaatagggg tgattgttta agtatttatg gtatagctcg tgatttagcc
     5821 gcagctttaa atttaaattt aaaagaacca aaaccattta aagaaagtga aaatgtttta
     5881 ggtatcggta gaattttgcg cttagcagct gagaaagaac ttaatggact ttataattat
     5941 cgagccatag ggctaaaaga agaaattcaa acaaatttat tgcttagttt aagacttgct
     6001 caaattgaag gtttgggaaa aaattccata gaaaatttat taaattatgc aacgcattca
     6061 actggtgttc tttttaatgc ttatgattta agtagttttt ctgaaaaaga tgaagaattt
     6121 accattaatt taagcaagca agtgcatgga gaaacaaaag tatcttacaa agataaactt
     6181 ttaagcttta gcggaatttt ccaaaataat gaaagtagat gtaaagatga ttctaaaata
     6241 attattattg aggctaatta taccgatcca ttggtaattg cagatgctaa aatatatcat
     6301 aaagatcaag atgaaaaaat gctttataga agttttaggg gaagtgaacc taaattaaat
     6361 ttaggaatgg attttttgct tggtattttt gagcagattc caaatcttgt tatttatagt
     6421 tcttctcaac aaattttaac tgacaaagaa ttaccaatca taccaataag tattgaaggt
     6481 attagcgata taataggaca aaatgttgat aaagatgaag tattaaaaat attaaagaaa
     6541 ttaggttttg agctcatact ttcaggtgaa gggcttataa atgttaaagc acctttacat
     6601 cgtcctgata ttaaaaattt atcagatatt tgcgaggaag ttgtaagaat tataggtatt
     6661 gataatattg cttccaaggg tttagaattt atagaaaaaa atcgtttaaa ttctgcatat
     6721 aaaaattata ttgagttttt aaatttaaga aaaagagcag tagctagtgg ttattttgaa
     6781 agcttacatt atgttttgga taatggagaa gaacttaaaa gattaggttt tgactctgtt
     6841 aaattaaaac taatcaatcc aattacagca gaacttaata ctttaagaac aaccctttta
     6901 aatcatttgt taaatgcagc aagtttaaat gcaaaaaatt ctaaaaaaat tattaaactt
     6961 tttgaattag gggctgtttt caatgttaat aatcaagaat taaatcgtat tgcatttatc
     7021 cattctggct taaaagaaga agctaaaatt tccaacaagg ccaaacctga atcggtgcaa
     7081 ttttatgatt ttcttttaga tattaaaaat attataggtg attttaaact aaaatcatca
     7141 aaatataata ttttaagccc ttatgaacaa gcagatattt atctatcgga tattaaagta
     7201 ggttttatag gccgtttgca tttaaaaata gaaaatgaga gagatttacc aaaaacatat
     7261 atttgcgaac ttgatttaga tttaatcagg caagatttta aaatagctaa gccttactcc
     7321 aaattcccag ctatcactag agatcttagc gtgttaatac ctaaaggttt tgaatacaat
     7381 cagattaaaa attgtatcga agaattgaat ttagaaatac ttgaaaattt tcgtttagtt
     7441 gatatttata gtgatgaaaa ccttaaagaa ttttatagca ttactataag tttttctttt
     7501 agggatataa ataaaactct agaagataat caagtgaatg aatgtatgga taaaatttta
     7561 aatactctta aaaatttggg tcttgattta agatgaaaat ttacaaattg caaacccctg
     7621 taaatgctat acttgaaaat atagcagcag ataaaagcat atctcatcgt tttgctatat
     7681 tttcgctttt aacacaagaa gaaaataagg ctcaaaatta tctcttagct caagatactt
     7741 taaacactct tgaaattata aaaaatcttg gagctaaaat tgaacaaaaa gattcttgcg
     7801 tcaaaattat accccctaaa gaaattttat ctccaaattg tattttagac tgtggaaatt
     7861 caggaactgc tatgcgtttg atgataggat ttttagcagg aatttctggt ttttttgttt
     7921 taagtggaga taagtattta aacaatcgtc ctatgagaag gataagcaaa ccacttactc
     7981 aaataggcgc tagaatttat ggaagaaatg aggcaaattt agctccactt tgtatagaag
     8041 gtcaaaaatt aaaagctttt aattttaaaa gcgaaatttc ttcggctcaa gttaaaacag
     8101 ctatgatttt atctgctttt agggctgata atgtatgcac ttttagtgaa atttctctta
     8161 gtcgaaatca tagtgaaaac atgctaaagg ctatgaaagc tccaataagg gttagtaatg
     8221 atggcttaag tcttgaaata aatcctttaa aaaaaccttt aaaagctcaa aatataatca
     8281 ttcctaatga tccttcttcg gctttttatt ttgttttagc agctattatt ttacctaaat
     8341 ctcaaattat tttaaaaaat attttgctta atcctactcg tatagaggcg tataaaattt
     8401 tgcaaaaaat gggtgccaaa cttgaaatga caataactca aaatgatttt gaaactattg
     8461 gtgagatcag ggtggagtct agcaagctta atggcataga agttaaagat aatatcgctt
     8521 ggttaataga tgaagcgcct gctttggcta tagcttttgc tttggctaag ggtaaatcta
     8581 gtttaataaa tgctaaagaa ttacgcgtta aagaaagcga taggattgct gtgatggttg
     8641 aaaatctaaa gctttgtggt gttgaagcta gagaacttga tgatggtttt gaaatagaag
     8701 gtggatgcga actaaaatct tcaaaaatta aaagctatgg agatcaccgt attgctatga
     8761 gttttgctat tttaggtttg ctttgtggaa tcgagattga tgatagtgat tgtataaaaa
     8821 cttcttttcc aaattttata gagattttat caaatttagg agctaggatt gattattgaa
     8881 ttagcaaaaa actatggttt ttgttttggt gttaaaagag ctattaaaaa agcagaacaa
     8941 ataaaagatg ctgcaactat aggccctctt attcacaata acgaagaaat ttctcgtttg
     9001 caaaaaaatt ttaatgtcaa aactttggaa aatatacaag ctttaagtaa tgaaaaaaag
     9061 gctattataa gaactcatgg tattacaaag caagatttag aagaattgag aaaaaaagat
     9121 atagaaattt ttgatgccac ttgtcctttt gttacaaaac cacaacaaat ttgcgagcaa
     9181 atgagtaagg agggttatga agttgttatt tttggagatg aaaatcatcc cgaagttaaa
     9241 ggagtcaaaa gttatgtaag tacaaaagct tatgtagttt tggataaaaa agaacttcaa
     9301 aatataaaac ttcctaataa aatagctgta gtaagccaaa caactaagaa gcctgagcat
     9361 tttatggaga tagtaaattt tttaatactt aaaaccaaag aagtaagagt ttttaacact
     9421 atatgtgatg caacctttaa aaatcaagat gccattaaag aactctcgct taaaagtgat
     9481 gttatggttg ttgtaggggg taaaaactca gccaatacaa aacaactttt tttgattgca
     9541 aaaaccaatt gtgaagatag ctatctaatt gaaaccgaag aagagttaaa aaaagaatgg
     9601 tttttagata aaaaacattg tggcattagt gcaggtgcta gtactcctga ttggattat
//
LOCUS       DARBAR010000059         9561 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.059, whole genome shotgun sequence.
ACCESSION   DARBAR010000059 DARBAR010000000
VERSION     DARBAR010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9561)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9561)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9561
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.059"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..413
                     /gene="maf"
                     /locus_tag="SB815_001101"
     CDS             <1..413
                     /gene="maf"
                     /locus_tag="SB815_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HEG0906836.1"
                     /translation="LEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAY
                     EMLALQNGKYASILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAG
                     CIMCEGFHQNFITQQVGNLSTALGLDIQTLKAYL"
     gene            410..2341
                     /locus_tag="SB815_001102"
     CDS             410..2341
                     /locus_tag="SB815_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEG0906837.1"
                     /translation="MKILKYIFSFFTLLFITGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTIARKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(2369..4942)
                     /locus_tag="SB815_001103"
     CDS             complement(2369..4942)
                     /locus_tag="SB815_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG0906838.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDS
                     TSILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKMDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASNAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(5054..5344)
                     /locus_tag="SB815_001104"
     CDS             complement(5054..5344)
                     /locus_tag="SB815_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HEG0906839.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAVEENDIQSIEELNKAIDMFMK"
     gene            5462..6796
                     /locus_tag="SB815_001105"
     CDS             5462..6796
                     /locus_tag="SB815_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEG0906840.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            6798..7508
                     /locus_tag="SB815_001106"
     CDS             6798..7508
                     /locus_tag="SB815_001106"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEG0906841.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVEIISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            7517..7762
                     /gene="purS"
                     /locus_tag="SB815_001107"
     CDS             7517..7762
                     /gene="purS"
                     /locus_tag="SB815_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEG0906842.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELVIEKE"
     gene            7764..8435
                     /gene="purQ"
                     /locus_tag="SB815_001108"
     CDS             7764..8435
                     /gene="purQ"
                     /locus_tag="SB815_001108"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HEG0906843.1"
                     /translation="MKVAIIRFPGTNCEFDTAYAFEKLGVKTQIVWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQNLRVVSNDNAFLKNFKKDEIINLPIAHGEGNYYADETTLKELQDKDL
                     IILKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDVGLKMLKGFLLENF
                     INFNF"
     gene            8407..>9561
                     /locus_tag="SB815_001109"
     CDS             8407..>9561
                     /locus_tag="SB815_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906844.1"
                     /translation="MKILLTLIFSIVVLFGRGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENIKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLFNKDFSHLVASSLEIKKVKASYFDDANIIMMIELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYALWFLAVLFGVLFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDG"
BASE COUNT         3295 a         1384 c         1567 g         3315 t
ORIGIN      
        1 ttcttgaaaa agaaagacaa tttttaagta ctttaggcaa agattttcaa aaccaaaatt
       61 tgctttttgc agatagtata gtttgtatag atgaaaaaat tcttaccaaa gcaaaggata
      121 aaaaagaagc ttatgaaatg cttgccttgc aaaatggaaa gtatgcaagt attttatcgg
      181 cttttttgct tgtaaaacct gaaaaaagag ttttttctct ttcaaaaact acactttatt
      241 ttaaaaattt tgatgaaaat gctttaagag attatgtaga aaatgatctt tataaaggca
      301 aggcgggttg tattatgtgt gagggttttc atcaaaattt catcacccaa caagtaggaa
      361 atctaagcac tgctttaggg cttgatatcc aaactttaaa ggcttattta tgaaaatatt
      421 aaaatatatt ttttcatttt ttactctttt gtttataact ggatttattt atgtggctta
      481 tcttttcaca agtgctgata ctgagggtta tacttttaaa gaatacaaac ctcctcttac
      541 aacacaaatt tacgatagaa atggcaagct tgtggctaat atttttgaac aacatcgttt
      601 ttacgctcct tatgaagagc ttcctccacg ccttatagaa gctttggttg ctatagaaga
      661 tacaagcttt tttgaacata atggagttaa tatcgacgcc atttttagag ctgccgtaaa
      721 aattataaaa agtggtggaa aaaccatgga aggagcttcc actcttactc agcaatttat
      781 taaaaacacg gaattaaccc cagaaagaac tattgcgcgt aaaattcgag aagctttgct
      841 tgcttataaa atggaaacca ttttaactaa ggaacaaatt ttagaaaggt atttaaattt
      901 tatctttttt ggacatgggt attatggagt aaaaaccgca gctttggggt attttcataa
      961 aaatttaaat gaactaagcc ttaaagagat tgctatgcta gtaggtatgc caaaagcacc
     1021 tagcagttat gatcctacaa agcatttaga tctttccatc tcaagagcaa ataatgttat
     1081 ttcaagaatg tataatctag gttggatttc aaaagcagat tatgatacag ccattaaaga
     1141 aattccgcaa gtttatgatg atacgcttac tcaaaatgct gctccttatg tcgtagatga
     1201 agtgattaaa caattaagcc ctaatatcaa agacttaaaa acaggtggat ataaaatcat
     1261 tttaaatata gacttagatg ttcaaaatat ggcacagaat gctttaaaat ttggttatga
     1321 tgagatagta aaacgcgata aagatgcaaa tttaagcact ttaaacggag ctatggtcgt
     1381 ggtaaatcat caaagtggtg atgttttagc tttggtaggt ggagttgatt atgaaaaaag
     1441 taattataac cgcgctactc aaagtatgcg tcaacctgga agctctttta aaccttttgt
     1501 gtatcaagtg gcgattaatt taggatattc gcctatgagt gaaattgctg atatttctag
     1561 aatttttgaa ggtggagcgg gtaataatga ggattggaaa cctaaaaatg aagggggtaa
     1621 atttttaggt ttaattacct taaaagaagc tttaacaaga tcaagaaatt tagctaccat
     1681 taatctcgca cttgatatgg ggcttgatgt tctttactct aaactaatgg aatttggatt
     1741 taaagatata ccgcctaatt tatcaatcgt attgggaagt tttggtattt ctcctttgga
     1801 gtattcgaaa ttttatacca tgtttgggaa ctatggtacg attaaagatc ctcaaattat
     1861 cagacaagtt caggataaaa ctggtaaaac catcatggaa tttaactcaa atgagcgtaa
     1921 agtcagcgat gaagcgcaaa gttttctggt tttagatatg atgagaaatg ttgttgaaaa
     1981 aggcacaggg cgtaatgcaa gagtaaaaga tatagaaata gcaggaaaaa caggaacaac
     2041 gaataaaagt gttgatgctt ggttttgtgg acttacgcct gaaatagaag caatcatttg
     2101 gtatggaaat gataacaaca agcctatgcg ttatacagaa ggtggggcta gaacagctgc
     2161 tcctgtgttt agagaatttt taactcaata tatagaaaaa ttccctgata caactagaaa
     2221 atttagcatt cctaatggag tttatcgtgg aaattataaa ggagaaagtg cttattatac
     2281 caccaaatca ccattaccaa aagcaaatat gaaatttaat gaaagcgaga ttatattttg
     2341 aaagtagaaa gatctacttt caaaatgatt aagctttttt gatgattatt tcatcatctt
     2401 ttgcatcaat gataatgcta tcattttcat gaagttcatc agcaagtatc atatcgctta
     2461 atttatcttc tataagatca taaatagctc ttcttaaagg tctagcacca aaatcagggt
     2521 caaaaccatc tttagcgatt aaaagggctg cattttcgct taaacttgct tttattccct
     2581 tgttttctaa gctcatttgt aaatctttaa ataaaagctt gactatttca taagcttcat
     2641 cttttccaag tggattaaag gtgataatat catctaaacg gtttaaaaac tcaggtttaa
     2701 agaaattttt taactcattt tttaccgcat cttcttgttc ttttccgctt aaattcataa
     2761 tagcgtttga ggcgatatta gaagttagaa tgataatggt atttttaaaa tccactgtta
     2821 cacctttgct atcggttgct ctaccatcat ctaaaatccc taaaagcaca ttaaatacat
     2881 ctttatgtgc tttttcaact tcatcaaaca aaagcacgct ataaggtttt cttcgtacgg
     2941 cttcagtaag ctctccacct tcttcatgtc ctatatatcc tggaggcgca cctaagagtc
     3001 ttgaaacact atgtttttcc ataaattcac tcatatcaaa gcgaatcatt gctttttcat
     3061 catcaaataa aaattttgcc aaagctttag ccgattgtgt ttttcctacc cctgttggcc
     3121 ctaaaaataa aaagcttcct ataggtttat tgtccgcatt aagccctgct ttgttacgtt
     3181 taatggctct agctaaagca cttaaggcct tatcttgtcc tatgacactt tcttttaaat
     3241 gtttttccac ttctaagaat ttttgttttt cagaagttaa cattttttgc acgctaatac
     3301 ccgtccattt gcttaaaatt ccagcaacca aatcctcatc tacttgattt ttaagtaaaa
     3361 ctccattttc actcattttt ttccatttat cttctaaaat ttctacttct ttttcaagac
     3421 ttggaatttt tccatactct agctcggctg ctttttgaaa ttcacctcta gctttagcca
     3481 aagaagcttc atttttaagc agatcaattt cttttttctt agcacttatg ccatcaaaaa
     3541 cacttttttc attttcaaac tgtgaattta gggcattttg tttttctttt aaattagcta
     3601 gttcttttgc gatttcatcg agtctttttt gatttttttc atcattttcc atttttaaag
     3661 cttcattttc aacttctaaa gtttctatat ctttgcgtac ttttcttaaa gaacttggtt
     3721 cgctttcaat ttgcattttc agttcagctg cagcttcatc gattaaatca atggccttat
     3781 caggtaaaaa acgatctgct atataacgct ttgaaagttt agctgcggct actaaagcac
     3841 tatcatttat ggttacatta tgatgaattt caagcttttc ttttataccc cttaacatag
     3901 ccaaagcctc attaacactt ggctcaccta catttacagg ttgaaaacgg cgttgcaagg
     3961 ctgcatcttt ttcaaaatat ttacgatatt cttttaaagt agttgcgcct atggtatgga
     4021 gttcacctct tgcaagagca ggttttaaaa tatttgccgc atccatgctg ccttcactcg
     4081 ctccagctcc tactatagtg tgaatttcat cgataaaaag aatgatattt tcacttttta
     4141 tcacttcatt aaccacagct tttaatctat cttcaaattc tcctctgtat tttgcacctg
     4201 caattaaagc actcatatca agagcgatga cttttttatt ttgcaaagat tttggaacat
     4261 cttttttaat aattctttgt gctaaagctt ctactatagc tgtttttcct acgcctggtt
     4321 cacctaaaag tatagggtta tttttggttt tacgtattaa aatttgcatc aaacgttcga
     4381 tttcttcttc tctgcctata acaggatcaa gtttaccctc gcttgctttt aaggttaaat
     4441 ctataccaaa tttatttaag ctatctaaag tttcatcgct tgttttgcta tccatttttc
     4501 gtcccgctct tagactttca agctcttttt gaaattctct taaatctaaa aattgcgcca
     4561 aaatttcttt aataggactt ttttgacttt cacttataag ccaagtatcc acacttaaat
     4621 aactatctcc attagcactc attaatcctt tagcattttc taatgaattt ataagttcat
     4681 tggaaaagcg tatattttca cggtttacat ttgaactcgt tgcaagtttt gaaattctgc
     4741 ttttaatttc aagctctaag gcttctttag aaatatttaa tttatttaaa atttgattta
     4801 aaatacttgt actatctacg cttaaagccc ataaaagatg taaaggtaca acttcattat
     4861 ttttagaatg tatagctaaa gatgctgcac tttcaaggtt tgaaagcata ttatcagtta
     4921 aaaaatcttg tatatttgcc atgttttatc ctttatttag tttatagact tgctattata
     4981 taactttagt catataatgt caagttaatt gagtaaaatt ttttaaataa taggacaaat
     5041 gactaatttt agattatttc ataaacatat ctatagcctt gtttaattct tctatacttt
     5101 gaatatcatt ttcttctacg gcgtgtacca tacaatgagc taaatgttct tttaaaacta
     5161 cttttgcagt attgttaact tcggctttta cggcagcaag ctggattaaa atttcactac
     5221 agtctttgtc attttcaacc attcttttaa tagcgcttaa atgtcctatg gttctactta
     5281 gacgattgca aactgcttta agatgttttt gagaatgtgt atgagtatgt ttttcttggc
     5341 acattgtatt aactttcttt ttgaaatttt tagtctattt taacatattt ttaagaattt
     5401 aaatttattt acgaattttt aagcaatttt tattaaaatt tactctttaa actaaaactc
     5461 aatgatggag cttattttga aaacaaaacg attttttgcg ggtcttgcag gctttgccac
     5521 tactttcatt ttatgtctat ttttaacaag tcatttacaa gctaaagttg atcaaaaaga
     5581 agagcaggtt caaaaacgcc tagaagcttt agataagctt acaaaaactc ttgccatagt
     5641 agagcaatac tatgtggatg atcaaaatat cagcgatttg gtggataaat ctttatcagg
     5701 acttttaagc aatcttgatg cgcattcttc ttttttaaat gaaaaagatt ttaatgatat
     5761 gaaaattcaa accaatggcg aatttggtgg ccttggtata accgtaggta tgaaagatgg
     5821 tgctttaaca gttgtttctc ctatagaagg aacaccagca gataaagcag ggataaaatc
     5881 aggagatatt attttaaaaa ttaatgatga ggccacttta ggaattaatc tcaatgatgc
     5941 tgtagataaa atgcgtggta agccaaaaac tcaaatcact ttaactattt ttagaaaagg
     6001 tgcaacaaaa ccttttgatg ttacacttac aagagaaatt attaagatag aaagtgttta
     6061 tgcaaaaatg atagaaaatg aaaacattct ttatcttagg gttacaaatt ttgataaaaa
     6121 tgttgtagat gtggcaagta aagaacttaa aaaatatcct aatgttaaag gagttatttt
     6181 agatcttaga aataatcctg gtggactttt aaatcaagcc ataggacttg taaatttatt
     6241 tgtagataaa ggtgttattg tttctcaaaa aggacgcatc gcaagtgaaa atcaagaata
     6301 taaagccgat cctaaaaaca aaatttctaa tgcttctttg gttgtgcttg taaatggtgg
     6361 aagtgctagt gcaagtgaaa tcgtaagcgg agctttacaa gatcttaaac gcggtgttat
     6421 tgtgggtgaa aatacttttg gaaaaggtag tgttcagcaa atcataccta ttaataaaac
     6481 tgaagcttta aggcttacta ttgcaagata ttatcttcca agcgggcgta ctattcaagc
     6541 agtgggtgta aaacctgata ttgaagtttt tccaggtaaa gtaaatactc aagaagatgg
     6601 tttttctata aaagaaagcg acttaaaaca acatttagaa agtgagcttg aaaaaataga
     6661 taaaaataaa aaagaagata aacaagaaaa taaagacaat aaaaatctaa tcagtcaaaa
     6721 acaaatcaat gatgacgcac agttaaaatc agctattgat actattaaaa ttttaaatat
     6781 caaacaagga caataaaatg acaaaaaaag aaatgcttta tgaaggaaaa ggtaaaaaac
     6841 ttttcaaaac tgatgatgaa aatttactaa ttagtgagtt taaagatgat ttaactgctt
     6901 ttaatgcaga aaaaagaggc aatgaaagtg gaaaaggtgc attaaactgt aaaatcagta
     6961 ctgaaatttt tcatttgctt gaaaaaaatg ggattaaaac ccatttggta gaaattataa
     7021 gcgatacaga acaagtggtt aaaaaatgta aaattgttcc tattgaagtt atagtacgca
     7081 atgttgcaac aggttctctt acaaaaagac tgggcattaa agatggcact gtgctacctt
     7141 ttgctttggt ggaattttgt cttaaagatg atgccttagg cgatcctttt atcaatgatg
     7201 agcattgttt gattttaaat ttagtgcaaa atgaagctca aattagtgaa attaaaaata
     7261 tggctagaaa gattaactct attttaactc cattttttga taataaaaat ttaaggctga
     7321 ttgattttaa aattgaacta ggtttaacca aggataatga gcttgtttta gctgatgaaa
     7381 taagccctga tagttgtaga ttttgggata aatttagcaa tgaaaaatta gataaagata
     7441 gatttcgtca agatctaggt aatgtaaaaa tggcttatga agaagtttta aaaagaatat
     7501 taaattaagg aaaaatatgg aagttattgt aaatatttct ttaaaaaatg gggttttaga
     7561 tccacaaggc aaagcggtgg aaaaagcttt gcattcttta aattttaata gtgttaaaga
     7621 agtaaaaata gcaaaacaaa tcaaaatttc tcttgatgag aaagatgaaa aattagccaa
     7681 agaacaagta aaaaaaatgt gtgaagagtt gttggtaaat agcgtcattg aagattatga
     7741 gcttgtaatt gagaaagagt aaaatgaaag ttgctattat tagatttcca gggacaaatt
     7801 gtgaatttga tacagcttat gcctttgaaa aacttggagt aaaaacgcag attgtttggc
     7861 atgaagaaaa agaatttgat gcagatttag ttgttttgcc aggcggattt tcttatggag
     7921 attatctaag atgtgcagct attgcaaaac ttgctcctgc tatgcaaggt gtttttaatc
     7981 atgcaaaaaa gggaggatat atcttaggca tttgcaatgg ttttcaaatt ttacttgaaa
     8041 gtggtctttt aaaaggtgca atgaagcata acaacaatct tagttttatc tcaaaaaacc
     8101 aaaatttaag agtagtttct aatgataatg cctttttgaa aaatttcaaa aaagatgaaa
     8161 ttattaattt accaattgcc catggagagg gaaattatta cgctgatgag actactttaa
     8221 aagaattgca agataaagat cttattattc taaaatacga gccaaatcca aatggttctg
     8281 tatttgatat cgcaggaatt tgtgatgaaa acaaaaaaat ctttggactc atgccccatc
     8341 ctgagcgtgc ttgtgaaaaa gttctaggta atgatgtagg tttaaaaatg cttaaaggct
     8401 ttttacttga aaattttatt aactttaatt tttagcattg ttgtattgtt tggcaggggt
     8461 gaaatttctg tatttagcgg ccaagatgaa aatatgcaaa aagaattaca aaaattaccc
     8521 caagaagaac aaaaaattta tcaaaatatt ccgccaagtg atgaaaacaa tgactttgaa
     8581 agcaatgtag atgatccttt tgtagccaaa gggagtttgg ttcttacaaa tgatgaatat
     8641 ccaagtagag tatatgttgg agaagttttt cctattacga tctatgctcg cactacggaa
     8701 aatataaaat ttgattttaa cataagcgta gaaaaaacta acttatcttt tttgaatcca
     8761 gatgcaaaat gggaatttat caacaatgaa tataaaacaa ctttatggtt tgaagccaaa
     8821 aattcaaatg ctagtttgag taaaatttct atcaaacttc ttagaaataa tgaagctttt
     8881 caagaggctg atatcaatct taatcctatc aaatttgaaa atactttatt caataaagat
     8941 ttttcacacc ttgtggcaag ttctttggaa attaaaaaag ttaaagcgag ttattttgat
     9001 gatgctaata tcattatgat gatagaacta aacgcaacca atacaaatct taaaagcttt
     9061 tttatagaag gaattcaaaa gcaaggtatt gaaaatttaa aaggggattt taatgcttct
     9121 agcgcttttt attatgctat tttgccatta agtaaaacaa attttgaatt ttcgtatttc
     9181 aataaggaca gtaaaaagct tgaaaatata aatttaaaat taaaaattag tgacgatgag
     9241 attagtactc agagtgattt aaatcctgta aataaagact taaatattta taaacaatat
     9301 gctttgtggt ttttagcggt tttatttgga gttttatttg tatggagaaa aaattacatt
     9361 attctggctt tggcagttgt ttgttttgca cttagttttc ttgtagatac caatactcaa
     9421 aatgcaatta tcaaggctgg ttctagggct aaaattttac ctacagagcc ttcaacttat
     9481 ttttatacgg caaatgcaga tgaaaaagta gaagttttgg gcaaaagaca aaattatatt
     9541 aaagtattgt tttctgatgg a
//
LOCUS       DARBAR010000060         9280 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.060, whole genome shotgun sequence.
ACCESSION   DARBAR010000060 DARBAR010000000
VERSION     DARBAR010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9280
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.060"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..1486)
                     /locus_tag="SB815_001110"
     CDS             complement(<1..1486)
                     /locus_tag="SB815_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG0906845.1"
                     /translation="MNFRSLNLSTKLILSVAIGIVLGIVVIVLTVSIYTSKSMEKEAK
                     DSIFLSSKRYVNYMEGILNEEVVLTKAMATSLNEIFSKNDQVNAGIIESLLRNTFDSS
                     GYAAYAFLYLQDSSILTHVESLDKNFKNSDGKSVTMIFFDETTGKAGGIKSIHAPSNF
                     SQLPIIEKIKKNARYGDLDTIFLGSPSRLNYDGTEFLGINLGMPLFNKEGKFIGIVGF
                     TFDFLEISETILDPKLDFYKDDLRFLITDQGVIVIHKNKDAILKTLPEINQDASVQLI
                     IDAVKNHKDLIIDNYVDLSGNLSYAGVASFSTLGDSSHWSMVVTAPKKSIFAPLYELN
                     FILISIAIIVLIAILIILYFCVKNIVGSKLPIIVNSLQNFFDFINHKTKNVSTIEVKS
                     NDELGQMGKIINENILATKRGLEQDNQAVKESVETVHVVEGGNLTARITANPRNPQLI
                     ELKNVLNRLLDALQARVGSDMNEIQRVFNSYKSLDFTTEVKDANG"
     gene            1669..2544
                     /gene="zupT"
                     /locus_tag="SB815_001111"
     CDS             1669..2544
                     /gene="zupT"
                     /locus_tag="SB815_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HEG0906846.1"
                     /translation="MQFTFEQIFIAILLTLFAGFSTAIGSTIAFFSRKDDLRVLSLGL
                     GFSAGVMIYISFMEILPTALKDFKNHYDSHWAELLGLACFFGGILISLLIDKLIPEDV
                     NPHEPKEDLSELKICPLPQKGQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGDKKKAFIYSALSGLA
                     EPLGAFVGALILLPFIGDLTLAISFAVIAGIMVFISLDELLPAAKTYDKAHDSLYGLI
                     AGMAIMALSLNLLGQ"
     gene            complement(2568..5084)
                     /locus_tag="SB815_001112"
     CDS             complement(2568..5084)
                     /locus_tag="SB815_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HEG0906847.1"
                     /translation="MLDRRKFLKIGASLSALPLIPSLSAGKTVEASKVSLGLVKNGEV
                     ITAAHWGILKLTIKDGKIVKSEPWEKVTKMDNPLQHYTADMVYKSRVKYPYVRKSYLE
                     NPDNPKPELRGKDEFVRVSYDEAIKLIAKELKKTRDSKGASAIFGGSYGWKSSGNMQN
                     SRILLHRFLNVTGGFVGATGDYSTGASQVIMPYVVGSIEVYEQQTSWENILSDSKYVV
                     IWGADPLSTLRIAWTSNEQRGLAYFEKLKDSKIKVICIDPVKTTTAKFLNAKWIAPRP
                     NTDVALMMGMASHLIAKKKVNYEFLDTYTTGFDKFKDYLEGKEDGVKKDTKWASKICG
                     IDEKTIKNLAETFYDNSTMIMSGWGMQRAHHGEQPHWMLVTLCAMLGQIGTKGGGFGL
                     SYHYSNGGVPTCKGGVIGGMTAGSLGIWKNGKFKGLSKAEASSEGAEWLQNAASYSFP
                     VARIADALLHPGKTIDHNGAKITYPDIDFIYWVGGNPLVHHQNTNTNVKAWRKPRTVV
                     VNEIYWTPTAKMADIVMPVTSSYERDDITMTGDYSNMHIAPMKQAVEPVGESKDDYVI
                     FSDICKIYGKDVFNAYTENGKKAKDFIKEYYNSALKQTQSFGEAFATPMPSFEEFWAK
                     NKPITFEPTAESLEWTRFSEFIEDPILNALGTDSGLIEIYSETIKNYNYDDCKAHPTW
                     FEPIEWLGNASKEAPFHLLTNHPRDRLHSQLCHTSLRDTYAIKDREPILINSKDAKKL
                     GIKNGDVVRVFNKRGEVLAGAVVSDEIMQGVVRLCEGAWYDPNENGLCKCGNANVLTM
                     DIPTSKLANGNISHTGLVNIEKFKGELPKLTAFSAPKGAN"
     gene            complement(5095..5670)
                     /locus_tag="SB815_001113"
     CDS             complement(5095..5670)
                     /locus_tag="SB815_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HEG0906848.1"
                     /translation="MKKIFISFVVLATCLWAKNTAYTDEVVSLYLNKDDTKVIGRLLP
                     TNPFEVLKSENNRVLLKIDGYVNPKAPSVIYFNDSQRIIVAAFSKNTKLNFSQRITGK
                     NGKWDKVSLEIWADKKEFVKDNKEMLNRAKELFVNNCGICHAIHKEKEFTANAWPAIF
                     RSMADRTGIDKKDRWLVIEYLQKNAKDFKTK"
     gene            complement(6151..6660)
                     /locus_tag="SB815_001114"
     CDS             complement(6151..6660)
                     /locus_tag="SB815_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HEG0906849.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIKKCYLILS
                     ILNQQQVGGEIFNDKNIRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPTFNNP
                     EFYHTLKCI"
     gene            complement(6660..7190)
                     /locus_tag="SB815_001115"
     CDS             complement(6660..7190)
                     /locus_tag="SB815_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HEG0906850.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKIAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQVQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(7202..8290)
                     /locus_tag="SB815_001116"
     CDS             complement(7202..8290)
                     /locus_tag="SB815_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEG0906851.1"
                     /translation="MPADLNDYFNKKNGNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIATQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            complement(8303..9217)
                     /gene="ilvE"
                     /locus_tag="SB815_001117"
     CDS             complement(8303..9217)
                     /gene="ilvE"
                     /locus_tag="SB815_001117"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HEG0906852.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
BASE COUNT         2845 a         1546 c         1380 g         3509 t
ORIGIN      
        1 ctccattggc atcttttact tcagtagtaa agtcaagaga tttataacta ttaaatactc
       61 tttgaatttc attcatatca gaacctactc tagcttgtaa agcatcaaga agtctattta
      121 gaacattttt taattctatt aattgtgggt ttcttggatt agcagtaatt cttgctgtta
      181 aattaccacc ttctactaca tgaacagttt caactgattc tttaacggct tgattgtctt
      241 gttctaagcc tcttttagta gcaagaatgt tttcattgat aattttaccc atttgcccca
      301 attcatcatt gctttttact tctatagtag aaacattttt tgttttatgg ttgataaagt
      361 caaagaaatt ttgcagggaa ttaactataa ttggaagttt agatcctact atatttttta
      421 cacaaaaata cagaataatt aaaatagcaa ttaatacaat aattgcaata ctaattagaa
      481 taaaattcaa ttcatataaa ggcgcaaaaa tagatttttt aggtgctgtt acaaccatgc
      541 tccaatgact cgaatctcct aaggtactaa atgaagcaac tcctgcatag cttaaatttc
      601 cgcttaagtc aacataatta tcaataatca aatctttatg atttttaaca gcatcaataa
      661 ttaattgcac ggatgcatct tgattaattt caggtaaagt ttttaaaata gcatctttgt
      721 tcttatgaat aacaataaca ccttgatctg ttattaaaaa tcttaaatca tctttataaa
      781 aatctaactt cggatcaagt attgtttcag atatttctaa aaaatcaaaa gtaaatccaa
      841 ctataccgat aaattttcct tctttattaa ataagggcat tcctaagtta atacctaaaa
      901 attctgttcc atcataatta agtcttgatg gagatcctaa aaatatagta tcaagatcac
      961 catatcttgc atttttttta attttttcta taataggtag ttgtgaaaaa ttgctcggag
     1021 cgtgtatgct tttaataccg cctgccttcc ctgtggtttc atcaaaaaaa atcattgtta
     1081 cacttttgcc atcagagttt ttaaaatttt tatctaaaga ttcaacatga gttagtatag
     1141 aagaatcctg taaataaaga aaagcataag ctgcataacc gctactatca aatgtatttc
     1201 ttaaaagact ttctattata ccagcgttca cttgatcatt ttttgaaaat atttcattta
     1261 atgaagtggc cattgctttt gttaatacaa cctcttcatt taaaatacct tccatgtaat
     1321 tgacatatct ttttgaagac aaaaatattg aatctttagc ttctttttcc atacttttag
     1381 aagtatatat agatacggtt aaaacaatta caactatgcc taagactatt cctattgcta
     1441 cagataaaat aagcttagta cttaaattta gagaacgaaa attcatattt ttcctttttg
     1501 tgagctttta aatttttaca ataaaatttc agagttgcta ttctatttta taatatttta
     1561 aaatattctt aaaaatttta atatttttta tctttttatc atatgttaac tttttataaa
     1621 tattaagtat ttaaaatatt aaattttaat tagaagtaag aattattaat gcaatttaca
     1681 tttgaacaaa tttttatagc aatactactg actctttttg caggtttttc tacagctata
     1741 ggttctacaa tagccttttt ttccagaaaa gatgatttaa gagtgctttc tttaggactt
     1801 ggtttttcag ctggagtaat gatatacatt tctttcatgg aaattttacc tactgcactt
     1861 aaagatttta aaaatcacta tgattcgcat tgggctgagc ttttgggatt agcttgtttt
     1921 tttggtggaa ttttaatatc tttattgatt gataaattaa tccccgaaga tgtcaatcct
     1981 cacgagccta aagaggattt aagcgagtta aaaatttgtc ctttacctca aaaaggacaa
     2041 aatcctccga aatttcatcc tggagaaaag ttgcatcaga tcaatactaa agctttaaaa
     2101 cgcacaggga tttttacagc tttagctatt gctatacata atttcccaga aggttttgct
     2161 acttttattt caagtcttga taatcttact ttaggaattg ctatagctat agctgtggct
     2221 atacacaata tccctgaagg tttggctgtg agtttgccaa tttaccatgc tacaggagat
     2281 aagaaaaaag cttttattta ttcagctctt tcgggtttag cagagccttt gggtgctttt
     2341 gttggagctt tgattttatt gccttttata ggcgatctta ctttagctat aagttttgct
     2401 gtgattgcag gaattatggt ttttatatcc cttgatgagc ttttgcccgc tgcaaaaact
     2461 tatgataagg ctcatgatag tttatatgga cttatcgcag gaatggcaat aatggcttta
     2521 agtttaaatt tgcttggaca atagaaagcc ttgcggcttt cttaaattta attcgcacct
     2581 tttggggcgc taaaggcagt aagttttggt agttcacctt taaatttttc tatgtttacg
     2641 agccctgtgt gagagatatt gccattggca agttttgaag ttggtatatc catggttaaa
     2701 acatttgcat ttccacattt gcaaagtccg ttttcattag gatcatacca agcaccttcg
     2761 caaagtctta caaccccttg catgatttca tcacttacaa ctgcccctgc taaaacttca
     2821 ccgcgtttgt taaacacacg cactacatcg ccatttttta taccaagttt ttttgcatct
     2881 ttggaattga ttaaaatcgg ctctctatct tttattgcat aagtatctct taagcttgtg
     2941 tggcaaagtt gagagtgcaa gcgatctctt gggtgatttg taagtaagtg gaaaggtgct
     3001 tctttgcttg catttccaag ccattcaata ggctcaaacc aagtaggatg tgccttacaa
     3061 tcatcataat tataattttt aatcgtttct gagtaaattt caatgagtcc tgaatctgta
     3121 cccagagcat ttaagatagg atcttctata aattctgaaa aacgagtcca ttctaaactt
     3181 tcagctgttg gttcaaaagt gattggttta tttttagccc aaaattcttc aaaacttggc
     3241 ataggagtag caaaagcttc accaaaactt tgagtttgtt ttagggcgct attgtagtat
     3301 tctttgatga aatctttagc ttttttgcca ttttctgtgt aggcattaaa gacatctttt
     3361 ccataaattt tgcaaatatc agagaaaatt acataatcat ctttgctctc acccacaggc
     3421 tcaactgctt gtttcatagg agctatatgc atatttgaat aatctcctgt catggtaata
     3481 tcatctcttt cataagatga agttacaggc ataacaatat ctgccatttt agctgttgga
     3541 gtccagtaaa tttcatttac cacaacggtg cgtggttttc tccatgcttt tacattagtg
     3601 ttggtatttt gatgatgcac taaaggattt ccacctaccc agtagataaa atcaatatca
     3661 ggataagtga ttttagcacc attatgatct atggtttttc caggatgaag taaagcatca
     3721 gcgattcttg ctacagggaa agaataactc gctgcatttt gaagccattc tgcaccttcg
     3781 cttgaagctt ctgctttgct taagccttta aatttaccat ttttccaaat ccctaagcta
     3841 cctgctgtca taccgccgat cactccgcct ttgcaagttg gaacaccacc attgctgtaa
     3901 tggtagctta gtccaaaacc acctcctttt gtgccgattt gtcctaacat cgcacaaaga
     3961 gtaactaaca tccagtgagg ctgttcgcca tgatgtgctc tttgcatacc ccaaccactc
     4021 ataatcatag tagaattatc ataaaaagtt tcagctaaat ttttgatagt tttttcatcg
     4081 ataccgcaaa ttttacttgc ccatttggta tcttttttaa ctccatcttc tttgccttct
     4141 aaatagtctt taaatttatc aaagcctgta gtgtaagtgt ctaaaaactc gtaattgact
     4201 tttttcttag cgattaaatg gcttgccatg cccatcatta aagctacatc ggtatttggg
     4261 cgtggagcta tccatttggc atttaaaaat tttgctgtag tggtttttac aggatctata
     4321 caaattactt tgattttact gtctttaagt ttttcaaaat atgccaaacc tctttgttcg
     4381 tttgaagtcc aagctatacg taaagtagaa agtggatcag caccccaaat cacaacatat
     4441 ttagaatcac ttaagatatt ttcccatgag gtttgttgct cataaacttc aatcgatcct
     4501 acaacataag gcataatcac ttgagaagct cctgtagaat agtcccctgt agctcctaca
     4561 aatccacctg ttacatttaa aaatctatga agcaagatac gtgagttttg catatttcca
     4621 cttgatttcc agccataact tccaccaaaa atcgcacttg cgcctttact atctcttgtt
     4681 tttttaagtt ctttggcgat gagtttgatc gcttcatcat aacttacgcg aacaaactca
     4741 tcttttccgc gaagttcagg tttaggattg tcaggatttt caaggtagga tttacgcaca
     4801 taagggtact tcacacgaga tttataaacc atatcggcgg tatagtgctg taaaggatta
     4861 tccatttttg taactttttc ccaaggttca ctttttacta ttttgccatc ttttatagta
     4921 agttttaaaa tcccccagtg tgctgcggtg atcacttctc cattttttac aagtccgagg
     4981 ctaacttttg aagcttctac ggtttttcct gcacttaagc ttggaatgag aggtaaagca
     5041 cttaagctcg ctccaatttt taaaaatttt cttctatcta gcatgctttt ctccttattt
     5101 tgttttaaaa tcttttgcgt ttttttgtaa gtattctata actagccatc tgtctttttt
     5161 atcaatacct gttctatcag ccatagaacg gaaaattgca ggccaagcat tagctgtaaa
     5221 ttctttttct ttgtggatag cgtggcaaat tccgcagtta tttacaaaaa gctctttggc
     5281 tcgatttaac atttctttat tgtctttgac aaattctttt ttatctgccc aaatttcaag
     5341 gcttacctta tcccatttgc cattttttcc agttattctt tgagagaaat ttaattttgt
     5401 atttttagaa aaagctgcaa caataattct ttgagagtca ttgaaataaa tcacagaagg
     5461 tgctttagga tttacataac catcaatttt tagcaaaacc ctgttatttt cgctttttaa
     5521 tacttcaaaa ggatttgtag gtaaaagtct tcctatgact ttagtatcat ctttattaag
     5581 ataaagcgat acaacttcat cggtataggc ggtatttttt gcccataaac atgtcgctag
     5641 gacaacaaaa gaaatgaaaa tttttttcat tactaattcc ttaatataaa tttgatgtaa
     5701 atgtatttta atactatgca atttaattat tacttaattg tataattttt actaagatta
     5761 cttatttttg gtgctttaat attattcttt attgatataa taaatttgag ttaattatat
     5821 tttacttatt gttttttaga aaagataaaa cttcaattat aaaaaaagtt tgttttgagc
     5881 ccagattaat acttctgagc ccatttcgat ctcgttgagt tttaagatat aagcttttta
     5941 tagctttatt ttccctccca tttttaactc tcatttagca aagtgctttt agatttaaag
     6001 gttgattgac tccttatctt ctatattaat aaatattata ttaataaaac ttaaattatt
     6061 attaatattt atataattta tagcggaatt attgttttgt tatgtgaata attaatgtat
     6121 tttagaattt ttgctagttg atttcttgaa tcaaatacat tttaaggtgt gataaaattc
     6181 aggattatta aaagttggag gaaaaggaac gctagctcta aattctttat aggtattacc
     6241 cgggagtgtg tctatgattt ctatagtata agaaacactt gtattttgca ttttagcgtt
     6301 acggatattt ttatcattga aaatttcacc tcctacttgt tgttggttta atatgctaag
     6361 tatcaaatag cattttttga tttcaaattt agtaagattt tgaacttttc cacttactat
     6421 aacgctttca tgtcttagat ctcttgtgta ggttagtttg ctaagatcgg cttgagtggt
     6481 gaattgattg attgttagaa aaatagaata tatcaaaagt gcggtaaaaa tagtagctat
     6541 ggtataagaa atcaaagcca tttctttctg tttgactttt agaaagatta aaatacaaat
     6601 caaggcaaag caaataagta aaatgataaa agctataata tgaaaaatcg taaaatgcat
     6661 taaaaacact ccgaaactaa gcgtatggta tagttatttt catagttaaa attttcaaaa
     6721 gcaattcttt gaacttgggt tgcgtttttc tttagatctt taatttctct acttttttgt
     6781 ctaaaaggga taaatttctt tttatattct tctatgatat tatcattagg tattttatct
     6841 gcaaaaattt tagctgtaat tttacattct ttaaaattat tttttgaatt atttgtaatg
     6901 ttaaaatcaa caattaaatc atttgagctt tgtatcattt tttgatctgt aatagcgatt
     6961 tttcgagttc ttacttcatt gtctattagt ttatacccat agatataaac taaaaaacaa
     7021 ataataatat caaatgcaat aataaaaagt gctgctatag gtctatggcg taaaaataca
     7081 caaagaagta aaacacaagt gaagagaaaa aaaactaata aaatcagcat ataatctact
     7141 aaatataaat gagtagtgta aaaaagcacg atttctctta gtttctccac ttgtgtatcc
     7201 tttagttcat gttggcagca ctttgctttt tagcatcttt ggtatcaacc caaatgtttg
     7261 gcactgctcc acctggagtt aagaaaattt tagcatcttg attgactttt aaagcttcat
     7321 taaattcttt ttgagtttca atttgtttta aatttagcaa aggggtgttt aggctgtttg
     7381 cgatttcttt gttagaataa gcttgtgcat ctgcttctat tttaacagcc atagctttac
     7441 ctttggcgct gattatggtt gcatttgctt ccccttcagc taaagcagct ttttttaagg
     7501 cttcttgatt agctctttct acttcatatt tagttctttc agcctcttgt tttgcaattt
     7561 gcacgcgttc gatttgttct tttacttttg aaggtaaaat aatttctcta agttgtacag
     7621 cgcgaagttc tacaggttca tttggttggg cttctatggt ttttcttata ccttcttcta
     7681 tttgagtggc tattgtatta cgattagtag gaagttcttc ggctgtgtat tttcctacaa
     7741 cacttcgcac tacatcacga acaactggat cgataatttt attttcccaa tttaagctcc
     7801 aagtagctat agtttgagga acttgcaaag gatttaagcg gtattgtact gtaacatcaa
     7861 tagatacagg caatccacga gagtcaagta cagaaatact atttttatta ataacacctg
     7921 aacctgaaga taaattttca ttacttccct ctatagaagc atagttgatt tgtcttactc
     7981 tagtatcgat tatggttatt ttttgtacaa aaggtaagaa aaagtgaagt cctggttcta
     8041 atggatttgg gtcatattta cctgttgttg atttaatccc catttcccca gaatttatca
     8101 ccataaaagg ttttgcaacg attaaaaata agataataat aatcacccca taaacaaatg
     8161 gagagaattt tccaaaacct ttaaaattaa attctggtgc tttgaaattg aaattttgac
     8221 ggttgttgtt tccgttattg ttagaatttc catttttttt attgaaataa tcattcaaat
     8281 cagctggcat ttatttcctt ttttaaatat aagttagcat agatgcgtat ttttcattgc
     8341 gtccataaac tacatcaaaa taagcatctt gaagtttttt agttacagat cctcttaaac
     8401 catttcctat tattcttgca tcaatattat taataggtgt gatttcagcg gctgttccgg
     8461 taaaaaatgc ttcatcagca gtataaactt catctcttga aattctttgg cgaagcacag
     8521 taataccaag atcatgagcg attttaagca ctgtatcttg agtaatgctt tttaaagaaa
     8581 aatcatttgg aggtgtgatt aaaaccccat cttttacaat aaagaaacat tctcctgttc
     8641 cttctgcgat aaaaccttct tcatcaagca tcaaagcttc ttcatagcct gcttcaatag
     8701 cttcaaattt tgcaatttga gagttaagat aattcgcact tgctttagct tttcccatgc
     8761 atgatttaac actatttctt gcaaaagacg aaatttttac ttttatacct ttttctaaac
     8821 cttcttctcc aaggtaagca ccccattccc aagctgcaat cccaactctt acaggagctt
     8881 ttatatgata aagtcccata actccatcgc ctaagaaaat caaagggcgg atatagacat
     8941 tgcttttaaa attgtttgct tttaagagtt caatttgtgc attttcaagc tctttttgag
     9001 aaaaaggaca atttaaaaga gtaatttttg cagactctaa aagtcttttg gtgtgatctt
     9061 caagtctgaa aattgctaag cctttatctg ttttataggc tctagttcct tcaaaaacag
     9121 cattgccata atgcaaagaa tgggttaaaa agtgcaaagt tgcatcttta aaatcaacta
     9181 attttccatc catccaaatt ttatctgctg agatcatttt tttacctttt atagttgttt
     9241 atttcttaaa aaatattatt ttaagaataa atcgggattt
//
LOCUS       DARBAR010000061         9235 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.061, whole genome shotgun sequence.
ACCESSION   DARBAR010000061 DARBAR010000000
VERSION     DARBAR010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9235)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9235)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9235
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.061"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..328
                     /locus_tag="SB815_001118"
     CDS             <1..328
                     /locus_tag="SB815_001118"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906853.1"
                     /translation="TLLKTNLYFLEEKTTSKSSNQTHIISLKQSDDEFLNLLFSFLVP
                     QNDEDKNFIEKTRTKIKRNEHNIALIKNPNFNALIDTGFLDTIDTLKKNYISTKPILK
                     ISLILS"
     gene            319..780
                     /locus_tag="SB815_001119"
     CDS             319..780
                     /locus_tag="SB815_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG0906854.1"
                     /translation="MILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEI
                     KNTLLKLKNIEFINHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYD
                     IQIPKPKIAIKFDIDQNEAIQTREKLLKEFKERKLKVIGTHASFIEPEFLD"
     gene            868..1086
                     /gene="infA"
                     /locus_tag="SB815_001120"
     CDS             868..1086
                     /gene="infA"
                     /locus_tag="SB815_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEG0906855.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            1258..1371
                     /gene="rpmJ"
                     /locus_tag="SB815_001121"
     CDS             1258..1371
                     /gene="rpmJ"
                     /locus_tag="SB815_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEG0906856.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            1374..1739
                     /gene="rpsM"
                     /locus_tag="SB815_001122"
     CDS             1374..1739
                     /gene="rpsM"
                     /locus_tag="SB815_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEG0906857.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            1749..2141
                     /gene="rpsK"
                     /locus_tag="SB815_001123"
     CDS             1749..2141
                     /gene="rpsK"
                     /locus_tag="SB815_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEG0906858.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            2169..2795
                     /gene="rpsD"
                     /locus_tag="SB815_001124"
     CDS             2169..2795
                     /gene="rpsD"
                     /locus_tag="SB815_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEG0906859.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            2808..3821
                     /locus_tag="SB815_001125"
     CDS             2808..3821
                     /locus_tag="SB815_001125"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEG0906860.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            3825..4178
                     /gene="rplQ"
                     /locus_tag="SB815_001126"
     CDS             3825..4178
                     /gene="rplQ"
                     /locus_tag="SB815_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEG0906861.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            4351..5250
                     /gene="hisG"
                     /locus_tag="SB815_001127"
     CDS             4351..5250
                     /gene="hisG"
                     /locus_tag="SB815_001127"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEG0906862.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCMLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEIKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNIALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            5258..6544
                     /gene="hisD"
                     /locus_tag="SB815_001128"
     CDS             5258..6544
                     /gene="hisD"
                     /locus_tag="SB815_001128"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEG0906863.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DEALIEQALKFDKAEISKIKITQEEITQASNRLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALTYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVIFRLESLK"
     gene            6541..7599
                     /gene="hisB"
                     /locus_tag="SB815_001129"
     CDS             6541..7599
                     /gene="hisB"
                     /locus_tag="SB815_001129"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HEG0906864.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLHFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGISLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            7596..8183
                     /gene="hisH"
                     /locus_tag="SB815_001130"
     CDS             7596..8183
                     /gene="hisH"
                     /locus_tag="SB815_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEG0906865.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIKNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKTKEGFTFPHMGWNQVHSSHALFKGLEGAYFYFVHSYCVGLGEYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            8180..8911
                     /gene="hisA"
                     /locus_tag="SB815_001131"
     CDS             8180..8911
                     /gene="hisA"
                     /locus_tag="SB815_001131"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEG0906866.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKAEVKALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFPHICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLAN"
     gene            8896..>9235
                     /locus_tag="SB815_001132"
     CDS             8896..>9235
                     /locus_tag="SB815_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrgA protein"
                     /protein_id="HEG0906867.1"
                     /translation="MSSKLSYKELALEILKQSDKPLSANEIWQKALEKGLDKKLSSIG
                     QTPIATLGARIYVDIKELQHNSLFIKASQKPTTFWLKERENELLKLDNKNEITNEKQE
                     KNKFHERDLHP"
BASE COUNT         3513 a         1289 c         1734 g         2699 t
ORIGIN      
        1 caccctttta aaaaccaatc tttatttttt agaagaaaaa accacaagca aaagttcaaa
       61 tcaaacccat ataatctcgc ttaaacaatc tgatgatgaa tttttaaatt tattattttc
      121 ttttttagtg ccacaaaacg atgaagataa gaattttata gaaaaaactc gcacaaaaat
      181 caaaagaaat gagcataata ttgctctgat aaaaaatcca aattttaatg ctttaataga
      241 cacagggttt ttagatacta ttgatacatt aaagaaaaat tacatatcca caaaaccgat
      301 tttaaagata tcactcatat tatcttaaca cacgcacatc ctgatcatat aggagcttta
      361 atgagcgaag aaaatctttt tccaaaagct caaattttaa tcgataaaaa agaatatgat
      421 ttttggatca aaagtgatag acaagaaatt aaaaacacct tgcttaaact taaaaatata
      481 gaatttatta accactctaa agatttgatc tttcaaaatt caggcattaa agccatacct
      541 gcttacgggc ataccccagg tcaaaatgct atcataattg atgataaaat agtcttttgg
      601 ggagatttac ttcatcttta tgatatacaa atcccaaaac ctaaaatcgc tataaaattt
      661 gatatagatc aaaatgaggc tatacaaaca agggaaaaac tacttaaaga atttaaagaa
      721 agaaaactca aagttatagg gactcatgca tcttttatcg aacctgaatt tttagattaa
      781 ttacttaaaa attactaaaa attaagtaaa aattttaata atttttgcta aaattatagc
      841 ctttttattt catgaaagga gaaaattttg gcaaaagatg atgtaattga aattgatggc
      901 accgtacttg aagcattgcc taatgcaaat ttcaaggttg aacttgacaa caaacatgta
      961 attttatgtc atattgcagg aaaaatgcgt atgcattata taagaataat gccaggtgat
     1021 aaagtaaaag tagaacttac accttatagc cttgataaag ggcgtataac ttttagatat
     1081 aaataatcta agttatttaa aagctaattt tagataaaat tagagttttt gcgacaaatt
     1141 acatcgaact atatgaagaa gtatttttaa aatccaccac ttattttgaa aatagttggt
     1201 tattcataaa acctgatgta gtcgtaaatc aagtggaatt cattcaagga gacgctcatg
     1261 aaagtgagac catcggttaa aaagatgtgc gacaagtgca aagtagttcg ccgtaaaggc
     1321 gtggttcgca ttatttgcga aaatccaaaa cataaacaaa gacaaggata aacatggctc
     1381 gtattgcagg tgtggattta ccaaagaaaa aaagaattga gtatggacta acctatattt
     1441 atggtatagg acttttcact tcaagaaaaa ttctagataa agtaggaatt tcttatgata
     1501 aaagagttca tgagttaagt gaagatgaag cagcagctat ccgtaaagaa attcaagaaa
     1561 actatatggt tgaaggggac ttgagaaaac aagttgctat ggatattaaa gcacttatgg
     1621 atttaggaag ctttagaggc ttaagacaca gaaaaggctt accagttcgc ggacaaaaaa
     1681 caaaaacaaa cgcaagaact agaaaaggta agagaaaaac tgttggtgca aaatcataag
     1741 gataaatcat ggcaaaaaga aaaatcgtaa agaaaaaagt agttaaaaaa aatatagcaa
     1801 aaggtattgt ttatatcagt gcgactttta acaatactat ggttacagtg actgatgaaa
     1861 tgggaaatgc tatcgcttgg agtagtgcag gtggtttagg atttaaaggt tctaaaaaat
     1921 caactcctta tgcagcacaa caagcagtag aagacgcttt aaataaagca aaagaacacg
     1981 gaattaaaga agtaggcatt aaagtacaag gaccaggaag cggtagagaa actgctgtta
     2041 agagtgtagg tgctatggaa ggaatcaaag taactttctt aaaagatatc actccattag
     2101 ctcacaatgg ttgcagaccg cctaagcgtc gtcgtgtcta agatataaga aaaatttagg
     2161 agaatattat ggcaagatat agaggaccag tagaaaaatt agaaagacgc tttggtgtta
     2221 gcttagcatt aaaaggagaa agaagactag ctggcaaaag tgcactagat aaacgccctt
     2281 atgcaccagg acaacacgga gcaagaaaag gtaaaattag tgagtatgga cttcaattaa
     2341 gagaaaaaca aaaagctaaa ttcatgtatg gagtaagcga aaagcaattc cgtcgtttat
     2401 ttgctgaagc agcaagaaga gaaggaaata caggggtatt acttatccag cttttagaac
     2461 aaagattaga caatgtggta tatagaatgg gttttgctac aacacgtcgt tttgcaagac
     2521 aacttgtaac acatggacat gttttagtaa atggtaaaag agtggatatt cctagcttta
     2581 gagtagaagc aggcgctaaa atcgaaatca tcgaaaaaag caaaaacaat cctcaaatta
     2641 caagagctat cgaacttaca gcacaaactg gaatcgttgc ttgggttgat gttgaaaaag
     2701 ataagagatt tggaattttc acaagaaaac ctgaaagaga agaagttgtc attccggttg
     2761 aggaaagatt tatcgttgag ctttactcta agtaataggg gctaaatatg agaaatatta
     2821 caacatctgc ttatacgcca acagaattta caatagaaaa cattagtgat actgtggcta
     2881 aaatcagtgc ttggcctttt gagatcggct atggaatcac cctagcccat cctttacgcc
     2941 gtttgcttta cactagcacc ataggatatg ctccaactgc gatccatatt gatggcgtag
     3001 ctcatgaatt tgatagcatg cgtggtatgc ttgaagatgt agcacttttt atcattaatc
     3061 taaaaaaact acgctttaaa attaaaggcg aatcaaataa agaaatagta gaatttagct
     3121 ttaaaggctc aaaagaaatt tacggcaaag atctaaataa tgatcaagta gaagtagtaa
     3181 ataaagacgc ctatctagca acaattaacg aagatgctga actcaaattc acattgatcg
     3241 ttgaaaaagg tattggctat gtaccaagcg aagaaattaa agagcttata aatgatccta
     3301 aatttatagc tttagatgct ttctttacac ctgtaagaga agcaacctat gatattgaaa
     3361 aagttttatt tgaagataat cctgattatg aaaaagtggt tttaaccgta acaactgatg
     3421 gacaaatcac tccaaatgaa gcttttcaaa atgctctaga agctatgtat aaacaattat
     3481 cagtatttga taaaattacc aatgttagaa gtgtaattaa aaatcaagca acaagcaatg
     3541 aactagaaaa tactaaatta ttgcaaaaca ttacagattt aaatttaagt gctagaagtt
     3601 ataattgtct tgaaaaagca ggagtggttt acataggcga gcttgctttg atgagtgtaa
     3661 gtgaacttgc agggcttaaa aatttaggta aaaaatctct tgatgaaatt aaaaacatca
     3721 tggaaagcat aggttttcct gtgggaactt ctaagcttag cgataataaa gaaatactta
     3781 aaaataaaat cgcagaatta aaagcacaaa acgaaggata aagaatgaga cataaacatg
     3841 gatatagaaa acttggcaga acttcatctc atcgtgctgc cttattaaaa aatttaacta
     3901 tagctttagt aaatagcgga aaaatcgaaa ccactctacc aaaagctaaa gaattaagag
     3961 gttatgtaga aagattgatt actagagcaa gacttggaga ttttaacgct catagagcag
     4021 tttttgcttc attacaagat aaaaacgcta ctaataaact agtaactgaa attgctccaa
     4081 aattcaaaga tcgcaatggc ggatatacaa gaattatcaa aacaagaatt cgccgtggtg
     4141 atgccgctga aatggctttc atcgaatttg tagcttaatc aaatcctagc ttttgctagg
     4201 attaatactt caattaaata tcctaaaaat aaaaagtttt aaataattat tttaaataaa
     4261 attaaattta tttattttct aaaacccttg ctaaaaattc aactacttat gctaatataa
     4321 gtttttaatt tttaatttca aggatatgtt atgcaagaaa acactcgttt acgcattgcg
     4381 atacaaaaat caggtagact ttcaaaagaa tccatagagc ttctttcaga atgtggtgtt
     4441 aaaatgcata tccatgaaca aagcttgatc gctttttcta caaatttacc catagatatt
     4501 ttacgcgtta gagatgatga tatccctggg cttatttttg atggggttgt agatttaggc
     4561 attatagggg aaaatgtttt agaagaaaat gaacttgaac gccagtcttt aggagaaaat
     4621 ccaagctata agcttttaaa aaagctagat tttggatatt gccgtctttc tcttgcctta
     4681 cctcaagaaa ataaatttca aaatttgaaa gattttgaag gcttaaggat agctacttct
     4741 tatccacaac ttttaaagcg ttttatgaaa gaaaatggga ttaattataa aaattgtatg
     4801 cttacaggtt ctgttgaagt agcccctagg gcaaatttag ccgatgcgat ttgcgatctt
     4861 gtttcaagcg gggcaacttt acaagcaaac aatcttaaag aaattaaagt catttatgaa
     4921 tctcgtgctt gtttgattca aaaagaaaat gctttaagta aagaaaaaca agccttagtg
     4981 gataaaatta tgttgcgtgt agcaggagta atgcaagcaa gagaatctaa atacattatg
     5041 cttcatgctc caaaagaaaa gcttgataaa attcaagccc tacttccagg agttgaaaga
     5101 ccgactatct tacctttagc acacgatgaa aaaaatatag ctttacatat ggtaagtaaa
     5161 gaaaatcttt tttgggaaac catggaggct ttaaaagaag aaggtgcgag ttcgatttta
     5221 gttctgccta tagaaaaaat gttaaagtga gtaaaaaatg caaattttag tatatgataa
     5281 tttggatgaa aaacaaaaag aagaagcgtt aaaacgccct gctataagtg cgaaagatga
     5341 aatttcaaaa atagtaagtt ctatcattaa agaagtgcaa gaaaaaggcg atgaagcttt
     5401 gatagaacaa gctttgaaat ttgataaggc tgaaatttca aagattaaaa tcactcaaga
     5461 agaaatcact caagcaagca atcgtttaga taaagattta caagaagcta ttttagtggc
     5521 ttatgaaaat atcaaaaaat ttcacgaagc ccaaatccca catgaaatcg ctcttgaaac
     5581 tacaaaaggc gttaaatgtg aagttttaac acgccctata gaaaaagtag gactttacat
     5641 accagggggt ttggcacctt tgttttcaac ggttttaatg ctagctattc ctgcaaaaat
     5701 tgcaggttgt gaaaaaatcg ttttagcaag tcctgcaaaa atcaatgatg ctgtgctttt
     5761 ttgtgctaag ctttgtggcg tggatgaaat ttatcaaatg ggcggtgcag gagctatagc
     5821 agctttgact tacggtaccc aaagtgtttt aaaggtggat aaaatttttg gcccaggaaa
     5881 tgcctttgta accgaagcaa aacgccaagt aagtagtgat ataaacggag cagctattga
     5941 tatgcaagca ggacctagtg aagttttagt catagctgat gatttagcta atgaaaaatt
     6001 tgtagctagt gatttgcttt cacaagctga acatggtgca gattctcaag tgattttagt
     6061 gtgtttaagt caagattttg ctaaaaaagc aagtgatgaa gtccaaagtc aattagaact
     6121 tttgcctcgc aaagaacttg caagcaaaag cattgctaat tcacgcatta tcatagctaa
     6181 agatttaaat caagccttag aaatttcaaa tctttacgcc cctgaacatt tgatcataca
     6241 aactcaaaat ccacgagaac ttttaaaagg tgtaaaacac gcaggatcag tatttttagg
     6301 agcttattcc ccagagtcta tgggtgatta tgcaagtgga acaaatcatg ttttgcctac
     6361 ttatggactt actaaaacgc attctagttt aggtttggca gattttagta aaagaatgac
     6421 cgttcaagag ttaagtaaag aaggtttttt agctttaggt aaaagtgttg aaattttagc
     6481 acaaaatgag catttagatg cgcacaaaaa tgcagtaatt tttcgtttag agagcttaaa
     6541 atgagtcaaa aaatcctttt tatagataga gatggcactt taatagagga gccaaaaagc
     6601 gattttcaaa tcgatactct tgaaaaattg cattttgaaa aagatgctat tcccactctt
     6661 ttaaaactaa aaaaatttgg atttaaattt gttatggtaa gcaatcaaga cggtcttgga
     6721 acaccaagtt ttccaaagga aaattttgaa atcgctcatg aaaaaatgct tgatatttta
     6781 aaaagttgcg gtatagaatt tcaagatatt tttatttgtc cgcattttga aaatgaaaat
     6841 tgtgcttgca gaaaacctaa aaccgctatg ttagaagagt atatcaaaca cgaactttat
     6901 gataaggagc aaagttttgt tataggagat cgtgagagtg atatgatctt ggcttcaaat
     6961 ttaggcgtgc gtggtttaaa atacggcgaa ctttcttgga aagaaataga aaatgaaatt
     7021 ttaagttctt ttagaagcgc gagttatcaa agaactacta aagaaacaga tataaaagta
     7081 aaagtatgct taaatggggg taaggttagc attaaaacag gtattgattt ttttgatcac
     7141 atgttagagc aaatcgctgt acatggaggt atagggcttg aaatttcttg taaaggggat
     7201 ttggaaatcg atgagcatca tagcgttgaa gatgtagcct tagcacttgg agcttgtatc
     7261 aaaaaagctt taggggataa aatcggcatt gcaagatatg gttttgcttt acctatggat
     7321 gagtgtttgg caagttgtgc gatggatttt tgcaatcgtc cccatttagt ctataaagcc
     7381 aaatttaaaa aatctcattt aggggcttta agcacagaaa tgatcgagca ctttttttat
     7441 tctttaagct atgctatggg tataagtttg catttaaaag ttaaaggcaa aaacgatcat
     7501 cataaagccg aagggctttt taaagccttt gcaaaagctt tgaaaatggc agtgaaaata
     7561 gaaagtgaaa atttagccag ctctaaagga gtgatatgaa aatcatcatc atcgatacag
     7621 cctgtgcgaa tttagcatct ttgaaatttt gtctggatag attaggtttt aatgcaacta
     7681 tcagtaggga tttaaaagag cttgaaagtg cggataagct ttttttacct ggagtgggta
     7741 ccgcaaaaga agcgatgaaa aatttagaac aatttaatct tattgatttt attaaaaata
     7801 ccaaaaaacc tttgcttggt atttgtttag gtatgcaaat tttaggaaat ttttccgaag
     7861 aattaaatca agaaacctta aaacttatag attttacaac tcaaaaattt aaaactaaag
     7921 aaggctttac ttttccgcat atgggatgga atcaagttca tagctctcat gctttgttta
     7981 aaggcttaga aggggcttat ttttattttg tgcatagtta ttgtgtagga cttggggaat
     8041 acactatagc agattgtgag tattcgcaaa aatttagcgc aagcgtaatg aaagataatt
     8101 tttacggggt gcaatttcac cctgaaagaa gtagcgaggc tggggaaatt ttaatttcaa
     8161 attttattaa ggatatagga tgactcaaat catacccgca ctcgatctta tagatggcga
     8221 agtggtgcgt cttgtaaaag gggattacga acaaaaaaaa gtatataaat acaatccctt
     8281 aaagaaattt aaagaatacg aaaaagcagg agcgaaagaa cttcatcttg tagatcttac
     8341 aggtgcaaaa gatcctagca aaagacaatt tgctttgata gaaaaattag ccaaagaagt
     8401 cagtgtcaat ttgcaagtag gtggaggtat acgctctaaa gcagaagtta aagctttgct
     8461 tgattgtgga gtaaaaagag tagttatagg atctatggca attaaagatg cgactttatg
     8521 tcttgaaatt ttaaaagaat ttggtagtga agctatagtt ttagccttag atacgatttt
     8581 aaaagaagat tatgttgtgg ctgtaaatgc ttggcaagaa gcaagcgata aaaagcttat
     8641 ggaagtttta gatttttata gtaataaagg cttaaaacac atactttgca cagatatttc
     8701 aaaagatggc accatgcaag gagtaaatgt aagactttac aaacttatcc atgaaatttt
     8761 tcctcatatt tgcattcagg caagtggtgg agtagcaagc ttaaaagacc ttgaaaactt
     8821 aaaaggaatt tgtagtgggg ttatcgtagg aaaagcttta ttagacggag tttttagtgt
     8881 agaagaaggg ataagatgtc tagcaaatta agttacaaag aacttgcttt agaaatttta
     8941 aaacaaagcg ataagccttt aagtgctaat gaaatttggc aaaaagctct tgaaaaaggc
     9001 ttagataaaa agctttctag tatagggcaa actccaattg ctactttagg agctagaata
     9061 tatgtggata taaaagaatt acaacacaat tctttgttta tcaaagcttc ccaaaaacct
     9121 acaacttttt ggctaaaaga aagagaaaat gaacttttaa agcttgataa taaaaatgaa
     9181 attactaacg aaaaacaaga aaaaaataaa tttcatgaaa gagatttaca cccct
//
LOCUS       DARBAR010000062         9208 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.062, whole genome shotgun sequence.
ACCESSION   DARBAR010000062 DARBAR010000000
VERSION     DARBAR010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9208)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9208)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9208
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.062"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..419
                     /locus_tag="SB815_001133"
     CDS             <1..419
                     /locus_tag="SB815_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEG0906868.1"
                     /translation="NYIRKNFSNAFVSEFHQGLKRSFSYLDEDRKKLYDFENIKEIQG
                     LLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALAYKNEQAIVFEYETC
                     QKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(402..1115)
                     /locus_tag="SB815_001134"
     CDS             complement(402..1115)
                     /locus_tag="SB815_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HEG0906869.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLSYQRILKLKAKA"
     gene            complement(1117..1806)
                     /gene="dut"
                     /locus_tag="SB815_001135"
     CDS             complement(1117..1806)
                     /gene="dut"
                     /locus_tag="SB815_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HEG0906870.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFTWKHWKNISSLTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            complement(1843..2406)
                     /gene="ciaI"
                     /locus_tag="SB815_001136"
     CDS             complement(1843..2406)
                     /gene="ciaI"
                     /locus_tag="SB815_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HEG0906871.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSVSYANNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQTDDKDINASMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            2481..2888
                     /locus_tag="SB815_001137"
     CDS             2481..2888
                     /locus_tag="SB815_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906872.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     FDKSAKIYALELFWLKFTNNALGLSKKLEFYKK"
     gene            2960..3742
                     /gene="kpsM"
                     /locus_tag="SB815_001138"
     CDS             2960..3742
                     /gene="kpsM"
                     /locus_tag="SB815_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide transporter KpsM"
                     /protein_id="HEG0906873.1"
                     /translation="MLNVIYALFFRELKTRFGKNRYLGYIWVVGEPMSIVLLVTIIGT
                     IVREYHHQVMPEGISIFMFLISGIMPFFMFRSIVTQLMNGTQANLALFAYKPVKPIHV
                     FIARTLLEFCIYFVIFIIILFFAGWFFRLDVFPVHLLGVLFCIFLLICSAFALGICFA
                     IIWHFVEPLRTLLAYFSIVFYWTSGIIFPTWLTPRPLLDIFYYNPLLHIFELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAVKKE"
     gene            3739..4401
                     /locus_tag="SB815_001139"
     CDS             3739..4401
                     /locus_tag="SB815_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0906874.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGYNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKE
                     LQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQG
                     KV"
     gene            4401..5519
                     /locus_tag="SB815_001140"
     CDS             4401..5519
                     /locus_tag="SB815_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HEG0906875.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLSSTSTASEDLNYLKGYIESSDMLKILDEKIKLKNL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLKVEVEGFTPKSAHLIAQA
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     ETKASLVAQIEANLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            5521..7179
                     /locus_tag="SB815_001141"
     CDS             5521..7179
                     /locus_tag="SB815_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEG0906876.1"
                     /translation="MKKILILLFSCILCFGAVDVSQIISAEDQGSATTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGNVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKRGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            7190..8137
                     /locus_tag="SB815_001142"
     CDS             7190..8137
                     /locus_tag="SB815_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEG0906877.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLATNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTSEDVLIAISNSGETEE
                     ILKIIPAIKKREIPLIVMCGKKNSTLVKQGDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKASDKPRFDFKAKEIMSINPKVVDA
                     DAMASEAEGIMLKHKIKEIIVGKEEKVVGIIQLYAIGNV"
     gene            8137..>9208
                     /locus_tag="SB815_001143"
     CDS             8137..>9208
                     /locus_tag="SB815_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG0906878.1"
                     /translation="MPLLSVIIPFGLSKERPYIEERVLQKAKFFQSDENIEFIFVEGY
                     SSKDHELKNFIQANHHIYLKDMDQKAFSQGRCRNLGASYAHSNVLLFLDVDCYISLDN
                     FEKILKLIQIKNISQNINALIVLPVVYLNKEANEKLKQYDDKFWDILIQEDLFTAKNT
                     WVKFFAPSSTSSIVINKHQFLRLGGNDENFIGHGYEDFDLFARILKACVSFEKMPTNL
                     SYDARNWNFFNFKGFRSWFSLLGYEACFYGIYIYHFYHIEPNQNAYMQNKDKNHQLFY
                     KHLKNIKKHDLKPLQVFKAKGEKVLMLFKDQNYDFKDISVYVGEIIYKNISDFFIAKE
                     LKYELLLDFLQQEKITKIFLDAS"
BASE COUNT         3234 a         1141 c         1593 g         3240 t
ORIGIN      
        1 gaaattatat aagaaaaaat ttctctaatg cctttgtgag tgaatttcat cagggtttaa
       61 aaagaagttt ttcttatctt gatgaagaca ggaaaaaact ttatgatttt gaaaatatca
      121 aagaaattca aggacttctt atttgcccta aaaatgaaag cttgattgct agagcggtga
      181 aaatgaaagg tttgctttta agcacggcac aaagaaaaga gcttttaaag ggtgattgtg
      241 ttttaggtgg taaaatagca cttgcatata aaaacgaaca agctattgtt tttgagtatg
      301 aaacttgtca aaaattacct aaaaatttca aagaagagtg tagaatagct aaaattccaa
      361 gacttttaag agcttattta tataatcata aaatcgatat ttcaagcctt agcttttagt
      421 tttaaaattc tttgatagct taaatgtgtg agaaaaatca caaaaaatac ttgcaaaaaa
      481 agtcctaaaa gtggtactga tgagagtaga taaaaacaaa gagtgctaaa tttaaactct
      541 aaaggcgaaa aatcggaatg aaaattttta aaactttctt tgtctaaaat cgtgcttgta
      601 acatcaatca ttaaaagttt gtgaaagaga taataaaaag caagataata tacaaaaata
      661 ttgataaaag gtaaaaataa agccaaggtg caaagcaata aaatccctat aaattttata
      721 aatattttaa aaatttcaaa gatagttttt aaggttgaaa cttcgtttgt attatcataa
      781 tggtaatatt tttggttgat ttctttagcg ataaaaggag taagaaaaga agtgataaaa
      841 agggctaaaa aaaccgaagc aaaaacaaca ataaaacctg aaaataaaaa acttatgatg
      901 gtgattaaaa tttgtacaaa atgaagagca taaaaccacg cccaaaacga atcttctcca
      961 acgctaaata aagaattaaa ataatcaagc aaggccgaaa agccaagtac tcctaaaaaa
     1021 agcatcagta taaggctaaa aatcaaagga attaaggcaa attttaaaaa tttaagactt
     1081 aaaaaatctt tgattgcaag ttttaaaata tccaaattat gcctttttgt agcattcttc
     1141 tagtttttta taaatagtat caaaatcaag ctcttgttct aaaatttgag ctaaaacttc
     1201 attgtcttct ttgccattcc aagttttttt atagctgcca tctttgtaac cattgttttg
     1261 tctaaaaata tttaaaacat ttttacctat gtaggtctta taaagaattt caagatttag
     1321 cccacattta atagctaggg taaaataggt tgaaagtaat tctccaagat taaatccaaa
     1381 accactgcat ttatggataa taagctctat atcatttaaa atgccataaa tatcaccctc
     1441 attagggtat tcttcttctt tgcaaaaatc ttgaaacacg cttacagcat taacttctgt
     1501 ggctatagct ttgaaatctt tattgttttt atcgcgatac tcttcaagta aaagacttaa
     1561 aataaaatgc caaatatcga caatctctat acgcacattt tcccaatttg ttagacttga
     1621 aatatttttc caatgtttcc atgtaaaaga gtctataagt tctgcacatt ccatataaat
     1681 acagcgtctc caactgatca gttttccttc tttggtgtag ccattttccc aatttaagcc
     1741 gtttgtttca tcgttgagtt tttgttggag tttgagcata ttttctaaaa tttcgatatt
     1801 tgtcatttaa aaactccttg ataattttta atattatatg atttaagcgt aaagatttaa
     1861 actatcatct gtcttatctt gattttcctt ggctttttct tgctgttttt caagttgttt
     1921 tttcatttgt tctaaaactt catcaagaag ttttttgcta tcttcaagca tggaagcatt
     1981 gatatcttta tcatctgttt gattttgttt tagtaaatca ctgagtttat ttgtaaaatt
     2041 attcataata gcattttgat ggttttcatc atttggtgtt ggtagaacat ttgccatttg
     2101 catagctgat tctataattt cttttggctt taactctccg actttagaat ttgctaaaaa
     2161 gtctttgatc ataggttcaa cttctttcat agcattttta atctcatcaa gatcattttg
     2221 tgtgagctta gagccttcaa aagtaaagct aaagccatac tgacgcttaa gattaagagt
     2281 tttaccttct tcattatttg cataactcac gctttgattg tcatacatag ataaggctaa
     2341 atgtttgcca ctttttgttg tataatccat cgaaaaactt tggtttttgc tagcatcaat
     2401 ttgcatttct tccccttata tttatagttt aaattaaaaa tcggttattt ttaaaaatat
     2461 tttagtataa tttttacaat atggatgaaa gaattttaga atttataaaa aatgagcagc
     2521 ttttatcttg ggctatgatt gatgaaaaag gtgtttatac agctagtgct ttttatgctt
     2581 ttgatgagaa gaatttagct tttattatcg cttcgcatga agatactaag catataagat
     2641 tagccagtga aaattcaagt atagcactta atatagccaa agaaagtaaa atagcttttt
     2701 taaaaggtgt gcaagctaag gccgagttta aaatggcaag caaggagcaa atgaaaattt
     2761 atttttctaa gtttcccttt gctaaatttg ataaaagtgc aaaaatttat gctttagagc
     2821 ttttttggct taaatttact aacaatgctt taggacttag taaaaagctt gaattttata
     2881 aaaaataaat ttttatgatt ttgtttaaaa aaatgagtta tgattatagt ttatgtaaaa
     2941 ttgttaggta taaaaataaa tgttaaatgt aatttatgct ttatttttta gagagttaaa
     3001 aactagattt ggtaaaaatc ggtatttagg atatatatgg gtagttgggg agcctatgag
     3061 tattgtactt ttagtaacta tcataggcac tattgttaga gaatatcatc atcaagttat
     3121 gcctgaggga atttctattt ttatgttttt gatttcaggc attatgcctt tttttatgtt
     3181 tagaagtata gttacccagc ttatgaatgg aactcaggca aatttagctc tttttgccta
     3241 taaacctgta aagcctatac atgtatttat tgctagaact ttacttgagt tttgtattta
     3301 ttttgtaatt tttattatca tacttttttt tgcgggatgg ttttttagac ttgatgtatt
     3361 tcctgttcat ttgcttggag ttttgttttg tatttttttg cttatatgtt cagcttttgc
     3421 tttgggaatt tgttttgcta ttatttggca ttttgtggaa cctttaagaa ctttgctagc
     3481 ttattttagc atagtgtttt attggacttc gggaattata tttcctactt ggctaactcc
     3541 tcgtcctttg cttgatatat tttattataa tcctttgctt catatttttg aacttttaag
     3601 atttaatttt tttgaaaatt atcctttgca agatgaatat agttattttt atgctatatt
     3661 ttggatttta cttgttttat ttatagggct ttttatctat tactataata gacaagcttt
     3721 aacggcggta aaaaaagaat gataaagtta attaatctaa caaaatctta tcctttattt
     3781 agtggtggaa gacattatgt ttttaagaat tttacttttg agtttcctga aaattgtagc
     3841 ataggtttga tggggtataa tggagcgggt aaatctactc ttatgcgtct tttaagcggg
     3901 gcagaacttc ctgatagtgg taagataatt actaataaaa aattatcttg gccattgggt
     3961 ttaaatgggg cttttcaagg ttctttaaca gctagagata atgctaaatt tgtagctaga
     4021 gtatatggtt ataaaggaaa agaactccaa gaaaaagtaa aatttgtgga agattttgca
     4081 gaacttggga aattttttga tgagcctatg aagacttatt cttcgggaat gagtgctagg
     4141 atagcttttg gacttagtat ggcctttgat tttgattatt atttgattga tgaagcagga
     4201 gctgttggag atcctgcttt tagggaaaaa agtgtgaaat tatatagaga aagattaagc
     4261 aaatcaaaag tgattatggt atctcataat gtagctgaaa ttaaagaatg gtgtgataaa
     4321 ataatttata tgaaaaatgg acaaattacg gtttatgatg atgtagatga aggaatagct
     4381 gtatatcaag gaaaagttta atggaagaaa ataaaacttt attagaaaaa atcaaagatt
     4441 taagtatatt tgattctttt aaaattgttt ggtttataat gatttttgtt gtgatttatt
     4501 atacattgat tgcagcacca agatatgtaa gcacgatgat tttagatgtt agatcaacaa
     4561 gtggagaaag tgctcaaaca agtggaatct tgtctttgct tagtagtact tctacagcaa
     4621 gcgaagattt aaattatcta aaaggttata tagaatcaag tgatatgtta aagattttgg
     4681 atgaaaaaat caaacttaaa aatctttatc aagagcaaca tatagattta ccttttaaaa
     4741 tttgggattc aagctcgata gaatcttatc ttaaatacta ccaagcaaga gttaaggttc
     4801 atacggatga aaccactaaa cttttaaaag ttgaagtaga gggttttaca cctaaatcag
     4861 ctcatttgat tgctcaagct attatgcaag aaagcgaaaa atttatcaac gaaatctctc
     4921 ataaagcagc tagagagcaa atggcttttg ctgaaaatga agtgcaaaaa tacaaagaac
     4981 gttatcaaaa agcacaaaat gatttgattg cttttcaaaa taaatatgga gtttttgatc
     5041 ccttgaaaca agctgaaact aaagcaagtt tagttgcgca aattgaggct aatttagctc
     5101 aaaaagaagc taaactttta actttacaaa gctatatgaa tgatgcagca cctgaagtag
     5161 tagcacttaa agcagaaatt gaagcgatta aaaaacagct tttaagggaa aaatctaaaa
     5221 tttcagctaa caattcttct caaaagctta acgatttggc tgctaaattt caggatttaa
     5281 ctatagaagc tacttttgcg caaaaagctt atgaagcagc tttaaaagct tatgaaagtg
     5341 ctagaataga agcattaaga aaaataaaac aacttgtcat catccaaagt ccagatattc
     5401 cagaaagcgc aaaatatcct gaaagaattt atgatatttt aacagcattt attgtattat
     5461 ctttgatttt tgggattgtt aaatttatta aaatgataat agaggagcat aagtattaaa
     5521 atgaaaaaaa tattaatttt actttttagt tgtattttat gttttggagc tgtggatgtt
     5581 tcacaaatca tttcagcaga ggatcaaggt tctgctacaa ctagcataga tcaaaattta
     5641 agctcaaatt atgatatagc aaataaagaa aataatctta caaaaattca tcaaatttta
     5701 gtatttggcg ctcatctttt taatggaaat tttaaaaatt acaatcaaag agtttataac
     5761 ccagattata agattgcagt tggtgatcaa atcagtctta aaatttgggg agctgttgag
     5821 ttttcgcaag ttttagtggt ggattctcaa ggaaatattt ttatccctaa agtaggagct
     5881 gtaaatttac taggtgtgaa aaatagcgcc cttgtaagtg ttataaaagc acgtgttaat
     5941 aaaatctata aaagcaatgt ttttgtttat gcagatatga atgcttatca aaatgtcagt
     6001 gtttttgtaa caggaaacgt taatgctcca ggactttatc aaggacttag ttcggattca
     6061 gtgatccagt atcttgataa agcagggggt ataaatttag aatatggaag ttttagagat
     6121 attcaaattt tgcgtaataa cagcgtgata aaaaatattg atttatatga ttttttacta
     6181 aaggggcaaa tggatctttt tccttttaga agtggagatg ttattttagt aggaaatgtt
     6241 caaaattacg cttttgttaa cggtgatgtg caaagacctt ttcgttttga actttcaaat
     6301 gatattaaaa ctttagctga cttagctaga gtatcaggtg ctaaacctat cgtaactaat
     6361 gctatcgtaa aaagttatgg tgaagatcat aaacttgatg tcagtgctta taataaaatg
     6421 caattttcaa aagttttact tagaacggga gatgaggtag aatttcaccc tgagtatgtt
     6481 tctgaaaata taactataag tgtaaatggc gagcataatg gtttaaaaac tttagttgtg
     6541 ggtaaaggaa cgactttaga agatatttct aaattaatta aagctaatcc acaatcaaac
     6601 atgcaagctt tacaagtgtt tagaaaaagt gtagctagaa ctcaaaaaga acttatcaat
     6661 gctcagctta aagagcttga aactctagct ttaactagtg gttctgttac agctcaaggt
     6721 gcagctataa gagctcaaca agcaaaaacg attttagaat ttatccaaag agctaagcaa
     6781 gtagagccta agggtcaaat tgtcattgat aatccaaagt cttataattc ggttatttta
     6841 gaagatggtg atactattaa tgtaccaagt aagaataatc tcatcatagt tcaaggtgag
     6901 gtttctttac ctggagcttt tgtgtatgat aagggcaaag atttaagata ttatatcaat
     6961 cttgcaggag gttatggaga aagagcggat acttcaaaag ttttggtgat acgaagcaat
     7021 ggaaaagctg aaaaatatca tagtggtata gatatgaaac gaggcgattc tgtgttggta
     7081 ttgccaaaag tagatagtga gaatttacaa attttttcaa tgttgactca aattctttat
     7141 caaattgcta tcgcaaccaa tgttgtgctt aatctttaag gtttaaataa tgaatactct
     7201 tgaaatagcc aaagaagttt ttgaaaaaga agcgcaagct attttggatt tggctacaaa
     7261 tttagatgaa aattttaatc aagctgtaaa tttgatgtta aataccaaag ggcgttgcat
     7321 agttagtggt atgggtaaat caggtcatat aggcgctaag atagcagcta ctttagcaag
     7381 cacaggaaca ccaagctttt ttatccatcc aggagaggct ttgcatggag atcttggaat
     7441 gttaacttcc gaagatgttt taattgctat ttcaaattca ggagaaactg aagaaatttt
     7501 aaaaatcatt cctgctataa aaaagcgtga aattccactt atagtaatgt gtggtaaaaa
     7561 aaattctacc cttgtaaagc aaggcgatat atttttaaat atagccgtgg aaaaggaagc
     7621 ttgtcctttg cagcttgctc ctatgtcttc gacaacagca actttagtta tgggggatgc
     7681 tttagcggct gctttgatga aggtaagaaa tttcaagcct gatgattttg ccctttttca
     7741 tccaggggga agtttgggac gtaagctttt aaccaaggta aaagatctta tggtttcaag
     7801 taaccttcct atagtgcatc ctgataccga atttaacgat cttgttgatg tgatgactag
     7861 tggaaaacta ggactttgtg tggtgcttga aaatgaaaaa ttagtgggta ttatcactga
     7921 cggggatttg cgtcgtgctt taaaagcaag cgataaacca aggtttgatt ttaaggccaa
     7981 agaaatcatg agtataaatc ctaaagtagt cgatgctgat gctatggcaa gtgaagcaga
     8041 agggatcatg ttaaaacata aaatcaaaga aattatagta ggaaaagaag aaaaagttgt
     8101 aggtattatc cagctttatg ccataggaaa tgtttaatgc ctcttttatc tgttattatt
     8161 ccttttggat taagtaaaga acgtccttat atagaagaaa gagttcttca aaaagctaaa
     8221 ttttttcaaa gcgatgagaa tatagaattt attttcgttg aaggatattc atctaaagat
     8281 cacgagctta aaaattttat ccaagcaaac catcatattt atcttaaaga tatggatcaa
     8341 aaagcttttt ctcaaggaag atgtaggaat ttaggagcaa gttatgcgca ttcaaatgtt
     8401 cttttgtttt tggatgtgga ttgttatatt tctttggata attttgaaaa aattttaaaa
     8461 ctaattcaaa ttaaaaatat ttctcaaaat atcaatgctt tgatagtttt acccgtagtg
     8521 tatcttaata aagaagctaa tgaaaaatta aagcaatacg atgataaatt ttgggatatt
     8581 ttgatacaag aggatttatt tacagcaaaa aatacttggg taaaattttt tgccccaagt
     8641 tctacttcaa gtattgtgat aaataaacat cagtttttaa gattgggcgg aaatgatgaa
     8701 aattttatcg gacatggtta tgaagatttt gatctttttg ctagaatttt aaaagcttgt
     8761 gtgagttttg aaaaaatgcc tactaattta agttatgatg ctagaaattg gaattttttt
     8821 aactttaaag gttttagatc ttggttttca ttgcttggtt atgaggcttg tttttatgga
     8881 atttatatat atcattttta tcatatagaa cccaatcaaa acgcttatat gcaaaataaa
     8941 gataagaacc atcagctttt ttataagcat ttaaaaaaca tcaaaaaaca cgatttaaag
     9001 cctttgcaag tttttaaagc caaaggtgaa aaagttttaa tgctttttaa agatcaaaat
     9061 tatgatttta aggatattag tgtttatgtg ggagaaatta tctataaaaa tataagtgat
     9121 ttttttatag ctaaagagtt aaaatatgaa cttttgttgg attttttaca acaagaaaaa
     9181 atcactaaaa tatttttgga tgcaagta
//
LOCUS       DARBAR010000063         9141 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.063, whole genome shotgun sequence.
ACCESSION   DARBAR010000063 DARBAR010000000
VERSION     DARBAR010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9141
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.063"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..594)
                     /locus_tag="SB815_001144"
     CDS             complement(<1..594)
                     /locus_tag="SB815_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG0906879.1"
                     /translation="MNFKELISKRRACKLFNDKKINEKDLHFILESGVLAPSSHGFEP
                     WKFVVLEQKEHNLKLSTLCYNQQNVASASHNIIFLARKDIQSKDEFAQKQVRRFSGSS
                     EENFQKILEIYTHKTNAMNDNELYHYAQLQCYLAMMQMSLAAMSLGIDSCIIGGFEKA
                     KVDDFLHLTYPFETAVILSLGYKAHEPKYSTQRLNFNE"
     gene            complement(658..1083)
                     /locus_tag="SB815_001145"
     CDS             complement(658..1083)
                     /locus_tag="SB815_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG0906880.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKNFLDKIQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVVDEALRGKGIGQAFLKKIQIWAKDQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(1095..2183)
                     /locus_tag="SB815_001146"
     CDS             complement(1095..2183)
                     /locus_tag="SB815_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEG0906881.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQSKTDK
                     DLPFLLENLLNQYDFITLFTSPLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     NIKLTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHEWLGISESILENNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            2282..5035
                     /gene="ileS"
                     /locus_tag="SB815_001147"
     CDS             2282..5035
                     /gene="ileS"
                     /locus_tag="SB815_001147"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEG0906882.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYETMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDGGCYDETLRAKELLPSHLLEEFIGLHIFKANEKILELLGAKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYNAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLKV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            5029..5139
                     /locus_tag="SB815_001148"
     CDS             5029..5139
                     /locus_tag="SB815_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906883.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            5136..6497
                     /gene="gatA"
                     /locus_tag="SB815_001149"
     CDS             5136..6497
                     /gene="gatA"
                     /locus_tag="SB815_001149"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEG0906884.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            6507..7964
                     /gene="guaB"
                     /locus_tag="SB815_001150"
     CDS             6507..7964
                     /gene="guaB"
                     /locus_tag="SB815_001150"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEG0906885.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVNALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            7961..8134
                     /gene="xseB"
                     /locus_tag="SB815_001151"
     CDS             7961..8134
                     /gene="xseB"
                     /locus_tag="SB815_001151"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEG0906886.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            8127..8903
                     /locus_tag="SB815_001152"
     CDS             8127..8903
                     /locus_tag="SB815_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEG0906887.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGVNLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            8915..>9141
                     /locus_tag="SB815_001153"
     CDS             8915..>9141
                     /locus_tag="SB815_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEG0906888.1"
                     /translation="MRKILLQIFIFSVLFIVTFTINRILMQNSFIPTGLISDKNEIFL
                     MYLLGVFHDIRFLSAAFLPFLLCGFLSLIFS"
BASE COUNT         3197 a         1217 c         1734 g         2993 t
ORIGIN      
        1 ttcattaaaa tttaagcgtt gagtagaata ttttggttcg tgggctttat atcctaagga
       61 taaaattaca gcagtttcaa aaggataagt taaatgaaga aaatcgtcaa ccttagcttt
      121 ttcaaagcca cctattatac aagaatcaat acctaagctc attgcagcta gcgacatttg
      181 catcatagca agatagcatt gaagttgtgc gtaatgatag agttcattat cattcattgc
      241 attggtttta tgagtataaa tttctaaaat tttttgaaaa ttttcttcgc tagaacctga
      301 gaaacgacgc acttgttttt gtgcaaattc atctttgctt tgaatatctt ttcttgctag
      361 aaaaatgata ttatgactcg cacttgctac attttgttga ttgtaacata gggttgagag
      421 tttaagattg tgttcttttt gttctaatac tacaaatttc caaggctcaa atccatgtga
      481 gcttggggct aagactccac tttctaagat aaaatgcaaa tccttttcat tgattttttt
      541 atcattaaaa agtttacaag ctctgcgttt tgaaattagt tctttaaaat tcattttatt
      601 ccttaaaatc aaaaataata atattaatta taaaatgcaa agcttaatca aaaaatatta
      661 tagtttgata tttttcttaa aaacaaaacc ggatttttca aaacccattt tttggatata
      721 aaattcatga gcttgtgttc taaaaaaact tgaacttagt tctaattctt catatccttg
      781 atcttttgcc caaatttgga tttttttcaa aaaagcttga cctatacctt ttcctcttaa
      841 agcttcatct acgacaaaat cacaaatata aagacaatga ttatgataaa gtacattaaa
      901 gggcatgact ccacaagctg ctttgtagct tccctcattt tcataggcaa aaagtttata
      961 atgttgagtt tgtgtagcaa gttggatttt gtctaaaaaa tttttcaaag ataggttatt
     1021 tcttaattgt tttatcaagg gataaatttt ttccaagtct tcttttagct taatttcttt
     1081 catttttaaa tcccttaaat ttcaaaaatc tcaggtttta attttaaaag taggcaaaaa
     1141 gttgccaaaa cagcttgttc ttgcataaat tcacgatctc catctaaata aagcgtttct
     1201 tggataaaag ttccatctct aaacattgca cctatataaa tagtgcctga ttttattttt
     1261 ccctcatctt tttcgccaac tactccgcta atagctaagg caaaatcagg attagctgtt
     1321 ttaaaaatac cttttagcat aaaataaaca caacgttcac tgtattcgcc attattttct
     1381 aagatgcttt cgctaattcc aagccattcg tgtttgatgc ggttggaata acttacaata
     1441 gatccttcaa aaatttcact tacacctgaa attttggtta aggtgcttgc acaaagtccg
     1501 cctgtgcaac tttcagcaaa agaaattttt aatttttttt ctaaaagttt agagcttata
     1561 aaatgtatag gatctttacc taaaaacacc ttttgtccaa aaagattttt tacgctattt
     1621 aaaaaaccat caagttttcc aaaattagcg caagtggcct taataagcac aagattatct
     1681 aaaagcttgg ttaattttat atttatctca taagattttg ttagggtttg cagtagtaat
     1741 atagcgcttt catcatccat gccaaaaatg caaaaatatg caaaatttaa ttttatatgc
     1801 ccaagaagat tgggtaattt ttcgcttgga tttattttaa cgacattgat ttttgaattt
     1861 gaaaaattac acacaaagct atttttacta aattctgctt tatctggaac caaggtatca
     1921 tcttttaaga taagattatc atcatttaaa gttgctaaaa ttttagcaac agtcgcataa
     1981 tgcaaagggc ttgtaaataa agtgataaaa tcatactgat ttaagaggtt ttcaagcaaa
     2041 aagggtaaat ctttatcggt tttactttgt atgcgaattt cgttgatttc tttaaatttt
     2101 tcttcataag ttctataaat ataatttttg aatttttcgt ttatagtaag ctcatctcct
     2161 ataagataaa gcaaatgttt cataaatttt cctttttttc ttataattat agccaaaaac
     2221 aaagtagaaa ttaaagctaa tttgagtaga atttaagatt attaaaaatt aggtggaaaa
     2281 aatggactac aaagaaactc tacttttgcc cagcactact tttgctatgc gggcgaattt
     2341 agcggaactt gaaccgcaaa gatttaaaaa atggtttgag caaaattatg cttatgaaac
     2401 aatgaaagaa aatcgcaaaa atgcgaaaaa aagttttact ttacacgatg gcccccctta
     2461 tgctaacgga catatccata taggacatgc tttaaataaa attttaaaag aaactattat
     2521 caaaacacat tattttaaag gtgagagtgt gcgttttact ccagggtggg attgtcacgg
     2581 tttgcctata gaacaacaag tagaagtaaa gcttggagaa aagaaaaaaa gcttaagtaa
     2641 aaaagaaatt cgtgagtttt gcagacaaca tgcgagtgaa tttgtagata tccaaagaga
     2701 agaatttaaa aatttaggca ttattgcgga ttgggataag ccttatttaa ctatgaaatt
     2761 tgagtttgaa gcagcgattt atagaacttt atgtgagatt gctaagaaag gcttactttg
     2821 tgagcgttct aaacctgttt tttggagttg ggcggcaaag tcagctttag cagaagctga
     2881 ggtagaatat caagataaag aagattattc tatctttgtg gcttttgatt tggatgtaaa
     2941 agcttgcgaa aaattaggtg tttcaaaagc aagcgcagtg atatggacaa ctacgccttg
     3001 gactttagtg gctaatcaag ctatagcttt aaatcctaat gaaaattatg tgatcaccaa
     3061 agaaggtttg atttttgcaa gtgctttact taaaagtatg gtagaaaaag gacttacaag
     3121 tggagaaatt caaaaagaat taaacgcaaa agaatttgaa aaacttgaag ctatcaatcc
     3181 tttaaatgga agaaaatctg ttttaattat gggtgagcat gtattgatgg atggtggaag
     3241 tggacttgtg catactgcac caggacatgg cgaagatgat tactatgctt gtttgaaata
     3301 cggtattgaa gttttaatgc ctgttgatga tggtggatgt tatgatgaaa ctttaagagc
     3361 taaagagctt ttgccttctc atttgcttga agagtttata ggtcttcata tttttaaggc
     3421 taatgaaaaa attttagaac ttttaggcgc aaaactgtta cattcttcta aatttataca
     3481 ctcttatccg ttttgctgga gaacacataa acctgtaatc tatagagcta ctaaacaatg
     3541 gtttatttta atggatgagc caaaacttca aggaaaaacc ttaagagagt gtgcaaaaga
     3601 acaactttta aaaacaactt tttatccgca aagtggggta aaaagaatag gttctatggt
     3661 ggaaaatcgc ccagattggt gtatttcaag acaaagggac tggggaacgc ctatagcctt
     3721 ttttagagat aaaaacacta aagaagtcat ttttgatgat gagctttttg actttgtagc
     3781 ggctattttt gaaaaacacg gcgctgatgc gtggtgggag tttgaaatca aagatttaat
     3841 tcctacaaat tcaaaataca acgctgaaaa tttagaaaaa gtatatgata ttttagatgt
     3901 ttggtttgat agtggaagta cttttaatgc ggttttaaat agcggacttt atgacgcagg
     3961 agaaaaaaga gcaagtatgt atttagaagg aagcgatcaa catcggggtt ggtttcaaag
     4021 ctctttgctt gtaggtacag cgatcaatga aagtgcacct tatgaaagca ttttaactca
     4081 tggttttacc accgatgaaa aagggcaaaa aatgtctaaa tctaaaggca acgtgatcgc
     4141 tcctgaatat gtagcaaaaa cctatggagt tgaaatttta agactttgga tacttttaag
     4201 tgattattca agtgatttaa aaatttcaga taatatctta aaacaagtag gcgaacaata
     4261 ccgcaaaata agaaacacta taagattttt acttgccaat accaatgatt taaaagattt
     4321 aaaagttaaa gaatttagtt ttattgataa atggatatta agccgtgcaa ctaaagtttt
     4381 taaagcaagc aaagaggcat tttttgctta tgaatttgct aaaggtttta gtttgctttt
     4441 aaatttctta agtgcggatt taagtgggat ttatcttgat atcagtaaag atagacttta
     4501 ttgtgatagc gaaaatgccc aaagaagaaa atctgctcaa gtggctatgg ctttgatagc
     4561 aaaagagctt ttaaatttac ttgctccaaa tttaagctat agtgtagatg aggctttaga
     4621 acatgctaat gttttaatca aaggcgatgc aaaagatgta tttgatctaa gtttaactca
     4681 ggattttgat tatgattttg gtatagatga tacattttta atgagtgcta gagagaaatt
     4741 ttttgaacag attgatatac ttaaaaaaga taaaatcatt aaatctactt tggaattaaa
     4801 tttaaacatc agttttaata aattcccaaa tgaggaatta gccgattggt ttatggtaag
     4861 tcaaatcagc aatgaaaatg aagaaatttt ggctgaattt gaagtagaga atgagaaatt
     4921 taaaatcacc aaagcttcac tttgtaaatg cccaagatgt tggaaacttc aaagtaaaga
     4981 tgaagaaaca ccttgtttaa gatgtgaaga agttttaaaa gggattcaat gctagaaaat
     5041 cctattccaa atagcattat catcacaact atagcggtgg ttttggcttt tagtgcttta
     5101 gcagtatttt tgatcaaaaa aacaaaggaa aataaatgat aactttaaaa gaagctttaa
     5161 aatactccaa agaagaactt gaaaatttaa aaaaagaact caatgaaaaa gcaaaaaaag
     5221 aaaaaaaaat aggtgcttat atcgaacaat ttttagataa agacttaagt gtttcaggtg
     5281 aaggtgtgcc tgtagctata aaagataata tcagcgtaaa gggctgggag cttactagtg
     5341 cgagtaagat tttacaaggt tatatcgctc cttatgatgc aagtgtgatt gttaatttaa
     5401 aagctaatgg tttttctcct tttgggcgtt gcaatatgga tgaatttgct atgggaagtt
     5461 caacagcgag ttcttattat ggcaaaactt taaatccttt aaattttgag cgtgtgccag
     5521 gtggttcaag tggtggaagt gctgctgcgg tagcgggtgg cttggctttg gcaagtttgg
     5581 gttctgatac aggaggatct gtacgtcagc ctgcagcttt ttgtggttgc gtaggattta
     5641 aaccgagtta tggaagagtg agtcgctatg gcttagcttc ttattcttca agtttggatc
     5701 aaattggggt tttaacgcaa aatgtagaag atgcggcaat tttatatgat gcgatcgcag
     5761 gatatgataa aatggatagc acgagtgcaa atatcgagtt tatcaaaacc gctccaaatt
     5821 taaatgcaaa taaaaaatta aaaattgcag tgattgaaaa ttatgtcaat gatgcagata
     5881 gtgaagtaaa aaacgcactt ttaaaaacca tagatatgtt aaaagctaat ggacatgaga
     5941 ttgtatataa aaatttgctt gattctaagt ttgatatcgc agcgtattat atcatcgcaa
     6001 cagctgaagc aagtgcaaat ttaagtcgtt atgatggggt gcgttatggc aagcgttctg
     6061 aaaatatcca aaatttaaaa gaaatgtatg taaatacacg cagcgaaggt tttggagaag
     6121 aagtaaaaag aagaattttg ttaggaactt ttgttttaag cagtggatat tatgatgcgt
     6181 attatattaa agcacaaaaa gctagagctt ttattaaggc aaaatatgaa gaaattttgc
     6241 aagattgtga tcttattttt atgcctgtaa cgcctacaac ggcttttaaa tttgatactc
     6301 aaaaaagccc tatgcaaact tatttagaag atgtttatac tatctctgta aatttagcag
     6361 gacttggagg cattagtgtg cctgttgcaa aagataaaga agggcttaat atatcagcac
     6421 aactgatttg caaagcttat gatgaacaaa ccttattaga tggggcttta agtttagaac
     6481 aaatgattaa acattaagga tgaaagatga aaattgtaaa aagagcttta acttttgaag
     6541 atgtattatt gcgtcctggg tattctgaag ttttacctaa ggaagtaaaa attcacacta
     6601 aattaacaaa aaatatcact ttaaatatgc ctttaatctc tgcggctatg gatacagtta
     6661 ctgaacacag ggctgctatt atgatggcaa gacttggagg gcttggagtg attcataaaa
     6721 acatggatat agcctcacag gttagagaag taaaaagagt gaaaaaaagc gaaagcgggg
     6781 tgattatcga tcctattttt gtaagtccta aggcaagtgt tgcggaagct ttagaaatta
     6841 tggcagagta tagaatttca ggtgttcctg tagtagatga agataagaaa ctaataggca
     6901 tacttaccaa tcgtgattta agatttgaga gtgatttttc aaatttggtt gaaaatgtta
     6961 tgactaaaat gcctttaatt actgctccaa agggttgtac tttagatgat gcggaaaaaa
     7021 ttttcagcac caacaaagta gaaaaacttc ctatagttga tgaacaagga cgcttggaag
     7081 gacttatcac tataaaagat cttaaaaaac gcaaagaata tcctgatgcc aataaagata
     7141 attttggcag attacgcgtg ggtgcggcta taggagtagg gcaaatggat cgtgtgaatg
     7201 ctttagttga agcaggcgtt gatgttgttg tgcttgattc tgcgcatggg cattctaagg
     7261 gtattattga tacagtaaaa gcaattaagg ctaaatatcc aaatttagat cttatcgcag
     7321 gaaatatcgc cactgcagct gcagcaaaag cactttgtga agcaggagta gatgcggtta
     7381 aagtaggtat tgggccagga agtatttgta ctacacgtat tgtttcaggt gtgggcgtgc
     7441 ctcaaatttc agccattgat gagtgcgtgg aagaagcaaa taaatttggc gttcctgtga
     7501 tagctgatgg cgggattaaa tattcaggtg atatcgcaaa agctttagct gtaggtgcga
     7561 gttctgttat gataggatcg cttttagctg gaacagatga gagtccagga gagcttttta
     7621 cttatcaagg aagacaatat aagtcttatc gtggtatggg ctcacttggg gctatgcaaa
     7681 agggaagttc ggatagatat tttcagcaag gtactgctca agataaactc gttcctgaag
     7741 gtatagaagg gcgtgttcct tatgtgggaa gtataagaag cgtggtgcat caacttttag
     7801 gaggtttgcg ttcttctatg ggttatgttg gggctaaaga tatagaagat tttcaaaaaa
     7861 gagccgaatt tgttgaaatt accactgcag ggcttaaaga aagtcacgtg catgatgtta
     7921 ctatcactca tgaagcacca aactacaagg ttaatcatca atgagttttg aagaaaattt
     7981 aaaacacgct aatgaatctt tggaaaaatt aaataatcaa gagcttgcct tagatgaaag
     8041 tgtaaaaatt tataaagaag gtttagagag tatcaaaaaa gcaagacttg agcttgaaaa
     8101 agcaaaatta gaagtggagc aaatcgatga gtaaaatagc agctttacag tttccaactt
     8161 tagctttaag tgaatcaagg cttgattatt atcttaaagc ttcaaaagac aatggagtaa
     8221 atttagtagt tttgggagaa tatgtgatca acagtttttt tacagaactt ttgcatatgc
     8281 caaaaaatat gataaaagaa caaagcgaag ctaaaaaaga aagcttgatt aaacttgcta
     8341 aaaaatacga attagaaatt atcgctcctt atgtaagcgt tgaagctaaa agttataaaa
     8401 aactttgctt aaaagttact ccaaatggtg tgaaaagtta tgaacagcaa attttaatgc
     8461 cttatgaaca ttggaatgaa gaaaaatttt tcagcaacaa aactccatca gaattaaaaa
     8521 tttttacttt taattatgaa aaattaaaat gtgctttgct ttttggtttt gagacacatt
     8581 ttgatatttt ttggcaacag attatggcga aaaaaattga tttggttatc gttcctagtg
     8641 cttgtacctt tgaaagcaaa caaagatggg aagaactttt aaaaacaaga gcttttttaa
     8701 attctacaag cattttaaga gtaaatcgca taggcaaaac aaaagatgag tggaattttt
     8761 acggcgatac tttgtttatt aatgcttttg gtgagataga aagtaaatta ggttctgaag
     8821 aagaaatgct tattatagag cctaaaaaaa gtgatgaagc aagaaaactt tggggttttg
     8881 ataaaattct taagaatttt taaagaaggt gaatatgaga aaaattttac ttcaaatttt
     8941 tatttttagt gtattattta tagtaacttt taccattaat cgtattttaa tgcaaaattc
     9001 ttttatccct actggtttaa ttagtgataa aaatgaaatc tttttaatgt atcttttagg
     9061 tgtttttcat gatataagat ttttaagcgc agcgttttta ccattcttgc tttgtggttt
     9121 tttaagttta attttttcta a
//
LOCUS       DARBAR010000064         9086 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.064, whole genome shotgun sequence.
ACCESSION   DARBAR010000064 DARBAR010000000
VERSION     DARBAR010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9086)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9086)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9086
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.064"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(154..229)
                     /locus_tag="SB815_001154"
     tRNA            complement(154..229)
                     /locus_tag="SB815_001154"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(194..196),aa:Phe,seq:gaa)
     gene            369..1712
                     /locus_tag="SB815_001155"
     CDS             369..1712
                     /locus_tag="SB815_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEG0906889.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGFIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            1723..2373
                     /locus_tag="SB815_001156"
     CDS             1723..2373
                     /locus_tag="SB815_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEG0906890.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(2370..3041)
                     /locus_tag="SB815_001157"
     CDS             complement(2370..3041)
                     /locus_tag="SB815_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HEG0906891.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKASMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQNYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(3047..3673)
                     /gene="upp"
                     /locus_tag="SB815_001158"
     CDS             complement(3047..3673)
                     /gene="upp"
                     /locus_tag="SB815_001158"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEG0906892.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEA
                     SKDFSLKEIEISTPIQKTTVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIDACNFLKSQGVKKIKFISIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(3670..4905)
                     /locus_tag="SB815_001159"
     CDS             complement(3670..4905)
                     /locus_tag="SB815_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG0906893.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSYDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEINVHSIEEIVNFCKALAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFDEKAYFESLK"
     gene            complement(4907..6298)
                     /locus_tag="SB815_001160"
     CDS             complement(4907..6298)
                     /locus_tag="SB815_001160"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG0906894.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNAKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFVNKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLGVDEC
                     KKRIDNFLKVRGK"
     gene            6363..7178
                     /gene="salC"
                     /locus_tag="SB815_001161"
     CDS             6363..7178
                     /gene="salC"
                     /locus_tag="SB815_001161"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HEG0906895.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSK
                     NQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGSFSPVLNGKNGY
                     ELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(7216..8547)
                     /locus_tag="SB815_001162"
     CDS             complement(7216..8547)
                     /locus_tag="SB815_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEG0906896.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIIAAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPAYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(8549..9004)
                     /gene="accB"
                     /locus_tag="SB815_001163"
     CDS             complement(8549..9004)
                     /gene="accB"
                     /locus_tag="SB815_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEG0906897.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
BASE COUNT         2936 a         1635 c         1279 g         3236 t
ORIGIN      
        1 ttataggtat ttagatactt tttttaatat tctgctaaat ccaccattct acatataagc
       61 tatagactct ttctttaaaa aataactttt agttctttaa atatttcaat cttatataaa
      121 aaagtatgtg atgtgatttt ttgaaagata aagtggtggt tagaggcaga atcgaactgc
      181 cgacacgcag attttcagtc tgctgctcta ccgactgagc tatccaacca caatgtttga
      241 taaagtaaaa atgtaattgt atcttttttt ctttaattta agtttaaata caaaaataaa
      301 attttatttc ccttaaagtt ttaataagat agaatacccg ctttagatca ttatcaaatg
      361 gaaatttttt gaaacaattt ggactagata gacgaacttt taaaatttta ctagctggtt
      421 atattattat tgcattgttt ggggctttat tgctacattc aagctgggca catacaactc
      481 ctattgattt tttagatgcc ttttttacaa gcacatctgc tgttagtatg acaggattag
      541 tagttaagaa cactgcggtt gattttacct tagcaggaca aattattatc ttagctttgg
      601 tgcaaattgg aggcttggga tatatgggta taggtttatt tgtttatata ctcatacgca
      661 aaaaagttgg ttttagtgca agaaatttac taaaagagtc tttattttat ccatcaatgg
      721 atggtttatt taaatttttt aaaaaggttt tgctgttcat ttttactata gaattgatag
      781 gtgctatact tctcaccatg cgttttgccc ttgaaatgaa ttttaagaaa gctttatggt
      841 ttggaatttt tcattctatt agcgctttta ataattctgg atttactata tttgaacatg
      901 gatttatagc ttataaacat gatatagcaa ttaatcttat tatcacttct ttgattatta
      961 ttggagggct tggatatttt gttttggttg aattatactt ttttcaaaga aaaaaattgc
     1021 aaaatttaag cctacataca aaaatggttg ttgttgcaag tatttttctt attttctctt
     1081 caacgcttat tatttttgct tttgaatact caaatcctca aactatagga catttttcat
     1141 tttttgataa aattttaagc tcatatttta tcgctattaa ttaccgcaca gcaggattta
     1201 ataccttaga tatgggacat ttgcatgatg caagcttatt ttttggatca ttgtttatgg
     1261 ttattggtgg tgcaccaggt ggaacagctg ggggtatgaa agtaacaact gtaatggttt
     1321 tattgctcta tgcttattgg agtatccgcg atggaagagt tagaattttt ggacatgaaa
     1381 ttccaagaga aactatatct aaagctttta ttatagctgt aggttcagct gtttatatag
     1441 taatagctgt tattttgctt tccttgctag agtcaaaatt tgattttata gccttgcttt
     1501 ttgaaacttc ttcggctttt gcaaccgtag gaatttcagt aggaaatggt ggaactttat
     1561 ctttatgcgc tttgtttagt gatcctagca aggtgattat catcattatg atgctaagtg
     1621 gtaggatagg tgtttttgct tttttactct cggtattcaa acaagacaaa gctattcatt
     1681 taaaattccc tgaaggaaag gttaatttat aaaggtaaaa tcgtgaaaaa tcttaattat
     1741 ggaatcatag gacttggaaa atttggatca gttgtagcag atgaactcat tgctggaggt
     1801 catactgtta tcgttgcgga taaagatgag gaagctttaa aaagtataca aaatcctcca
     1861 agctatgctt atattttaga ttctacaaat atttcagccc taaaagaagc aggctttcat
     1921 gatgttgaag ttgttattgt tagcatagga gaaaatgttg aaaaatcaat ccttactctt
     1981 atggcgctta aagatatagg tgttaaaaat atcattgcta aagcaacctc taatatccat
     2041 ggtcaaattc tttctaagtt aggtgcaaca aaggttattt atcctgaaaa agaaagtgct
     2101 aaaagactag taaaagaatt tttaactaaa gatgctgatt atgaagtttt tgatctttca
     2161 gcaaatacta tacgagctat taagatcaat atagatgaaa aattagcagg aaattcttta
     2221 aaacatgtag cacaaaatat gaaagtgatt tcttataaaa aattaaatag tgactgggaa
     2281 atactacctg atttagaaac cacgacagtt tatagtggag atgttgtaat actccttgga
     2341 acagttaaag aacttagaga atttgaacac taagcaagat ttaaagcctt acaagccttt
     2401 acaaaacgct ttaaggctgt tttttctttg gtagaaattt tatgatatat aacttcatct
     2461 aaataatatc taacatcttt tatatctaaa tcccttgttt tggcataatt ttgcagtata
     2521 taataaggaa ttttaatctt tgtttttgga aattttttca aaatttgttt atataaagct
     2581 tttttttgca cacaagaaaa tctagcaaaa acaaaaggca atcctgtttt ttcgtgccat
     2641 tttgcacata aatcgatata tttagaagga tcttttagat aaagctttaa agccttatca
     2701 cctataatta cttttccatc ttgttttaat actttagcca gagcgtttga agttgctgaa
     2761 cttggatctt tggcatttga tgtatttttt tctactaata cacttaaaac tcttttattg
     2821 gcacaaatac ccaaatctaa atttttatat ttttttctag cactttctat gcttgaaatg
     2881 atagctgcat caattcttct ataaaataaa tctttattta gcttacttgg aactcctttt
     2941 ttatactcca tacttgcttt ataaccatta ggtaggggat atttcttaag atatatatgt
     3001 aaaggtaaaa gattaatata atcaattttt ccaaaaatca tctcttttat agagtgttaa
     3061 acactctatc tcctgcatct ccaagccctg ggataatata acctttttca tttaaacctt
     3121 catcaataca agccacaaaa acttctacat catcatgcat ttggctaaat tttttcaaac
     3181 cttgtggagc agcaagtatg gatataaatt ttattttttt aactccttgg ctttttaaaa
     3241 aattacaagc atctatagca gtcccacctg tagcaaacat aggatctata acaatagcag
     3301 tgcgtttttt tgcatctttg ggaagttttt gaaaataaaa atccgccttt aaagtttctt
     3361 catttctcac aaaccccaaa aacccaacac ttgcatcagg aatcatctta aaaacacttt
     3421 caagcattcc taatgcagct cttaaaatag gacaaatcat aattttttca tcaagttttt
     3481 ttactgtagt tttttgtata ggtgttgaaa tttcaatttc ttttaaagaa aaatctttac
     3541 tcgcttcaaa aagcaaaaaa gatgaaattt catcgattaa catacgaaat tgaaagggct
     3601 ttgtctcttt agcccttaaa attcctaatt tatgttcgat caatggatga ttgatacaat
     3661 gaatattttt cattttaagc tttcaaaata agctttctca tcaaaatttt tcaccttagc
     3721 tacaccatct tttaccgcag ctgctgctac agctgtactt actgcagctt ttactctttc
     3781 atcaaaaggt tttggtataa cataatctct tccaaattct aaagtgctta aattataagc
     3841 ttttttaacc gcatcgctta caggaagttt tgcaagatct gctaatgctt tagcagccgc
     3901 tactttcata ttttcagtga ttttacttgc acgcacatct aaagccccac ggaaaataaa
     3961 aggaaaacct aaaacattat tgatttgatt tggataatca cttcttcctg ttcctacaat
     4021 cgcatctttt ctaagtctag ccacatcttc aggcatcact tcagggatag gatttgccaa
     4081 agcaaaaatc acaggatctt ttgccatgct taaaaccatt tcatcatcaa gaatttttgg
     4141 tgcactaagt cctaggaaaa catcagctcc ttttaaaact tcttttaaag tcttttcctt
     4201 agaatcaaca gcaaattcaa gtttttgagg agttaaatca tttctatctt tagaaatcac
     4261 tcctttacta tctactaaaa taatattttc aacccctaaa tttctataca tcttagcact
     4321 tgctatacct gcggcacctg cgccacttac aaccacctta atgtctttaa attttttacc
     4381 acttatctcc atagcattca taagccctgc agttgaaata atagctgttc cgtgctgatc
     4441 atcatgcatt acaggaattc ctaaatcttg caaagccgct tcaatttcaa aacattttgg
     4501 agcagctata tcttctaaat ttatcccgcc cacagtcgga gccaaagcct tgcaaaaatt
     4561 tacaatctct tctatactat gaacattaat ttctatatca taagcattta catttgcaaa
     4621 ttttttaaac aaacaagcct taccttccat aacaggtttt gaagcctgtg ctcctatgtt
     4681 tccaagtcct aaaacagcag aaccatcgct aactatagct accaaattag ctttatttgt
     4741 ataagtataa gcaagctcat tatctttagc gatttcaagg caaggttctg caactcctgg
     4801 gctatacgcc aaagatagat cataacttgt agccattggc ttacttggca caatatcaat
     4861 tttcccacct aaatggtatt ttaaagcttc ttcttttaaa ttcattttat tttcctctaa
     4921 cttttaaaaa attgtctatt ctttttttac actcatcaac ccctaaaaat tctaatactt
     4981 caaaaatact aggacttacc gcactccctg ttaaagctat gcgtataggc tgagccaaat
     5041 cttttaactt tgcttctttt ttttctaaaa aatcatttgt aaaatcttca aaatctttac
     5101 ctgttttttg atctttaagt gtattggcaa atgcttggag caattctaaa ttatttttgt
     5161 taacaaattt ttgcactgca ttttcatcat aattttgcgg tgcattaact atgctttttg
     5221 caccattgat aatatcatgc aaggtttttg cacgctctct taataaatca agtaaaaatc
     5281 ctgccttttc ataaacagat aaatcaaagc caagatcttt aagctgacgg ttaatctctt
     5341 caaaaggcaa agttttaata taatgagcat tcaaccattc aagcttttta gcattataac
     5401 aagatgcgct tttattgata tgataaggat caaaaagttt tttcaaatct tctagtgaaa
     5461 aaacctcgtc atcgccatga ctccaaccta aacgcacaag aaaattaagc aaagcttgag
     5521 gtaaaattcc catttctttg tattccataa catcagttgc cccatgtctt tttgaaagct
     5581 ttttaccatc ttctccatgt atcatagcca catgaaaaaa tttaggaatt ttaaaaccca
     5641 atgcttcata aagcacaatt tgtttaggag tatttgaaag atgatcatcc ccacgaatca
     5701 catcgcttac ccccattaaa gcatcgtcaa taacaacagt aaaattataa gttggggttc
     5761 catcacttct tgcaatgata aaatcatcca ttatatcttc tgctttaaat ctcacctcgc
     5821 ctttaacccc atcttcaaaa acaatctcgc cactttgagg cgctttaata cgcacaacag
     5881 gttctatacc ctgaggtggc gtgcctgtaa attctctata tcttccatca tatcttgggc
     5941 gctctttggc ggcttcttgc ttggcacgca attcttctaa ttcttcttta ctcatataac
     6001 aataatacgc tttaccttca tctaaaagct ttttaacata ttctttataa agatcaaaac
     6061 gctctgattg gtaagttact tctccatcat gttctaaacc acaccattta aaagcttcga
     6121 taattgcttt agtagcttct ttggaatttc tttttaaatc cgtatcttca atgcgaagta
     6181 aaaaatttcc accatttttt ctagcgtata aataattata aagagctgtt ctaagtccac
     6241 ctatgtgcaa ataccctgtt gggcttggag caaaacgcgt tgtaagtttt tcgtgcattt
     6301 tttgcctttt cttaaatttt tattgatata atgcgatatt tatacttaaa taaaggtttg
     6361 aaatgaaaaa aattttatta agttttgcat tttttgcaag tttggctagt gcaaatacca
     6421 ttaatgctat agctgtagtt gtagacaaag agcctatcac aacttatgat atagatcaaa
     6481 ctatgaaagc acttaaaatt gatagaaata aagctttagg cgtactcatc aatgaaaaaa
     6541 tggaaatttc acaaatgaaa caactgggta ttgtagtcaa tgatctagag cttgatgatg
     6601 ctataaataa aatgcttgct caaaacaaaa ccactttaaa tgctttcaaa gcaaatttaa
     6661 aatccaaaaa tcaaagctat gaacaatttc gtacaaattt taaaaaagat ttagaaaaaa
     6721 gaaagcttta tgaaaaaatc gcaagtatgg caaaaactga ctttagtgat gatggagcaa
     6781 aaaaattttt cgaacaaaat aaagataaat tcacttttta tacacaaatt aatgcaaata
     6841 tttatctatc aaacaatcct caaactttag aaaatatcaa aaatacaaaa aaaacaatcc
     6901 ttaaaccaca aaatgcatct ttaaacacaa gcaatgccga tccaagactt ttaggacttt
     6961 tatcgcaaat tcctgttgga agcttttccc ctgttttaaa tggaaaaaat ggctatgaac
     7021 tctatgaagt taaaagcaaa gatgggacac aaactcctga atacgaacaa gttaaaaatg
     7081 aagttttaaa cgcttacgta agtgaacaaa gacaaaattt catacaggat tattttgata
     7141 aactccgctc taaaatcaat atagaatatt taagataaaa attacaatta aaatttccct
     7201 tataataggg aaattttaat gtcttgcaag ataatttgta tcgtaattat tattaataaa
     7261 atcaggattt tccatcatgg aaagatgaaa atctttagtc gtttttatcc cacttataag
     7321 caactcatct aaagctactt tcatctttgc aatagcttta ttacgatctt ctgcccaaac
     7381 tacaagtttg cctatcatag aatcataata agcaggcacg ctatagtctt gataacaatg
     7441 actttccatt cttacattgc gtcctgcggg tggaatgtat ttagtaatct tacctggact
     7501 tggcaagaag gttttagaat cttcagctgt gattctacat tctatagaat gcccattaag
     7561 cttaatactt tcttgagatg gtaaggcata accttctgct actttaatca tttgttctat
     7621 gatatcaatc ccacttacca tttcacttac acagtgttca acttgcaaac gcgtattcat
     7681 ttctataaaa taaaagtcta aatttttatc tactaaaaac tcaaaagttc ccgcaccttc
     7741 atatcctata gctttagctg ccttaatagc agtttcatga agcctagtgc gtgttttttc
     7801 atcaagcaaa atcgcagggg attcttctat aagtttttga tggcgtcttt gcatagaaca
     7861 atctctttcg cccacatgaa tcacattgcc aaaactatct cctataacct gcacttctat
     7921 atggcgtgga ttttgtatgt atttttccat atacatagtt ccatcgccaa atgctgtcat
     7981 agcctcgctt tcagccgacc aatacgcttt ttcaagatct ttttcatttt caaccacacg
     8041 cataccacga ccaccaccac ctgcagctgc ttttaaaatc acaggataac ctatttcttt
     8101 ggcaagtttt ttagctgctt cagctcctgc caaagcccca tcgcttcctg ggatcacagg
     8161 tacgcctgct ctttgcatga cttgttttgc ttttgattta tcactcatta aattcatagc
     8221 ttccacagaa ggacctataa atttgatgtt atgtttagca caaatttcaa caaaattttg
     8281 attttcactt aaaaatccgt atcctggaaa aatcgcatca gcttctgcta tttcagccgc
     8341 tgcgatgata gctgggatat ttaaataact ttcagaactt cttgccttac ctatacaaat
     8401 gcttgcatca gcgtatttta aatacaaagc atctttatct gcttcagaat acacacaaat
     8461 tgctttttta cccatttctt taatcgttct taaagcacgc agtgctattt ctccacgatt
     8521 agcaattaat atgcttttaa tttccatttt ataatttctc caccgcaaat aaaggcattc
     8581 caaattctac aggctgacca tcagcaacta aaatttcagc gatcctacaa tcaaattccg
     8641 cttcaatttc attcatgatt ttcatcgctt cgataatagc tatagtatcg ccttttttaa
     8701 ccgtactacc tacttttaca aaaggtgctg cacctggact tggagcttga tagaaagttc
     8761 ctaccatagg gctgtttata cttggtttgt ttgattttac actttgacta ggttgagctt
     8821 cgtttacaac gcttacattg ataggttgtg gagctggaac tggaggacaa acaggagctg
     8881 gaacatcgca gcacatatct ctttcaagtt ctatttcaaa accatcttgt tctttgatct
     8941 taattttact aatatttgct tcagcaaaaa ggttgactaa ctctttaatt tcttcttttg
     9001 tcataaaatt ctcctacaaa atttaagaac ttaaccttgt attatataaa aaaacttgaa
     9061 atttaacttt aaaaaagaaa aaaatc
//
LOCUS       DARBAR010000065         9047 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.065, whole genome shotgun sequence.
ACCESSION   DARBAR010000065 DARBAR010000000
VERSION     DARBAR010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9047)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9047)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9047
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.065"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            22..777
                     /locus_tag="SB815_001164"
     CDS             22..777
                     /locus_tag="SB815_001164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG0906898.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKNIIEIFNKGIDEAKTDGFYDTLIKKYELE"
     gene            complement(801..1439)
                     /locus_tag="SB815_001165"
     CDS             complement(801..1439)
                     /locus_tag="SB815_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEG0906899.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKFDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(1436..2425)
                     /locus_tag="SB815_001166"
     CDS             complement(1436..2425)
                     /locus_tag="SB815_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0906900.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVIKPDLLLLDEP
                     LSALDAKIRKYLRVQIKEIQKELELTTIFVTHDQEEALELSDTIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            complement(2429..3208)
                     /locus_tag="SB815_001167"
     CDS             complement(2429..3208)
                     /locus_tag="SB815_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0906901.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAF
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAISNV
                     NLNELITSNAMLGGSLMGAIFKLILPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            complement(3209..4048)
                     /locus_tag="SB815_001168"
     CDS             complement(3209..4048)
                     /locus_tag="SB815_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0906902.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFVLAPSKICKFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSLENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            complement(4045..4854)
                     /locus_tag="SB815_001169"
     CDS             complement(4045..4854)
                     /locus_tag="SB815_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEG0906903.1"
                     /translation="MMSKAILVVLDGLNCKSASINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSGIINNKLSFSKQTSIFDLCKEQGLKAGGAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYANKTKKVDILISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSICEILGLKHDKRYNDEILKAKK"
     gene            complement(4851..6176)
                     /locus_tag="SB815_001170"
     CDS             complement(4851..6176)
                     /locus_tag="SB815_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HEG0906904.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANIAREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDAMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGVDFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFNVKNKKFTGKTYKYFLEDKSHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVVENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            complement(6187..7233)
                     /locus_tag="SB815_001171"
     CDS             complement(6187..7233)
                     /locus_tag="SB815_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEG0906905.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYDIEHSDTDMSSAQEIAKFKTEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHITLPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            7350..8333
                     /gene="corA"
                     /locus_tag="SB815_001172"
     CDS             7350..8333
                     /gene="corA"
                     /locus_tag="SB815_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEG0906906.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKVIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            8354..8896
                     /gene="mog"
                     /locus_tag="SB815_001173"
     CDS             8354..8896
                     /gene="mog"
                     /locus_tag="SB815_001173"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HEG0906907.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(8893..>9047)
                     /locus_tag="SB815_001174"
     CDS             complement(8893..>9047)
                     /locus_tag="SB815_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HEG0906908.1"
                     /translation="KEKPKIPINDVILDDRLCKFKNKVQKISKDEASASLLARQLSRL
                     IRANKF"
BASE COUNT         3268 a         1522 c         1219 g         3038 t
ORIGIN      
        1 attttatatc aaaggaaaaa aatgaaaaaa atattaagca ttgctctagt tgctttagtt
       61 ggtttatttt taggtgcttg tagtgattct aaaaataaag aatcaaatgc aagtgtagaa
      121 ttaaaggttg gaactgctcc aaattataaa ccttttaatt ataaagaaaa ctcaaaactt
      181 acaggttttg atactgattt ggttgaagag attgccaaaa aaaatggtat taaaattgtt
      241 tgggttgaaa ccaatttcga tggattgatt cctgctttaa aagctggcaa aatcgatatg
      301 attgcctcag ctatgagcgc aactgacgaa agaagacaaa gtgttgattt taccaaacct
      361 tactatatga gtaaaaatct ttatcttaag ctaaaaaaca acgactctct tcaaacgaaa
      421 aatgatttag aaggtaaaaa aataggagtt caactaggaa ctttacaaga aaatactgca
      481 aaagctatca aaaatgcaca agtacaaagc aataaagatt taaacatagc tgttttagca
      541 ctaaaaaaca acaaaatcga tgctattgta gctgatcaag atactgctaa aggtttttta
      601 gctgaaaatc cagaattggt aagcttctac caagaaacag atggagggga aggctttagt
      661 tttgcttttg ataaaaataa acaaaaaaat attattgaaa tatttaacaa aggcatagat
      721 gaagcaaaaa ctgatggatt ttatgatact ttaattaaaa aatatgaatt agaataagcg
      781 tgaattttca cgcttatagc ttaaaaagtt aaaatttcat attttctctc ttttgcaatt
      841 tttaaaattt tttcatcacc attacataca aaggctttgc taacagactc tagtaaaggt
      901 aaatcattga tagaatcact aaaaaaataa gaatctttca tccatttttc ataatcttta
      961 cccaaatatt ccttaagtct taaaaccttg ccttccttaa agctataaat cccataagct
     1021 tttccactaa atttatcacc cacacgctcg cattttatgg ctatgctttc tctcactccc
     1081 aaaaaagagg cgatttttct aactaaaaat tcagccgtag ctgaaattat aatacacctt
     1141 tgatcttgat atttgattat aagttcttta gctttttcat aaggttttat ataaattttt
     1201 ataaattcat ctaccaaaga tgaaattcta tcttcatttt tacccttaac actttgaaga
     1261 aaaaaagtca taaattcatc catatcaaac tttttttctt gatattgttt ttgataaaaa
     1321 acgatttttt ctaaatattc ttgaggtaaa aaaccttttt caacacaaaa tttaagccaa
     1381 agtttagcac tatcgccttg tattaaagta tcatctaaat caaataaaac aagcttcatt
     1441 ttaactcttt tgctaaagaa agattgaatt ttaaagcgat tttatcacct gcttcataag
     1501 tactatgagt gctaaaattt aaagtatcta ccttaaattc aatttcttgc actctaaccc
     1561 tatagcgtat gatattgcct agcaatgatt tttctttgat tttagcctct aagccttcgt
     1621 tagaaatttc tatggtttca ggacgcaagg ctatatcttt tttaaaatcg tgttttaaac
     1681 ccaagctatc aagctcttta gggcttaaaa tattgtaatt tcctataaag ctagccacaa
     1741 aatgagattc tggcaaaaga taaagattat ttgcgttgga attttgtatg attttaccct
     1801 cattcattaa aataatcgta tcggataact ctaaagcttc ttcttgatcg tgcgttacaa
     1861 aaatagtggt gagttcaagt tctttttgaa tttctttaat ttgcaccctt aaatacttac
     1921 gaattttagc atcaagtgcc gataaaggct catcaagtaa aagtaaatca ggtttaatca
     1981 ccaaagatct tgctaaagcc actctttgca tttgtccgcc tgaaagctta tgtggataag
     2041 ttttagcgta ttcttcaagc tcgacgagtt ttaacatttt tttcactctt ttttctatgt
     2101 cctttttatc catttttttg atctttaaac caaaagctac attttcaaaa acgttaagat
     2161 ttggaaaaag agcgtaattt tgaaaaacca tacctatatt tcttttttga ggacttaatt
     2221 tggtaagatc tttatcattt aaagaaattt ttcctccatt aatttggcta agccctgcta
     2281 tacaccttaa aagagtggat tttccacagc cacttgggcc taaaagggtt ataaactcac
     2341 cctttttagc actaaaatta atatcttcaa aaataatttt atccccataa gcttttttaa
     2401 aatttttaat ctttaaataa gccatttttc actccttaat caaactagct ataaaagttg
     2461 ttataaaaat taatacaaaa taaactatta ccaaagcact agaataatgc ccactttgat
     2521 ttttgatatt ataaagataa acttgtaaag tctcataagc acttcctaca agaatatttg
     2581 cgtataaaaa ttcacctatt aaaaaagaaa aacttaaaaa aactgccacc aaaattccat
     2641 ttcttaagtt aggcaagata agtttaaaaa tcgctcccat taaagaacct ccaagcatag
     2701 cattagatgt gatgagttca tttaaattga cattagatat agcattatct aaagccctat
     2761 atataaaagg taaagctata gtaaaataag taaaaatgag tatccaagct gtgcctccta
     2821 tattgtcagc ataaagttgc aaaagcccca cacagctaac tataggaggt acagcaaaag
     2881 gcatgataat aagtatattt acaaaggctt ttaattttaa aaaataataa tttagcacaa
     2941 aaaccaaagg gaaaacaaga atcacagaaa gtaaaatact gcccacacaa acaagcaaag
     3001 aatgccaaag agcaagtaaa aatctttcgt catgaaaaag ttcttgatac catttaagcg
     3061 taagatcatc aggcaaaaca cttacacccc aagaagtgga aatagaatat aaaaaagtag
     3121 ccattaaagg caaagctaaa aataaaaaaa ccaaaaacaa aactgcataa tgataaattt
     3181 tagcttttaa actcaaattt tcattcattt aaagcacctt aaaattatat tttttagaaa
     3241 ggaaattggc tataaaggta acaacaagca tgataatagt tataatgatg cttaaagcac
     3301 tagccatata aggatcaaga ttgatatcgc ctgcgattaa agcagcgatt cttacaggag
     3361 cgacattaaa atttcccgaa cttaaagcat aaatagtcgc ataagctcca aaagcattgg
     3421 caaataaaat cacaaaaaca ccaaacaaag caggagcgag caaaggcaaa gctattttta
     3481 accaatataa aaaattgcct ccacctaaca ttttacaagc atttaaatgt gaattttcaa
     3541 gacttttaaa agctggaagc aaaagcaaga ttgccaaagg aatttgaaaa tacacataaa
     3601 caatatttac cccgaaatta gcataaacac taacaaaagg ctctatgcct aaatttttca
     3661 aaaacacatt aactacacca ttgcttccaa gaactataat gaaagcaaaa gctaaaggaa
     3721 ctcctgaaaa attacttatc atagtattta aagaaaaaag aaatttacat atttttgatg
     3781 gagctaaaac aaataaagaa tagctcgcca aaagccctat taaaagtcca aaaatactag
     3841 aaataaaact gatttgtaaa gaatttataa tgctttgtag atagaatttg gactcaaaaa
     3901 tatgtataaa attggctaaa gaataaattt catcctcttc tacataaaaa gcattaaaaa
     3961 caatccaaat caaaggcgct atcataaaaa aagtaaaaac tataaaaaaa ggtaaaatac
     4021 ttaaaaaggc tagaaatttt tctttcattt tttggccttt aaaatttcat cattatatct
     4081 cttatcgtgt ttaagtccta aaatttcaca gatactgcca caaatttcat cctgttttat
     4141 cttggcattt tcatacgaaa aagcactacc aaaagtgaaa aaaggcacta aaatttcatc
     4201 ttcacttaag cctccatgac ttttaccctc tgtcatacca tgatcgcttg tgatgattac
     4261 attaatacct tgttctaacc aagtaggcaa atactcagaa atcaaaatat caactttttt
     4321 ggttttatta gcatactcaa tagagtgtga gccaaattta tgtcctgcat catctatatt
     4381 catagaatgt ataagagtaa aatctagatt atatttgttt cttaaatgct ccccatctgc
     4441 aaataaatga gaatctaaat aatcatcttc ataataaaaa tgtccataag gcaaagttaa
     4501 attttcatct tctatgtggc gatgtaaaga aggaataaat tcttttttat tataaagctc
     4561 aaaaacccaa tgataagctg cgcctccagc ttttaagcct tgttctttgc aaaggtcaaa
     4621 aatgcttgtt tgttttgaaa aactcaattt attattaatt atcccactta aaacaggctt
     4681 tacgcctgtt aataagcact cgtataaagg acgagacata ctaggaagtt cgcattctaa
     4741 agaataaaat ttgcctaaat tctctttgca aagcgcattt aaatatccca tatttatact
     4801 agcactttta caatttaagc catcaagcac aactaaaata gctttggaca tcatttactc
     4861 tttaaaaaat cttttacttc aagtaaaata aattcattat catcagtttt attaggttct
     4921 ctacttgaag aataaggaaa gttattgtca ttttctacga ctatatgaga gtcatctact
     4981 atatccacac cttctatggt ttcaaaagga aaaacaaatt tatcatttac caaaggcttt
     5041 ttagaaattt tatttctatc cttaatattt aaaagatcta tataagaaat tttttgagct
     5101 tcatgagttt tatcatctaa tttaaccttg taaattcttt taaattgagc tacattatta
     5161 aaacaatgct tagtatcttc accttctttg caagccttat ctttagtgcc ttctttttga
     5221 tctctttcta tgatgatgcc gtatttatca tctatcatat taaaatcacc tatggaatgg
     5281 cttttatctt ctaagaaata tttataagtt tttccagtga attttttatt ttttacatta
     5341 aattctatga ttcttagata ttctttacct ttttcattct cataagcgtt gttattataa
     5401 atgcttcctt ctaaaagcaa ataaagttta gaaccatctt tagagcttgc catagcttca
     5461 aagcctttag aacgcttgat attaaatttc tcattttctc catcaggctt atcgctaaat
     5521 tttaaacttg gattatcagg agaaataagt tttttaccct ccacatacac atcaaaaact
     5581 tcttttaaat tcccattctt atcaaaatga agcaaataag gaccaaattc atcacctata
     5641 taaaattcat cattgataac ctgtatactc tcagtatcaa aatcaacccc acttaaatac
     5701 ctttctttgg ttgtttcggt ggttatagga taggggtatt ttttatcact atctttaaaa
     5761 aaaactgttt ttaaaagttc gtattttgag tttttaaaat caaatttaaa ctcgtgagca
     5821 taaagcatgg catcataaga attatacttt ttacccaagc cattatcgct aattacccaa
     5881 aaaacatctt tttttggaat atattttatc ccactatgtc cttgtatagg ttgattttta
     5941 aaaggtaaat aaaaatctgt ttccctgttt cccttagatt taaaagttcc aattttttct
     6001 tctctagcga tatttgcaaa tttcccataa gttttaaaaa aatcaggagc atccttagga
     6061 ggttttactg tacttttaga atctatgata atatgccctg ctaaattggc ctcatactct
     6121 tgaactccaa ataaaacact gcaaagcata gcacttgtta aaataacctt tttcatccaa
     6181 tctcctttat ttcatatcca ctataacttt ttcttgccaa agttgtggca attctttagc
     6241 gcttttttcc caagcttttt gatctttgat tgctcttgca tttttgtatt gctcacttgg
     6301 taaaagttta gcttttatat catctggcaa ggtaatatga tcaattctta ttggccttgc
     6361 ataacctttt gctagattga tttgtccttt atcagaaagt ataaactcac gggctaattt
     6421 agccgcattt ggatgttttg cgtatttatt gataatagtt gtataacccg aaataacact
     6481 accatcagca gggattaaaa cttcataacg atctttgccc actttatctc tatagcctaa
     6541 accattaaaa tcccaaacta aacccacttc aacttcacct ttttcaagat tggctatact
     6601 tacatcatta tttacaagtc ttccttgttt ggctaaagta ttaaaaaaag ctaaagcagg
     6661 acttaaatct ttttcatccc cacctaaggc ataattagct gccaaaactg cactcacagc
     6721 ttgagctgct acacttacat cgcccacggt aattttataa tttcccttaa gcaaatcttg
     6781 ccaagtttta ggtatatctt ttactacatc tttattgact ataaaagcta tggttcctgt
     6841 ataagctaaa agccaatttc catctttatc tttagcccaa gttggaattt gatcccagta
     6901 acttgtctta aaaggctgag ctactccttg tttaaccgct atctctccaa aagacgcccc
     6961 tacatcccct atatcaccgc ttgcattttt cttttcggtt ttaaatttag caatttcttg
     7021 agctgaactc atatctgtat cactatgttc tatgtcataa agatttttaa gatctgccca
     7081 agtatccttc cagtttgccc aagtatcagg catagctaaa gaatttaccc taccttctgc
     7141 ttgcgcagct ttaatcaaat tctcatcaat agcttgtgaa tttgaaaaca ataaagcaac
     7201 aagacctaaa cttaagaaaa atttcttact catttttttc ctttcaaaaa atattttgga
     7261 aatttaatga gttttagaaa cattttagaa acaagttaat ttttaagcaa acaaggttat
     7321 aattttaaag tcataaacaa ggagcgatca tgctttatat ttatatcaaa actcaaaatg
     7381 ctttagttca aagaatcaat tttaatctcg atagtcaaga actaccgcaa aatattttat
     7441 ggattgattt acttcatcca agtgcagcag aaattgcttt tatatcaagt gaatttaatc
     7501 ttgagtttcc tacaaaagaa gaaagggaag aaatagagct tagcgcaaaa tattgggaag
     7561 ataatgcaac aataaccatc aatgctcatt ttttagtaag agatcttaaa agtgatgaag
     7621 aagatagaaa tttaatcaag cttcgcacag aaattgttac ttttgctacc gctaaaaata
     7681 tcttatttac tataagatat aacgaattta gcacttttga agaaattcaa gcaaggattt
     7741 tagctagtcc gaagaatttt gaagatggtt ttgatattat tgataaaatg tttgaagtac
     7801 gcgttgaaaa agatgcggat ttactagaat ggatagataa agaagcaaga cgcttaagaa
     7861 caagtgtttt agaaaaaaaa gatgaatata gttatgatga aatgctaaag gatatttcaa
     7921 gtttgcaaga gcttaatatg cgcgtaagag attctttatt tgataagcgt cgcgctatga
     7981 cttctttgtt aaaaagcgat aaaatcgata aagacataaa acaaaatctc actatagttt
     8041 taaaagactt aaattctttg gttgaattta gcgtttcgca acttaatatc ttagataata
     8101 tccaaaccat tttagccagt caaatcaaca tagaacaaaa caaagtcatt aaaattttca
     8161 ccgttgcaac tgttgccatg atgccaccta ctttaatagg aactgtttat ggtatgaatt
     8221 ttaaattcat gcccgaactt gaacttcact atgcttatcc catagtgctt ggcgtgatgg
     8281 taatttctat cattttacct ttggttgttt tcaagaaaaa aggatggtta taaaaattta
     8341 ttaaggagaa acaatggata caataaacat aggaatttta accctaagcg atagagcaag
     8401 tagtggtata tacgaagata aagccactgc tgaaattgaa agagtgttaa attcatatat
     8461 aaaaaatgat attatttatc ataaagaatt aatccctgat gattatgatt tgatcattaa
     8521 aaaattactt tatctagcag atgaaaaaaa atgcgatttg attgttacaa gcggaggtac
     8581 aggtccagca cttcgtgatg taaccccaga agccacggaa gccgtgtgtg ataaaatgat
     8641 gccaggtttt ggagaactta tgcgcttaga aagtttaaaa tatgtcccaa cagctatact
     8701 ttcaagacag agtgcaggaa ttcgcaataa atcttttatc attaatttac caggaaatcc
     8761 taaggctata aaagaatgcc tagagcctgt ttttccggct ataccttact gtatcgattt
     8821 gatagaaggt gcttatatag aagcaaatga tgaagttatt aaggtttttc gccctaagaa
     8881 aaaatgtcaa aattaaaatt tattagctct gataagtctg cttaattgtc tagcaagcag
     8941 acttgccgaa gcttcatctt tgcttatctt ttgcacttta tttttaaact tacaaagtct
     9001 gtcatctaaa atcacatcat tgattggaat tttaggcttt tcttttt
//
LOCUS       DARBAR010000066         8871 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.066, whole genome shotgun sequence.
ACCESSION   DARBAR010000066 DARBAR010000000
VERSION     DARBAR010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8871
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.066"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(70..822)
                     /locus_tag="SB815_001175"
     CDS             complement(70..822)
                     /locus_tag="SB815_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906909.1"
                     /translation="MLAFFKGLGVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNANTNIAPR
                     MLNAKSDNIELSSPIISKKEQILNAKALFICK"
     gene            895..1914
                     /gene="mutY"
                     /locus_tag="SB815_001176"
     CDS             895..1914
                     /gene="mutY"
                     /locus_tag="SB815_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEG0906910.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKDVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCRICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMGFVGEFKHSYTKYKLNIKVYHQILNNENKNYEFKTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(1900..3159)
                     /locus_tag="SB815_001177"
     CDS             complement(1900..3159)
                     /locus_tag="SB815_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0906911.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFVIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLCLPKKSELN"
     gene            3325..4182
                     /locus_tag="SB815_001178"
     CDS             3325..4182
                     /locus_tag="SB815_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HEG0906912.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSQKGIRGVMSEEKFQNLAYEIS
                     NKAELFTFHLLGDPLLLPNLENYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEAKIDANLSKNRLQRHILLHQNKLFKWPNLKDEPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDTKADINLGNVFENNFDKLFRSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLGD"
     gene            complement(4179..4985)
                     /locus_tag="SB815_001179"
     CDS             complement(4179..4985)
                     /locus_tag="SB815_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG0906913.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFNQKFKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(4982..5758)
                     /locus_tag="SB815_001180"
     CDS             complement(4982..5758)
                     /locus_tag="SB815_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0906914.1"
                     /translation="MLKIHDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGEISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKEFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKLVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            complement(5758..6744)
                     /locus_tag="SB815_001181"
     CDS             complement(5758..6744)
                     /locus_tag="SB815_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG0906915.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYDNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            complement(6719..8848)
                     /locus_tag="SB815_001182"
     CDS             complement(6719..8848)
                     /locus_tag="SB815_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG0906916.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNKAINLQKVVVSTTGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISSISFVNFGLGRNIDMRGQGNKSNIA
                     VKVMIDGHAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITK
                     KQKSDAFAINLKSSAYDHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQEGYNEK
                     GYFINTKTYIDINDNSDLTLGYNYFKSKNTSSGYLTKAQAQSDPTQKGKSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDVSTMSYMNMSLPVYQNGSGFEDTLT
                     GISLKNKLNYANNSYFIFGYEFANHDAKRKSLVYYSVPSVINYHRMTTLIDMTKQSHS
                     IFALDSHNFNEFFTLSGGARYEFSSYNTDRSYRNEMSMNGRPPSPTIIDSTTLFDTNK
                     NANNFAFEITPNFKYSDTGKLYIKYERGFVSPSPAQFVNKDKNSQKYYSANLNPEIFD
                     TFELGIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVEL
                     SLSQNFLDDDLIFRESLTYLDAKISKGVNDGMRIPYVSKIKATAGLEYAWNKNFSNFI
                     DLTYFSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKRY
                     YTYQDSINDQYLVGNGRNYYVEFKYAF"
BASE COUNT         3120 a         1322 c         1333 g         3096 t
ORIGIN      
        1 aaatttctga aagaattgaa gataaaagta tagcaaaata aacttaaaag gagtttattt
       61 tgctataagt tatttgcaaa taaataaagc ttttgcattt aaaatttgtt cttttttgct
      121 gataattgga gatgaaagtt ctatattgtc agatttcgca tttagcattc taggtgcgat
      181 attggtattg gcatttactt gtaaattttt caatacacaa gttttattaa gatctaaaga
      241 gtaagttttt tcatattcgt atgatgtttt taaaagctct ttgtagagat tttctttgtt
      301 gttgtttagt gtatcttttg aaaattttgt ttgtatggct ggtgttgaaa cgctgatgaa
      361 attattttta gctatgatag aattgatgtc atttaaaagc ttgttaaaat ctgcaagttg
      421 gttttcttta aattcacatt ctaaattcgc atcaaatctt tgaccttttg gagtttgtat
      481 accatcttta taggaaaaat taggttctaa agaaaaactt cctccgctac aaaaattttc
      541 tttttttgag cgttctaaaa tttgattgaa agtatttgtg atttcagctt tttcactatt
      601 gtctaatgta atttttgaac ttaaattttc atttgcccaa aaattaatat ttgcatataa
      661 aatatcgggt tttagcgtat tgcttacttc tatatttctt gaaaaatata aatcatgatt
      721 agagtctttt ttgcctaaaa attctacatt aaaaactact cctgcaacaa aaagtaataa
      781 acataaaaaa cctacaccta aacctttaaa aaaagctaac atggatatcc ttaataattt
      841 aatttgagct aattttagca aaaaatttta aaattttttg ttatactctc atttatgcaa
      901 aaaaaagagc ttgaaaaact acaagaaaat ttacttcttt ggtatgaaaa aaatggacgc
      961 aaaactttgc cttggcgtaa tttacaaagt caaaattgtg atgaaagttt aaagcatatt
     1021 gatagagctt atggggttta tatcagcgaa attatgcttc agcaaactca agttaaatca
     1081 gttttagaaa ggttttattt cccctttttg caaaaatttc ctactttaga aagtttggct
     1141 aatgctaatg aagacgagct tttaaaggct tggcaaggac ttggttatta cactcgtgct
     1201 agaaatttaa aaaaggcagc cttagaatgc gtggataagt ttggggctaa attacccaaa
     1261 gatgttgagg atctaaaaaa attaagtggt ataggagctt atacagcagg cgctatagct
     1321 tgttttggct acgatcaaaa ggtttctttt gttgatggca atatacgccg tgtgctttct
     1381 cgtctttttg ctttggaaaa tcctagcatg aaagaacttg aaaaaagagc taaagagctt
     1441 ttaaatttaa atcatgcctt tgatcacaac caagctttgc ttgatatagg ggctttggtt
     1501 tgtgtgggta aaaatgcaaa gtgtaggatt tgtcctttgt atgatttttg tcaaggcaaa
     1561 tttcatacag agctttatcc aagagctaaa aaaatacttt atgagagttt aaatttaaat
     1621 ctttttttgt ttgaatttaa taaaaaattt gcgatacaga aaagccaaga taagctttat
     1681 aagggtatgt ataattttcc tttttttaaa gaaggagagt ataaactttc taaagatatg
     1741 ggttttgtag gggagtttaa gcacagctat actaagtata aacttaatat caaggtttat
     1801 catcaaattc taaacaatga aaataaaaat tatgaattta aaaccttaaa agagttagaa
     1861 agtaccgcac tttcggcact ttctttaaaa gcgttaaaat taattaagct ctgatttttt
     1921 aggcaaacat aaagtagcta taagcatgat gattgtaaaa atagctatat atataaaaaa
     1981 gccattttct atacctgcat ttttaaattg taaagcaacc caaggagcag atcctccaaa
     2041 aacagcattt gaaatagcat aacctaaacc tgtccctaaa gctcttacat gttcaggaaa
     2101 aagttttgct ttaaaaatcc cagcaactga agtataaaaa cttaaaataa caaacaataa
     2161 taccaccaac ataaatgtca aagaaggatt attttgtgcg ttattggcta taagtgaaaa
     2221 aataggataa attcctacca atgccaaaat acaaaataca attaaagatc gtttgtgacc
     2281 tattttatct cctatatatc caaaaagagg ttgaatgatc attagtataa ataaagcacc
     2341 taagaaaaga ttattaacaa gcattttatc catacccgta ttttccataa aagttttagt
     2401 ataagttgta atggtgtaaa aagctaaaga acctccagag gtaaccccaa gtaccattaa
     2461 aaaaggtttc caagatttgc ataatgcctt taaagtacca cgatcttcat gctggtgaag
     2521 ttttgtagca ctttcattca tcatttttct tacaaaaagc gagcctagtg ctaaaattcc
     2581 gcctattaca aaaagtattc tccaagcata atctttcata tcatcaatgc taaaaaataa
     2641 aaacattata ctaatgcttg caacggccaa aagttgacca cctattaggg ttacatactg
     2701 aaaagatgag taaaaaccgc gttttccttc cgtagcaagt tctgaaagat aagtagctgc
     2761 tatgccatac tccccgccta cactaagacc ttgaataagt cttgctatta aaagcaagat
     2821 aatagcaaga tcgcccactg tatctttgct tggtaaggct gctatcataa aagagcctaa
     2881 agccattaaa accactgata taaccataga ttttttacga cctactttat cagctaaaga
     2941 gccaaaaagc caagagccta taggacgcat aaaaaatcct gctgcaaaaa ccccaaaggc
     3001 attgatttgc tggataacag gattatctga agttgaaaaa gtatgagcaa aataagttgc
     3061 tgtaaaagca tagatataaa aatcaaacca ctctactaaa tttccgctac ttgcagcaat
     3121 aatagagcga atttttttcg tgcgagtaag ctcttgcata aacccttcct taattttaga
     3181 tttttattta agtatagtgt gatttttgtt taatatattt aaaaataaag aagagaaata
     3241 aaaaagataa aaatatcgat aaaaatgtta catattttaa taaatttcat aaattttggt
     3301 aaaatgttta ctctaggaaa tataatgaaa tttaaaaaaa tatatataga attaagcgat
     3361 atttgtggtt taaaatgtga tttttgtcct tctcaaaaag gaattcgcgg ggtaatgagt
     3421 gaagaaaaat ttcaaaactt agcttatgaa atttctaata aagctgagct ttttaccttt
     3481 catcttttgg gtgatccttt gcttttacct aatttggaaa attatctaaa aatcgcaaaa
     3541 gatgaagcta tgaaacttga aatcactaca agtggctttt atctaaattc taaaaatcaa
     3601 gctttattgt tagggtatga gaatatccat caaatcaata tttctttaat gtctttttta
     3661 agtcaaagca aaatttcttt agaacagtat tttaagccta ttttagaact ttgcaaaaag
     3721 catttagagc aaaaaagcct ttcttttatc aatctaagac tttggaattt agatgctaat
     3781 tttaaagcac ctaagtcaaa tttaaaaatt tatgagtttt tagccaaaga atttgaagct
     3841 aagatcgatg caaacttaag taaaaatcgc ttgcaaagac atattttgct tcatcaaaat
     3901 aaacttttta aatggccaaa tttaaaagat gaaccccttt ataaaaaagg aaaatgtcat
     3961 gctttaaaag agcaaattgg gattttaagt gatggaagtt tggtgccttg ctgtttggat
     4021 actaaagcag atattaactt gggaaatgtt tttgaaaata actttgataa gctttttaga
     4081 tcaccgcgta taaagatgat gaaaaaagct tttgaagaag ataaacgcat agaaaaactt
     4141 tgtcaaactt gcgaattttt taaagcaaga ttgggtgatt aaaaattgtt attttctagc
     4201 tttgttttaa attcttgaat tctatctatt atcttaggac taagacgtaa taatataggt
     4261 gtatctttgt taaaataaat acttcctgtt ttaactgctt tggtattttt caataaagca
     4321 tttgtatcta aaagattgtt tttagcatta attccaagaa tgagtatgtc tggattttgt
     4381 ttcagtatgt attctgctga tataacaggt cttgaaattt gactttgcgg gcttaaattt
     4441 ttaatcccta taagtcttaa aatatcagct attaaagaat tatcattaaa ggccattaaa
     4501 gggttgctag aataaagata aatcgcactt ttatttaggg gtttatcgct taatttttta
     4561 aatttttggt taaattcttg ttttaaaagc tctgcttctt tttctttttt ggtgatttgg
     4621 cctaaggttg tgatattttt tgttatatct tctaaacgct cggcttttaa attgatactt
     4681 ttgataccaa aatttttaag tccttcttct aaatttaaag aataagagct taaaatcacc
     4741 aaacttggtt ttaatgctac tattttttca agtgaaggat ttgaaaaagt gcctacactt
     4801 gtaagttttg aggtttgatc tttaggatag atatttgagt gttgtaaagt ggcaatgcct
     4861 acgatttgat cttcagcctt aagcataaaa agggtttcta tgcttgcagg atcaagcact
     4921 acaaggcgtt cttttgcatt tagtgtgatt aaaaacaaac tcataataat taaaattttt
     4981 ttcatttttt ctcctttaaa gctaaaatat aaggtttaga atttttataa ataatctcgc
     5041 agtttaaatc ataaatttct tttaaaattt cttgagtaaa aagctctttg ctcgttccaa
     5101 aatactttat ttccccttct tttaaaaaaa ggattttatc gcagaacata gaagctaaat
     5161 ttaaatcatg caagatagca acaacggcta tatttttttc tttaactagt ttttcgcaaa
     5221 gacttaaaag ctctatagca tagtttaaat caagggctga agtgggttca tctaaaaaaa
     5281 gaatttttgg ctttttaagc aaagctcttg ccaaaagcat tctttgaaat tcacccccac
     5341 ttaaagaaag tatgcttctt tctagaaaat tttcaagtct taaatcctta gcaaattctt
     5401 taatttctaa aatatcttct ttagaataag aactaaaagc gtgttttaaa ttcgcatatt
     5461 tgctcattaa aagcacatcg atgactttta aaggggtgtt taattctgat ttttggggca
     5521 caaagccgca aattttggca aattctttaa gagaaaaatc tttgatattt gtattaaaaa
     5581 gacttatctc tcctttattt ggacttaaat ttttaagtat aagttttaaa agagtgcttt
     5641 tgcctgagcc atttggccct aaaattccta taaaagcctg atttttaagt tctaaatgaa
     5701 tgttttttag taaatctttt tggtgataag caaagcttaa atcatgtatt tttagcatta
     5761 taaaaatctc ctagcgctta aagccaaata taaaaaaata ggagctccaa aaaatgcagt
     5821 taaaattcca atcggaattt gtacaggggc taaaagagtt cttgctaaag tatcacaaat
     5881 aagtaaaaat aatcctccaa atgctgtaca taaagggata accaaggcat tatcatagtt
     5941 tttaagcaaa agtcttatag tatgaggaat gatgagtcca acaaagccta taagtccact
     6001 aaaagcaacc gcaaaagata cagccaagga tgagacaatg agtaaattta tctttaattt
     6061 ttgagcattt acccctagat ttctagcttc atcatctccg cttaaaagta tgtttaattc
     6121 gtttttatga gcgtaaaaat aaaacaaaca aaaaattaaa ggcaagatta aaatacccac
     6181 acgaaaccaa gaagcattgc ctatatttcc catgagccaa gcgactattt taaaagaatc
     6241 ctcgcctata agataagtga aaaaagaagt aaaagctcct aaaaaagatg aagctgctat
     6301 gccgataatg agtaaagtcg ctatagaagc tttagaagaa attttaaaaa ctcctagggc
     6361 aaaaaaggca gagcaaacaa aacctaaaat tccataataa taatcattca attttaacaa
     6421 atacgctaaa accgctccaa aggttgccgc agaagctata cctatgatat aaggatcggc
     6481 tataggattt gaaaatacat tttgagtgat agccccacta ctagctaaaa gcataccgat
     6541 taaaatcgcc attataatcc gtggtaagcg tccatctatg attatttgtc ttaaaatttc
     6601 atcttggcta aagatatatg aaaaaagctc ttttggattt aaattctcat ctcctaagca
     6661 aagtgctgta aaagaagcga ttatataagc taccaaaagc cctataatca ctaaaatttt
     6721 agaatgcgta tttaaattca acatagtagt ttctgccatt tccaactagg tattgatcat
     6781 ttatactgtc ttgataggtg tagtatcttt tatcgaaaag attgcgaatt cctgctaaaa
     6841 tttgtagttt tttataatta tatttcatgc caatatctgt taaaaaataa tcccttatcc
     6901 aagaattttt agacattttt cctgtatttt catctatagt tccaccatct tttgctctag
     6961 aaaaataggt taaatcaata aaatttgaga aatttttatt ccaagcgtat tcaagcccag
     7021 ctgtggcttt gatttttgaa acataaggaa ttctcatgcc gtcattaaca cctttagaaa
     7081 ttttagcatc aagataagtt agactttctc taaagattaa atcatcatct aaaaaatttt
     7141 gactcaggct taattctact cctaaacggc gagtttgatc tatattataa tatttccacc
     7201 aagatccact agtagaatga gggtttccaa gataagaaat ttcatctttg cttagggtgt
     7261 aaaataaagt tagattaaag ccgtaaaaat cccaccaaaa atcatcaata cctagttcaa
     7321 aggtatcaaa gatctcagga tttaaatttg cagaataata cttttgtgaa tttttatcct
     7381 tgttgacaaa ttgtgctgga cttggagaga caaaacctct ttcgtatttg atataaagct
     7441 ttcctgtgtc tgagtattta aaatttggag tgatttcaaa agcaaaatta ttggcgtttt
     7501 tattggtatc aaaaagtgtt gttgagtcta tgatagtagg tgatgggggt cttccgttca
     7561 tactcatttc atttctataa gatctatcgg tattataaga gctaaattca tatctagctc
     7621 caccggataa agtaaaaaat tcattaaaat tatgagaatc aagagcaaaa atagaatggc
     7681 tttgtttagt catatctatt aaagttgtca tcctgtgata atttatgaca cttggaacgc
     7741 tataatacac caaactcttt ctttttgcat catggtttgc aaattcataa ccaaaaataa
     7801 aataagaatt atttgcataa tttagtttgt tttttaaact tatccctgta agcgtgtctt
     7861 caaaaccact tccattttga tatacaggaa gactcatatt catgtagctc attgtagaaa
     7921 catcttttag ataattgatc ttttgatttt gccaaaaagc ttctaggtta aattcccata
     7981 tatcatcaaa atagtaatga taatccaaag aaatttcagg gcgattgatt tgtgtgatat
     8041 tatcactctt acctttttgg gttggatcgc tttgagcttg tgcttttgtt agatagccac
     8101 tgctggtatt tttgctttta aaataattat aacccaaagt taaatcgcta ttatcattga
     8161 tatcaatata ggtttttgtg ttgataaaat aacctttttc attataacct tcttgatatc
     8221 catcaaggtt aaaactttgt atatcaaagc taaaagctaa attttcattt atttgtttgg
     8281 caccattgat acctaaattt ccacctagtc caccatgatc ataagcactg ctttttaaat
     8341 ttatagcaaa agcatctgat ttttgttttt ttgtaatgat attaatcacg ccacctctag
     8401 taccacttcc ataaagcaca gatccacccc caggtatgat ttctatgcgt tctacattat
     8461 ctaaattgat actatctagt ggggttacac catgggaatt atcaagaaca ttaatagcat
     8521 gcccatcaat cataactttt acagctatat tggatttatt tccttgtcca cgcatatcta
     8581 tattgcgtcc aagtccaaaa tttacaaaac taatgctcga aattctttct aaggcttgtt
     8641 ctaaagaaac ataaccttta ttttgtagat ctttgccttc tatgctgatt acattgcgta
     8701 aatttgaatc cgcatcttgt tcaaaacctg ttgtactaac aacaactttt tgtagattga
     8761 tagctttatt tgattcttgt gcatttaaat tagttattag caataatgca aataaagata
     8821 atttaaaagc ttttttattt gggtgcaaat tttactcctt aaataaaata a
//
LOCUS       DARBAR010000067         8826 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.067, whole genome shotgun sequence.
ACCESSION   DARBAR010000067 DARBAR010000000
VERSION     DARBAR010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8826
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.067"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(128..457)
                     /locus_tag="SB815_001183"
     CDS             complement(128..457)
                     /locus_tag="SB815_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEG0906917.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            complement(454..1728)
                     /gene="hemL"
                     /locus_tag="SB815_001184"
     CDS             complement(454..1728)
                     /gene="hemL"
                     /locus_tag="SB815_001184"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEG0906918.1"
                     /translation="MTNKKAFKETCKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQACHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            complement(1725..2072)
                     /locus_tag="SB815_001185"
     CDS             complement(1725..2072)
                     /locus_tag="SB815_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906919.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            2152..3000
                     /gene="folD"
                     /locus_tag="SB815_001186"
     CDS             2152..3000
                     /gene="folD"
                     /locus_tag="SB815_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HEG0906920.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            3010..3858
                     /gene="lepB"
                     /locus_tag="SB815_001187"
     CDS             3010..3858
                     /gene="lepB"
                     /locus_tag="SB815_001187"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEG0906921.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPAYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3880..5040)
                     /locus_tag="SB815_001188"
     CDS             complement(3880..5040)
                     /locus_tag="SB815_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG0906922.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDECIEENKLIIKKVPKQYNAYRYKGEELKKGEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMLQNASYLGIIKDDF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKGIFTPFNENKFGSGMILPLIKSEFLLISEENTGELKKGDEITLLKI"
     gene            complement(5037..6293)
                     /gene="murA"
                     /locus_tag="SB815_001189"
     CDS             complement(5037..6293)
                     /gene="murA"
                     /locus_tag="SB815_001189"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEG0906923.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     TEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGAKITRLEE"
     gene            complement(6359..6787)
                     /locus_tag="SB815_001190"
     CDS             complement(6359..6787)
                     /locus_tag="SB815_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906924.1"
                     /translation="MQINNSLNSLSQYVKVNSNEENQNSKNQEQNALAQDPAVEVNIS
                     KEAKEKSNTSNQNNSQAPAQALNAQNNTQQDSSSNSEDKLTELTQKLAEIQAKIVELT
                     AKMSKANEDQIKSIESQIATLNAQASTIQAQIQELQSQQA"
     gene            6882..7754
                     /locus_tag="SB815_001191"
     CDS             6882..7754
                     /locus_tag="SB815_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG0906925.1"
                     /translation="MGVFLVLLGGIFWAISGVLAEYLFKNNYSVDWVCFYRLLSTGLI
                     LIFLSFKAQKILVFTNLKESLSICMFGFFGLLLTQFGYFKAIYYTDAGTATMIQYCAP
                     LIIMLYLCFKNKKFPKLIEIFALILIIFALFLLATKGDIEAVVLNYWGIFWAVIGAFG
                     VAFYSLSAREVILKYGLFWIMGWASLFASFVFLLILQFDKGLIHYAFNLKAFFSMGGI
                     VFIGTIGAFCLYLKGVEYIGALRASMIASIEPVAAALMSFLFLKTRYSLLDIFAFVLI
                     ILSVILNAKKTKVS"
     gene            complement(7741..8307)
                     /locus_tag="SB815_001192"
     CDS             complement(7741..8307)
                     /locus_tag="SB815_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEG0906926.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELSFECKVIKNDAFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKAIKYFKKNKKILGICLGHQCIAEIFGGRVSKMQNP
                     MHGKISKLYFKKDPIFKGIKKEIEICLYHSLHISSMPEKCKILAHNSENIIMAIKHKK
                     YPIYGLQFHPEAVLTQKGKKILKNFMKL"
     gene            complement(8304..>8826)
                     /locus_tag="SB815_001193"
     CDS             complement(8304..>8826)
                     /locus_tag="SB815_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEG0906927.1"
                     /translation="LDEKIFHKKHSLFYNFPLPFKNPHKEGILKLILYKDGRYEFQQS
                     ALKQNSNDILLLSDDKINSKSDNLYHKSSLRTFYNQHSYKWQQNLCYDIAFFNEKDEL
                     CEGSRTNLILEKNSQFYTPQIQSGMLNGVYRNFLINLGLIKEKALFKQDLFEAENIYC
                     INSVRGLKKVKLQ"
BASE COUNT         2765 a         1311 c         1422 g         3328 t
ORIGIN      
        1 acactaaaaa aagctatttc atagcttaaa aatgtatcta atttaaaatg atttaacgat
       61 gaaaatatga tccaaaaaaa taaatgaata atggcaaaaa tacaaaatag agctttttta
      121 tgttccatta tttgttcttt tctttttgaa ttttttcttt gatcaactca tctctttctt
      181 taaattcttc atagcttttt acttgaactt tataagcttt gtaaacatta agtatagcag
      241 cactgatccc ccaaaaaact ccaagccaaa aaagccaagg ataaggagta aattttttaa
      301 gtaaatatcc tattcccaca cctataaata cagcaacaac catagagatg ccaagactta
      361 aaccatccgc agcttcaaga gttttgcgaa tgattttttg tcttttgctg ttggaatttt
      421 ctaagtgatt tttttcttct tttaaaatat tgctcatatt cttttaaagc tttccctaac
      481 agcctctaat gttgtatcta taattttatc atccattttt gaacatataa agcctgtttc
      541 aaattgagaa ggtgctaaat aaattccatt ttcaagcata tttttgtgaa attttgaaaa
      601 taatgctaga tcagatttta atgcatcttg gtagtttgat acaggatctt tggtgaaaaa
      661 gtatccaaac atagaaccta catgacaagc ttgcagcgga agtccttttt catctgctaa
      721 ttttttcatt ccttgtgtaa gtttttttgc taattttcca agtttgtcat aaagcttggt
      781 tttctttttg gcttttgtaa gacttgctat acctgcagcc attgccaaag gatttccact
      841 taaagttcct gcttgataaa ctccacccaa aggacttaaa atatccataa tttcagctct
      901 agaagcaaat gctgctgcag gtagaccgcc tcctattacc ttaccaaaag taattatatc
      961 tgcttggata tgattgattc cataggaacc aaggtaagat gctctatatc cactcattac
     1021 ttcatcaaaa atcagcagag tttgattgtt tttacagatc ttagcaagtt cttctaaaaa
     1081 atcttgttta gctggaacta accccatatt tccagcaata ggctcaatga taacacatgc
     1141 aatatcttta tttttttcaa aaagctcttt aacgctattt atatcattat atttagctac
     1201 taaagtgtgt ttagctacat cttctaaaac acccaaagaa ctaggagagt taaaagtagc
     1261 agcaccactt cctgcactca ctaataatga atcagaatgc ccgtgataac atccttcaaa
     1321 ttttaaaatt ttatcttttt tagtaaaacc acgggcaaga cgaatagcac tcatggttgc
     1381 ttctgttcca ctgcttacaa agcggatctt ttctaaatga ggaaaatcag ataaaacaag
     1441 cttggcaagt tcagtttcta ataaagttgg agctccaaaa cttgaacctt tatgaagtgc
     1501 tttttgacaa gctttttgta tatctttatc gcaatgtcca aaaagcaaag gcccccagct
     1561 ttgaacatag tctatataag aatttccatc tatatcgaaa atataagcac cttttccatg
     1621 agaaataaat tttggctcac tttgaacatt tgcaaaagca cgaactggag aatttacacc
     1681 acctgcgatg aatttacacg tttctttaaa agcttttttg tttgtcattt ttcttccttg
     1741 ctaaattgct tgatgtaatt atataaagtt acaatttcat catttgttaa agagtaattt
     1801 ggcatgattg attttgcgtc tttactctga ttaagagaat ttttaaaatt ttcaaaacta
     1861 agattttgta tacttggaac tttataagct gttttaatac catttttcat ataatatcct
     1921 aaaatttgtt cgcttccatc tgctccatga cattctttac aactaatgcc ccttggattt
     1981 tcataaagca ttttagagta ttctttaaga gtgataaaat cagcaccaaa aagactaata
     2041 ctaaataaaa aaaacattaa aacaattttc aaagtttcac cttgttaatg aagttttaat
     2101 atgatacaat ttttacttta aaaaagtgat taaatttata gaaggaaaat aatgactttg
     2161 cttgatggta aagctttaag cgcaaaaatc aaagaagaat taaaagaaaa aaatcaattt
     2221 ttgaaaagca aagggattga aagctgttta gctgttatct tggttggaga taatcctgca
     2281 agtcaaactt atgtaaaatc taaggctaaa gcctgtgaag aatgtggaat taaatcttta
     2341 gtttatcatc ttaatgaaaa tattacacaa aatgaacttt tggcattgat taatacctta
     2401 aatcacgatg atagtgttca tggaattttg gttcagcttc ccttacctga tcatatttgt
     2461 aaagatttaa tacttgaaag tattataagt agtaaagatg ttgatggctt tcatcctatt
     2521 aatgtaggat atttaaattt aggcttagaa agtgggtttt tgccttgtac tccacttgga
     2581 gttatgaagc ttttgaaggc ttatgaaatt gatttagaag gaaaagacgc tgttattata
     2641 ggtgcttcaa atatagtagg tcgtcctatg gctactatgc ttttaaatgc tggagctaca
     2701 gtaagcgttt gtcatattaa aaccaaagat ttgagccttt atactaggca agctgatttg
     2761 attatagtag cagcaggttg tgtgaattta cttcgatcgg atatggtaaa agaaggagtg
     2821 attgttgttg atgttggaat caatcgtctt gaaagtggaa agatagttgg agatgtagat
     2881 tttgaagagg tatctaaaaa atctagttat ataactcctg ttccaggtgg agtaggtcct
     2941 atgactatag ccatgctttt agaaaacaca gttaaatctg ctaaaaatag acttaattag
     3001 ggaaaatcta tggaaatttt aaagaaatta tataaatttt cacagtcttg gactggaact
     3061 gtagttattg ttcttttggt gatttttttc tttatacaag cttttgttat tccttctggt
     3121 tctatgaaaa acaccttatt agtaggggat tttttatttg ttaaaaaatt tagctatggt
     3181 atcccaactc ctcatattcc ttggttggaa attcctgttt tgccggattt taataaagat
     3241 gggcatttga taaaagcaca agggccacaa agaggagata tagttgtttt tagaaatcct
     3301 agaaatgaaa aagaacactt tgtaaagcgt tgtgtaggca caggaggaga taggatagtt
     3361 tatgcaaata aaacacttta tgtaagaatg catgagggtg atgaatttat gaaagaacat
     3421 tatccgaatg atcttgttac tcttggaggg caaatttatg taaaagaacc ttataaacaa
     3481 aaaggtattc attatgatcc aaaaaaagat atagaaagcg atattttacg ctttcttagc
     3541 ataggtgatt ttgccatgtc tccagcttat attaaagaac ttggaaatca tataggtttt
     3601 agcggcggaa atgcttatgt ttttgatgta cctgaaaatg aatatttcat gatgggtgat
     3661 aatcgcgatt attcttatga tagtcgtttt tggggttctg ttccttatag gttgatagta
     3721 ggtaaacctt ggtttgtata tttctcttgg gataaagata aaaatgttcg ctgggaaagg
     3781 atagggcgtt ttgttgatac cttggaaaac gatgaacaat atatccatga tcatgatgat
     3841 gaggataaat taagctaatg tttgtgaaaa acacaaacat tatattttta aaagcgtgat
     3901 ttcatcacct ttttttaatt cacctgtatt ttcttcgctt ataagcaaaa actcactttt
     3961 aataagtgga agtatcatac cagagccaaa tttgttttcg ttaaatggtg taaaaatacc
     4021 tttttctaaa tttcctaaaa tgagattatt tcttccgctt ttaagcttta aatccatacc
     4081 cattttgcca taaaatgtta aaggattgtc taggtttcca cttaataaat taatgatttt
     4141 tttagcaaaa ataaaacaag aaagataagc tgccataggg tttcctggta aaatcaatac
     4201 gaaattttca ccttttctat aaagcttagt aggtcttgca gggcgtgctt ttaaaccttt
     4261 aaaaagcgga gtaaagccta attcatctaa agctttttcc ataaaatcag cctcgccaac
     4321 gcttgcacct cctgaagtga ttaaaagatc aaaatttgta ttttctaaag cctctttagt
     4381 gcttttaaaa tcatctttga taatacccaa ataagaagca ttttgaagca tagttagtaa
     4441 aggcaaagca ttggcattat aaatactttc ttcatcgcat tcttgccaag gttcttttag
     4501 ctcatttcca cttgaaaaaa tacctatgcg aatttttctt atgacttcta ttttataaag
     4561 cccttgagaa gcaagcaggg cgatatgttt atcattaagt ttggtacctt tttgaagtaa
     4621 aatttcacct ttttttaatt cttcaccttt ataacgatag gcattgtatt gtttaggaac
     4681 ttttttaatg atgagtttat tttcttctat acactcatct tctagcatta agatagtatc
     4741 agcatttttg ggcattttag cccctgtcat gattttatag cattcatttt tagcaactgt
     4801 ataaaaattt ttatctcctg caaaaatagt ccctttaatc tccaaagcct cattgatatc
     4861 agtataatta aaagcatagc catcaagagc agcattgtca aaactaggta gattttttct
     4921 agcgtataaa tctttagcta aaattctatc ctttgctttt tcaaggctaa taagctcact
     4981 ttcatctaaa catgaaattt gattttctaa gtcttttaag gtttcaaaga tatttttcat
     5041 tcttcaagcc ttgtgatttt cgcacccaaa tctttaaatt tttcttctaa attttcataa
     5101 cccctatcaa gatggtaaat tctatggact ttgcttgtac ctttagctgc aagagctgct
     5161 aagataaggg ctgaagaagc gcgcaaatct gtagccatga catcagcagc gttaagttct
     5221 tttccgccta ctatagtagc aatatgacca ttgagtttaa tatccgcacc cattcttaaa
     5281 agttcactta catgcatgaa acgattttca aatagtcttt catcaataat actagttcca
     5341 ttagctttta aagctagtgc cataaactgc gcttgcatat cggttggaaa gcctggatat
     5401 tcacttgtca tgatttctac aggtttaatt tctttagcag gaagtagggt gatactatct
     5461 tctgtaatca aagtttcaaa acccatttga tgaagttttg ctaaaactgc actaagatga
     5521 gtagcgttaa ctttatctaa agtaatttta gaatttgtaa tagcccctgc acaaagataa
     5581 gttcctgcct caattctatc aggtataacg ctaaattctt taaattctaa aagttctcca
     5641 tcgctaccat aaatttcaag ttcatctgta cctatgcctt taatttcaag tcctgcgtct
     5701 tttaaaactt cgcaaagttg aactacttcg ggttcttttg caacatttaa gagtttggtt
     5761 ttacctttag ctagagctgc tgccatgatg atgttttcac tacctgtaac cgtgatttta
     5821 tcaaaaagaa tttcattgcc ttttaaattt ccactagcta cgacatagcc ttgtttgatt
     5881 tgtatatttg cccccatttt ttctaaggct aaaagatgta aatcaatagg tctttgtcct
     5941 atggcacatc caccaggcaa agatacttca caatgcccaa aacgagcaag caaaggccct
     6001 agagtaagta tagaagcacg cattttacgc acaatgtcat atttagctat ggtttgatta
     6061 agagtgtttg tgtttaataa agcactattg ttttgaaaat tgactttagc tcctaaattt
     6121 tctagcaaag atataagagt ttttatatca gcaacattag gaacattgtt gatttttact
     6181 tcatttttag caagtatact tgaaacgatc aagggtaggg cagcattttt tgctccgctt
     6241 attgtaacat ttccgcttag atgatttgtg ccttcgattt ctagataagt catatttttc
     6301 cttgaaaaag tttaaaaatg catcattata gcattcttaa acttttgaaa aaatataatc
     6361 aagcttgttg gctttggagt tcttgaattt gagcttgaat agttgaagct tgggcattta
     6421 atgttgctat ttgactttca atacttttga tttgatcctc attagcttta gacattttcg
     6481 cagttagttc aacaattttt gcttgaattt ctgcaagctt ttgtgttaat tctgtaagtt
     6541 tatcttcact attgctgcta ctatcttgtt gcgtgttgtt ttgtgcgttt aaagcttgag
     6601 ctggagcttg agaattgttt tgattagaag tatttgattt ttctttggct tctttgctga
     6661 tatttacctc tacagctgga tcttgcgcta aagcgttttg ttcttgattt ttagagtttt
     6721 gattttcttc gtttgagttg actttaacat attgacttaa gctatttaag gaattgttaa
     6781 tttgcatatt ttctccttaa tttataatat atattacact aaatcgacat tattttaaaa
     6841 aaatatacta taatttaaaa taatttttat taaggtttgc aatgggcgta tttttagttc
     6901 ttttgggagg tattttttgg gctattagcg gtgttttagc tgaatacctt tttaaaaata
     6961 attatagcgt agattgggtt tgtttttata ggcttttatc tacagggttg attttgattt
     7021 ttttaagttt taaagctcaa aagattttag tttttacaaa tttaaaagaa agcttaagta
     7081 tttgtatgtt tggatttttt gggcttttgc taacacaatt tggttatttt aaggctattt
     7141 attataccga tgctggaact gcaacaatga tacaatattg tgcacctttg attataatgc
     7201 tttatttgtg ctttaaaaat aaaaaatttc ctaaattgat agaaattttt gctttgattt
     7261 tgattatttt tgctttgttt ttgcttgcaa ctaaaggaga tattgaagcg gtggttttaa
     7321 attattgggg tattttttgg gctgttatag gagcttttgg agttgctttt tattctttaa
     7381 gtgctagaga agtgatatta aaatatggtc ttttttggat aatgggttgg gcgagtcttt
     7441 ttgcttcttt tgtattttta ttaatcttgc aatttgataa gggtttaatt cactatgctt
     7501 ttaacttaaa agcatttttt tctatgggtg ggattgtctt tatcggaact ataggggctt
     7561 tttgtttgta tttaaaagga gtggaatata taggtgctct aagggctagt atgattgcct
     7621 ctatagagcc tgtagcagct gctttgatga gttttttatt tttaaaaacc cgttatagct
     7681 tgcttgatat ttttgctttt gttttgatta tattgagtgt tattttaaat gcaaaaaaga
     7741 ctaaagtttc ataaagtttt taagtatttt tttgcctttt tgagttaaaa ccgcttcggg
     7801 gtgaaattgc aatccataaa taggatattt tttatgttta attgccataa taatattttc
     7861 tgaattatga gctaaaattt tgcatttttc aggcatggaa ctaatgtgta aagaatgata
     7921 taagcaaatt tcaatttctt ttttaatacc cttaaaaata ggatcttttt taaaataaag
     7981 tttagaaatt ttaccatgca tgggattttg cattttagaa accctaccgc caaaaatttc
     8041 agctatacac tgatgtccta aacatatacc taaaattttt ttattttttt taaaatattt
     8101 gattgctttt aagcttaatt tagattcctt aggagaatga gggccaggag agatgataag
     8161 atgagtgaaa tcaaattttt ctaattcttt agctttttta aaggcatcat tttttatcac
     8221 tttacattca aaactaagtt ctttaagata atagatgatg gtataactaa aagaatcata
     8281 attatctata aataaaattt tcttcattgt aattttacct tttttaaacc acgcacggaa
     8341 ttaatacaat aaatattttc tgcttcaaat aaatcttgtt taaataatgc tttttctttt
     8401 atcaaaccaa gattgattaa gaaatttcta tatactccat ttaacatacc gctttgaatt
     8461 tgtggagtat aaaattgaga gtttttttct aagatgagat tggttcttga gccttcgcaa
     8521 agttcatctt tttcgttaaa aaaagctatg tcataacaca agttttgctg ccatttgtat
     8581 gagtgttgat tataaaaagt acgcaaagag cttttgtgat agagattgtc actttttgag
     8641 ttaattttat catcacttaa aagcaaaata tcgtttgaat tttgctttaa ggcactttgt
     8701 tgaaattcgt atcttccgtc tttgtataaa ataagcttta aaattccttc tttatgtgga
     8761 tttttaaagg gtaggggaaa attataaaat aaagagtgtt ttttgtggaa aattttttca
     8821 tcgagt
//
LOCUS       DARBAR010000068         8501 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.068, whole genome shotgun sequence.
ACCESSION   DARBAR010000068 DARBAR010000000
VERSION     DARBAR010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8501
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.068"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            37..1044
                     /gene="rlmN"
                     /locus_tag="SB815_001194"
     CDS             37..1044
                     /gene="rlmN"
                     /locus_tag="SB815_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEG0906928.1"
                     /translation="MFRVKQIYQWIYQKYANNFSDMSSLPKYLRLELARNFHFSPVKC
                     VKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDAEGKRISHARYTICVSSQVGCK
                     SGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPYERRVNIVYMGMGEPLDNLKNV
                     SKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQMNLGVLLAISLHAVNDELRTEL
                     MPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGINDKLEHAKELVKLLNGIKAKV
                     NLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTIRESKGLDISAACGQLKERAKE
                     Q"
     gene            1041..1139
                     /locus_tag="SB815_001195"
     CDS             1041..1139
                     /locus_tag="SB815_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906929.1"
                     /translation="MTMLDIFEIIFITTVVIIGFGGIVFVVTKEKK"
     gene            complement(1153..1229)
                     /locus_tag="SB815_001196"
     tRNA            complement(1153..1229)
                     /locus_tag="SB815_001196"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1193..1195),aa:Met,seq:cat)
     gene            1365..1452
                     /locus_tag="SB815_001197"
     tRNA            1365..1452
                     /locus_tag="SB815_001197"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1399..1401,aa:Ser,seq:gga)
     gene            1499..1574
                     /locus_tag="SB815_001198"
     tRNA            1499..1574
                     /locus_tag="SB815_001198"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1532..1534,aa:Ala,seq:ggc)
     gene            1578..1653
                     /locus_tag="SB815_001199"
     tRNA            1578..1653
                     /locus_tag="SB815_001199"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1611..1613,aa:Val,seq:gac)
     gene            1681..2211
                     /locus_tag="SB815_001200"
     CDS             1681..2211
                     /locus_tag="SB815_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG0906930.1"
                     /translation="MQNTIIQKAVNKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFKPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(2191..2793)
                     /gene="leuD"
                     /locus_tag="SB815_001201"
     CDS             complement(2191..2793)
                     /gene="leuD"
                     /locus_tag="SB815_001201"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEG0906931.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLEIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(2795..4207)
                     /gene="leuC"
                     /locus_tag="SB815_001202"
     CDS             complement(2795..4207)
                     /gene="leuC"
                     /locus_tag="SB815_001202"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEG0906932.1"
                     /translation="MTMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSMDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYTKDLILYLIAQYGTAKGTGYAIEFCGELIRNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ASITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALYYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(4194..5270)
                     /gene="leuB"
                     /locus_tag="SB815_001203"
     CDS             complement(4194..5270)
                     /gene="leuB"
                     /locus_tag="SB815_001203"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEG0906933.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIARIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENDNG"
     gene            complement(5267..6802)
                     /gene="leuA"
                     /locus_tag="SB815_001204"
     CDS             complement(5267..6802)
                     /gene="leuA"
                     /locus_tag="SB815_001204"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEG0906934.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYESEEENE
                     FVLEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPALKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGLSTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            7122..7751
                     /locus_tag="SB815_001205"
     CDS             7122..7751
                     /locus_tag="SB815_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906935.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(7775..8419)
                     /locus_tag="SB815_001206"
     CDS             complement(7775..8419)
                     /locus_tag="SB815_001206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEG0906936.1"
                     /translation="MNKKFLSIIAGIALFSSSAFAEEKSGFFIGADAAYVQTKVQGNL
                     KHNQTGAVFNGDLSSSIPILGLKAGYRFNDLHRLYLAYNYSDEFSDIIRTPKLKIESD
                     FSTHKFLMGYDFTPKIFERVRAVAGGYLGYAKTNLDLKTSLLSLSQKFDGFVYGVKIG
                     AIFELGASNEIEAGFKVEKIEYNTRDFYQKAIGSNLYDPRQTNYGLYLGYTYKF"
BASE COUNT         2858 a         1572 c         1224 g         2847 t
ORIGIN      
        1 tttttacctg aagaattagg agaaaaaatc aaaccgatgt ttcgcgtgaa acaaatttat
       61 caatggattt atcaaaaata tgccaataat ttttccgata tgtcaagttt accaaaatat
      121 ctacgtttag aacttgcgcg aaattttcat ttttctcctg taaaatgcgt taaaaatgag
      181 caaagtaaag atggaagtat aaaatatctt tttgaactta tcgatggttt aagggtagaa
      241 agtgtgcttt tgcctatgaa agaagaaaaa atagacgcag aaggcaaaag aatttctcat
      301 gcgagatata ctatctgtgt ttcttctcaa gtaggttgta aaagtggatg tagtttttgt
      361 cttactgcca agggtggttt gaaaagaaat ttaagtgcag gtgagatagt cggacaaatt
      421 ttatggatca aaaaacaaaa caatatccct tatgaacgcc gtgtaaatat agtatatatg
      481 ggtatgggcg agcctttgga taatcttaaa aatgtttcta aagcggtaaa aattttagcg
      541 caaaatgagg gacttgctat aagtcctcgc cgtcaaacca tcagtactag cggtttggca
      601 aaacaaatca aagaattagg tcaaatgaat ttaggtgttt tacttgctat atcattgcat
      661 gcggttaatg atgagcttcg aaccgaactt atgcctatca ataaagctta taatatcgct
      721 gcgattatgg atgcggtgcg tgaatttcct atagatcaaa gaaaaagagt gatgtttgaa
      781 tatcttttaa ttgatggtat caatgataag cttgaacacg ctaaagaatt agtcaagctt
      841 ttaaatggca ttaaagccaa agtgaattta atactcttta atccacatga aggaagttta
      901 tataaacgcc ctagtttaga aaatgcgatt aaattccaag atttactaag taataaaggt
      961 gtaacttgta ctataagaga aagtaaagga cttgatatct cagctgcttg tggacagctt
     1021 aaagaaaggg caaaagaaca atgacgatgt tagatatttt cgaaatcatt tttataacaa
     1081 ctgttgtaat tataggtttt ggtggaattg tttttgtagt aacaaaagaa aaaaaataat
     1141 tattacattt aatggtgtca agggggagac ttgaactccc gacctccggc ttatgagacc
     1201 agcgctctaa ccagctgagc taccctgact aaaaataaaa atataattat actacttttt
     1261 actaaaaatt ttctgatttt taaaaaaaat aattttattt tcaatattta aaaaatttct
     1321 ttatttttaa agcttttata gatataatga acgctttatt tcatagacag gtgtccgagc
     1381 ggttgaagga gcacgcctgg aacgcgtgta aagtgcaagc tttcgagggt tcgaatccct
     1441 tcctgtctgc catcaaataa actttaaggc aaactaagtt ataatacaaa cttcatttgg
     1501 ggcattagct cagctgggag agcacaacgc tggcagcgtt ggggtcagcg gttcgaaccc
     1561 gctatgctcc accatatggt tccgtagctc agctggtaga gcactacctt gacatggtag
     1621 tggccgttgg ttcaagtcca atcggagcca ccatcaccct tccttataca aaggattatc
     1681 atgcaaaaca ctatcataca aaaagccgtc aataaagatt taaattctat acttgaaatc
     1741 acaaaagatg ctttaaatgc tatgaaaact atgaattttc accaatggga tgagaattat
     1801 ccaaatgaaa tagtttttca agaagatata caagcacaag aactttatgt gtttaaagaa
     1861 aatgatgaaa ttttaggctt tatctgtatc aatgaaaaat ttaaacctga attttacaaa
     1921 caagttattt ttaacaaaaa ttatgatgat aaagcctttt atctacaccg tttagctgtc
     1981 aaacaaaatg caaaaggcaa aggcgtggca caaaaacttt taaatttttg cgaaaatttt
     2041 gccttggaaa atcacaaggc aagtttaaga gcagatactc atagtaaaaa ttttcctatg
     2101 aattcgcttt ttaaaaagct tgattttaat ttttgtggaa actttgacat acctaattac
     2161 caagatcctt ttttagctta tgaaaaaatt ctaaaccaaa aagctttttg agtttttttc
     2221 ataggctttg atttgtgctt catgttttaa agttaaagct atattatcaa gcccttccaa
     2281 aagacaaatt ctgtgaaaat catctaaatc aaaagaaaaa atcttatctt taaaaaatac
     2341 tcttttttcc aacaaagaaa tttctatatt tttatcttgg gattttttta actcatcaac
     2401 tatttccaaa acctcatctt tagcaagttc tatagtgagc aaaccgtttc ctaaggcatt
     2461 gtttttaaaa atatccgcaa aagaaggtgc gataatagct ctaataccat aatcaaccaa
     2521 agcccaaggc gcatgctctc ttgaagagcc actaccaaaa ttttcaaaac tcaccaaaat
     2581 agagctattt tgatattctt ttttattgag attaaaatcc atatttaaaa cactttcttt
     2641 atcatctaaa taacgcaaat catggaacaa atgcttgcca aaaccttgct tagacactgc
     2701 aagtaaaaat tgcttaggta taatttgatc tgtgtctata ttggcatatt ctaaaggaca
     2761 agctatacct ttgtgtataa taaatttttg catattaaac tcctaaatac tttctattat
     2821 cacaaataac accttctatg gcacaagctg ctgcacttgc aggactcatc aaatgagtga
     2881 tagaaccttt accttgtctg cctacaaagt tacgatttga agttgaagca actctttgac
     2941 ctgaatttgc tttgtcatca ttcataccaa gacacataga acaccctgca tatctccact
     3001 cacaccctgc ctcgataaaa atcttatcaa gtcctaaatt ttcagcttct tttcttactt
     3061 gcattgaacc aggcacgatt aaagctttaa catttttatg aattttgcgc ccttttaaga
     3121 tatcagcagc tattttaaga tcttctaaac gcccatttgt gcaagatcct ataaatacaa
     3181 tgtcgatttt taccccttct ataacttgat cttgctctaa atttacataa tataaagcat
     3241 caagcaaaga tttttgctcg ctttgatttt taaaatcact tatttttgga attttttcat
     3301 ctatgccaat cacttgcgaa ggatttgttc catagctaat ttgtggtttt atcttgctta
     3361 catctagagt aatactcgca tcatattttg ctccttcatc acttcttaaa ctcttccaat
     3421 actcacaata cttttgaaat tcttctcctt taggtgcaaa ttcctttccc ttaatatact
     3481 caaaagtgat ctcatcagga gctatcatac ctactttcgc tccaaattct atagccatat
     3541 tacaaagagt cattctagct tccatgctta gatttcttat aagttctccg caaaattcta
     3601 tagcatagcc tgtgcctttt gctgtgccgt attgtgcgat caaatacaaa atcaaatcct
     3661 tagtataaac gcctttttga aactgccctt tacattcgat tttcatagtt ttaagtttgg
     3721 cttgttttaa agtttgcgtt gccatgacat gctctacttc actcgtgcct ataccaaagg
     3781 ctaaagctcc aaaagcccca tgtgttgccg tatgagaatc cccgcaaact aaagtaaccc
     3841 caggtaaagt aaagccaagc tcaggaccta ctatatgaac tatgccttga tttttatctc
     3901 caagtcctaa aagccttact ccaaattcct tagtattttg catcaaagtt gtaatttgct
     3961 cttttgccat atcagaacaa gcatttaaat ccatactttt agttgaaaca tcatgatcta
     4021 tagtagccaa agttaaatcc gctcttgcca ttctacgctt agccatttta agccctgaaa
     4081 atgcttgagg gcttgttact tcatggatta aatgtctatc gatataaagt ataggaagtt
     4141 cgtttttgcc ttcataaacc acatgagcat caaagacttt ttcatataaa gttttagcca
     4201 ttgtcattct cctttaaaat ttctaaaata caatccccca tttcatcggt atttaaatac
     4261 gacttagcat ttaaatcctt agtcattttt ccttgtgcca atgccaaaga tatagcattt
     4321 tctatatcct gtgcggcttg ttcttctttg aaactatact ttaacatcaa agccgcactt
     4381 aaaatttgag ctatgggatt ggctatattt aaatgagcta tatcaggcgc acttccacct
     4441 gctggctcat aaagtccaaa acctttatca ttcaaacttg ctgaacttaa caaacccaaa
     4501 gatccattaa tggcagctaa ctcatcactc aaaatatcac caaaaagatt tgaacaaagc
     4561 ataacatcaa aaatgctagg attttttaca atctgcatcg cagcattatc cacatacatg
     4621 tactctaagt ttatatcttg ataatctttt gcaacatttg ccaccacttc tcgccacaaa
     4681 atagaacttg ctaaaacatt cgccttgtcg attaaatgga cttttttctt tcttattctt
     4741 gcactttcaa aagcgatacg agctatcctt tctatctctt ttttagtgta aatttcagta
     4801 tcatacgcac tttctttacc taaatcctgc ttaccaaaat aaatcccacc tgtaagctct
     4861 ctaacacata aaatatccac tcctttttgg ataatctcat tttttaaagg tgaagcatgg
     4921 gttaaacttt cataaatttt acaaggacgc aaatttgcaa acaaattaaa atgctttctt
     4981 aaaggcaaaa gcgaggctct ttcaggtctt tgatctatgg gcaaattatc ccatttaggc
     5041 ccacccacag aaccaaataa aatcgcatca ctttgctcac aaagctttaa agtttcatca
     5101 cttaaagcca ctccataagc atctatactt gcaccgccta ttttagcttc attaaattca
     5161 aaactaaaat tgtatttttg tgcgataaaa gttaaaattt ttaaagcctc tttcatcacc
     5221 aaaggcccta tgccatctcc tgctaaaaca gctactttat aagttttcat gccattttcc
     5281 tttcttctac ttttaaagag cgataaatcg cattgtaagc actcacaaaa gcttgtgctg
     5341 aagcttctat cacatctgtt gaaagtcctt ttccatggaa ttttctccct ttaaattcca
     5401 aatctacatc cacttgccct tgagcatcta ctcctgaact ttttgcattg atactataag
     5461 cttttagcgc aggctttaaa ttcgttatcc tagcaatgca gttaaaaact gcttcaacag
     5521 gaccatttcc tgtgcaagct tcagttttta gctcttcttt gatacgcata caaacacaag
     5581 cagttgggat atttccactg atcacactta atttttcaag cacaaattca ttttcttctt
     5641 cactctcata acttaaaaac atcaaagctt ctaaatcata atcatatact tgaccctttt
     5701 tatccgcaag gcgtaaaaaa cgctcataaa catcatctaa attataagta ttttcatcat
     5761 agcctaaatt ttcaaggcaa gtttttatca tagcccttcc acttcttgct gtcattaaca
     5821 tacgattttc atgaattcct atggcactag ggcttatgat ctcgtaagtt tgcctatttt
     5881 taagcactcc atcttgatga atgcctgaac tatgagaaaa cgcattgcta cccactatag
     5941 ctttatgtga aggtatgctt tcattagtga tagctgaaac caattttgaa gttttaaaga
     6001 tattttcaca tttaatatca gtataaaaac cttttaaata atcttttcta gtttttatcg
     6061 ccataaccac ttcttctaaa gcacaattgc ccgccctttc gccaagtcca tttatagtgc
     6121 actctatctg tcttgcacct tgtaaaatag cacttaaact attgcccgtt gccataccta
     6181 agtcattgtg acaatgcaca gaaataatag ctttgtctat atttggcact ttgttaaata
     6241 aaattttgat gatattagca aattcgcttg gcagagtata gcctacggta tctgggatat
     6301 ttatagtttt agcacctgct tttatcgcat tttccaccat aaaacaaaga ttatctatag
     6361 gcgttcttcc tgcatcttcg catgaaaatt ctacatcatc agtataagat cttgctctta
     6421 taatcgctct ttttgccata gacaaaattt catcaaaatc tttttttaat ttatcttgca
     6481 tatgcaaagt cgaagtggct ataaaagtat gaattctaaa atgctttgcc acttttaaag
     6541 cttcataagc catatctata tctttatcca atgctctaga aagtgcacaa atagttgagt
     6601 ttttaacctt agaagcgatc ttttgcaccg ctttaaaatc cccttgtgaa gataccggaa
     6661 aacctgcttc tataacatct acgcctaaat tttcaagcgc taaagcgatt tgtaattttt
     6721 gattgatacc caaagaactg cctaaagctt gttctccatc tcgcaaagtg gtatcaaaga
     6781 ttatgatttt attatctttc atgatttaat cctttaaaac caaacagact gaatgaatta
     6841 aaaattcaaa aacttaacaa caacaataaa aaattaaaaa tgtaaaaaat gattaaaaat
     6901 aaaattgagt tttagagtga gagttgcagt agcagattaa aagtattgtc tttacttttt
     6961 tgttgaactg aatttgaaat ttcaaaaatt tgtttcatct tttcctcctt tgttaaaatt
     7021 aatacttaat gtatcatatt tttagtaaat gtgtttgtaa aattcttaaa ttaagaaaat
     7081 tattgatata attgtaattt taagtaacaa aaaggaagtt gatgttaaaa gaactcttag
     7141 agattaaaaa agaaatggaa cctgttatcc acgaagccaa tgtgaaatta aatgtcctag
     7201 ctcgtgaagt catagtccga aaaaaagaat acgaaattta tgggcctatg gtagatcgtg
     7261 tttatcttga taatgccatt tatgttaaag ttatgtcaag tggacgcgat gtaaaaacag
     7321 acaatgtgac tataaaaaat ggtttttata tggtttttgt tgcccctgaa aaagaaagta
     7381 caaaagatat caaaaataaa ctcaaagtag cttatgaagg acttgataac aaatttatcg
     7441 ctacacttat acgatcttgc caacgcttta aagagatcat aaacaaaacc caagctacac
     7501 ttgctaaagc ttctaaaatg aatgtggtag taaaaacgaa tttaggtgaa gcaagtgctg
     7561 ctctaaaatt taacatcact atagaatata ctaaagagaa tcaaaaactc actcgtgaaa
     7621 attcaaaatc agcaggaagt ttcagagata ctaaaactta tatcaatctt gtagtagaaa
     7681 aaaatacaga ttctcaaatt tgtgaaaaac tacttgatga tgttgaaaaa tactttatcg
     7741 gtggaggttg aaatcctacc gataaaatac ttcattaaaa tttataagta tagcccaagt
     7801 ataagccgta atttgtttgt cttggatcgt ataaatttga tcctatagct ttttgataaa
     7861 aatctcttgt attatattcg attttctcta ctttaaaacc tgcttcgatt tcattagaag
     7921 cacctagctc aaatatagca ccgattttaa ctccatacac aaaaccatca aatttttgag
     7981 ataaagacaa taaggatgtt tttaaatcaa gatttgtttt tgcataaccc aaatatccac
     8041 ctgcaacagc tcttactctt tcaaaaattt ttggagtaaa atcataaccc atcaagaatt
     8101 tatgcgtact aaaatcactt tcaattttaa gtttaggagt tcttataata tcgctaaatt
     8161 catcagaata attataagca agatataatc tatgcaaatc attaaaacga taacccgctt
     8221 ttaaacccaa aataggaata ctgctagaca aatcgccatt aaaaacagca ccggtttgat
     8281 tgtgttttaa atttccttga actttagttt gaacataagc tgcatccgca cctataaaaa
     8341 agcctgattt ttcttcagca aaagccgagc ttgaaaacaa tgctatacct gcaataatgc
     8401 ttaaaaactt tttattcatg gtttgcctcc ttgaatagaa ttttgaggtg atattgtatt
     8461 atattgataa ttagtatagt attattttta ttactttttc a
//
LOCUS       DARBAR010000069         8488 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.069, whole genome shotgun sequence.
ACCESSION   DARBAR010000069 DARBAR010000000
VERSION     DARBAR010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8488)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8488)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8488
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.069"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            70..1416
                     /locus_tag="SB815_001207"
     CDS             70..1416
                     /locus_tag="SB815_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEG0906937.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFVDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLVCNYLGMEFNEDKFSSELL"
     gene            1465..2907
                     /gene="pyk"
                     /locus_tag="SB815_001208"
     CDS             1465..2907
                     /gene="pyk"
                     /locus_tag="SB815_001208"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEG0906938.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRRVAKELHTRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVVNIDNQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            3005..3640
                     /locus_tag="SB815_001209"
     CDS             3005..3640
                     /locus_tag="SB815_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906939.1"
                     /translation="MQVNTFSNIASMARTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSSKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQNTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(3671..6133)
                     /gene="pflB"
                     /locus_tag="SB815_001210"
     CDS             complement(3671..6133)
                     /gene="pflB"
                     /locus_tag="SB815_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HEG0906940.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSESGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVIMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DAGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(6143..7378)
                     /gene="serS"
                     /locus_tag="SB815_001211"
     CDS             complement(6143..7378)
                     /gene="serS"
                     /locus_tag="SB815_001211"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEG0906941.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKIA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFMRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDVLKKYF"
     gene            complement(7389..8348)
                     /gene="trpS"
                     /locus_tag="SB815_001212"
     CDS             complement(7389..8348)
                     /gene="trpS"
                     /locus_tag="SB815_001212"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEG0906942.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(8345..>8488)
                     /locus_tag="SB815_001213"
     CDS             complement(8345..>8488)
                     /locus_tag="SB815_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEG0906943.1"
                     /translation="PLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEIKK
                     VIK"
BASE COUNT         2990 a         1414 c         1230 g         2854 t
ORIGIN      
        1 ttttgtaaaa caaattcaat taaacttcta tttagaaaaa agtttattaa aataaaaaaa
       61 ggaaaaacaa tgagccaaca agaatttgat gtgcttgtca tcggagctgg aatttcagga
      121 gcagcattat tttacgagct tgcaagatat acaaatatta aaaatattgc tttgatagaa
      181 aaatataata cagctgcaac attaaattct aagggaacga gtaattctca aaccattcat
      241 tgtggagata ttgaaaccaa ttatacttta gaaaaagcgc gaaaagtaaa aagaacagct
      301 gatatgatag ttaaatatgg actcatgcaa aatgcgcaaa ataatttcat gttttctcat
      361 caaaaaatgg ctctagctgt tggagatata gaatgtgatt atatgaaaaa acgctatgaa
      421 gaatttaaag aactttatcc ttatataaaa tttttcgata aagcaaaaat caaacaaatt
      481 gaacccaaag ttgttttagg agaagattgc aatcaagata gacctgaaaa tatctgcgcc
      541 atgggtgttg aaagcggcga ggtttttaca actgtagatt ttgggaaaat gagtataaat
      601 ctaatagaac aagctcaaaa acaaaataaa aatactttcg ttgcctttaa tcaagaaatt
      661 attcacatag aaaaaaagga tgatattttt atattaaaaa cctcaaatca tcaagaatac
      721 catgccaaaa gcgtagttgt caatgctgga gcgcactctt tatatttagc acataaaatg
      781 aacttaggta tggataagtc ttgttggcct gttgcaggaa gtttttattt aaccaaacaa
      841 aaacttttaa atggtaaggt ttatatggtg caaaatccta aacttccatt tgcagctctt
      901 catggagatc ctgatttgct tgctgatatg aacacccgct ttggacctac cgcacttgtt
      961 attccaaaac tagaacgtta tcatggtcta aaatcagttc cagaattttt tgaagcacta
     1021 aaacttgata aaactgtttt aaaagtaact tttaatatgt ttaaagatgc aacaattaga
     1081 aattacatct tttataatta tctttttgaa ctaccttttg ttgataaaag cttatttgtt
     1141 aaagatgcca aaaaaatagt cccaagtctt aaagcaagcg atatttatta tgcgaaaggt
     1201 tttggaggcg taagaccgca agttattgat aaaactaaag gagaattaat gctaggtgaa
     1261 gcaagcatca cagaaacccc tggtattatt ttcaatatga ctccaagtcc tggagcaaca
     1321 agttgtctag gaaatgctga aagagatgca aagcttgtat gtaattacct aggaatggaa
     1381 tttaacgaag ataaattttc ttcagaatta ttgtaatcat tttgtttcta tttttagcta
     1441 caataatttc aaaaggagtt taccatgctt aaaaaaacaa aaattgtagc cacagtaggt
     1501 ccagcaagtg aaaaggaaga aattctacgc caaatgatta tcaatggtgt aaatgttttc
     1561 cgtttaaact tttctcatgg aacacatgag tatcataaaa aaaacttaga taccataaga
     1621 agagtagcta aagaattgca tactcgtatt ggaattttac aagacattag tggtcctaaa
     1681 attcgtacag gtgaacttaa agaaccattt gaattaaaaa agggtgatag acttgatttt
     1741 tatcgtgaaa caattttagg ggagaagatt gctcaaaatc attataaaat cagtatcaat
     1801 caaaaatcca ttttagatat gttaaaaatt gatgaatata tttatctgta tgatggatca
     1861 attcgtgcta aagtagtaaa tatagataat caaaaaattg aaaccattat agaaaatgat
     1921 ggttttttaa actcaaataa aggtattaat tttccgaata ctaaaatcaa tattgatgtt
     1981 attacacaaa aagataaaaa tgatttactt tggggtataa aaaatgaagt agatttttta
     2041 gcaatatctt tcgtacaaaa tgcgcacgat attgatgaag ttcgtgaaat tttagcacaa
     2101 aataacgcaa aaatatctat ttttgcaaaa attgaaaaat ttgatgcagt agaaaatatt
     2161 gatgagatta ttaaatctag cgatggtata atggttgcaa gaggagactt aggtattgag
     2221 gtaccttatt ataaagttcc taatatccaa aaagaaatta tacaaaaagc aaacaatgcc
     2281 tctaagcctg ttattactgc gactcagatg cttttttcat tagccaaaag caaaaccgcc
     2341 acaagagctg aaatttcaga tgttgcaaat gctgttttag atggaacaga tgcagtaatg
     2401 ctaagtgaag aaagtgccgt tggtatagat cctgcaaacg ctgttgatat aatgtgccaa
     2461 actataatag aaacagaaaa acgctatcca tataacaaat ttaatgattt taatgattta
     2521 gacaatacag ataaaatcat gcgttcttca gctcatcttg caacagatct taacgctgat
     2581 gctatttttt ctttaacaag tagcggaaaa tctgctatta agattgcgag atatcgtcca
     2641 aatatagaaa tcatagcagt agggcattct gaaaaaacct taaactcttt aagtatagtt
     2701 tggggagtta atcctgcaat cttggttaac aaaagtaatg aacttacaga attattaaaa
     2761 gactctgtaa gatcaagtgt tgaaaaaggt tttatggatg aagataaatg ctatcttcta
     2821 actgcaggct ttccaacagg agtagaaggt actagcaatc ttatccgcat tctcaataaa
     2881 gagcaaattg cttattatct acaataaaac attaaattcc tttgaaaata aggaatttaa
     2941 tgtccttata aattttttaa gtcaaaagtc gatataaatt aaagcctcac acaaaggagc
     3001 aaatatgcaa gtgaatactt tttcaaatat cgctagcatg gcacgaacac aagttagcaa
     3061 taagaaggca gatgatgcta aggaaaacac aaaagacaaa aatgttcaaa gtgctaattc
     3121 tagcaaggat gtagataaaa atacccttga aaaattaaat gcacttggtg gaaaaggcat
     3181 tacacaaatt tacctagttc agtttcaaca gcaaacaatg aatgctgtaa taggttcgag
     3241 caatgcccaa actggactag atagtctttt aaatggtgcc aatttagata ctgcgaaatc
     3301 tatacttaca aatattgatt ttgcatcctt aggctacagt agcaaaaatc cacttgatat
     3361 gaatacagat gaacttcaac aacttgtaag tgaagatggt ttttttggag tggaaaatac
     3421 agccaatcgc atcgcggatt ttgttattaa aggcggtggc gacgatgttg aaaaattgaa
     3481 aaaaggtctt gaaggtatga aaaaaggatt tgagcaagca gaaaaaatgt ggggtggaga
     3541 acttcctcaa atcagtcaaa atacaataga tgcggcactt aaaaaagtta gcgatcgcat
     3601 tgatgaacta ggcggaaaaa ctctagatct tcaagcttaa ctaaaaatgc ttagaaattt
     3661 ctaagcattt ttagttgtta ttaatatcaa aagtaaaaaa ttcactctta aaattattag
     3721 gtaaagtttt atactgagat atcgcagctt catagttctt tacttcttga tacaacatac
     3781 caagagctgc tttactctct ttgttatttt tatctgtaag tttagaaagc tgcaaaagcg
     3841 ctatagctga atttggatta tttgcaccta cggctgctac ggctgctaaa aataaagttt
     3901 tagtatcttt agctccataa tcatcaatca aagaattata aagcgcataa gcctcctcgt
     3961 attgctgtgc aaaaatatcc aaataagcta aagtttgtaa aataccctca tcttttgctc
     4021 ctgaaacatt aatcaactct ttaaatttct gtctttctaa atttaaaagc cctgcaatat
     4081 gcattaaatt aacataaaat tccctagcta tatttggccc accaaaaaca ctacgataat
     4141 caagttttaa atttttaaaa tgaatttgag cattttgagc atattcttta atatttaaat
     4201 ttgaatttaa agaattaaaa tacaaaatat ttgccaaaat atcttcaggc aactctgaac
     4261 gcaatttagc aattttcaca tctacttgat tattaaggtt attattttta gcaacaatag
     4321 cttcaaaaat caaactcaaa ggcgtatctt tttttgtttc atctaaataa ggaagcatag
     4381 aaatataatt attattaact aaaaataaca tacttttttg catattagct ttaaaattag
     4441 aatcagcagc tatattatca agaatttcat tgtaaagttt agttgtatca atatcaatta
     4501 attttgcaca aaacatagca aaagcacctg ctaagtaatt tttaggatta agatgatatg
     4561 aacttgaaaa atgcttataa gcaagttcat aattttgcat ttgggcataa gttaaagcca
     4621 aattataatg taaaatacta tgttctggat aatccttgat aagtttttga aattcttggt
     4681 tagcaaggcg taacttctga tttaatgcat agttaataat attggcaatt tttacattgg
     4741 tagatgaaag agccttgctt atattaagat aaattcccgc atcagtacta tcatcaacga
     4801 aatctgtaac attagctttt ttaatatata aagcagcctg cttactatca aaaacctgat
     4861 aaggtgcaaa ataaaaaagc aaatcgaatt gatctttttg tttttttagc aaatcttttg
     4921 aaaaagaatt ttgagcaact gctatattaa aaagatcctt atttaaacga acttgaattt
     4981 tataagtatc taaaatctta tatctatctt tatcgttatc ataagaattt tgcaagcgcg
     5041 ctaacatatc ttgataattt cctgttttaa tatcaaccaa tgttaaagcc gccaaactct
     5101 gattaaaatc tctttcaatt ttcatcgctg tacttaaagc gactttagct ttagcatatt
     5161 ctcctattct agcgtataaa agacctaaag ataaactaga ttcaaaattg ccttgagaat
     5221 ttaattgctg tatagccttg gaatcaaagt ccatttttgc ataaatttta gcagacaaat
     5281 actttgcaac atcagaatac ggctccacat ctgttctttg taacatttgt aaggcctcag
     5341 ggtaatatcc tttgtaataa ttaatcaagc ttaaataata atcatataat tttgattttc
     5401 cttcttttgg aagatacact tgagctaaat caatataata tctaaatttt tccttatcat
     5461 taagctttaa agcacaaaca gcagcattga tagcagctac actttgattt tctccattgg
     5521 ctatagcttt cttgaagctt tcaaaagctt cttggaattt attctcattc atttgagaaa
     5581 cgcctaaatt ataattagat aaagattcat tatatacggc aacttgctca taaactttta
     5641 aagcctgttc aacctcaccc tttaaatata aagcatttgc tttttggatc ataccatcaa
     5701 ttctttgcat atcattgtat ttatatgatt catcaggcat aataacaggt tgttctaaag
     5761 gcttagaagc tataatatct ggtttaattt ttccttcact aaaagttaaa taaaaaagtg
     5821 taaaaactaa aatacaaata atccccaaag ataaacccac aagagacata aacttacgat
     5881 ctttatacca aggcgtaggc tcttgacttt caacttcttc aaaagttgat acatcttcag
     5941 gcgcactttc tcttgtaaat ttaaaaccac tttcactatt ttcttgaggt aattcttctg
     6001 gcaatgatgc aaattcttca tcttctggag cttgcccctc ttgcccttta aatccctcta
     6061 aactctcatc aagtcttggt tgatttaagc catcttcggg tttttctagt attatatctt
     6121 cttgttcagc catctatact ctttaaaaat attttttcaa aacatcagga atatgaattt
     6181 ttccttcttt atcttgataa ttttccataa tcgctaccaa ggttcttcct actgccaaag
     6241 atgagccatt aagagtgtgg acgagttcat tttttccttg ttcgttttta tagcgaattt
     6301 tagcgcgtct tgcttgaaaa tcacgacaat ttgaaaccga gctgatctca cgatatttat
     6361 tctgtcctgg aagccacact tcaagatcta cagtttttgc tgcactaaaa cccaaatctc
     6421 cagtgcaaag catcaaatgt ctatgcgcta aacctaaaga actcagcaaa tcacttgcac
     6481 actcaagcat ttcattaaac acactatcac tttgctcagg tttagtgata cttacaagct
     6541 ctactttttc aaactggtgt tgtcttataa taccccttgt atcacgccct gcactgcctg
     6601 cttcttttct aaaacaagca ctataacaag tcatttttat aggtaaagtt tcactcgcta
     6661 aaatttctcc gctgtaaaga ttggttactg gaatttcaga agttgagatc aaatacaaat
     6721 cctcatcatc taccttatac atatcttctt taaattttgg caactgaccc gtcccaaaca
     6781 tagtagcacc atttaccaaa aaaggtacat taacaaattc aaatccacga cttctattaa
     6841 aatctatcat ataatttacc aaagcacggc ttaataaagc tccttcattt ttaagcacac
     6901 aaaaacgact ttgtgaaatt tttaccccac gcataaaatc aagccaattt aaactctcgc
     6961 ctaattcaaa atgttctttt ggagtaaaat caaagctagg tggatttaaa acttttttaa
     7021 gctccacatt ttcattttca tcttcaccca caggcacaca ttcatcaggg atatttggga
     7081 tggcatgagc gatttcctca agctcatttt ctaaagcatt tactttagcg ctttgctcat
     7141 taattttgct tttattttcg cttaattttg cttttaaact ttctttatct tcggctgtag
     7201 caagctcttt actgaattta ttttgaaaag cttgaaattc ttccaaggct attttttctt
     7261 tttttaaact tgcaaaaagt tcagcaagtt tttttaagat attttcatca acttttttat
     7321 tttttaactt tttagccact tcatcaaaat tattttgcaa attttttaaa tctagcattt
     7381 tctactcctt aaagtccgat tttttcataa attttttgca ttttttcttg ggcgattttt
     7441 cttgcttttg tcgcaccaaa atccaaaatt tctttcaaat gcgaaggctt ttctaaaagc
     7501 tcattatatt tttctcttgc ttctttaaaa taagcattta caagctcgtt taaatatatt
     7561 ttaaaatgtc cataaccctc accacctttt tcatagcgta tttgtaattc tttttgccct
     7621 gattcatcta aaaaaagctt tgcgatttta aaaatattgc agttttcatg atcttttgga
     7681 tcttctaaag cggtactatc tgtaactatg gaagaaattt gtttttttaa ggttttttca
     7741 ctgctaaaaa tatctatagt attttgataa gatttactca tttttgctcc atcagtaccc
     7801 acaaccacag ctacttcttc attaactctc gcttctggaa gggtaaaaat ttcaccccat
     7861 tcattattaa cttttaaagc aatatcgcgt gcgatttcaa catgctggat ttgatctttt
     7921 cctacaggga caattcgtgt atcaaaaagt aaaatatctg ccgccattaa aacaggataa
     7981 gaaaaaagcc catgtgaagc actaagtccc ttagcaactt tatccttgta actatgtgca
     8041 cgctctaata aacccatagg agtaaattgc gataaaatcc aataaagctc cataacttcc
     8101 ttaacatcac tttgcaacca aaaaacgctt ttttgaggat ctataccaag gcttaaaaaa
     8161 gccgcagcag cttttaagga attttgttta agtttttctc catcttgaga agaagtcatg
     8221 gcatgataat tagcaataaa cataaacatt tggctttttt cttgtgcatc taccatttgc
     8281 ttaatcgcac caaaataatt acctatatgc aaatcgccac ttggctgaag gcctgttaat
     8341 actctcattt tatcaccttt ttaatctcgc ttaaaagctc atctatattt ttattttcta
     8401 tatttaaaat aaaatttgcc ttttgttcat acttgcttaa acgctcatta tataattttt
     8461 ttgctttaat ttcatcataa aataaagg
//
LOCUS       DARBAR010000070         8452 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.070, whole genome shotgun sequence.
ACCESSION   DARBAR010000070 DARBAR010000000
VERSION     DARBAR010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8452
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.070"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            135..1796
                     /locus_tag="SB815_001214"
     CDS             135..1796
                     /locus_tag="SB815_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG0906944.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYEARASVYDLGLDLEQSKEVQNRLIVADGDAQTV
                     EFLKEHEFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSVVRK
                     DFTRQSGCYNLLNFENLEVLFEFLQSKSPKYHYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDENKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSMESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFACIECGKE
                     FATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMIN"
     gene            complement(1789..2598)
                     /locus_tag="SB815_001215"
     CDS             complement(1789..2598)
                     /locus_tag="SB815_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEG0906945.1"
                     /translation="MKKILFLFCSFFLAFAKPSLEIPKLSKQAKQNFILENVKFNYNG
                     TIYKIFIAKNKNENSNYKYKIIYLLDGNAFFPLFLNLFNTPVKENLLIIGIGYDNNLA
                     FDTQKRTKDYTPTTNLNKQGGGSKEFRNFLITQLIPYINKMYPIDFSHQILFGHSFGG
                     LFAIDTLLYDSKIFSHYFIISPSLWWDNSEFLPNIIKLQTCPKIYIGLGSLETNSSII
                     KGVAKLNAQKLSEKISKETNCKTHFKLFKNETHGSVISKAMLWMKKLLDLN"
     gene            complement(2595..3890)
                     /locus_tag="SB815_001216"
     CDS             complement(2595..3890)
                     /locus_tag="SB815_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0906946.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKKGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDTLNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFGENLGVVDIYKNSKNLVVKFDSKLTSKEELEGKL"
     gene            4057..4659
                     /gene="rdgB"
                     /locus_tag="SB815_001217"
     CDS             4057..4659
                     /gene="rdgB"
                     /locus_tag="SB815_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HEG0906947.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAYYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            complement(4690..7161)
                     /locus_tag="SB815_001218"
     CDS             complement(4690..7161)
                     /locus_tag="SB815_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HEG0906948.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKAQNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNNLIEKRDLATDEKEKDQIRLAIKEHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYVALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLILSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYEISVLAIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNASDTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSVLSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQHKEHILKQ"
     gene            complement(7161..7730)
                     /locus_tag="SB815_001219"
     CDS             complement(7161..7730)
                     /locus_tag="SB815_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HEG0906949.1"
                     /translation="MKKIFLILTLFFNAFALQLDEISSTMQKNIDASLKLLQDNKEDK
                     KQAANGIFKLFDSIIDYKLMAKLSLSKNYSKLTPKEQEKFTTAFETSLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLIYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            complement(7740..8438)
                     /locus_tag="SB815_001220"
     CDS             complement(7740..8438)
                     /locus_tag="SB815_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HEG0906950.1"
                     /translation="MRIKFISFILIFFTIFAFAKEQNLNDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNAITPEFIRLGARNFFDNLLAPLRFVSNVLQFKFEE
                     AGEEFKRFTANTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLTLPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
BASE COUNT         3058 a         1198 c         1336 g         2860 t
ORIGIN      
        1 taaactctca tcttcaataa gagtgttaat ttgtggaaaa gttctaaatt tgttcatctt
       61 aagccttaag aaaatatttg gttattttaa catagaattt ataaaatgat gttttaaaga
      121 gattaaggaa gacaatgcaa gattttgttt atataaaaaa tgatgtttta atccctttgc
      181 ctgatgctat tgaaatttta gatcaggcaa atgataaaga agcattaatt tgcaatgata
      241 aaaatcaaaa agcacaaatt tatgcccctg agattaattt ttatcttaaa aattctcaag
      301 atgaaatttt agagcaaagt aaaaatgttt taacgcttta tgaagcaaga gctagcgttt
      361 atgatttggg gcttgattta gaacaaagca aagaagtgca aaatcgtttg attgtcgcag
      421 atggtgacgc tcaaactgta gagtttttaa aagaacatga atttaaggtt attgctttaa
      481 gcagtgcaga aattttagct gtttttggaa gtgtagggga gctttgtgct gtggttaaaa
      541 atcaaggcga agaagtggaa atagattttg attttttact ttttaaagct gaggatttaa
      601 gcgttgtgcg taaagatttt acaagacaaa gtggatgtta taatctttta aattttgaaa
      661 atcttgaagt attgtttgag tttttgcaaa gcaaaagtcc aaaatatcat tataaaactt
      721 atattagcta taatgctagt gtgtgtcaat accacgaaag acgcagtgag cattgtgcaa
      781 aatgtgctga aatttgtcct actgtggcga ttttaaaaga tgatgaaaac aaacatttgg
      841 aattttctca agtggattgt ttgggttgtg gaggatgtat tagcgtgtgt cctagcggat
      901 cgcttgatta tgctcctatg ccaagagaaa gtttctttac cctttgtgag ttttataaag
      961 ataaaaaaat tttaatcatt cctaaaaaaa tgtctttaga aaatttaaat cttgctttac
     1021 caaaagatgt tttacccttt atgatagagg gtgaaaaatg gctttcttct atgcattttt
     1081 taacgctttt gcaaaatagt ggagcaaatt tggtttttta tacggatttt gtatctcgtg
     1141 gtagcaacga ggctattgta cttttaaata ctttttttga gagaaaattt caaaaaaaag
     1201 ctatttttgt tgctaaagat gaaaaagaat tgcaaaatgt tttaaaagag caagaattca
     1261 tacaagattt aaaatatgat tttcataata acaccttaac tacaagagaa aattttgcca
     1321 aaagaatgca ggaaatgata aaaaatgaag attttggcag tatggaaagt ggcgaatggt
     1381 tgcgttatgg taaggtagaa atcaatccta acacctgtac gctttgtctt tcttgtgtgg
     1441 gtgcctgtaa tgtaggagct ttaatcgctg ataaacaaga aaatgctttg aaatttaatg
     1501 cttctctttg tacgacttgt gggtattgtg agttaagttg tgctgaaaaa gatactttaa
     1561 aattatttcg tagtggaatg gagtttagag cttcttattt tgaatatcaa accatggcaa
     1621 aagatgagct ttttgcctgt atagaatgtg gtaaagaatt tgcgaccaaa aaagccgtag
     1681 aaaaaatagc caatttaatg aaacctaaat ttggtaatga tgagaataaa atcaaaacac
     1741 tttattgctg tgcagattgc aaggcaaaag tgatgataaa agcaatgatt aattaagatc
     1801 aagaagcttt ttcatccaca gcatagcttt agatatgaca cttccatgag tttcattttt
     1861 aaaaagttta aaatgagttt tacaattagt ttctttggat attttttcgc taagtttttg
     1921 agcattgagc ttagctacac ctttgataat acttgaattt gtttccaatg aacctaatcc
     1981 gatgtaaatt ttagggcaag tttgtaattt tatgatatta ggtaaaaact cactattatc
     2041 ccaccataaa gaaggtgaaa taataaaata atgactaaaa atcttactat cataaagaag
     2101 tgtatcaatg gcaaaaagtc ctccaaaaga atgtccaaag agaatttgat ggctaaaatc
     2161 aataggatac attttgttga tataagggat gagttgggtt attaagaaat ttctaaattc
     2221 tttactacct ccaccttgtt tatttaaatt tgttgtaggc gtataatctt tagtgcgttt
     2281 ttgtgtatca aaagctaaat tattatcata acctattcca ataattaaaa gattttcttt
     2341 gacaggagtg ttgaaaagat ttaaaaaaag aggaaaaaag gcatttccat cgagtaaata
     2401 aatgatttta tatttataat ttgagttttc attcttgttt ttagctataa aaattttata
     2461 tattgtgcca ttataattaa atttgacatt ttctaaaata aagttttgtt ttgcttgttt
     2521 tgagagcttg ggtatctcta gacttggttt tgcaaaagct agaaaaaaag aacagaataa
     2581 aaataatatt tttttcataa tttgccttct aattcttctt tacttgtaag tttgctatca
     2641 aatttaacaa caagattttt agagttttta taaatatcta caacccctaa attttcacca
     2701 aaagtactga aatttaaagg cgtttctaaa ggtagataaa ggtttttaaa atcagctgga
     2761 ttttttaaga aaaataatgc cacaagccaa attagagcta aaattactaa aataatagct
     2821 aaaagattta aggtatctag atgtaaaaat atccctccga taataccacc tataaaactt
     2881 ccaccatatc caaaagcatt aaataaccct aatgctgcac ctttttcatg aactttacaa
     2941 aattttgatg cacaactttg cataataggt tcgtgtaaat taaaacctat aaaaaaaatc
     3001 acaactgcta tgataaaaaa atcaatagaa ttactaaaag caaaaaaaag ataagaaagt
     3061 atgaaaaaaa caattcctaa gagtaaaatt tgtttagcta aacctttttt ttcgcctaaa
     3121 cttccagcaa agcccatagc gataaaacct gctaccatag aagcgctata aacaatccaa
     3181 agtttatcag aagcaaagcc taaatgtttt actagaataa taggaatact taaaaatgct
     3241 atactcataa gcattttttg catgaaatta gtaagattca taagggctaa atttttttgt
     3301 ttaataagat gaaaaaaagg agttttttca ttttcatgag tgattttatt ttctttaggt
     3361 acaacggtat aaagtaaaat tatacataaa agagacaaag ccgcactaag atcaaaaagg
     3421 ctagataaac cccattttgc actcattaaa ggagaaatta ccatagaagc tgcaaaacta
     3481 agtcctataa aagaacccat taccgccatg gctttaccac gattttcttc tgtgataaaa
     3541 tcacttatca ttgccgtagc tactgctcca atagctcctg caccttggag cattctccct
     3601 aaaagcatgg tgtaaatatt ttctgcaaaa gagcagatta aagagcctat tataaaaata
     3661 atcagtccaa tgagcatggt ttttttacga ccaattttat cacttaaaat cccaaaaggc
     3721 atttgtaaaa tcatttgggt taaggcgtaa acaccaacta aaagtcccac taaaaattca
     3781 ttagcacctt caagttttaa agcataaagg cttaaaactg gcaaaactat aaaaagccca
     3841 aaaaatcttg ttccaactat gaaagataag ggtaagacat tatttagcat tatcaatttc
     3901 ctattaaatt tgaaatttaa attaggataa ttttactatg aaatggatta agcattgatt
     3961 aacatcgttt taccattttg tatttaaaag ctacgcacaa ggataaattt tataaaatca
     4021 tatttttgtt tttgatatta ttttggagct tttgttatga agattatcct agctacgagc
     4081 aataaacata aagttttaga acttaaagaa attttaaaag attttgaaat ttatgctttt
     4141 gatgaagttt taatgccttt tgagattgaa gaaaatggaa aaacttttaa agaaaacgcc
     4201 ttgattaaag caagagcggt ttttaatgct ttggatgaaa agcaaaaaaa agattttatc
     4261 gctttaagtg atgatagtgg catttgtgta gatgttttag aaggaaatcc aggaatttat
     4321 tctgctcgat ttagcggtaa gggcgatgat aaaagtaacc gtgataaact tgtcaatgaa
     4381 atgataaaaa aaggttttaa acaaagtaag gcatattatg ttgctgctat tgctatggta
     4441 ggtttgatgg gggaatttag tacgcatgga accatgcatg gaaaagtaat agatacagaa
     4501 aaaggtgaaa atggttttgg ttatgatagc ctttttattc caaagggttt tgataaaacc
     4561 ttagcccagc ttagcgtgga tgagaagaat aatatctctc atcgttttaa agctttagag
     4621 cttgcaaaaa tcattttaaa gattttaaat aaaggataaa aatgaaaaat tttttaaaat
     4681 atatagctat tattgtttta atatatgctc tttatgttgg tttggaaact tggttttctt
     4741 agaataaata gtgattaaaa agcttggtaa taagaacaaa cttccactta aaagcaaaat
     4801 cattacaaaa acggttaaaa ttccaaaata aattgttgga atgaaattac tactcatcat
     4861 aacactaaaa cctaaaacta tgctaatggt agtataataa agtgccgaac ctatactaag
     4921 gtgagaaatc ataatggctt cttctaggct tttgttttta atttcttctc taaaacgata
     4981 aatataatgt atagcatcat caacgcctat gcctatagca atagcagcta tagtaatact
     5041 catcatatcc aaaggaatac ctaaaagccc cataagagca aaaaccacac ttaaaggaat
     5101 aacatttacc aatatagccg caactgaaaa ttttaaatct ctaaaaacaa tgataaaaag
     5161 tataaaaata gctaaaatta caaatataag agtatcaaat tgcgatgaaa aaagactttg
     5221 gagcatatta ttataaagca ccattatgcc tgtgatttga acttctactc catcattttt
     5281 tacaagctcg ttgagctgtt ttttaagatc tattaaaaac tcattacgtc ttaaattcgg
     5341 atcagaatca acaatacgca tgctaaatct taactcgtta ttttctatac ttacaaaagg
     5401 tgaaagcaag tcttgtttaa atttggcagg caaattttca tttaaaaacg caagggcaaa
     5461 atcatccaac tcttttccat cgttaatatt tttccctagg gttaaaagac tattaagact
     5521 taaaaccgaa cctacaaatt ctttgttttc taaaaattca tgaacttttt ttgcaatgcg
     5581 tgttttttta gagtcaaacc aataagtttc ttgtgtggct aaattttcaa attcactttc
     5641 aaaactatca agagtatcgc ttgcattttg atcgttttta ttatttggaa aacgaatgat
     5701 cacttctaaa ggtaaggttc cacctagatt tttatcaata accaaaagtc cttttttgat
     5761 ttcactacca tctttgaaat aattgacaaa agaattttca actctgagtt ttgaaatgcc
     5821 tattaaagct aagattatag caagaactga aatttcataa atcatgcgac gctttttagg
     5881 atcaagagcg gttttggcgc aaaaggctaa aagattaaat ttaaactctt ttttatgata
     5941 attttttggt tttaaaagaa ctaagatact tgctaaaaac aaataactaa agataagagc
     6001 taaacctata cctatactca tcataatgcc aagttttatg ataggttcga tatttgatag
     6061 gattaaagaa aaaaatccta tcatcgttgt aacaatggca taaaggctag gatttgcttt
     6121 cgctagtaag gtttcaagca ctatgcgctc aactttagct ttgggatgat tttgggtgct
     6181 ttcgataaaa tgcgtgatca aatgaacaac tacacttaag gtgataatta aaaccaaagc
     6241 aacgtaattt gatgaaataa ccgtgatttg aaaatttaaa agcgcaaaaa ctccactagc
     6301 cgcacttaag cttataaaac aaataaaaag aggtaaaaaa acaaagcgcc atgagcggaa
     6361 aaaataataa agtgcaagtc ctagtaaaaa tacaagagaa acaccataaa gcacaagatc
     6421 agattttata taagctatca tatcatcagc gatcatgctt acgccaccaa ggtagagcgt
     6481 atctttattt ttttcataat ttcgaactat gcttttaata gtatctagac tttgtttcgt
     6541 gataactttt tgcttgtctt gatgttcttt tatggcaaga cgaatttgat ctttttcttt
     6601 ttcatcggta gcaagatcgc gtttttctat aagattatta taaactgtat caggctttaa
     6661 gtaaataata agccctgtta cttttccatc ttttgagatg atattatttt tataaaaggg
     6721 actatttaaa atttcatttt gggcttttgt gcggtttata tcttggcttt ctatatttgg
     6781 gatatttttt aaaagttctt ttaaatccgt attttgcgaa ctttgaagca aaggggcatt
     6841 gatgatacta aaaacgcgtt ctactaaagg ggctttttct aattcttcat gaagtttttt
     6901 taatttggct aaattttcat ttgaaaaagg tttttcatca tagggtttga aggctaaaag
     6961 taaaaaatta tcacttttat aatgttttga aatttctcta aaagttttta aatctgcatc
     7021 atcttctaaa agtaaacttt cagcacttgc atctacgcta agcttaaaag caaaaaagct
     7081 taaaaacagg catataaaca acgttccaaa aaaagtactt tttggacgag aaataaaaaa
     7141 ctttaaaagc tttgcaaaca ttattctatg acaatacttt caagtttttg aagtagggca
     7201 tcaaagcctt ggttggctaa aatatctcca aattgtgatc tataagtttg tactatactc
     7261 acacctaaaa catctacatc ataaataagc cagttgttat tatcattgta aaatttgaaa
     7321 atgatatttt tttcttcccc atctactacc atagaagtgg ttaaaaaata gcgtttttca
     7381 ttttttaact caccattttt gacctttaaa acctgatctt tataaagact gagtttatcg
     7441 gtaaaacttt ttttaagact tgtttcaaag gctgtggtaa atttttcttg ttcttttggg
     7501 gttaatttag aataattttt cgaaagactg agtttcgcca tgagtttata atctattatg
     7561 ctatcaaaaa gtttaaaaat tccattagca gcttgttttt tgtcttcttt gttatcttgt
     7621 aaaagtttta agcttgcatc aatgtttttt tgcatagtgc tagaaatttc atctagttgt
     7681 aaggcaaaag cattaaaaaa taaagtcaag attaaaaata tttttttcat taatttcctt
     7741 tatttgctaa gttcattgcg tctttgctcg taagcatcac gcaagaatgg atataaatta
     7801 ggcgtgttgt gataaatttc atcaatttca tcaagcctaa aactaagttc attaccaaat
     7861 ccataagcac ttatagctat acttgcccaa gtaggatcaa tgtaagcggt aaaacttgca
     7921 taccaagttg caggtaaagt aagagtgtct ctaagattgc taggaccaag tataggtaag
     7981 acaatatgaa aaccgcttcc tacaccccag tgagccaaaa cggttcctaa gtccgcggga
     8041 tgttttttaa gacccatttt tgatgccaca tccataagtc caccaaaacc catgatggta
     8101 ttggcggtaa atcttttaaa ttcttctcca gcttcttcaa atttaaactg caaaacattg
     8161 cttacaaaac gcaaaggagc aagtaaatta tcaaagaaat ttcttgcccc taatcttata
     8221 aattcaggag tgatagcgtt atagccctta agaacgggac gcaaaccata atcatacaaa
     8281 gccacattaa agcttgtcat agctttgtta tatcctgaaa gtggatcgtt tacttgatag
     8341 ttttggtatt cttgttcaaa atcatttaaa ttttgttctt tagcaaaagc aaaaatagta
     8401 aaaaaaatta aaataaaaga tataaatttt attctcaagc aaaaactcct aa
//
LOCUS       DARBAR010000071         8293 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.071, whole genome shotgun sequence.
ACCESSION   DARBAR010000071 DARBAR010000000
VERSION     DARBAR010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8293
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.071"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            153..668
                     /gene="nrfH"
                     /locus_tag="SB815_001221"
     CDS             153..668
                     /gene="nrfH"
                     /locus_tag="SB815_001221"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HEG0906951.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            683..2515
                     /locus_tag="SB815_001222"
     CDS             683..2515
                     /locus_tag="SB815_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HEG0906952.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKVKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            2651..3205
                     /locus_tag="SB815_001223"
     CDS             2651..3205
                     /locus_tag="SB815_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906953.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            3269..3358
                     /locus_tag="SB815_001224"
     tRNA            3269..3358
                     /locus_tag="SB815_001224"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3303..3305,aa:Ser,seq:gct)
     gene            complement(3431..4424)
                     /gene="ceuB"
                     /locus_tag="SB815_001225"
                     /pseudo
     CDS             complement(3431..4424)
                     /gene="ceuB"
                     /locus_tag="SB815_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
     gene            complement(4437..5192)
                     /locus_tag="SB815_001226"
     CDS             complement(4437..5192)
                     /locus_tag="SB815_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0906954.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNTNDKIKINEALEYMGLSNLRNEFLDTLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            complement(5189..6127)
                     /locus_tag="SB815_001227"
     CDS             complement(5189..6127)
                     /locus_tag="SB815_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HEG0906955.1"
                     /translation="MRKKMLILSFLTLNMIGIFIFVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            complement(6120..7088)
                     /locus_tag="SB815_001228"
     CDS             complement(6120..7088)
                     /locus_tag="SB815_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0906956.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVSIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKVYA"
     gene            complement(7174..8163)
                     /locus_tag="SB815_001229"
     CDS             complement(7174..8163)
                     /locus_tag="SB815_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HEG0906957.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSQATQTQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGVNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDLPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPENKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            complement(8160..>8293)
                     /locus_tag="SB815_001230"
     CDS             complement(8160..>8293)
                     /locus_tag="SB815_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEG0906958.1"
                     /translation="KNEQKIGLLFSEIKTKFVEFEDEDAFLNLNFYEEYEKFKSELK"
BASE COUNT         2966 a         1204 c         1307 g         2816 t
ORIGIN      
        1 tttgaaatta ttgaataaaa gttttaaatt tttttaggtt aattaagagt aaatatatct
       61 ttaaaattat attaaattca tctatgttag aatcacaaaa tttatttctg ggaaattctg
      121 tgacattgtt gtttcattga agattttaag aaatgataat tttaaggagg aaaattttga
      181 agaaaacttc gaatcttttt actatttttc ttgttttgct ttttgttttc tttgcggttg
      241 ggttttatac tttttataac gctaagggca catcttattt aagcaatgca agtgaatctt
      301 gtaataactg ccatattatg aatgaagttt ataacgaata catggcagga ccacactctc
      361 aaaaagtcaa aggcgaacca agagcaactt gtgtggattg tcatttgcca cataattttg
      421 tagctaagtg gatagctaaa gcgcaaagtg gtttaggaca tgcttatgct tttactttta
      481 aacttgatga gttgcctaca aatttgagtg cgactgaaaa aagcagaaaa atggtgcaag
      541 aaaactgcat acgctgtcat gcagattttg ctcaaacagc tatcaatgct acaacaaatc
      601 cacatgcaga caagtcatta aattgtgctt cttgtcataa agatgttgga cataaacacg
      661 gaatttaata aggagaagat gaatgaaaaa aaatatttta cgcttaggta ttgtcgtttt
      721 ggttttactt atagcgggag ttttatggct aaataatgat atcaatcaaa aaaaagaaga
      781 tgaagcaaat aaaaatgcca ttgcagcaaa tgctgatttt tctttgctta gcgatgatga
      841 tccaaatttt gaaaaatggg gtaaggtttt tccagagcaa ctaaaaatgt atttaacggt
      901 tgaaaaagaa gagcctaagg ctactgaatt tggtggtaat ttagcttatt caaaattaat
      961 tcgctttcct caattaacca tactttgggc aggatatcct tttagtcttg atttcaatga
     1021 agaaagaggg catttttggg ttcaagtaga tcaaatgaaa acagcaagaa acaacaaaga
     1081 ttttcttaat gctcacggcc ttgctgcttt taaaggtcaa cctgcagctt gtatgaattg
     1141 tcatagtgga tggactccat ggcttataaa aaatgttgct aaaggagatt ttactgcttt
     1201 taactctaca aattattgga ctatgattaa aaatatccca gctgttgatg gtatagtaga
     1261 aaattcacct gaacatgcag gcccacatgg tggtaaaaga atgggtgtaa cttgtgcaga
     1321 ttgtcacaat ccaaatgata tgagtttaag acttactcgt ccagcagcta ttaatgcttt
     1381 agtttctaga ggatatgaaa aagatccagt acaaggcgta aaagctacaa gagaagaaat
     1441 gagaacttta gtttgctctc aatgtcatgt tgaatactat tttaaaccaa caggggaaaa
     1501 agtaaaagta atgggtgaaa ctattgtaga tgatagttct aaaaaatggt ggaatggaac
     1561 tcagaaaaat tatgatgagt atgagttttg gagagatggc aataaagtta aagagattga
     1621 aaccgatggt atagttttaa cttttccttg gagtgagtgg aaaaaaggac aaccatttag
     1681 aattgaaatg ctagatgatt attatgataa agttcgtgga gtatttggag ctgattttac
     1741 tcataaatta acaggagcgc aaattattaa aattcaacat ccagaaagtg aactttatag
     1801 tggcggtgtg catgctgcaa atggagtaag ttgcgtggat tgtcatatgc cttatgttag
     1861 agaaggagct aaaaaggtta ctcaacacaa tatcacttct cctttaagag atattaactc
     1921 tgcttgtaag tcttgtcata aacaaagtga agattattta aaagctcaag tgcttgacat
     1981 acaaaacagc gttgcacatg atcaaagaac tgcagagtat gcaattgtta gtttgattat
     2041 ggatactaaa aaattacgcg atgaactagg caatatggaa aaattccaaa gcgatggaaa
     2101 agctgatgcg aaaaaaatta gcgaagagct aaaagaagtt ttagaacttc atcgtaaagc
     2161 tcaaatgaga gcggattttg ttaatgctga aaactcaact ggtttccata atcctcgcga
     2221 agcttcaaga atgttattgc aagctgttga tatggcaaga atgggacaaa ctaaacttgt
     2281 agaaattgca gcggcaaatg gaattaaaga ttttaaaact tcaaatttag gttttgaaga
     2341 tattcaaaaa tttaatccag gagagcttta ttataaagta gatgttaata atcataaagc
     2401 tggagagcgt tactatgcag atgaaaaaga tgttaatggc aatcctccaa aagaactttt
     2461 agagcatgat aaagagcttg ctccttataa ttatcaagtg attgataaaa aataattctt
     2521 aagccctata atcatagggc tttttctttt ctttgtttta aaaaatataa actttttatt
     2581 taaaattcac ttttgcttca ctttgttttg tcaaaatatc acaaattttg ataatcaaaa
     2641 aggagttaaa atgatcaata aaaataaatt gtttagacag gttcatatct atcttagttt
     2701 gttctttttg ccttgtgctt tgctttttgc tttaacgggt atagcgtata tttttggtat
     2761 taatcaagat gtgggcttaa aagttgagca gtatcaattg tcaaaagtta tagaaagtgg
     2821 taaagaaaga gaagctttaa tagagtattt aaaaacaaat ggtttaaaag taccatctaa
     2881 tacaaatata attaaaagta aagataaagg tataacaata ggtggaactc attatagtgc
     2941 taatataact caaaattcta ctaatgaata caatattacc ttaaaaacaa gatctttact
     3001 tggagatatg attatgcttc ataaagataa gggtgcttgg tatttttctg tgcttagcgt
     3061 aggttttggt attactttat ttatgcttta tatttcaggg cttatgatta ctttgtttgc
     3121 aaataaaaaa gatagaagta aacaatttgc agttcttgga gtaggggttg ttgtaacttt
     3181 gcttttggct tatcttagcc tttgattttt cctagctttt taagctaggt attatttatt
     3241 tttttgtata atcatacttt actttattgg acagatgggt gagtggctga aaccacaccc
     3301 ctgctaaggg tgcagatctt aacgggtctc gagggttcaa atccctctct gtccgccact
     3361 aaaactttct tgaaaatccc aagtatttta ttaagtatcg aagcaagaga ctagcccttg
     3421 cgaagttata ttattttaca gcgtttttga tttctaaaat catagttttt aaagactcta
     3481 gtccatttcc acttgctaaa taccagtatt ctggatcaag atagatgatt ttttttgttt
     3541 tgcgctgctt tggttttagc gacaagtgca ttatcgagta tgccttgagc acgttctttg
     3601 ttgcctaaga tgacatttct atcaacaaca aaaatataat caggattttt ttctaatata
     3661 aattcagaat tgatactttt tccgtgtgtg cctactttta tattctcatc taccgcgtta
     3721 atccctaaaa catcgtgaat aatcccaaag cgagattgag gaccaaaggc tgaaattttg
     3781 ttagaatttg taagaatgat aagagctttt ttatcttcat caactatact tttggctttt
     3841 tcaatttcat ttttaatatc tgaaattttt tctaaagctt ctttttctaa accataaagt
     3901 tttgcaacgc ttaagacatt gttttcaaaa gagcttaaaa aatttgcatt atcaagacct
     3961 acaaataaag ttggagctat ttcttttaat ttgtcataaa atttactttg gcgtccagaa
     4021 atgatgataa gatcaggttt taaagcatta atggcttcaa aatcaacttg ttgtactcca
     4081 cctacactag gtttgttttt aaattgttgt aggtattttg gtaaattttt agcaggaacg
     4141 ccaacgactt tatcatttaa ttttaaagca tcaaaagtat ctaaaattcc aagatctaag
     4201 atcactacct tagaaggatt tttagggatt ttattttctc ctagactatc cttcactaaa
     4261 aaactatcac cctcatcgct catactaata ggcaaaactt tcaccgtagc agtgttggtt
     4321 tttgttgtag aacttgcgtt gttttcattt gagtttgaat tacaagctgt taagattaga
     4381 cttaaaaaaa atgcaaaaaa tgcaaaaact aaagattttt tcatattttc tcctttttaa
     4441 aaataaatac aaattttctt accattaatt tgacttacgg gtatatccat atcataaatt
     4501 tgttttaaat tttcttgatt gatgatttca tcttttgagc cttgttttaa aagctttcca
     4561 tcttttaagg ctatgatttc atcagaataa atcgaagcaa aattaatatc atgtaataca
     4621 acagctatac ttttgttaaa gtctttgact aaatttttca ttagttgcat gatttgtacg
     4681 ctatgcttca tatcaagatt gttcaaaggt tcatcaaaca ttataaattc agtatcctga
     4741 gcgatgatca tggctataaa agctctttgc ttttgtcccc cgcttaatgt atctaaaaat
     4801 tcatttctta agttactaag ccccatgtat tctaaagctt cattgatttt gattttatcg
     4861 tttgtattaa gtcttccttg agaatgcgga aaacgcccaa aagcgactaa ttcttcaact
     4921 tttaatctta aattgatatt gttttgttgt ttgagaatgg aaattttttg tgctaagatt
     4981 tgctctttat aattttttaa attcattcca tcgatataaa tttctccact actaggtttt
     5041 atcaaacgac ttgctagagc taaaagagtg gattttccag cgccattggc tcctattata
     5101 gaagtgattt tgcctttatg aaaatcaagg ctaagatctg aaataatgac tttattatca
     5161 taaaatttgg tgatattttt tagtttaatc ataatttatt accctttaat acaagataga
     5221 taaaatatat cccacctaag aaattaataa ccacgcttat agtggcatta taatcaaaaa
     5281 ctctagagac aaaaaacacc cctccaagca aagccaaaat actaataagt atacaagcgc
     5341 ttagcaaaat actatgcttt gcagttttaa atagctcata agtgatattt actactaaaa
     5401 gtcctaaaaa ggttatagga cctacaagtg cggtgctaat agaagttaaa atagctatga
     5461 taatcatcaa ttgttttgaa attttttgat aatttatccc taaatttatc gctaaatctt
     5521 tgcctaaatt taaaggatct aaaaatttca tatagcgaaa aatccatata aaacttaaaa
     5581 agctaataat ataagcaaga attaaaacat caaaagcaat attatcaaaa ctagcaaaca
     5641 ttcttccttg tattaccatg aattcatcag ggtcgattag tacttcaaaa aaagagctta
     5701 aagtgctaaa aagtgttcca aaaactaaac ctaaaagcat gataagataa atacttctat
     5761 cactactaaa taaaatctta taaagtccta gtgaaaaaac caccatacaa actagagtga
     5821 ttaaaaaatt gatatcgttt ttataaacac ttaaattagc cgcaccaaaa gaaaagataa
     5881 gagcactttg aagcaacata tataaagaat ctaatcctat gatagcaggg gttagaattt
     5941 tgttattgca taaagtttga aaaatcactg ttgaaacagc gatacaaata gctactataa
     6001 taatagccgc aatttgtaaa aaacgacttt ttaaggcata ctcatcaaag ccatttaaac
     6061 ccacaaatat aaaaatccct atcatgttaa gtgttaaaaa gcttaaaatt agcatttttt
     6121 tacgcataaa ctttcctttt tagtaaaaga aagataaaga ttaaagaccc taaaacacct
     6181 gtagtgatac ttaaaggcat ttcaaaagga aagataacaa gtcttgaaat gatatcgcaa
     6241 acaagtaaaa acaaagctcc acaaagtgct atatagataa gattttttct aagattatca
     6301 cctagataaa gagctactaa atttgggata attagcccta aaaaagggat aatcccaacg
     6361 cttacaatca ctaagctagt gataatgctt acaatcatta agcctaaaaa taatatacca
     6421 ttataagaaa ttccaagatt taaagctata tcttcaccca tgccaactat ggtgatttta
     6481 tgagctaaaa aataagcaag tataaaaagt ggtaaagaaa tgtagagcaa ttcataattt
     6541 ccctgcataa catttgccat actgccttgt agccaacctt ggatattttg tatataattt
     6601 aaagcatagg caaaaaaagt ggttatagca ctaataatac ctccaaacat caagcctatc
     6661 aaaggtacaa aaatcacatc tttgagtttg atttttctta aaatttggat aaatataaaa
     6721 gaacccaaaa gtgcaaatat agaagcaatg atagcttgag tgaaaaaaga cgctccagta
     6781 aaaaatatta aagaaataag tatgccaaat ttagcacaat ccatggtccc tgctgtagtt
     6841 ggggaaacga atttattttg cgtgagttgt tgcatgataa gcccacatat actaagactc
     6901 attcctgtga gtaaaatcgc tataagtcta ggaattcttg tgagagttat gatttctagt
     6961 tgagtggagt taagattaag aatatctttt acattgatac tgataactcc tataaataaa
     7021 cttatcattc caaagaataa aagtaaagct ataagcactt ttaaactcaa tatatgctta
     7081 aaaaacaaat ctttccttat agtaataata attatcaaaa atgaaattgt aatgaaattt
     7141 gttttaagaa atgataaaac tataaaggat attttagtaa gaaatcaaaa atccagtgga
     7201 aagtctttgc aagtgtttgt tatagtctat aaggctttct ccatagccat taaagtattg
     7261 taaataccaa taaattccgt tattaaaaat atcatatcct agatcaactt gtatagcgcc
     7321 tttgttattg tggaatttaa gattatttct tagcataaga ttgataaaat aatcatcacc
     7381 taaatacgct aaattcacat caaaatttcc catataatgc aagatggcag gattatcatc
     7441 atcttttttg ttttcaggaa ttctatacca aaggcgtgga acaaataaaa atttattata
     7501 taaaatagca gtagatacat aaattctatt ccatgagcga gattgtaaat tctcatctcc
     7561 cttgccattg ctttcatgca atatacctac gcgtagattg ttaaaaaatt cataatcttt
     7621 aagatataaa ggaagatcta taaaaaattc tggttgatag ttggtttctc taaaaggaga
     7681 agaatgctca taaatttgcc accaagaagt ttgagtatag gctatataat atttttcatc
     7741 tagtcctagt aaattttcaa aaagtctttt tttaacacta agttggaatt tcgcctcact
     7801 cttattatta tttactccta aagaattaaa actataagca aaaggtaaaa aataattcat
     7861 cttataagag ctaatgccaa ggggattaaa gctttcattt tcaccaagat aattagccaa
     7921 agctaagcga gaaaagtctt gtttttcttc tttttttata gtgatagaat tttgcgtttg
     7981 tgttgcttga cttgagttat tttgttcttg agaaatcaaa acagatgaat tttttaaagc
     8041 gagttttttg taaatttcca tagctttttt ataatcgcct tgtttttcat actctaaagc
     8101 ttgttgtaaa tcactagccc atataaaaac gcataagctt aaaaataaag caatttttct
     8161 cattttaact cgcttttaaa tttttcatat tcttcataaa aattaagatt taaaaaagca
     8221 tcttcatctt caaattctac aaatttggtt ttaatctcag aaaataaaag tcctattttt
     8281 tgttcatttt ttt
//
LOCUS       DARBAR010000072         8183 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.072, whole genome shotgun sequence.
ACCESSION   DARBAR010000072 DARBAR010000000
VERSION     DARBAR010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8183
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.072"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            56..727
                     /locus_tag="SB815_001231"
     CDS             56..727
                     /locus_tag="SB815_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG0906959.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            724..1959
                     /locus_tag="SB815_001232"
     CDS             724..1959
                     /locus_tag="SB815_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG0906960.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     STILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            1959..2531
                     /gene="recR"
                     /locus_tag="SB815_001233"
     CDS             1959..2531
                     /gene="recR"
                     /locus_tag="SB815_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEG0906961.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(2528..3064)
                     /locus_tag="SB815_001234"
     CDS             complement(2528..3064)
                     /locus_tag="SB815_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HEG0906962.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHPEFTLDFIDG
                     GTLALQLSCIIARYDRLIVLDCIEAQDASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFTYE
                     KIADFSLQELADISYKNY"
     gene            complement(3061..3753)
                     /gene="cybH"
                     /locus_tag="SB815_001235"
     CDS             complement(3061..3753)
                     /gene="cybH"
                     /locus_tag="SB815_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HEG0906963.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKYAKEEKH"
     gene            complement(3764..5479)
                     /locus_tag="SB815_001236"
     CDS             complement(3764..5479)
                     /locus_tag="SB815_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEG0906964.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTSNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANVV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(5482..6621)
                     /locus_tag="SB815_001237"
     CDS             complement(5482..6621)
                     /locus_tag="SB815_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG0906965.1"
                     /translation="MIDYHQIESRLSALEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLESAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(6742..>8183)
                     /gene="mnmC"
                     /locus_tag="SB815_001238"
     CDS             complement(6742..>8183)
                     /gene="mnmC"
                     /locus_tag="SB815_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEG0906966.1"
                     /translation="FLDLVFEDIAVLKELDFKADVWYLDGFSPNKNSQMFDENLIFEV
                     ARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKREMIKAYLENELEFKDKEAY
                     FSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDIFEKHLELGKGASGNESGILS
                     SLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFAHNDLMQERFDTQRENVLF
                     KISKNQAFLEEGGVIFPKKLVKNLFEKSKACIYFNHEFQAYKFENGCFSLKFKNDVVK
                     SDYAVLIYAMGADAKDFVFYDEMKLSKVRGQVTHLKPFLDTPFPLSSKAYICPVKDDL
                     QVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEIIGSKVGFRSYSSDRFMIV
                     GNAYDEAFYKEEYKALLWTKNKEQKPAKMSCNLYFNFAHGSRGFSTSVLAARYLCALI
                     NNEPLCLEKKYIHAIHPARFLIRKLKKGL"
BASE COUNT         2819 a         1512 c         1153 g         2699 t
ORIGIN      
        1 aataaaatta tgtaaagatt ttaaagacta cataaaaatt tacaaggaca ctagaatgat
       61 taatgtgttg atgatagaag atgatcctga ctttgcacaa ttattatctg aatatttagc
      121 gcaatttaat attaaaatca caaattttga aaatcctaaa agtgctttaa atgtgggtat
      181 tcaaggctat gattgtctga ttttagattt aactttacct ggaattgatg gtcttgaagt
      241 ttgtagagaa atccgacaaa aaagcaatat tcctattatc atctcatcgg ctagaggtga
      301 cttaagcgat aaagttgtgg ggcttcaaat cggtgctgat gattatctac caaagcctta
      361 cgatccaaaa gaaatgtatg caaggattat gagtcttatt cgtcgcacaa aaagagttga
      421 acacactaat aatgaaaata ttaactctgc tttcaaaatt gatgaaagaa gacatgagat
      481 cacctatgaa gataaggttt taacacttac tcctgctgaa tttgaaattt tagaatacct
      541 tatccaacaa cacggatata gtgtttcaag agaacagctt gtaagtcgct gtaaaaatct
      601 aaaagataaa gattctaaaa gccttgatgt tatcatcggt cgcttaaggg taaaaatagg
      661 agatagttca aaatctccaa aacatatttt ttctgttaga ggtataggat ataaactgat
      721 aggatgacaa aaaattattc tattcatacc aaactgatta ttttatttgt tgttactttt
      781 ttcttggttt gtgtgctttt tatcgttctt ttaaaaatag aagggaatac ctataatgaa
      841 gaagaaagtt taaaacaaga aaatcttata aaaaatttac tcatctccta tgaaaacact
      901 tcaggtgttg aaataggagc ttatcttgga aacagcggtt ttaacgctat acaaaatccc
      961 aatcttgtaa aagctataag aaataatgga caatcacttt ttaaagcagg cggagagctt
     1021 tgtactcttt cttctttaaa atatcatagc aatctttatt ttgatgttca atgtaaagat
     1081 tttgatggct tgtatgaaga aaatactagt gatagggttt ataatctttt attgatagga
     1141 tttttctctt tttctttgtt ggttgttttt atgtattttt ctgtattaaa atccttagaa
     1201 cctttaaaaa aattaagaag acaagttgcc gaagttgcaa atggggaaca acctgatttt
     1261 ctagactatc aagaagatga agtaggcaag atcgcctttg aatttcaaaa agctttcaag
     1321 aaaaaccaag aattaattca atcaagacaa cttttcctaa gaacaatcat gcatgagtta
     1381 aaaaccccta taggaaaagg gagaatcatt tctgaaatga tcaaagaaga cagacaaaaa
     1441 gaaagactta tcgctatatt tttacgcatg gattctttga tcaatgaatt tgccaaaatc
     1501 gaaaatttat tttcaaaaaa ctacaactta cactttaaac ctagtcgttt tagcactata
     1561 cttgaagaag ctaaagaaca ccttatgata gatgatttta ataaagttgt aaaagtcgat
     1621 ataagatatg acgctttaat caatgttgat atggaaattt tctctgtaat tttaaaaaat
     1681 cttatcgata atgccttaaa atactcaaac aatggcactt gtgagctttt ttgttgtaaa
     1741 gaatgtttta ccattaaaaa tccaggcaaa cctttagcag agcctataga gcattatctt
     1801 gaagctttta caagagaaaa acacaatcaa gtcaaaggta tgggactagg actttatata
     1861 gtttcagagg tatgtaaact gcataatttt gatttgattt atttttatga tgatggaaag
     1921 cattgcttta aaattttctt tggagataaa gaaaaataat ggtaaaaggc ctggaaaaat
     1981 tcaatgaact tgttgaaagt tttgcaaatt tacctaccat aggaaaaaaa actgctataa
     2041 gacttgctta tcacctttgc ataaataatc aaatcgatgg tatgaaactc gcacacaata
     2101 tagaaaatgc tatccgcttt ataaaacctt gtgagcaatg cggtgcttta agcgaaaatg
     2161 agctttgcga aatttgtagc gatgaagaaa gaaataaaaa cattttatgt atagttgaaa
     2221 gcccaaaaga tatactaacg ctcgaagaga gtcaaagtta caatgggcta tattttgttt
     2281 tagatgagtt aaatgaagaa aaacttgaaa aactaaagca aatcatactt aagctaaata
     2341 tctctgagct catttttgca ttgacacata gcattaattc tgatgcaact atctttttta
     2401 tagaagataa atttaaaggc ttaaacctaa cttttagtaa aatcgctcaa ggaattccaa
     2461 gtggtgtgaa tttagaaaat gtggatttaa tctctttaaa taaagctatg aattttagaa
     2521 caaaaattta gtaattttta taagaaatat cagctaattc ttgcaaagaa aaatccgcaa
     2581 tcttttcata agtaaaacct tccttgctta aaaaatcaag taaagttttt tccatgattt
     2641 tagcaccttg tataagctca tctgagagct taaaactcat tgcttcaata cgctttggca
     2701 cacaagctaa aatgtgagtt ttaggcaaat ctcctgcaag ttccatgtat tgtaaggttt
     2761 gaagcatttc tatttcatgg gcgcttccac tccagctgat tttattaggc atagcatcat
     2821 aaggaaagaa aaatacatct cctatacttg catcttgcgc ttctatgcag tctaaaacta
     2881 taagtctatc gtacctagcg atgatgcagc taagttgcaa agccaaagtt ccaccatcaa
     2941 taaaatctaa agtaaattca ggatgagtga atttgtagtt tttttcaagt tgcttgcaaa
     3001 gatgaacgcc taagccttca tctgcaaaca tgatattgcc tattccaagg actaagaatt
     3061 tcaatgcttt tcttcttttg catatttata tccgctaata atagcatcca tagcaccatc
     3121 tttacctttt actgcattaa aaatcgccat gtaaatatgt actggcacaa aaatcataat
     3181 cacccacatc aaaattctat gataagttct tacatcagcc aagccaccca ttgcagcttc
     3241 aagcggtctt aaaatatgat ataaaagccc acctaagccc tcatggtaag tatgagtata
     3301 aagaataagc cctgtaagaa tgatacctaa tatcacaaga taaaagaaaa aataagttac
     3361 aaattgcaaa ggattataaa ccccttttaa atgcggatgt tttcctaaga aaatgtaaaa
     3421 ttttacttgt tctatccata atttgatatt aaaaatatcc catacacttc tgcgttcttt
     3481 tgcgcttacc ttatcgcaga aaaacaaata tactttaaaa ataatacaag cgattaaaac
     3541 aaaacccacc gcttgatgta ctaagcggta ttttgcttgc ataaaattta cgggttcacc
     3601 gttactaata gggctttgga acacatagga aagataatac cctgtgccaa taagaatcac
     3661 tatagcaata gctcttaccc agtgcgttaa acgcaaacct atgctaaatt catattcagc
     3721 ttttctttgc aatttttctt ctttgttttg catgaaagcc tccttataaa ttgacattca
     3781 ctttatattc acttagatta ttgcccttag tatccattac atgcaccgca caagcaatac
     3841 aaggatcata agagtgaatt tttctaatga tttcaagtgg ttgttttaca tcagcgattt
     3901 taagtcctat caaacattgc tcataacttc cacctacgcc atttgcgtct tttggacttg
     3961 cattccaagt agaaggcacc acagcttgcc aattttcaat aacaccattt ttaattctac
     4021 accaatggct taatgttccg cgtggcacat gccccatata gcgtcctttg tattctttag
     4081 aattatcgat cacataagga gcacaagtac tctggtctac ttttaaattt tcaactaaat
     4141 tattaaacgc ttttaaagca ttatttgcaa cgatttttgc ttcaatacaa cgagcagctg
     4201 ttcttccaag tgtgctaaat acagcattta aaggaagtcc tgtttctttt aagaactcat
     4261 ctaccacagg aacaacattt tgattacctt tagcataatt tacaacgaca tttgctaaag
     4321 gtcctacttg cataggattt ccttcatagc gtggagcttt aatccagcta tatttaccct
     4381 tagtatcaaa cactttagaa tggacattat ttccatgatg atctacgctt tctccatcta
     4441 caagtcctgt ataatttgga tttgttttgc catcataagg atgtaaaggt tcattgtctg
     4501 cataccaaga atgagttgcc tcttcagtaa tcttatcttc ttctacttca taaaccttgc
     4561 ttaaatctcc atttttgata ataccacttt caaaaagcca ttcatctctt ccgatttgga
     4621 attctttaaa ggtataaaga ttatttaccc ctatatcatt taaaacactt gcttcatgtg
     4681 cataagcttt tcctgccatc acaagatcag gataatacgc acgattaaca aagtcttgca
     4741 cttcttggaa tttaaccata tattcaccca ttcttgcagg atcgagtaaa tccataacgc
     4801 aagttacacc accaacggtt aagctttgtg gatgtggatt tttagctcca aaaatcgcca
     4861 tacattgagc aatgattctt tgaattctta aacattctag atagtgagaa agaacgatta
     4921 aattttgctc aggacttaaa cgataagttg gatgaccata atacgcatta gcaaaaggtc
     4981 ctaaatttcc tttatctaca aaagttttaa gtctttgttg cacttcaaga agtttatccg
     5041 cacctgttgc ataaggattt gaagtgtatt taaaagcttc atcgcttgct tttttaacat
     5101 cagcacttaa agcacttacc acatcagccc aatcaagccc atgaagttga taaaaatgca
     5161 caatatgatc gtgtaaaaat aaagccgcat tcattaaagt tcttgttaaa agcgcattta
     5221 aaggcggagt aatacctaaa gcattttcaa cagcaactat acctgcttta taatgtgaaa
     5281 aagtacaaac tccgcaaatt ctttgcgtca taaaacccgc atctcttgga tcacgccctt
     5341 ttactatggt ttcaatacca cgccacaaag tagagcccgc ataagcttct tttaccacat
     5401 tgttatcatc aacaacaact tcaactctta aatgcccttc aattcttgta ataggatcta
     5461 cgattatttt ttgactcatt tttattcctt atctttttgc atggaagata taactgcgtg
     5521 tgctgctata gcaacgcctg tgagtgtaag cacacctata ccgattttat ctgaaacact
     5581 atccgcaccc aaaccaaaaa cggtatcaaa tttacgacta gccataggct cttcaaaagg
     5641 tcccatagta tcccaaaaat taggctcaga acaacctata caaccatgcc ctgcttgaat
     5701 aggccaagaa gtgtgctggt taaatctctc tcttgagcag ttattaaaag tataaggtcc
     5761 tttacaacct actttataaa gacaaaaacc ttgttttgct ccttcatccc caaaagcatg
     5821 tacaaattca cccgcatcaa aatgtccgcg tctttcacaa agatcatgaa ttcttaaacc
     5881 ataagcccat tttggtctat tatacacatc aagtgctggt aactcaccaa ataataaata
     5941 atgaagtaca ttacccacta tatttttttc acttggagga cagcctggaa cattgatcac
     6001 agttttgctt gttactttgc ttaaaggctg cgcgttgcta ggatttggtc ttgcagcttg
     6061 aattcctcca aagctagaac aggttcctat agcaaaaatc gccaaagcat tttcacttgc
     6121 catttttgaa agctcatagc ctgtttttcc atgtgcacct atggttaaaa aatgctctgt
     6181 atcacccata gggataccac cttcaaccat taaaatgtat ttatttttat gcttttgaat
     6241 ggcactttct aaattttctt cagcttgcca acctgctgca gccatcactg tttcgtgata
     6301 ttctaaagaa atataatcaa aaatcaaact atcaatcgtt ggagtatcac ttcttaacaa
     6361 actctcgcta cagcctgtac actcagccat atgaagccac acaacaggaa gcctatcagc
     6421 aagctcagca gcttttgcca ccataggagt aaaactcgct ggcaaagcca aaaatgcagt
     6481 catagcacct gcccatttca taaaatccct tctagaaaaa cctgactttt ctaatgcttt
     6541 tgtaatacta tcattgtctt tcaaagaagg aagcttttca agagccgata aacgcgactc
     6601 tatttgatga taatcaatca ttatatttcc tttataacat gaaatttatt ctctataaat
     6661 aataaaataa agaaagttaa aataaagtta aaaacttact ctcataagta aatattagca
     6721 tcactcttaa ttaaagctta atcataagcc ttttttaagt ttgcgaatca aaaatcttgc
     6781 aggatgaata gcgtggatgt attttttttc taaacacaag ggttcattat ttatcaatgc
     6841 acacaaatac cttgccgcta aaacacttgt actaaaaccc cttgacccat gagcaaaatt
     6901 aaaatacaaa ttacaagaca ttttagctgg tttttgctcc ttattttttg tccataataa
     6961 agctttatat tcttctttat aaaacgcttc atcataagca tttccaacta tcataaagcg
     7021 atcactcgaa taagatctaa aacctacttt agaacctatg atttctaatt ttgtattttt
     7081 atccataaaa tcggctatat tttctatatt ttgtttatca tcttcttctt ttgattctaa
     7141 acttgcatta agcctatcat aacttgcacc aattacttgc aaatcatctt ttacagggca
     7201 aatataagcc ttagaagata aaggaaatgg ggtatctaaa aaaggtttta gatgtgtaac
     7261 ttgacctctt actttgctta atttcatctc atcataaaaa acaaagtctt ttgcatctgc
     7321 acccatagca taaatcaaaa ccgcataatc acttttaaca acatcatttt taaattttaa
     7381 actaaaacac ccattttcaa atttataagc ttgaaattca tgattaaaat atatacaagc
     7441 tttgcttttt tcaaaaagat ttttaaccaa tttttttgga aaaatcactc caccctcttc
     7501 taaaaaagct tgattttttg aaattttaaa caaaacattt tctctttgcg tgtcaaatct
     7561 ttcttgcatt aaatcattat gtgcaaactc caccacaccc ttaaattcta aatctaaaat
     7621 ttgtctataa aaacgacttg cctctataaa agaaagctct gaaaactccc ctaaatttac
     7681 cttaggcttt aagattaaag agcttaaaat tccactttca tttccacttg cacccttgcc
     7741 taattctaaa tgtttttcaa aaatatctat ttcaaaacct cttaaactaa gctcataagc
     7801 taaaacagca cttgatatac ctgcaccaat aatagctact tttttatttt ttaaagatga
     7861 aaatgttctt gaaaaatacg cttctttgtc tttaaactca agctcatttt ccaaataagc
     7921 tttaatcatt tctctttttc taaaaccttt ggttttttct actctaaagc catatttttt
     7981 taaatttttt tgcaaaaaac ttgccgaaga aaaggtgcaa atttgtgtat tttttttaga
     8041 aagccttgcc acttcaaaga ttaaattttc atcaaacatt tgcgagtttt tatttggaga
     8101 aaatccatct aaataccaaa catcagcttt aaaatccaat tcttttaaaa cagctatatc
     8161 ttcaaaaaca agatctaaaa aac
//
LOCUS       DARBAR010000073         7852 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.073, whole genome shotgun sequence.
ACCESSION   DARBAR010000073 DARBAR010000000
VERSION     DARBAR010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7852
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.073"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..99
                     /locus_tag="SB815_001239"
     CDS             <1..99
                     /locus_tag="SB815_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HEG0906967.1"
                     /translation="DKNAKFESFVKIIDFLKAKEHENFQILTEKNK"
     gene            96..779
                     /locus_tag="SB815_001240"
     CDS             96..779
                     /locus_tag="SB815_001240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG0906968.1"
                     /translation="MKTLFLNHKYQASYITFIVFIPLLFVIFHSNDFFKMEIKNEDSF
                     SLAIKQFTQTNPTNETKPTESIIEPIKPKPQPKVIKKTPEKMQKKIKKTPPHPIPNKT
                     PIAPTQEVKTFAKTTDTNVKPKITQLTQGKDNHPVLKEIQKAIQQAQFYPRQAKKMRM
                     QGTVKVEFLWKENKTLADLKIIEISGYDLLDKSALESIRKASLNFPHYNGDLRITLPI
                     IYDFKTLRG"
     gene            complement(792..1661)
                     /locus_tag="SB815_001241"
     CDS             complement(792..1661)
                     /locus_tag="SB815_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906969.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYMNYVARNDGSIRLNGEVNQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGGGANAMKTIDPQKINKKDDKENNI
                     KEKEDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(1665..1826)
                     /locus_tag="SB815_001242"
     CDS             complement(1665..1826)
                     /locus_tag="SB815_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906970.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            1921..2904
                     /locus_tag="SB815_001243"
     CDS             1921..2904
                     /locus_tag="SB815_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HEG0906971.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGIIGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEAIEIGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(2990..4078)
                     /gene="aroC"
                     /locus_tag="SB815_001244"
     CDS             complement(2990..4078)
                     /gene="aroC"
                     /locus_tag="SB815_001244"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEG0906972.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFGVGTFV
                     SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGL
                     GEVLYDKLDSKLAHALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4078..4752)
                     /locus_tag="SB815_001245"
     CDS             complement(4078..4752)
                     /locus_tag="SB815_001245"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEG0906973.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(4739..5179)
                     /gene="rnhA"
                     /locus_tag="SB815_001246"
     CDS             complement(4739..5179)
                     /gene="rnhA"
                     /locus_tag="SB815_001246"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HEG0906974.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5166..6152)
                     /locus_tag="SB815_001247"
     CDS             complement(5166..6152)
                     /locus_tag="SB815_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906975.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFANKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKERDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6222..>7852
                     /locus_tag="SB815_001248"
     CDS             6222..>7852
                     /locus_tag="SB815_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEG0906976.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPIKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEFLLG
                     ICKVNLAFLNNVKIKNSTLALKKQLFTLIDKNLNL"
BASE COUNT         2833 a         1350 c          996 g         2673 t
ORIGIN      
        1 gataaaaatg ctaaatttga aagctttgta aaaattatag attttttaaa agccaaagaa
       61 catgaaaatt ttcagattct tactgagaaa aacaaatgaa aactttattt ttaaatcata
      121 aataccaagc ttcttatata acttttatag tctttatacc tttacttttt gtcatttttc
      181 actcaaatga cttttttaaa atggaaatta aaaatgaaga ttctttttct ttagcaataa
      241 aacaatttac ccaaactaat ccaacaaatg agactaaacc aacagaatcc attatagaac
      301 ctatcaaacc aaaacctcag ccaaaagtta ttaaaaaaac tcctgaaaaa atgcaaaaaa
      361 agataaaaaa aacacctcca cacccaatac caaataaaac cccaatagca ccaactcaag
      421 aagttaaaac ttttgcaaaa acaactgata caaatgtcaa acctaagatc actcaattaa
      481 cacaaggaaa agataatcac cctgtattaa aagaaatcca aaaagctata caacaagcac
      541 aattttatcc aaggcaagca aaaaaaatgc gtatgcaagg aactgtaaaa gtagaatttt
      601 tatggaaaga aaacaaaact ttagcagatt taaaaatcat agaaatctcg ggatatgatt
      661 tgttagataa aagtgcttta gaaagcataa gaaaagcttc tttaaatttt ccacactata
      721 atggagattt aagaattaca ctacctatta tatatgattt taaaacccta agaggataaa
      781 attataattt gctacactct cttatctaca atttgtgctt cttgattttc aattttattt
      841 tgaaaatctt tacttaaatt ctgacttaat tcttgcaaag atttttgctt cagtttttca
      901 aattcttcag gattgctagc ctcaagcttt gcctgctcat cagcacttaa agcacttaaa
      961 cctttttctt gagctttttg aagcaaatct tcgtcttctt tttctttgat attattttcc
     1021 ttatcatctt ttttattgat tttttgcgga tctatggttt tcatagcatt agctccacca
     1081 cctgatgctt ctttaatgtc gcttaaaatt tctctcatgc taggttcttt aacatcacta
     1141 tcatcaactt taccatcttt atttacatct ttatcaataa aaaaatttaa tttttcttct
     1201 atatttgcat catcagatat tttttcatca cttgttttaa agcctaaatt ttgcatactt
     1261 tgttgaaggg tacttgtatt aaaatttaat tttacacttt gttgtttatt atttaaattt
     1321 gaatttaaag aaccaaaatt atcttttaca ctttcaaacc aatttgaaac aaattgattt
     1381 acttcgccat taagccttat actaccatca tttctagcaa cataattcat ataagaaccg
     1441 aaattttttt gtaaactact ataattttca tcgcttaaat ttaaagctat aagttcacct
     1501 tgcttatttt caaaaacaac cttaacacca tcgctattta aactcgaaag atcttgcacg
     1561 ggaattttat cttgatcttc tttttttaat acgctaagct cttttttatc aacattatta
     1621 gttaaagaat gggttaaact agcagaagta tcgattttca ttatttatcc ttttttacat
     1681 tttgcaaata aacctaaacg acacattttt ctctcatgtg aattttttaa agaattacac
     1741 tttttaagtt cttgctcgta gttagcacaa gaatttgcaa aagcaaaaga actcaaaatg
     1801 cttaaaacca aaattatttt taacattttc caatccttat tttaaagatt ttttagttaa
     1861 aattatacct tttataatcg acaaaatctt aaaaaacttt ataatctcag aaaggaatca
     1921 atgaaagcat tagctctttt tagcggtggg cttgatagta tgcttgcaat gaaactcatc
     1981 actgcacaag gcatagaagt taaagctcta aatatcaaca taggttttgg aagcacaagt
     2041 gataaaagcg aaatcatgaa aaagcgtgcg gcaatggtag gtgcagattt tgaaatgata
     2101 gatgtaagaa attcctatct tcaagaagtg ctttttaatc cacaatatgg ctatggcaaa
     2161 cattttaatc cttgtataga ttgtcatgct tttatgttta aaactgctct tgctatgtta
     2221 aaagaagaaa atgcaagttt tatcatcaca ggagaagttt taggacaacg ccctatgagt
     2281 caaagaagtg atgcaatggc aaaggttaaa aaacttgctc ttgatgaaga agatttaatc
     2341 ttgcgtccta tgtgtgcaaa aaacctacct ctaaccaaac ctgaaagaga aggttgggta
     2401 gatagagaaa aactcgaagg tattattgga agaagtcgta aaagacaact tgaacttgca
     2461 gctaaatttg gcttagaaga ctttgaaagc ccaggtggag gttgtttgct aactcttgat
     2521 agttttgcta aaaaaattcg agatttcata gaatttgaca aagatatgca ggttaatgac
     2581 gcacaacttt taaaatatgg tcgtcattta agattaccca atggagctaa aatgatcata
     2641 ggtagaaatg aacttgaaaa tactctttta aaaggtttaa aaactcctaa atatgaagca
     2701 atagaaattg gggatttaat cggagcttac tctttggtag atgaaaaaat ttcagaaaaa
     2761 gacttagaac ttgccttaaa aatagccctt acctatacta aacacgaagt aggaaaaagc
     2821 tatgaactta aatttaaaaa tcaagcttat acaagtatag cttttgaaaa taaggctgat
     2881 attaatcaat tttttattag ttaaagtata aagtatttag caaaacaagc gatatagtat
     2941 ttgaatcttt tcaaaatatt gcaatcaagc ccatgaaaat gggctttttt tattttaatc
     3001 cataagcatt ttttaaattg tttaaattcg cactcgcatt caaaagcaaa caatcagcca
     3061 aaactaaacg taccatagca ctagctacaa cacttcctct aacacctaca caaggatcat
     3121 gcctaccttt gagttcaaat ttcaaattat tgccaaattt atctatactt tcttgcttgg
     3181 caaaaataga aggagtaggt ttaaaataag tttttaaaat aagattttct ccatttgaaa
     3241 ttcctcctaa aattcctccg ctatgattgc ttaaaaactt gccatctttt aaagcatcat
     3301 tattacacga tccgcgcatt ttgcttgcat taataccttc gcctatttca actgctttaa
     3361 cagcattaat tcccattaaa gcatgagcta atttagagtc taacttatca taaagaactt
     3421 ctccaagtcc tataagcata ccactaactt ttgtaaaaac agcagcgcct acgctatctt
     3481 ttgaatttct agcatttaaa atttcatttt taaagtcact ttctagtttt ggatcaaggc
     3541 aaaaaatttc acttttctta gcaaattcaa aatcaaattc ttcttctttc aaatttgata
     3601 caaaagttcc tactccaaaa acaccacttt gaacacaaat atcaaattca cgcaaaagca
     3661 tcgctgcaac tgcaccacca gccactctag caacactttc cctagcgctt gatctacccc
     3721 cacccctatg atctcttatg ccatatttat aaaaataagt aaaatccgca tgagcaggac
     3781 gaaatagatc ttttaaatta tcataatctt tagaatgagc attttcatta aaaactacta
     3841 tagctatggg atgacccgtt gtatatcctt caaaaacccc gcttaaaacc tgagctttat
     3901 cgctttcttt tcttggtgtt gcaaatttac ttccgccttt gcgtttatca agctcatttt
     3961 gcaaaaattc ttcatcaaat ttaaccccag caggcattcc atcaataata catccaacag
     4021 ccacaccatg agactcacca aaacttgtaa atttcaatct cgtaccaaag gtattcacta
     4081 taaagctcct aatttctcaa gtgcaatttt tgctgccatt tgctgtgctt cttttttgct
     4141 tcctgcaata gctcttgcaa gttctttacc atcaagcatt aaagcaattt caaattgctt
     4201 taaatgatca gggccaaaag cacgcactgt ttcatactgc ggagtttgtc cgatttttcc
     4261 ctgtgtaatc tcttgtaatt ttgttttata atcttttata agaatttttg catcaatttg
     4321 agggaaattt ttttctataa gccttaaagc aatagttttt gcaaactcga acccagcttc
     4381 taaatgtata gcacctataa tggcttctaa cgcatctgaa agtatagaag gcttttcttt
     4441 tcctccattg ttttcctcag caacactcat aagaataaaa tcgcccaaat ttaaactatt
     4501 tgcaattttt gcaaaagact tttcatttac taaagctgct ctaagcttag ataaatctcc
     4561 ttcggcatct ttggcgaatt tatgaaaaag gtattcacct acaactaaat caagcacggc
     4621 atcacctaaa aattccaagc gttcgttgtt gtaagatttt ttaaaacttt tatgggttaa
     4681 agcatgtata agaagatttt tatctttaaa ttcataagtt aaactctgct ctagcttttc
     4741 aatgtttttc atcattttcc cttgcaattt tcaaagcagc ttcacgcgcc aatgtatcac
     4801 acctttcatt ttccaaatgt ccattatgtg cttttaccca aaaagcctta atcttatgag
     4861 attttgccac tttaatatat tccttccata aatctatatt ttttttacct ttaaaatcct
     4921 tttttatcca tccttctagc cattcattaa tactttgaac cattaggtta gaatctgtaa
     4981 aaagcgaaat ttcacaaggc tcttttaaag ccttcaaaga ttcaataatt gccattagct
     5041 ccattctatt gttagtggta ttagcctcag ctccaaaacc ttccttttga tactccttat
     5101 aacgcaaaat ataagcccat ccgccaaaac ctggattatt aagacatgag ccatctgtat
     5161 aaatttcaat gtgtttcatt gtttttcact tcataaataa ttttacaagt attaaactca
     5221 taacaaacag gacagtgata aaaaaacaaa ggcattacat ttttacactc agaacaacga
     5281 tatgaaaatt ctaaccccgc attaaaagaa ttatctttta aaatttttaa cattttaaag
     5341 ttagaatttt taaaaacaaa ctggtgcgta tcatcatgct ttgaaatttt acccaaagca
     5401 taaaagaatt ctaaaaaatc ttgattttct aaattaaacg cttcattttc tctataaagc
     5461 aaatcacaaa tatcaaaaaa attttgccct aaaaacatat gatatttttc aaaaactaaa
     5521 cgccccaaca taggattatc ttctatttta aattctaaaa gttttttctt tttttcttca
     5581 tcagtaatat taaaagtaca aagttctaaa gctttgataa aatcacgctc tttttgtaca
     5641 tcttcattaa gctcaaaaag acattctaaa agttctaaat tttctttata agaacgaagt
     5701 tttaaataaa caatttttaa aagttttaag gcttgtatat ttcttggacg cagttttaaa
     5761 gcttgtaata aaacttcttt tgcacgctct aaaaatcctg ctttaaaata aacttttgct
     5821 aaagaaagga aaataaattc tctttcttgt ttatctttac atttttcaag agcaatcaaa
     5881 taaatttgag ttgctttttc aaattccccg cttttagtaa aaatttcagc caaaaaactt
     5941 aaatttccaa aactcaagct actatttctt aataactctt tatgagcgtt atccatttca
     6001 aattttttta taaatttttc aagcttttgt tcttcatctt tgttagcaaa tattttccaa
     6061 atataatttg caacagctac aacaaatact aaaatggtta aaattataag ccctactaaa
     6121 gggtctctgt attctacaaa gaaaaaatcc atagtctcgc tctaaaaatt ttatgccaaa
     6181 ttatagccaa atctttgtat aattttaaca aggtttgtaa aatgataact aaagaaagta
     6241 tagaaaattt atcccaaaga cttaatattg ttgatattat agaaaattat attgaagtaa
     6301 aaaaacaagg ctctagtttt gtatgtatct gtccttttca tgcagataaa aacccgtcta
     6361 tgcatatcaa tcctatcaaa ggtttttatc attgttttgc ctgcaaggct ggtggagatg
     6421 cttttaaatt tgtaatggat tatgaaaaat taagttttgc tgatgcagtt gaaaaagttg
     6481 caagccttag taattttact ttgagttata caaaagaaaa acaagaaaat aaaaaagagc
     6541 taaagtctat actaccaagc ttaaatgcgt attttaaaga taatctcaaa caccacaaag
     6601 aagttttaac ctatctttac cagagagctt taaatgacaa agatatagcc aaattcgaat
     6661 taggttttgc aggagcaagt gaagatagta taagattatt gcaaaatcaa aaaattcctt
     6721 tagaagatgc tatgagtgtt ggagctttaa aaaaagatga aaataatgaa ttttacgcaa
     6781 gttttatatg gcgtatcacc tttccaatct acgatcataa agacttattg gtagggtttg
     6841 gagggcgcac tttaaatccc aatgtaccgg caaagtatgt aaattcaccc caaaatatac
     6901 tttttgataa aagtagaatt ttttatgctt ttaacatcgc taaagaaaat atagccaaaa
     6961 aaaaagaaat aatagtatgt gaaggctaca tggatgcaat agcttttcac aaagcagggt
     7021 ttaacaatgc tgtagcagtt cttggaacag cattaaccga acatcatcta cccttaatcc
     7081 gccgttatga tgcaaaagtg attttatgtt ttgacaatga tgaagcagga ttaaaagctg
     7141 cgacacgatc tgcattttta ttaagcacaa acaaaataga cggtaaagtg gcaattttgc
     7201 aaggcggaaa agatcctgct gagctcgtag caaaaaatga aagcacaaaa ctccataata
     7261 tactcgatga aggaatagag cttggtgaat tttatatcag acgcttaata tccactcatt
     7321 ccataatttc tgctcttgat aaacaaaaag ctttagaaac tatacaaaaa ttcaccttta
     7381 atcttgaacc tttagtggca aattcttaca ctagtctagt ttcaaattta ttaaaagtgg
     7441 atgaaaaatt tattgtctta tcacaaaatt caaaaaaaac catacaaacc cctttaattt
     7501 ctcaaaataa atacaatttt cctaaagaaa aaattcacat tgcagaatta gaacttatag
     7561 cttttttaaa acagcatcca gatatatgta acgattttaa gcaaattagt gatagtgttt
     7621 gttttaaaca taagatttta ttggataaaa ttttagaaaa aaaaggttat gaagatagtg
     7681 atattagaga atttgaaagt aaaaatattc gaaaaaattt aaactatagc gaattcttgt
     7741 taggtatttg caaggttaat ttagcttttt taaacaatgt aaaaattaaa aattctacac
     7801 tcgcattaaa aaaacaactt tttacgctta ttgataaaaa tttaaatctt tt
//
LOCUS       DARBAR010000074         7834 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.074, whole genome shotgun sequence.
ACCESSION   DARBAR010000074 DARBAR010000000
VERSION     DARBAR010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7834
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.074"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(57..141)
                     /locus_tag="SB815_001249"
     tRNA            complement(57..141)
                     /locus_tag="SB815_001249"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(105..107),aa:Leu,seq:tag)
     gene            complement(146..222)
                     /locus_tag="SB815_001250"
     tRNA            complement(146..222)
                     /locus_tag="SB815_001250"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(186..188),aa:Arg,seq:tct)
     gene            complement(237..313)
                     /locus_tag="SB815_001251"
     tRNA            complement(237..313)
                     /locus_tag="SB815_001251"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(277..279),aa:Arg,seq:tcg)
     gene            complement(317..393)
                     /locus_tag="SB815_001252"
     tRNA            complement(317..393)
                     /locus_tag="SB815_001252"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(357..359),aa:His,seq:gtg)
     gene            complement(418..495)
                     /locus_tag="SB815_001253"
     tRNA            complement(418..495)
                     /locus_tag="SB815_001253"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(458..460),aa:Pro,seq:tgg)
     gene            complement(538..1386)
                     /locus_tag="SB815_001254"
     CDS             complement(538..1386)
                     /locus_tag="SB815_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEG0906977.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIISQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNATKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(1386..2048)
                     /gene="cgpA"
                     /locus_tag="SB815_001255"
     CDS             complement(1386..2048)
                     /gene="cgpA"
                     /locus_tag="SB815_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HEG0906978.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(2038..2241)
                     /locus_tag="SB815_001256"
     CDS             complement(2038..2241)
                     /locus_tag="SB815_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906979.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(2307..3551)
                     /gene="eno"
                     /locus_tag="SB815_001257"
     CDS             complement(2307..3551)
                     /gene="eno"
                     /locus_tag="SB815_001257"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEG0906980.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIEFESDEYLGEKL"
     gene            complement(3551..4582)
                     /gene="recA"
                     /locus_tag="SB815_001258"
     CDS             complement(3551..4582)
                     /gene="recA"
                     /locus_tag="SB815_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEG0906981.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            4688..5548
                     /locus_tag="SB815_001259"
     CDS             4688..5548
                     /locus_tag="SB815_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HEG0906982.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILNFDQSLYVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTNGVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDFLI
                     PSEYEEARNS"
     gene            5560..5829
                     /gene="fliQ"
                     /locus_tag="SB815_001260"
     CDS             5560..5829
                     /gene="fliQ"
                     /locus_tag="SB815_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HEG0906983.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            5826..6602
                     /locus_tag="SB815_001261"
     CDS             5826..6602
                     /locus_tag="SB815_001261"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEG0906984.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLVSPK
                     PKNIGILGDGFNFIQILDRNKDFIHLRIGCKTKSSKMYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRANINFDYRFCPLNTHFFWAEFKLNFG
                     FDTLKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGTNLENEVIII"
     gene            6794..7444
                     /locus_tag="SB815_001262"
     CDS             6794..7444
                     /locus_tag="SB815_001262"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906985.1"
                     /translation="MKNITLTKIPIGEGKEPCLNSKKIVLSLATISFLASCANAKLNS
                     EIKTYDEVNKNVKTRSASVYSPQAKINTTINSLHNQQVTITGNGTSNSLTIGSSGTLG
                     SIGNTGKIIYAHANGSNTLTLANLTNNRTINGKIGIENNGNFTGTIAVNTFENTGQIN
                     GQIYMGIWGNNSGTLNIDKFDNSGTIIDNNKGVFLKERIPTYKPLITVVLLVQIRV"
     gene            7507..>7834
                     /locus_tag="SB815_001263"
     CDS             7507..>7834
                     /locus_tag="SB815_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906986.1"
                     /translation="MGVAINTKIDTFTNNGFINSPGSGQWNNGIWISSNATIEKLVNN
                     GTIKGGHSAIMVTSQHIKTVENTGIIHAEGEWGSSILLEYGGFIEHIINTGTISSNNV
                     GIGSAYG"
BASE COUNT         2596 a         1347 c         1231 g         2660 t
ORIGIN      
        1 aaatgaaata aaaatttatg agaagtcaac tcttatttga aaatgataaa agtaagtggt
       61 gcggatgaaa ggacttgaac cttcacgcat tgctgcacca gatcctaagt ctggcgtgtc
      121 tgccaatttc accacatccg caaagtggta cgcccaagag gattcgaacc tctgacctac
      181 ggcttagaag gccgttgctc tatccagctg agctatgaac gcatataaaa tcttggtggt
      241 gcgcccgata ggaatcgaac ccataaccta cagatccgaa gtctgtcgct ctatccagtt
      301 gagctacgag cgctagtggg gtgagtgatg ggaattgaac ccacgaccct caggaccaca
      361 atctgatgct ctaaccgact gagctacact caccattttg tataaattta taaaaaatgg
      421 tcggggtgaa aggattcgaa ccttcggccc cttggtccca aaccaagtgc gctaaccaga
      481 ctgcgctaca ccccgaataa ataaaaggaa atattttatc acaaaataat tttaaagtca
      541 aggattttca tctcttattc ttaaaaacac cggaaagcga ggtaaggaat ttttggtcaa
      601 tccattaaat ttataagtca caatactacc aatttttgga ggattttttc tatcttcatc
      661 ttttaaacca ctgcctattt taatgatttg tccattaggc attttacaaa gtaaggcacc
      721 tacttgattt tcaaatttac ccttgccctt gcgaaatcct accaactcac attctgcatc
      781 atcatagggt tttaatttcg tggcattttt acttctgcct ttttcataag gacttaaatt
      841 tttgcgtata acaatacctt caccttgatt ttttataatg ctttcgtaaa attgatttaa
      901 attattttga ttttcaactg gaatttgaga aataattttt atataggcac taggatattt
      961 ttgcaaatac tcttctaaaa cagccaaacg atttttaaga gtgcaagtag aaatttgaaa
     1021 ttcttcgcaa gcatttggta catcaaaaat attataagtt acttccttcc ataaggtcaa
     1081 attgctatcg ccactacgaa ttaaagctga aatttcatca aatttatttc ttgctatcca
     1141 aagctcacca tcaatagcaa aaggagggaa attttttgta aaaaagtcag gagtttttat
     1201 tttgtagttt tggcgagttt ttagatattt cccatcccaa attccacgca ctccatcaag
     1261 tttttcgctc atcaaataag cattaaaatc tttagagtta aaatcttgct tatcgaattt
     1321 gctaagaagt aaaatttcat tagcaaaaac taaacaagca caacatatta aaaaaacaaa
     1381 cctcatcaaa gcagattaat catatatcca gttgcatctt tttgaatatt ataattataa
     1441 gttccatcaa gatatattac aagtcgataa tatcctttat gagatccaaa gtctatgcgt
     1501 ttaaaaatag aattgctaag gcgtatgttt tttgtagggc taatcatttt agatctaaaa
     1561 tctataacga ttttacttgg atttcctact gaaaaatctg taatcatttc atcactagtg
     1621 ttaagtttta ttttattttt ataaaccgca taagaaataa aatcataaat ctttgcaacc
     1681 tgtaaaggta tttcaacatt ggctgttgag tttgattctt gtttagagct atttttttca
     1741 ggtatagtaa ctgaaacatc aagtactttt gaaggatcag ggcttttaaa tcttgatata
     1801 gtataagtat cgtgccaatc aatactttta ttgacatcta aatcgatctt atcttcactt
     1861 ccgtctaaat tgatataatt aaaagtgatg ctttttaaaa ttcttgcact agaattaaat
     1921 ttaacttcct ctttttgaaa ttcaggtgga gcaaccaagg ttatattttg atctgtcttg
     1981 aaaggatttt catcagcata taaaagagag gtaaaaataa aaaatattgc caaaattcta
     2041 gttttcattt gggtataatc cttttaattc aaaataatct ttttgtgctt tagcattttg
     2101 ttctttgagc aaaataatct ttttattaag ctcttctttg gtattttcta agcttaataa
     2161 agtatctaaa gaatactgcc caaaaaacat attgccaaaa taaatcgctc caattacaac
     2221 aagaaaagcc caaaaaatca tttttataac atgggtataa aaactttttt ttcttgtgct
     2281 ttcgtcgtat tctttaagta aatcgctcag agcttttctc ctaaatattc atcgctttca
     2341 aattcaattt caagtaagcg attgtatttt gcggttcttt cgcctcttgc tagggctcct
     2401 gttttaattt gtcctgtatt taaagccaca gcaaaatccg ctataaaagc atcttcactt
     2461 tcgccgcttc tatgactcat cacacattta tagttatttc tttgcgctaa acgcacagtt
     2521 ctcatagttt gggtaatagt tccgatttga tttggtttga taagtacagc atttgccatt
     2581 tttttgatga taccttctct taaaatatct tcattggtca caaacaaatc atcgcctaca
     2641 agctgaattt tattgcctaa tttttcagtc agcttgatcc agccttcaaa gtcattttca
     2701 gctaagccat cttcgatact gcaaattgga tattttgcac aaagttctac atagcgttcg
     2761 atcaaagcct cgcttgaaaa agccttgcct tccatgtggt atttaccatc tttgaaaaat
     2821 tctgtacttg ccacatcaag agcaattttt acacgatttt cataacctgc ttttttgata
     2881 caagtcatta aaagatcgat aggttctgtg ttgttagcta aatttggagc aaaaccgcct
     2941 tcatcaccta aagccgtaga atgtccagaa tttgcgagtt ctttttttaa tatcgcataa
     3001 atttcacaaa ctgaacgcaa agcttcttta aagctagtaa aaccaaaagg catgatcata
     3061 aattcttgaa aatctacatt gttgtttgca tgagcaccgc catttatgat attacacatt
     3121 ggcacgggta aaatgctcgc atttgcacca cctaagtagc gatataaagg cattcccaaa
     3181 gcagctgcag ccgcacgagc tgttgccata gatacgccta aagtcgcatt tgcacctaaa
     3241 tttgagtaat tatttgttcc atcgagctca cgcaaagtat catcaagttg agtttgatta
     3301 aaagcatcta gtcctaaaat ttcatctgca atggtctcat tgacatttgc aacagctttt
     3361 aaaacgcctt ttccgccaaa tctttcatca ttatcacgca attctaaggc ttcttttgaa
     3421 cctgtacttg caccacttgg aactatggcc gcacctacac ttccatcgct tagcgtaact
     3481 tcggctttta cggttggatt tcctctacta tcaagaactt cataggctct aacatcttca
     3541 attactaaca ttattcttct ccttcgtcat cttcgctacc gctgatcata ccttctattc
     3601 ccatagaatt ttgaattgct tttgtgattt catctgcaat ttcagggttt tcttttaaga
     3661 aagcttttga attttctcta ccttgtccaa gttttttatc tttataagaa aaccacgcac
     3721 cacttttatc tacgatatca agttttacac cataatcgat caattcacct tcacggctta
     3781 aaccctctcc aaacatcaca tcaaattcag cttgtctgaa tggaggagca actttatttt
     3841 taactacttt tactttaacg cggtttccta taggttcttc gttttgtttt aaggttgcta
     3901 cttttctaac atctaaacgc acagaagcat aaaattttaa tgcatttcca cctgttgtgg
     3961 tttcaggagt accataaccc atagcaccga ttttcatacg aatttggttg ataaaaatta
     4021 ctgtggtatt cattttatga actatacctg taagttttct tagagcttga gacataagtc
     4081 ttgcttgaag tcctacatgt tgatcgccca tatcgccttc aatttctgct tttggagtaa
     4141 gtgctgcaac gctatctact acgataagat ctactgcgcc acttcttgct atagtttcta
     4201 caatttctaa ggcttgttct ccaaaatcag gctgagaaac atacaaatca tctgtattta
     4261 cacccaaatt tttagcatat tttacatcaa gcgcatgttc tgcatcgata aaagcacaaa
     4321 ctccacctgc tttttggcat tctgcgataa tatgtaaagt tagagtggtt ttacctgaac
     4381 tttcaggtcc ataaatttct ataattcttc cttttggaac accgcctata cctaaagcaa
     4441 gatcaagccc aactgaacct gtgcctatgc tatcgatttg ctcgacttct ttatccccta
     4501 gtcttaaaat agtgcctttt ccaaaggttt tatctaaact ttttagggca gcgtctagag
     4561 attttctttt attatcatcc ataactttcc ttaaaaattc taaattttta gttagaattc
     4621 taacaaaata aaattaaata atgatttatt ttgctagaat taaagcaaag atttaaagga
     4681 agcatagatg aaaaaaatta ctattgcaca ttctcctgat gctgatgata tttttatgta
     4741 tatggcaatt aaatttgggt ggatagggaa tgattttgct tatgaaaata cagctttaga
     4801 tatacaaact ttaaatgaat ttgccttgaa aaatgaattt gatgctacgg ctatttcttt
     4861 tgggctttat cctttaatcg cttctgagta tgcactttta cgcacagcag tgagttttgg
     4921 tgaaggttat gggccaaaac tcatcaagaa aaaagacacg catttaaaaa gaaattttaa
     4981 agtcgctttg agtggagcaa ataccaccaa tgctttgatt tttcgcatga aatatcctga
     5041 agcaagaatt atttataaga attttttaga cattgaaaat gcggttttaa gtggcgaagt
     5101 agatgcgggg gttttgatcc atgaaagcat tttaaatttt gatcaaagtc tttacgtgga
     5161 agcagaactt tgggatatat ggcttgaatt tgctaaagaa aatttgcctt tgcctttagg
     5221 tggaatggct ttgcgtcgtt ctttaccttt aagcgacgcg attaagatcg aaagagattt
     5281 aaccaatggt gtaaaaattg ccgatgcaaa tcgtaaaatt ttagccccta tgcttatgga
     5341 aagaaaactt atccgtgttg atgaagaaaa acttgatact tatcttaatt tatatgccaa
     5401 taaaaactct attagcatga atcaaactca acttttagct gtagatacgc tttttaaact
     5461 aggatatgat tataaatttt atgataaaat catacatgta aatgattttc ttatccctag
     5521 cgaatacgaa gaagctagaa attcttaaaa aggataaaaa tggatgaaag taccttagtt
     5581 gctcttggag tgcaaacctt taaaatcaca cttttacttt ccttgcctat gcttttagca
     5641 ggacttattg cagggcttgt gatcagtatt tttcaagcaa ctacacagat taacgaaatg
     5701 acactttctt ttgttcctaa aatcatcttg gttgtagtta ttttaatctt tttaatgcct
     5761 tggatgacta caactatgat tgattttact gagaatatac taaatcaaat tccaactttt
     5821 atcaaatgat cattgatttt aaaaaatact cttctgtgcg tataggaaat gaatttgaag
     5881 ttttagtttt ggatcaaatt tgtgattttg atggtttttt aataggtggt gcaaacaacc
     5941 ttttagttag tccaaaacct aaaaatatag gaattttagg agatggtttt aattttatac
     6001 aaattttaga tcggaataaa gattttatac atcttcgcat aggctgcaaa acaaaatcaa
     6061 gtaaaatgta tcgctttgcc aaagaaaaca atcttaaggg ttttgagtat ttaagcaaaa
     6121 ttcctggtac acttggcggg cttttgaaaa tgaatgcagg acttaaagga gagtgtatca
     6181 gtcaaaattt aatcaaaatt gctacttctc aaggcgaaat tctaagagca aatataaatt
     6241 ttgattatcg tttttgtcct ttaaatacgc attttttttg ggctgaattt aaactaaact
     6301 ttggctttga tacccttaaa gatgaagctt taaaaaatgc aagaagcaac caacctagtg
     6361 gagcaagctt tggctctatc tttaaaaatc cgaaaaacga ctttgcagga cgtttaatcg
     6421 aagctgtagg acttaaagga tttagcaagg gagatgctat gttaagcgat aaacacgcaa
     6481 attttttaat taataaaaaa aatgcaagtt ttgaagatgc gttttttctt atcgaattgg
     6541 ctagaaaaaa agtctttgaa gaatttggca caaacttaga aaatgaagta attataatct
     6601 aaacacacaa aacaataaaa gtctaaaaaa tttactctta atctaacttt aaataaaata
     6661 caaattcaaa ccatatagtt ttataataat aagtatttaa taatatttta atattctgtc
     6721 gttttatttt gtattttata ttatttttaa aaaatataat atatagaaca aattataaag
     6781 ggaggaaaat cttatgaaaa atatcacatt aactaaaata cctataggag agggcaaaga
     6841 accctgttta aattctaaaa agatagtttt atctttagct actatttctt ttttggcaag
     6901 ttgtgctaat gctaaattaa attctgaaat aaaaacttat gatgaagtta ataaaaatgt
     6961 taaaactaga tcagcaagtg tttatagccc tcaagctaag atcaatacga ctataaattc
     7021 tttacacaat caacaagtaa ctattactgg aaatggaaca tcaaattctt taacaatcgg
     7081 atcaagtgga actctaggta gcataggcaa tacaggtaaa atcatctatg cccatgctaa
     7141 tggtagcaac actcttactc ttgcaaatct tactaataat agaactatta atggtaagat
     7201 tggtatagaa aacaatggta attttacagg aactattgct gtcaacacct ttgaaaatac
     7261 aggtcaaatt aatggacaaa tttacatggg aatttggggt aacaactcag gaactcttaa
     7321 tatagataaa tttgacaata gtggaaccat aattgacaac aataaaggag tttttttgaa
     7381 ggaaagaata ccaacataca aacctttaat aacagtggtt ttattagtgc aaataagggt
     7441 gtagatatag gcaacatagg aaccataaaa aattttaata acaacggaac tatacaaggc
     7501 tcagaagtgg gagtggctat aaatacaaaa atagatactt ttactaataa tggttttatt
     7561 aattcccctg gtagtggaca atggaataat ggtatatgga taagtagcaa tgctaccata
     7621 gaaaagcttg ttaacaatgg cacaataaaa ggaggacatt ctgctataat ggtaacatct
     7681 cagcatataa aaactgttga aaatacagga attatacatg ctgaaggaga atggggttct
     7741 agtatattat tagaatatgg tggttttata gagcatataa tcaatactgg aaccataagt
     7801 agtaataatg ttggtatagg ttcagcttat ggag
//
LOCUS       DARBAR010000075         7603 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.075, whole genome shotgun sequence.
ACCESSION   DARBAR010000075 DARBAR010000000
VERSION     DARBAR010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7603
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.075"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(64..392)
                     /locus_tag="SB815_001264"
                     /pseudo
     CDS             complement(64..392)
                     /locus_tag="SB815_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779367.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
     gene            complement(569..952)
                     /gene="queF"
                     /locus_tag="SB815_001265"
     CDS             complement(569..952)
                     /gene="queF"
                     /locus_tag="SB815_001265"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HEG0906987.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            1112..1711
                     /locus_tag="SB815_001266"
     CDS             1112..1711
                     /locus_tag="SB815_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEG0906988.1"
                     /translation="MKKSIAIIGGSIAGLSAALFFASAKNEELDFDITVFDEGKADLK
                     AAAIYNVPFFPKGAKADEIYTHIKAQIASMLEVKYIDSKVVSISGEKGDFTVNDEQGL
                     GIKADYIIVATGANKSDIKELEDFVIPHELMPKPNKFCFKHHGRQIIKEGIYAAGLAS
                     GVTTMVACAMGSANEAACAILSDIKGAVSVYHDTPTTRV"
     gene            complement(1716..2597)
                     /gene="metA"
                     /locus_tag="SB815_001267"
     CDS             complement(1716..2597)
                     /gene="metA"
                     /locus_tag="SB815_001267"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HEG0906989.1"
                     /translation="MPLIIPENIPAYELLKEHAFIMGLRRAKHQDIRPQEILIVNLMP
                     KKIETENQILSLLANSPLQVNITLLATTSYVGKNTPFTHLEKFYKGLEEVKKHKFDGA
                     IVTGAPVEQMDFEKVAYWEELLEIFDFLKQNVTSSMYICWGAMAALKYFYGVDKISLD
                     KKIFGVYKHDKVSPDLLLTNLDEKVLMPHSRHSSMDEEQILALQKQGKLKILLRNKKI
                     GSALLRDEKNIFILGHLEYFKETLHQEYVRDNFIQKAKNYYDKKGNIKYNWRSNANTI
                     FANWLNYDVYQSTPFVL"
     gene            complement(2680..3951)
                     /locus_tag="SB815_001268"
     CDS             complement(2680..3951)
                     /locus_tag="SB815_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HEG0906990.1"
                     /translation="MNFNKETLALHGAYNFDTQRSISVPIYQNTAYNFENLDQAAARF
                     NLQELGNIYSRLSNPTSDVLGQRLANVEGGAFGIPVASGMAACFYALINLASSGDNVA
                     YSNKIYGGTQTLISHTLKNFGIEAREFDIDDLDSLEKVIDQNTKAIFFESLSNPQIAI
                     ADIEKINQIAKKHKIVSICDNTVATPFLLQPFKHGVDVIVHSLSKYVSGQGTALGGAL
                     IERKDLNDLLKNNDRYKAFNTPDPSYHGLNLNTLDLPIFSIRVIITWLRDLGASLAPQ
                     NAWLLLQGLETLAVRIEKHSQNAEKVANFLNSHPDIKGVNYPTLASNAYHNLFKKYFD
                     KNFASGLLSFEAKDYEHARRICDKTQLFLLAANLGDSKSLIIHPASTTHSQLSEEELQ
                     KAGITKATIRLSIGLENSDDLIADLKQAIES"
     gene            complement(4377..6911)
                     /gene="flgE"
                     /locus_tag="SB815_001269"
     CDS             complement(4377..6911)
                     /gene="flgE"
                     /locus_tag="SB815_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG0906991.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTNYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDDQTIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTSSRNLYALDSVHGWNTKTQRAEDENDTGTTQ
                     FYTTSKNAVEVTEKGVDAGSLFNANGQGLNLREGQGIWVSYADAKFTTDKPANVNVFD
                     PNNHTNQNGSIFWGDKDNAVILDITLNGVNIQNANIRSLDEAIAYINTFTAPTDTRDG
                     TGVKAVKKADGSGIEFVNDNADGTTDNMKNINLTVNQANTAGERHAITWNAGNNNFTA
                     TSAKNNANSVWIPTAANVNGNAESIQIITAHKYIYSSTPVDIPPMYNPDGGPNFIANG
                     NQRPTDPASANYWDAIQGSLKNATERTFRTTEDLRELLQRDARYGVDYDGNGSSGYDA
                     NDINQAVKVVVTENGNFAISNANETSTIPANAGAGAGAATTNPKNMSFNITAYSNKQG
                     TVSTNDAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKHTLEVQFVK
                     QSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIIVGTARFNNDGSLASYTPRTINFSP
                     NNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAIRVDDKGNI
                     LGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIVVGEAGTGGRGEMKT
                     SALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ"
     gene            complement(7115..7597)
                     /gene="ruvC"
                     /locus_tag="SB815_001270"
     CDS             complement(7115..7597)
                     /gene="ruvC"
                     /locus_tag="SB815_001270"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEG0906992.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
BASE COUNT         2441 a         1360 c         1192 g         2610 t
ORIGIN      
        1 gaatctaaaa aagagcgaaa acacagagtg gatttcactc tttgtaaaaa gttcaaatca
       61 aaatcaatta tcaaattctt ggcctaaaaa attaccattg cgatcaaaat aaagctccat
      121 ataattgtta agcttgattt cataaccata cgcttcccaa tccatatcta cgataaaagc
      181 acctggatag agattttgaa tttgactggt aatatttttg gcaagccatt aaaatgatct
      241 tgtggtggca cagcatattg cggatataca ggatacgaag tagcaggcgc aggcgcaact
      301 gcagaggttt gggctgaaac attagaaatt gtatttgcac ttgcaagtat ggcagaacat
      361 gctaaaatga cagggataaa ttttactttc atttcttctt ccttaaaatg ttttagtaag
      421 tgcaagttta tgcttttttt gtgaagtgag cgtgaaagag aaataaaaat attttaaaaa
      481 tagctataaa tttaagatat caaataaatt tttaaacttt tgcactttca aaagctattt
      541 aaaactttaa aatgcaaaag ctttgtcttt attttggtac taccatatcg ctacgacatt
      601 ctatgactgt gtgtacattt ccgcgcggat taaaatcccc tactacttta atccattttg
      661 gcttgagttt gtcttttaga gtattataaa tttcattgat acttgcttca tgtgaaacat
      721 ttctatacat aaaagtattg atataaagtt ttatcgcttt aagctcaacc acaaatttat
      781 caggcatata ctcaagataa atcgttgcaa aatcaggata acctgaacgc ggacaacaac
      841 acataaattc aggcaaggtg attttaatga tatagtcatt tttagcatca tttggccaaa
      901 tttccatatt ttctacatca aattctttaa tttctttttc accataacgc atgagctttc
      961 cttattgaaa atttttagaa aattatataa aaaattactt ttagagcaat tgaaaaataa
     1021 acatttttag caaattgcat aaaaaagaca aatattatat taaataaagc tttttatact
     1081 agaataaggc aaatctttca aaaggaaaaa aatgaaaaaa tcaattgcaa ttataggcgg
     1141 tagcatcgca ggacttagcg cggctttatt tttcgcttca gctaaaaatg aagaacttga
     1201 ctttgatatc actgtttttg atgagggtaa agcagattta aaagcagcag caatttacaa
     1261 tgttcctttt ttcccaaaag gtgcaaaagc agatgaaatt tacactcaca taaaagcaca
     1321 aattgcttct atgctcgaag taaaatacat cgattcaaaa gtagtaagca taagcggaga
     1381 aaaaggagat tttactgtta atgatgagca aggcttgggt ataaaagcag attatatcat
     1441 cgtagcaaca ggggcaaaca aaagcgatat caaagaactt gaagattttg taataccgca
     1501 tgagcttatg ccaaaaccaa acaaattttg cttcaaacat cacgggagac agattatcaa
     1561 agaaggaatt tacgcagcag gacttgcttc aggtgttacg actatggtag cttgcgcgat
     1621 gggaagtgcc aatgaagcag cttgcgcgat tttaagcgat atcaaaggtg cagtaagcgt
     1681 atatcacgat acacctacta caagagttta aatcatcaaa gcacaaaagg tgtgctttga
     1741 tacacatcat aattgagcca atttgcaaaa atggtatttg catttgaacg ccaattgtat
     1801 tttatattgc cctttttatc ataataattt ttagcttttt gtatgaaatt atctcttaca
     1861 tattcttgat gtaaagtctc tttaaaatat tccaaatgcc ctaaaataaa aatattcttt
     1921 tcatctctta ataaagccga accgattttt ttatttctaa gcaaaatttt taatttccct
     1981 tgtttttgta gtgctaaaat ttgctcttca tccatgctag aatgtcttga atgaggcatt
     2041 aaaacctttt catctaaatt tgttaaaagc agatcaggcg aaactttatc atgcttatag
     2101 actccaaaaa ttttcttatc taaagagatt ttatccacac cataaaagta ttttaaagca
     2161 gccatggcac cccaacaaat atacatagaa cttgttacat tttgctttaa aaaatcaaaa
     2221 atttctagca attcttccca gtaagcaacc ttttcaaaat ccatttgttc cacaggagct
     2281 cccgtaacga tagcaccgtc aaatttatgt tttttaacct cttcaagacc cttgtaaaat
     2341 ttttccaaat gagtaaaagg agtattttta cccacatagc tagtcgtggc taaaagtgtg
     2401 atatttactt gcaaaggaga atttgcaagt aagcttagaa tttgattttc tgtttcaatt
     2461 ttttttggca taagattgac aatcaaaatt tcttgcggcc tgatatcttg atgctttgct
     2521 ctccttaatc ccatgataaa agcatgctct tttaaaagct cataagcggg tatattttct
     2581 ggaataatca gtggcatttt ttctccttta tttaataaac cttatttatg ataaagcatg
     2641 gtggaatttt tatctcattc actcaatgca aacacacttt taactttcta tagcttgttt
     2701 taaatccgct atcaaatcat cgctattttc aagtcctatg cttaagcgta tagtagcttt
     2761 cgtaatgcct gctttttgga gttcttcttc gcttagttgc gaatgagtag tagaagcagg
     2821 atggatgatc aaagacttgc tatcacccaa atttgcagca agtaagaaaa gttgagtttt
     2881 atcacaaatt cttctagcat gctcataatc tttagcttca aagcttaaaa gcccgctagc
     2941 aaaattttta tcaaaatatt ttttaaataa attatgataa gcattacttg ctaaagtagg
     3001 ataatttacg cccttgatat caggatgaga atttaaaaaa ttcgcaactt tttcagcatt
     3061 ttgactgtgt ttttctatac gcactgccaa ggtttcaagt ccttgtaaaa gtaaccaagc
     3121 attttgaggt gctaagctag ctcctagatc tctaagccaa gtgatgatga ctctaatact
     3181 aaaaatcggc aaatcaagtg tatttaaatt cagtccatga taacttggat caggagtgtt
     3241 aaaagcttta tatctatcgt tatttttaag caagtcgttt aaatcttttc tttctataag
     3301 tgctccaccc aaagcagtgc cttgaccgct tacatattta cttaaactat gcacgattac
     3361 atccacgcca tgtttaaaag gttggagtaa gaaaggagta gcaacggtat tatcacaaat
     3421 gctaacgatt ttatgttttt ttgctatttg gtttattttt tctatatcag ctatggcaat
     3481 ttgaggattt gaaagacttt caaaaaaaat cgcttttgtg ttttgatcta taactttttc
     3541 caagctatct aaatcatcga tatcaaattc cctagcttct atgccaaaat ttttaagtgt
     3601 gtgagaaatt aaagtttgag tcccaccata aattttgttc gaatacgcga cattatctcc
     3661 cgaacttgct aaattgataa gagcataaaa acaagctgcc ataccgctag caacaggaat
     3721 tccaaaagcc cctccttcga cattagcaag tctttgtcct aaaacatcgc ttgtaggatt
     3781 gctaagtctt gagtaaatat tgccaagttc ttgaagatta aaccttgctg cagcttgatc
     3841 caaattttca aaattatacg cagtgttttg atatataggc acactaatac ttctttgagt
     3901 atcaaaatta taagctccgt gtaatgctaa agtttcttta ttgaaattca ttttttatcc
     3961 ttattgtatc aatgaaaaaa tgttaaaaag ctttttatcg gctttaaact aggctatttg
     4021 aaaatgtaaa tttatagaat atgagtatat acgagtagat taagcgtgcc aagcacgcat
     4081 acagaaagaa gaaagcatta agttaaaact aatataagac attttttctc ctttctaaaa
     4141 aattattgat tattctatct ttaaaaaata aaattaaaat taaattttaa aaaatttata
     4201 tcacattgct gaaaatttta ttgcaaccca cccctagcaa gagtgagtta gcaataaatt
     4261 gaaggcagtt caagcctaag cctagtatta caagactacc aagataggct tgtaaagcaa
     4321 ggcttgctcc cttaaaggga gcaaaaaaca atattttata gaatactaag cttaaattat
     4381 tgtttaagct ggattagagt ttggagcatt tgatcactcg ttgaaatggt ttttgagttt
     4441 gcttgataac ctctttgaat gataataagc tctgttaaag aacgacttaa atccacattt
     4501 gacatttcaa gagctgaggt tttcatctca ccacgacctc ctgttcctgc ttcacctacc
     4561 acgatattac cactatttgc agtaacttta aaaagatttc caccaatttc ctcaagacct
     4621 gagttatttg ccactgaagc cattgcgatt tttgctacag caaaggtttt gccattagta
     4681 aattcaccta agatattacc tttatcatcc acacggatag catcaggttt taagttacct
     4741 gaagtataac catcagttgc ctgtcctgtt agagttgaag cagaatttga gcttacaagg
     4801 ccgtcattgc ttccacttgt tccaaaggaa agtttgattt gttgatttgg tgcggcacca
     4861 ttgtttggtg agaaatttat cgttcttggt gtataactag ctaaagagcc gtcattgtta
     4921 aatctagctg ttcctacgat gatattgttt ggtccttcgc ctgtagtgtt aatctctgca
     4981 ggttcaggta cacggatgat catttgccat tcattacccc catcttgagt ggtgctttgc
     5041 ttaacaaact gcacttctaa agtgtgtttt gaacctaagg aatcgtaaat ttcaagtcct
     5101 gctgaaaaag cagaaagctt aagttgttcg ctttctttga tctgacctcc gactgttaaa
     5161 actccgtcaa aagctttaaa aattttagta aaggcatcat tggtacttac agttccttgt
     5221 ttattactat aagcagttat attaaaactc atattttttg gatttgttgt agcagcacca
     5281 gcaccagcac cagcattagc tggtatagta gaagtttcat ttgcgttaga aatagcaaaa
     5341 ttaccatttt cagttaccac tacttttaca gcttgattga tatcattagc atcatatcct
     5401 gaacttccat ttccatcata gtctactcca tatctagcat ctctttgcaa aagctctctt
     5461 aaatcttctg tggttctaaa agttctttca gtagcatttt ttaaacttcc ttgtatagca
     5521 tcccaataat tagcagaagc aggatctgta ggtctttgat taccattagc aataaaattt
     5581 ggaccaccat ctggattata cataggagga atatcaactg gggtagagct ataaatatat
     5641 ttatgagccg ttattatttg tatgctctct gcgttaccat tcacattagc tgctgttgga
     5701 atccatacag agttagcatt gtttttagca cttgttgctg taaaattatt atttccggca
     5761 ttccaagtga ttgcatgtct ttcccctgca gtattagctt gattaacagt taaattaata
     5821 tttttcatat tgtcagtagt accatcggca ttatcgttga caaattctat acctgaacca
     5881 tctgcttttt ttacagcttt aactcctgtt ccatctcttg tatccgttgg tgcagtaaag
     5941 gtattgatat aagctatagc ttcatctaaa cttctaatat ttgcattttg tatatttaca
     6001 ccatttaagg taatatccaa aattacagca ttatctttat caccccaaaa aatagatcca
     6061 ttttgattag tatggttatt aggatcaaaa acattaacat tagctggctt atctgtagta
     6121 aattttgcat ccgcataaga cacccaaatt ccttgacctt ctcttaaatt taaaccctgt
     6181 ccattagcat taaaaagtga tcccgcatcc acaccctttt ccgtcacttc tacagcattc
     6241 ttagaagtcg tgtaaaactg agtagttcct gtatcatttt catcttctgc tctttgggtt
     6301 ttagtattcc atccatgaac agaatcaagt gcataaagat ttctacttga agttcctata
     6361 tttaaaccgc tatttaaatt cgctttgatg gctacttctg tggattttgc tgcagggata
     6421 tgcatacctg gatcgataaa aatattttgt ggagttcttg aactatctat agtttgatca
     6481 tcccagttga tattccaccc ttgaactaca aaacctgcat tattaacaaa atttccataa
     6541 gcatcaagtt taaaatcccc gctccttgta agatagtttg taagcccccc atcatcactc
     6601 accataaaaa aaccatcacc atttatagcc acatcagtgt ttttatctgt ggtttgaact
     6661 gaaccttgag aatgaattct agttgtagaa cttactgaaa cgccaagacc aatttgaagt
     6721 ggattagatc cacctcttcc atcagttgga gctgtagcga ttttcacagt ttggctaaac
     6781 atagtcccaa aatctgcacg ggagtattta aaaccagtgg tattaacatt tgaaatgtta
     6841 ttaccttcaa catccatcgc aacttgatgt gcttgtagtc cgcttacgcc agaccaaagt
     6901 gatctcatca tcttaaatcc tttataaaat attgctttaa aaaatttaac gctttggctt
     6961 taaaaaactt ttgcgtttat gtgaagttta caagcaagtt ctgttccaac ttttgaaatt
     7021 ttttatgaat tttttaaaaa tttatagaaa aaatttaaag gtattttggg agtttatgaa
     7081 gctttgagct tttgtgtaat aaaaattact aaaatcacac cctaactctt aaatttgctg
     7141 catgggttaa agccactgcg atagcatctg tgatatccaa aggcttgata tctttactaa
     7201 gtcctaaaag cctttttacc ataaaagcaa cttgttcttt agttgctttg gcttttcctg
     7261 taacggcttt ttttacttgt aagggagtgt attctgcaaa atctccatga atttgaagaa
     7321 tttttaaaga tagggctccg cgaaattgtg cgagttttaa aacggttttt ggattgtaag
     7381 caaaaaagat atcttctata gctacctcat caaaagaatg atttttaaaa atcaagtcca
     7441 aaccctcgca aagctctgtg atttgatact gtaaggtact tggctttatc tttataagtc
     7501 ctgcttctat gagaatgttt tttcctttgt cagcttctat gatagcataa ccacaatttc
     7561 tcgaacctgg atctatacct aaaattttca aattcatacc ttt
//
LOCUS       DARBAR010000076         7535 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.076, whole genome shotgun sequence.
ACCESSION   DARBAR010000076 DARBAR010000000
VERSION     DARBAR010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7535
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.076"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            66..1511
                     /locus_tag="SB815_001271"
     CDS             66..1511
                     /locus_tag="SB815_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HEG0906993.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            1515..1766
                     /locus_tag="SB815_001272"
     CDS             1515..1766
                     /locus_tag="SB815_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0906994.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNADIKKI"
     gene            1766..2485
                     /locus_tag="SB815_001273"
     CDS             1766..2485
                     /locus_tag="SB815_001273"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HEG0906995.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            2486..3292
                     /locus_tag="SB815_001274"
     CDS             2486..3292
                     /locus_tag="SB815_001274"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG0906996.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(3316..6333)
                     /gene="cmeF"
                     /locus_tag="SB815_001275"
     CDS             complement(3316..6333)
                     /gene="cmeF"
                     /locus_tag="SB815_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HEG0906997.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNQLRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSTTLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(6336..7076)
                     /gene="cmeE"
                     /locus_tag="SB815_001276"
     CDS             complement(6336..7076)
                     /gene="cmeE"
                     /locus_tag="SB815_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HEG0906998.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLSDDFFYKIDQNGTELKGKINLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            complement(7073..>7535)
                     /gene="cmeD"
                     /locus_tag="SB815_001277"
     CDS             complement(7073..>7535)
                     /gene="cmeD"
                     /locus_tag="SB815_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HEG0906999.1"
                     /translation="KVPAPFANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKE
                     RLNVQIANANARFSERKNKEELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQ
                     AGLVSYVEYLQALEVKFKAQSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
BASE COUNT         2627 a         1087 c         1206 g         2615 t
ORIGIN      
        1 tgctaagttt ttgtaaggaa aatttgctaa aattaacaat aaaaatataa caaaaaaggc
       61 aaattatgaa tcaaatccat aaaattctca tagcaaatag agctgaaata gctgttagag
      121 taatccgtgc ttgtagagat ttacatatta aaagtgttgc agtttttaca gagcctgatc
      181 gtgaatgttt gcatgtaaaa atcgcagatg aggcttatcg cataggaacg gatgctataa
      241 gaggatattt agatgttgct cgtattgtcg agattgctaa ggcttgtggt gctgatgcga
      301 ttcatcctgg ttatggattt ttaagtgaga attacgaatt tgctaaggct tgtgaagatg
      361 ctggaattat ttttataggt ccaaaatctg aagtaatcca taagatggga aataaaaata
      421 tcgctcgtaa gttaatggct aaaaatggca tacctattgt tccagggact gaaaaattaa
      481 attcctatag catggaagaa attaaaattt ttgctgagaa gattggttat cctgttattt
      541 taaaagcttc aggtggtgga ggtggacgcg gaattcgcgt tgttcataaa gaacaagatc
      601 ttgaaaatgc ctttgaatct tgcaaaagag aagctttaac atactttaat aatgatgaag
      661 tatttatgga aaaatatgta gttaatccca gacatataga atttcaaatt ttaggagata
      721 actacggaaa tattatccat ctttgtgaaa gggattgttc tattcaaaga agacatcaaa
      781 aggtaattga gatagcacct tgccctggaa tttcagataa tcttagaaaa accatgggtg
      841 ttacagctgt ggcagctgct aaggctgtag gttatacaaa tgctggaact atagagtttt
      901 tgcttgatga ttataatcgc ttttatttta tggaaatgaa tacaagaatt caagttgagc
      961 atccaattac tgaagaaatt acaggtattg atcttattgt aagacaaatt cgtattgcag
     1021 caggagaaat tttggactta gaacaaagcg atattaaacc taggggtttt gctattgaag
     1081 ctagaattac tgctgaaaat gtatggaaaa attttattcc aagtcctgga aaaataggag
     1141 aatactaccc agctcttgga ccatctgtta gggttgatag tcatatttat aaagactata
     1201 ctgtgccgcc ttattatgat tccatgcttg caaagcttat tattaaagca acaagttatg
     1261 atttagcggt taataaactt gagcgtgctt tgaaggaatt tgtgattgat gatattagaa
     1321 caacaatacc atttttaatt gccattacaa aaacaagaga atttagaagg gggtatttag
     1381 acacctcttt catagaaaca catatgcaag aattattaga aaaaacagaa gatcgtcatc
     1441 aagaaaataa agaagaagtt atagctgcaa tagctgctac gcttaaaaaa atacgagaaa
     1501 gtagggaata atagatggat tttttagaca gtcttaaaag tattaaaaaa gaaatgcaag
     1561 ctaacaccaa tacttcaaaa ttagcgaaga aatcaagcaa gagtggtgca agtgtaaaaa
     1621 atttagaaaa actagctaaa gatattcgcg aaaaaaatca agaaacaaac atagataagg
     1681 aaatgcaaga aattttctta aagcaagaaa aactacagga tgaattttcc gaatttatca
     1741 aaaatgcaga tattaagaaa atttaatgct tgagattggt ttttgtactc ttgaagatca
     1801 gtgtccttac ttaaaggata aacgttcaag aatagagtat aaatacattg aaaattgccc
     1861 taaagaaatc aataatgagc taataaaacg aggttggcgt cgttttggta ggtatttttc
     1921 acgccctatt tgtaaagatt gtgatgaatg tttaagtctt agaattttag ttaatgaata
     1981 taatttttca agaagtgaaa gaagggttgt aaataaaaat attaacacca aagttatact
     2041 tagaacaccc aatttaagca atgaacattt gtttttatat gataaatacc atcgttttat
     2101 ggaagaaaaa aagaactgga agcgttatga tttaagcttt aaacagtatt ataatcttta
     2161 tgtcgatggt tttatgaatt ttggatatga gcttgcattt tatatagaag ataagctcgt
     2221 ttgtgttgat ttgattgata ttttagagga tggaatttca agcatttatt gtttttatga
     2281 tcctgatttt tcgtattttt ctttgggtaa attttctttg ctcaatgaaa tacaaatagc
     2341 taaaaaaatg aacttagatt atatttatct tgggtatttt gtaaaaaagt gtcaatcttt
     2401 atcttataaa gccgattata cacctaatga aattttaaaa ggcactaaag agctttttga
     2461 aaatgaggtt ttatgggaga aatagatgca aatcgtgcaa actttagaaa ctatcaatgt
     2521 taatacagat gatattagcg tatttcagta ttttaaagac ttgattacca aaaatttcac
     2581 aaaggtcata ggacgaaaaa ataaaatttt ttcttttttt gaagaaaatg aaattccaca
     2641 gcgccgttat ttcttaaaag ttttagatca aaaatatcgt aaaagcacaa atgaaggtat
     2701 agagaattta caagatgctc attttaaaac ttttagatta atttttgagc aaaataatat
     2761 gcttaagcct atgttgttta tcaagattga ttttgttgcg ggtagaattt tgatgaagtt
     2821 aagctctaat gaaaaattat ttattactta tataagaaat tattttcaag atcataatat
     2881 agaatataat gaaatgacaa atattctaat tttagaatat aaaaacgaga atacccttga
     2941 actttttgaa gcttttgcag atgagagcga gcatttaaaa tattgcgtga attttgaagt
     3001 tgaccgcgaa gagtataaaa aatttcgcca aaatattcac aataaagaaa atatgaaatg
     3061 gaaatttaat gctttagcta agctttttag taattatttt aatactttag aatgcactcc
     3121 gcaaaatgat cttagtgaaa tcagacaaaa atatttgatt ttggtaaaac tttatcatcc
     3181 tgattttcat caaggaaaaa gtgcaataga aaaagcttac gcaagagaac agtttgaaaa
     3241 aatacaaatc gcctatgata acttaaaagc actttataag aataatactt aaaaaaatta
     3301 aattaatcat tttggttaat ttaatttttc tctctcataa atttttctta atttgctatc
     3361 tagtttaaaa caaaatttaa aaagtgcagg tactacgagt aaggtaagca aagtcgaact
     3421 tataagtcca aagataatgg ctattgccat aggagaatta gcttcatagc ccgcacccct
     3481 tgaaagagca agtgggagca tagcaaaaat catagcaaaa gttgtcatca atatagccct
     3541 taagcgcgat tttccagcga ttaaaagagc tttatcggga tctaaacctt catggcattt
     3601 tttattagct acatctacga gtaaaatagc atttttcccc accataccaa aaagtaagat
     3661 gatggcaata agtacaaaaa gtgaaaaatt atgccctgtg ataaaaagcc ctatagaagc
     3721 tccgccaaag gctaaaggca tggttatcat gatgattaaa ggcagaataa aactttcata
     3781 aagtgcggct aaaacaagat aaattaaaac aaaagcaagt gctactgcca tagcaaaacc
     3841 ttgcacggtt tcacctaaaa gattgataaa gcctgaaaaa gcatagctaa gacttggatt
     3901 gttatttaaa attttatcca tattatctag taaaagtttt tgcaccgctc ctaaggaaag
     3961 atcattcact ccagctgtga ttttcacaga gcggttttta ttgtaacgat tgatagtttt
     4021 taaatcttta ctgtatataa aatccaccac gcttgaaagt tctaaattta taccttggtt
     4081 gtttttaatg ctaatgcgct ttaaagcttc tatgtctttt ttaaattctg gagcaaaact
     4141 taggataata tcatcttttg aattgcctct atccatgctt cctacgctaa gttgcgagaa
     4201 agaataccct aaaaccccag cgatatattg aggattgaca tctaaaagtt tggctttttc
     4261 tttgttgatg tgtaaggcta cttcatcttt tgtagcatta gcattatcac ttatatctac
     4321 aatgcgtgca ttagtgccta aaatttcttt tgcctgagaa gcagcttctt tcagagtgtt
     4381 taaatcatct cctaagatta aaaattgcac gggatcatca atgcctgcac cctctatctt
     4441 tggaagttct aaaattttga tttttaaact ttcatcttga aatttttgac gatataaact
     4501 tactatggca ctttgtctta aatttctttc gtctaaattt ttaagtttaa cataaatttt
     4561 agcctttgta gcatctttgg catcatcata gcctacaagt aaaaaagcgt atttgacatt
     4621 gctatcattt ttgatttttt caagcaaatt taaacttttt tctttcatgg cttctaaact
     4681 taaatccttt ttgctttcaa gcaaaacttg aatttcacta tcatcttcca taggtaaaaa
     4741 atcaagccct atgcgagtgg ctaaagcaaa agaaagccct ataaaaacaa gagtggctag
     4801 gataaatttt actttatttt gtaaaatttt atagagtaaa ttttcatact tttgctctat
     4861 tttttcaaaa aaagcttctg ttttttcata aaacttgttt tcttttggat ttaaaaatct
     4921 tgccccaata ctaggtatta aaaatacaga aaccaaaaag cttataacta tcccacttgc
     4981 aacgcttatg cctaaggcat tgaaaaaaag ccctgatata gagttcatat aagaaatagg
     5041 gataaaaaca caaagtaaaa ctatacttat gcttaaaacg ctaaaaccta tttcattgat
     5101 acctaaaaaa gcagcttgta aaggcggata agtttttagt tttttagcaa tattttcaat
     5161 cactactata gcatcatcga taaaaattcc tatgcttaag gttaaagcta taaaagttaa
     5221 gcggtttaaa tcatagccta aaagatcgat aataaaaaaa gttgaaatga tagaagtagg
     5281 tatagctatg caagcaatga gagttgtact taaatttctt aaaaataaaa acacgataac
     5341 aagggttaga aaaatcccca aaaccatatc aaaaatcact tgagaaaggt gcttgtggat
     5401 atttaagctt ttatcataaa gcatattaat gcttatatct tttggaattt gtttttctaa
     5461 aataggcaag gcatttttga catttttaat catttcaagg gtgttataat ttgtgatttt
     5521 tccgagttct aaaagcaccc cttctttacc ttcgtataaa gcactttgtt tttcatcttc
     5581 ataaaggctt gaaatattag caatatcact taaaaatact cctgttttta tgcgaagatt
     5641 gctaagttct tctaaatttg tggcttcaaa atagcctttg atgatatagt tatcttgatt
     5701 gttgttaagt tcgcctaggg cttgtttaaa attttgactt ttgatgatat ttgctacatc
     5761 aagggcgtta agattgtatt ttctaagttg gtttggtttt aattctatgc gaatttgggg
     5821 ttctaaaaac cccttagctt cgattttacc tactccttca actctttgca aaaaaggttt
     5881 tattttgtca ttgatttcac gcatgagttg taatttatct ttagaatata gaaaaagtga
     5941 aatagcagaa ccagaatctg aactgatttt ttcaatttca ggcttagaag gtaggcttaa
     6001 agttcctatt ttatcacgca catcattggc agctacttca agatttttac ccagtttaaa
     6061 ctcgactaca cttacactaa aattatcata tgcagctgag gttatggtct ttactccatc
     6121 gatttcactt aaagcatttt ctatttcttt agtgactttt gattctacga aatttaaatc
     6181 cccatttatc ttgcttgtga tttttataag aggtatggaa acattaggaa ataaatttac
     6241 actcatgcta aaagcagaga ttagcccaaa aatcataaga gctaagaaaa acattagcac
     6301 ggtaataggt cggtttatag ctagtttaaa catttttaat ctttagtgat gattctacct
     6361 tcaccaaaaa gccctggtgt tagatttgtg gtttgcactt cagcataaat ttttcttgtt
     6421 tttacttcta tacttggata aataaggttg atttttcctt tcaattctgt accattttga
     6481 tcgattttat aaaagaaatc atcgcttaat ctaactttat ctttatattt ttcatcaaaa
     6541 cttaaaatca gtttgctttg tggataggaa aaaatttcta ttaaaggttg agctactcct
     6601 cctactcctt cgcccacttg tataaatttg tttgcgataa tagcatcata aggtgcgcgt
     6661 aattcttttt ttgccatgat atttttataa taagctatat tgatttttgc tttgtttaaa
     6721 tttaaattag cagcatcaaa cttagctttc atatcttcat agctttgttt gtctataaca
     6781 ttttctacag ctttgatttt ttgcatccta cttttggtat tttcgtattc tacaagggca
     6841 agttgataag aattttgagc attttgaaga gctatttttt cactttcttg atcaagagca
     6901 agtaaaagtt ctcctttgct gactttttgt ccaatttcta caggaatttt ttgaaccaaa
     6961 cctatgcttt caagggcaag tttgctttgt tttgatgctt ctacattgaa acttgcgtaa
     7021 atttcttcgc caaaggcgca attaaaaaca agaagtaaaa atagaatttt tttcattctt
     7081 taacctttga attaagatct atacccgcat taaaataata atttgcttta gtaatttcaa
     7141 attcattttt agcaagctct aaatcgcttt gtgctttaaa tttaacctct aaagcttgaa
     7201 gatattctac ataagaaaca agtcctgctt ggtatttttt atctacactt tcaaaagcta
     7261 aatttgcagc atttaagcta agattaagag ctaaaatttg ttcttgtaaa acttttaaac
     7321 ttttgtctaa ataatttaat tcttctttat tttttctctc gctaaatctt gcatttgcat
     7381 tggctatttg aacatttaaa cgctcttttt caacttcttt agcccttgca ttgaaatcaa
     7441 aaattttcca ttccatacct aaaataaatt gattaccttg agaatatttt tctaagaatt
     7501 gatccgctaa atttgcaaaa ggagctggaa ctttt
//
LOCUS       DARBAR010000077         7533 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.077, whole genome shotgun sequence.
ACCESSION   DARBAR010000077 DARBAR010000000
VERSION     DARBAR010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7533
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.077"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..262
                     /locus_tag="SB815_001278"
     CDS             <1..262
                     /locus_tag="SB815_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG0907000.1"
                     /translation="KWSKKTGLFYTHLSIKNMKTRWGSCNHNKAYINLNLKLIQKSLR
                     AIEYVILHEISHLKFPNHSKEFYTFIEHFMSDFRQREKEFLS"
     gene            304..1824
                     /locus_tag="SB815_001279"
     CDS             304..1824
                     /locus_tag="SB815_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907001.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYILSKEENTYHFSIDA
                     DEENLKTFCDSLNFMSHSVFLKKFDVKAGQGFNPCIPEDKEFSRFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNHNL
                     DFSDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKEDKNMARISYLVSRYKEKAFILELSKDYEDILLINKELNLLKLCL
                     PKHSKELYEEIKKDEIGARLLENFNKEFPLLDENFKLQNNFYSLLGLLGRVLNLGRNL
                     QESASELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSANIAYGA
                     VESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDVPLRV"
     gene            1805..3994
                     /gene="hypF"
                     /locus_tag="SB815_001280"
     CDS             1805..3994
                     /gene="hypF"
                     /locus_tag="SB815_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEG0907002.1"
                     /translation="MCHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPML
                     SDFAFCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLCKKLDKVFDFYLDYDREIINASDDSIAQVVNGETMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKDF
                     LAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLNLEK"
     gene            4072..4815
                     /gene="hypB"
                     /locus_tag="SB815_001281"
     CDS             4072..4815
                     /gene="hypB"
                     /locus_tag="SB815_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEG0907003.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKVDLAHHFDFDIKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            4815..5096
                     /locus_tag="SB815_001282"
     CDS             4815..5096
                     /locus_tag="SB815_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEG0907004.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            5080..6171
                     /gene="hypD"
                     /locus_tag="SB815_001283"
     CDS             5080..6171
                     /gene="hypD"
                     /locus_tag="SB815_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEG0907005.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLKIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPIEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            6168..7142
                     /gene="hypE"
                     /locus_tag="SB815_001284"
     CDS             6168..7142
                     /gene="hypE"
                     /locus_tag="SB815_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEG0907006.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEADIKSDCKALNKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDELKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            7142..7486
                     /gene="hypA"
                     /locus_tag="SB815_001285"
     CDS             7142..7486
                     /gene="hypA"
                     /locus_tag="SB815_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEG0907007.1"
                     /translation="MHELSIVESLIELCEENALNNKACNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKIIQ
                     GEDLHLMRLVMK"
BASE COUNT         2665 a          904 c         1443 g         2521 t
ORIGIN      
        1 aaaatggagt aaaaaaacag gcttatttta cacgcattta agcattaaaa atatgaaaac
       61 acgttggggt tcttgcaatc acaataaagc ttatattaat ttaaatttaa aactcattca
      121 aaaaagttta agagctattg aatatgtgat tttgcatgaa attagccatt taaaatttcc
      181 caatcatagc aaagaatttt atacttttat agagcatttt atgagtgatt ttaggcaaag
      241 agagaaagaa tttttaagtt aaaaatgtta tatttatagt ttatttttca aaaaaggcat
      301 aatatgactt tggattttga ttttatttat aatgcagata atgatatttt tgaatattta
      361 ttgcgttttt atgcgaaaaa ttacaattat atccttagta aagaagaaaa tacttatcat
      421 ttttctatcg atgcagatga agaaaattta aagacttttt gcgattcttt gaatttcatg
      481 agtcatagcg tttttttgaa aaaatttgat gtaaaagcgg ggcagggttt taacccttgt
      541 ataccagaag ataaagaatt ttcaagattt tcttatatta ctcatttaaa ttctaatgct
      601 tatcaagaaa aaaaactttt aaacaaaaac gaatggggcg tgttttgtga gtgtgaattt
      661 tcaagcaatt tatcagaatt tgaaaaaatc aatgaagaaa atttcaatac ttttttaaat
      721 cttgcctttg atttgttaag tcaagaaaaa aagatttatt taaaagataa aaacggcatt
      781 tatgaatttt ctttgtttaa gaacgaattt ataggagatt ttttacttcc ttgtgatatt
      841 aaagctataa attcagtttt tgtttgttca aatgaaaatt taaaacttct tgcaagttta
      901 gaaaaacctt tgatgaagct aaggcttaat gctatgttta gaaaaaatca caatcttgat
      961 tttagtgatt ttaaaatcag acttgctaga gatttgtttt gctttgcttt aggtttgaaa
     1021 ctttttgaaa atgagtataa atttttaagc gtaaaaaaga tagaagaata tcaaaaagat
     1081 ttttatatca gtgctttaga tgagcaagtg gtggttttgg aaggctttga atttatcaat
     1141 gctaaggcaa gagagcttat tttttctaaa gaagataaaa atatggcaag aatttcttat
     1201 cttgtaagcc gttataaaga aaaagctttt attttagagc taagtaagga ttatgaagat
     1261 attttgctta tcaataaaga gcttaattta cttaaacttt gcttaccaaa acacagcaaa
     1321 gaactttatg aagagattaa aaaagatgaa attggtgcaa ggcttttaga aaattttaac
     1381 aaggaatttc ctcttttaga tgaaaatttt aagcttcaaa acaattttta ttccttgctt
     1441 ggcttgctgg gtagagtgct aaatttgggt agaaatttac aagagagtgc tagtgagctt
     1501 ttaaaaatcg ctgatgagtc aaaaatgcct cgtggagtaa agattgatta tcgtttgaaa
     1561 gaagataaaa gttttgatta tacaaggact ttaagatctg ccatgagttt tatgttagca
     1621 ggtgtagata gtgctaatat cgcttatgga gcggttgaga gtttggctta tttcttgcgt
     1681 gatacttatg atgaattaag agagaaaaag caaagtgatt tagcacttat aagcggctct
     1741 ttgtttgaac ataaatcttt acttaaaaat actttaaaac atcttaaaaa ttgtcagtta
     1801 agcgatgtgc cacttagggt ataagatcaa aatttcaggt ctagttcaag gggtgggttt
     1861 tcgcccctta gtttatgaac tagctttgaa atcaaagctt tttggagaag taagaaatga
     1921 tggttttggg atagaaatca tccttgcttg cactcaaaaa gaatgtgaaa atttcataga
     1981 aaatttaaaa aatcatcttc cacctttagc aagaatagat cagcttataa tcacgcaaat
     2041 ttcaatttca aactatgaga attttagcat tactccttct ttagagaata caaaaagcac
     2101 gcctatgtta agcgattttg cgttttgtaa ggagtgtaaa aaagaatttt ttgatgaaaa
     2161 aaatccacgc tttttatatc cctttatcac ttgcacacat tgtgggccac gctttagtat
     2221 tataaaaagt cttccttatg atagatttaa tacctctatg caagaattat tgatgtgtga
     2281 gttttgtaaa agcgaatacg aagatcctaa aaataggcgt tttcatgccc agcctattag
     2341 ttgtcctaaa tgcaaaatca atgtttttct taaaaatcca aagggtgaaa ttttagccaa
     2401 agatcaagaa gcttttatac aaagtgcgaa gtttttaaag gaaggtaaaa ttttagccat
     2461 taaaggcatg ggcggttttc atctcatgtg tgatgcgttt aatgaagaag ctttaaaaac
     2521 tctaagactt agaaaaaatc gccccaaaaa accctttgct ttgatgtgta aagatttaca
     2581 aagtgctaaa gaacttgcct ttatagatga aaaagaagaa gctttgcttg gtggggtttt
     2641 ggctcctatt gtgattttaa aggcaaaaaa agccttttct ttaatcgctc ctgatgttga
     2701 taaaatcggc attatgttag cttatacacc tttacatctt ttgctttttg agtattttaa
     2761 aggaagcctt gtagcaacga gtgcaaattt aagcggagaa agtattatta aagatgagtt
     2821 taatttgtgt aaaaaacttg ataaagtttt tgatttttat ttggattatg atagggaaat
     2881 tatcaatgca agtgatgaca gcatagctca agtggtaaat ggtgaaacta tgtttttgcg
     2941 tacttcaagg ggtttaaatc ctttttattt ggaaagaaat tttaataaaa aaggcacttt
     3001 tttagctttg ggtgcggaac ttaaaaatga atttgtgatt ttttatgaaa ataaactttt
     3061 aatttctcct tatatagggg atttgaaaag tcttgatgtg catgagagat tttttaaact
     3121 tttagaattt tttaaacaaa attatgattt gaaatttgat gcgattttgt gcgataaaca
     3181 cccgcatttt agctatgcaa aagaatttga agaaaggatt aaaatttctc atcattatgc
     3241 gcatttttgt gcggcttatt ttgaatacga agaaaatttt gcaaaagatg aaaaggcttt
     3301 agcttttatt tgtgatggaa caggttatgg cgaagatggt aaaatttggg gtggagaagt
     3361 ttttgtagga aatttaaaag aatatgaaag aattgcacat tttgaaaatt tcactcttat
     3421 aaatagtgat attaaaaata tacaaaattt agccttaagt cttatttttc attatgattt
     3481 agaagataag gctaaggatt ttttagcaaa aattccaaaa attaaactta aaaatcttaa
     3541 aaaaatttat tctcattcta acttacaaac aagttcttta ggacgcatta tcgatgcttt
     3601 tggaagtatt gtttttaact tagaaaaaag ttcttatgaa gctcaagttg gcttaatgtg
     3661 tgaagctttt tatgataaaa atcttgattt ttcttataag ctttttgtag aaaaagggca
     3721 ggttaatttt aaaaatttaa tcctaggggc tttgcaagat gaaaaaacta aggcgattac
     3781 aggtatgttt aatgccttgg caaattttat catagatttt agcaaagatt atgatttaaa
     3841 agtgctttta agcggagggg tttttcaaaa caaaaccttg cttgaaattt taaaagctaa
     3901 aaattttgat ttttttatac ctttaaagta cccttgtaat gatagctcca tagccttagg
     3961 acaaatggtg cattttttaa atttagaaaa ataaagcaaa tattctaaaa actcataatt
     4021 ttttaatgct tttaaggtta aaatgaaaca aaaaatatag aaggaaagaa aatgtgtaaa
     4081 gattgcggct gctctataaa ttcaagccat acgcatggtc atcatcacga ccaccatcat
     4141 gaaaatccaa gtttaaaaga aagcaaaacc atagaagtga tttctaaaat tttaagcaaa
     4201 aatgatgaag aagctaagca caatagagcg cattttaatg aagctaacac gctttgtatt
     4261 aatttaatga gttctccagg tagtggaaaa accacgcttt tagaaagcac gattaaggct
     4321 ttgaaaaatg aacttaaaat tgctgtgatt gaaggggatt tagaaaccaa taatgacgct
     4381 ctaagggtaa aaaatgccgg agctttggcg tatcaaatca ctacaggaca aagctgtcat
     4441 ttggacgctt ttatggtgca tgaggctttg catcatttag ccattgatga tgtggatttg
     4501 ctttttatag aaaatgttgg aaatttggtt tgtcctgcaa gttatgattt aggagagcat
     4561 ttaaatgtgg ttttgctttc tgttaccgaa ggaagcgata aaccgcaaaa atatcctgtg
     4621 atgtttaaaa aggctgatat agttttaatc acaaaggtag atttggccca tcattttgat
     4681 ttcgatatta aagaggcgac taggttgatt aaagaattaa atcctagagc agatattatc
     4741 acccttgatg caaaaaatgg caccaatatg gagctttggt ataaggtgct taaacttaaa
     4801 aaggagcttt tttaatgtgt ttgtctatac cttctgaaat tttagaaatc gatgagttaa
     4861 acaatgcttt agtacaaact ttaggcgtga aaagaaaagt taatttggat ttgattgatg
     4921 aacctttaaa acaaggcgat tatgtattaa tccatgtagg cgttgctatg gaaaaaatcg
     4981 acaaagaagc tgcactagaa agcattaaaa cctatcaaga aatagtagaa aaaatgaata
     5041 gtggagagat aaaaagtgat gagggagatt tgggtttaaa tgaatttcat cgatgaattt
     5101 agagataaag aaagcatttt agctttaaaa aaactcatag aacaagaact taaaaatcct
     5161 atcaatatca tggaaatttg cggtgggcat acgcatagta tcatgaaata tgctttgcct
     5221 tctattttgc caaaggaaat taactttatc catgggccag gatgtcctgt ttgtgttatg
     5281 ccaagagttc gcattgatac agctatcaag ttagcctcca tgaaagatac gattttttgt
     5341 actttagggg atcttttaag ggtgcctgga agtgaaattt ctttactgga tttaagagct
     5401 aaaggggctg atgttagagc gctttattct ccgcttgagg ttttaaaaat cgctaagcaa
     5461 aatttaaaca aaaatatcat cttttttgct ataggttttg aaaccactac gcctatgagt
     5521 gctttacttc ttcaaaaggt tatagaagaa aaaataaata atgtcttttt tcatatcaat
     5581 catatcacag ttccagcacc catagaagcg atcatgaatg atgaaaatgt aaaaatcaat
     5641 gcttttttag gtccttctca tgtgagtgtg ataacaggtt atggtattta tgagccttta
     5701 gcagcaaaat ttaaaacccc tatagcggtg agtggttttg agccagttga tattttagaa
     5761 agtgtgttaa atatcataaa acaaagcaat gaaggcactt ttaaagtgta taatcaatac
     5821 aaaagagccg taagcaaaga aggcaatgtt aaagcacaaa atttagtaaa aaaatacttt
     5881 agggtgtgtg attttgaatt ccgtggctta ggacttatta aagatggagg cttggagtta
     5941 aaagaagaat ttagcgctta cgatgcgagt aaaaaatttg attgtacggt gcaaagtaaa
     6001 aatgaaagca aagcctgtat ttgtgggcaa attttaagag gtttggccaa gccttatgat
     6061 tgtaaggttt ttggtaaggc ttgtacgcca agaagtccta taggaagttg tatggtttct
     6121 ggcgagggtg cttgtgcggc gtattataaa tactcaaagg tgaatgcatg aaaaatattt
     6181 ccttagccca cggaggtggc ggagaagaga tgaatgagct tttaactaag ctttttaaga
     6241 tctttgataa tgaaatttta aacgcaaata atgatgcggc gattttggga aatttggctt
     6301 taagcacgga ttcttttgtt ttaagtccga tttttttaga tgaagaggtt aatataggca
     6361 aactttgtgt ttgtggttct attaacgatg ttttgatggt gggtgctaag ccaaaatatc
     6421 taagcttagg gcttatctta gaagaaggtt ttgagctaga aaaattagaa cgtattttaa
     6481 aaagcattaa agaagaatgt gaaaaatgtg gagttatgtt agtttgtggc gatactaaag
     6541 ttgttcctaa gggtaaagca gatgaaattt atatcaacac tacagcctta ggtgaaatta
     6601 tttctaaaaa agaaagtaaa aatatcaaag cagggcttag catacttctt tcaggcgata
     6661 taggaaggca tggagctagt gttttaatca aaagaaatga gctagaagct gatattaaaa
     6721 gtgattgcaa ggctttgaat aaagaggttt tagagctttt agaaaaagat ataaaggttg
     6781 tggccatgag agatgctact cgcggggggc ttagtgcggt tttaaatgag tgggcaaagc
     6841 aaagtggaaa tgatcttttg atctttgaag aaaaaatcat cgttcaagat gaggttttag
     6901 gactttgcga gctttttggt tacgaagcgt atgagcttgc aaatgaaggc acttttatac
     6961 tttgtgtgga aaaagaagat gagttaaaag ccttggaaat tctaaaaaaa tacaatgtaa
     7021 atgcgagtat tataggagaa gttttagaag agaaaaaagc acgcgtgatc ttacaaaacg
     7081 cttatggagc aaaacgcttt ttagaaagtc ctaaaggcga acttttacca agaatttgct
     7141 aatgcacgaa ttaagtatag tagaatcttt aatcgaactt tgcgaagaaa atgccttaaa
     7201 caataaggct tgtaatgtgc aagaaattta tgtaaaaatc gggcgtttaa gcggtataga
     7261 agtggatctt tttaagcgtt gttttgaaac ttttaaagaa aactcaaata tttgcaaaaa
     7321 tgctaaactt tttatagagc ttgctccgct tgaaatttta tgcttaaaat gcgatcaaac
     7381 aagtatttta gaagaaaatg tttttaagtg tcctaaatgt caaagtatag aatataaaat
     7441 catacaaggt gaggacttac atcttatgcg acttgtgatg aaataatata tttggcgttt
     7501 ttgttacaat agtaaatatt ttatcgatat tat
//
LOCUS       DARBAR010000078         7452 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.078, whole genome shotgun sequence.
ACCESSION   DARBAR010000078 DARBAR010000000
VERSION     DARBAR010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7452
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.078"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..180)
                     /locus_tag="SB815_001286"
     CDS             complement(<1..180)
                     /locus_tag="SB815_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEG0907008.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHKILDENA
                     LELEKIFSPFSLKNLL"
     gene            241..1230
                     /locus_tag="SB815_001287"
     CDS             241..1230
                     /locus_tag="SB815_001287"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEG0907009.1"
                     /translation="MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE"
     gene            complement(1251..2444)
                     /gene="dcuC"
                     /locus_tag="SB815_001288"
                     /pseudo
     CDS             complement(1251..2444)
                     /gene="dcuC"
                     /locus_tag="SB815_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
     gene            2900..5854
                     /gene="cas9"
                     /locus_tag="SB815_001289"
     CDS             2900..5854
                     /gene="cas9"
                     /locus_tag="SB815_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HEG0907010.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQ
                     SVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLN
                     NLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGDHSLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNYSQRAKIEKEQNENYKAKKDA
                     ELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNY
                     KDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK
                     SGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELY
                     AKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNSDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTS
                     STVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVT
                     KAEFRQREDFKK"
     gene            5851..6741
                     /gene="cas1"
                     /locus_tag="SB815_001290"
     CDS             5851..6741
                     /gene="cas1"
                     /locus_tag="SB815_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEG0907011.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQVSISSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFILKKYNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            6734..7165
                     /gene="cas2"
                     /locus_tag="SB815_001291"
     CDS             6734..7165
                     /gene="cas2"
                     /locus_tag="SB815_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEG0907012.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQLNKKQEKYHQQNLFEF"
BASE COUNT         2856 a          960 c         1286 g         2350 t
ORIGIN      
        1 gagtaaattt tttaaactaa agggagaaaa aatcttttca agttctaaag cattttcatc
       61 taaaatttta tgagcgattt tgtctgcgct aatgctttta aagcctaaag aattcgctat
      121 ttctataaaa gtgcttttac cacaagcaat tgaagcggtt acaaaaaaag catttttcat
      181 cttatgcctt attaaaactt ttttcgttaa aatacctttt tagttcttaa aggaaaataa
      241 atgaaaattt catatgaaga tgcaggcgta agtatagata atggaaatac ctttgtagag
      301 gctataaaac ctttggttaa agaaactttt aatgataatg ttgtaggtgg aattggttct
      361 tttgctggtg cttttagaat gccaagtggt tttaaaaagc ctgtgatttt aggtgcaaca
      421 gatggggttg gtaccaagct tcgcttggca attgatgcta aaaaatatga tactataggg
      481 caagatttag tagcaatgtg cgtgaatgat ttgatttgta attttgctac gcctttgttt
      541 ttcctagatt attatgctac agccaagctc gaagtagaag tagcaaaggc tgttgtatca
      601 ggcattgcca agggatgtaa gatggcaaat tgtgcattaa ttggcggaga aactgctgaa
      661 atgcctggaa tgtatgcaaa agatgatttt gatcttgcgg gttttgcagt gggtatggct
      721 gaagaagatg agattgatag aagtaaattt gttaaaaatg gtgatatttt attggcactt
      781 tctagttcag gacttcattc aaatggttat tctttagcta gaaaagtact ttttgaaagt
      841 ttaaaattaa aatttgatga caagatagag ggtaaaaatt taattgatat tttgttagaa
      901 cctacaagga tttatgtgcg tgattttctt acactaaagc cttatatcag tgctctagca
      961 catattacag ggggtggttt agtagaaaat ttaccacgcg ttttacctcg tggtatgggt
     1021 gcaactatac gcaaacatca tcttaaaact cctgaaattt tttatactat aggacaggct
     1081 gtagaagaaa gcgaaatgta tagaagcttt aacatgggag tgggtttagt aatggttgta
     1141 gatccttcta atgtaagtaa gattttagaa aattcagatg cctttattat cggcgaaatt
     1201 tgcattaatg aaggtattgt tttagaatga aaataaagcg ttaatacgct ttatttttgt
     1261 attttaagtt ctatttttgt agtgttttgt tcttttggca aaggattggt ttgtgctaga
     1321 taaaaggcta caagtacatt tacaagcata gcgataagta aaagaggagt ggttcgtttt
     1381 ataatatcca ttggagctac ttttgcaaat ccagctaaag ctatgattcc gcctgctatt
     1441 ggtgaagctg cacgacctaa acaagatgca atttctatag gtaaaactag agtaataggt
     1501 gcaacgccta attttgtagc tatatcagga gctagttttc caaaagtatt aaaagcggca
     1561 attccacttc ccataatcac tgtggcaaaa taaactaaaa agcttaaaat agctatactc
     1621 aaaagaattc caaaccatgc aaaatttcct gttccaagat ttgaaaccgc gttagcaagg
     1681 atattaactc caccaagtgc tttaatgcct tcagcaaata ctccagcggc gatgattatg
     1741 cttacgactg agataaaaat ttcagccata gcttttaaaa tcaccatcat atcttcgcct
     1801 aattttctag catttctgtg tcttgcaaat tcaacaagaa aaactaaaga aatgcttaca
     1861 aaatttgctg ttacaacatc gagcttgata gtaaaaaaat acgctataaa taaaaataca
     1921 acaggtaacc aaggaaagag tatgtaaaaa agtagggcat ttaggatcaa tgatttgcgg
     1981 aatttcaact tcatcattta aaacaccttt ttctttatct cttttatcaa tccaagtaga
     2041 ataaaaagga atcaagatgg caattaacta caacataagt aatcacacta taaatttgat
     2101 aatttaaaga aagtcctacg acattatcac tttgtcctac catatccgcc atattgattg
     2161 aatttccatc ttttggacca taatcaagcg caattaaaga aagcacacat acagctgtaa
     2221 taggacggat tttaagtgag attaaaacag gataaataca tgctaacaaa agcaatccag
     2281 catagctaga aatgacgatt tttaaagcca ttccaacaac aaaagttcca cttaaaatta
     2341 agtatttatt ttttgatttt tcctgagggt ttatttgcta aaaaagcaag ttttgccgaa
     2401 gcattgatat gtttcatgta agcagtaaag cctgccacac tcatgataat aaaccctact
     2461 ccagaaagct gacttttaaa aatcgctgtg ataaaagata actatcaagt aaaacattta
     2521 aaaagcttgt atgctctctg cttggggctt ttggtatagg tgttcctgtg atgtaaaaag
     2581 caaaaataag caagataata tttgaaagaa aaatacaaaa atgagattat attttagtat
     2641 ataataagca acgacaatta ccgctaaaag tgtagaacat atcataaaaa ttggcatgat
     2701 ttctcctaaa gttattatta gcttttattt tagctaaaat ttaactaata aatatttttc
     2761 atttaaaatt ttacttattt tttgcattat aaaattaata atatgtatag tttggttact
     2821 gaaaagttta tgtttgttta aaaaaatgat ttttgtatta taattataca caaatcataa
     2881 atattaaaaa ggatctagtg tggcaagaat tttggcattt gatataggaa taagctctat
     2941 tggctgggca tttagtgaaa atgatgagtt aaaagattgt ggagttagga tttttacaaa
     3001 ggttgaaaat cccaaaacag gagaatcctt agccttgcca agacgccttg caagaagtgc
     3061 tagaaaacgc cttgctagac gcaaagcaag gctaaatcac ttaaaacatt taatcgcaaa
     3121 tgaatttaag ttaaattacg aagattatca aagctttgat gaaagtttag ccaaggctta
     3181 taaaggatct ttaattagcc cttatgagtt aagatttaga gctttaaacg agcttttaag
     3241 taagcaagat tttgcaagag tgattttaca tattgcaaaa aggcgtggct atgatgatat
     3301 taaaaatagt gatgataaag aaaaaggtgc gattttaaaa gctatcaagc aaaatgaaga
     3361 aaaactagca aattatcaaa gtgtgggcga gtatctttat aaagagtatt ttcaaaaatt
     3421 caaagaaaat tccaaagaat ttacaaatgt tagaaataaa aaagaaagtt atgaacgctg
     3481 catagcgcaa agttttttaa aagatgaatt aaagcttatt tttaaaaaac aaagagaatt
     3541 tggcttttct ttttcaaaaa aatttgaaga agaggtgctt agtgtagcat tttataaaag
     3601 ggctttaaaa gatttttctc atttggtggg aaattgtagt ttttttaccg atgaaaaaag
     3661 agcgccaaaa aattcgccct tagcttttat gtttgtagca cttacaagaa ttatcaatct
     3721 tttaaacaat cttaaaaata ctgaaggaat tttatataca aaagatgatt taaacgccct
     3781 tttgaatgaa gttttaaaaa acggcactct aacttataaa caaacaaaaa agcttttggg
     3841 cttaagcgat gattatgaat ttaaagggga aaaaggaact tattttattg agtttaaaaa
     3901 atataaagaa tttataaaag ccctaggtga tcatagttta agccaagatg atttaaatga
     3961 aatagcaaaa gatattaccc ttataaaaga tgagattaag cttaaaaagg ctttagcaaa
     4021 atatgattta aatcaaaatc aaattgatag tttaagcaaa ttggaattta aagaccattt
     4081 aaatataagt tttaaagcct taaaacttat cactccttta atgcttgaag gtaaaaaata
     4141 cgatgaagct tgtaatgagc ttaatttaaa agtagcaatc aatgaagata aaaaagattt
     4201 tttacccgca tttaatgaaa cttattataa agatgaggta actaatcctg tggttttaag
     4261 agcgattaaa gaatacagaa aggtcttaaa tgctttactt aaaaaatacg gcaaagtgca
     4321 taaaataaac attgaattag caagagaagt aggtaaaaat tacagccaaa gagctaaaat
     4381 agaaaaagag caaaatgaaa actacaaggc caaaaaagac gccgaacttg aatgtgaaaa
     4441 actaggctta aaaataaata gcaaaaatat tttaaaatta agattattta aagaacaaaa
     4501 agaattttgt gcttatagtg gagaaaagat taaaattagt gatttgcaag atgaaaaaat
     4561 gcttgaaatt gatcacattt acccttattc tagaagtttt gatgattctt atatgaataa
     4621 agttttagtt tttaccaagc aaaatcaaga aaaacttaat caaaccccct ttgaagcctt
     4681 tggcaatgat agtgcaaaat ggcagaaaat tgaagtttta gcaaaaaatt tacctactaa
     4741 aaagcaaaaa agaattttag ataaaaatta caaagacaaa gagcaaaaag actttaaaga
     4801 tagaaatcta aacgatactc gctacatcgc aaggcttgtt ttaaactaca ctaaagatta
     4861 tttagatttt ttacctttaa gcgatgatga aaatacaaag ttaaacgaca cacaaaaagg
     4921 ctcaaaagtg catgtagaag caaaaagcgg tatgcttaca tcggctttaa gacacacttg
     4981 gggctttagc gctaaggata gaaataacca tcttcatcac gccatcgatg cagtaattat
     5041 tgcttatgca aacaactcta tcgtaaaggc tttttcagat tttaaaaaag agcaagaaag
     5101 caacagtgca gaactttatg caaaaaaaat tagtgaatta gattataaaa acaaaaggaa
     5161 gttttttgag ccttttagtg gttttaggca aaaggtttta gataaaattg atgaaatttt
     5221 tgtctcaaaa cctgagagaa aaaagccaag tggagcttta catgaagaaa catttagaaa
     5281 agaagaagaa ttctatcaat catacggcgg aaaagaagga gttttaaaag ccctagagct
     5341 tggtaaaatc cgcaaagtaa atggtaaaat agttaaaaat agcgatatgt ttagagtgga
     5401 tatttttaaa cacaaaaaga caaataaatt ttatgctgtg ccaatttata ctatggattt
     5461 tgctttaaaa gtattaccaa ataaagctgt agcacgaagt aaaaaaggtg agataaaaga
     5521 ctggatttta atggatgaaa attatgagtt ttgcttttct ttatacaaag atagtttgat
     5581 tttaattcaa actaaagata tgcaagagcc agaatttgtt tattataatg cttttacaag
     5641 ctctactgtt agtttgattg tttcaaaaca cgataataaa tttgaaacgc taagcaaaaa
     5701 tcaaaaaata ttgtttaaaa atgcaaatga aaaagaagta atcgcaaaaa gcataggaat
     5761 tcaaaatcta aaagtatttg aaaaatacat agtttcagca cttggggaag ttacaaaggc
     5821 tgagtttaga caaagagaag attttaaaaa atgagttacg atgaagcttt taaaacactg
     5881 cttattagct ctaatgccaa gctaaattta gagctaaatc atcttgtgat taagcaagat
     5941 gaaaatatag ccaaattgtt tttaaaagat ataaatatca tcgttttaga aagcttacaa
     6001 gtaagcatta gttccgcact ttttaacgct tttgcaaggc ataaaatcat cttgctaacc
     6061 tgcgatgaaa ctcatagtat aaatggtgtt tttactcctt ttttagggca ttttcaaagt
     6121 gcaaaaatcg caaaagagca aatgaatgta agtgctcaaa aaaaggctat tttatggcaa
     6181 aaaatcatta aaaataaaat cctaaatcaa gcctttatct taaaaaaata caataaaata
     6241 gagcaaagca atgagcttat aaatttggct aaaaaagtaa gcttaaatga tagtaaaaat
     6301 attgaagctg ttgcggcggc gctttatttt aaaactttgt ttggtacttc tttttcaaga
     6361 gatgagcttt gctttgaaaa ttctgcttta aattatggct atgcaatcat tagggcttgt
     6421 attattagag cagtttgtat aagtgggctt ttgccttggc ttggcattaa gcacgataat
     6481 atttataatt cttttgcgct ttgtgatgat ttgatagaag tgtttagggc tagtgttgat
     6541 gattgtgttt taaagcttaa gggtgaaagt gagtttttaa gcaaagatga caaaagagcg
     6601 ttgattggca atttacaaag caaaatcaat tttgatgggc aaaattatcc tttaaacaga
     6661 gcgataaatc attatgtggc aaattttaaa aatgctttat tgtatgaaga tgaactaaag
     6721 atagtgaaat ttgatgattg aagataaatt tatgcgcgtg cttttgatgt ttgatgtacc
     6781 tactaaaagt aaaaaagagc aaaaactagc aagtaaattt agaaacaatc ttataaaatt
     6841 aggttatttt atgctgcaat ttagcgttta tatgcgtatt tgcaagggtt taagttctgc
     6901 aaaaagttct attgaaaatg taaaaaagat tttgccacct tatggaaatg taagggcttt
     6961 aatcatcact gaaaagcaat ttgataaaat ggagcttttg cttggtggca tagtttttaa
     7021 tgaaaaagtt aataacgaaa ccaatttaac actttttgat atagatagtc atggagaatt
     7081 taaatacaaa aattcaaata atgaagaaat acaactaaac aaaaaacaag aaaaatatca
     7141 tcagcaaaat ttatttgaat tttaaaagcg gttttagggg attgtaaccc cgcagagtcc
     7201 cgcaaactct ttattttagt ccctttttaa atttcttatg agattatagc ataatttttg
     7261 ctatttttca tgaaaaaacc ccgaaatttt cattatctgg taaatatcta ttttaccata
     7321 aagaaattta aaaagggact aaaactggct gctttgttca atcaaaagca ggggcatttt
     7381 accataaaga aatttaaaaa gggactaaaa caataacatt agagttatta taagttgcta
     7441 aattttacca ta
//
LOCUS       DARBAR010000079         7444 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.079, whole genome shotgun sequence.
ACCESSION   DARBAR010000079 DARBAR010000000
VERSION     DARBAR010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7444
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.079"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..100
                     /locus_tag="SB815_001292"
     CDS             <1..100
                     /locus_tag="SB815_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nicotinate-nicotinamide nucleotide
                     adenylyltransferase"
                     /protein_id="HEG0907013.1"
                     /translation="ASSFIRNTLNTNEVCEEIKDEVKKYYEKLQKN"
     gene            128..454
                     /gene="rsfS"
                     /locus_tag="SB815_001293"
     CDS             128..454
                     /gene="rsfS"
                     /locus_tag="SB815_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEG0907014.1"
                     /translation="MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(485..862)
                     /locus_tag="SB815_001294"
     CDS             complement(485..862)
                     /locus_tag="SB815_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HEG0907015.1"
                     /translation="MKKILVLLLLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKKEIKEYIDNL"
     gene            complement(910..2280)
                     /gene="pgmL"
                     /locus_tag="SB815_001295"
     CDS             complement(910..2280)
                     /gene="pgmL"
                     /locus_tag="SB815_001295"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HEG0907016.1"
                     /translation="MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVS
                     VGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSH
                     NPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFMCE
                     QFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAKPDGQFPNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTYVFCGDELCYLFAKNIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGAL
                     KGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEI
                     KARLKN"
     gene            2402..2938
                     /gene="fliL"
                     /locus_tag="SB815_001296"
     CDS             2402..2938
                     /gene="fliL"
                     /locus_tag="SB815_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HEG0907017.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            2938..3285
                     /locus_tag="SB815_001297"
     CDS             2938..3285
                     /locus_tag="SB815_001297"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEG0907018.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAIV"
     gene            complement(3286..3705)
                     /locus_tag="SB815_001298"
     CDS             complement(3286..3705)
                     /locus_tag="SB815_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907019.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFIISRNLDKQTIGK"
     gene            complement(3702..5063)
                     /locus_tag="SB815_001299"
     CDS             complement(3702..5063)
                     /locus_tag="SB815_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEG0907020.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAIIEVDEAMTFITADVIFRTIMS
                     SKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKDSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     REL"
     gene            complement(5060..6181)
                     /locus_tag="SB815_001300"
     CDS             complement(5060..6181)
                     /locus_tag="SB815_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HEG0907021.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKADLSKIE
                     KNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQEKIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            complement(6254..7438)
                     /gene="kpsS"
                     /locus_tag="SB815_001301"
     CDS             complement(6254..7438)
                     /gene="kpsS"
                     /locus_tag="SB815_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HEG0907022.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAVKMRKNQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYFKLINDLSRKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYNFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
BASE COUNT         2613 a         1315 c          942 g         2574 t
ORIGIN      
        1 cgcttcttct ttcatacgca acactttaaa tacaaatgaa gtttgcgaag aaattaaaga
       61 tgaagtaaaa aaatattatg aaaaattaca aaaaaattga tacaatttca aaaattaaag
      121 gacaataatg caagaaagaa tagatttaat cgttaaaatt ttagatgaaa aaaaagctga
      181 agatatcaaa accattgaca tgagcgagca agaatacttt gtaaaatatg tcattatcgc
      241 agctacttta ggagaaagac acgctctatc cttgatcgat gagcttaaaa cacaacttaa
      301 agccaaaggt gaggaatttt taaacataga tagtagcgaa gaatggagtg tgattgatct
      361 tggtgatatt ttaatccatc ttttaacacc agaacacaga ggaatttata atatagaaga
      421 attactagaa aatcttaaaa aaggtagggt ttaaaaaggc taaatttaat tagcctttta
      481 atttttagag attatcaata tattctttaa tttctttttt gattttctct ttttgttctt
      541 ttaaagcttc ttttttagct ttatactcag ccttactcat ataatctttt tgttctttta
      601 aagcatcaag ttctttttcg attttttcta cttcttgttc tttaagtttt ttagcttcta
      661 actttttatc ataaaacata ggatctttag cacaatcatt ttgtacttgt tttaaagcaa
      721 gctctaagct taaagttcta gctgtatcat tatgcgcttt agaaaaactg atttctttat
      781 tgatacgatc aatttttcta tcacattcac ttgcgccaaa agcaaacgca cataacaaaa
      841 gtagaacaag tatttttttc atttttaatt cctttttaaa ataaatttaa atcgcgaaat
      901 attatctcat caattcttaa gcctagcttt tatctcatta aacaaactaa ataccgtact
      961 ttcaagctct tttgctcttt ctaaagaagt tgcttcaaag cgtgtgataa gataagggct
     1021 ggtgttagat gcacgaagca aagcccatcc atcgccaaaa tctatcctag ctccatcaat
     1081 ttcacaaaga cttttaacac cttttaaagc tcctttttca atctcttttt gaaattcttc
     1141 cacaagttta aatttttctt cttcatttac aggaatttta atttcaggtg tagtataaag
     1201 ttttggtaaa gctttaatca tactttctaa atcaaaacct ttataaacaa gttctaaggc
     1261 tcttaaaaat gcgtaaattc catcatcata accaaaatat ctatgtttaa agaaaatatg
     1321 tccactcact tcagcagcta aatcaatatc tttttctttc atcatttttt tgatattaga
     1381 atgtcctgtt tttcccataa aaatagttcc aaatttagcc acttcatcaa aaagattttt
     1441 agaacatttt acctcaccta aaatgcgtgg attaggaata tttttagcaa acaaataaca
     1501 aagctcatct ccacaaaata cataagtttt actcaaagca accattctat cagcatcccc
     1561 atcaaaagca aaagctaaag aataatcttg attttgattt aaaaactctc taatcgcact
     1621 taagttttct tcttctgtag gatctggagc atggtttgga aactgtccat caggctttgc
     1681 aaacattaca tgagctttta aatttaaagc cttgattaaa ggctttatca ccactccagc
     1741 cgcaccattt gtgcaatcaa caccaaattt ataattaaaa tcctttaaaa aactaaattg
     1801 ctcgcacata aatttcacat aaaggcttaa aatatcgtat ttttctactt ctaaattttc
     1861 ttcaatatca tcatctaaat gcttataaac ttcttttgaa aactctttta attccacgcc
     1921 aaaaaaactt tctttattga tagtgatttt aaaaccatta taatcttttg ggttatgaga
     1981 gcctgttatc ataacatttg catcaaattt caagccctca taaagactaa aatatcccaa
     2041 tggagttggt acaagcccta tatcatagat ttttattccc gctttgttaa gtccactcac
     2101 tagataatta aaaagttcat ttgcactata tcttgcatca tagcccacac ttacattttt
     2161 acagccttta tttagcatgg tttgtcccaa gcaaaaacct atagccttaa cacttttttc
     2221 atttaattct ttgccataaa gccctcttat atcatattct ctaaaaatca catctaacat
     2281 ttttttcctt caaattcatc tcttctttga cctaaattta tcgtttttct aaagcaaatt
     2341 tggatagaaa agaaattttt gctacaattt tacattaatt tcactaaatg aaggaaaatt
     2401 tatggatgaa gaattagaaa acgaagaaac gaaaaagaaa aaaggtggtt cacttgtaat
     2461 tattattgtt attttacttt ttgttttact tcttagtatt atgggagtga ttgcttggct
     2521 tatttcaagc agttcaagtg atgaaagcga agtcaaagaa gctccaaaag aagaagcaaa
     2581 agccgataaa cctaaagttt cagctcctac tcaacgaggt agtgattttg ctaatatagg
     2641 tcctatgtat ccacttgatc cttttaccct aaatctactt agcgatagtg gctcaagata
     2701 tgtaaaatgc actatagaac tagaacaaaa tagcgaactt ttaaaacctg aacttgataa
     2761 aaaagtcccg gtgattcgtg atattattat tcgtacatta acagctaaaa cttttgaaga
     2821 agtaagtaca caaaaaggca aagaacgttt aaaagatgag ctagttggaa aaatcaatga
     2881 aattttaacc gatggcttta ttaaaaatgt ttattttacg gattttgtag tttcttaatg
     2941 cgtgtaggct gtgatatcat cgccatttct aggatagaaa aaattcattc tagacatggc
     3001 aaaaattttt tggataaatt tctaagccca aaagaacaaa tactcattaa aaatccagca
     3061 actctagcag gtctttgggc tgctaaagaa gccgctagca aggctttagg tgttggaatt
     3121 tgtgaattat gcagtttttt tgatattgaa atatcaaaag atgaaaaaaa cgcacctaaa
     3181 ttaaaatatt ctcaaaaaat tacaaaagat tttaatatca ctcaaacttc cctaagcatt
     3241 tctcatgata atggttttgc tatagccata gtggctatag tttgattatt ttcctatagt
     3301 ttgcttgtct aaatttcttg aaattatgaa atctaccaca ggttgttctc ttttatttgc
     3361 tcttttacaa tgatcttttt gaaaaaaatc tgtgattttt ataacaatcc ttgcccattt
     3421 tttacgattt ctttcacgcc acgcatgaga agaaacgctc tcccaagcat agccattaaa
     3481 caagcttgca tttacaaaat gatctaaggc tctaacaccc tgtcttgctc gtgcggtatt
     3541 aaaaaaagtt cctataatca cgataaaaag atatcctaaa actgctaaag gtactatcgc
     3601 acaaagcaaa atagtacctg ctaatttttc ttttaagctt ccttttaagg tgcgttttac
     3661 acgacgacga aaattggcgc gaattttagt tctaactctt ttcataactc tcttttgcta
     3721 aattttatcc tcataccatt agccgaacgc actgttaaac gtcctactac atcaggtaca
     3781 aaaccttctt caagttctag tttgtaagtt tttaaaatat tagccaaaat caaaatcgct
     3841 tcttgcatag caaaaccttg tcctatacaa attctttccc ctaccccaaa aggcaaataa
     3901 gcatcttttt tatattctcc ttcaaaacga gaaggattaa atccatgcgg atttgtccaa
     3961 aattcttcat gtctgtgtat caaccaagga gcaatcacca ccccagaatc ttttttaata
     4021 agcttatctc taacttgggt atcttttttt gcctctcttg caaaaaatcc aacaggagga
     4081 taaagcctta aagattcttt aaaaatattt gttaagtatt taaactgtct tagatgcgaa
     4141 atttcaatgg ctccaccctg taaaacctga gtaatctcct cataagcttt ttcttgctcc
     4201 ttaggataaa gactaagcaa ataaagcgtc catgtcaaag aacttgctgt ggtttcatgt
     4261 cctgctaaaa aaagcatagc cacttgatct aaaatttcct caaaagaaaa acgcttattc
     4321 gtatccgcat ccactactaa aagcaaagat cctaaaatat cttcaaattc tgcattatct
     4381 gccatatcat atcttggttt tatgatgtca cttaaaacct gcctaatcac atctccggcc
     4441 ttagcacgct tacgatctcc taatacataa gaaagccatt ttggaaaacg aaacatacga
     4501 cgcatggctg tatgcacact ttgctcttga aaagtcacaa aggcatttaa gattttttta
     4561 cctttttcct catcgagttt tgaagacata atggtgcgaa aaatcacatc agcggtaata
     4621 aaagtcatag cctcatctac ttcgataata gcatgatttg gatacttgct aaaacgatcc
     4681 atcatatctg ccacagcttc actcataaga ttaaacactt tattgatacg agtcatttca
     4741 aaacttggac gcaaaagctc tctttgcttt ttccaaactt caccatttgt agtaaaaatg
     4801 ctctctccta aaagcggact taaaagctca tgcaaaaatg cacttttagg aaattctcta
     4861 acttcatcaa ccatcattct tttaacttct ttagtgtcat ttatgacata aagatcaaaa
     4921 tttggcatct tcacatagcc tgtttgcatt ttataactac gctcataaag cccgtcaagc
     4981 caagatctac gctttaacaa aaaagttaaa agcgtagaag ctttattttt ataaggtttt
     5041 ggaaaaaagg ggcattcact catattttta ccttttcttc taaaaattta ggcattatga
     5101 tgaaagaaaa aaaatcataa tcacctttaa cactaatact ataaagatat aaaaagtgcg
     5161 ctttgttttt atctcttttt atttttttat actcatgttt ttcatataaa gtgtgaaatt
     5221 tagcacttaa aaatgggggt gtaaatttag catttacgcc actcgtgcgg aaaaaatcca
     5281 cttgaggaaa acatgctcca tcaataatcg atgtgtaatc ataccatttt aaatcaaacc
     5341 ttgaaacaaa ttcaagcttc tttctaaatt catccgcttt tttttgataa ctcactaaag
     5401 gaatgcattc tcctagagta agaattttta acttatgaag taaagataaa tctaaatttt
     5461 gtcttaaaat acactccaaa acttctatac aaactatagt tccaacacta tgtgctacta
     5521 aaacaagttc ataatcttgt ttattttcat tttgttttag cttatctact atggtattcg
     5581 caaaaagctt gattttttct tgcatagtgc ctgttttttt atcttgccaa gtagcacaaa
     5641 aagcacaaat tcttgctatc caaaatacag ctaatttctt acctaattta aataaaaaat
     5701 gatttagtaa aaatcctaaa aaacatccta tgatgatagc taaagaaaaa tgcatataat
     5761 tttgcaaaaa agcaaaactt ccaaaagcca aaaccaaaga aaatagtaaa gaaaataaca
     5821 cataaaaaaa aggataataa cctgtgataa gttgataaat cgactctttg ccaaatttga
     5881 taaaaagtcc tgtgatagta taaattctaa aaaaactata acaatctgcc aaagcatctt
     5941 tataattttc tgaccaattt ttcttaacaa tatcattcca tgttaaaaaa tgatatttag
     6001 tttgtactcc ttcgcaagaa atttgaaaaa aaggaaattg ctcatttttt tcaattttac
     6061 ttaaatcagc tttaatgtta aaagcatgag aataatcttt taggtttttt ttaaataaat
     6121 cataataaaa tctataactt ttaggatcat atcctgctat ataaaatact tccctatcca
     6181 tacaataatt tctttttgct tttaattata acaactttgc tttaaaagct ctcttaatca
     6241 aagcttttta gtcttatttg tctaaaaaga aatttttata aaaattgccg ttgaattgat
     6301 tagtttgtaa aagatatttc ttaaaattac ataccaaaac aggattgggt ttataagcat
     6361 gagcttcacg ccaaaaaaat tgaagttttt ttggataaga taagccttca aaattataaa
     6421 aagcattgcc acaaacctta gtcggacagc cttctaaaat agcactaagg cctactgttg
     6481 aatttatagt aatacaaccc aaagcctttc ttaaaagaac tggcaagtgg gtatcatgaa
     6541 catataaaac ccttccttct acatgatatt ttcgacttaa atcatttata agtttaaaat
     6601 aattcttata gcccctatcc atgggatggt gtttaaaaac tagataagat ttagctcttg
     6661 catggtttgc aaaagaaagt atggtttcct ctataaagtg ctctatgctt tttttgtaat
     6721 gatatttaat ttgcgtatcg ctataaactt gtaaaatcgc caaaaagtac tttttttcta
     6781 aattataaat cttttcattt agtttttttt ctgtaatctt ataaagatac tttctataca
     6841 atgatctaaa ccaaaataaa aattcaaaag gatataaagt gcgatgatga agtttgttgt
     6901 taaaaaatgg agccaaaata aaagcaaaca accaatacaa aaaagcatca aaagccataa
     6961 atttaaatcc acctggaatt tcttttatgc tttctttggt aaaaatattt tgagaaagat
     7021 aaaaattttt atcacgcggt aaagaagaat ttgcattcac cccatctttt tccaaagtaa
     7081 tacaataagg ccttaaatat ccttcttcaa aaatccatat ttcaattcct aattctttag
     7141 ccactttaat agccttagca tgtataatgc gacaatcatt atacattaaa atagcatcga
     7201 tttttttatt ttgaaaaaaa tctctataga aattttcaag atctttttca tcacacttac
     7261 acctcgttcc gctaggatag aaaaaaaaat ctccgccgtt aaaattgagt ttaaaaactt
     7321 tggtttggtt ttttctcatt ttcactgcaa gatgatgaaa aaaatttccc acaggccctt
     7381 gcaagagtaa aacattttta ccgctaaatt cttttttaat tttagtgcta aatctcattt
     7441 cttt
//
LOCUS       DARBAR010000080         7388 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.080, whole genome shotgun sequence.
ACCESSION   DARBAR010000080 DARBAR010000000
VERSION     DARBAR010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7388)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7388)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7388
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.080"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..674
                     /locus_tag="SB815_001302"
     CDS             <1..674
                     /locus_tag="SB815_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEG0907023.1"
                     /translation="QDKIAIIGSRRMSVYTKNRVFSLASMLKNAHLCVVSGGALGVDI
                     TASMAAMPNTIGIFANGLDQIYPRTNEKIIKQIYENALALSEYEDDYLPKNYDFLLRN
                     RLVIALSKAVVVAQADIKSGSMQSAKLALELNKPLYVLPQRLEESTGTNFLLKENKAK
                     LICDFKEFVSEFASIDMNQDEFLEFCKKGVSVDEALKIYGQKVYEYELEGKISIEGLF
                     IRVLA"
     gene            671..1054
                     /gene="ruvX"
                     /locus_tag="SB815_001303"
     CDS             671..1054
                     /gene="ruvX"
                     /locus_tag="SB815_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEG0907024.1"
                     /translation="MRALALDIGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALEYGI
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            1083..1921
                     /locus_tag="SB815_001304"
                     /pseudo
     CDS             1083..1921
                     /locus_tag="SB815_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
     gene            complement(2097..2594)
                     /gene="msrA"
                     /locus_tag="SB815_001305"
     CDS             complement(2097..2594)
                     /gene="msrA"
                     /locus_tag="SB815_001305"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEG0907025.1"
                     /translation="MKNIILGGGCFWCIEAVFERLKGVINTEVGYSGGKPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILILFFKIHDPTSIDKQGEDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPDQGYCQAVIAPKLQ
                     KIQSD"
     gene            complement(2636..3154)
                     /gene="ppa"
                     /locus_tag="SB815_001306"
     CDS             complement(2636..3154)
                     /gene="ppa"
                     /locus_tag="SB815_001306"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEG0907026.1"
                     /translation="MNLNKIKIGDIPNKINAVIEIPYGSNIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            complement(3164..3742)
                     /locus_tag="SB815_001307"
     CDS             complement(3164..3742)
                     /locus_tag="SB815_001307"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEG0907027.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVINTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERAIEPIVADMKELIKKIQSI"
     gene            complement(3739..5490)
                     /gene="aspS"
                     /locus_tag="SB815_001308"
     CDS             complement(3739..5490)
                     /gene="aspS"
                     /locus_tag="SB815_001308"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEG0907028.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLITEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIKVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFTKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKKDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELKLIDPNTLEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNINETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANNIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            5581..6441
                     /locus_tag="SB815_001309"
     CDS             5581..6441
                     /locus_tag="SB815_001309"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HEG0907029.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLF
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCMLCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            6441..>7388
                     /locus_tag="SB815_001310"
     CDS             6441..>7388
                     /locus_tag="SB815_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG0907030.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIEVDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSTKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARAQIEKISSINPQIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKELEKKF"
BASE COUNT         2509 a         1056 c         1225 g         2598 t
ORIGIN      
        1 aacaagataa aatcgctatt ataggttcaa ggcgtatgag tgtttatacg aaaaatcgtg
       61 ttttttcttt agcgagtatg cttaaaaatg ctcatctttg tgtggtaagt ggcggtgctt
      121 tgggtgtgga tatcaccgca agtatggcag ctatgccaaa tactataggt atttttgcca
      181 atggtttaga tcaaatttat ccaagaacta atgaaaaaat cattaaacaa atttatgaaa
      241 atgctttggc tttaagcgaa tacgaagatg attatttgcc aaaaaattat gactttttac
      301 taagaaatcg tttggttatt gctttaagta aggccgttgt agttgcacaa gcagatataa
      361 aaagtggttc tatgcaaagt gcaaaacttg ctttagaact caataagcct ttatatgttt
      421 taccgcaaag actagaagaa agcacaggaa ctaattttct tttaaaggaa aataaagcaa
      481 agttaatttg tgattttaaa gaatttgtaa gtgagtttgc aagtatagat atgaatcaag
      541 atgagttttt agagttttgt aaaaaaggtg tgagtgttga tgaggcttta aaaatttatg
      601 gacaaaaagt ttatgaatat gaacttgagg gaaaaatttc catagaaggg ctttttataa
      661 gggttttagc atgagagctt tggctttaga tataggttta aaacgcatag gtgtagcgct
      721 ttgcatagat aaaaagatcg ctttgccttt agatgcagtt ttaagaaaaa atcgcaatca
      781 agccgctaat gaaatcaaaa atttacttaa aatacatgaa atttctttac tcattgtagg
      841 cattcctaag ggtggatcaa gtgaagaaga aatgacaaga cgcattaagc attttgtttc
      901 tttgcttgaa tttgataaag aaatttgctt tgtagatgaa agcggaacaa gcaaagaagc
      961 tttagaatac ggcatagcca atacacgcaa aaaagatggt aaattagact ctttatccgc
     1021 ttttatcatg ataaaggatt attttgctct ctagaataga aaaactttat accaaagatg
     1081 aaatgcaaaa tattttatct tcttttactc aagaaaaaaa tgtttgtgta tttgcaaata
     1141 ctttaaaaat tagcattgaa gaattagaaa aagaattttt aaaacaaaaa ttaaaattta
     1201 aaaagatcaa tgcttattgt tatttgtttg atgccaaaga taaggctatc ttaagttcta
     1261 tgaaagcttt taatgaggcg cacttttata tacaaaatta ttcttcttat ttgtgtgctt
     1321 taaatttaga agtcaaagca gggcaaaggg ttcttgatat gtgtgcagct ccgggtggta
     1381 aaagtatcaa tcttgcaaat tttatgcaaa atacaggtta tttagcttgc aatgagatga
     1441 gtagggatag attttttatt ttgcaaaaaa atcttaaaaa ttacggcgtg aatgctaaag
     1501 tttttatgaa agatggtaaa aatataggca atttatgtcc tttaaaattt gataaaatct
     1561 tacttgatgc accttgttcg acttttgcta aaataggttt tgatttggaa aaaagttata
     1621 aagaaatcaa aaatattgca aaaactcaaa aaaacttcta cattctgctt taaaggcatt
     1681 aaaaataggt ggagagcttg tatatagtac ttgcaccttt accaaagaag aaaatgaaga
     1741 agtgatagag aatgctttaa aaagtgagtt taaattagag cttttagata ttgatttgga
     1801 aaatgttgag gctaaagcag ggcaaagtga agaatttgct gaaatttcaa aatgcagacg
     1861 gattttacca agcttagact atgatggatt tttcatagct aaacttagga aattatgtta
     1921 attaataaaa ttattcacat ttaaatacaa attcataaaa aaacttaaaa aacaataaat
     1981 aattttttct ttattttaaa gcttaaagtt ctatttttaa gtactttgaa aagaaaatca
     2041 cagcgtgaaa aggctgtgaa taaagttgaa ttttttttaa ccttaaaaag atgaaattag
     2101 tctgattgta ttttttgcag ttttggagct attacagctt gacaatatcc ttgatcggga
     2161 ttatttataa aataatgttg atgatagttt tcagctttat agtaagtttg caatcttgaa
     2221 attttagtaa ctattttttt actaaatatt ttttgctgtt cttcaatgaa attttgagct
     2281 aaaattttat cttcttcatt ttcgtaaaat attattgagc gatattgtat gccaatatct
     2341 tcaccttgtt tatctatact tgttggatca tgaattttaa aaaagagtat taggatttca
     2401 agaagagaga tttgtttttc atcgtaattt attttgacaa cttctatgtt accatcacca
     2461 ttacacacgc tttcatagct aggatttggt tttcctccgc tatatccaac ttcagtattg
     2521 attacacctt ttagacgttc aaatacggct tcaatacacc aaaaacaacc accacctaaa
     2581 atgatatttt tcattgcgag ttttccttaa gcttagccct ttgaaagggc taagcttatt
     2641 tatagttttt gattgctttt tctaaaattt caattgcggc tttttcatct ttgaagtctt
     2701 gcactttaac ccatttattt ggttctaaaa ttttataagt ttcaaagaag tttttgattt
     2761 tattcaaagt tgcctgtggt aagtctgtat aagtttttat attatcatat ctcgcatcta
     2821 tttttgaatt tggaactgca agaagttttt cgtccattcc actttcatct tccatgatta
     2881 aaacaccgat taagcggcaa ggaatcacag ctccagcttg gataggatat tcattaagca
     2941 ctaaaatatc tacaggatca ccatcatcag ccaaagtatt agcaataaaa ccatagtttg
     3001 ctgggtaaaa catcgcgcta gccataacgc gatctaccat gatagcaccg ctatctttat
     3061 cgatttcgta ttttatattt gagccatatg gaatttcaat tacggcattg attttatttg
     3121 gaatatctcc gattttgatt ttgtttaaat tcattttttc tccttatata ctttgaattt
     3181 ttttaatcag ttctttcatg tctgcaacga taggttcgat agcgcgctct ccatcgataa
     3241 taaaatgaag ttttttcttt tgataaaaat ctaaaatttc atttaaaggt tctgtataaa
     3301 ctttcattct attgtaaaac acttcttcat tatcatctgc gccacgattt ctgcctaaaa
     3361 ctctttcttt agcaacttct tcgcttactc ttacttctat gacgccttta agacaaattt
     3421 cattttgctc acttaaaacc ttatcaaatt ccatcatttg ctctacgctt cttggatagc
     3481 catcgatgat gatagtttta gttggagcag cttttagagc acaaactata gtatttataa
     3541 caacatctaa aggaacaaga ttgcctttgg agataaaact atctatagtt tttccaagct
     3601 cgctcccact tgctacttca gctcttaaaa gatctcctgt tgaatagtgt gtaatatttg
     3661 tcgcatctgc ttgtgcgatt aaactagcat cggtagtttt tccactacct ggtgcaccta
     3721 tgattaaaaa caattctttc attttatatt ctcccttaat ttgattccta attctctcat
     3781 tgcttcattg ctagcaggcg atggtgcatc tgtcattaag cattgcgctc tttgggtttt
     3841 tggaaaggct ataacctctc ttatgttgtt tgctcctgta actagcatga tgagtctatc
     3901 aagtcctata gcgatacctc catgtggtgg agcaccaaaa cttaaagcat caagcaagaa
     3961 gccaaatttt tctttttgtt gttcttcatc gatatttaaa agtttaaata ctttttgttg
     4021 aatatcattt ttatggattc ttatactacc tccacctagc tcaacgccat ttaacactac
     4081 atcataagca atagatgaaa tttcttctaa atcagtctca ttaatatttt ttggcatggt
     4141 aaaaggatgg tgcatcgcag aataacttcc gtcatcattt tgctcaaaca taggaaaatc
     4201 aacaacccat aagaattcca aggtatttgg atctataagt tttaactcgt tggctaagaa
     4261 aattctaaat cttcccatat aatcaagcac ggttttttta gctcctgcac cgaaaaatac
     4321 cacatctcct acttcaagct cacagcgttt gcttagctca tttaaatctt cttcgctaaa
     4381 gaatttacaa agtggacctt taagcccatc ttttttaact tgtatgaaag ctaagccttg
     4441 ggcgccaaat ttacgcacaa attcttcaaa tctttgcatt tgtctttttg aaaaaatagt
     4501 atcgcctttt ggaacgcgta tggctttgat gcgatttttc tttgtatctt tggcaatatt
     4561 tgcaaaaatt tcattatttg acttagtgaa aatatcaatc acatcaataa atttaagatc
     4621 aaatcttaaa tccggcttat cagagccata attttccata gcgtctttgt attgcatttg
     4681 tctaaaaggg gtttgaattt ctttgccgca agctttgaaa atatctttta aaaaagtttc
     4741 agctaccttg atcacatctt tttgttcgca aaagctcatt tcaacatcaa tttgtgtgaa
     4801 ttcaggttgg cgatcagctc ttaaatcttc atctctaaaa cattttgcaa tttgaaaata
     4861 acgatcaaaa ccgctacaca ttaaaagttg tttgaaaagc tgagggcttt gtggaagagc
     4921 ataaaattca ccctgatgca cacgagaagg cacgagataa tctcttgcgc cttcgggagt
     4981 agctttggta agaatagggg tttcaacttc taaaaatccc atatttgcca aagaatttct
     5041 agctgctata caagctttag aacgcaaggc aaaattttca taaagtttag gatttcttaa
     5101 atctaaaaag cgatatttta agcgtaattc ttcatttaca ctttcatcag cgatagcaaa
     5161 aggaggtacg gcactttcat tttctatggt aagtttagaa acaactactt cgatttctcc
     5221 tgtttttaac ttaggattta caagtccttc gccacgcgga cgaatagtac cttctgtaat
     5281 aagtacaaat tcatttcttg cattggaagc gatttcatga gcttctttac tatcatttgg
     5341 atcgcaaaca agttggataa taccgcttct atctcttaaa tctataaaaa taactccacc
     5401 atgatcgcgg tagctattta cccaaccgca aagtttaacg ctttgaccaa catgggaaat
     5461 tcccaagtct gtattataat gacttcgcaa atttattcct tgaaaaagat tttttaagat
     5521 aatgagcaaa attatagtat ttttattctt ttgctttgct aagatttgat ataatttttt
     5581 atgcaaaata aaatagatta taaaaatatt aaaaaaattg gacttgttac gcgacccaat
     5641 gtgagtttag ataaggaaat tttaaaactt caatcgattt tatctatata taaagttgaa
     5701 cttgtattgt ttaaagaaag ttctgaaatt ttagatttgc caaagtatgg attggatgat
     5761 ttgtttaaaa tatctgattt tgttatttct ttaggtggag atggaacttt gatttcttta
     5821 tgtcgtaaag cttgtgaata tgataaagca gttttaggaa ttcatgctgg acatttaggt
     5881 tttttaacag attttaaagt tgatgaagct gaaaattttt ttcaagcttt ttttcaagga
     5941 gaatttagaa tagaaaagcc ttatttgtta agtgtttttt tagaagataa gcaaggaaaa
     6001 attttagaaa aattagcttt taacgatgtg gttatcagta aaaacaatca agcttctatg
     6061 gctcatatag aagtttttag aaaagaaaag aaatttaatg aatattttgg agatgggctt
     6121 attgttgcaa ctcctgcggg ttcaacagct tataatttaa gtgcaaatgg acccatagtt
     6181 tatactttag ctcaagcttt tatcttaact cctgtttgtt ctcattcttt aacacaacgc
     6241 cctattgtct tgccaaaagg ttttgaaata gagattatgg caaaggattg catgctttgc
     6301 attgatgggc aagaaaatta taaaatgaat gattttaaaa gtataaaagt gggtttaagt
     6361 gataaaaatg tggctttaat tcacccaaaa aatagggatt attttcaaat tttaaaagaa
     6421 aaattacact ggggaaattg atgataaata gaatttttat gaaagaaaat cttggtttta
     6481 aaaaggctga gcttgaaatt tctaaagggc ttaccgtttt tacaggccta agtggagctg
     6541 gaaaatcggt cttgtttaaa ggaattttat ccgcattttc tttgagtgaa agtgaggcta
     6601 aaattgtcga aatagaagta gatgataagt tggatttaga aagttttggt atagaaagtg
     6661 aagaggagaa tgtttttaag ctcttaaaag aaaaaaacac aaaatatttt attaacaatc
     6721 aaagcatagc gaaaaaaagt ttgcaaaatt taagtaaaac ttttattaag tatttaagca
     6781 caaaggaaaa taacgaattt ggaaatgaaa aatttttaaa tctcttagat gccttggaga
     6841 tgcaagaaaa tacaaatttt gtttcctttt tagaagattt taaaaaagat tttaatgctt
     6901 atagtcaaat ttctaatgag cttaatgcaa ttttagaaga agaaaaaaaa gtagaagaat
     6961 taaaagaact agctagagcg caaattgaaa aaatttcaag cattaatcct caaataggcg
     7021 agtatgaaga gcttttaata cttaaaaaaa agctttctaa aaaagataaa ttagaagaag
     7081 cttggagtaa ggcagagcgt atttttgagc ttgaaaaagt tgttattgaa gctttaaatt
     7141 taagcgaagt tgatgcgagt ttttttagtg aatgtttaaa tgaattgcgt gtgatttgcg
     7201 aaaatcaaaa aatggaagat ttagattttg atgtggaggc gcttttagat cgcattgaaa
     7261 atttatccta tcttatcaag cgttatgaaa gcatagaaaa tgctttagaa gttttaaaac
     7321 aaaaaaaata tgagctagag cattatgaaa atttaagttt tgaaaaaaaa gaacttgaaa
     7381 aaaaattt
//
LOCUS       DARBAR010000081         7272 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.081, whole genome shotgun sequence.
ACCESSION   DARBAR010000081 DARBAR010000000
VERSION     DARBAR010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7272)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7272)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7272
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.081"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..1155
                     /locus_tag="SB815_001311"
     CDS             <1..1155
                     /locus_tag="SB815_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HEG0907031.1"
                     /translation="ILKFHSIKSGTKVFDWIVPDEWNVKEAYIITPKGEKICDFKKHN
                     LHLLNYSEAIDQEIELEELQDHLYSIEEMPDAIPYVTSYYKRRWGFCLTHNERKKLKK
                     GKYKVYIDAKHDENGVLDYADFILPSTQNSKDEILISTYLCHPSMANNELSGPVVSIF
                     LAKWLLGLKERRYNYRFVIIPETIGSIVYLSKHLECLKKHVKAGFVLSCLGDDHTYSL
                     IHTVKENTLSDKVALHTLKNKENFKAFSFLDRGSDERQYNAPLVNLGIVGVCRTRYGD
                     YDGYHNSKDDLNFISEKGLMGGLQSMQEMILNLEINAVYENTIVCEPNLGKRGLYHTL
                     STTNDIPLACNFLAYCDGENDIIDIANILNMQAYEFKELLEKIKFYGLVK"
     gene            1152..1943
                     /locus_tag="SB815_001312"
     CDS             1152..1943
                     /locus_tag="SB815_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
                     /protein_id="HEG0907032.1"
                     /translation="MKYFLEHNGKKYSDKDLIDAFYQLGIKRGDILCVHTELMKFGKA
                     LLTKNDFLKTLLECFFKVLGKEGTLLMPTFTYSFCKNETYDKVHSKGKVGVLNEFFRT
                     SGGGVRRTSDPIFSFAVKGAKADIFLKENSSCFGKDSVYEILTREGGKFMLLGLNYGH
                     ALTHYAEERNTSFCRYFKEFKGFVIDELGQKREKRINYYVRDLEKAYVCSLDKINEIV
                     RQTRYYKSIKFAGDFLESYDAKEYVKAIGNALKQDKFAIYEKLLL"
     gene            1964..2755
                     /gene="legH"
                     /locus_tag="SB815_001313"
     CDS             1964..2755
                     /gene="legH"
                     /locus_tag="SB815_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase LegH"
                     /protein_id="HEG0907033.1"
                     /translation="MKYLLEFENKKYSTYDFIETFYKLGLQKGDTLCVHTELFNFGMP
                     LLSRNEFLQTILNCFFEVIGKEGTLIMPTFTYSFCKNEIYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLTKENGKYMTFGGQGHTL
                     THYAEEQFNVFYRYHKIFSGILIDENNISYNKTISYYVRKLDISSEPNLINIINIVNN
                     TKNFKKNNFAGDHINIYNAKEYIEILWKKLDINQTILIENYDTIY"
     gene            2786..3016
                     /locus_tag="SB815_001314"
     CDS             2786..3016
                     /locus_tag="SB815_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG0907034.1"
                     /translation="MEKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFNKEDLSLLKSQSALLEKIQTLKAEK"
     gene            3013..3906
                     /locus_tag="SB815_001315"
     CDS             3013..3906
                     /locus_tag="SB815_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG0907035.1"
                     /translation="MKENIEKLFQAIAQKNPIHSKYLKKIEFSQEDEEEFDKLISYYI
                     QDGISIKEQCDCYLLILNDTLEETKFFIENGAYRYSSFDEVKDKVYFNESYMKQYMIG
                     LALSSFVWIAHIKVRKYFSQYLQNFTPKTTYFEIGPGHGEYFARAVKSGKFSAFYGLD
                     ISPTSCELTQKMVKQQVGGLITKCDFLCQDFFTYDFDKKADLIVIGEVLEHVEKPLEF
                     LKRSKELLSDGGEIFATIPINAPAIDHIYLFSHPDEVKDLIEKSGLKFKAYECFMAND
                     YSLEKALKFKNAITMAVVLNA"
     gene            3899..4315
                     /locus_tag="SB815_001316"
     CDS             3899..4315
                     /locus_tag="SB815_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEG0907036.1"
                     /translation="MLNTTLNLPLHHIGVACKNLEKERECFFKLGFYKESEFIDEKQG
                     VRGEFIIPCNEAFPQYRFELLQNLNDKGPLDSYLKNNTKMYHLAYESKNIAQDLILLE
                     QQGGICIVPIMQASYFAKLCFIMMPNRLLIELVELK"
     gene            4312..5874
                     /locus_tag="SB815_001317"
     CDS             4312..5874
                     /locus_tag="SB815_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG0907037.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDNTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFEIRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKITGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            5864..6925
                     /locus_tag="SB815_001318"
     CDS             5864..6925
                     /locus_tag="SB815_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEG0907038.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTVAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPTLLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKNILIYTKEK"
     gene            6925..7146
                     /locus_tag="SB815_001319"
     CDS             6925..7146
                     /locus_tag="SB815_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG0907039.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFTLKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(7160..>7272)
                     /locus_tag="SB815_001320"
     CDS             complement(7160..>7272)
                     /locus_tag="SB815_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG0907040.1"
                     /translation="QKRKSFMQENSISYPCGNKVFIFKDVGDKFELVIKD"
BASE COUNT         2728 a         1039 c         1189 g         2316 t
ORIGIN      
        1 atactcaaat ttcactctat aaaaagtggc acaaaggttt ttgactggat agtccctgat
       61 gaatggaatg ttaaagaagc ctatatcatc actccaaaag gagaaaaaat ttgtgatttt
      121 aaaaagcata acttgcacct tctaaactat agcgaagcca tcgatcaaga aatcgaacta
      181 gaagaacttc aagatcatct ttactccata gaagaaatgc ccgatgctat tccttatgta
      241 acgagttatt ataaaaggcg ttggggattt tgtctcacgc acaacgaaag aaaaaaactc
      301 aaaaaaggca aatacaaagt ctatatcgat gcaaaacacg atgaaaatgg agttttagat
      361 tatgctgatt ttatcctacc tagtacgcaa aactcaaaag atgaaatttt aatttcaacc
      421 tatctttgcc acccttccat ggcaaataat gagcttagtg gccctgtagt gagtattttc
      481 ttagcaaaat ggcttttggg tttaaaagaa agaagatata attaccgctt tgtcatcatc
      541 cctgaaacca taggctctat agtctatctt agcaaacatt tagagtgttt aaaaaaacat
      601 gttaaagcag gctttgtgct ttcttgctta ggcgatgatc atacttactc actcatacac
      661 acagttaaag agaacactct aagcgataaa gtcgccctgc atacgctcaa aaataaagaa
      721 aatttcaaag cttttagttt tttagatcgt ggaagtgatg aaagacaata caatgcccca
      781 cttgtaaatc ttggcatagt aggggtatgt cgcacaaggt atggtgacta tgatggatat
      841 cataactcaa aagatgatct caattttatc tctgaaaaag gtttaatggg tggacttcaa
      901 agcatgcaag aaatgatttt aaatctagaa atcaacgccg tatatgaaaa caccatagta
      961 tgcgaaccca atcttggcaa aagaggatta tatcacaccc ttagcactac caatgacatt
     1021 cctttggctt gtaatttttt ggcttattgc gatggagaga atgatatcat cgatatagcc
     1081 aatatcttaa atatgcaagc ttatgaattt aaagaacttt tggaaaaaat aaaattttat
     1141 ggactggtaa aatgaaatat tttttagaac acaatggcaa aaaatactcc gataaagatt
     1201 taatagatgc tttttatcaa ctaggtataa aaagaggcga tattttatgc gtacatacag
     1261 aacttatgaa atttggcaaa gctttgctta ctaaaaatga ttttttaaaa accttacttg
     1321 aatgcttttt taaagtgcta ggcaaggaag gcactcttct aatgccaacc tttacttata
     1381 gtttttgcaa aaatgaaact tatgataaag tgcattctaa aggcaaagtg ggagtgctga
     1441 atgaattttt tagaactagc gggggggggg ttaggcgaac tagcgaccct attttttcct
     1501 ttgctgtgaa gggtgctaaa gcggatattt ttttaaaaga aaactcaagc tgttttggaa
     1561 aggatagtgt atatgaaatt ttaactaggg aaggtgggaa atttatgctt ttaggcttga
     1621 attatggaca cgccctaacg cattatgctg aagagagaaa taccagcttt tgcaggtatt
     1681 ttaaggaatt taagggcttt gtgattgacg agctaggaca aaaaagagaa aaaaggataa
     1741 attattatgt aagagacttg gaaaaagcct atgtatgcag ccttgataag ataaatgaaa
     1801 tcgtgcggca aacaaggtat tacaaaagca taaaatttgc aggagatttt ctagaaagct
     1861 atgatgctaa agaatatgtc aaagccatag gcaacgccct taagcaggat aaatttgcca
     1921 tatatgaaaa gcttctttta tgaaaaatat ttaaaggtag tttatgaaat atttacttga
     1981 atttgaaaat aaaaaatact ccacttacga cttcatagaa actttttaca aactaggact
     2041 acaaaaaggc gataccttgt gtgtgcatac tgaacttttt aactttggca tgcctttgct
     2101 ttctagaaat gaatttttac agactatact caattgcttt tttgaagtta taggcaaaga
     2161 aggcactttg atcatgccaa cctttactta tagtttttgc aaaaatgaaa tttatgacaa
     2221 aataaattcc aaaacaaaaa tgggagcatt aaatgaatat tttcgcaaac aaacaggagt
     2281 aaaacgcaca aatgatccta tattttcttt tgctataaaa ggagcgaaag aagaattatt
     2341 tttaaaagat acaacaagtt gctttgggga aaattgtgtt tatgaggttt taactaaaga
     2401 gaatggaaaa tatatgacat ttggaggcca aggacacaca ctaacacatt atgcagaaga
     2461 acaatttaat gtattttaca gatatcataa aattttctct ggaattttaa ttgatgaaaa
     2521 caatatatca tacaataaaa ccattagtta ttatgttaga aaacttgaca tatcttctga
     2581 gcccaattta attaacatta tcaatattgt taataatact aaaaatttta aaaaaaacaa
     2641 ttttgcagga gatcatataa atatttacaa cgctaaagaa tatatagaaa ttttatggaa
     2701 aaaattagat ataaaccaaa caattctaat agaaaattat gatacaatat attaattttc
     2761 aacattctca agaaagtggt atacaatgga aaaacaattt tatgaaattt tagaaaatat
     2821 acttgaaacc aaagtagatg aaaatacaaa tttaagcatg gaaaactgca agaactggac
     2881 ttctttagct catattgata tcatcatgag tttagaagaa gaatttgaaa tcaaatttaa
     2941 caaagaagat ttaagtctct taaaatctca aagcgcttta ctagaaaaaa ttcaaaccct
     3001 aaaggcagaa aaatgaaaga aaatattgaa aaattatttc aagccatcgc tcaaaaaaat
     3061 cctatccatt ctaaatatct taaaaaaatt gaattttcac aagaagacga agaagaattt
     3121 gataaattaa tttcttatta tattcaagat ggtatcagta taaaagaaca atgcgattgt
     3181 tatttattga tccttaacga tactttagaa gaaacaaaat ttttcataga aaatggggct
     3241 tatcgttatt ctagctttga tgaagttaag gataaagttt attttaatga aagctatatg
     3301 aaacaataca tgataggcct agctctttct tcttttgttt ggatagctca tattaaagtg
     3361 agaaagtatt tttcacaata tttgcaaaat ttcactccaa aaacaactta ttttgaaata
     3421 ggccctggcc atggagaata cttcgcaaga gcagttaaaa gtggtaaatt ttcagccttt
     3481 tatggacttg atatctctcc aacgagttgc gaacttactc aaaaaatggt aaaacaacaa
     3541 gtaggaggat tgattacaaa atgcgatttt ttatgtcaag atttttttac ttatgatttt
     3601 gataaaaaag ctgatttgat agtaattgga gaagtgctag aacacgtaga aaaacctctt
     3661 gaatttctta aaagatctaa agaacttctt agcgatggag gagaaatttt tgcaactatc
     3721 cctatcaatg ctcctgctat tgatcatatt tatttatttt cccatcctga tgaagttaaa
     3781 gatttgatag aaaaatcagg cttaaaattt aaagcttatg aatgttttat ggcaaatgat
     3841 tatagtttgg aaaaagcatt gaaatttaaa aatgctatca ctatggcagt agttttaaat
     3901 gcttaataca acactcaatt taccccttca tcatataggc gtggcttgta aaaatttaga
     3961 aaaagaaagg gaatgttttt ttaaactagg tttttataaa gaatcagaat ttatagatga
     4021 aaaacaaggg gtaagaggcg aatttatcat tccttgtaat gaagcatttc cacagtatag
     4081 atttgaactt ttgcaaaatt taaacgataa aggaccacta gatagctatt tgaaaaataa
     4141 taccaaaatg tatcatttag cctatgaaag taaaaatatc gcccaagatt taattctttt
     4201 ggaacaacaa ggaggcattt gtattgttcc tattatgcaa gcaagctatt ttgctaaact
     4261 ttgttttatc atgatgccaa ataggctttt aatcgaactt gtggagctaa aatgaatctt
     4321 ttttcacccc atttaaaacg caatgagctt ataaaattcg ccaaagaatt agactttagt
     4381 aaaagtcaag atcttcttat taatgtccat agaaatcatg cttttgaagg agtgcaaagt
     4441 atcattgctc cttttttaca ttttgctaat ttaagagctg agtttaattt cagctcttat
     4501 gatgatagct tgagttttga taactttaaa gaagctagtt tagaactttt atggctagat
     4561 ttaacccgct ataaaaataa tgtgcaaaat tttatagaag aaagactttt agaactaaga
     4621 aaaatttcac aaaaccctat tttagttctt agtttaggag aatttaaaac agataaaaaa
     4681 attttaaatt gtgaaatttt taacatagaa aaactcataa aagagtattt tgatgaagaa
     4741 gatattttag acttagctaa agaagaactt acaggctcta agcttaataa taaagccttg
     4801 atttttttag cacaaatttt aggacttagt ctcatccctg cacttgtaaa acccgctctt
     4861 aaagctcttg tacttgatct tgataatacc ttgtatcaag gaattttagg tgaagagggt
     4921 atagataatc ttaatttaag tcctttgcac aaaaccttac aagaaaaaat taaaactttt
     4981 aaaaaacaag ggtttttact tgccctagct tcaaaaaatg aagaaaaaga cgcaaaaaaa
     5041 ctttttgaaa taaggaaaga tttcatctta caatgggatg attttgatgc tagaatgatc
     5101 aattgggagc caaaaggtga aaatatctta aaaattgcta aaaaatttaa tataaatact
     5161 aacgctatgc tttttataga tgataatatc gccgagcttg aaaataccaa aattacaggc
     5221 gttaaaacac ttttatgcga tgaaaatata ctttataaaa tcaaactttt tcctaatctt
     5281 ttaaaacttt caaataccaa agaagatcaa attcgtgcca aagatatagc agccaatgct
     5341 ttaagagaag agcttaaaag cttaagcgat gaagaatatt ttcaaaatct tgaaatcagc
     5401 ttaaatttta gcaaaaatga tctgcaaaat atccctcgca ttagcgaact tttaggcaaa
     5461 accaatcaat ttatcgctaa ttacacacgc ttaaatcaag aaaaagtcgc acaacacatg
     5521 caaaaagaac tcattgtaag tgtgagtatg agtgataaat taagcgatag tgggattatc
     5581 gctatttttg ttttttcttg taaagaagga aatttattta tcgatgatct ttgcatttct
     5641 tgtagggctt taggtagaaa acttgaaact agaatgtttt ttaaagcctt tgaactagct
     5701 ttacatttct ttgatcttaa aaacaataat gcaaggcttt attatcaaaa aggcgaaaga
     5761 aatatgccat ttttgagctt tttagaacaa atttccaaag aatttgaaaa aaactcagcc
     5821 cttattccat ttcaaaattt aaacttcaaa ggacttataa tccatgaaaa ctagatttga
     5881 taaagctaaa atttcaggca tttgcgtaag cgtacctgaa cataaaattt gcattgatga
     5941 tgagttagaa agcgtttttt caaacgatat caaaaccctt aaaagaatga aaaaagtcat
     6001 aggtttaaac acgcgttata tttgcgatga aaacacttgc gtaagcgatc ttggaaaaca
     6061 cgcagccaat acacttttac aaggtttaaa tatagataaa aatagccttg atgcactcat
     6121 cgtagtaact caaagtcctg attttttcat gccttctacg gcttgttatt tacaccaact
     6181 tttaaattta agctccaaaa ctgtagcttt tgatttaggg caagcttgtg cagggtattt
     6241 atacggctta tttgtcgctc attctttaat acaaagtggc ttaggtaaaa ttttactcat
     6301 ttgtggagat actttaagca aattcatcca ccctaaaaat atgaatttag ctcctatttt
     6361 tggtgatgga gtaagtgcaa ctttaattga aaaaacggat tttaacgaag ctttttttga
     6421 gcttggaagc gatggaaaat attttgataa actcatcatt ccaaaaggtg cgatgagaat
     6481 acctaaagca gatattttta acgatgattc gctcatgcaa actgaggagt ttagacaatt
     6541 agaaaacctt tacatggacg gagcaaatat tttcaatatg gctttggaat gcgaacctaa
     6601 aagctttaaa gaaattttag aattttctaa agtagatgaa aaagacattg cttttcatct
     6661 ttttcatcaa tccaatgcgt atttggttga ttgcatcaaa gaagaattaa aacttaatga
     6721 tgataaagtt cctaatttta tcatggaaaa atacgctaat ttaagcgctt gttcactacc
     6781 taccctactt tgcgaactag atactccaaa agaatttaaa gcgagtttaa gtgcttttgg
     6841 tgcagggctt agctggggaa gtgcggtgtt gaatttcaaa gatttataca caaaaaatat
     6901 tttaatttac acaaaggaga aataatgaca aaaactgaat ttttagaaga gcttaaagaa
     6961 gctatgcata gagatgaaga cttaaatgaa gatatgctac ttgatgatat agatgagtgg
     7021 gatagtttgg cttttgtatc tgtgatggtg ctttataaaa atctttttac tttaaaaatc
     7081 acagccgaag acttgaaaaa ttgtcaaaaa gtaagtgatt taatcaattt agcaaagctt
     7141 gattaaaacc tttaaggttt taatctttta tcactaattc aaatttgtca cccacatctt
     7201 taaatataaa cactttattt ccacaaggat aagagatgga attttcttgc ataaaagatt
     7261 ttcttttttg ca
//
LOCUS       DARBAR010000082         7183 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.082, whole genome shotgun sequence.
ACCESSION   DARBAR010000082 DARBAR010000000
VERSION     DARBAR010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7183)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7183)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7183
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.082"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            233..946
                     /locus_tag="SB815_001321"
     CDS             233..946
                     /locus_tag="SB815_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HEG0907041.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
     gene            921..1112
                     /locus_tag="SB815_001322"
     CDS             921..1112
                     /locus_tag="SB815_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEG0907042.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWENYYIKAE"
     gene            1112..1654
                     /locus_tag="SB815_001323"
     CDS             1112..1654
                     /locus_tag="SB815_001323"
                     /inference="COORDINATES: protein motif:HMM:NF016750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEG0907043.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARI"
     gene            1703..3916
                     /locus_tag="SB815_001324"
     CDS             1703..3916
                     /locus_tag="SB815_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HEG0907044.1"
                     /translation="MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIV
                     VDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREE
                     AAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQ
                     MVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYE
                     WLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQ
                     QVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQW
                     RFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRS
                     IGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTD
                     IEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQE
                     KEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDL
                     VQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYL
                     TRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHF
                     TGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK"
     gene            3913..4554
                     /locus_tag="SB815_001325"
     CDS             3913..4554
                     /locus_tag="SB815_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG0907045.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            4551..5483
                     /locus_tag="SB815_001326"
     CDS             4551..5483
                     /locus_tag="SB815_001326"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HEG0907046.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRML
                     PASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            5650..6432
                     /gene="fdhD"
                     /locus_tag="SB815_001327"
     CDS             5650..6432
                     /gene="fdhD"
                     /locus_tag="SB815_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEG0907047.1"
                     /translation="MDPLFTTQILKYKGDESFTCNDTLVREIKLEIFINDEKVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKACLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIPV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            6425..7162
                     /locus_tag="SB815_001328"
     CDS             6425..7162
                     /locus_tag="SB815_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEG0907048.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
BASE COUNT         2503 a          883 c         1485 g         2312 t
ORIGIN      
        1 tattttattt tttcaaatat aaaatcaact caaatatcta attttcaata ctttggtatg
       61 attttttaat attttaaatc cttgtggaat tttattgaaa ttcagtgatt tttaaatcaa
      121 atagtattaa gataaatcga tttaaaaatc ggctttaaaa tgaatattag gtatattttg
      181 cataatattc attcaagcaa aatttaaagc tatttttgaa aattttgaat gcatgggagc
      241 tttaatggat ttggaaaaat taagattagc tagaagtctt tattatcaat gtctaggaga
      301 gctttttgtt ttttcatttt ctgaagaaag attgtcaaaa ttacaagagt atttaaagac
      361 aatgcaagaa tgtttatttg atgaaaattt aaaatcaaat tttgatatct tgcttaagca
      421 tttagatgat gaaaattcta tacaagcatt ttttaaagaa tatgatttgc tttttttaag
      481 tcttaaaaat agcattccaa cgactttttc ttacatagaa gaaggttttg aaaattcaaa
      541 tcctttactt tgcgtgcgtc aaattttagt caaaagtaaa ataagacgca atgaaaaatt
      601 ttttaaagaa agtgaagata gtgttggatt ttgtttattg ttgatgagtg aatttttaag
      661 gcaaaatgaa gatgatttag ccaaagagct ttttgaaaaa gtgatcaata aaagcattga
      721 tgagttttta ggcgatgttt tcatgaataa aaatgcgaat ttatataagg aaattgcaag
      781 tattgcatcg gcttttatgg aatttgaaag actttgcttt gaagtggaaa aacctgcaaa
      841 aataaattct aaaaaagtgc aaaacgatct atcgcgttca gaatttttaa gaagagaagc
      901 aaataaacaa aggaggactc gtgaaaaatc gcagggaatt tcttaaaaaa tccgcttttg
      961 ccttaggggc tgctggagtg cttggtagca caactttagc tctagctaaa gatgaagaaa
     1021 gaaaagattt agttaaaggt aaaagtaaga aaaaagaagt gctttttcaa agaagtgcta
     1081 attgggaaaa ttattatata aaggctgagt aatgtcaagt gtaggtgaaa atatcaagct
     1141 tacgcgtcgt tcttttctta aaatggcagc actttcaagc ctagcaacac cgttgcttgc
     1201 tagaagtgaa actttaagag aagcgagtgc tgatgagctt aaagaagctt atgaaggtag
     1261 taaaaaagta aaaacagttt gtacagcctg ttctgtaggc tgtgggatta ttgcagaagt
     1321 gcaaaatggt gtttgggtgc gtcaagaaat cgctcaagat catcctgtga gttcaggtgg
     1381 acattgctgc aagggatctg atatgatcga tatggtgcgt tcacatgtgc gtttaaaata
     1441 tcctatgaaa aaagaaaatg gagaatggaa acgcataagt tatgagcaag ctttaagtga
     1501 gatcggagaa aaactagctg cttatcgtaa agaaaatcct gaaagtgtta tgtttttagg
     1561 ttctgcaaaa cttaataatg aacaagctta ttatataaga aaatttgcag cattttttgg
     1621 aacgaacaat gtagatcatc aagctagaat ttgacacagc gcaacagtcg ccggtgtggc
     1681 gaatacattt ggttatggcg ctatgacaaa ccatcttgga gacatccaaa gaagtaaatg
     1741 tatcattatc attggagcaa atccagcggt aaatcaccct gtgggtttta gacatttctt
     1801 aaaagcaaaa gaaaaaggtg caaagcttat cgttgtagat cctagattta caaaaagtgc
     1861 agcaaaagcg gatatttatg caagaattcg tccaggaact gacattgctt tcatgtatgg
     1921 aatgttaaaa atcatttttg atgaaggctt ggaagataca aaatatcttg atgaaagagt
     1981 ttttggaatt gataaaattc gtgaagaagc agcaaaatgg acagttgaag aagtggaaaa
     2041 tgttacaggg atctctaaag aacttttggt gcaaatcact cacgaagtag ctaaaaacaa
     2101 accaactacg cttatttggg ctatgggttt aactcaacat actgtaggaa cttcaaatac
     2161 acgtttagca cctattgtgc aaatggtact tggaaatata ggtaaatttg gtggtggagt
     2221 taatatctta cgcggacacg ataatgttca aggtgcttca gatatggctt gtttgagcga
     2281 aaatttacca ggttattatc ctttaaatga agcgacttgg agatactatg ccaaaatttg
     2341 gggtgtggat tatgagtggc ttttaggaaa ttttgtaagc aaagattgga tgcataaaac
     2401 tgggctttca cttgctagat ggtgggcagc ggctttaaat ggaaaagatg gaaatgatgc
     2461 tatcgataat gcaggaacgc ctttaaaagc tttagtagtt atgggaaatg gtattacttc
     2521 gactgcacaa caagtaaaag ttaaagaagg tttggaagct ttagagcttt tagttttagc
     2581 cgatcctttt gtaaatgaag cagggattat tgcagaaaga aaagatggaa tttatctttt
     2641 acctgcagca acacagtttg aaacaagcgg aagtgtaaca gcaacaaatc gtagcggaca
     2701 atggagattt aaagttgtag atccacttta tgaaagcatg gaagatcaag aaattttatt
     2761 tgagcttgct aaaaaattag gtttttatga agactttacc aagactttac gcgatgaaaa
     2821 aggtgagatt gtttggcctg aaaatgcaac aagagaaatt gcaaaagcag ttagaagtat
     2881 agggcttaat ggttggagtc ctgaaaggct taaaaagcat actttatact gggataaatt
     2941 tgatgaggta actttagaag gaaaagacga agttgctggc gagtattacg ggcttccttg
     3001 gccttgttgg agtgataagc acccaggttc tcctgtgctt tataataccg acattgaagt
     3061 agcaaaaggt ggtatgggct ttagaaacaa ttttggactt gaatatgaag gagagagttt
     3121 acttgctaag aatgcacctt taaattcacc tattgataca ggttatccac aaattactaa
     3181 agataatata gaaaaagttt taggtattac tttaagtgct caagaaaaag aaaaaatggg
     3241 atcaacttgg tcttatgatg atagcaatat catagcaact aaatgtatag aaaaaggcat
     3301 agttccttat ggaaatgcta aagctagagc tgtagtttgg acttttaaag ataaaattcc
     3361 actccaccgt gagcctttac attctccaag aaacgatttg gtgcaaaaat atccaagttt
     3421 tgaagatcaa aaagcgcttt accgcgtgga tactaaattt gtttctgtgc aacaagctaa
     3481 ggattattct aaagaattcc cgcttaatct tgttactgca agacttgtga atttaaatgg
     3541 tgcaggtatg gaaaatagag catctatgta tctaacgcgt ttaacacctg aaatgttttg
     3601 tgagatcaat cctgaattag caaaagagca agacattaaa gcaggagata tgatttgggt
     3661 gcattctcca gaaggtacta aaattcatgt aagagtgaag gttaatccag gtgtagcaaa
     3721 agatatgatt ttcttgcctt tccattttac aggagttatg caaggcgtgg atttaacgca
     3781 caatttccca gaaggaacta agccttatgc aagcggagaa agtgctaata cggtaacaaa
     3841 ttatggttat gatatcatgt gtcagattcc agagactaaa ggtggacttt gtagaatcag
     3901 taaggatgga aaatgagtaa ggtaaatttt gcaaatttag aaaaagaacg cttgaaattc
     3961 ttttgtgata atgagcgttg tattgattgt aatggttgcg cggtagcttg tgatgaagca
     4021 catgagcttc ctattcatat tcgccgccgc cgtgtgatta ctttaaatga aggaattcaa
     4081 ggaaaagaag tttcaacttc tatttcttgt atgcattgtg atgatgctcc ttgttctatc
     4141 gtttgtcctg tggattgttt ttacatccgt gctgatggta ttgttttgca tgataaagaa
     4201 atttgcatag gttgtggata ttgtctttat gcttgtcctt ttggtgcacc acaatttcca
     4261 aaagatagtg tttttggaaa taaaggcatt atggataaat gtactatgtg tgcaggtggc
     4321 cctgaagcaa cgaattcaga aaaagaaaga gaactttatg gtcaaaatcg tatcgcagaa
     4381 ggaaaagtcc ctgtatgtgc tgcgatgtgt tcgacaaaag cacttttagt aggtgaaagt
     4441 tctaaaatag aagagattta tcataataga cttatgaata gaaattatgg cattccaaat
     4501 ccttcggaaa gtttggaatg gaagattgct tacacaggaa aggaacgctt atgagaaaag
     4561 tatttgtaac gcttttatta agcgtagtga gtttatttgc ttatggtagc gagagaatgg
     4621 gacaagatac tcaaatttgg gattttcatc gtattacaaa tatcccaaat tatgatactt
     4681 ttggcaaact ttggacaact ttgcaaggtg aatatatagc tactatagct ttaatcgctg
     4741 ttattgcggt attgtctgca tttgctttgc attatatggt tataggacct aagcaatttt
     4801 cacacgatgg aaagaaaatt tatgctttta cattatttga aagacttttt cattttatcg
     4861 cagcgatttc ttgggtgatt ttagtgccaa ctggttttgt gatgatgttt ggagaagttt
     4921 ttgggggtgg agtttttgta agggtttgta aaaatttaca cgcttttgca acgattttgt
     4981 ttatcatctc tataatccct atgtttttat gctggattaa aagaatgctt cctgcaagtt
     5041 atgatatcag atggatgatg atagtaggtg gttatttaag taaaatcaaa cgtcctgtac
     5101 ctgcaggtaa gtttaatttt ggtcaaaaat cttggtatta tatagctgta tttggtggat
     5161 ttttgatgat aattacaggt ggatttatgt attttcttga ttttaattcc acggcaattc
     5221 aaggtctttt tggtttaact caaattgaac ttttgagaat ttcagctata gtgcataatt
     5281 tcttgggtat agtgtgtgca gtgttttttg gtgtgcatat ttatatggca gtatttgcaa
     5341 tcaaaggtag tatccattct atgattagtg gttataaaga agaagaagag gtttatattt
     5401 tacattctta ttggtataaa gaattaagca ataaaaagca aattgaacct agtttttctt
     5461 atgatcctaa tgtgaaaatt taatctttaa ccgctatgtt attacatagc ggtagtttta
     5521 agcttttttg aaataaatag aacgaatttt cttttataag ttgaatttaa aatctatttt
     5581 tccatatata aatttgttat ttatgttttt ttgatataat attatttaaa gatatttaaa
     5641 ggataaggta tggatccgtt atttacaact caaattttaa aatataaagg tgatgaatct
     5701 tttacatgca atgatacttt agtgcgtgaa attaagcttg aaatttttat taatgatgaa
     5761 aaagtaggtg ctttaatggc aactcctgta gatgaacagg cattagcaat aggatattta
     5821 atgagtgaaa atatcattgc gaaagtaagc gatattgaga gcatagaaac aaaagatgat
     5881 ggtatgagtg tgcatattaa agcaaagatt gataaagaaa atttagcaaa gcttaatgct
     5941 gaaggtgtag ttataagtgg ttgcggtaga gcacatactg ccaatatcga tccagaagct
     6001 attgaagcga gtaaaattag ttctgatgca aaatttagca aagatgaaat tttaaaacaa
     6061 atgagtactt tttatactca atgcgagctt tacgagaaaa caggctgtgt acatacggct
     6121 aagctttttg tagatgagaa aacttttttt ataggtgaag atatagctca gcataatacc
     6181 atagataaag ctttaggaaa agcgtgttta gctggggttg atttaagtca atgtttttta
     6241 atggttagtg gaaggctaag ttctgaaatg gtagctaaag cagttatgca taaaattcca
     6301 gtgcttgttt cacgcacggc tcctacttgt ttaggggtta tgatagcaag aaaatttgat
     6361 ttaacgcttt gtggttttgc tagagaaaat aagatcaata tttatagtgg agaatttaga
     6421 attcatggat aaaaatcaag aaaaagaaat catctcatat atgagagaat tgttaaatag
     6481 caatgaaaaa ttagattgtg gtacggcttt taaaattgca aagaaattta atataaatat
     6541 agaaaaaatc ggacaattag ccgatgaaaa tcacatgaga attgataatt gcgagttggg
     6601 gcaatttgga catttagatt ttgaaaaagc aaagattgaa gtgcttaaaa aaatagaacc
     6661 tagtttagat gaaaagcgta gaattttttg taaagatgca agagatattg ctaaagaagg
     6721 ttgtggactt aaaagtatgc gttcagcttt aaaaacttat aaggttgatg taaagtattg
     6781 tcaacttggt tgttttaaag aaaaaaaagg taagcaattt atagtaagaa caaaaacttg
     6841 gattgaaaat gcggatggag atttgctttt tggtcgagga aaaacagaac ttttagaact
     6901 tatcggacaa acaggtagtt tattacatgc ttctaaactt atggggatta attataaaaa
     6961 agcttggatg catttacaaa ccttacaaaa aaattctcaa gaaattttag ttagcacaag
     7021 acaaggacgc tctaaagaat caggaacaaa acttactcct agagctatgg aattgatgga
     7081 aaattactct attttgcaaa aagacataga agaatacgct aataaacgct ttaaagaatt
     7141 gtttttaaaa ggaaaaaaat aaatcttcta tcaaaaaata cta
//
LOCUS       DARBAR010000083         7144 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.083, whole genome shotgun sequence.
ACCESSION   DARBAR010000083 DARBAR010000000
VERSION     DARBAR010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7144)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7144)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7144
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.083"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..2610
                     /locus_tag="SB815_001329"
     CDS             <1..2610
                     /locus_tag="SB815_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEG0907049.1"
                     /translation="LKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIR
                     ILLFGEEIESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDAL
                     IHDINSLGFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSS
                     YNKDFFEFHKNKKITLLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQ
                     KEKQKTRKKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSDK
                     LLLPVENLYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAAKRS
                     LVQAKKITVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGK
                     TEVAMNAIYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEK
                     KQVLQNLKENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHIL
                     SMSATPIPRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELRRGG
                     QIFYIHNHIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLLLST
                     SIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDA
                     LKRLVSLESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELN
                     ALSKNEVDQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIESEI
                     EDRFGKLDIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDD
                     DILEAILTHLRKA"
     gene            2612..3373
                     /locus_tag="SB815_001330"
     CDS             2612..3373
                     /locus_tag="SB815_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0907050.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            3370..4056
                     /locus_tag="SB815_001331"
     CDS             3370..4056
                     /locus_tag="SB815_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEG0907051.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKAKRLKGLVESIINTY
                     ENLENFKTNVSRKWLLNIKGLGFESVDGILNYLCKREILVVDSYSLRLAFHLGYEFEN
                     YEELREFFQSGIESEQENLCKILGRKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            4053..4865
                     /gene="thiD"
                     /locus_tag="SB815_001332"
     CDS             4053..4865
                     /gene="thiD"
                     /locus_tag="SB815_001332"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEG0907052.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNIVIDPVMFAKNGYALMPQENCDFFKQTIVKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGAKAVLLKGGHSEINANDVFYDGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            4855..5487
                     /gene="thiE"
                     /locus_tag="SB815_001333"
     CDS             4855..5487
                     /gene="thiE"
                     /locus_tag="SB815_001333"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG0907053.1"
                     /translation="MKNKLDLSLYLVATKGSKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            5465..6094
                     /locus_tag="SB815_001334"
     CDS             5465..6094
                     /locus_tag="SB815_001334"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEG0907054.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIHPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLNCVKLAKTLV"
     gene            complement(6091..6543)
                     /locus_tag="SB815_001335"
     CDS             complement(6091..6543)
                     /locus_tag="SB815_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907055.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQAKQENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLSKDGVIIAHISIALNRDKNVNDEILLTKSIIIYPKENFWNLKN"
     gene            complement(6540..>7144)
                     /locus_tag="SB815_001336"
     CDS             complement(6540..>7144)
                     /locus_tag="SB815_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907056.1"
                     /translation="TSLLSKPLMDFYHLNFTALHTNNLITQAHLNLLKIEKLIQNCIN
                     ITFSQNTLKCLLKDELISLKDNKLYLINSALILENNHTLYSPHSDFKTQLQNRKDLYN
                     DNEHISYAYKINKIEKISILENGISANFTGSFIPLQAQLVIKLQNEELIYEIKPKFNE
                     QLNQQGLISKNISSFNLQNNKLKICLKRQTKHCLEKRILL"
BASE COUNT         2591 a          801 c         1303 g         2449 t
ORIGIN      
        1 ttgaaatgtt ttgaagatga aatttcaaga ttgggatacg aatttgtaga tatagttcag
       61 gataaaggtg aaatttcaat tcgtgcggat attattgata ttttttgtat caatgaagaa
      121 aatcctatta gaattttact ttttggcgaa gagattgaaa gtataagata ttttgatttg
      181 caaagtcaaa agtctattcc taacgaacta gaacattttg aaatttgtcc ttttttaaaa
      241 tattttgaca aagaaaatta tgaaattttt aaggacaaat tagaagattt tcaaagcgat
      301 gctttaatac atgatatcaa ttctttaggc ttttggtgta ttgatgattt ttttgattat
      361 ttagaacttg attttttagc ttgtgaaaag tttgatatta atgaatatga aaaagatata
      421 agttttgtga atgcaaaaat tttacctcaa gctaaaaaat ttaaagaatt gcaaagttct
      481 tacaataaag atttttttga atttcataaa aataaaaaaa tcacactttt agctaaaaac
      541 gaagctttat ttaaagcttt agagcttgaa gatactcaaa atatccattt tgtaaaaagt
      601 gatttaaggc ttaatcttat tagtcctgaa gagctaatta tttctttaaa tcaaaaagaa
      661 aaacaaaaaa caagaaaaaa agctagtttg attatagatg agcttaaaaa tggggattat
      721 atagtacacg aagattatgg ggtaggtaaa tttttaggtc ttgagatgat agtgataagc
      781 ggagcaaaaa aagagtttgt tgctatagag tatcaaaatt ctgataagct tttattacca
      841 gtggaaaatc tttatttgat tgataaatat ttgggcgtga gtggatctat tccaagctta
      901 gataaactag gtaaaacaag ctttattaaa cttaaagaaa aattaaagac taaactttta
      961 gccatagctt ctgaaattgt tattatggcg gctaaaagat ctttggtgca agcaaaaaaa
     1021 attacagtgg atttaaatag acagactgat tttatagcta gtgcgggttt tatttataca
     1081 agcgatcaag ataaagcctg tcatgaaatt ttgcaagatt ttcaaagtgg aaaagtcatg
     1141 gataggcttt taagcggtga tgtgggtttt ggaaaaacag aagtcgctat gaatgctatt
     1201 tatccagtag ttaaaagtgg attttgcgca tttttatttg cgcctacgac tttgctttct
     1261 catcagcatt ataaaacctt aaaaaagcgt tttgatcctt ttgatataaa ggtttttaaa
     1321 ctggatcgct ttacaagtag tgcagaaaaa aaacaagttt tacaaaattt aaaagaaaat
     1381 aaagcttgtg tagttgtagg aactcatgca cttttaagtg tagaatgtga aaatttagcc
     1441 cttgttatta ttgatgaaga gcataaattt ggagtgaagc aaaaagaaaa gcttaaagaa
     1501 atcactcaaa attcacatat tttatccatg tcagcaaccc ctataccaag aagcttaaat
     1561 caagctttaa gttctataaa atcttatagt gttttgcaaa ctccaccaga agatagaatg
     1621 gatgtaagaa cttttgtcaa agaaaatgat gacgcacttt taaaagaagc tatagcaaga
     1681 gagttaagac gtggtgggca aattttttat attcataatc atattgcaag tatagagcaa
     1741 tgtaaaaagc atctattaga acttttttct actttgcgta ttttgatttt acattctaaa
     1801 atcgatgcca agatgcaaga agaagaaatg ttgaaatttg aaaacaaaga atatgatttg
     1861 cttttaagta cctctatcgt agaaagtggg attgatttac caaatgcaaa tactatcata
     1921 gtagaaaaaa gcgatcgttt tggcatggct gatttgcatc aattgcgtgg gcgtgtagga
     1981 agaagtgata agcaaggtta ttgttatttt ttaattgaag ataaaaatgc tatcacaaaa
     2041 gatgctttaa agcgtctagt ttccttagaa agtaattctt ttttaggcgc aggttctatt
     2101 ttggcttatc atgatcttga aattcgtggc ggtggaaatt tattaggcgt agatcaaagt
     2161 ggacatattg agcaaattgg atatagttta tatcttaaaa tgttagaaga tgaacttaat
     2221 gctttaagta aaaatgaagt ggatcaaaaa gaaaataaac ttgatttaaa actcaatgtt
     2281 aatgcctttt taaacagcga acttatcagc gaagatcgct taagattaga actttataga
     2341 agacttagca agtgtgagca agttcatgag gtttatgaga tcgaaagtga aattgaagat
     2401 cgctttggaa aacttgacat ttatactaag caatttttat ctttgattac tattaaaatt
     2461 ttagctttaa ataaatttaa aagcattagt aactatgagc aaaatattca atttactgct
     2521 ttaaatgatg aaaaagaact catcaaggca aaaagcaaag atgatgatga tattttagag
     2581 gcaattttaa cgcatttaag aaaggcttaa aatggattgg aataaaactt atgcagcaat
     2641 ttatagagca agaaaagatt atttaaagcc tatttttgaa atcgatccta ttgctttaaa
     2701 agatttagta ggtatggaaa gtcaaaaaaa agcactttat gaaaatactt taaatttcat
     2761 tcaagataag ggagcaaatc acgcactttt atggggatct aagggcactg gaaaatcaag
     2821 tttaattaaa gctatattta atgaatttaa agaacagggc ttaagacttg tcgaattaaa
     2881 taaagaagat ttatttgcct tagcagatat catcgatgaa atcagattag aaaattttaa
     2941 attcatactt ttttgtgatg atttttcttt tgaaaaggga gatgatagtt ataaattttt
     3001 aaaaccttta cttgagggaa gcatagaaaa agccccaaat aatgtaatta tttatgcgag
     3061 ttcaaatcgt aggcatttat taagtgaaag cattactgat aatcttgata cgcaaatcac
     3121 acatacagaa cttcatttaa gcgatgctgc tgaagaaaga ttaagcttga gtgatagatt
     3181 tggtttgtgg ttaagttttt atcagggaaa tttagaagag tatttaaaga tgatagattt
     3241 ttattttaaa gattattctt gtgataaaga gcttttgcac gctaaagcta aagaatttgc
     3301 tactctaaga gcaagtagaa gtggtcgtac cgcaaagcaa ttttatttag cttttaagga
     3361 gaattttaaa tgactggagc acaaattttt accaagcttt taaatttgga tttaaattat
     3421 catgattttg attggcttga aaatcaagga ttgagtgaat ttgagctttt aatttctgtc
     3481 gttttaactc aaaatacaaa ttggaaaaat gtcttaaaag ctttagaaaa tttaaaaaaa
     3541 gaaaatattg caagcttaga acaaatcaat actttatcca atttagaact tgcaacttta
     3601 atcaagccta gcgggtttta taataccaaa gccaagcgtt taaaaggctt agtagaaagt
     3661 atcataaaca cttatgaaaa tttagaaaat tttaaaacaa atgtaagcag aaaatggctt
     3721 ttaaatatca aaggtttggg ttttgaaagt gttgatggga tattaaacta tctttgcaaa
     3781 agagagattt tggttgtaga tagttatagc ttgcgtttgg cttttcactt aggttatgag
     3841 tttgaaaatt atgaagaatt aagagaattt tttcaaagtg gtatagagag tgagcaagaa
     3901 aatttgtgta aaattttagg gagaaaatgc gaactttacg aactttatca aatttttcat
     3961 gctttgattg tagcttttgc aaaacagagt tttaaaggac aaaaattaag ccctaagggt
     4021 gaagaatgga ttaaaatttt aaaggaagat ttatgaaagc aaaaggaagc gaacttatac
     4081 ctgttttaac tatagcagga agcgattgta gtggtggagc ggggatacaa gccgatctta
     4141 aaacctttag tgcgcacaat ctttttggta tgagtgtggt tttaagtgta gtagctgaaa
     4201 ataccgcaag ggtgatttct gtacacgata tacctactca aagcgtagat gaacaaatgc
     4261 ttgccgtatt tgaagatata gtgccaaagg caactaaaat cggaatgata ggttcttgtg
     4321 aattaatgag ctgtgtagct aaaaatttaa gcgagtttaa acctcaaaac atagtgatcg
     4381 atcctgtaat gtttgctaaa aatggctatg ctttaatgcc gcaagaaaat tgtgattttt
     4441 tcaagcaaac catagtaaaa tttgcagaca ttcttacgcc taatattcct gaagcagagt
     4501 ttttatgcgg ttttaagatc gctaatgaag agcagatgat aaaagcagct aagcatttat
     4561 gcagcttggg ggctaaggcg gttttactta aaggcggaca tagtgaaata aatgccaatg
     4621 atgtgtttta tgatggaaaa gaaatttata ttttaaaagg cgaacgcata gaaactaaaa
     4681 atactcacgg tacaggttgt acgctttctt cggctattgc tagtaattta gctaagggca
     4741 aggatttatt tcacgctgtt agtgaagcta aagagtatgt aagaaatgcg atttattatt
     4801 cacttaatct tggaaaaggt tgtggtccta caaatcattt tttcaagttt ctagatgaaa
     4861 aataaattag atcttagcct ttatttggtt gctactaagg gaagtaaaag cgaggagtgt
     4921 tttttaaata ctttagaaaa tgctataaaa ggcggagtaa gtatcataca acttcgtgaa
     4981 aaagagctta atgcaagaga attttataaa ctaggcttaa aggtgcaaaa actttgcaag
     5041 tcttataaaa tacctttttt gattaacgat agggtggata tagctttagc cttagatgct
     5101 gatggggtgc atttaggaca ggaagattta gaagcaaaat tagctagaaa gcttttagga
     5161 gatgaaaaaa tcataggctt aagtcttaaa aagttagaac aacttgagtt tatacaagga
     5221 gtaaattatc taggttgtgg agctattaag gcaacgccta ctaaagaaag ttcgctttta
     5281 agccttgagc ttttaagtca aatttgtgat aaaagcccta taggggttgt agccataggt
     5341 gggattgaca aagaagcact tgttgagtta aagggtataa atttaagcgg tgtggctgtg
     5401 gttagggcga tcatggatgc taaagatgct tttttggcag ctaaagagct aaagcgtaaa
     5461 atctatgaaa atttatctct taaatgaaac tccttttgaa ggggtggaaa atcttatttt
     5521 aaatgagatt gttttttatg attttagtgt ggatttgagt ttgtatgatg ctttaatctg
     5581 cacttcaaaa aatgctttaa aagctttaca acatgcaaaa atcactttaa atttcaaact
     5641 caatttatac gctgtgggac aaagtacagc tcaatacgct aaaaatttag gttttaaaaa
     5701 gattaaaatt ccatcaaagg cttatggaaa agatcttttt cttgaattta aagaggagtt
     5761 aaaaatgcaa aaatgtttgt atctaagggc taaaaatatt gtttcaactt taaatttgga
     5821 tcttaaaaat gtaggtgtgg atttagatga aatgattgtt tatgaaaatg tttttaaaaa
     5881 aggcgacaaa aagcttatcc atcctgctat ttttatattc acctctcctt taagtgtaga
     5941 aaatttttta aaattttaca gcttaaaaga agaagataag gttgtagtta tagggcaaag
     6001 cacagcaaag aagcttttaa attttaaaaa tctttatata tgcgaaaatc aaagtctttt
     6061 aaactgtgtt aagctcgcta agactttggt ttaatttttt aaattccaaa aattttcttt
     6121 gggataaata ataatgcttt ttgtgagtaa aatttcatca ttgacgtttt tatcacgatt
     6181 taaagcaata ctaatgtggg ctataataac accatctttg cttaaatttg catcgggatt
     6241 gaagttggaa aatttaaaat taacacattg tgcaatagga taaaaatatt ttattttaat
     6301 caaagctttt gtgtaattaa aatatatatt atctaaacat tctttatttt cttgctttgc
     6361 ttgatataaa aaatatttag aaaattgtgt tgcattgtga cttaaaattt gagcttgaag
     6421 gtagtaataa ctatcttgga ttatttttgg agtatagctg gatatgttta aggtcaagct
     6481 catccataga cttattagca gtattaaaaa aattgtccaa attaaaacat aagctttttt
     6541 cacagtaaaa ttcttttttc aaggcaatgt tttgtttgtc tttttaggca aatttttaat
     6601 ttattgtttt gcaggttaaa tgagcttatg tttttagaaa ttaatccttg ttggtttaat
     6661 tgttcattaa attttggctt tatttcatat ataagttctt cattttgcaa tttgataact
     6721 aattgagctt gcaaaggaat aaaactacct gtaaaatttg cagatatacc attttccaag
     6781 atagatattt tttcaatctt attaatttta taagcatagc taatatgttc attgtcgtta
     6841 tataaatctt ttctattttg gagttgtgtt ttaaaatcag aatgaggtga ataaagtgta
     6901 tgattatttt ctaaaataag agcagaatta ataagataaa gtttattatc ttttaggcta
     6961 attaactcat cttttaaaag acattttaat gtattctgtg aaaatgtaat attaatacaa
     7021 ttttgtatta atttttctat tttaagcaag tttaaatgtg cttgagtgat aagattgttt
     7081 gtatgtaaag cagtaaaatt taaatgataa aaatccatta aaggttttga aagtaagcta
     7141 gtta
//
LOCUS       DARBAR010000084         7043 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.084, whole genome shotgun sequence.
ACCESSION   DARBAR010000084 DARBAR010000000
VERSION     DARBAR010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7043)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7043)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7043
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.084"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            151..1386
                     /locus_tag="SB815_001337"
     CDS             151..1386
                     /locus_tag="SB815_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEG0907057.1"
                     /translation="MNAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCF
                     IVFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMM
                     FALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAG
                     GGVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGE
                     MNDIAINAFIVSIISAACGFLSWVVLEWLIHKKPTILGGLSGLVAGLVGITPACGYVD
                     IYASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGLFASAKVN
                     PNVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEE
                     VEQKGLDVSLHGEKAYTLA"
     gene            complement(1446..2357)
                     /locus_tag="SB815_001338"
     CDS             complement(1446..2357)
                     /locus_tag="SB815_001338"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEG0907058.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLSDFN"
     gene            complement(2354..3232)
                     /locus_tag="SB815_001339"
     CDS             complement(2354..3232)
                     /locus_tag="SB815_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEG0907059.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDIFYDDLDKFLNQNNDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNLKEID
                     EISNLAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISDVGIL
                     QDLAVHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNST
                     QKLRKIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLA
                     STSDAYKVQEILERFA"
     gene            complement(3237..4310)
                     /locus_tag="SB815_001340"
     CDS             complement(3237..4310)
                     /locus_tag="SB815_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HEG0907060.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGAKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRVLDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFKAVQKAITPKTKAVIAVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQINPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            4425..6953
                     /gene="alaS"
                     /locus_tag="SB815_001341"
     CDS             4425..6953
                     /gene="alaS"
                     /locus_tag="SB815_001341"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEG0907061.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDKLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLENTPFYATSGGQSADSGFIAKREVL
                     DTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            6953..>7043
                     /locus_tag="SB815_001342"
     CDS             6953..>7043
                     /locus_tag="SB815_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HEG0907062.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYD"
BASE COUNT         2331 a          971 c         1291 g         2450 t
ORIGIN      
        1 ttttttaaaa tacctattta tagtaattta agataaaaaa ataaattttg ataaaaaaaa
       61 tatataaaat atttcttaaa tttatatttt tttaaatcat tttaaatata attatctcgc
      121 aattaaattt ttgtaagaaa ggacaggtaa atgaatgcga taaattcaag ttttattgtg
      181 ttgtgtactt tgctagtttt gcttatgact ccagctttgg caatgtttta ttcaggtatg
      241 gtaagaagta aaaatactct taatactata atgaattgct ttattgtttt tggtgttatt
      301 actttacaat gggtagtgct tggatttagt ctttcttttg gtaaagatga aggacttggg
      361 cttgtaggaa atttcgagaa tttcctctta gagggtatta gcggatacaa cgcttcaggc
      421 gttccaaata ttctttttgt gatttttcaa atgatgtttg cacttattgc atctgccatc
      481 ataacaggct ctttggtggg aagaattaaa ctgggtgttt tggtgatatt tctacttttt
      541 tggagtactt tagtttatga tgtgttagca catatgattt ggagcagtga gggatttttg
      601 cttaaaagag gaagtcttga ttttgctggg ggcggtgttg tgcatattag ctctggggtt
      661 gctggacttg taggagcttt gatggtaggc gctagaaaaa gtgatgatga ggataaaaac
      721 gcgcattcta ttccttatgc tttcttaggt gcgattttgc tttttatagg atggttaggt
      781 tttaatgctg gaagtgctgg cgaaatgaat gatattgcta tcaatgcttt tatagtaagt
      841 attatatcag cagcttgcgg ctttttatct tgggtggtac ttgagtggct catccataaa
      901 aaaccgacta ttttaggtgg acttagtggg cttgtagcag ggcttgtggg aattactcca
      961 gcttgcggtt atgtagatat ttatgcttct cttgttatag ggactttgtc ttctgtgttt
     1021 tgttattttg gtttaagttt tattaaatac aaactcaaat gggatgattc tttagatgcc
     1081 ttttctttac atggaatcgg aggtatttgg ggaggaattg ccacagggct ttttgcaagt
     1141 gctaaagtaa atcctaatgt gattgcccaa aatgcacttg gcgagggatt ttttatcagc
     1201 ggaagtttgg aacttttaaa agagcaaatt tttgctattg tgatttgtgt ggttttgtca
     1261 gctcttataa gctttgttat ttttaagatt atctcttgtt ttacagactt aagagtaaaa
     1321 gaagaagtag agcaaaaagg cttagatgtg agtttgcacg gagaaaaagc ttatacttta
     1381 gcttagttgg ctaaattttt actaaaaagt ccttgtaatc ataaacaagg acttcaaaat
     1441 cattcttaat taaaatcaga caaatacttt aaaataaagt ggataaattc atcactatca
     1501 tttgggcaag tgattaaatc ataatcgcac tttgctaaat gtttatactc catacctagc
     1561 tcaaaaatcg tttcagaaca atcaatgcaa aaagaaatag ggtaaatcag agctttatcg
     1621 tttaaatttg ccaaaacatc gcttgtattt ggttcaagcc attttacagg gcctagttta
     1681 gactgataag ctaaaataaa ttcatcaaaa tgatctttta gcttttcttt taaaatttct
     1741 acatgatcat ttacatgctt ttcatataaa tcacctttat caataatgct ttgtggtaaa
     1801 gaatgcgctg aaaaaatcaa aattttggca tcaaatttac tttttttagc caaaatgtgc
     1861 gaaactatca tctcgttata aagctcattt ttgtaaaaaa tatctatagt ttttactttt
     1921 gcttgaattt tttgctttga aatttcattt tgcagaactt ctaaagatga agttactgtg
     1981 gtgcaagaat ggtgcggata aagtggaaaa agaatgattt catcacttgc atttaaagtg
     2041 tatttttgca aaatttctgt ggcaaaagga ggaacataaa gatttacaaa atcaaattta
     2101 aattcatctt gttttaaatt aagcttgtca cacaggcttt gagtaagttc gtttaaaggg
     2161 gattttccgc ccattttttt atagttttct tgcatggctt taacgcgagc ctttgttatg
     2221 atccatgcta caaattttct taaaaatcga tttttgattc ctaaaatata aggatcatta
     2281 aacatatttt ttaaaaaaac ttcacaatct tgtaaattcg tagctccgcc catatttaaa
     2341 aataaaacta atttcacgca aacctttcta aaatttcttg aactttgtaa gcatcgctcg
     2401 tgctggctaa atgattgggt tgattatcga taagttttaa caaagcttcg tgttctgaaa
     2461 aaagtggact ttgttgagta agttctataa aatttccatc ttttaataaa gaaaagtcat
     2521 ttaaattggc ttcataaaaa tgatttttag taataagatg aatttttctt agtttttgtg
     2581 tgctattcca actttgatgt atgctagcaa tacatttttc aagctcacat agaataatgc
     2641 tttcactttc tcttgtttga tcttgggtgt attttttaag caaattggtt tttgttattt
     2701 cttgtttgct taaaaaacaa agcaaatcaa gatcatgcac agccaaatct tgcaaaatcc
     2761 ctacatcgct gattctttgt gggtagggtg aaaatctttg tatgttaatg ctgataattt
     2821 cttcattttc aagctctttt tttagggcta aaaccgcagg attaaatctt tcgcaaaaac
     2881 ctacacctac ttttatgctg tattctttag ctaaatttga aatttcgtct atttctttta
     2941 aatttagagc taaaggcttt tcgattaaaa cgcatttgca ttgtttaaaa actttttttg
     3001 ctattgttaa atgtgaattt gtaggtgttg ctatgatgat aatatcatta ttttgattta
     3061 aaaatttatc caaatcatca taaaaaatat cataaaaaat atcatcaaaa atatttaggt
     3121 ttggattttt gcaaagatca aaaagtgcat taagtttaaa atgagaattt ttactaagtt
     3181 catttaagtg gttttgcccc atttttccaa ggcctatgat acctattttc atggaatcaa
     3241 tctttaaaaa tacaaataac ttgctcttgc tcttcttcac ttaaaaaagg tgaaaaaggc
     3301 aaagataaga tgtgttcgct tgcgtattct gaatttttaa gttctaaatt tgaaaactca
     3361 ctaaagcaag gttgtttatg caaaggggtt ggatagtgta tagcataagg tatattagct
     3421 ttttcaaatt tttgcaatac actagctcta tcttcaacta aaacgctgta ttgtgcataa
     3481 gcactaaaag catttggatt aatttgtgga atttggcagt tttttaaatt tgcattataa
     3541 atttgtgcta atttttgtct tttgtctaat tctttttcta ggtattttaa cttaacattt
     3601 aaaatcgctg cttgtaaggt gtcaaggcgt ccatttatac ctataaattc atgtttataa
     3661 cgctgagttt gtccgtgatt gagtaaaatt cttatttttt tagcaatttc atcatcatgg
     3721 caaaaaatag ccccgccatc gccataagct cccaaaggct tcgaaggaaa aaagcttgtg
     3781 catgaaattt tagctataga gcaggatttt tctcctttga aacttgcgcc aaaactttgt
     3841 gcaccatctt cgatcaaagt gatattttta tcttttaaaa tttcttctaa agcccttaaa
     3901 tcactcattt gtccaaacat actcactgct ataacagctt tagtttttgg agttattgct
     3961 ttttgcactg ctttaaaatc aagattgtaa tttgataaat ttatatctac aaaaacaggt
     4021 tttgcaccta ccaaggccac aacttcagct gttgctatga aagtaaaact aggcactata
     4081 acttcatcat ctttaccaat atctaagact cttaaggcaa ggtataaagc actagttcca
     4141 cttgagcaac ctatagcgtg tttaacacct aagaaatgag ctaaattttg ctcaaattcg
     4201 ttaagctttg caccgcctat gaaagaagag cttgataaaa cgctttcaat ttcagcattg
     4261 atttcatctt tgtatgcgag atattgggct tgaagattga taaaattcat aaaaaacctt
     4321 agagaaataa aattaaataa aaatgtttat tgtattttag ttttacttaa tttaaagtaa
     4381 ttttggtatg atatgttttt ataaaaattt ctttaggaaa attcatggat attagaaaag
     4441 cttatttgga tttttttgca tcaaaaggac atgagataac cccgtcaagt cctttagttc
     4501 ctgatgatgc aactttactt tttaccaatg cgggcatggt gccttttaaa agtatattta
     4561 caggagaaat tccacgccca aaccctccac gcaaaacaag ctgtcaaact tgtataagag
     4621 caggtggaaa gcacaatgac ttagataatg ttggctatac cgcacgccat catacttttt
     4681 ttgaaatgct tgggaatttt agttttggag attattttaa agaacaagcc atagcttatg
     4741 cttgggaatt tgtaactgaa gttttaaaac tacctaaaga taaactttat gtaaccgtgc
     4801 atgaaaacga tgatgaagct tttaatctat ggcaaaaaca cattcaaaaa gaaagaattt
     4861 acaaatttgg cgataaagat aacttctggc aaatgggcga tactggtcct tgtggtcctt
     4921 gtagtgagat tttttatgac caaggacaag agcattttaa ctcaagcgaa gattatatgg
     4981 gcggagatgg agatagattt ttagaaatct ggaatcttgt ttttatgcaa tacgaaagaa
     5041 gtgctgatgg agtgcttagc ccactgccaa agccaagcat tgatacagga atggggcttg
     5101 aaagggtaac agcgattaaa gaaggtaaat ttagcaattt tgatagctcg ctttttatgc
     5161 caatcatcaa tgaaatttca aaactttgta ataaaactta tgtttatgaa agcggagcaa
     5221 gttttagagt catagctgat catataagat caagtgtatt tttacttgca caaggggtaa
     5281 gttttgataa agaaggtagg ggttatgttt tgcgtcgtat tttgcgtcgt gctttaaggc
     5341 atggatattt gctaggtttt aaacaagctt ttatgtataa actagttgat gttgtgtgcg
     5401 atttaatggg cggacattat acctatctta atgagaaaaa agactttata aaagaacaaa
     5461 ttcgccttga agaagaaaga tttttaagca ctatagaaaa tgggattgaa atttttaatg
     5521 aagagcttaa aaacactaaa gaaattttta gcggagaagt agcctttaag ctttatgata
     5581 cttatggttt tccgcttgat ttaacggctg atatgctaag agaaaaaaat cttaaagttg
     5641 atgaagaaaa atttgaactt ttcatgaatg agcaaaaagc acgcgctaag gcttcttgga
     5701 aaggaagtgg agataaaact gcaagcggag attttaaaaa cttacttgaa aaatttggag
     5761 aaaatcattt cgtaggttat gaaaaagcag aatgcgaaag taaaatttta gcccttttag
     5821 atgaagattt taaagaagtt tccaccctta aagatgcggg ttgggtgatg cttgaaaaca
     5881 caccttttta tgcaacaagt ggggggcaaa gtgctgatag tggatttata gctaagcgtg
     5941 aagttttaga tacgcaaaag ttttttaatc tcaatcttag ctttataaaa gcaggcgaag
     6001 aactaaaagt taacgatata gttcatgcaa gaatcgatac agaaaaaaga gagcaaatcg
     6061 cacgccacca ctcagccact catcttttac atcatgcttt aagagaaatt ttaggttctc
     6121 atgtaagcca agcaggatct ttggttgaaa gcaataaact aagatttgat tttactcatc
     6181 ataaagcttt aaacaaagaa gagctagaaa gcattgaaaa aagagtcaat aaaatgatta
     6241 taaactcaag cgaagctatc ttagaaaata tgcctttaga agaagctaaa aaaagcggtg
     6301 ctatagcatt gtttaatgaa aaataccaag gcaatgtgcg tgttttaact ctaggtgaaa
     6361 gcaaagaact ttgcggggga actcatgtta aaaatactgc tcaaatagga agtttttaca
     6421 tagttaaaga aagtggtgtg agtgctggag ttagacgtat tgaagctgtg gtttctaaag
     6481 cggctttaga atttgtaaaa aatcaactcg aagaactttc taaagtaaaa gatgaactta
     6541 aaaataatga tattttaagc gggattaaaa agcttaaaaa tgaaatttta agtttaaaaa
     6601 atgagcttaa aaattcaagt aaaaccgagc ttgattctaa aaatatccaa ggtgttgaaa
     6661 tttgcgtaaa acgtatagat aatggcgata ttaaagctat gattgatgat tttaaaaaca
     6721 aatttgctaa agcggtgatt ttacttatcc aagtaaaaga tgaaaaaatc actttagcag
     6781 ctggcgttaa agatgtgcct ttaaaagcag gagctttggt taaagaagcg gcgcaaattt
     6841 taggtggaaa tggtggcgga agagatgatt ttgctactgc aggtggaaaa gatttaagca
     6901 aaatcaatga agctttaaaa caaagcttag aaacgataga aaaagcactt taatgttaat
     6961 tcttgcttca agttccattt caagagctaa cttgcttaaa accgcaaaga ttgattttag
     7021 gcaagttagt tttgattatg atg
//
LOCUS       DARBAR010000085         7030 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.085, whole genome shotgun sequence.
ACCESSION   DARBAR010000085 DARBAR010000000
VERSION     DARBAR010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7030
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.085"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..1288)
                     /locus_tag="SB815_001343"
     CDS             complement(<1..1288)
                     /locus_tag="SB815_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG0907063.1"
                     /translation="MQNLLLYIKNNLTPTLAQILLQALKNSNNEKFFTFVLENIETIC
                     TWLNSNEFRDRYLSTKHPYPPLINPNFIEIDSSRHCAELAWDLNLPLPKHYKFIYISP
                     HGVGAAAFLRYLNQCCDVTCFASWVLPPDSKERYCINYMCLNDNTIAQYAINISEINL
                     PYFDKYLSLLDFNSKIICGVRDPIGLLKHSWGRDWSKVLRNYPPEFNLTYDWRYYINY
                     LTHQNHKIKIDINELQQGVFIISYLLKYFNKDNVYYLDMEEIRQSKAFDTMNLLAINF
                     NFTPPHKDKLDLFKIKEFRGYIRYLFPITLYANSKDINNTFYLNTPKNNKNFNIDKTS
                     SIPIILDRKHINHEKIDIIQEIIKNDLCNDMGVYIDKNDFKQLEQNNLLFSTIKHYLY
                     DFLYQIKITIDETESKMMKEKDVIDYFIKNKSLVYTF"
     gene            1434..2507
                     /gene="ispG"
                     /locus_tag="SB815_001344"
                     /gene_synonym="gcpE"
     CDS             1434..2507
                     /gene="ispG"
                     /locus_tag="SB815_001344"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEG0907064.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
     gene            complement(2537..3235)
                     /gene="flgH"
                     /locus_tag="SB815_001345"
     CDS             complement(2537..3235)
                     /gene="flgH"
                     /locus_tag="SB815_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HEG0907065.1"
                     /translation="MKKVLFYVLPFVFFGCSATVDPQISMKPPAYVEELAPKQSNNIE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            3325..4830
                     /gene="pta"
                     /locus_tag="SB815_001346"
     CDS             3325..4830
                     /gene="pta"
                     /locus_tag="SB815_001346"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEG0907066.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLKEYDFITPHRFKYELIKQSIKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDATRLSLDLSAMQIMNPLNSEYNQKFTSILYEARKSKGMSLEEA
                     KMLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPTAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            4844..6034
                     /locus_tag="SB815_001347"
     CDS             4844..6034
                     /locus_tag="SB815_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEG0907067.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKVVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSVDTSMGFTPLEGLVMGTRCGDLDPAILPFISHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFELNKQRISGERMINHANSKVKVLVIPTDEELEIARITEEL
                     IGKN"
     gene            complement(6062..>7030)
                     /locus_tag="SB815_001348"
     CDS             complement(6062..>7030)
                     /locus_tag="SB815_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEG0907068.1"
                     /translation="DEILTLNLKDIKKLSPTHLALMELKDKQALEILRKSYNAFQNLS
                     FDYIDFRRELDMTNDKDLFIEEFREGLLPLYEGKMIHQFDANFSQATYFLEKAKFDER
                     LKSKELYRAKKATGKELNPKLIKYDREFFRLGYRKIASDTNERTLIASLLPKNCGGAD
                     STYSNIPKQYVLKDDVICMDIVPYERILFVLALFNSLVVDFIIRNMVQINVSKSYLER
                     IPLPQPSDEEIQNNEIYKTLAKNALLLQLYNDQNRHFDELKQEFNIKNEEIPKTKKAY
                     DILRAKNDLLVKELYGLSDDEFSYMISTFKVLNEKQSEYITLLKTI"
BASE COUNT         2403 a          935 c         1201 g         2491 t
ORIGIN      
        1 aaaaagtgta aacaagtgat ttatttttta taaaataatc tattacatct ttttctttca
       61 tcatttttga ttctgtttca tctatggtta ttttaatttg atataaaaaa tcatacaaat
      121 aatgtttaat tgttgaaaat aaaagattgt tttgttctaa ttgtttaaaa tcatttttat
      181 caatatatac acccatatca ttacatagat cgttttttat aatttcttgt attatgtcta
      241 ttttttcatg attgatatgt tttctgtcta aaattatggg aatgctagaa gttttatcaa
      301 tattgaaatt tttattattt ttaggagtat taagataaaa ggtgttatta atatctttag
      361 aatttgcata aagtgtaata ggaaaaagat agcgaatata acctctaaat tctttaattt
      421 taaataaatc taatttatct ttatgggggg gggtaaaatt aaaatttata gcaagtaaat
      481 tcatggtatc gaaggccttt gattggcgga tttcttccat atcaagatag tatacattgt
      541 ctttgttaaa atattttaat aaataagaga tgataaaaac tccttgttgt agttcattta
      601 tatcgatttt aattttatga ttttgatgag taagatagtt gatgtaataa cgccaatcat
      661 aagttagatt aaattcgggg ggatagtttc ttaaaacttt actccaatct cttccccagc
      721 tatgctttaa aagtcctatt ggatctcgaa ctccgcaaat aatcttagaa ttaaaatcta
      781 ataaagatag atatttatca aaataaggta gattaatttc tgatatatta atagcatatt
      841 gagcaattgt attatcattt agacacatgt aattaataca atatctctct ttgctatcag
      901 gtggtaaaac ccaggaggca aaacaagtca catcgcaaca ttgattaagg tatcttaaaa
      961 atgctgctgc tccaacgcca tgtggagaaa tatagataaa tttatagtgt ttaggcaggg
     1021 gtaaatttaa atcccaagct aattctgcgc aatgtctact agaatctatt tctataaaat
     1081 taggattgat taaaggtgga taaggatgtt ttgttgataa atatctatcc ctaaattcgt
     1141 tagaattgag ccaagtgcaa attgtttcaa tattttccaa aacaaaggta aaaaattttt
     1201 cattattcga attttttaaa gcttgtaaaa gaatttgagc tagggttgga gttaggttat
     1261 tttttatata gagtaaaaga ttttgcatat aacctctttt aattgtattt aatttatata
     1321 taattcataa atatttaaat gtcatgaaat ttaaatatat tatcaaaaat aaactttaat
     1381 taaagcaata aaaagttaaa atttgatatt aaaatttttc aaagagtgaa gttatggagt
     1441 ataaaagatt taaaaccaga caaatcaaag taggaaatgt tttaataggc ggtgatgcac
     1501 ccatttcagt tcaatctatg ctttttacta aaacaagaga tatagaaggt tctttagaac
     1561 aaatcaatcg tctttatttt gcaggagcaa acatagtgcg tttggcgtgc ttggatatgg
     1621 ctgatgcaag ggctttaaaa gagattaaag ctaaaagtcc tctaccttta atcgtagata
     1681 ttcattttaa tcataatttg gctgtatatt gtgctgaatt tatcgatggc gtgcgtataa
     1741 atcctggcaa tataggctct aaagaaaata tcaaagaagt ggtaaaagca tgtaaagaac
     1801 ggggtatccc tatacgcatc ggtgtaaatc acggctccat agaaaaacaa tttagtgata
     1861 aatttggtta tggtgtcgat gccatgctag aaagtgcgat gtataatatc aagcttttag
     1921 aggatttaga cttttttgat attaaaattt ccatgaagac ttcagatgct caaaaaacta
     1981 tagaagctta tgagagatta agaccgcttt gtgattatcc ttttcactta ggggtaactg
     2041 aagcaggaac taaatttcat agcactgtaa aaagttctat agctttagga aatttacttc
     2101 ttaaaggtat aggcgatact atgcgtgttt ctatgactgg cgaacttgaa gaagaaattc
     2161 gtgtagcaag ggcgatttta caagatagcg gagtgcaaaa aagcggagta aatatcatct
     2221 cttgtccaac ttgcggtagg attcaaagtg atttgttaag tgcgattaaa atcgtagagg
     2281 aaaaaaccaa gcatataaaa gaacctttaa atatcagtgt catgggttgc gtggtaaatg
     2341 ctttaggtga agctaagggc gctgatgtgg ctatagcctt tgggaaaaat caaggacttg
     2401 ttataagaca tggtgaagtt gtagctaaac tgaaagaaag tgaacttgta gatagatttt
     2461 tagctgaagt tgaagatgag gttaaaagta gggctgtaaa agaataaaag ccaagaagca
     2521 aggtttaacc ttgcttttag aatggccata tcgcttctat aactttgcta ccccaaggtt
     2581 ttcttgtgct tctatccact tcaccttctg ttttataaag aattttagca tctgctatat
     2641 atttactatc tatagtattg tcttgaccga tgtcataagg acgaataaca ccgcttaatt
     2701 gtatgatttg cttctctccg ttgattaaaa gctctcttga accttcgata aaataattac
     2761 catttgataa aattttaatt acacgtgttg aaattgtagt attgaaactt tcatttctgc
     2821 tttgcgagcc tgttcctgtg tagttgtttg aactattggt ttgaaagcct atattagaat
     2881 aagcattgac tttattaaga gcattagcta ccactcctga acttcctgtt aaagcacctc
     2941 cgcctaaatt tgaggtatta gttctgcttg ttgctttatt agcttgtgtg ctttgagtgg
     3001 tactttcttg tataacaact gtaactaaat catttacatt catagctttt ttatctgaaa
     3061 ataaaggatt atctcctttg ccaaaaagcg atcctggcgc actttctata ttattacttt
     3121 gttttggtgc aagttcttct acataagcag gtggtttcat tgaaatttgc ggatcaaccg
     3181 ttgcagaaca accaaaaaac acaaacggta acacataaaa taaaactttt ttcattttcg
     3241 tcctttaaaa tatgaatttt tatttttctt tgttaaaatt agaaaaagca aagagtgttc
     3301 cacatttata aattcaagga gaaaatgatg gcaaatcttt atttgatgag atctagaagt
     3361 gatgagttaa atactattat tagtacaaat ttgcttaaaa attatagcaa aatttacaaa
     3421 aatatcgcaa tttattgccc tgtgatatac atacatcgcg ttcctgtttt gcagggttgg
     3481 ttggaagaat ttaatatcaa tcaaaccgta aaaagcgctt atggttttac ctttagagag
     3541 gcaatggagg aatttagcaa agatcctcat aattttttta atgttatttt agaagaatac
     3601 gaagagttaa aacgcaaata cgattttgtg cttgtaaata gtttttgcga atttggaata
     3661 cttgatggat ttgatcttag tataaaattg gctaaaaatc ttaatacccc tatcgctgct
     3721 attattaacg atgaagataa acttatagct caaaaatatt ttgatcatgc tctagatggt
     3781 cgtaattatg ttttgattaa tgaaaatttt aattttgaag aagtgcaaaa acttaaagaa
     3841 tatgatttta taactcctca tcgttttaaa tatgaattaa tcaaacaaag tataaaaaat
     3901 aaaaaaaccg ttgttttgcc agaaagtaat gatgagagaa ttttaaaagc cgctgaaatt
     3961 ttattaaaaa gtaaagttgt tgatcttatt ttattgggcg atgaagaaaa aatcaaacaa
     4021 gatgctacta gattaagtct tgatttaagt gctatgcaaa ttatgaatcc acttaattca
     4081 gaatataatc aaaaatttac ttctattctt tatgaagcaa gaaaatctaa aggcatgagt
     4141 ttagaagagg ctaagatgct agttcaggat aaaacttatt ttggaacttt gcttatacat
     4201 actggaaaag ctgatgctat ggttagtgga gcatcaacta ctacggctga aacgattcgc
     4261 cctgcattac agcttattaa aactaaagaa ggtattagtt ccgtttcagg aattttcttt
     4321 atggggcttg aagatcaagt tttagctttt gctgattgtg ctgtaaatcc aagtccaact
     4381 gccgaacagc ttgcaactag tgcttatgta agtgctatga ctgctaaatc ttttggactt
     4441 gaaccaagaa tagctttgct ttcttattct agtggtgata gcggtaaagg agaaagcgta
     4501 gatcttgtaa aagaagcatt aaagattgct aaagaaaaat atcctgagtt gaatatagat
     4561 ggtcctatgc agtttgactg cgcttatgat ccaaaaactg cagcaaagaa aatgccaaat
     4621 tctaagatag caggtcatgc aaatgtgtat atttttcctg atcttaacgc agcaaatatt
     4681 tgttacaaag cagttcaaag aactgctaat gctttagcaa tcggtcctat tttgcaaggt
     4741 cttaaaaaac ctgttaatga tttaagtcgt ggatgtttgg tagatgatat tgtagatact
     4801 gtaattttaa gtgcaataca agctcaatag aaaggaatga taaatgaaaa ttttagtttt
     4861 aaattcaggt tcttcatcga ttaaatttaa attttttgat aataaagtcg ttaaagcgag
     4921 tggcttagta gagaaaattg gagagcaaaa ttcaaaggtt gtattaaaaa atactttaaa
     4981 taatgaaagt tttgaaagag aattaacaat aaataatcac gaagaaggcc ttagtatagt
     5041 taatgagctt tttaaagaat caggaatttt agcagattta aatgcgcttg atggctgcgg
     5101 tcatcgtata gttcatgggg gaagaaattt aagcgagcat tgtttagtgg atgattatgt
     5161 tcttaaagag atagataggg ttagtatttt tgctcctttg cataatcctg cgcatttagc
     5221 aggtataaaa acaatgatca aagctgcacc tagtgttgct aatgcagcta tttttgatac
     5281 agcttttcat cgcactatgc ctgattttgc ttatatgtat gctttgcctt atgattttta
     5341 tgataagcat aatattagaa gatatggttt tcatgggact tctcatgctt atgttagttc
     5401 tagagcggca aaatttcttc aaaaagatca aaatgaatta aatgtcatct ctgctcatct
     5461 tggaaatggt gcaagtgtat gtgctataga aaaaggtaag agtgtggata cttctatggg
     5521 atttactcca cttgaagggc ttgttatggg aacgcgttgt ggagatttag atcctgctat
     5581 tttacctttt attagccatc ttaagggttt aactatagaa gaaatagata cactgatgaa
     5641 taaaaaaagt ggagtatatg gaatttgcgg ttataatgat tttagagata tagaaagaga
     5701 gatagaacaa ggtaatgata aagcacgctt ggctcttgat atgttttgtt atcgtcttgt
     5761 taaatatata ggatcctact ttgctgtgtt gccaaaaacc gatgctatta tttttacagg
     5821 tggcatagga gaaaatgata gtttggttcg acaaaaagta tgtgagagat tagctcatct
     5881 tggtatcgag ttagattttg aacttaacaa acaaaggatt tcgggcgaaa gaatgataaa
     5941 tcatgcaaat tctaaagtta aagtgcttgt tattcctaca gatgaagaat tagaaatcgc
     6001 tagaattaca gaagaactta tcggtaaaaa ttaaatttta aaaactatat aaatctttca
     6061 tttatatagt ttttagcaaa gttatatatt cactttgctt ttcatttaaa actttaaaag
     6121 tgcttatcat ataagaaaat tcatcatcac ttaaaccata aagttcttta accaataaat
     6181 cattttttgc tcttaagata tcataagcct ttttagtttt tggaatttct tcatttttta
     6241 tattaaattc ttgttttagc tcatcaaaat gacgattttg atcattgtaa agctgtaaaa
     6301 gcaaagcatt tttagcgagg gttttataaa tttcattgtt ttgaatttct tcatcacttg
     6361 gttgaggcag gggaattctt tctaaataag atttgcttac attgatttgc accatatttc
     6421 ttatgataaa atcaaccact aaagaattaa acaaagctaa aacaaataaa attctttcat
     6481 aaggcactat atccatgcaa attacatcat cttttaaaac atattgtttt ggaatgttac
     6541 tataagtact atcagctcca ccgcaatttt ttggtaataa agaagctatc aaagttctct
     6601 catttgtatc acttgcaatt tttctatatc cgagtctaaa aaattctcta tcgtatttta
     6661 ttaatttagg atttaattct ttcccagtag cttttttagc tctataaagt tctttacttt
     6721 ttaaacgctc atcaaattta gccttttcta aaaaataagt agcttggcta aaatttgcat
     6781 caaattgatg tatcatttta ccttcatata agggtaaaag tccttcccta aactcttcta
     6841 taaacaaatc tttatcgttt gtcatatcaa gttctcttct aaaatctata taatcaaaag
     6901 acaagttttg aaaagcatta taagattttc ttagaatttc taaagcttgc ttgtctttta
     6961 actccattaa ggctaggtga gttgggctta gctttttgat atcttttaaa tttagagtta
     7021 aaatttcatc
//
LOCUS       DARBAR010000086         6684 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.086, whole genome shotgun sequence.
ACCESSION   DARBAR010000086 DARBAR010000000
VERSION     DARBAR010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6684)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6684)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6684
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.086"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            15..2099
                     /locus_tag="SB815_001349"
     CDS             15..2099
                     /locus_tag="SB815_001349"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HEG0907069.1"
                     /translation="MQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITS
                     ELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLE
                     MIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNVLAYELKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
     gene            complement(2184..2542)
                     /gene="ssrA"
                     /locus_tag="SB815_001350"
     tmRNA           complement(2184..2542)
                     /gene="ssrA"
                     /locus_tag="SB815_001350"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(2543..2953)
                     /locus_tag="SB815_001351"
     CDS             complement(2543..2953)
                     /locus_tag="SB815_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HEG0907070.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            3044..4051
                     /gene="ruvB"
                     /locus_tag="SB815_001352"
     CDS             3044..4051
                     /gene="ruvB"
                     /locus_tag="SB815_001352"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEG0907071.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            4055..5098
                     /locus_tag="SB815_001353"
     CDS             4055..5098
                     /locus_tag="SB815_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEG0907072.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITI
                     FYGYDGILMGVIFAVSSLIPAIGGALIYMPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(5128..6519)
                     /gene="fumC"
                     /locus_tag="SB815_001354"
     CDS             complement(5128..6519)
                     /gene="fumC"
                     /locus_tag="SB815_001354"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEG0907073.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFISSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDVAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESTMELGLVSEEDFN
                     KFVDPTKMIGPKA"
BASE COUNT         2265 a         1128 c         1057 g         2234 t
ORIGIN      
        1 aaaaggaaaa attaatgcaa acaagtcctg atatgtttat caatcgcgaa ctttcttggc
       61 ttcgctttaa ttctcgtgtt ttagaccaat gttctaaaaa tttacccttg ttagaaaaat
      121 taaaatttat agctatatat tgcactaatt tagatgaatt ttatatgata cgcgtcgcag
      181 gcttaaaaca acttttttca gctggagtta atgcaagcag tagcgatgaa atgaccccgt
      241 tacaacaatt aaaagccata cgcaaatatt tacaccaaga aaaagaactt ttggagcgtt
      301 attttaatga aatcacaagt gaattagaaa aagaaaatct tttcataaaa cattatgaga
      361 atttagatga aaatttaaaa caaaaatgtg atgagtattt tttctctaat atttttcctg
      421 ttattgttcc aatagctgtt gatgctactc acccttttcc gcatttaaac aacttatctt
      481 tttcactagc ggttaaaatt tgcgataaag cgcatcctga acttgtaaaa tttggaatga
      541 ttagaattcc aagagtttta cctcgttttt atgaagtaag tgcaaatatt tatgttccta
      601 tagaaagtat agtccatcaa cacgcagaag aaatttttcc aggctataaa ctcttagctt
      661 cagcagcatt tagagtgact agaaatgcag atatggtaat agaagaggaa gaagctgatg
      721 attttatgat gattttagaa caaggcttga agcttcgcag aaaaggagct tttgtaagat
      781 tgcaaattca aaaagatgca gatgagcaaa tcgtagaatt tcttaatact cacatgaaaa
      841 tttttcataa agatgtttat gaatattcta ttttactcaa tctccctagc ctttggcaaa
      901 tcgcaggaaa taaaaccttt acgcatcttt taagcccact ttacacgcct aaaactttac
      961 caccttttga tgagaattta tctatttttg atgctgtaga aaaagaagat atactcatta
     1021 tacaaccttt tgaaagtttt gatccagttt ataaatttat caaagaagca agcaaagatc
     1081 ctgaagtaat ttccataaga atgacacttt atagagttga aaaaaattcc aatatagttc
     1141 aagctttaat tgatgctgca agcgatggaa aacaagtaac tgtgatggta gaattaaaag
     1201 cacgctttga tgaagaaaac aatcttcatt gggcaaaagc tttagaaaat gccggagctc
     1261 atgttattta tggcattaca ggttttaaag tccacgctaa ggtttctcaa gtcatacgca
     1321 aacaaggaga taaacttaaa ttttatatgc atttaagtac gggaaattat aatgcaagca
     1381 gtgctaaaat ctatactgat gtgagttatt ttacaagcaa agcagaattt gcaagagata
     1441 cgacaagctt ttttcacatc ttatcgggct ttagcaaaaa tcgtcgcctt caaactcttt
     1501 caatgagccc aaatcaaatc aaagaaaaag ttttagaaat gatacgcatt gaaacaagca
     1561 agaaaaatga aggtgtgatt gtagctaaaa tgaattctct tgtagatagt gatatcatac
     1621 aagcgcttta tgaagcaagt atggaaggag tgcaaatcga tcttatcata cgcggaattt
     1681 gttgcttaaa acctgatgaa gaatacagca aaaacatacg cgttagaagc atcataggaa
     1741 aatacttaga acatgctaga gtattttatt ttaaacatag tgagccaaat tattttatat
     1801 cgagtgcaga ttggatgcca agaaatttag agcgtcgctt agaacttatg actcctatat
     1861 atgatgaaag aagtaaagct aaattagctc aatttttacg cttgcaactt agtgataatg
     1921 ttttagctta tgagcttaaa aacaatggag agtatgaaaa aattccttct tctgaaaaaa
     1981 tcatagattc tcaacaaacc ttagaagaat atgtaagtaa aatttataaa acacttaaaa
     2041 aagatacaga tcaaagtcgt gcaacgcact tagcttccaa actttttaag gaaaactaaa
     2101 agtttttagg gttttacacc ttaaaaactt taaactatga atttttatta atcttcaaat
     2161 ttcaataaac attgatttaa aactggtgga agcgagggga atcgaacccc tgtccaaaaa
     2221 taatcccaca aagacctcta catgcttagc aaagatgact acttcaccct acttcgctca
     2281 tcttccaaaa ctcaaaagca aggctaagac tttatttcac ctcaacgctt gtcaaacgca
     2341 aggctacact atcaaaaatg accgaaaatt aagctagata gtatgactta aatttcaggc
     2401 tcaactgaac ttacgcagct ttagcgtaag caggagcgaa tttaacgttg tttgcgttta
     2461 attttatttg ggctttttac gctttgccca aagcgacatg ccatctaagc agacttactc
     2521 ctgtcgaagc caagtcgctc ccttatttag aaataatatt tggaacatta acaattaaag
     2581 gattaaaaac cgctaaaaca gaatcatcat tttcatatga acgacaatat ttttcaaact
     2641 gatcactcat caaaagcatc caatccgtaa attcatcact agcaggccca ttaaagcgat
     2701 ttgcttgcgc catcatctct tcacaaaata cacaaaaatc agtcacttct tcaagattta
     2761 agcgtcttgc tgcccaagcg gtattgtgtg ctaaagtttc aagctctttt atggcttctt
     2821 tataacgcac actatcgctt ccaagcttga tgattaaagg ttcaaaccta tcgcacatgg
     2881 ttctaaaaaa ttgtaaaaat ttttctatat cgtcaatttc ataatctaat tctaattttg
     2941 ttaaaattcc catttttaaa ccataatcat taaagtttaa tgtaaattct agcaaatttt
     3001 agctaaaatc ttattttaat ttttccaaaa tataagcaaa gatatggata gaatagtaga
     3061 aatagaaaaa tactcctttg atgaaactta cgaaacttcg ttgcgtcctt caaattttga
     3121 tggttatata ggtcaagaaa gcattaaaaa aaatttaaat gtctttatag ctgcagccaa
     3181 aaaacgcaat gaatgtttag atcatatact ttttagtggt cctgcaggac ttggaaaaac
     3241 aacactagct aatatcatct cctatgaaat gagtgcaaat atcaaaacaa ccgccgctcc
     3301 tatgatagaa aaaagcggag atttagccgc tattttaacc aatcttagcg aaggggatat
     3361 actttttatc gatgaaattc atcgcttaag tcctgctatc gaagaagtgc tttaccctgc
     3421 aatggaggat taccgccttg atattatcat aggtagtggt ccagctgctc aaaccataaa
     3481 aatcgattta ccaaaattta ctcttatagg ggctacaacg cgtgcaggta tgcttagcaa
     3541 tcctttgcgt gatcgttttg gtatgcaatt tagattagaa ttttacaaag atagcgaact
     3601 tgccctcatc ttgcaaaaag cagctttaaa acttaataaa acttgcgaag aaaaagccgc
     3661 acttgagatc gctaaaagaa gtcgttcaac ccctagaata gctctaaggc ttttaaaaag
     3721 agttagagat tttgccgatg ttaatgatga agagattatc acagaaaaaa gggctaatga
     3781 ggccttaaat tctttagggg ttaatgagct tggttttgat gcgatggatt taagatatct
     3841 tgaactttta accgctgcta agcaaaaacc tatcgggctt gcaagtattg ctgcggcttt
     3901 aagtgaagat gaaaatacca tagaagatgt aatcgagcct tatttattag ctaatggcta
     3961 tatagaacgc actgcaaaag ggcgtatagc aagtgcaaaa agttatagtg ctttaaaact
     4021 aaactatgaa aaaactttat ttgaggagta aattttgcaa aatggaaaat tctttcttat
     4081 aagctttatt ttagtcattt tatttctttt gctttacctt tttaaaggtt ttttacttgt
     4141 aattatcata gctagtttaa tggcggtagc tacctcaaat atcaatgcga aatttttaaa
     4201 tcttactaaa gggcataaat ttttagcttc cattcttaca acaacttgta tggttttgct
     4261 tttctttgca ccttttgttt atgctatgat agaacttgcc aaagctttaa aaaattttga
     4321 tattaattta gtcacacaaa ctcttgatta tgtcaaaaat tatcaattta ccttgcctga
     4381 aagctttaat tttttagaac ctaaaatcaa agaattttta gcatctatag atttaaatag
     4441 tatttctaaa caaattctaa gttatgcttc aagttttaca aaatcaggag ctaaatttct
     4501 tatagatatg gttttaattt gcgtatttta tttctttgca aatctatatg gaacagaact
     4561 tgttatctat cttaaatcca tcattcctat tgataaaaaa gaacttgatg atgttttaag
     4621 cgaggtgggt aatgttatgg ctgttgtact ttactctatg gtgattgtag cgatatttca
     4681 aggtgcgctt tttggtttaa tcacaatatt ttatggttat gatggaattt taatgggagt
     4741 aatttttgct gtaagttctc tcatacctgc tataggaggt gctttaattt atatgcctgt
     4801 aagtctttat gaatttgcct caaacaatct taactcagct cttgttattt ttatttattc
     4861 tgtaattgta atttctttta tagcagatac tttaatcaaa cctttaatca tcaaatggat
     4921 caacaaaaaa cttgtaaaaa cccctactaa aatcaatgaa cttttaattt tcttggctat
     4981 gatagcagga atttctacct ttggtttttg gggtattata ttaggtcctg cgattttaac
     5041 cttttttgta tcaactttaa gaatgtatgt gattttaaaa gataagaatt taatttaact
     5101 tgccttaaaa aaggcaagtt tgatgttcta ggcttttggg cctatcattt tagtaggatc
     5161 aacaaattta ttgaaatctt cttcgctaac caaaccaagc tccattgtgc tttcttttaa
     5221 agaaatacct tttttatggg catttttggc tactttagca gcgttttcat aacctatgtg
     5281 tggatttaga gcggtaacta gcattaaaga attatgaaga ttatgatcga tttttgcacg
     5341 atttggttct atgcctacag cacaatggat attgaatgaa tgcatagaat cagccaacaa
     5401 atcaagactt tgcaagaaat tataaataat cacaggctta aacacattaa gttcaaaatt
     5461 tccttgactt gctgcaaatc cgatagctac atcatttccc atcacttgta cagcaaccat
     5521 agtaacagct tcacactggg taggatttac cttacctggc ataatcgaac ttcctggctc
     5581 attttcaggg atgataagct caccaagacc gcatcttggg cctgaagcta accatcttat
     5641 atcatttgca attttcatta aatttgcagc caaacctttc atagctccat gagtaaaatt
     5701 aatcgcatca tgacttgtta aagcatgaaa tttatttgga cttgaaataa attttgtacc
     5761 tataagttga gttagctctt cacttacttt ttggcttaat tctggatgtg cattaagccc
     5821 tgttcccact gcggttcctc ctatggcaag ttctcttaaa gttggtaaag aagcgatgat
     5881 ttgctctttt gaatgtaaaa gcatagaaag atatccacta aattcttgcg ctagagtaag
     5941 tggagtagca tcttgtaaat gcgtgcgtcc tatcttgata ataccatcaa attcttttac
     6001 ttttttttca aaagttgcaa taagctcatc aagcgcaggg ataagctttt tctctacttg
     6061 ctcaaccgca acgatactca tagctgttgg aaaagtatca tttgaacttt gactcatatt
     6121 aacatgatca tttggatgta caagcttttc tttgcgaaaa tccccgccca tgatttcagt
     6181 ggcacgattt gcaataactt cattcatatt catattgctt tgtgtgcctg aacctgtttg
     6241 ccaaatcgca agtggaaaat tatcatcaaa tttacctgcg ataatctcat cgcaagcttg
     6301 aactatagca tttttcttag catcatcaag tttgccaagt ttgttattga ccaaagctaa
     6361 agatttttta agatttgcaa aagcatagat taaaaccttt ggcattttct cacaaccgat
     6421 tttgaaattt tcaaaacttc tttcagtttg agctccccaa tatttgtcat ttggaacctt
     6481 aacttcaccc atggtatcat gttcaactct gtattccata attttttcct ttgattaaaa
     6541 ttttatttat tataagctaa aaaaataaat actttcaaaa acgttttcct actgaactca
     6601 ttaaatgcaa ttcataggca ttatgagaaa atctattcat taacataaac tgccaaaata
     6661 cattgttttt atataaaaat tctg
//
LOCUS       DARBAR010000087         6670 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.087, whole genome shotgun sequence.
ACCESSION   DARBAR010000087 DARBAR010000000
VERSION     DARBAR010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6670)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6670)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6670
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.087"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..65)
                     /locus_tag="SB815_001355"
     CDS             complement(<1..65)
                     /locus_tag="SB815_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEG0907074.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKV"
     gene            complement(66..626)
                     /gene="ribA"
                     /locus_tag="SB815_001356"
     CDS             complement(66..626)
                     /gene="ribA"
                     /locus_tag="SB815_001356"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEG0907075.1"
                     /translation="MEIKISEIANLPSKWGNFQMQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            684..1667
                     /gene="hemB"
                     /locus_tag="SB815_001357"
     CDS             684..1667
                     /gene="hemB"
                     /locus_tag="SB815_001357"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEG0907076.1"
                     /translation="MFKRFRRLRLNENLRSMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDATLEISAKQALVHARAGV
                     DMVAPSGMMDGVITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETIIAFKRAGAKLIITYHAKELAKTLKGEK"
     gene            1664..2584
                     /gene="argF"
                     /locus_tag="SB815_001358"
     CDS             1664..2584
                     /gene="argF"
                     /locus_tag="SB815_001358"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG0907077.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            2581..3072
                     /locus_tag="SB815_001359"
     CDS             2581..3072
                     /locus_tag="SB815_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HEG0907078.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            3059..4414
                     /gene="hemN"
                     /locus_tag="SB815_001360"
     CDS             3059..4414
                     /gene="hemN"
                     /locus_tag="SB815_001360"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEG0907079.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNTNFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQNLILKIRSVFGNFSKDAEISCEIDPRFLNEEQATVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQPFELTQNALNLVRSKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGVGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFK
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            4416..5681
                     /locus_tag="SB815_001361"
     CDS             4416..5681
                     /locus_tag="SB815_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG0907080.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKIAKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKFNYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVSMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            5678..6439
                     /locus_tag="SB815_001362"
     CDS             5678..6439
                     /locus_tag="SB815_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5416 domain-containing protein"
                     /protein_id="HEG0907081.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDTEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENTKQTSMQFKNLKFFSRIFKNENFLSDFKESKQEVVTIKKHEKLEIFKNLSQED
                     QEISFVKIEILNYDSNEDSLSFNLDIFPSGMSYKYGILKGSMHIILQGKTSSTMLFPF
                     LKSMIYKNKSENSSEKIFTLMINQKKHYKLIANLS"
     gene            complement(6442..6648)
                     /locus_tag="SB815_001363"
     CDS             complement(6442..6648)
                     /locus_tag="SB815_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907082.1"
                     /translation="MEFLAFIFLIIIFLFVVFIIVTRYEKKIKLLNQNIQNMKEDIAD
                     LKETTQKNRSLIEKNRSNIENIIK"
BASE COUNT         2389 a          786 c         1250 g         2245 t
ORIGIN      
        1 tttacctttt cttcaaagtt ttttaaatcg tagttttgca aaaaatcata atctttaaaa
       61 atcatttatt taagatgtcc catttgagtt tgttttatgt ttaaatactc tacattaaaa
      121 cgattaggtt ctattaaaat cggtatgcgt gtgatgattt tttctttgat agaatctagc
      181 ttttcagggt tatttgtgag taaattaacc ttagaaattt catagtgttt gagtataaat
      241 tctacaattt cataagttct ctcatcggct ttaaagccaa gctgatgatt tgctttaatc
      301 gtatcaaaac ctttatcttg taaagcataa gcattaacct tgttaaaaag ccctataccc
      361 cttccttctt gtctaagata aatcaccatt ccgccattct tttctatata ttttagcgaa
      421 aattcaagct gttctccgca gtcgcatttt aaacttccta aagcatctcc tgttaagcac
      481 tctgaatgaa ttcttagatt gagtgtatct tttggagtgt ttttaaatat gcataaatgt
      541 tctttatcgt tttctttgaa actttgcatt tggaaatttc cccatttgct aggtaaattc
      601 gcaatttctg aaatttttat ttccatttac tactctctat aatcaaattt atgttaagat
      661 tttagcaaaa aaaggacaaa aaaatgttta aaagatttag aagattaagg cttaatgaaa
      721 acttaagatc tatggtaagg gaaaattctt taagtgtaaa tgatttgatt tatccgcttt
      781 ttgtggttaa tggaacgggg ataaaaaaag aaatttcttc tatgcctgat gtgtttcaaa
      841 tgagtttaga tgaaatttta aaagagtgtc aaaatgtagt taatttaggc attaaagcca
      901 ttatactttt tggtgtttta gaaaatgaga aaaaagacag ttgtggaagc gatgctttag
      961 atgatgaagg gcttgttgca agaagtataa gagagattaa gaaaaatttt ccagatcttt
     1021 ttataatcag tgatctttgt ttttgtgaat acacagatca cgggcattgt gggattatcg
     1081 atccaaaaac aaaaagcgta gataatgatg caactttaga aatttcagcc aagcaagcct
     1141 tagttcatgc aagagcaggg gtagatatgg tagcacctag tggaatgatg gatggtgtta
     1201 tcactacttt gcgcaaagct ttagataagg aaggttttga aaatttgcct ataatggcgt
     1261 attctactaa atttgcatca agttattatg ggccatttcg agatgtagca gagtcagctc
     1321 caagttatgg agatagaaaa agctatcaaa tggattttgc taatggtaaa gaagctttag
     1381 aagaaagctt ggaggatgaa gcacaaggag ctgatatttt aatggtaaaa cctgcccttg
     1441 cttatcttga tgtggttaaa gaaatatccc ttcattctaa cttgcctttg tgtgtttata
     1501 atgtaagcgg agagtatgct atgttaaagg cagctaaaaa tgcaggagtg attgattatg
     1561 aaaaagtttt gtatgaaact ataatagctt ttaaaagagc aggggcaaag cttatcatca
     1621 cttatcatgc taaagaatta gctaaaacgt taaaaggaga aaaatgaaac attttttaac
     1681 tttaagagat ttttctaagg aggaaatttt aagccttgta aatcatgcta gcgagcttaa
     1741 aaaagagcct aaaaaacttt tacaagataa aactttagca atgatttttg agaaaaactc
     1801 tacaagaaca agaatggcat ttgaattagc cataacagag cttggcggaa aggctttgtt
     1861 tttaagcagc aatgatttac aacttagtcg tggtgagcct gtaaaggata cagctagggt
     1921 gataggggcg atggttgatt ttgtgatgat gagggtcaat aaacatgaaa ctttactcga
     1981 atttgcaaga tattctaaag ctcctgtgat caatgcttta agcgagcttt atcatcctac
     2041 tcaggtttta ggggatttgt ttactatcaa agaatggaat aaaatgcaaa atggtatagc
     2101 aaaagttgct tttatcggag atagtaataa tatgtgcaat tcttggctta ttgcggctgc
     2161 gattttgggc tttgaaatta gtatagctat gccaaaaaac tataaaatta gccctgaaat
     2221 ttgggaattt gctatgaaac aggctttgat ttcaggagct aaaatttcct taggccatga
     2281 taaatttgaa gccttaaagg ataaagatgt agtcattacc gatacttggg tttccatggg
     2341 cgaagagaat gaaaaagaac gtaagattaa agaatttgaa ggatttatga tcgatgaaaa
     2401 ggctatgagc gttgccaata aagacgcgat attgcttcat tgtttgcctg cttatagagg
     2461 ttatgaagtg agtgaagaaa tttttgaaaa acatgcagat gtgatttttg aagaagcaag
     2521 aaatcgcctt tatgtggtaa aagccttgct ttgctttttg gataatcaga gaggaagaga
     2581 atgaaagagc tagaaaagta tagcacttgc ttaaaacgca ttgatgaatt tagtcaaaat
     2641 ctaggaataa agaaaaaaga tagaacgatt tttaaaatga agcaaagcga gaatgaaaac
     2701 gaaaaatgtt tagttcttga aaatggaagt tttgattctc ctgagccttg gtttgtgatc
     2761 gatgaaaacg atgaaattca cactttgctt tctttgcaaa gtcttaagaa tatacttgaa
     2821 agtttaaaac aaagtcaaaa agagaatttt gaattgcgtt tagaaaaggc gatttatcaa
     2881 caaattcctg tagattttaa cgatgtttgg acggttgcta tggatgagat caagcaaaag
     2941 gcgcaaaatg gcaccatgga agttagtatt gatcttgaaa aattaatttc taaaatcaaa
     3001 caagagcatc caaatttatt tgtagatatg caagcgatga tagaaagggt aaaccaaaat
     3061 gagagattat aaagcttttg taaaatactc taaagcagga ccacgctaca cttcttatcc
     3121 tacagcagta gagtttaata caaatttcaa atacgaagaa tatatagaaa ttttaaaaaa
     3181 gcaagataga tctttatcgc tttattttca tttgcctttt tgtaggagtg cctgttattt
     3241 ttgtggttgt aatgtcatct atactgcaaa agaagagagt aaagaaaggt atttaactta
     3301 tatttttaaa gagcttgata ttttaagtac tattttagat actaaaagag aagtggtgca
     3361 aatgcacttt gggggcggaa ctccaacttt ttttagtgct aaacaacttc aaaatttgat
     3421 tttaaaaatc agatctgttt ttggaaattt ttctaaagat gcagagatta gctgtgagat
     3481 cgatccgcgt tttttaaatg aggaacaagc cacagtttta acgcaaaatg gctttaatcg
     3541 tatcagcttt ggagtgcagg attttgatga aaaagttcaa aaagaaattc atcgcatcca
     3601 gccttttgaa ttaacgcaaa atgctttaaa tcttgtaaga agcaaaggca taaagtctgt
     3661 aaatatggat ttaatttatg gtttgcctta tcaaaattta caaagcttta cacaaacttt
     3721 agaaaaagtt atgcttttaa accctgatcg tttggcgatt tttaattacg ctcatgtgcc
     3781 ttggcttaag aaaaatatga gaaaatttga tgaaaatacc ttgccaagtc ctgatgttaa
     3841 gcttgaaatt ttagaatttt gtgagaaatt tttaagcaaa aatggttata aaatgatagg
     3901 aatggatcat tttgcaaaag aaaatgatga gctttttaaa gctttagaaa atggaacttt
     3961 gcatagaaat ttccaaggtt atactaccaa aggcggtgct gatttagtcg gtgttgggct
     4021 tacaagtata ggcgaaggac aaagacatta tgcgcaaaat tttaaagata tgtcaagtta
     4081 tgaagctgca ttagatagag gagttttgcc ttttgaaaga ggcgtagctt taagcgatga
     4141 tgatgagctt agaaaagcag tgattatgga gttaatggca aattttaagc ttgatattaa
     4201 gtcaatagaa aaagaatttt gcattgattt taaggagtat tttaaagagg atttaaaagc
     4261 tttagaagaa tacaaagatt ttattaattt tgatgaaaat tttatcaaag tcaatgaaac
     4321 aggtgttttg cttataagaa atattgctat gtgttttgat gcttatatga aaaacattag
     4381 tgaagataaa aaagtattct caaaaacggt gtaagatgaa atttagtcaa ataagtgatg
     4441 cttgtgttaa atgtggcaaa tgtatacctg tttgtactat acatgaagaa aatcgcgatg
     4501 aaattactag tccaagaggg tttttagatc ttttagctgc ttataaagag ggaagtctag
     4561 aacttgataa agaagctaag aaagtttttg aatcttgttt tttatgcacc aattgtgttg
     4621 aagtatgtcc aagtaaatta agagtagata atgccataga agaagttcgt tatgatatag
     4681 ctaaaaaatt tggtatagct tggtataaaa aacttatttt tttcttttta agaagacgca
     4741 aaattttaga tttggtagct aagcttggct atgtgtttca aagttgtgcg tttaaaattc
     4801 aaaatgagaa tgaaaataca ggtatgaagg caagattttc catgcctttt gttaaaaagg
     4861 gaagattact tacaagtttt aataaaaaaa gtttcttaaa ttctaatcca aaatttatca
     4921 ataatgatgg agaaaaaacc ataggttttt ttgtaggttg tttggcgaat tatttttaca
     4981 tagatacggc taatgcagtg cttaaaatcg ctaaggaatt aaaaatcaat gtggatttga
     5041 tgaaagaaca agtgtgttgt ggagcgccgc aattttttac gggtgatttt aaaagtgttg
     5101 aagttttggc taaaaaaaat attgagtatt ttgaaaaaaa attagaaaaa ttagatgcta
     5161 ttatagttcc tgaggccact tgttcggcta tgttaaagat agattatgaa cattttttta
     5221 taatgcaaaa tgatttagac tgggcaaaac gcgcaaaatg tgtgtcatct aagatatata
     5281 tggctagcga gtatttttat aaatttactt ctttggaaga aattttaaaa acaaaaaata
     5341 aatttaatta tagcattact tatcacgatc cttgccatgc aagaaaaatg caaggggttt
     5401 ttaaagagcc aagagaactt ttaaaaacaa attatcattt tgtagaaatg agtaattcta
     5461 atacttgttg cggttttggc ggggtgagta tgcaaacgga ttattatgat agagctttaa
     5521 gtgtagggct taaaaaagca caaatgatcg atgaaagtaa ggctagtgtg gtaagtgccg
     5581 agtgttcagc ttgtagaatg caaatttcaa atgcattaga acaaaattca agcaaggttg
     5641 tttttgctag tcctttagaa cttatagcaa aagctttgtg atgatgaaga tagtatttaa
     5701 aggcaaaagt tctgaatatg aaattcaaag atcgtgcttt tgtgttgatg cttttgtgat
     5761 taaagataag attgaagaac gagatggtgt tgattttatc acttcaaatg tagatctttt
     5821 ggaatttagt gatgacagtt ttacttttga agaaattgta aaacatttta atatttgtga
     5881 tactgaagat atgattatcg ttgaagattt tgacatgaaa tcaaacaaag ataatcaaaa
     5941 ccaagaagat gatatagaac acaacatctt aaaatccgaa aaaataatac atgaaaacac
     6001 aaaacaaaca agtatgcaat ttaaaaattt aaaatttttt tcaagaattt ttaaaaatga
     6061 aaattttctt tctgatttta aagaaagtaa gcaagaagtt gttactatca aaaaacatga
     6121 aaaacttgaa atttttaaaa atttatctca agaagatcaa gaaattagct ttgttaaaat
     6181 tgaaatttta aattatgata gtaatgaaga tagtttaagt tttaatcttg atatatttcc
     6241 aagcggtatg agctataagt acggaatttt aaaaggctct atgcatatta ttttacaagg
     6301 taaaacttct agtacgatgc tttttccgtt tttaaaaagt atgatttata aaaataaaag
     6361 cgaaaattca agtgaaaaaa tttttacttt aatgataaat cagaaaaaac actataagct
     6421 tatcgcaaat ctttcttagt tttattttat tatattttct atattagagc gatttttttc
     6481 aattaaagag cgattttttt gagttgtttc tttaagatcg gctatatctt ctttcatatt
     6541 ttgtatgttt tggttgagta attttatctt tttttcatag cgagtaacga tgataaagac
     6601 tacaaataaa aatataataa tcaaaaaaat aaatgctaaa aattccatat ttttcctttt
     6661 taaaactaga
//
LOCUS       DARBAR010000088         6608 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.088, whole genome shotgun sequence.
ACCESSION   DARBAR010000088 DARBAR010000000
VERSION     DARBAR010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6608)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6608)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6608
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.088"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..813
                     /locus_tag="SB815_001364"
     CDS             <1..813
                     /locus_tag="SB815_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEG0907083.1"
                     /translation="YEISTYFLPVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQ
                     SAKNEVAKDYALMQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGD
                     VLRPAPYNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNF
                     KGDDIGFVSRDSSRESVKVSDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKI
                     NKQKLDMNSDKFEQYKTMLEQNLQNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            810..2198
                     /gene="ftsA"
                     /locus_tag="SB815_001365"
     CDS             810..2198
                     /gene="ftsA"
                     /locus_tag="SB815_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEG0907084.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDRVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PTTFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDTESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            2214..3326
                     /gene="ftsZ"
                     /locus_tag="SB815_001366"
     CDS             2214..3326
                     /gene="ftsZ"
                     /locus_tag="SB815_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEG0907085.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            3482..4294
                     /locus_tag="SB815_001367"
     CDS             3482..4294
                     /locus_tag="SB815_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HEG0907086.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLKNSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLAAVK"
     gene            4323..5114
                     /gene="flgG"
                     /locus_tag="SB815_001368"
     CDS             4323..5114
                     /gene="flgG"
                     /locus_tag="SB815_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HEG0907087.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(5181..>6608)
                     /gene="glnA"
                     /locus_tag="SB815_001369"
     CDS             complement(5181..>6608)
                     /gene="glnA"
                     /locus_tag="SB815_001369"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEG0907088.1"
                     /translation="GKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAIN
                     EETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYKG
                     QMYEKCPRSIAKKAIEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTEE
                     GEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHHE
                     VAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHVH
                     MSLWKNGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFEA
                     PCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNKT
                     IPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQH
                     LKFETQVWPVEARPTAYEFKTCYSC"
BASE COUNT         2334 a          915 c         1244 g         2115 t
ORIGIN      
        1 tatgaaattt caacttattt tttgccagtt agcaatgaga aaattgacga caaagaatta
       61 gaaaaatttt ataatcaaga tgaaaataaa ctaaaatata aagattttgc aggtaaagtg
      121 atggattttc agtctgctaa aaatgaagtt gctaaagatt acgccttaat gcaactaaag
      181 aatgtggcta atgctaaatt tttagattta aaaaatggga aagataattt tcaaaaagat
      241 caaaatatta gtgaatctga tgtttattat ccaattgatc ttttgaataa agctaaaaat
      301 ggagatgttt tacggccagc accttataat aacggatata tcatagttaa actaaataaa
      361 gtagatccta taagaaataa aacttttgaa gaagctagag aagaagtttt acctatgtat
      421 ttaagcgaac aagctagaaa aaatttagaa gaaaaagcta aaaatagttt agtaaatttt
      481 aaaggcgatg atataggctt tgtaagtcga gatagttctc gcgagagtgt aaaggttagc
      541 gataaaatat taaacgattc tgaatttgct tattttttaa tgaatgtatt taatactgat
      601 caaaatagtt cttatgtggt cattaatgac aataaagcaa tattatataa aataaataaa
      661 caaaaattag atatgaactc cgataaattt gaacaataca aaactatgct tgaacaaaat
      721 ttgcaaaatt taaaagcaaa tgagcttaag caagaacttg ttgatgaact taaaaagata
      781 tatccgataa aaatttatta taaagggaat tgattttgaa tatattagga attgacttag
      841 gctcaaccca gacttgtgcc attattgctc aaaaagatga agatggatta aaaattattg
      901 gtttttccaa gtcgaaaacc aacggggtta aaaaaggtgc cattaccaat atagagcttg
      961 cttctaaatc tattgaagag gctgttagaa gtgctgagat gatgagcgga gttcattatg
     1021 atagggttgt ggtgtctata tcaggtgctt atactaaaag cgttgatagc ataggtgttg
     1081 ttaatattcc aaatcatgaa ataggcatta aagaaattca tcgtgctgta agtacagcta
     1141 agcatactgc caatctacca agtggttatg aaattatcca tgttttgcct tataatttta
     1201 aggttaatga tcttgaacat gttgatgatc ctttgggaat gagtggcaat cgtttagaag
     1261 tttcaaccca tatagtgatt tcacaagaat ctcatattaa aaatcttaag aaagcagttg
     1321 aattagctga tttaagagtg gataatatag ttctttcagg atatgcttca gctatagctt
     1381 gtttagatga tagcgaaaag gaattaggtg ctgttttgat tgatatgggt ggagcgattt
     1441 gtgatatggt tgttcatact ggaaattcaa ttagatataa tgattgtttg caaattggct
     1501 cgattaatat cactcaagat ttatcaatgg cattgcatac acctttaaaa gaagcagaaa
     1561 aaatcaagct taattatgca gctctttcac aacagcctaa tacccttata caaattcctt
     1621 caatgggtga tgaaagaaag gttaatgaag tttctttgga tattatttca aacgtaattt
     1681 atgcaagagc ggaagaaact ttgatgattt tggcaaaaat cttaagtgat aatcgttatg
     1741 ccaatgctat aggtggcgga gttgttttaa caggtggaat gactaagtta gcaggtattg
     1801 atgagctagc tcctacaaca tttgataatc gctcagttag actggctact gcaagaaaag
     1861 atttgattac tggttttagt gaaattttta atgatcctga aaatacttgt gctataggac
     1921 tttgtttata tggagcggga tattttacgc cttatgaact tgattctaat gagaaattaa
     1981 gatataaagg ggaaattgaa aattttaatc gtcaaattaa acaagatatt gttttgcaaa
     2041 aagatacaga aagtgaaata aaatctgatt tttttgatga aaatttgcaa gaaaatgata
     2101 caattgcaat acaagaacaa ttagatttta aagagccaaa agaaaaaaaa cctagtgttt
     2161 tttcaaatat ctggcataaa attatgaatc aattttaaca aggagaaatt tttatgagtg
     2221 aatttttagt agaagaaatg caacataata aaggtgcaaa aattaaggtt ataggctgcg
     2281 gtggcggtgg cggtaatatg attaaccata tggttaaaat gggattaaat gatcttgatt
     2341 taattgcagc gaatactgat gcacaagcta tttcaatttc attagcaaaa actaaaattc
     2401 aacttggcga gaaaaaaact aaaggtttgg gcgctggtat gcttcctgaa gtaggtgcag
     2461 aaagtgctag agaaagtttt gaagaaataa aagcaagtct tagtcaaagt gatattgtat
     2521 ttattgcttc aggttttggt ggaggtactg gaacgggtgc cactccagtt attgcacaag
     2581 cagctaaaga gattggagct ttaactgttt ctgttgtaac tatgcctttt gcattcgaag
     2641 gaaaacaaag aaaaaaactt gctgaaagcg gtctccttga gcttaaaaaa gaaagtgatt
     2701 ctattcttgt aattcaaaat gaaaaattat tgagcattat tgataaaaaa gcaggtatta
     2761 aagatgcttt taggttggtt gatgatattt tagctcgtgc tgtaaaaggt atggtgtcta
     2821 tcttacttga taatggagat attaatgttg actttgcgga tgtaagaacc atcatgagtc
     2881 atcgcggact cgcgcttatg ggtgttggta gtgctagcgg tgaaaatgct atagaagagg
     2941 ctctttcaaa cgctatagaa tctcctttgc ttgatggaat ggatattaaa ggtgccaagg
     3001 gagttatttt acattttaaa acaagttcta attgctcttt gtttgaaatt tcggcagcag
     3061 caaatagtat acaagaaatt gttgatgaaa atgctaagat tatttttggt tctactacag
     3121 atgatagcat ggaagataga gttgaagtaa ctattattgc gacagggttt gaagataaag
     3181 atacagtagc taaaaaatct accgaagaag ctcaagcttc taagaaaaat ccttatttaa
     3241 gtcttaaaaa ggtaagcggt ggttacgatg aagagataat ggcgcaaatt gaaacaccaa
     3301 ctttcttgcg tcgtcaaatg gattaaaatt gatttttaaa gcaagattga gtcaaatctt
     3361 gctttttata gtttaaaatt ctctcctaat aatctttcaa atatttattt ttctttgttt
     3421 ttaaaagttg gaacactctt tgcttttata gttataaaat cttaaattta taggtgaaaa
     3481 tatgcaaaat ggatattatc aagcaactgg cggaatggta actcagttta ataaacttga
     3541 tgtgattact aataatcttg ccaatattaa tacaagcgga tacaaaagag atgatgtggt
     3601 tattgcagat tttaaaagga tttttaaaga aactcaggat gagttgccta tagaaaatca
     3661 cacaagagat gcatctcgtt ttgtaaatac tacaatagat ggaatcccac aagtttctca
     3721 agaatatacg gattttagcc taggttcttt aaaggccaca aacaatcctt tggatttggc
     3781 aatgactaga gaagatgctt tttatttggt tcagaccaaa gatggagaag taagattaac
     3841 caaagatgga aattttcaac ttgatgatga gggttatttg gtaaataagc aaggatacaa
     3901 ggtattaagt agtgattatt ttaataatcc tcagaatgct ggcatacgca ttcctaatgg
     3961 tgctgttcaa attagcgttg ataaaaacgg aagcattgaa gttgatggag ctcaaaatgc
     4021 aagattattt gtagcacaag tagatgatat aagagctttg caaaaagatg gggataatgt
     4081 ctataaaata gatgatctaa cccgtattag agatttgaaa aactccaatg ctattcgcca
     4141 aggtttttct cagggatcaa atgttaatcc agttactgaa atggtaggac tgattgaagc
     4201 aaacagaatg gtagaaatgt atcaaaaagt tatgacagct catatggatg acttaaatca
     4261 agaagctatc aataagcttg cagctgttaa ataatttaaa ataaaataaa aaaggattaa
     4321 aaatgatgag atcacttcat actgctgcta caggaatggt agcgcagcaa acacaaattg
     4381 atgttacttc aaataacatc gccaatgtta atacagcagg ttttaagaaa agtcgcgcag
     4441 aatttgctga tcttatgtat caagttatga agtatgcagg aacttcaact tcagctacta
     4501 ctctttctcc ttcgggtata gaagtgggtg tgggtgtgcg tccaacagcg gtaactaaag
     4561 tttttactga aggaaattta aaatcaacaa gtactgatgg tcttgatatg gctattgcag
     4621 gtaatgggtt ttttcaaata caacttcctg atggcactat aggatatact agaaatgggc
     4681 aatttacaaa agataatgaa ggtaatattg taaattcaga tggttataga cttttacctg
     4741 aaatgacaat acctgaaggc gcaacagcaa ttaatgttgc tacagatgga accgtttctg
     4801 taatgctacc aggggagcaa caagaaactc aaattggcca agtggagcta gttcagttta
     4861 taaatccagc gggtcttcat tctatgggtg ataatcttta tcttgaaaca ggagcaagtg
     4921 gtgcacctgt tgcgggtata gcaggacaag atgggcttgg aacaataaga catggattta
     4981 tagaacttag taatgttcag cttgttgaag aaatgacaga tcttatcaca ggacaaagag
     5041 cttatgaagc gggttctaag gccattacaa caagtgatga tatgctagga attgtaaatc
     5101 agcttaagcg atagttgata taaaataaat aatttttaat tcttttttgt ttaatggcgt
     5161 gttaaacgcc attaaatttt ttagcaagag tagcaagttt taaattcata agcagttgga
     5221 cgagcttcta ctggccaaac ttgtgtttca aattttaaat gctgatagtc atcgataaaa
     5281 atatcgctca ttacaggttt taaataagaa ttatgtcgga ttaaagcttc caaacttcct
     5341 cttagagtat gtggtaattg ctctatccct ttttcacgta tttcatccaa agtaagatca
     5401 aataaatttt catccatagg acccacagga atggttttat ttttgattcc atcaagacct
     5461 gccattaaaa gactaacaaa agctaaataa ggattagcag tgctatcagg gaagcgaatt
     5521 tctatacgag ctgaattttt acctatgcca taaggaacgc gacaacttgc tgatctgttt
     5581 tggcaagaat aagttaaaat acaaggagct tcaaagccag gaactattct tttgtaagag
     5641 ttggaacttg gatttgtaaa agctgcaaca cttctagcat tttttaaaat tccacctata
     5701 taatttatag cagtttgact aagtccactg tatccatctt tatcgtaaaa taaatttact
     5761 ccatttttcc ataagctcat atgaacatgc ataccattgc cattatctcc gtataaaggt
     5821 tttggcataa aagtggcagt tttgccattt aaatgagcta ccatttttac aacatattta
     5881 taaatttgaa cattgtcagc tgcttctaca agcgtgccaa aatttactcc tatttcagct
     5941 tgtccttgtg caacttcatg atgatgaaca aaagttttaa gacctacttt ttcaagggtt
     6001 tgaaccattt cagaacgaat atctactaaa gaatcaattg gctgaactgg aaaatatcca
     6061 cctttgtttc ttggcctgtg tccagtattg tagctatcgg taaattctct atcatcattc
     6121 cactctcctt cttcggtatc aacttcatac ttagaacaat gagtagtatc aactattttt
     6181 acactatcaa aaacaaagaa ttcattttct ggtccaaagt aagcagtatc agctatgcca
     6241 ctatttttaa ggtgttctat tgcttttttt gctatgcttc ttggacattt ttcatacatt
     6301 tgtcctttgt aaatatcata cacatcacaa aatactatga tagtaggatc agccgtaaaa
     6361 ggatctaaaa aagcactttg agcatcaggt tttaaaatca tatctgattt ttctataggt
     6421 tgccatccat gaattgagct tccatcaaat ggaatgccag tttgaaatgt ttcttcattg
     6481 attgcatgaa gattataggt aatatgatgc caagttccta tcatatctgt aaaacgaaaa
     6541 tcaacaaaaa gcacttcatt ttgtttgcaa aatttgaaaa aatcatctat attattaaca
     6601 aattttcc
//
LOCUS       DARBAR010000089         6582 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.089, whole genome shotgun sequence.
ACCESSION   DARBAR010000089 DARBAR010000000
VERSION     DARBAR010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6582)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6582)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6582
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.089"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            15..1322
                     /gene="dnaA"
                     /locus_tag="SB815_001370"
     CDS             15..1322
                     /gene="dnaA"
                     /locus_tag="SB815_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEG0907089.1"
                     /translation="MLENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPNELMAK
                     FIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILNPSFTF
                     ESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNASLEMGK
                     KVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEEFFFIF
                     NEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIRKKCEF
                     NDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKDHIKEK
                     KENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMPQLANY
                     FEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKILVKSQS"
     gene            1482..2549
                     /locus_tag="SB815_001371"
     CDS             1482..2549
                     /locus_tag="SB815_001371"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEG0907090.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     KASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFVRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMKLHF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            2578..4887
                     /gene="gyrB"
                     /locus_tag="SB815_001372"
     CDS             2578..4887
                     /gene="gyrB"
                     /locus_tag="SB815_001372"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEG0907091.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEANYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(4913..5254)
                     /locus_tag="SB815_001373"
     CDS             complement(4913..5254)
                     /locus_tag="SB815_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HEG0907092.1"
                     /translation="MKKIILILVLFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(5257..6495)
                     /locus_tag="SB815_001374"
     CDS             complement(5257..6495)
                     /locus_tag="SB815_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HEG0907093.1"
                     /translation="MKQNDQKENRRDFLKNIGLGLFGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YISNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNVYGV"
BASE COUNT         2483 a          979 c         1019 g         2101 t
ORIGIN      
        1 tgaatccaag ccaaatactt gaaaatttaa aaaaagaatt aagtgaaaac gaatacgaaa
       61 actatttatc aaatttaaaa ttcaacgaaa aacaaagcaa agcagatctt ttagttttta
      121 atgctccaaa tgaactcatg gctaaattca tacaaacaaa atacggcaaa aaaatcgcgc
      181 atttttatga agtgcaaagc ggaaataaag ccatcataaa tatacaagca caaagtgcta
      241 aacaaagcaa caaaagcaca aaaatcgaca tagctcatat aaaagcacaa agcacgattt
      301 taaatccttc ttttactttt gaaagttttg ttgtagggga ttctaacaaa tacgcttatg
      361 gagcatgtaa agccatagca cataaagaca aacttggaaa actttataat ccaatctttg
      421 tttatggacc tacaggactt ggaaaaacac atttacttca agcagttgga aatgcaagct
      481 tagaaatggg aaaaaaagtt atttacgcta ccagtgaaaa tttcatcaac gattttactt
      541 caaatttaaa aaatggttct ttagataaat ttcatgaaaa gtatagaaac tgcgatgttt
      601 tacttataga tgatgtacag tttttaggaa aaaccgataa aattcaagaa gaatttttct
      661 ttatatttaa tgaaatcaaa aataacgatg gacaaatcat catgacttca gacaatccac
      721 ccaacatgct aaaaggtata accgaacgct taaaaagtcg ttttgcacat gggatcatag
      781 ctgatataac tccacctcaa ctagatacaa aaatagccat cataagaaaa aaatgtgaat
      841 ttaacgatat caatctttct aatgatatta taaactatat cgctacttct ttaggggata
      901 atataagaga aatcgaaggt atcatcataa gtttaaatgc ttatgcaacc atactaggac
      961 aagaaatcac actcgaactt gccaaaagtg tgatgaaaga tcatatcaaa gaaaagaaag
     1021 aaaatatcac tatagatgac attttatctt tggtatgtaa agaatttaac atcaaaccaa
     1081 gcgatgtgaa atccaataaa aaaactcaaa atatagtcac agcaagacgc attgtgattt
     1141 acctagctag ggcacttacg gctttgacta tgccacaact tgcgaattat tttgaaatga
     1201 aagatcatac agctatttca cataatgtta aaaaaatcac agaaatgata gaaaatgatg
     1261 cttctttaaa agcaaaaatc gaagaactta aaaacaaaat tcttgttaaa agtcaaagtt
     1321 aagtgaaagg atgtgaaaaa taaattctag agtgtgaaaa aaagaaatta agcaaagtat
     1381 gataaaatac aaatttgatt attttgcttt gaaaaatttc acaatttcaa caagcttatt
     1441 attacaacga atttaaaatt aaaataaacc aaggagaaaa aatgaagtta agtatcaata
     1501 aaaatacttt agaatctgca gtgattttat gtaatgctta tgtagaaaaa aaagactcaa
     1561 gcaccattac ttctcatctt ttttttcatg ctgatgaaga taaacttctt attaaagcta
     1621 gtgattatga aataggtatc aactataaaa taaaaaaaat ccgcgtagaa tcaagtggtt
     1681 ttgctactgc aaatgcaaaa agtattgcag atgttattaa aagcttaaac aatgaagaag
     1741 ttgttttaga aaccattgat aattttttat ttgtaagaca aaaaagtaca aaatacaaac
     1801 ttcctatgtt taatcatgaa gattttccaa attttccaaa tacagaagga aaaaaccaat
     1861 ttgacattga ttcaagtgat ttaagccgtt ctcttaaaaa gatattacca agtattgata
     1921 caaataaccc aaaatactcc ttaaatggtg catttttaga tataaaaaca gataaaatta
     1981 acttcgtagg aactgataca aaacgccttg caatctatac tttagaaaaa gcaaataatc
     2041 aagaatttag ttttagtatc cctaaaaaag ctattatgga aatgcaaaaa cttttctatg
     2101 aaaaaataga aattttttat gatcaaaata tgcttattgc caaaaatgaa aattttgaat
     2161 tctttacaaa acttatcaat gataaatttc cagattatga aaaagttata ccaaaaactt
     2221 tcaaacaaga actcagtttt tcaactgaag attttataga tagtcttaaa aaaatcagcg
     2281 ttgtaactga aaaaatgaaa cttcatttta acaaagataa aatcatcttt gaaggtataa
     2341 gtttagacaa tatggaagca aaaacagaac ttgaaattca aacaggagtg agtgaagaat
     2401 ttaatcttac tataaaaatc aaatatttac ttgatttctt aacttctata gaagaagaaa
     2461 aattcacttt aagtgtaaat gaacctaatt cagcatttat agtcaaatcc caaggactat
     2521 caatgattat catgcctatg attttgtaat aaaacaagta aaagataaag gaaaaatatg
     2581 caagaaaatt acggtgcgag taatattaaa gtcctaaaag gcctagaagc tgttagaaaa
     2641 cgcccaggta tgtatatagg agatacaaac ataggcggac ttcatcatat gatttatgaa
     2701 gttgtggata attctatcga tgaagctatg gcaggacatt gtgatactat agatgtagaa
     2761 atcactactg aaggaagctg tatagttagt gataatggtc gtggtattcc tgttgatatg
     2821 cacccaactg aaaatatgcc aactttaact gttgttttaa ctgtcctaca tgcaggggga
     2881 aaattcgata aagatactta taaagtttca ggcggtttgc acggtgttgg ggtttcagtt
     2941 gtaaatgcac tctctaaaaa acttgtagct acagttgaaa gaaatggaga aatttatcgt
     3001 caagaatttt cagaaggtaa agttatcagt gaatttggtg tgataggaaa aagtaaaaaa
     3061 acaggaacaa ctatagaatt ttggcctgat gatcaaattt ttgaagtgac tgaatttgat
     3121 tatgaaattt tggctaaaag atttcgtgaa cttgcatact taaatccaaa aatcactata
     3181 aattttaaag ataaccgcgt aggcaaacat gaaagttttc actttgaagg tggaatttct
     3241 cagtttgtta cagacttaaa taaaaaagaa gctttaacta aagcaatttt ctttagtgta
     3301 gatgaagaag atgtgaatgt tgaagtagct ttgctttaca atgatactta tagtgaaaat
     3361 ttactctctt ttgtaaataa tatcaaaacc ccagatggtg gaacacacga agctggtttt
     3421 agaatgggtt taactcgtgt gataagtaat tatatagaag caaatgcaag tgctagagaa
     3481 aaggataata aaatcacggg tgatgatgtg cgtgaaggtt tgatcgctat tgtgagtgta
     3541 aaggtacctg aaccacaatt tgaaggacaa accaaaggaa aacttggttc aacttatgtg
     3601 cgtcctatag tttcaaaagc aagttttgaa tatttgacta aatattttga agaaaatcct
     3661 atcgaagcta aagctataat gaacaaagcc ttaatggcag ctagaggaag agaagcagca
     3721 aaaaaagcta gagaattaac gcgtaaaaaa gaaagtttaa gcgtaggaac tttaccaggg
     3781 aaattggctg attgtcaaag taaagatcca agtgaaagtg aaatttatct tgtggaaggg
     3841 gattctgcag gaggttctgc aaaacaaggt agagaaagat ctttccaagc tatactgcct
     3901 ttgcgtggta aaattttaaa tgttgaaaaa gcaagactgg ataaaatttt aaaatctgag
     3961 caaattcaaa atatgattac cgcttttggc tgtggtatag gtgaagattt tgatctttca
     4021 aaacttagat atcataaaat catcatcatg acagatgcgg atgttgatgg atcacatata
     4081 caaaccttgc ttttaacttt cttcttccgt tttatgaatg aacttgtagc aaatggacat
     4141 atttatctag cacaaccacc tttatatctt tataaaaaag ctaaaaagca aatttattta
     4201 aaggatgaaa aagctttgag cgaatacctg atagaaacag gaatagaagg tttaaactat
     4261 gaaggtatag gaatgaatga tttaaaagat tatttaaaaa tcgttgcagc ttatcgtgcg
     4321 attttaaaag atcttgaaaa acgttttaat gtgatttctg tgatacgcta tatgatagaa
     4381 aattcaaatt tagttaaagg aaataatgaa gaattattta gtgtaatcaa acaattttta
     4441 gaaacacaag gacacaatat cttaaatcat tatatcaacg aaaatgaaat tcgagctttc
     4501 gttcaaactc aaaatggctt agaagaactt gtgatcaatg aagaactttt cactcatcca
     4561 ctatatgaag aagcaaatta tatttttgat aagattaaag atagaggctt ggaatttgat
     4621 aaagatattt tagaagttct tgaagatgtt gaaaccaatg ctaaaaaagg tgctactata
     4681 caacgctata aaggtttagg ggaaatgaat cctgagcaac tttgggaaac cacaatggat
     4741 ccaagtgtaa gaagactttt aaaaatcact attgaagatg cacaaagtgc aaatgatacc
     4801 tttaatctct ttatgggtga tgaggttgaa ccaagacgcg attatatcca agcacacgct
     4861 aaagatgtaa agcatttgga tgtgtaaatt tatcattgaa gaaatcattt cttcaatgag
     4921 ttttgttttg taagagtata gctagaggaa ttcttcttct tgtatcgtat ttttctccat
     4981 aatatttttc aagataattt aaaatttttt cttcatcttc aggttctatt tcccaaagtc
     5041 cttcactatc ttgcatccat cttatagctg ctaaccaagc ttttctactt gcatgcatat
     5101 tagtaatgag attggatcca tgacaagcta aacaatttgc ttccactaaa ggtgaatcag
     5161 gatcgataat caatcctgta tcagggttaa tttcaagatt ttgagcccaa cttgcactta
     5221 aaaacaatac taagatcaat ataatttttt tcatacttaa actccataaa cattaactct
     5281 atggcatgca ttattgatat atcctcctgg attccactgt gctaaaacca taggttgact
     5341 gttaccttga ctatcgatag ctcttgccca aatttcataa tatccttttg ttggtattga
     5401 tatttgagca ctccattttt gccatgctaa tctatttaat ggtttttcta cctttgcttt
     5461 agtccatgtt acgccataat cattgcttat ataaacttca ctaacttcaa gttctccagc
     5521 ccaagcttta cctctaactt caaatttttt atttgctttt atttcagaac catttttgat
     5581 attagtaatt acagatctta taggcattga ttctatgatt ttcatctcgc ctttatagtt
     5641 aaaatctcct ggttttaccg gatttacagg aactttataa gaaccttcca ttttttcacc
     5701 atcatgaatt ttatttctta ctgaaatttt ataaagccat ttaccgcttg tacttgcagg
     5761 gtaaccacca caaacaagtc taagtggata gccattgact aaaggaatat ctttgccttc
     5821 ataagcccaa gctattagag tttcatcttg taaagcttta gaaataggaa ctcctctact
     5881 aataggtgaa gtttcttcac catttaattt tgtatctatg ccataatatc cgatataaac
     5941 cgcatcattt ttgatgccac aatcttttaa aatatctttt aaacgcactc ctgtccatct
     6001 accgcaagct actgcaccat aaccccattg agttcctttt gtgctaggta taacttcgga
     6061 tctaccattt ccaccgcatt caactgttaa ggcataagta taggttttaa atttcttttt
     6121 taaatcttct atggtgtaag attttttatt gataatgctt tctccatcga tttctaaagt
     6181 ccaaccttta tgaagtcttt cttttatcgt ttctaggctt ggtggtaagc cattatttct
     6241 aacaaagaaa ttttcaggtt tagtaaaatc agaatcaaga gcataaattt cagtttctgc
     6301 tgttaatggt ttttcgccat ggtagataag atctttttta ccttctattt taaaatcagg
     6361 caattctttt gccaaagcct tacttcctaa aaaattctca aaagaaaaat ttgacaatac
     6421 actaatgcca aataaaccaa gtcctatatt ttttagaaag tctctacgat tttctttttg
     6481 atcgttctgt ttcattgaaa tatccttaaa tatttatata atcttttatt ttattataaa
     6541 ttttaaaaat ttaaataatt aatataatta attatttaaa tt
//
LOCUS       DARBAR010000090         6531 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.090, whole genome shotgun sequence.
ACCESSION   DARBAR010000090 DARBAR010000000
VERSION     DARBAR010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6531
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.090"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..846
                     /locus_tag="SB815_001375"
     CDS             <1..846
                     /locus_tag="SB815_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S cluster-binding domain-containing
                     protein"
                     /protein_id="HEG0907094.1"
                     /translation="LSQLKKEHYKVLDFHLRKITPQAFLEIVEIHLAESCNLNCFGCN
                     HFSQIAEKEFPDIEIFKKDMQRLSEISKGIVGTFRLMGGEPLLNPNCIQFFDITRYFF
                     PKSAIWLVTNGILLDKQNEDFWNSCQRNKMQIRPTKYPIKINWDLIKDKCDQYDIPLI
                     FFNNGELEKTSWKFSLDPSGNCDNYHSFTNCSMANHCVQFKDGKLFTCTFPAHVQHFN
                     KKYGNHFEVCEFDFIDIYKAKDYQEILFFLSKPIPFCRYCKVSQWAEIGKWRSSNKTK
                     HEYLI"
     gene            856..3951
                     /locus_tag="SB815_001376"
     CDS             856..3951
                     /locus_tag="SB815_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEG0907095.1"
                     /translation="MIKKILLITPELEYTGALNSFKRICEVLLNNKYAVDIWTYNEGP
                     YISEFDKLGVYVEVISEDDIDSKWVHERISKYSLVIANTIVVYKCVELIQNLTPVVWY
                     IREAENLPDFFWKPERKLALEKAKKLYVVSEYAKDFIIHNYNKNVEVLHNYVDDVFYE
                     KHDDFLKQIKSDKLKFLALGTIEKRKGYDVLLQAFIDLPVDIRDQCELHFAGRFWEGA
                     KDFFPKILSLAKKFPNIFYHGELRDRKKIHSLIFQCNVMVVPSRDESCSLVALEGAMM
                     SKPLILTENIGAKYILDENSGWLVKTGSVDSLKNAFIQAYKNKNKLDAMGANSRNNYL
                     QTSTYEIYEKNILKMVRDEICKNQYLYRINQENYVLFSFDIFDTLISRNIAKPSAVFL
                     IMKQKMRNMDFPLNLVKNFDRIRVEVEQYYYRNVCKNKYEDTNFDEIYNLLQQNFSLS
                     FQQKEELMKLEINTEKETLYPIKKNIELVEELIKNEKRVVLISDMYFSSSIIRTFLNK
                     FSPIFNNIPIYMSSEFRLKKNSGNLFKAILNLEKVDPKKWIHCGDNWVGDYLKPSNLE
                     ISTNFYINQLLPYEEFALNRNSLDMDLQKIIGISKKIRLENTLTNLQEIGVSFGAPML
                     LPYVQWILNIALKNSIRCLYFIARDGYVLQKMTDMLIQAKKINIKTKYLYGSRESWRE
                     PFRNKDKLKIQLIDEYLDQEIDKQEIFAFVECCGTGETLDYIVKRIESNQQFKNMFFG
                     SLYLYRSKLNKTKTQSLFMLPLNENYTYGIELFVRSLQGQVLGYDKKDGRVIPVFDFL
                     EGEALQKFRYDEYIDGVMLFMEYIVKTDNYEKIFDNMNVTILYLNYLSNNYIDKKFIE
                     IMGNVPFILNGVKDRVGIFAPRLNNKITLDQKNSFFNWSVLRSCKDIRVKYNMDNDCY
                     FGLIGAVDIIKSHLSYKLGKVILLNIKNPLKWIKLIVLIPILIFSHHEQKKIYLTEKK
                     INIDLSFYKDYNEAIMVRNFFSYQLGELILKTSRKWNVLAIVILPYKIAQLYRKKFKK
                     G"
     gene            3954..5702
                     /locus_tag="SB815_001377"
     CDS             3954..5702
                     /locus_tag="SB815_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein CapA"
                     /protein_id="HEG0907096.1"
                     /translation="MDNSKPLIIAGRDDGFGERMRALLNALYISKKFGFKFGFVWRDI
                     NNIQNLLDGKVLIPWANLPTREYLFDQDFIKSYYRQDIEFAYETPVLWSLYRQSIKNI
                     LKKPYEKEWGWYSTQGDLSEYFTDVDEGEYRTELVSCWKQIDFSSHVKKIFEKAHSKF
                     LDIGKFVAIHIRTGEVIHDEFYRNILYHCRYKIFPYPFALEIALKEIKKGHRVIFFGD
                     DLNLIQNLKEYCSFNKQAQENIFSIDDIIAFEQLDNGYDRLLFELVLMSKSEYIFGSG
                     TTGFSRCASWIENKIFINIFDHLSLIEQYEIILKYIDIENIDDLYRSCNYFFLFLLSE
                     QLNLNFDIKLRYLSKSLRYDSGSLNSEVFYINLLLQNEKFKEADDRLEQVICKNKKKF
                     FDLLLGYGQNPTFPYDIYMNYYFKDFDQYSNIFYVACRIFSEFNIPESRVNTYYPNFH
                     PIIFDQFKMFIFKDLPKSDQEIGAVKKIRNHLAYKLGVAAIKNSKSLWGYIRMPYVLS
                     YIRDMHKESQNKMDKKSISLEYYSDYESALKEKEGFVYKLGQIIIKAHKNWHKGGYIM
                     LWFEVKKLKKEFKKGK"
     gene            5702..6247
                     /locus_tag="SB815_001378"
     CDS             5702..6247
                     /locus_tag="SB815_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEG0907097.1"
                     /translation="MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTDEYLSKLV
                     PDGIKFKHDKFINSHFNVLRGIHGDVKTYKLVTCVYGEVHQVVVDCRKDSPTYLKWEK
                     FIISYKNQQLILLPPNMGNSHYVSSKEAVYYYKLAYEGEYMDAPDQFTYAWNDERIGI
                     DWPTNTPILSDRDILATKNKG"
     gene            6251..>6531
                     /locus_tag="SB815_001379"
     CDS             6251..>6531
                     /locus_tag="SB815_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907098.1"
                     /translation="MEKLLKELNNNIKLSNQLSYQILMSNIISNLDIDKKDKEILLLL
                     LQARDRNYIRINNNEQCYQNIINYLNLIRPLELPLCDLLRIGGNGDGGYV"
BASE COUNT         2448 a          644 c         1085 g         2354 t
ORIGIN      
        1 ttatcgcaat taaaaaaaga gcactataaa gtattagatt ttcatttaag aaaaattaca
       61 cctcaagctt ttttagagat tgttgaaatt catttagccg aatcatgtaa tttaaattgt
      121 tttggttgta atcatttttc acaaatagct gaaaaagaat ttccagatat agaaattttt
      181 aaaaaagata tgcaaagact ttcagaaata tctaaaggta ttgtcggaac ttttagattg
      241 atgggtggcg aacctctttt aaatcccaat tgtatacagt tttttgacat tacaagatat
      301 ttttttccaa aaagtgccat ttggttggta actaatggta ttttacttga taagcaaaat
      361 gaggattttt ggaattcatg ccaaaggaat aaaatgcaaa ttcgtccaac aaagtatcct
      421 ataaaaatta attgggattt gattaaagat aagtgtgatc aatatgatat ccccttgata
      481 ttttttaaca atggagagtt ggaaaaaact tcttggaaat tttctctaga tccttctgga
      541 aattgtgata attaccatag ttttacaaat tgtagtatgg caaatcactg tgttcagttt
      601 aaagatggaa agctatttac ttgtaccttt cctgcacatg tacagcattt taataaaaag
      661 tatggaaatc attttgaagt ttgcgaattt gactttattg atatttataa agccaaggat
      721 tatcaagaaa ttttattttt tctttctaag cctattcctt tttgtagata ttgcaaggta
      781 tcacaatggg cagaaattgg aaaatggcgt tctagcaata aaacaaaaca tgaatattta
      841 atttgaaagt gtattatgat aaaaaaaatt cttcttatta ctccagaact agaatataca
      901 ggagctttaa atagttttaa aagaatatgt gaagtattat tgaataataa atatgctgta
      961 gatatttgga cctataatga aggaccttat attagtgagt ttgataaatt aggcgtatat
     1021 gttgaagtta tttcagaaga tgatattgat tctaaatggg tgcatgaaag aatttcaaaa
     1081 tattcattgg tcatagcaaa tactatagta gtatataaat gtgttgagtt gatccaaaat
     1141 ttaactcctg ttgtttggta tattagagag gctgaaaatc ttcctgattt tttttggaag
     1201 ccagaaagga agttggcttt agaaaaagct aaaaaacttt atgtggttag tgagtatgca
     1261 aaggatttta taattcataa ttataataaa aatgtagagg ttttacataa ttatgtagat
     1321 gatgtttttt atgaaaagca tgacgatttt ttaaaacaga taaagtcaga taaattaaaa
     1381 tttttagctt tagggactat tgaaaaaaga aaaggttatg atgtgttgtt acaagctttc
     1441 attgatcttc cagtagatat aagggatcaa tgtgagcttc attttgctgg aagattttgg
     1501 gagggagcta aagatttttt ccccaagatt ttatcattag ccaaaaaatt tccaaacatt
     1561 ttttatcacg gggaattaag agatagaaaa aaaatacact ctttgatttt ccaatgcaat
     1621 gttatggttg taccatctag agatgaatcg tgctctttgg ttgcattgga aggtgcgatg
     1681 atgtctaaac cattgatatt aactgaaaat attggagcta aatatatttt agatgaaaat
     1741 agtggatggt tggttaaaac cggtagcgta gattctttaa aaaatgcttt tatacaagcg
     1801 tataaaaata aaaataagtt agatgcaatg ggtgcaaatt ctaggaataa ttatcttcaa
     1861 acatccactt atgaaattta tgaaaaaaat attttaaaaa tggttcgaga tgaaatttgt
     1921 aaaaatcaat atttatatcg tattaatcaa gaaaattatg tacttttttc ttttgatatt
     1981 tttgacactt taatttctag aaatatagct aaacctagtg ctgtattttt aataatgaaa
     2041 caaaaaatga gaaatatgga ttttccttta aatttagtta aaaattttga tagaataaga
     2101 gtggaggttg agcagtatta ttatcgaaat gtgtgtaaaa ataaatatga agataccaat
     2161 tttgatgaaa tttataattt attacagcag aatttttctt taagttttca acaaaaagag
     2221 gagttaatga aactcgaaat taatactgaa aaagagacat tatatccaat taaaaaaaat
     2281 atagaattgg ttgaagagct tattaaaaat gaaaagagag ttgttttaat ttctgatatg
     2341 tattttagtt cttctattat tagaaccttt ttaaataaat tttcccctat ttttaataat
     2401 attccaatat atatgtcatc agagtttaga ttaaaaaaaa atagcgggaa tttgtttaag
     2461 gctatattaa atttagaaaa agttgatcca aaaaaatgga ttcattgcgg cgataattgg
     2521 gtgggggatt atcttaagcc ctcaaatttg gaaatttcta caaattttta tattaatcag
     2581 ttgcttccat atgaagaatt tgcattaaac cgtaattcat tagatatgga tttgcaaaaa
     2641 ataattggaa tatctaaaaa gataagactt gagaatacct tgactaactt gcaagagata
     2701 ggagtttcat ttggtgcccc tatgctatta ccttatgttc agtggatttt aaatattgct
     2761 ttaaaaaact ctattagatg tttatatttt atagcaagag atggttatgt attgcaaaaa
     2821 atgaccgata tgttaattca agcaaaaaaa attaatatta aaacaaaata cttgtatggt
     2881 tctcgagagt cttggagaga gccttttaga aataaagata agttaaaaat acagctaatt
     2941 gatgagtatt tggatcaaga aattgataaa caagaaattt ttgcttttgt tgagtgctgt
     3001 ggcacgggtg aaactttgga ttatattgta aaaagaattg aaagtaatca acaatttaaa
     3061 aatatgtttt ttggcagttt atatttatat cgtagtaaat taaataaaac taaaactcaa
     3121 tctttattta tgctcccttt aaatgaaaat tatacttatg gtatagaatt atttgttcgt
     3181 tcgttacaag gtcaggtttt aggatatgat aaaaaagatg gtagagtgat tcctgttttt
     3241 gattttttag aaggggaggc tttgcaaaag tttagatatg atgaatatat cgatggggta
     3301 atgcttttta tggagtatat agtaaaaact gataattatg aaaaaatctt tgacaatatg
     3361 aatgtaacta ttttatatct gaattattta agcaataatt atatagataa aaaatttatc
     3421 gaaattatgg gaaatgttcc atttattctt aatggagtaa aagatagagt gggtattttc
     3481 gctcctaggt taaacaacaa aataacatta gatcaaaaaa attctttttt taactggtct
     3541 gttttaagaa gttgtaaaga tattagagtt aaatataata tggataatga ttgttatttt
     3601 ggccttattg gtgctgtaga tattataaaa tctcatcttt cttataaatt gggtaaagtt
     3661 atacttttaa atattaaaaa tcctttaaaa tggataaagc tgatagtttt aattcctatt
     3721 ttaatttttt ctcatcatga gcaaaaaaaa atttatttaa ctgaaaaaaa aataaacata
     3781 gatttgagtt tttataaaga ttacaatgag gcaattatgg ttagaaattt tttttcctat
     3841 cagcttggag agcttatttt aaaaacatct agaaaatgga atgttttagc tatagtgatt
     3901 ttaccttata agattgcaca gctatataga aagaaattta agaaaggata ataatggata
     3961 attcaaaacc tctcataatt gcaggaaggg atgatggatt tggagagaga atgagagcat
     4021 tattaaatgc tctttatata tctaaaaaat ttggttttaa attcggtttt gtatggagag
     4081 atattaataa tattcaaaat ttattagatg gtaaagtatt gattccttgg gcaaatttgc
     4141 caactagaga gtatttgttt gatcaagatt ttattaaaag ttattataga caagatatag
     4201 aattcgctta tgaaacacca gtattgtgga gtttgtatag acaaagcatt aaaaatattt
     4261 tgaaaaaacc ttacgaaaaa gaatgggggt ggtattcaac tcaaggtgat cttagtgaat
     4321 attttacaga tgttgacgag ggcgaatata gaacagagtt ggtttcatgt tggaaacaaa
     4381 tagatttttc atctcatgtt aaaaaaattt ttgaaaaagc tcatagtaaa tttttagaca
     4441 ttggaaagtt tgttgctata catattagaa caggtgaggt tattcatgat gaattttata
     4501 gaaatatact atatcattgt agatataaaa tctttccata cccatttgct ttagagattg
     4561 ctctaaaaga aataaaaaaa ggacatcgtg ttattttttt tggagatgat cttaatttaa
     4621 tacagaattt aaaagaatat tgttctttca ataaacaagc tcaagaaaat attttttcaa
     4681 tagatgatat catagctttc gaacaattag ataatggata tgatagatta ctttttgaat
     4741 tggttttaat gtctaaatct gagtatatat ttggttctgg gacaacagga ttttcaagat
     4801 gtgctagttg gatagaaaat aaaattttta tcaatatatt tgatcatttg tcgctcattg
     4861 aacaatatga gattatttta aaatatattg atattgaaaa tattgatgac ttgtatcgat
     4921 cgtgcaatta ttttttcctt tttttacttt cggaacaatt gaatttaaat tttgatataa
     4981 aattaagata tttaagtaaa tctttaaggt atgattctgg tagcttaaat tctgaagtgt
     5041 tttatattaa tttgttgttg caaaatgaaa aatttaaaga agcagatgat aggttggagc
     5101 aagtaatttg taaaaataaa aaaaagtttt tcgacttatt gctaggatat ggccaaaatc
     5161 caacttttcc ttacgatatt tatatgaatt attattttaa agattttgat cagtatagta
     5221 atattttcta tgttgcatgt aggatttttt ctgaatttaa tattccagaa tctagggtca
     5281 atacttatta tcctaatttt catcctataa tatttgatca atttaaaatg tttattttta
     5341 aagatcttcc taaaagcgat caagaaatag gtgctgtaaa aaagattcgt aatcatttag
     5401 cttataaact tggcgttgct gctattaaaa attctaaatc tttatgggga tatataagga
     5461 tgccatatgt tttgtcttac ataagagata tgcataaaga aagccaaaat aaaatggata
     5521 aaaaatctat tagtttagaa tattattctg attatgagtc ggctttaaaa gaaaaagagg
     5581 gttttgttta taaattagga cagattataa tcaaagctca taaaaattgg cataaaggag
     5641 gatatattat gttgtggttt gaggttaaaa aattaaaaaa agaatttaaa aaaggaaaat
     5701 aatggcaata gaatttgata tacaagaatc aaaaatttta aaaggagtgt atattataac
     5761 tcctaataaa tttagagatt taagaggtga aatttggaca gcttttacag atgaatattt
     5821 aagcaagttg gttccagatg gaattaaatt taagcatgac aaatttataa attcccattt
     5881 taatgtttta cgtggaatac acggagatgt gaaaacttac aaacttgtaa cttgtgtcta
     5941 tggagaagtg catcaagttg tggttgattg cagaaaagat tccccaactt atttaaaatg
     6001 ggagaaattt attataagtt ataaaaatca gcaacttatt ttattaccac caaatatggg
     6061 aaattctcat tatgtgagtt caaaggaagc agtgtattat tataaacttg cttatgaggg
     6121 ggaatatatg gatgcacctg atcaatttac ttatgcatgg aatgatgaaa gaattggtat
     6181 agattggcca acaaatacgc ctattctttc cgatcgcgat attcttgcaa ctaaaaataa
     6241 aggataaatt atggaaaaat tattaaaaga attaaataat aatattaaac ttagcaatca
     6301 attgtcctat caaatcttaa tgtcaaatat tatttcgaat ttagatattg ataaaaaaga
     6361 taaagaaatt ttacttttat tattacaagc aagagataga aattatattc gtataaataa
     6421 taatgaacaa tgttatcaaa atattataaa ttatttaaat ctcattcgac ctttggaatt
     6481 gcctttgtgt gatttgttaa gaataggtgg taatggagat ggtggttatg t
//
LOCUS       DARBAR010000091         6494 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.091, whole genome shotgun sequence.
ACCESSION   DARBAR010000091 DARBAR010000000
VERSION     DARBAR010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6494
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.091"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..1276
                     /locus_tag="SB815_001380"
     CDS             <1..1276
                     /locus_tag="SB815_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HEG0907099.1"
                     /translation="YFAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILN
                     FILLGILSFYTALHYYFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQ
                     KNFNQKTSFMLFLLLILIESDKALANILLTLMRNSIIETHAFLVSFVGKSNYFGVFGI
                     YVYLIFITFLAFLSLKIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVVSFC
                     IVLYFFMVSSKPLTIDEPKEILPDKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFL
                     INKREDKDSPVAVFDACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLK
                     YEYDGNKITIDVKDVIAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYSYKGVTYYFS
                     NQNNYEEFKKDPTKYVEENEAQFLIQRRNDVG"
     gene            1263..2555
                     /locus_tag="SB815_001381"
     CDS             1263..2555
                     /locus_tag="SB815_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0907100.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGAYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIKFIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSTEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALLGFIFGTALSQIISLSIFGYFIDIA
                     FVALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            2545..3663
                     /locus_tag="SB815_001382"
     CDS             2545..3663
                     /locus_tag="SB815_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEG0907101.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDIKLSKELKAYGANVMISPKQDENFISNTEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            3660..4313
                     /locus_tag="SB815_001383"
     CDS             3660..4313
                     /locus_tag="SB815_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0907102.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            4310..4798
                     /locus_tag="SB815_001384"
     CDS             4310..4798
                     /locus_tag="SB815_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG0907103.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            4759..5262
                     /gene="traF"
                     /locus_tag="SB815_001385"
     CDS             4759..5262
                     /gene="traF"
                     /locus_tag="SB815_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HEG0907104.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFALVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(5272..5709)
                     /locus_tag="SB815_001386"
     CDS             complement(5272..5709)
                     /locus_tag="SB815_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HEG0907105.1"
                     /translation="MKKTILTILFLLTLTQAKEIQIYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIAWLLENKPKDVIGI
                     SAPGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
     gene            complement(6008..6424)
                     /locus_tag="SB815_001387"
     CDS             complement(6008..6424)
                     /locus_tag="SB815_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907106.1"
                     /translation="MKKLGLVLAVLVALNVSAFADLIVINKKDLVPVSASEMQNKYFQ
                     ESIKSTLTEPLFKKATFYEADIVAKVDPRTYNSTQAIIQKEYSDKSNYVYYKQVLILT
                     SDGKRARLSTLSCEIASFDKKGYLCGGTADHNYSIK"
BASE COUNT         2253 a          993 c          994 g         2254 t
ORIGIN      
        1 atattttgct ttttttatcg cagcacaatt tttaaaaacc gaaaatttaa tctttaattt
       61 tgattttgtt tttataggtt tattgctagt aagctttata ttttattttt ggaaaaaaat
      121 tgaaatttta aattttattt tattgggaat tttaagtttt tacaccgctt tgcattatta
      181 ttttttaagt caagatttcc ctatttttac tagctcttta atcgatagcg aaggtataag
      241 ttctttaggt tttattgctt tagccttgct tgtttgtatt ttgattttct tctttttaaa
      301 atggcaaaaa aattttaatc aaaaaacaag ctttatgctg tttttactgc ttatccttat
      361 agaaagcgat aaagctctag ccaatatctt gcttacttta atgcgaaatt ccatcataga
      421 aactcatgct tttttggtga gttttgtagg aaaaagtaat tattttggtg tttttggaat
      481 ttatgtttat ttaattttca tcactttttt agcattctta agcttaaaaa ttcgcaaaaa
      541 aaatataagc aaaaaacaaa ttttagatat aaattatcgc aaaaacgaag ctaaaacaag
      601 tcttattaat cgctattttt ccagtgtttt tatctcctgt gttgtaagtt tttgcattgt
      661 tttatacttt tttatggtaa gctctaagcc tttaaccata gatgagccta aagaaatttt
      721 acccgataag aatggcaaat ttatctttga tatagctctt ttaagggaca acaaactcca
      781 ccgctttgct tatatcagtg ctgaaggcaa agtgataagg ttttttctta tcaacaaaag
      841 agaagataag gattctcctg tagctgtttt tgatgcttgt atgatttgtg gagatatggg
      901 ctatatcaaa aaagatggac aactcatttg catttcttgc aatgtgcgta ttttcttgcc
      961 aagtgtaggt aaaagcgggg gttgcaatcc tatcccactc aaatacgaat acgatggtaa
     1021 caaaatcacc atagatgtta aagatgtaat agcaggatct aattatttta gtcaaatcaa
     1081 agaaattgaa gtgcaagatc ctgtatcaaa aacaaaggtt ataaacaccc aagctccttt
     1141 ttcttatagc tataaagggg ttacttatta tttttcaaat caaaacaact atgaagaatt
     1201 taaaaaagat cctacaaaat atgtagaaga aaacgaagcc caatttttaa tccaaaggag
     1261 aaatgatgtt ggctaaaatg atttttaact ctatatttaa aaacaaaatt caaaaatttt
     1321 tagcctttct tacttgtttt ttagccacgc ttttgctctc tactatgcta aatattaccc
     1381 taagtatagg tgatgaagta actaaacaac tcaaaagcta tggctctaat atccttgttt
     1441 tacccaaagg ctcaagcctt agtatagaaa taggtaatga actttatgaa cccttaaaaa
     1501 acaaaaacta cctagaagaa aaaaatttat atatgattaa agacatttat tggcgtaaca
     1561 acatcaccgc acttgctcct tttttggaag gtaaaatcac aattgaaaac tcccagcaaa
     1621 aagcacttat ttatggtgct tattttcaaa aagccataaa aattaaagat gatgatgatt
     1681 ttatcacagg tataaaaagt ctttatcctt atttagcagt gcaaggagaa tgggcaaaag
     1741 atgatagcaa tgaaatcatg ctaggcgaag actttgctaa aaacaataaa ctaaaattag
     1801 gagatactat caaattcata ggagaaaaca atcaaagcaa agaagcaaaa atcgtaggca
     1861 ttttacttca tgccaatcct aaaatgtcaa ataaaatcat cgctccttta aatttagctc
     1921 aagatttact caacaaacaa gggctttact caagtacaga agtaagagct tttaccatac
     1981 ctgaatcagc cctttctgaa aaagtacgtc gcatgggcga agaaaaatta gatcagttag
     2041 aatatgacaa atggtattgc tcagcttatg taggctcaat cgctagtcaa attagcgatg
     2101 gcttgccagg tgctgatgca aaagctctaa atgctataag cgatgctcaa agcttggtgg
     2161 ttaaaaagat ccaatcctta atgggcatta cttgcattat ttgtcttatt gttgcaagta
     2221 ttgcgatttc aagtctaatg agttctgaaa ttcatcgtag aaaaaaagaa ataggacttt
     2281 taaaagtact tggtgctaat acttttcaaa tttatctcat ctttgctagt gaaaatttaa
     2341 tcgtagcttt atttgctgct ttacttggat ttatttttgg cacagcactt tctcaaatca
     2401 tcagtcttag tatttttgga tattttattg atatagcctt tgtagcttta cctttaagct
     2461 ttatttttgc aggacttatt gccttacttg gttgcttact tcctatcaaa aatatcacac
     2521 aactttcagc tgcaggagtg ctttatggta gataagtttt tcctcaatga gctttttaaa
     2581 agcattagct tttcttatca aagacttttt attatagttt taagtgtttt tataggagca
     2641 cttacttgct cagctttttt aaatatttat tttgatatcg acatcaaact ttctaaagaa
     2701 ttaaaagctt atggagcaaa tgtaatgata agtcccaagc aggatgaaaa ttttatctcc
     2761 aatactgagt atgaaaaaat aaaagaaaat ttaaaggcta gagctttaac tccttttttg
     2821 tatgattttt taaatttagg cagtacaagc ggggtggttt taggcactga ttttagggct
     2881 ttaaaaatca ctaaaccttt tttagaagtt aaagaaggaa gcttttctct aaatgatttt
     2941 gatgaaaatt cagccttttt aggagttaat ttagccaagc aactaggcct aaaagcaggc
     3001 aatgaacttc aaatttataa tccaaacaac ggaaaaagca taaaacttac cataaaaggc
     3061 atactttcaa gcaatgatga atttgatagc attgttttag cccctttaag cgtggtgcaa
     3121 aatttaagcg atagagccgg tattaactat gctaatgctg tagtttatgg aaattttgat
     3181 gaagttaaag ccaaaacaca agcaatcagc aatgaattca tcgatgcaaa acctatatct
     3241 tcagtatcct taagtgaagg tttagtgctt ggaaaaatca aagctttaat gtttttaatc
     3301 atacttgtgg tattgatcat agttactact agcgttaata caactttaag ttctattata
     3361 ttttctcgca aaaaagaaat cgcactgcgt ttagccttgg gtgcgaaaaa aagtgaaatt
     3421 tttaaacttt ttgctagtga atgctttata gtaagttttt ttgctagttt aatcggagct
     3481 ttttgtggga tatttttagc caatgtcttt ggttatttaa tttttaattc tagtattgat
     3541 tttagattta tagctgtttt tatagcctta atcatttctt tgatttttgc ctttttggct
     3601 gcattttttc ctataaaaag agcattaaaa atcaatgtgt gtgaaaattt gaaaggtgaa
     3661 tgatgaaaaa agaacttatt aaaataaaca atttaaataa agaatttggc aaagttaaag
     3721 ccttaaacaa tatcaactta agcgtctatg aaggagaatg gcttgccatc atgggtccat
     3781 caggaagtgg aaaatcaaca cttttaaaca tactatcgct catggatact ccaagctctg
     3841 gagagtatat cttggataat gaaaacctag agcaaatgga tgaagagcaa aaaatcacct
     3901 tgcgtcgtga aaaaataggg cttgtctttc aacaatttca tcttatcccc tatcttaacg
     3961 ccttagaaaa tgttatgctc tctcagtatt atcactcaag tgtagatgaa gaagatgcca
     4021 aaatggttct tgaaaaagta ggactttcgc atagactcac tcatttacct agccaattaa
     4081 gtggcggaga acaacaaaga gtttgtatag caagagcttt aatcaacaac ccagagcttt
     4141 tactcgcaga tgaacccaca ggaaatttag atgaagccaa tgaacaaatc gttcttcaaa
     4201 ccttgcaaaa attaaaaaat gaaggtaaaa ccatagtttt aatcacacac aatcctgatt
     4261 tagccaaatt cgcagatcga acccttatct tacaacatgg ggtgttaaaa tgaaaaaaag
     4321 ccttttaatc ttaagcattt tgtttttact caatgcttgt tcttttgaaa attcaaaaga
     4381 tactggaaaa gttggagaaa aaagcgctga aatttcagct aaagatactt taggaaaagc
     4441 tgtaaaactt gctgatgata atacaagttt aaaagtctta gtcttttttc aaaatggctg
     4501 cccttcttgc ttaaaagaac tcccttcttt agatgaattc atacaaaatc accccaataa
     4561 aatcagtgtt tatgctataa attccatcga taatgccaat gtggttaagg ttttagccga
     4621 acaatttgac tttaaaaatg taaaagtttt aaaagacgat cttaaaatca ccaatgatcg
     4681 ttacgctgtg tttgcaaccc ctactaccat catcattaaa gatgggatga taaaagatag
     4741 aattttagga gaaaaaccat gggaattttt cgaatccaag cttatttctt tgctttaatc
     4801 atagctttat tttttgtagc ttgtgatagt ggagaaaatt ttaaagcttt aaatagcgat
     4861 aaaacctata attttgccta caatggtttt gaaaaaagcc taaaactaaa tgataaagca
     4921 caaaattttg ccttagtatt tttcacaaaa gattgcggag tttgcaaaga acaaattcct
     4981 attttacaga atttggctaa aaattatgat tttaatatct ttgtggtttt aggcgatgca
     5041 aacgatgcaa acgatgcaaa agcttgggct gatgaaaaag gtttatctaa tttagcaatg
     5101 ttttatgaaa aaagagcagc taaatacctt tcaagtgcca ttggggaaat atatggagta
     5161 cctgtgctta gttttttcaa agaaggaaaa atggatgaaa aattcatagg cttaactcct
     5221 tatagcatac ttgaaaaaga aatcaaaaaa gtaaaaagct aaaaatttac tttaaagctt
     5281 tttatcccct ataaaatatc cataaagctc atagcttcca tcttttttca tcaaaattac
     5341 aggatatttt tcactataac cttgttccat tcctggactt ccttgcggca tgccaggagc
     5401 tgaaattcct ataacatctt taggtttgtt ttcaagcaac catgctatag cactttcagg
     5461 aacatgccct tcaatagcat agccttcaat cacacctgta tggcaacttt gatactcatc
     5521 ttttataccc attttttctt tgattttaag aaaatcattg gttttatgaa cactaacctc
     5581 ataaccctta gctttcatat aatcagccca aagatcacaa cagccacaag taggactttc
     5641 ataaatttgt atttccttag cctgcgtaag agtgagtaaa aaaagaatgg ttaaaattgt
     5701 ttttttcata attgctatcc taagtaaaaa atatataata atacttttat aaagttaata
     5761 tcatcacatt tttaacacta aaaatgaatt tacaaaaatt taatcaagaa aagactttta
     5821 atgagtgttg attttgtctt tgcagcaaag atataaaaga taaaacgatt taaaaaacta
     5881 gaaattttta acttaaaaag cttaaaattt agatatattt tatacttact atgttttttc
     5941 atagtatgtt ctaatggtgg atttccgcca agagtgaaaa ctcaaggcgg atttttattt
     6001 gcaatattta cttaatagaa taattatgat cagctgtgcc tccacataaa taccccttct
     6061 tatcaaaact tgcaatttcg caagaaagag tagataatct agctctttta ccatcactag
     6121 ttaatataag aacttgttta taataaacat aattgctttt atctgaatat tctttttgta
     6181 ttatagcttg agttgaatta taagttcttg gatcaacttt tgcaacaata tctgcttcat
     6241 aaaaagttgc ctttttaaaa agtggctcag ttaaagttga ttttatactc tcttggaaat
     6301 atttgttttg catttcgctt gctgaaactg gaactaaatc ttttttattg ataactatca
     6361 aatctgcaaa tgctgacaca tttaaagcaa ctaaaactgc taaaactaaa cctaattttt
     6421 tcattttatc tccttgaatt gaattttgta tatttgaatt atttttcaaa tcttttgcaa
     6481 gataattttt aaat
//
LOCUS       DARBAR010000092         6486 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.092, whole genome shotgun sequence.
ACCESSION   DARBAR010000092 DARBAR010000000
VERSION     DARBAR010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6486
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.092"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(31..411)
                     /locus_tag="SB815_001388"
     CDS             complement(31..411)
                     /locus_tag="SB815_001388"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEG0907107.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHRAIF"
     gene            complement(408..1256)
                     /locus_tag="SB815_001389"
     CDS             complement(408..1256)
                     /locus_tag="SB815_001389"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEG0907108.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(1267..2091)
                     /gene="panB"
                     /locus_tag="SB815_001390"
     CDS             complement(1267..2091)
                     /gene="panB"
                     /locus_tag="SB815_001390"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEG0907109.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            2311..3084
                     /locus_tag="SB815_001391"
     CDS             2311..3084
                     /locus_tag="SB815_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HEG0907110.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(3169..4053)
                     /locus_tag="SB815_001392"
     CDS             complement(3169..4053)
                     /locus_tag="SB815_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEG0907111.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(4050..4724)
                     /gene="modB"
                     /locus_tag="SB815_001393"
     CDS             complement(4050..4724)
                     /gene="modB"
                     /locus_tag="SB815_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEG0907112.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(4717..5118)
                     /locus_tag="SB815_001394"
     CDS             complement(4717..5118)
                     /locus_tag="SB815_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HEG0907113.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(5115..5864)
                     /gene="modA"
                     /locus_tag="SB815_001395"
     CDS             complement(5115..5864)
                     /gene="modA"
                     /locus_tag="SB815_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG0907114.1"
                     /translation="MKKFVVFFGILLFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(5915..>6486)
                     /locus_tag="SB815_001396"
     CDS             complement(5915..>6486)
                     /locus_tag="SB815_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase"
                     /protein_id="HEG0907115.1"
                     /translation="EFGCGRGELSKKLQNFITFDEYLKNDILDFKENSSILIFDMNEI
                     AKQDLSKEKFDLIVSNATLQWLDLKRIIPSLRDMLNQNGILLLSTFAEQNLKEIKQST
                     GFGLNYFSLNELEQIFKVYFNEVKITQELIKLSFDNALDVFRHLKLSGVNSLGFYPLN
                     KGFLKEFEEKFQNKLTYHPVFILCKNDIK"
BASE COUNT         2274 a         1058 c          861 g         2293 t
ORIGIN      
        1 gatagaaaaa attacaaaaa tagctagatg ttagaaaata gctctgtgtt tttcataatt
       61 tgttattttt gtagcagtgt tattttcatc cacaaaaaca acttttggtt taaatgtttt
      121 tgcttcttct tcattaaaat cagcataaga catgatgatc accttatctc ccacttctgc
      181 aagacgagcc gcagcaccat ttaagcatac aactccttct tcttgcgtgg ctatggtata
      241 ggtttcaaat ctagcgccat tattgacatt gactacttgg actttttcgt attctaaaat
      301 tccactcgct tgcaataatt tttcatctat acttatactt cctatataat caagcctagc
      361 ttctgttacg cttgcgcgat gtatttttga tttgagtaaa gtgatattca ttttaatcct
      421 tgtactaaaa aattatcaat gagtcttgtt tttccaacaa aagcagccac cgctcctaaa
      481 acattatcag tgatattttc gatattttcc atggtgttaa aatcgactaa ttctatataa
      541 tcgattttga ttagtttttc tttttctaaa atatctttca tagcttggat gatcttagaa
      601 gtattttttt ctccctctcg gactaatttt tcagccaaaa aaatgctttg agatatagct
      661 agtgacgctt ttctttcttc tttgctaaga tatacatttc tagagctttt agctaagcca
      721 tcttcttctc taatgatagg acaaatttga atttttaaat caaaatttaa atcatcaacc
      781 atatgcctaa cgactacgca ttgctgcgcg tctttttgcc ccatatagac tatatcaggg
      841 tttaggatat taaaaaattt agttaaaacc gtgcaaacgc ctctaaaatg ccccggtctt
      901 ttagccccgc aaagtttatc agtgatcgta ttcatatcta cataggtgct aaaattctta
      961 agatacattt gagttgcatc ggggataaaa accatatcaa cgccattatc ttgacacatt
     1021 ttaatgtcgc gttctaaatc tcttggataa ctagaaaaat cttcattagg cccaaattgc
     1081 ataggattta caaagatact tactataacc ttatcttgtg ttttggcatg tttgactaaa
     1141 cttaaatgtc catcgtgtaa aaaacccatg gttggaacat agcctatact aagttgatgt
     1201 gatttccaat cttttacaat ttgttttgct tctttgacag aagtaatgac ttgcatattt
     1261 gtatccttag tataatttat ctaataattc atcatctaaa taatcaaagc tgtgctcttg
     1321 ggaaggaaaa ataccgcttt taacttcatc tctatatttt tcaactccta cttgaggatc
     1381 aattttatca aaatgcttta caaattttgc tttaaaatct ttatttaaac ccaaaagatc
     1441 gtgataaact aaaacttgtc catcgcagta tttgcctgaa cctatgccga ttgttggaat
     1501 ttctaaaata gagcttattt tttgtgctag ttttacaggc acacattcta aaaccaacat
     1561 acaagcaccc gcatcttgca cagcttttgc atcatctata attttttggg ctgattgtaa
     1621 atctttacct tgaaccctat agccacctag catatttaca gcttgtgggg ttagtcctag
     1681 gtgagcaacg acgggtattc ctgattggga aatcaattta atcttacttg cgatttctat
     1741 acccccttcc acttttaccc catttgcgtg gctttctttg ataaatcttg aggcatttaa
     1801 gatagcgtca cgatctgaac tttgataaga cataaaaggc atatcagcaa gtacgaaaga
     1861 ctttttagct ccgcgagaaa cagctttggt aaaaatcaac atttcatcca tagtaacact
     1921 taaagtatct tgcataccaa gtaccgtcat ggctaatgaa tctccaacca atataatatc
     1981 tatatcgcta ttgtctaaaa ttcttgcact atgataatca tacgcactta ccatggttat
     2041 tttttcattt ttggcctttt tttccaaaaa actaatcata ctttttctca ttttgcatac
     2101 ctcaattttt agctataaaa taataagcaa aaaactagca tataattttt cataaatagt
     2161 aaatgaatga taaagtaagt tatatttaat cgatggattg ctttaatggt tacaatttta
     2221 gaaaatttca gttcatgtta aaggatattt aaagaaaata aagctttaaa aagtattttg
     2281 tttaaaatta tttaaataga aagatatttt atgaaaaaaa taactttatt tttacttttc
     2341 ttaaatttag tgtttgggca agataagata ttaaataatt ggtttaaaga gtataataca
     2401 agcggcactt ttgtttttta tgatggaaaa acttgggcga gtaacgactt ttcaagggct
     2461 atggagactt tctctcccgc ttccactttt aaaattttta atgctctaat tgcacttgat
     2521 agtggtgtga taaaaactaa aaaagaaatt ttttatcact atagaggtga aaaagtattt
     2581 ttatcttctt gggcgcaaga tatgaattta agttcagcta taaaatattc taatgttctt
     2641 gcttttaaag aagtggcaag aagaattggt atcaaaacta tgcaagaata tttaaacaag
     2701 cttcattatg gtaatgctaa aatttccaag atcgatactt tttggcttga caactcacta
     2761 aaaataagcg ctaaagaaca agcaattttg ctttttagac tttcacaaaa tagcttacct
     2821 ttttctcaag aagcaatgaa tagtgttaag gaaatgattt atttaaaaaa tatggaaaat
     2881 ttagagcttt ttggaaaaac aggttttaat gatgagcaaa aaattgcttg gattgtaggt
     2941 tttgtgtatt taaaagatga aaataaatat aaggctttcg cgctaaattt agatattgat
     3001 aaatttgaag atttatataa aagagaaaaa attttagaaa aatatttaga tgaacttgta
     3061 aaaaaagtta aaaatgatgg ctagtgagta tttcgtaaaa tgcaaaaata cttaattgta
     3121 tgatttgcgt acacttaaag tactcattaa aaaattaaat ttttgctctt atttatcaag
     3181 ttttcctacg atgatagggt taaaggcttt tatggatagc aaaagcgtat cgccgatttt
     3241 tacatcttga taagctttta gaaattcctc ttcactaaga gtgattttaa taatatcttg
     3301 atttaaaagc aaggttaaaa ccactaaaat atcacttttt ttaatttcta gcaaagttgc
     3361 acttaagcgt aattttgcgc tgatatttga atgagtaaaa aattcatttt taggaaaatc
     3421 tttaataatt tttccgtttt taagctctaa aattctatga cttaacttat aaatttcagc
     3481 tagatcatga cttaccaata aagtacttat tttaaaatac tctaaaatct tggttaattc
     3541 atcttgtaaa ttggcacgca ttttaaaatc caaagcactc aaaggttcat ctaaaagcaa
     3601 gatttttggt tctcttgcta aagctcttgc taaagctact ctttgtgcct gccccccact
     3661 taaatgttta ggataaattt tagctaaatt ttcaagcttc attaaggcta aaagctcgct
     3721 aacctttgct ttagaactag cggcataggc gatgttttct tttatattca tatttggaaa
     3781 aagcgcataa tcttgaaaaa caaaaccaat ttttcttttt tgtaaagcta aactaaaatt
     3841 ttttgaagaa tcaaaccaaa gttcattatc tacttctata cgccccaatt taggctttat
     3901 aagtcccgct atgattttta aaagagtggt ttttcctgct ccactttcgc caaaaagtgc
     3961 agtaattttt cctgattcta tatctttttt aaaatttaaa tccagtcttc ctttagcggt
     4021 attcatagga tgattgatat caattcttat cattgaaaac tcattttttt attgataaaa
     4081 taaagactaa aaagtactaa aaaagaaaaa ataaacaata taaaagcata ttgatgggct
     4141 aagctatagt ttaagatttc aagttcatca taaatagcta tactagccac taaagtttca
     4201 ccttgtttat gtcctcctat catcatcacg actccaaatt cacccacagt atgggcaaaa
     4261 ctcatcgcac aagcactaaa aattcctgct ttagaattag gtaaaatcac tctaaaaaga
     4321 gtataaattt tacttttacc taaactataa gaagcatcga gcaaatttgg attgatcgat
     4381 gaaaaggcac tttgcaaagg atttaccata aaaggcaaag aaaaaatcaa agaagcaaaa
     4441 acaagacctt caaaactaaa aaccaaagaa agattaaaat attcttttaa aacttgccct
     4501 aaaaaactat tagccgaaaa agttacaagc aaataaaatc ccaaaacact aggaggtaaa
     4561 atcaaaggca aggaaataaa gctttgaagg attgttttaa aaggaaaacg cacaaaactt
     4621 aacaaataag ctaaaaaaac accgataaaa aaaaggataa aagtcgtgat aaaagcaagt
     4681 ttaaaagtaa gataaagggt ttgtaaaaaa gctggatcaa gcactatgac tccttaatac
     4741 aatatcattt gcttttacaa aacaaagcca ttcttgattt tcacaaattt caagttctaa
     4801 agctttttct ttggtgataa tactagaaag ttcattacct ttaaaatcaa aaaatacctg
     4861 atataaaagt ttgccttttt taatttttgt aattttagct aaaaaagaat tttcaacact
     4921 taaaagagtt ttgcttgcgc taaaacaaag ctcatgctct ttaaaaagaa gttctacact
     4981 cacaccaatt tttaaatttt ctaaagattt taattcaagc attaaaacac taaaaatcac
     5041 ttctttagaa agtattttaa caataactat atcctcttga tttaaaagct cacaaatttg
     5101 tccttttata aggttcatgg tgtgctaaat ccgtattttt taaaaatttc ttttgctttt
     5161 gaagagccaa taaattcgtt aaattcaaag gctaattttt tatccttagc gtattttgtg
     5221 atgacataac tttgctctaa agggctaaaa tactttgcat caattataac agccttaccc
     5281 ttaggatgat tgatagaaga aactaaagaa taagccacta tagctatatc tgaatttttg
     5341 ctatctacat gtaaaacagg cactgagata ttttcgccta aaacgatttt atccttaaga
     5401 agctcattta aacccaaatt ttcaagcact tctttagctg ctactccata aggagctact
     5461 ttaggattgg ctatgcttag atgcgtgatt ttgtttgcct tttcttttaa attttcaacg
     5521 cctccttgga gtaaattttc atccaagcta tacaaagcca aaactcccaa aacataaact
     5581 tttggtttta ttaaagcatt tttatcatca taaatagcct tagcatattt agtatccgct
     5641 gaaaaaaaga gatcaaattc tcttccttgt tttaaaagct cataatattt tccagaagca
     5701 ccaaaaacca attctatttt atcttctgga tgtgttttca aaaactcatc tttaacttca
     5761 ctcatcgcct ttgaagctga agaagctaca aaaatactta aattttgcgc atttaaacac
     5821 gaaacaaaaa gcaaaatccc aaaaaatact acaaactttt tcatttagtt ttccttgtgt
     5881 aaaaatttaa tttttggatt ataacacaaa aaattcattt tatatcattt ttgcataaaa
     5941 taaatacagg atgataagtg agtttgtttt gaaatttttc ttcaaattct tttaaaaaac
     6001 ctttatttaa aggataaaat cctaaagaat ttactccgct taattttaaa tgtctaaaaa
     6061 catctaaagc attatcaaag cttaatttta tgagttcttg agtaattttt acttcattaa
     6121 aatagacttt aaaaatttgc tctaattcat ttaagctaaa ataatttaaa ccaaaacccg
     6181 tgctttgctt gatttctttt aaattttgct ctgcaaaagt agaaagaagt aaaatcccat
     6241 tttgatttag catatctcta agacttggta taatgcgttt taaatcaagc cattgcaaag
     6301 ttgcatttga aacaataaga tcaaatttct ctttacttaa atcctgtttt gcaatttcgt
     6361 tcatatcaaa aattaaaata ctagaatttt ctttaaaatc taaaatatcg ttttttaaat
     6421 actcatcaaa agtaataaaa ttttgaagtt ttttgctcaa ttcacccctg ccacaaccaa
     6481 attcaa
//
LOCUS       DARBAR010000093         6449 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.093, whole genome shotgun sequence.
ACCESSION   DARBAR010000093 DARBAR010000000
VERSION     DARBAR010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6449)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6449)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6449
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.093"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..814
                     /locus_tag="SB815_001397"
     CDS             <1..814
                     /locus_tag="SB815_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0907116.1"
                     /translation="GNFKPNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIKEDI
                     EERIKESLMFLNLDESFLSKHPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFLDKN
                     TTLLFKKTILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFELEN
                     QGVKFCNFIDFSNCKKYKDFKKPPSKIAIDPYKISFFNSKNIPKNNYDFILEKCYIIA
                     LRSRKSDVFIRVSCMDKILEFALEKQEFLRFDLKLYEELSLYFYEDAICFLN"
     gene            952..2925
                     /gene="acs"
                     /locus_tag="SB815_001398"
     CDS             952..2925
                     /gene="acs"
                     /locus_tag="SB815_001398"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEG0907117.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQAFEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPNEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
     gene            3007..3831
                     /gene="galU"
                     /locus_tag="SB815_001399"
     CDS             3007..3831
                     /gene="galU"
                     /locus_tag="SB815_001399"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEG0907118.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEIQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            3825..5045
                     /locus_tag="SB815_001400"
     CDS             3825..5045
                     /locus_tag="SB815_001400"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEG0907119.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            5175..5624
                     /locus_tag="SB815_001401"
     CDS             5175..5624
                     /locus_tag="SB815_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEG0907120.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            5689..>6449
                     /locus_tag="SB815_001402"
     CDS             5689..>6449
                     /locus_tag="SB815_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0907121.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINI
                     PIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKN
                     ILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYV
                     IYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLF"
BASE COUNT         2353 a          797 c         1164 g         2135 t
ORIGIN      
        1 tggaaatttt aaacctaata ataagcaaaa gcgtgaaatt tatttgcttt ttccagagcc
       61 tattttgtta aatcgtagtg taagggcaaa ttttttattt accttaaaaa cttatgggat
      121 taaagaagat attgaagaac gcataaaaga aagtttgatg tttttaaatt tagatgaaag
      181 ttttttaagt aaacatccta atgaactttc atcaggacaa agtcaaaaaa tagcttttgc
      241 tatagcttta agcgtaagag cgaagtatta tttacttgat gaaccaagtg cttttttgga
      301 taaaaatact acacttttat ttaaaaaaac tattcttaaa atgcatgaaa atttcaatac
      361 aggtttttta atcgcaagtc atgataaaca ttttttagat tctttggcgc aaaaaaaact
      421 ttatttgcac agtggagaaa ttttagaatt tgaaaatact aatgtttttg aactagaaaa
      481 tcaaggtgtg aaattttgta attttataga ttttagtaat tgtaaaaaat ataaagattt
      541 taaaaaacct ccaagcaaaa ttgctattga tccttataaa atttcttttt ttaattctaa
      601 aaatattcca aaaaataatt atgattttat tttagaaaaa tgttatatta tagcacttag
      661 aagtaggaaa agtgatgttt ttataagggt aagttgtatg gataaaattt tagaatttgc
      721 cttggaaaaa caagaatttt taagattcga tttaaaatta tacgaagaac ttagtcttta
      781 tttttatgaa gatgcaatat gtttcttaaa ttaacataca ttataaaatt taaataaaat
      841 attacaaata ttcccatttt ttataaaatt tatcttaatt attttttaaa tttgtattta
      901 atacaaataa actcttatat aatgtttaaa aacaaccata aaggagtttt tatgcttaat
      961 caaaataatc aagagctttt taagccaagt aaagaatttt ctcgtaatgc tcgtataaaa
     1021 aatttatgtg aatactatga tttatgcgat gaagccaagg aagattttga aggtttttgg
     1081 aaaagacaag catttgagaa gattgagtgg ttttcgcctt tttcaagagt gctaaatgag
     1141 gataaagctc cattttataa atggtttgaa ggtggaactt taaatgtaag ttatcaatgt
     1201 cttgatcgtc atatgaaaac aagacgcaat aaagctgctt tgatttttga aggtgaaatg
     1261 ggggattatg aagtttatac ttatagaaga ttattgcatg aaacttgcaa ggcggccaat
     1321 ttgcttaaaa aattcggagt aaaaaaaggc gatagggttg taatttatat gcctatgatt
     1381 ccagaaacag ctatagtaat gttagcttgt gcaaggattg gggctattca tagtgtagta
     1441 tttggagggt tttctcctga agccttaaga gatagaatta tagatgcagg agctaaactt
     1501 gtagtaacgg ctgatggtgc ttttcgtcgt ggcaaacctt atatgttaaa acctgcagta
     1561 gataaggctt taagtgaagg gtgtgaaagt gtagaaaaag tacttatagt tatacgcaat
     1621 aatgagccta tagaatatat taaaggaagg gactatgttt ataacgaact tgtgaaaaat
     1681 gagtcttata agtgtgaacc cgaaattatg gatagtgagg atttgttgtt tttgctttac
     1741 acttcaggat caacgggcaa gccaaaagga gttatgcatg caagtgcagg atatatactt
     1801 tgggcacaaa tgactatgga atgggttttt gatattaaag attatgataa ttattggtgt
     1861 agtgctgatg tgggttggat tacaggacat acttatgtag tttatgggcc tttagcatgt
     1921 ggggcaacga ctataatgca tgaaggaact cctacttatc caaattctgg gcgttggtgg
     1981 agaatgatag aagagtatca aataagcaaa ttctacactt cgccaactgc cataagaatg
     2041 cttcatgctg atgcacctaa tgagccaaga aaatatgatt taagtacgct tgaagtgctt
     2101 ggaacggttg gagagcctat caatcctagt gcttggaagt ggttttatga tgaaataggg
     2161 ggaactaaaa gtcctatagt cgatacttgg tggcaaacag aaacaggtgg gcatatgatc
     2221 acgcctttac caggcgccac tcctttaaaa ccaggttgtg ccaccttgcc tttgccaggg
     2281 atttttgcgg aagttattga tgaagaaggc aataaaaaag atgaaggtga agatgggttg
     2341 ctttgtataa ctaaaccttg gccttcgatg attcgtggaa tttggggcaa tgatgaacgc
     2401 tatatagaaa gttatttttc tcaagctaaa aaagatggaa aagctgtata ttttagtggc
     2461 gatggtgctt tttatgataa aaatggttat attaccatca caggaagaac agatgatgtg
     2521 gttaatgttg caggacatcg tataggaacg gctgaaattg aaagcgctat tgctaaacat
     2581 ccaagtgtag cagaatcagc tgtagtgagt attttggata cgattaaggg cgagtcattg
     2641 tttgcttttg tggttttaag tcctgcatcc agttgtgatc ttggcggagc tatagaaact
     2701 ttaaaagaac ttaatgacat tttaagagta gaaataggac ctatagctaa aatagaaaaa
     2761 attctttata ctccaggttt gccaaaaact agaagtggta aaataatgag aagaatttta
     2821 agaactatag caagaggcga agaaatcaaa caggatattt caacacttga agattctaaa
     2881 gtagtagaaa ccattgttaa attagctaag gcagagtttg aataacaagg caaaaagaac
     2941 tttgccttgt tccatgaaaa ttcataaaaa taagctataa tgataaaaaa ataaaaggaa
     3001 atttttatgc ttcaaacttg tattttccct gcggcaggtt atgggacgag atttttacct
     3061 gcaacaaaaa ctttacctaa agagatgtta cctatcttaa ccaagccttt gatccattat
     3121 ggagttgatg aagctttaga agcaggaatg gaaaatatgg gatttgtcac agggcgtgga
     3181 aaaagagctt tggaggatta ttttgatatt tcttatgaac ttgaacatca aatttcaggt
     3241 acaaaaaaag aatacttact tgatgaaatt cgctctttga tcaatcgttg tacctttact
     3301 tttacaagac aaaatcaaat gaaaggctta ggtgatgcgg ttttaaaagg tagacctttg
     3361 gttggcgatg aagcttttgg cgtaattttg gctgacgatt tgtgtgttaa tgaagaaggc
     3421 ttaaatgtta tggctcaaat ggtaaaaatt tatgaaaaat atcgctgcac catcatagct
     3481 gtgatggaag taccaaaaga gcaagtttca aactatggag taatttctgg aaattttgta
     3541 gaagaaaatc ttatcatggt taattctatg atagaaaaac caagtcctga tgaagctcca
     3601 agtaatcttg ctatcatagg aagatatatt ttaactcctg atatttttgg aattttagaa
     3661 aatactaaag caggaaaaaa tggtgaaatt caacttaccg acgcgctttt aactcaagca
     3721 accaatggta tggttttagc ttataaattt caagggaaac gctttgattg tggaagtgta
     3781 gaaggctttg tagaggcgac aaattatttt tacgagaaaa gtaaatgtta aacaatacgc
     3841 ttttttttaa acaaagtgaa attcacacta taagttctta tgcaaatcgt attaatgatg
     3901 aggtaaaaag tggagatata gggtattatc atcttattga cacaagtttg aatttaatcg
     3961 atgagagctt gcaatttatt caagataaag agtatgtaaa aaatatcgtt ttagtgggaa
     4021 tgggaggttc aagttgtggt gtaaaagcct tgcgtgatat gctttttaat gaaaaaagca
     4081 accaaagaga gctttttata ctcgataaca caagctcgca ttcttttaat aagactttag
     4141 aaaaaatcaa gcttgaagaa agtttgtttt taatcatcag caaaacaggt agtactatag
     4201 aagttgtatc gctttttaaa cttcttattg aacattttaa acttgatatg caagaattaa
     4261 aaaaatactt tgtttttatt accgataagg attcaaaact tcatcaagaa ggtgaaaatt
     4321 taggtattaa atgctttttt atccctgcaa atgtaggagg tcgttttagc atactttcag
     4381 ccgtaggtat agttccactt tgtttttgtg gctataatgc caaagctctt ttagaaggag
     4441 ctaaagcttg ttttgaagat ttttttactc acaaaaaaga tgaaatttta caaaaagcct
     4501 atcattattg tacacacaaa aatgccaata tcaatgtact tttttcatat agcgatgctt
     4561 ttaaaggctt taatgaatgg tatatccagc ttattgctga aagtttaggt aaaaagcaag
     4621 gctataaacg cataggttta actcctattg cactcattgg cgcaagagat caacatagtt
     4681 ttttacaact catcatggat ggacctaaaa ataaaactgt aactttttta aaaatcaaag
     4741 acgctcaaaa agcacctatt atccctgata ttcattttaa atttttagat tctttaagta
     4801 ataaagtcaa tcttcacgaa cttttaaacg ctcaatgtga tgcaactatg cacgctttaa
     4861 tcgctgaaaa tttgagtgtt gatgtgatag aacttgaaaa acttgacgct tggcatgcgg
     4921 gatatttgat gtattattat gaacttttta cttcaacttg cggtgttatg ctagggatta
     4981 acacttatga tcaacctggt gtggaagttg gaaagttgat cttaaaaaat atattaaatt
     5041 cttaatcaaa attcattaaa aaagagtata atgatttcaa gttaaaatta taataaaaat
     5101 ttttaattaa taataataat tattatttaa gaattttatg ttataatttt aaaaattaaa
     5161 aaaaggagtc aatcatgtca gttacaaaac aattattaca aatgcaagca gatgctcatc
     5221 atttatgggt taaatttcat aattatcact ggaatgtaaa aggtttgcaa tttttttcta
     5281 tacacgagta cacagaaaaa gcttatgaag aaatggcaga actttttgat agttgtgctg
     5341 aaagagtttt acaacttggc gaaaaagcta tcacttgcca aaaagtttta atggaaaatg
     5401 caaaaagtcc aaaagttgca aaagattgct ttactccgct tgaagtcata gaactgatca
     5461 aacaagatta tgaatatctt ttagcagaat ttaaaaaact caatgaagca gcagaaaaag
     5521 aaagtgatac tacaacagct gcttttgcac aagaaaatat cgcaaaatat gaaaaaagtc
     5581 tttggatgat aggcgctact ttacaaggtg cttgcaaaat gtaatttaag gggctttatg
     5641 ccccaattat acaaactagg ttataatatc cttttttaaa ggataaaatt gaaagtactt
     5701 aatttttttt atgaaaacca ccctaaattt gaagtaagtt atgaaagaaa aaatcaaatt
     5761 tcaaaaccaa atattatcat aaaaggccca cgattttgtg gtaaaaaaac acttattttt
     5821 aattttttat ctcaatttaa agcaagtgaa attttgtttt tagatttata tgatacacgc
     5881 tttgaaaaac aaagtttaga aagacttgct gattttctga atgaaaattt acaaattaaa
     5941 attctttgcc tttataattt ggattttatc cctaatttag aaaaaattaa cattcccatc
     6001 atcttaagta caaatataaa agatttaaat gtaaatgggt ttgaagagct tgaacttgat
     6061 tattttgatt ttgaagaatt tattagtgta agtaagaaaa atttacctat aaataattta
     6121 gtaggtcttt ttttgcaaag tggacgcagt aaatttggag aaaaaaacat acttctaaga
     6181 caaagcttca ctcttttaga attagaaatt ttaaagtatt tagctttaaa tttgggtcag
     6241 caaatcagta tttctaagat atttatagaa ctcaaaaaaa gattaaaaac ttcaaaagat
     6301 agtgtttatc aagctataaa aaaattagaa aatacttatg tgatttatac cttaaaacat
     6361 gatgaaaaaa aacttcaaaa gatttatttt aaagattttg gcctaagaaa taatctttgt
     6421 atttcaaagg atttttcaca tttatttga
//
LOCUS       DARBAR010000094         6438 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.094, whole genome shotgun sequence.
ACCESSION   DARBAR010000094 DARBAR010000000
VERSION     DARBAR010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6438
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.094"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            111..773
                     /gene="sodB"
                     /locus_tag="SB815_001403"
     CDS             111..773
                     /gene="sodB"
                     /locus_tag="SB815_001403"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HEG0907122.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
     gene            842..1532
                     /locus_tag="SB815_001404"
                     /pseudo
     CDS             842..1532
                     /locus_tag="SB815_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881173.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(1545..2750)
                     /locus_tag="SB815_001405"
     CDS             complement(1545..2750)
                     /locus_tag="SB815_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HEG0907123.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     AFIKERLGVQIETAQIDADDSNAVVELIKKTEAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDEFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(2792..3700)
                     /locus_tag="SB815_001406"
     CDS             complement(2792..3700)
                     /locus_tag="SB815_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0907124.1"
                     /translation="MMLEIKNLSKNFGKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAMARGCKLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFCRLKLLY
                     KNIIFFILVSSSYDLEEKISFDIINF"
     gene            complement(3684..5300)
                     /locus_tag="SB815_001407"
     CDS             complement(3684..5300)
                     /locus_tag="SB815_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG0907125.1"
                     /translation="MYKTLKYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSDLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISMGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRIDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALITALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKFFHMSLLGNSLLVLVFAYIIRFLASAIYSLEGGYNKIHLNIDEASLNLRTSYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            complement(5300..6304)
                     /locus_tag="SB815_001408"
     CDS             complement(5300..6304)
                     /locus_tag="SB815_001408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG0907126.1"
                     /translation="MKKIFFMFLTAVSFLGASELNIYSARHYNADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            complement(6301..6432)
                     /locus_tag="SB815_001409"
     CDS             complement(6301..6432)
                     /locus_tag="SB815_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0907127.1"
                     /translation="MSMKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQLKDKI"
BASE COUNT         2339 a         1066 c          850 g         2183 t
ORIGIN      
        1 tagattaaat aaatagaaat tttacccact aagcttttaa gatattttta ctctttttaa
       61 tattattatg gtaatatttt caatatcaaa ctaaaaataa aggagaaatt atgtttgaat
      121 taagaaaatt accttatgat accaatgctt ttggtgattt tttgagtgct gaaactttta
      181 gctatcatca tggaaaacat cacaatactt atgttacaaa tctaaataat cttattaaag
      241 atactgaatt tgcaggtaaa gatcttgtaa gtattatcaa aacttcaaat gggggcgtat
      301 ttaataacgc agctcaagtt tataatcatg atttttattt tgattgcatt aagccaagta
      361 caggctgtgg ctgtggcggt tcatgtcaaa gtatagatgc taatttacaa gcggcactag
      421 aaaaagaatt tggatcttta gaaaatttca aagctgaatt tatcaaaggc gctacaggag
      481 tttttggttc aggatggttt tggttagttt ataatactaa aaatcaaaaa ctagaatttg
      541 taggtacttc aaacgcagct acaccaatta ctgaagataa agttccttta cttgttgtag
      601 atgtttggga acatgcttat tatgtagatc atcgcaatgc acgccctgct tatttagaaa
      661 aattctatgc tcatattaac tgggaatttg ttgcaaaagc ttacgaatgg gctttaaaag
      721 aaggcatggg atcagttagc ttttatgcaa atgaacttca ccctgtaaaa taactttaat
      781 cctttttgtg ctagaatgga ttttgacatt aagtcaacat tctacacaaa aaggggcaaa
      841 aatggataat tctttatctg catatactca aaaatatgac aaagaaggtt atggacttca
      901 atatcctgat ggtcatgtta taagatttta cgagagaatc ttaaaataca aactaagcaa
      961 aacaagtgga aaattacttg attttggttg tggaaatgga gtgcattcta agtattttaa
     1021 aaatataacc gggggggggt atagagcctt atggcattga tatagttcct agtttaaaaa
     1081 aagtttggga aaaagatcct tgcttagatt ctaaaaattt tcacatcata tctcctaatt
     1141 ctagctttaa aaaactcttc aatacaaaaa tggattttat atttgcaaat caaagcttat
     1201 attatcttac aaaacaagct tttaaagaag ctgtgcaaga attttatgaa ctatgcaatg
     1261 aaggagctat tatatttgca accatgatga gcgataaagg ctatagtatg tatgaaagag
     1321 gagaacttat ggataatagc ttgcgtgaag taaaaggatg tccaagtggt agattgagtg
     1381 gttcttcata tatacgcttt actaaagaca tagaagaatt aaaagaagat tttaaacctt
     1441 ttaaaccttt attttgggga gattatgaat taattaatct gtataatttt gaaggcagtg
     1501 tggagcactt tatttatata ggacaaaagt aagtgctcta gcacttactc tcctaagctt
     1561 ggagtcattt cgataatctt ccaaggaagt ccttgagaat tcagctcttc cataaaaggc
     1621 ttagcgtcaa attcttccat attaaacacg ccttttcctt gccaaattcc tttagcgatt
     1681 aatttcgtac ctatcatagc aggaacacct gtagtatagc tcacagcttg cgcgccagtt
     1741 tctttgtaac attcttcatg attgcaaaca ttataaatat aaacttgttt gtcttttcca
     1801 tcttttttac cacgaatcac gcaacctata ttggtataac ctttagtgcg tggtcctaaa
     1861 cttgcaggat caggaagcaa ggtttttaaa aattctatag gaatgatttc tttaccttgg
     1921 tgtatcacag gtttaatccc tagcattcca acattttcaa gacatttcat gtgagttaaa
     1981 taactttgtc caaaagtcat aaaaaagcgt attcttttta aacctttgat attttttacc
     2041 aagctttcaa gttcttcatg ataaagcaaa tagctatctt tcactcctac ttctggataa
     2101 tcccactcca tttttatttc cataggctgc gtttctatcc acttgccatt ttcccaataa
     2161 cgccctttag cagaaacctc acgcagattg atttcagggt taaaattcgt cgcaaaagca
     2221 tagccatgat cacctgcatt gcaatctaaa atatctatat aagaaatttc atcaaataaa
     2281 ttttgctgtg cataagcaca aaaaacatta gttacaccag gatcaaatcc acttcctaaa
     2341 agtcctaaaa ttcctgcttg tttaaactca tcatttctcg cccattgctc tttgtattca
     2401 aatttagcta aatcaggatg ttcataattt gccgtatcta tataatcaat ccctgctttt
     2461 atacaagcat ccattaaact caaatcttga taaggcaaag ccacattgag taaaatttgt
     2521 gcttctgttt tcttgataag ttctacaact gcattgctat catcagcatc aatttgcgcc
     2581 gtttcaattt gaacccctaa acgctctttg ataaaagcag cgatttcatc acatttgctt
     2641 tttgttctac tagctaaagt gattttacta aaagtatcag aattcattgc gcattttaca
     2701 gtagccacac gacttacccc acctgcgcct atgattaaaa gatttttcat tcctatcctt
     2761 caaaaatttt tttgatttta tcaaatttaa actaaaaatt gataatatca aaacttattt
     2821 tctcttctaa atcataactt gagctcacca aaataaaaaa aattatattt ttataaagta
     2881 attttagcct acaaaaagcc cctaaaaatt ctttttgtaa aattttagcc tcaaagcgat
     2941 ttcctatttt aagctctgca taaccaaaaa tataattttt tgaagctatc caagcaaaaa
     3001 attcatcttc taaatcaagt ttttcttcta tgatatttaa atcaggtaaa atttgtgcac
     3061 ttttaaaatc aggtttaaaa taaagctctt taggatttgc atgagctaaa atttttcctt
     3121 tttctaaaaa agcgatttga tcagacatac aataagcatc ttcaatatca tgagttacca
     3181 taatagccgt aatgccttga ttttctatca tttttttcaa ttctcttctt aaatcctgtt
     3241 ttaaattttg atccaaatta gaaaaaggtt catctaaaag caaaagctta catcctcttg
     3301 ccatagctct agcaaaagcc actctttgcg cttgtcctcc tgaaatttca tcgatttttt
     3361 tatatcttaa atcttcaatt tcaaaagttt taagcaaatg atttaaaatt tgatttttat
     3421 cttttttatc ataaagtgca aaaagtatgt ttttctcaac atttaaatga ggaaataaag
     3481 cataattttg aaacatcaaa gccacttcac ctttgcaaga aaacaaatca taagaactag
     3541 cttgttcaag cttagcaata atccttaaaa gcgtgctttt tccgcttcca ctacctccta
     3601 aaatgcttaa aaattctcct tctttgacat gaagattgat attttctaaa gcttgtattt
     3661 ttccaaaatt tttagataaa tttttaattt ctaacatcat ctttccttgt gattttatcc
     3721 atccaaacaa caaccattaa agaaagaaaa acgataaaca aggaaggcaa agctgcatca
     3781 taaattcttt catcacttgc aaaccagaaa gctttaacac ttaaagtttc aaagccaaaa
     3841 ggcgctaaaa ttctacttaa aggaagttct ttaatcgtat caataaaaac aataataaaa
     3901 gccaaaaata aaaaatgttt cattaaaggt gtgtgaattt taaaaaataa aataaaataa
     3961 ctcgttctta aatttaaact tgcttcatca atatttagat gaattttatt atatcctccc
     4021 tctaaagaat aaattgcact cgctaaaaaa cgaattatat aagcaaaaac aagaacaagt
     4081 aaagaatttc ccaataaact catgtgaaaa aatttatcca aaaatacaaa aagcactata
     4141 atgctaatcc ctaaagcagc agcaggtata gaataaccca aagaacttat ttttaaaata
     4201 aataaattaa aaaaatgatt tttaactatc ctagagctaa acatcaaaaa ataagctaaa
     4261 aaagtggtaa ttaaagcagt gattaaagct aagattatag tttgaaaact gataatataa
     4321 aattgcgatt caaaaagctt atgatctttt agcccccaat aaactagcca aataaaaggt
     4381 aaaataaaac ctacaaaagc aatcataaaa caataaatac aggatagaat ttgtttaata
     4441 ggatttaatt ttcttttttt gataaaaaga gctaaatttt gattaaaact ataatgatgt
     4501 ttatttttat aataataatc cacatacata atcaaaaata caaaaagcat taaaataccc
     4561 gataaaacac tagaagaata agaatcattc aaatcatacc agagtttaaa aattccagcc
     4621 gaaaaagtat ccactcccaa ataagcactt gcaccataat cactcaaagt ttccattaaa
     4681 accaataaag ctccagaaaa aatggcaggt cttgcactca aaagtgccac gcgtgtaaaa
     4741 attctaaatt cagaatattt catgatttta gctacttcat aagcctcttt agcttcactt
     4801 ttaaaagctg ttttagcaaa taaataaata taaggatata aagaaatagc caaaacaaaa
     4861 ataacaccat aatgattgaa aaaatctatc ctaaagccaa aattttcgtg aaaaaatcct
     4921 tgaaaatcca taattcccac ataaacaaag gctaaaatat aagcaggtat ggctaagggt
     4981 aaaatgagta atttttctaa aattttacag aaataaaaat cataatttgc aatcaaataa
     5041 gcagaactca cacccaaaat caagcttaaa cacaatactc ccatgctaat tataaaagta
     5101 tctttgatga attttaaaaa taaataatca aaaaaatgac tcaaattttc tttaatagat
     5161 gaaaattggg ttaaatcact tgtattaaaa ttttgaaata aaatataaaa aagttcagca
     5221 aaaataccaa aaataggtaa agcaagaaaa agggcaagta aaattgcccc gagtttatag
     5281 tattttaagg ttttatacat tatctaaaac cgacttcatc gtaaatttta accgcttctt
     5341 taatattttc tgctatctta ctcacaggga tttgatcttc tttgaaagtt ccaaaatctt
     5401 ttaccgtttg gcttaattct acatcatttc ttataggaaa ttcataatta ctatcagtaa
     5461 gaattttttg aatttcagga cttaacataa attccataaa ttttttagcc gcatcttgat
     5521 ttttacttga ttttgtcata gcaataccgc taatgttaat atgcgttcct ctattgtctt
     5581 gattaggaaa aataataccc aaagaattcc ccacttctac atcttttgga tttttagaat
     5641 tctttaaaag ccctatataa taagtattca taactgcaaa tttagcttcg cctgcaaata
     5701 cttgtctggc ttgatctcta tccccaccct ttggatttgt cgcaagattt tcaagcacac
     5761 ctttagccca tgctttagcc tctttatttc cgtcattagc tataatagat gctaaaagag
     5821 ttttgctata aggagctgta gcacttctca taacaatttc tcctttaaat tcagcttttg
     5881 ctaaatcttc ataatttttc attttgctaa tatcgatatt tgtgtttttg ttgtaagcaa
     5941 taattcttgc tctttttgta atcgcaaacc attctttatc cttatctctt aaatgagcgg
     6001 gtataaattc ttctaaatat tttgatgaaa caggggataa aagtcctaaa ttcttagctt
     6061 ctgtaagatt tgaaatatca gctgtgatga aaatatcagc aggagaatta cttccttcaa
     6121 gagaaagtct tttaataagt tctgaagctt tagcttgagt atgattgacc ttaatacctg
     6181 ttttttcttc gaattttttt atgatttcaa aatcagcatt ataatgtctt gctgagtaaa
     6241 tattaagctc actagcacct aaaaatgaaa cagctgttaa aaacataaag aagatttttt
     6301 tcatatttta tcctttaatt gagaattata ctcggtttta ttaagatctt taaaatcggt
     6361 atgagaatgt tcagagcaag caaaagcaaa gccaacgcat agtaaaaata aaattatttt
     6421 tttcatagac attaattc
//
LOCUS       DARBAR010000095         6418 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.095, whole genome shotgun sequence.
ACCESSION   DARBAR010000095 DARBAR010000000
VERSION     DARBAR010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6418)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6418)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6418
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.095"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..524)
                     /locus_tag="SB815_001410"
     CDS             complement(<1..524)
                     /locus_tag="SB815_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG0907128.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDIKAIVFIV
                     GGFGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLER
                     VNGILKNINLGHLSVNKDNFEQIIPLIEQKVNKMKQAGLVDESQKIELSCDFIPPNGD
                     YQNYGIMAAIDHINA"
     gene            603..1301
                     /gene="pseF"
                     /locus_tag="SB815_001411"
     CDS             603..1301
                     /gene="pseF"
                     /locus_tag="SB815_001411"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HEG0907129.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLISYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            1285..2109
                     /gene="pseG"
                     /locus_tag="SB815_001412"
     CDS             1285..2109
                     /gene="pseG"
                     /locus_tag="SB815_001412"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HEG0907130.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELSSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            2106..2579
                     /gene="pseH"
                     /locus_tag="SB815_001413"
     CDS             2106..2579
                     /gene="pseH"
                     /locus_tag="SB815_001413"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HEG0907131.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFEEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNRKALKLYQQNHFTIYDEDKNFYHICLKQSDCKALPS"
     gene            complement(2544..3290)
                     /gene="hisF"
                     /locus_tag="SB815_001414"
     CDS             complement(2544..3290)
                     /gene="hisF"
                     /locus_tag="SB815_001414"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEG0907132.1"
                     /translation="MLKTRIIPCVLLKNGQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGGQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGKAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVKALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(3291..3896)
                     /gene="hisH"
                     /locus_tag="SB815_001415"
     CDS             complement(3291..3896)
                     /gene="hisH"
                     /locus_tag="SB815_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEG0907133.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKEFGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQVPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFIRL"
     gene            complement(3893..5029)
                     /gene="pseA"
                     /locus_tag="SB815_001416"
     CDS             complement(3893..5029)
                     /gene="pseA"
                     /locus_tag="SB815_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HEG0907134.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
     gene            5285..6316
                     /gene="pseI"
                     /locus_tag="SB815_001417"
     CDS             5285..6316
                     /gene="pseI"
                     /locus_tag="SB815_001417"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HEG0907135.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALQSIKAAKEAGADAI
                     KIQTYTPDSMTLNSNKEDFIIKGGLWDKRKLYELYQSAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDLEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELF
                     KICEIFKEEKNPDLIFLKCTSAYPTAIEDMNLKGIASLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKSIESEDSKFSLDFDEFKAMVDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKDIKKGEMFSEENVKSVRPSFGLHPKFYQELLGKKATKDIEFG
                     DALKQGDFQ"
BASE COUNT         2307 a         1073 c          890 g         2148 t
ORIGIN      
        1 gcattgatat gatcaatagc tgccataatg ccatagtttt gataatctcc attgggtggg
       61 ataaaatcac aagaaagttc tattttttgg ctttcatcaa ccaaacctgc ttgtttcatt
      121 ttattaactt tttgctctat aagaggaata atttgttcaa aattatcttt attaaccgat
      181 aaatgtccta aattaatatt ttttaaaatg ccatttacac gctctaaatc atcttgattg
      241 ggaataagct ttggattata cttttgatca atactttgtc ttgcacaaaa acaatgataa
      301 aaaacatgta ccactacaac atcaaaattt ttagcaatat attccctatc aaaatctaaa
      361 aaagaaatat ttgcattagc tccaaaacca cccactataa aaactatggc tttgatatct
      421 ttttcatcat cataacttat gcgatattca agcttactgg ttcttttaat acctagttct
      481 acatcatcac aagaatcaat ttcaaaggtt tggtttataa gcaattttaa gccttttatt
      541 gtattttaaa gacaattata cttaaatttt agtaaaataa aacacaaaaa caaggcttaa
      601 ctatgaaaaa tctttgcata atccctgctc gtggtggatc aaaaagaatt cctagaaaaa
      661 atatcattga ttttctaggt aaacctttaa tctcttatag catagaaaat gctttaaatt
      721 caggtatttt tgatgaagtg gtgctttcaa gcgatgatga agaaatcata gaagtagcct
      781 taaaatacgg tgcaaaagct ccttttgtgc gtgataaaaa tttaagcgat gattatgctt
      841 caagcactgc tgtagtgcaa aatgccatag aaattttaca aagccaaaat caaatttatg
      901 atcatgtctg ctgcctttat gctactgctc ctttgttaaa taaagacatt ttaaaacaag
      961 cctatgaaaa atttatacaa aatcaaagca agtttttatt tgctgctact gagtttgagt
     1021 atcctataca aagggcattt tatctaaatg aaaacaatca agtttatatg tttgatgaaa
     1081 aacattataa aagtcgttca caagatctaa caaaagctta tcatgatgca ggagcttttt
     1141 attttggtac aagcaaagct tggcttgagg aagattttat atttaaacct cattctagcg
     1201 tgtttgtatt gccaagaaat ttagtttgcg atatagacac catacaagat ttggaatttg
     1261 caaaaatact ttataaggta aatcatgaaa gtgcttttta gaagcgatag ctccagtcaa
     1321 ataggctttg gacacattaa acgcgatcta gtcttagcta aacaatatag cgatgtaagt
     1381 tttgcttgct tgcctttaga aggctccttg atcgatgaaa ttccttatcc tgtttatgag
     1441 cttagtagcg aaagtatcta cgagcttatc aatctcatca aagaagaaaa atttgaactt
     1501 cttatcattg atcactatgg catcagcgta gatgatgaaa aactgatcaa gcttgaaaca
     1561 ggggtgaaaa ttctaagctt tgatgatgaa ataaagcctc atcattgtga tattttactc
     1621 aatgtcaatg cctatgcaaa agcaagtgat tatgaaggtt tagtgccttt taaatgcgaa
     1681 gtaagatgtg gtttttctta tgctttaatc agggaagaat tttatcaaga ggccaaagaa
     1741 aatagagaaa aaaaatatga ttttttcatt tgcatgggtg gaactgatat aaaaaacctt
     1801 tctttacaaa ttgctagcga attacctaaa acaaaaatca tcagcattgc aaccagctct
     1861 tctaatccta atcttaaaaa attgcaaaaa tttgcaaaat tacataacaa tattagatta
     1921 tttatcgatc atgaaaatat tgcaaaattg atgaatgaaa gcaataaact catcattagt
     1981 gcaagttctt tagtcaatga agccttgctt ttaaaggcaa atttcaaagc tatttgttat
     2041 gttaaaaatc aagaatctac agcaacttgg cttgctaaaa aagggtatga agtggagtat
     2101 aagtattgat aaaacttaaa aatttcacag aacttaattc tcaagaaata gagctgattt
     2161 ttaaatggcg caatcacccc gatatcaatc aatttatgaa aacaaaatat attgattttg
     2221 aagaacattt aagattttta aaaaaattac atcaagattc tagcaaaaaa tattttttag
     2281 tttttcaaga tgaacagatt atcggcgtaa ttgattttgt caatatcaca actaaatctt
     2341 gcgaatttgg actttacgca aaacctaatt taaaaggcgt aggacaaatt ttaatgaatg
     2401 aaattataaa atacgctttt gaaaacttaa aagtaaatac tcttaaagct tatgttttca
     2461 aagacaatcg caaagcttta aaattatatc aacaaaatca ttttactatt tatgatgaag
     2521 ataaaaattt ttaccatatt tgcctaaagc aatctgactg caaagccttg cctagctaat
     2581 tcttctttta catctttagg ggtatactta gaaaaatgaa aaatataagc acccgctaaa
     2641 gcatcagcac ccaaatttaa agccttaact ccatcacttg gattgctaag tcctccattg
     2701 ataataagag gaattttaag tttattttga aagatcttta aaagttctaa atcataaccc
     2761 tttgcttttc cttcaaaatc cacagaggtt aaaagaagct ctccagctcc ttttttttca
     2821 tattctaaag caagttctaa aggacttttt tcaagtaaat ttcccctgtc ataaacacaa
     2881 aattgccctc cttttctttt aacatctata gaacaaacta tacattgaga accaaaacga
     2941 ttagccgctt tacttataaa atccatatct tctaaggcct tagaattgat agaaatttta
     3001 tccgcaccta aatttaaaat cttttgtata tcttcaaggg tttttatccc gccacctata
     3061 gttaaaggca taaaacattc tttagcaaga tcttctatac tttcaaaatc tatttctcca
     3121 ctttttgaag catctatatc taagataata agctcatcaa cattgcgtgc attataaatt
     3181 ctcattgttg aagttaaatg ccctatagtg cgaaaatctt taaattctat acttttaaca
     3241 agttgtccgt tttttaacaa aacacaaggg ataattctag tttttaacat ttaaagcctt
     3301 ataaaatttt ctaaaagttt taagcctaaa ttttgacttt tttcggggtg aaattgtgta
     3361 gcaaaaatat gatctttttg taaagatgca acaaatttat gtccgtattg tgctttagca
     3421 cttacaaact catctttgca tttcacataa aaagaatgca caaaataaaa atcactctta
     3481 ttatctatgc cttgatacaa aggaacttgt tttaaaattt caagctcatt ccaacccatg
     3541 tgtgggattt ttaaatttaa atcctcttca aatttgacta cttcaccttc tataaaacca
     3601 agtccttcgc aaactccacc ttcatagccc ctttctaaaa aaagctgcat tcccaaacaa
     3661 atgcctaaaa taggtttttt ttgtactaaa acttgctctt ttaaagcttc tataaaacca
     3721 aattctttta aatttttcat ggcttcttta aaagatccca ctccaggtaa aagcaattta
     3781 tctgcttttt gcaaatcttt tggattttta gctatgaaat ttatagctcc tattttttca
     3841 aaagccttag caacagagtt taaatttccc gccttgtaat caatgagcgc tatcatttta
     3901 aaacacactc gtcttttctt accaaagaac catcataatc tcttataaat ttaccatttt
     3961 catcacgttt aaaaattttt ttattggtaa aagaatctac tattttttga aattcttcct
     4021 cgctaaaacc actgaattca aggtattttt taatagcctt tttagggggc ttgccatcgt
     4081 atttttgtac caaacgcacc ccttcttcac ggctgatata acctaaacga atatccaaac
     4141 aagcattatc cgttgctcta ccaaagccgt atttgcagta ttttaaataa tcatgcacat
     4201 gattagaata acaatctaaa ttttcaaaat tttcataagt agtctcaaca ggatgatcta
     4261 gagttaaaaa accatatttt ttagaaattt caagaatttt tttataatcc catttaaaat
     4321 aataccctaa aaatagccca gtaaccccta ctctttgaag ttcttcatca cttggataag
     4381 tatataaaaa caaatctttt tcagtgatac catttacccc aagcatatca gaagcacgat
     4441 ttcctaaaag cccgccaaat tcttcaagcc actctctgcc taaaatattt ttatttttac
     4501 tactcgcagg accgccatac tctatctgcg gactttctcc ccagatgatc aaaggcactc
     4561 caaaatttac cgctatgcgt ggaacagaag taaaaattcc caaatggttt tgccactcat
     4621 tatcccctgt tcttataaaa gcttcacggg caagtttttg ataaactttt ggatcacgct
     4681 tgatatggat caaatccacg ccaagatgat ttaaattgtc taaatttttg cgccctattt
     4741 tcgtaggtac gctaggctca aaacacacac acaaaggatt aagtccaagt tcaagcattt
     4801 taaccacttg aaaagtagaa tcttttccgc cacttactcc gataacacaa tcataaacag
     4861 gatgtttttt gtattttttt ataagctcaa aaaattcttt ttctctttct tgccaattaa
     4921 tattttgatt tttagcttct tgagaacgac aagcatcaca aacaccttct tcatcaaaat
     4981 gtaaatcagg cttagtatct ggcatcacac attttttaca aaatttcata aatttccttt
     5041 aattagtctt aaatatatat cgttataatt aaattttatt ttatgatttt atatatttat
     5101 attatataaa aattaaaaaa tgaatgaatt ctataattta aatccatatg gcattttttg
     5161 aatgaaacca agcaaaatca taacaaagtt gtaatattta tataatataa atatataaat
     5221 tgaagaaata tataatataa ttatatatca ttttagtcag gaaatttacc aaagaaagaa
     5281 aagtatgcaa ataggaaatt ttaacaccga taaaaaggtt tttatcatag cagaacttag
     5341 tgcaaatcac gcaggaagtc ttgagatggc acttcaaagt ataaaagctg ccaaagaagc
     5401 aggtgctgat gcgataaaaa ttcaaactta cactccagat agcatgactc taaatagcaa
     5461 caaagaagat tttattatta agggtgggct ttgggataaa agaaaacttt atgagcttta
     5521 tcaaagtgca aaaacccctt atgaatggca ttctcaaatc tttgaaaccg cacaaaatga
     5581 aggcatactt tgtttttcaa gtccttttgc caaagaagat ttagaatttc taaaacgctt
     5641 tgatcctata gcctataaaa tcgcttcttt tgaagctaat gatgaaaatt tcgtgcgttt
     5701 aatcgccaaa gaaaaaaaac ctactatcgt ttcaacgggc attgctacag aagaagaact
     5761 ttttaaaatc tgtgaaattt ttaaagaaga aaaaaatcct gatttaatct ttttaaaatg
     5821 cacttcggct tatcctactg ccatagaaga tatgaattta aaaggcatag caagtttaaa
     5881 agaaaaattt aatgttgaag tggggctaag tgatcatagc tttggttttt tagcccctgt
     5941 tatggcagta gcacttggag ctagagtgat agaaaagcat tttatgttag ataaaagcat
     6001 agaaagtgaa gacagtaaat ttagtcttga ttttgatgaa tttaaagcta tggtagatgc
     6061 agtaagacaa gctgaaagtg ctttaggcga tggtaagtta gatctagatg aaaaggcgct
     6121 taaaaaccgt gtttttgcaa gaagcttata tgcaagtaag gatatcaaaa aaggtgaaat
     6181 gttcagcgaa gaaaatgtaa aatccgtgcg tccttctttt ggactacatc ctaaatttta
     6241 tcaagaactt ttaggaaaaa aagctactaa agatatagaa tttggtgatg ctttaaaaca
     6301 aggagatttc caatgacctt cacccctacc caaaaagaac tctttaacaa aaacattgag
     6361 gctttaaaca atattctttt aaaagaaagt ttaaaagaaa tcaagtctag taaatttg
//
LOCUS       DARBAR010000096         6397 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.096, whole genome shotgun sequence.
ACCESSION   DARBAR010000096 DARBAR010000000
VERSION     DARBAR010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6397)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6397)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6397
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.096"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            116..388
                     /locus_tag="SB815_001418"
     CDS             116..388
                     /locus_tag="SB815_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEG0907136.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            375..926
                     /locus_tag="SB815_001419"
     CDS             375..926
                     /locus_tag="SB815_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG0907137.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLMGFKSEIKT"
     gene            910..2193
                     /locus_tag="SB815_001420"
     CDS             910..2193
                     /locus_tag="SB815_001420"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEG0907138.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISTIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            2197..2508
                     /locus_tag="SB815_001421"
     CDS             2197..2508
                     /locus_tag="SB815_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEG0907139.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            2505..3599
                     /locus_tag="SB815_001422"
     CDS             2505..3599
                     /locus_tag="SB815_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEG0907140.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNAKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNA
                     SLVVTKIDPKSKVSNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            3596..4441
                     /locus_tag="SB815_001423"
     CDS             3596..4441
                     /locus_tag="SB815_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEG0907141.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            4452..6350
                     /gene="tkt"
                     /locus_tag="SB815_001424"
     CDS             4452..6350
                     /gene="tkt"
                     /locus_tag="SB815_001424"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEG0907142.1"
                     /translation="MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFVLSRQKLKALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFERFGFSVSK
                     LVNFILSK"
BASE COUNT         2357 a          948 c         1118 g         1974 t
ORIGIN      
        1 atttagcata caaaataatg acgaaccttt ttaatttatt taaatttcaa gccttaattt
       61 accttttttt aaacacaatc acgctaaagt atataaaaat ttttaaggat aaattatgat
      121 gccttttagt gatgaagagc ttataaatcc tgttaaagca agtttagaaa agagcttgcc
      181 tatgcttgaa cgtgatggcg gagggcttga atttttagga attaaaaatg ggatcgttta
      241 tgtccattta ataggagctt gtaaaggctg tgcatcgagt ggaacaacgc taaaatacgg
      301 tcttgaaagg caacttaaga ttgatattca tccggaaatc actataatca atttaaacgg
      361 cggagcagac gaatttgcaa aattataaaa aacttggaat tgaacatttt tacaagaaag
      421 attttaaaac tgcaaaaatg tatttttcta tggcttatga aaaacgcaaa aataaacgct
      481 tgctaaattt tatctgcctt tgtgatcttg ctttaaaatc tcctaaagaa gcttctttac
      541 tttttgattt ttatatagaa cattacaaaa tctctagcat tgataaagac ttagaagaaa
      601 ttttaagtac aattgaattt aaaaaacaag aaaacaaaca ggaaaacgaa tttgaagatg
      661 ggcatgcgtt aaattatcaa gattttttaa aaagcgaaga agaacttggc tttcaaaaaa
      721 gttttgaaaa tatcattaac agcactaaat tagttattga taatcgtgat gattttttag
      781 attttttgga aaaattactt gataatggct ataaagatat gactttaaat tacatagaaa
      841 atgttatgcc tcatttttgg gcaaatgata gatttatcaa actccaagaa aaactcatgg
      901 gatttaaaag tgaaattaaa acttgaaaat tcattcatta cagataacac cttagagtgt
      961 gaaaaagaat gctttttttt gcaaaccaca caaaatgcta aatttcacgc tcaagcctta
     1021 gaaaaaggtg caaaaatcat tgatgtaaat gagtgtaaaa aacttttaaa aatcgatgaa
     1081 aagattcaaa tcataggaat cacaggaacc aatggcaaaa ccacaaccgc agcagcgatt
     1141 tattctatct tattggattt aggttataag tgtgggcttt gtgggacaag aggagctttt
     1201 atcaacgatg aacaaatcga tgaaaaatcc ttaaccacct cccctattct taaaacctta
     1261 gaatacctac aaatagccac tcaaaaaaaa tgtgattttt tcatcatgga agtaagctca
     1321 cacgcactcg ttcaaaaccg catcgaaggc ttaaattttg ctgctaaaat ttttaccaat
     1381 atcactcaag atcatttaga ttttcacggt acttttgaaa attataaaga agcaaaagaa
     1441 ctttttttta ccgatgagag tttaaaattt atcaacaaag atgctttggc tattaaattt
     1501 aatgtgcgta atgcttttac ttatggcata gaaaatcctg ctttatatca aatcaaagct
     1561 tattctttag aagaaggcat tagtactatt gtaacaaata aaaatcaaac ttttcacata
     1621 gactcgccct tgctaggact ttttaatctt tacaatcttc tagttgctag tgcttgtgtg
     1681 aatgaactcg taaagcctga tttaaaagac ttggaaaaag ctatcagtgg atttggcggg
     1741 gtttgtggca gggtagaaca agtagcaaaa ggtgtgattg tagattttgc tcatacgcct
     1801 gatggcattg aaaaagtgct tgacactctt aaaaataaaa aactcatcgt tgtttttgga
     1861 gcaggtggag atagagataa aaccaaacgc cctttaatgg gaaaaatcgt cgaacatttt
     1921 gcaaaaattg ctatcattac aagtgacaat ccacgcagcg aagaaccaaa aaccatcatg
     1981 gaagaaattt tatcaggctt tactaaaaaa gaaaaagttt taatgataga agatagaaaa
     2041 gaagctataa aaaaagcttt agaactaaaa gaaaatgacg atttagtcgt tattttaggc
     2101 aaaggtgatg aaactactca agaaattaaa gggataaaat atccttttag tgataaagta
     2161 gttgttaatg aaattttaaa aaatcaagga taatcaatgt ttgaaaatat ggatttttct
     2221 aaaatgggag aacttttaaa tcaagttcaa gaaaaagcaa aaaatataga actagaactt
     2281 gcaaatcgtg aatttagtgc caaaagcgga gcaggacttg ttaaagtaag tgccaatgga
     2341 aagggtgaaa ttatcgatgt tagcattgat gattctttac ttgaagataa agaatccttg
     2401 caaattttac ttatttctgc aattaatgat gttttggcta tggttgcaca aaatcgttca
     2461 agtatggcga atgatgtttt aggcggtttt ggaggtatga aattatgaaa aaaattttaa
     2521 ttatttgcat gctttttact ttgtcttttg gtatagaaag acctaaattt gaagattttt
     2581 tagcaggtta tgaaagaaat aaggcaagca tgctcaacta tgaaggaatg ccagcttttg
     2641 cactcagtga aaatttactt gctgtgttaa aacagcctaa tgctaagctt aacaaatatg
     2701 taaaatacga tccattttta aatttatatc ttgtaagaac tgactttagc ctaatcccta
     2761 ctcctatggg tgatgaagaa aaacttactc gtaatgattg ggttggaatt tgggatccta
     2821 ataaacctta tatagggcat attaagtatt tagctcaaaa tattgatgaa aaagatcaac
     2881 ttgattttaa ttctaaaata ggacttttag ggactccatg ctgtgaaatg atggggattg
     2941 ctttaaataa tagctctttt ataggcaatc gctatttaaa acattttatg aaatataacg
     3001 atgtttattg gggggatatt ggcgttgatt ttgttgttcg agaaaataaa atttatgtta
     3061 acaatgtaag aaaaaatcca caatttttaa tcaatgatca agttataagt gttgatggct
     3121 tacccgccaa tgatttaaga aaactcaatg aaaaaattct ttttgcagat cgcggaagca
     3181 ctctttattt tcaagtgttg cgtgataata tggatttaaa tatttctact gaagtttttg
     3241 caaaagattt gagcaaattt aaccttcctg attctaaacc aaaaccaaaa attacaaatt
     3301 tcacaagcaa tcttggttta acggttaatg ctagtcttgt tgtaactaaa atagatccaa
     3361 aatcaaaagt atcaaatgca ggatttatgg taggagataa aattttacgc gttaataata
     3421 ttattttaaa taattttaaa gaattacaaa atattttaag tgctggtaat gactttagca
     3481 tcttaattga acgcaaaagt actaaattac ctttatcaaa tttcaacaat gaactaggcg
     3541 gaaatgccaa ctcaggtggc gatggtaaat ttcaattttt cataaggctt actaagtgaa
     3601 tttaaaagaa ctttttatcc atcacttaga aaaaaatcta cccaaagttg aaagctttca
     3661 tccttttttc aatgaagctt tagcacttat gttaaaagca ggaggaaagc attttcgcgc
     3721 acaattgctt ttaagcgtag tgcaaagcaa taaacctgaa cttttaaatc aagctttaga
     3781 tgtagcttta gctttggaat ttatccatac ttattcactc atacacgatg atttacccgc
     3841 tatggataat gcggacttta gacgaggaat tccaacctta cacaaaagct acgatgaaac
     3901 tacagccatc ttagtaggtg atgctttaaa taccgaagct tttttagttc taagtcatgc
     3961 tcatttaaaa gatgaaatca aaatcaaact catcaaaacc cttgccttta atgcaggact
     4021 taatggaatg gtcataggac aagctattga ttgttttttt gaagacaaaa gactgagttt
     4081 aaatgaactt gagtttttgc atacacataa aaccgcaaga ttgatcgccg cagctttaaa
     4141 aatgggttgt gaaatttgcg aacttaacaa cgaagaaagc aatcaaattt acaaacttgg
     4201 tttaaaacta ggactgattt ttcaaatcaa tgatgatatt atcgatgtaa ctacaagtca
     4261 agaacaaagc ggaaagccta ccaacaacga tattcataaa aattcttttg tcaatttgct
     4321 tggacttgaa caagccataa aaacaaaaga aaatcttctt agtgaatgcg aacaagactt
     4381 agaaaaactt aatgaaaaac tcgcacaaat gatacaaaat ttaataattc aatacttata
     4441 aaggcaaaat aatgaacatt caaattttac aagaacaggc aaatactcta agatttttaa
     4501 gtgctgatat ggtgcaaaaa gcaaactcag gacacccagg tgcacctttg ggcttagcag
     4561 atattttaag tgttttaagt tatcatttaa aacacaatcc caaaaatcca acttggctaa
     4621 accgagatag acttgtattt tcaggcggac atgcaagtgc tttgctttat agttttttac
     4681 atttaagcgg ctatgactta agcttagaag atcttaaaaa tttccgccaa cttcattcta
     4741 aaacccctgg acaccctgaa atttcaactc ttggagtaga aatcgctaca ggccctttag
     4801 gacaaggcgt tgccaatgct gtaggctttg ctatggcagc aaaaaaagca caaaatttgc
     4861 taggcagtga tttaatcgat cataaaattt attgtctttg cggagatggg gatttacaag
     4921 aaggcatttc ttatgaagct tgttctttag caggacttca caaacttgat aacttcatac
     4981 ttatttatga tagcaacaat atctctatag aaggcgatgt aggtttagcc tttaacgaaa
     5041 atgtaaaaat gcgttttgaa gcacaaggat ttgaagtttt aagtataaat ggacacgatt
     5101 atgaagaaat caataaagcc ttagaacaag ctaaaaaatc cacaaaacct tgtcttatca
     5161 tcgcaaaaac aactatagca aagggtgcag gagagcttga aggcagtcat aaaagccatg
     5221 gcgcaccttt gggtgaagaa gtgattaaaa aagccaaaga acaagcaggc tttgatccaa
     5281 atatcagttt tcatatccca caagcaagca aaatccgctt tgaaagtgct gtagaacttg
     5341 gggatttaga agaagcaaaa tggaaagata agcttgaaaa aagtgctaaa aaagaacttt
     5401 tagaaaggct attaaatcct gattttaaca agatagctta tcctgatttt aaaggaaaag
     5461 atcttgctac aagagatagt aatggtgaaa ttttaaatgt tttagctaaa aatttagaag
     5521 gatttttagg tggaagtgca gacttaggcc cttcgaataa aacagaactt cacagtatgg
     5581 gagactttgt agaaggtaaa aatatccatt ttggtatcag agaacacgct atggcagcga
     5641 ttaacaatgc ttttgcaaga tatggaattt tcttaccatt ttcggcaact tttttcatct
     5701 ttagcgagta cttaaaacct gccgcaagaa tagcagctct aatgaaaatc aaacattttt
     5761 tcattttcac acacgatagc ataggcgtgg gcgaagatgg accaacacac caacctatag
     5821 aacaacttag cacttttaga gctatgccaa attttttaac ctttagacct gctgatgggg
     5881 tggaaaatgt caaagcttgg caaatagccc taaatgctga tattccgagt gcttttgtgc
     5941 tttcacgcca aaaactcaaa gctctaaatg aacctgtttt tggagatgta aaaaacggag
     6001 cgtatttact caaagaaagc aaagaggcta aatttacact tctagcaagt ggaagtgaag
     6061 tttggctttg tctagaaagt gcaaacgaac ttgaaaaaca aggttttgct tgtaatgttg
     6121 tttccatgcc ttgttttgaa ctttttgaaa aacaagataa agcttatcaa gaaagattgt
     6181 taaaaggtga agttataggt gttgaagcag cacattctaa tgaactttat aaattttgcc
     6241 ataaagtata tggcatagaa agttttggag aaagtggtaa agacaaagat gtgtttgaac
     6301 gctttggatt tagcgtttca aagcttgtaa attttatcct tagcaaataa aatgaataca
     6361 aatttcaaat ttcaaaataa tactcttttt atctttg
//
LOCUS       DARBAR010000097         6261 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.097, whole genome shotgun sequence.
ACCESSION   DARBAR010000097 DARBAR010000000
VERSION     DARBAR010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6261
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.097"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            35..394
                     /locus_tag="SB815_001425"
     CDS             35..394
                     /locus_tag="SB815_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEG0907143.1"
                     /translation="MDIIFANQSLYYIPLKELKQNILEFYELLNTGGILFATMMSKKN
                     YYFSHSQKEEKNGLSKVEINGRLNETSFIHFIDKAQDLENLFQPFETLFLGDYDPINF
                     YNFEGSAHHYIYIGIKK"
     gene            434..1438
                     /gene="legI"
                     /locus_tag="SB815_001426"
     CDS             434..1438
                     /gene="legI"
                     /locus_tag="SB815_001426"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HEG0907144.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEIAADSGADFVKFQSFKAK
                     NCISTKAKKAPYQLKTTASDESQLQMVQKLELDIKAHKELILHAKKCNIAFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLNKKIILSTGMANLGEIEEALNVLCK
                     NGAKRQNITLLHCTTEYPAPFDEVNLKAMQSLKDAFKLDVGYSDHTQGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPHELKTLCTQIRQIQKAMGDGIKKASKSEQKNI
                     NIVRKSLVAKKDIQKGEIFSEENLTTKRPANGISAMRYEEFLGKIATKNYKEDELIRE
                     "
     gene            1431..2585
                     /gene="legG"
                     /locus_tag="SB815_001427"
     CDS             1431..2585
                     /gene="legG"
                     /locus_tag="SB815_001427"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEG0907145.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCHEIQNDKDLSLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSDAFEDLKPDMVVIL
                     GDRYEMLSVASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNIGSLASTIIKNMNFLNKKDLEKALEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQNYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGDRQKGRLRTQNIIDCEINDLDQA
                     FEKLESKEFKQNLKNFKNPYDNDKNPNKFIKTCLKNANLDTILHKNFIDL"
     gene            2594..3619
                     /locus_tag="SB815_001428"
     CDS             2594..3619
                     /locus_tag="SB815_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEG0907146.1"
                     /translation="MDINKLKLTPDSSIEEALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALISGKTLKDSIKDIYTKNPITIKENTSKEQLLKISAKTDIYDFPVLDEKGQI
                     LSIKSVSSLLKTNPNSIVIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIIQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFIV
                     MNADILTELNFNDLLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLALQKGKVNTYIINDYWIDIGRPDEFL
                     KANEDFK"
     gene            3616..4521
                     /gene="ptmF"
                     /locus_tag="SB815_001429"
     CDS             3616..4521
                     /gene="ptmF"
                     /locus_tag="SB815_001429"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HEG0907147.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLKYEVSLLSLSAKKEEFEKTQIY
                     RSLKECHLNEFDLFIIANITTEHFNTLKALNELVKDKIILVEKPLFEKSQNFTSSKNH
                     IYVAYLLRFHPVIVALKRLLKGEKIYFASLVCNSYLPHWRALDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFGNLELIYSQNAKISELDITSDDFAFLALKNSQKAKIHIELDYF
                     AKFNKREIIIHTLEKSFKADLINNKIEIYHKNQSQKILNFENDTIKTLQNLHQAVFEK
                     DKELCDLKQALKVLELCDEVRKKNG"
     gene            4514..5221
                     /gene="legF"
                     /locus_tag="SB815_001430"
                     /gene_synonym="ptmB"
     CDS             4514..5221
                     /gene="legF"
                     /locus_tag="SB815_001430"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HEG0907148.1"
                     /translation="MAEILCTICARGRSKGVKNKNIKKINELEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYDAEVFFKREAHLANDRAAKLPVMRDALLRSEEHFKTRFE
                     TLIDLDASAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGKNTGLFVMDESTAFDVDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            5221..5991
                     /gene="ptmA"
                     /locus_tag="SB815_001431"
     CDS             5221..5991
                     /gene="ptmA"
                     /locus_tag="SB815_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HEG0907149.1"
                     /translation="MLENKIIFVAGACGRIGKVLCKKILLNKGTVILADINKERLNKL
                     QENLETNFKTKLLSLELDITKQESLQIALQKSQERYGKIDAFVNSSYPFGKDWGKTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGHGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDVCGTLVFLLSDESRFITGQTLVVDDGWGL"
     gene            5991..>6261
                     /locus_tag="SB815_001432"
     CDS             5991..>6261
                     /locus_tag="SB815_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907150.1"
                     /translation="MTFTPTQKELFNKNIEALSNILLKESLKEIKSSKFELVLGKDNL
                     DINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNG"
BASE COUNT         2439 a          942 c          997 g         1883 t
ORIGIN      
        1 aaattctagt atcaaaggac tttttgatga aaatatggat atcatctttg caaatcaaag
       61 tctttactat atacccttaa aagaactcaa acaaaatatt ttagaatttt acgaactttt
      121 aaacacgggt ggaatacttt ttgctacaat gatgagcaag aaaaattatt atttttccca
      181 cagtcaaaaa gaagaaaaaa atggcttgag taaagttgaa attaatggaa gattaaatga
      241 aacaagcttt atacatttta ttgataaagc ccaagatcta gaaaatcttt ttcaaccttt
      301 tgaaacttta tttttaggag attatgatcc tattaatttt tataattttg aaggatcagc
      361 acaccattat atttatatag gtattaaaaa ataaaatttt gcctttattt taaggcaaaa
      421 taaaggcaaa actatgaaaa aaactcttat catcgcagaa gcaggagtta atcacaatgg
      481 tgatttaaat ttagctaaaa agttaataga aatcgcagca gattcaggcg ctgattttgt
      541 taaatttcaa agttttaaag ccaaaaactg tatcagcaca aaggctaaaa aagcacccta
      601 tcagcttaaa accacagcta gtgatgagag tcagcttcaa atggtacaaa aactcgaact
      661 cgatattaaa gctcataaag agcttatctt acacgcaaaa aaatgcaata ttgcctttct
      721 ttctactcct tttgatcttg aaagtgtaga tcttttaaat gagttaggct taaaaatctt
      781 taaaattcca agcggagaaa tcaccaatct accctatctt aaaaaaattg caaagcttaa
      841 taaaaaaatc atactttcaa caggcatggc aaatttaggc gagatagaag aagctttaaa
      901 tgtgctttgc aaaaatggcg ctaaacgcca aaatatcact cttttacact gcactacaga
      961 ataccctgcc ccttttgatg aagtcaatct taaagccatg caaagcttaa aagatgcttt
     1021 taaacttgat gtgggttatt ctgatcacac tcaaggcata cacatttccc tagctgcggt
     1081 tgccttagga gcttgtgtga tagaaaagca ttttacccta gataaaaata tgtcaggacc
     1141 tgatcataaa gcaagtctag aacctcatga actaaaaacg ctttgcactc aaattagaca
     1201 aatacaaaag gctatgggtg atggcataaa aaaagcaagc aaaagcgaac aaaaaaatat
     1261 caacatagta agaaaaagtt tagtggctaa aaaagacatc caaaaaggag aaatttttag
     1321 cgaagaaaat cttactacca aacgccccgc aaatggtata agtgctatga gatatgaaga
     1381 gtttttaggt aaaattgcta ctaaaaacta caaagaagat gagcttatcc gtgagtaaaa
     1441 gaaaaatttg tatagtcagt gcaacaaggg ctgaatggta tcttttaaga aatttatgtc
     1501 atgaaattca aaacgataaa gatctaagcc ttcaaatcat cgctacagga gcacatttaa
     1561 gccctgagtt tggactcact tataaagaaa tagaaaaaga atttaaaatc actaagaaaa
     1621 ttcctatcct acttgcaaat gatgataaaa taagcctttg caaaagcatg agtttagctt
     1681 ttagtgcttt tagcgatgct tttgaagact taaaacctga tatggtggta attttaggcg
     1741 atcgttatga aatgcttagc gtagcaagtg tatgtctttt gatgcacata cctttagtgc
     1801 atttatgtgg cggggagctt actttagggg ctattgatga tagtataaga cacagcattt
     1861 caaaaatgtc acatttacat tttgtaagtc atgaaattta taaaaaaagg cttttgcaac
     1921 ttggagaaga agaaaaaagg gtttttaata taggttcttt agcttctact atcataaaaa
     1981 atatgaattt tttaaacaaa aaagatttag aaaaagcctt agaaatgaaa ctagataaag
     2041 aactttactt aatcacttat catcctttaa ccttaaatgt aaaaaatact caaaaagaga
     2101 ttaaaacctt acttaaaaaa cttgacaccc ttaaaaacgc aagtttgatt tttaccaaag
     2161 caaatgccga tgaaaatgga cttttaatca atgaaatttt gcaaaattac tgccaaaaaa
     2221 actcacacaa ggctaaactt tttgataatc ttggctcaca aaaataccta agtcttatga
     2281 aaatagccaa ggccatgata ggcaattctt caagcggtat tagtgaaagt ccttttttta
     2341 aaactccttg cattaatata ggcgatagac aaaaagggcg tttaagaact caaaatatca
     2401 ttgattgcga aatcaacgat cttgatcaag cttttgaaaa attagaaagc aaagaattta
     2461 aacaaaattt aaaaaatttt aaaaaccctt atgataatga taaaaatccc aataaattca
     2521 taaaaacttg cctaaaaaat gcaaatttag atacaatttt acataaaaat ttcatcgatt
     2581 tataaggctt agcgtggata taaacaaact caaactcacc cctgattcaa gcatagaaga
     2641 agctttaaaa atagtcgggc aagaacgcgt tagactaggc attatagttg ataaaaagga
     2701 taaattttta ggagtcatta gtgattcaaa catcagaaaa gctttaatta gtggcaaaac
     2761 tttaaaagat agtatcaagg atatttacac taaaaatccc atcaccataa aagaaaacac
     2821 aagcaaagaa cagcttttaa aaatttctgc taaaaccgat atttatgatt ttcctgtttt
     2881 agatgaaaaa gggcaaattc tttccataaa atctgtctca tcgcttttaa aaaccaatcc
     2941 aaactccatt gtcatcatgg ctggaggctt aggatctcgc ttaaaagagc tgactaaaga
     3001 tactccaaaa cctatgttaa aagtaggcaa aaaacccatt ttagaaagca taatccaaag
     3061 acttaaaaat caaaattttg aaaattttat cttttgtgtg aattataaaa aacaaatcat
     3121 agaagattat tttcaaaaag ggcaaaaatt tggggttaaa atttcttata ttaaagagcg
     3181 taaaaaacta ggtacagcag gggctttaag ccttataaaa caagaattta aagaaagttt
     3241 tatcgttatg aatgcagata ttttaaccga gcttaatttt aatgatcttt taaaagcgca
     3301 taaaaaatca aaagctttaa tgagcgtttg cgtgcgtgag tttgagcaac aaattcctta
     3361 tggagtgatc actcaaaaac aaggttttat agaaaatata gaagaaaaac ctacccaaaa
     3421 attcctagta agtgcgggga tttatgtact tgaaaatgaa attttaaatt taattgctaa
     3481 aaatgaatac ctagatatgc cagaactcat caaactcgct ctacaaaaag gtaaggtaaa
     3541 tacctatatc atcaatgatt attggattga cattggaagg ccagatgagt ttttaaaagc
     3601 caatgaggat tttaaatgaa agtcttaatc ataggctttg gaagcatagg aaaaaagcat
     3661 tttttagcct taaaaaattt aaagtatgaa gtaagtttgc tttctttaag tgctaaaaaa
     3721 gaagagtttg aaaaaactca aatctatcgt tccttaaaag aatgtcattt aaatgaattt
     3781 gatcttttta tcatcgcaaa tatcaccaca gagcatttta acaccttaaa agctttaaat
     3841 gagcttgtaa aagataaaat catactcgta gaaaaacctt tatttgaaaa aagccaaaat
     3901 ttcacaagct caaaaaatca catttatgta gcatatttac tgcgttttca tcctgtgatt
     3961 gtagctttaa aaaggctttt aaaaggtgaa aaaatttatt ttgctagttt ggtttgtaat
     4021 tcttatttgc cccattggag ggctttagac tacaggcaaa attacagcgc taaaaaagag
     4081 ctaggtggtg gggttttact cgatctctct catgaaatcg atctagcctt ttttcttttt
     4141 ggaaacttag agcttatata ctcccaaaat gctaaaattt cagagcttga cataacaagc
     4201 gatgattttg cctttttggc tttaaaaaat tcacaaaaag ctaaaattca tatagaacta
     4261 gactattttg ctaaatttaa caaaagagaa attatcatcc atactttaga aaaaagcttt
     4321 aaagccgatt taataaacaa taaaatcgaa atttatcaca aaaatcaaag tcaaaaaatc
     4381 ttaaattttg aaaatgatac gataaaaacc cttcaaaatt tacatcaagc agtctttgaa
     4441 aaagacaaag aactttgcga tcttaagcaa gctttaaaag tacttgaact ttgtgatgaa
     4501 gtaaggaaaa aaaatggctg aaattttatg taccatttgt gctagaggta gaagcaaagg
     4561 cgttaaaaac aaaaatatta aaaagattaa cgaacttgaa atgatagctt atagcatcat
     4621 acaagctcaa aattcaaagc tttttaaaca catagtcata agtactgata gtgatgaaat
     4681 cgcaagtgta gcccaaaaat acgatgctga agtttttttc aaaagagaag ctcatcttgc
     4741 caatgatcgg gctgcaaaac ttcctgtcat gcgtgatgcc ttgctaagaa gtgaagagca
     4801 ttttaaaacg cgttttgaaa ctctcataga cttagatgct tcagccccgc ttcgctcaag
     4861 ccttgatata aaaaaagctt atgaaagttt tgttgaaaat gataattcca atctcatcac
     4921 cgcagttcct gctagacgta atccttattt taacctcgta gaaatacaaa ataacaaggt
     4981 agtaaaatcc aaagaaggaa attttaccac tcgccaaagt gccccaaaat gctatgatat
     5041 gaacgctagt atttatatct ttaaaaggga ttatctttta gaaaatgata gtgtttttgg
     5101 caaaaacaca gggctttttg taatggatga aagcacagct tttgatgtag atagtgaact
     5161 tgattttaaa atcgtagagt ttttaatctc tttaaaaaat ttatcgccaa aggattttta
     5221 atgcttgaaa ataaaatcat ctttgtagca ggagcttgtg gacgcatagg caaagtgctt
     5281 tgcaaaaaaa tacttcttaa taaaggcacg gtcatacttg cagatatcaa caaagaacgc
     5341 ttaaataaat tgcaagaaaa tttagaaaca aattttaaaa caaaactttt aagcttagaa
     5401 cttgacatca ccaaacaaga aagtttacaa attgcccttc aaaaaagtca agaaagatac
     5461 ggcaaaatcg atgcttttgt taactcaagc tatccttttg gcaaagattg gggtaaaacg
     5521 ccttattatg aactcaaata cgaacaaatt tgtgaaagtt taaatttaca tttagcaggc
     5581 tttatgttgg ctgctcaaga atttgtgaaa ttttttaaac aacaaggcca tggtaatatc
     5641 atcaatctta gctccatcat gggagtttat gcgccaaaat ttgaaaacta tgaaggcact
     5701 tccatgcaaa gctctttaga atacagtgtg ataaaagcag ggattaatca catgagctct
     5761 tggctagcta aagagctttt taatcaaaac atacgcgtta ataccctagc aagtggagga
     5821 attttggata atcaaaatga acttttttta aaagcttata gaaaatgttg tgcaagcaag
     5881 ggtatgttag atgctgatga tgtgtgcgga accttggtat ttttgcttag tgatgagagt
     5941 agatttatca cagggcaaac tttagtagta gatgatggat ggggcttatg atgaccttca
     6001 cccctactca aaaagaactc tttaacaaaa acattgaagc tttaagcaat attcttttaa
     6061 aagaaagttt aaaagaaatt aaatcaagta aatttgaact tgttttaggt aaagataatc
     6121 tagatatcaa tttaaaagat acaagtgata atacttttct ttatgaaaat gttattgatg
     6181 aattaaactc tatgctaaat acttataatg ataaatatct actttatcct gtattatatt
     6241 tttatggttt tggaaatgga a
//
LOCUS       DARBAR010000098         6068 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.098, whole genome shotgun sequence.
ACCESSION   DARBAR010000098 DARBAR010000000
VERSION     DARBAR010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6068
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.098"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..635)
                     /locus_tag="SB815_001433"
     CDS             complement(<1..635)
                     /locus_tag="SB815_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HEG0907151.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENQILQKLANTREFQDPTGDFNKTIYYELLNANNLAPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLK"
     gene            794..1732
                     /gene="rsmH"
                     /locus_tag="SB815_001434"
     CDS             794..1732
                     /gene="rsmH"
                     /locus_tag="SB815_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEG0907152.1"
                     /translation="MILEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKN
                     HPDLKFIACDQDQQALKFSKKRLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIG
                     VSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAH
                     FIAEKICLERSKNLIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKD
                     FLEHLENLKPKNCILAIISFHSLEDRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQ
                     IITKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            1732..2670
                     /locus_tag="SB815_001435"
     CDS             1732..2670
                     /locus_tag="SB815_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907153.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHTKKSNIYLKEDLINVKLEEKQSLAKKIFSKMKER
                     RKEENKKTKKNFLFSRKKANEIKNIQTKTQIQTKSNQATTQTKQEKKELTNSIEKIQK
                     TETKIQKPLIIEKKLDVKNQPNIKKSLENLQKKITPQENKQELPKPSNQAQEKQQNDE
                     DAQKAKNILLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(2658..3149)
                     /locus_tag="SB815_001436"
     CDS             complement(2658..3149)
                     /locus_tag="SB815_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907154.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLIRDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYTRKIISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKANLEQYVLDKII
                     HSK"
     gene            3299..>6068
                     /locus_tag="SB815_001437"
     CDS             3299..>6068
                     /locus_tag="SB815_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HEG0907155.1"
                     /translation="MNYYQELKKYLNNNLFTSYSLEIDFPKIYNFNANQKAFRDILTK
                     ITKIYDKNKFIKQNEHQFEDEFISKVLEILGWCFVRQDEKIIQGKLEKPDFLLFSNDK
                     LKSKYENLDKETKKSSNDFTIILESKAYNIEIDNKKVKDNPHFQILRYLGNLKKNYGF
                     LTNGRFWRFYDNSILNSNKVFYEINLEKIIEDQNIEAFAYFYSVFSAFNFTEKEDHLE
                     ITLQNNKLSKIKIEDDLKSIIYGTNGNESLFEFIGSRIYNKTKADLKLIYENSLYFIF
                     RLLFIAYFEDKFEIILEKHKYFKSKISLRTLLENLQEDESSSGGFGELENIFNIYNKG
                     KGNFDMPVFNGGLFDESKTALLSTPKIFNDKDLKFILNQLLNFKDKNLSFKRDYKTLS
                     VEHLGTIYEGLLSYFFEIANEDIYYVSYKEKSKEIECYFDNYDFKILEKSKKVEKYTF
                     YKKGQIYLKNTSNSRKASASFYTPQSIANFLIQSALKDKLNNENILKFKILDNACGSG
                     HFLVGVLNAITHIVLSDFDHFTNLKELYEEEKENILNHIKDFVQDYEVDESDILKRLL
                     LKRIIYGVDLNPFSIELTKLSLWIDSFIFTTPLSFIEHHIKCGNALINSNLSDFKDLI
                     KQNSSNLFTNSITQEFEILQEVFEKLDNLKDTNEEQIKQSKQIYQNEITPKLNKLNLY
                     LNYINTLHFVNKEELQILKALSQDDIQNLSQNEQAKAIISKYQKEFNFFNYELEFPEI
                     VENQVFKGFDIIIGNPPWDKTKFSDSDFFPQYKSDYRSLIASKKKEIQDNLLAKDYIK
                     QNYEKQKAYINDLSEYYKKAYPLNKGSGDGNLFRLFVEKNLSLLKQDGNLAYVLPSAL
                     MFEDGSLILRKEILENKTLEYFYSFENNKAIFIDVHRSYKFALMLIKNTQANHTHKIK
                     MMFYKTDIN"
BASE COUNT         2542 a          824 c          766 g         1936 t
ORIGIN      
        1 ttttttaaat cctcttcgtt aatcttaata ttttttttgt cataatcaat ttttgcaata
       61 cttaaagcat cttgcatgaa ataactagaa gctaacattt ttaattcctc atctttgcta
      121 ggaatattaa aaatttgatt aagtttatcg gtaattactt catttgcaag ttgtgtttca
      181 taatcttttg gagctaaatt attggcattt aaaagttcat aataaattgt tttgttaaaa
      241 tcccctgtag gatcttgaaa ttctctagta tttgcaagtt tttgtaaaat ttgattctcg
      301 ttcacaccaa tacccaaatc tttggcaaaa tttaacaaaa gcttatcttc aacaagagag
      361 cttaaagcta tatttttaat gcctagttgc tcagcatttt ctggagttaa agcaccattg
      421 ctaatttgat tataataact taaaatttgt ctatatctag tatcaaattc gctaaaacct
      481 atcttttcat ttcctacagt tgcaacactc gaacttctat tgagattaaa atcataagca
      541 ccccaaccta aaaagccagc gccaacaaaa gctatagtac taacccatat agtaacaaca
      601 agatattttt tgtgatgttg catccaagta agcatatcat tccttgatta aatttaaacc
      661 agatattgta tcgtagaagt gtttaagtgg agtttaatta taaaattttt accaaaaaat
      721 atttgttctt taaattttat gatttttaca atgaaattta gttataatta tagtttataa
      781 aaatttatta ggattgattt tggaaattcc tcatatccca gttttactta atgaagttca
      841 agagattttt aaaaatctta aaacaggtta ttttttagac tgcactttag gatttggcgg
      901 acatagtgaa gctttgctta aaaatcatcc tgatcttaaa ttcattgctt gtgatcaaga
      961 tcaacaagct ttaaaatttt ctaaaaaacg tcttaaagat tttcgcaata ggataacttt
     1021 tatgcaaagt aattttagtg aagttttaga aaaaatttca cataaagaag aattaagagg
     1081 tattttagca gacattggag tttcttcatt tcagcttgat aataacgaaa gaggttttag
     1141 tgtaaattct gactttttgg atatgagaat gaatcaaaac tccaaaatat cagcttatga
     1201 gattattaat acttatacaa aagagcaatt aacttccatt tttaaagatt atggagaatt
     1261 acatgatgca cattttattg ctgaaaaaat ttgcctagaa agaagtaaaa atctaatcaa
     1321 aagcgccaaa gagctttatc aaatcatagg aaaaggtaaa caaaatcata gaaaaatttc
     1381 caaagctact ttagcatttc aagccattag aatagaagta aatcaagaac ttaaagtgct
     1441 taaagatttt cttgaacatt tagaaaattt aaaaccaaaa aattgcattt tagctatcat
     1501 tagctttcat tctttagaag atagaatagt aaaacaattt ttcaaaaaat ggtcaaaaaa
     1561 ctgcatttgt aatgaaaaaa taatgcgttg cgaatgtgga aataaccata gcctaggaca
     1621 aataataact aaaaaagcta taagtgcgag caaggaagaa cttttaaaaa attctcgctc
     1681 tagttgtgct aaaatgcggg ctttttattt taataatttg gacaataaat aatgctagaa
     1741 gatgatttta taaaagaacg ccaaaacata cgccaaaaaa tgctgaaatt ttctcgcgcc
     1801 ataaatcaag gcaaaccgct tgatgatgat ttaagagatg aaatttctag cgatgatatt
     1861 ttaagacgtc gttttaaaaa aaagactcct aataaattct tagaagaact cgatgaagag
     1921 tatgagtcaa aacatactaa aaaatcaaat atatatttaa aagaagatct aatcaatgtt
     1981 aaattagaag aaaagcaatc tcttgctaaa aaaatttttt ccaaaatgaa agaaagaaga
     2041 aaagaagaaa ataaaaaaac taaaaaaaat tttttattta gcagaaaaaa agcaaacgaa
     2101 ataaaaaata tccaaaccaa aacacaaatt caaacaaaaa gcaatcaagc taccactcaa
     2161 acaaaacaag aaaaaaagga acttacaaat tctatagaaa aaattcaaaa aacagaaact
     2221 aaaatacaaa aacctctaat tatagaaaaa aaactagatg ttaaaaatca acctaatatc
     2281 aagaaaagtt tagaaaattt acaaaaaaaa ataacaccac aagaaaataa acaagaactt
     2341 ccaaaaccat ctaatcaagc tcaagaaaaa caacaaaatg atgaagatgc tcaaaaggca
     2401 aaaaatattt tactagaagg cttctctaat gctaccaaag aagatagaaa cctaaacttc
     2461 aatcatcttc tttttgcagc tttacttgtt agttttgcat tatttttatt tgccccacaa
     2521 atttatatta gaaatcaaat ttattatctt agtagagaga ttgctacatt aagaacagaa
     2581 gaaagtgttt taaacgagga aaataaagac ttaaaaagaa gacttgaaaa tatgcgattc
     2641 caaaatcaaa ttttagatta tttagaatga ataatcttat ctaaaacata ctgctctaaa
     2701 tttgcttttg gaatttcttc ttttaaagct tctttataaa attcacccgc cattgtagag
     2761 tacttttcat aagcaaaata aggaaagtgt aaagcccagg ctttttgtat tatttttttt
     2821 gagattattt tgcgagtata aactttaaaa atatcatatc ctataaatac acaagcagta
     2881 accataacag cgctcactat gcttatatga aagtcaagct ttgttaaaaa ataatgagta
     2941 atcaaaagca atggcaataa aatcacagcg caaaaaacac caaaataaat ataagaattt
     3001 agaattttga aattaaaatt tagcttagaa ggatctacaa gcattccatc gttaaaaagt
     3061 gcatttgcct ctaataaatc tcttataaga acaggttgct ctgatacttt aaataaaaaa
     3121 cgaaggctaa attctttaaa ttttttcata atccacgctt tattttttaa ttaaaatttt
     3181 atccaaagaa aattaattcc aactaaaaaa tcattttcat aaataagcac aagtctttaa
     3241 agttttttag atataattta aaatgtcaaa tttttaaaaa tactttagaa agaaagccat
     3301 gaattactat caagaactta aaaaatacct caacaataat ctttttacaa gctattcttt
     3361 agaaattgac tttcctaaga tttataattt caacgcaaat caaaaagcct ttagagatat
     3421 tttaactaaa attacaaaaa tttacgacaa aaataaattt ataaaacaaa acgaacatca
     3481 atttgaagat gaatttatat caaaagtatt agaaatttta gggtggtgct ttgtaagaca
     3541 agatgaaaaa atcatacaag gaaaattgga aaaacctgat tttctacttt ttagcaatga
     3601 caaattaaaa tcaaaatacg aaaatttaga caaagaaaca aaaaaatcaa gcaatgattt
     3661 cacaatcatt ttagagtcaa aagcttataa tatagaaata gacaataaaa aagtaaaaga
     3721 caaccctcac tttcaaattc taagatatct aggcaatctt aagaaaaatt atggtttttt
     3781 aaccaatggt agattttggc gtttttatga taattctata ctgaattcaa acaaagtttt
     3841 ttacgaaatc aatctagaaa aaatcattga agatcaaaat attgaagctt ttgcgtattt
     3901 ttatagtgta tttagcgctt ttaatttcac agaaaaagaa gatcatttag aaataactct
     3961 acaaaacaat aaactttcaa aaatcaaaat agaagatgat ttaaaatcta tcatttacgg
     4021 aaccaatgga aatgaatctt tatttgaatt cataggctct agaatttaca ataaaacaaa
     4081 ggcggattta aaactaatct atgaaaattc tttatatttt atctttaggc ttttatttat
     4141 tgcttatttt gaagataaat ttgaaattat actagaaaaa cataagtatt ttaaaagtaa
     4201 aatcagtctt agaaccttac ttgaaaattt acaagaagat gaaagctcaa gtggtggctt
     4261 tggagaactt gaaaatattt tcaacattta caacaaaggc aaaggcaatt ttgacatgcc
     4321 tgtttttaat ggcggtttgt ttgatgagag caaaaccgct cttttaagca cgccaaaaat
     4381 ctttaacgat aaagatttaa aattcatttt aaaccaatta ttaaatttta aagataaaaa
     4441 tctaagcttt aaaagagatt acaaaacttt aagtgtagaa catttaggca cgatttatga
     4501 aggcttgctt tcttattttt ttgaaatagc aaatgaagat atttactatg taagctataa
     4561 agaaaaatca aaagaaatag aatgttattt tgataattat gatttcaaaa ttttagaaaa
     4621 atcaaaaaaa gtagaaaaat acacctttta caaaaaagga caaatttacc ttaaaaatac
     4681 tagcaactca agaaaagcaa gcgcaagctt ttacacacct caatccatag ctaatttttt
     4741 aatccaaagt gctttaaaag acaaactaaa caatgaaaat attttgaaat ttaaaatact
     4801 agacaatgct tgcggtagtg gacatttttt agttggagtt ttaaacgcta ttacacacat
     4861 tgttttatca gattttgatc attttacaaa tttaaaagaa ctttacgaag aagaaaaaga
     4921 aaatatttta aatcatataa aagattttgt gcaagactat gaagtagatg agagtgatat
     4981 tttaaaacga cttttactaa aacgcattat ttatggagtg gatttaaacc cttttagcat
     5041 agagcttact aaacttagcc tttggataga tagttttatc tttacaaccc cactttcttt
     5101 tatagaacac cacataaagt gcggcaatgc tttgataaat tctaacctaa gtgattttaa
     5161 agatttgata aaacaaaact caagcaacct ttttacaaat tccataacac aagaatttga
     5221 aattttacaa gaagtatttg aaaaacttga caatctaaaa gataccaacg aagaacaaat
     5281 caaacaatct aaacaaatct atcaaaatga aatcacacca aaacttaata aactaaattt
     5341 atatctaaac tatatcaaca cgcttcattt tgtcaacaaa gaagaattac aaattctaaa
     5401 agccctaagt caagatgata tacaaaattt aagccaaaat gaacaagcaa aagctatcat
     5461 tagcaaatat caaaaagaat ttaatttctt taactatgag ttagaatttc ctgaaatcgt
     5521 agaaaatcaa gtctttaaag gctttgatat catcataggt aatccacctt gggataaaac
     5581 taaatttagt gatagtgatt tctttccgca atataaaagc gattatagaa gcttaatcgc
     5641 tagcaagaaa aaagaaattc aagataattt gctagcgaaa gattatataa agcaaaatta
     5701 cgaaaaacaa aaagcatata taaatgattt aagcgagtat tataaaaaag cctatccttt
     5761 aaacaaaggc agtggagatg gaaatttatt tcgtcttttt gtagaaaaaa atctttctct
     5821 tttaaaacaa gatggaaatt tagcttatgt acttcctagt gctttgatgt ttgaagatgg
     5881 aagcttaatt ttaagaaaag aaattttaga aaataaaact ttagagtatt tttatagttt
     5941 tgaaaacaac aaagctatct ttatagatgt tcatagaagc tataaatttg ctcttatgct
     6001 tataaaaaac acgcaagcaa atcacactca taaaatcaaa atgatgtttt ataaaacaga
     6061 tataaact
//
LOCUS       DARBAR010000099         6065 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.099, whole genome shotgun sequence.
ACCESSION   DARBAR010000099 DARBAR010000000
VERSION     DARBAR010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6065)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6065)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6065
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.099"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..469
                     /locus_tag="SB815_001438"
     CDS             <1..469
                     /locus_tag="SB815_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0907156.1"
                     /translation="KIEELKTNLSLKYDFLKDDFDNGFEGFKDGISKNIDSIFQSEKF
                     ALLRLKIEKLSNLKSDLYELETNLDTVIFDTFKEFKMSEILNSLNINGAFFEFLNDKL
                     KHYEKNQKSKLESLEKVLQSLKNQDANILNSFEENLEKIEKLKQLEMGLLNAD"
     gene            459..2288
                     /locus_tag="SB815_001439"
     CDS             459..2288
                     /locus_tag="SB815_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG0907157.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSAEELDNVLNYAKSVFLKYFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     VLKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYENFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAF
                     LAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHI
                     FQSDKNFSELRAFCNASDEYFLKDFKEFLFKSILELDLFFEKLNLKAFTNYENATKLS
                     LAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVYEFETLLINKPILTKI
                     AKNFLEQSQNLIQEKNKFLDLKKAELQKRRAQILNVRESIKED"
     gene            2288..2992
                     /locus_tag="SB815_001440"
     CDS             2288..2992
                     /locus_tag="SB815_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HEG0907158.1"
                     /translation="MRIFLTLFLFFNSLFALSELEEGLKLYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMHESARGVSKDLNQAYKFYDKACKLGLANACSNMALLLQNQGYENE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGEACYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            3128..3856
                     /locus_tag="SB815_001441"
     CDS             3128..3856
                     /locus_tag="SB815_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEG0907159.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKIRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFMEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMGLADMES"
     gene            3858..5579
                     /locus_tag="SB815_001442"
     CDS             3858..5579
                     /locus_tag="SB815_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEG0907160.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNYIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVGGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            5868..6060
                     /locus_tag="SB815_001443"
                     /pseudo
     CDS             5868..6060
                     /locus_tag="SB815_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857465.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         2255 a          722 c         1101 g         1987 t
ORIGIN      
        1 aaaaatcgag gagcttaaaa caaatttatc tttaaaatat gattttttaa aagatgattt
       61 tgataatggt tttgaaggtt ttaaagatgg aatttcaaaa aatatagata gtatttttca
      121 aagcgaaaaa tttgcacttt taagattgaa aattgaaaaa ttaagcaatc taaaatcaga
      181 tttatatgag cttgaaacga atttagatac ggttattttt gatactttta aagaatttaa
      241 aatgagcgaa attttaaact ctttaaatat caatggagca ttttttgagt ttttaaatga
      301 taaattaaaa cattatgaaa aaaatcaaaa atcaaaatta gaaagtcttg aaaaagtttt
      361 acagagtctg aaaaatcaag atgctaatat tttaaattct tttgaagaaa atttagaaaa
      421 aattgaaaaa ttaaaacaac ttgaaatggg gcttttaaat gcagattaat cttttaaatg
      481 attttataaa agcctatgaa aatacctata gcgtgagttt tgatgatagt tttaaagggc
      541 gtattcaaga gctttgcaag gaacttaacg agccttttat gcacgcaagt tatgctttag
      601 aaaatgaatt aaaagagctt gtgttttctt tggataagaa tgttaatatc gctattatag
      661 ggcagttttc aagtggtaaa tcaagtttgc taaatttgat cttagggcgt gattgtttgc
      721 ctacgggtgt tgttcctgtt acttttaaac ctactttttt acgctatgca aaagaatatt
      781 ttttaagagt agaatttgaa gatggaagtg atattatcac aaatatagaa aaattagcct
      841 tttatacgga tcaaagaaat gaagtaaaac aagcaaaaag tttgcatatt tttgcaccca
      901 ttcctttact tgaaaaaatc actcttgtag atactccagg tttaaatgca aatgaaaatg
      961 atactttaac aactcttgat gaacttaaaa atattcatgg ggcgatttgg ttaagtttaa
     1021 ttgataatgc aggtaaaaaa agtgaagaag atgccataaa agcaaattta gaacttttag
     1081 gagaaaatag catttgtgta ttaaatcaaa aagataaatt aagcgcagaa gagctagata
     1141 atgttttaaa ttatgcaaaa agtgtgtttt taaaatattt taatgagctt attgctattt
     1201 cttgcaaaga agctaaagat gagcaaagct atgaaaaatc taattttcaa tctttgcttg
     1261 attttttaac tcagctagat acaacagttt taaaagaaaa atttgttaaa agaaaaattt
     1321 taaatttatg cgaaatttta gaagatgaaa accaactttt tgtaggtatt tttgatcgtt
     1381 tattaaatca atttcaaagt tatgaaaagc atttactttt agcgtatgaa aattttttaa
     1441 aagagattga aattttaaat catcagattt tagaacagct taaaagcatt agcgaaagaa
     1501 tttctagtga aatttttgca agtgttaagg aaaaagatgc ttatttttac aaagaaagca
     1561 aaggattttt aaagaaagat ttatacacaa gatatgatta taaagcgcct tatatttcaa
     1621 gcgacgatgc ttttttggcg atgttttata atagtgatgt gatgagtaaa gagtttaaaa
     1681 aaatcaaaaa tgaactttat aaatcttttg aagaaatcaa gatgaaatta aaagatttta
     1741 taaacatact tgaaagagaa attttgcttt ttaaagcaga attttcaaac atacaaaaag
     1801 atcacatttt ccaaagtgat aaaaatttta gtgaattaag agctttttgc aatgcaagtg
     1861 atgagtactt tttgaaagat tttaaggagt ttttatttaa aagtatttta gagcttgatt
     1921 tattttttga aaaattaaat cttaaggctt ttacaaatta tgaaaatgct acgaaactaa
     1981 gccttgcatt ttttagtcgt aaaatcaatg aaagtcgtgt tctttatgag cttgatagtt
     2041 ctgaatttgt acttttttat cctaaaaaaa gtgaaattta tgaaagagtt ttaaatgaat
     2101 taaatgttta tgagtttgaa actttgctta ttaataagcc tattttgaca aaaattgcaa
     2161 aaaatttttt agaacaaagt caaaatttaa tccaagaaaa aaataaattt ttagatctta
     2221 aaaaagcaga gcttcaaaaa agaagagcac agattttaaa tgttagagaa agtataaagg
     2281 aagattaatg agaatatttt taactttatt tttatttttt aattcattat ttgcattaag
     2341 tgaactagaa gagggtttaa aactttacga ggcaaataaa tttgataaag cttatgaaat
     2401 ttttaaaagt ctttgtgaaa aagatatttc taaagcttgt ttttctttag cttttatgca
     2461 tgaaagtgct aggggtgtga gtaaggattt aaatcaagct tataaatttt atgataaagc
     2521 ttgtaaattg ggtttagcaa atgcgtgttc taatatggct ttgcttttgc aaaatcaagg
     2581 ttatgaaaat gaagctcttt tggcttttaa taaagcttgc actttaggag aatcattaag
     2641 ttgtaataat atagctttat tttatgaaaa agaaaaagat ggacaaatgg cctcaagttt
     2701 ttataaaaga tcttgtgatt taaaaaatgc aagagcttgt tatcagttag gatctttata
     2761 tgataaagga gagcttgtta aagcaagtgt aaaatctgct cttgcttttt attctaaatc
     2821 ttgcacttta ggttttggtg aggcttgtta tttgctagga cgctataatc aactagaaaa
     2881 acaagatcta acaaaggcaa aaagatattt tggtatggct tgtgatcaaa aacatcaaga
     2941 agcttgtgca gcttataaag aacttaattc taaagatata gagctttatt aaaagttcta
     3001 ttttcattac tttcaaagat atacttaaat aaaattaaga ataacacaaa atttatcgct
     3061 ttttaaagtt aaatttatat taataggact aatatagtct tgtttaaatt attatcaagg
     3121 agaagtaatg caagacaata ttattgatcg cagaagcttt tttaaactag ggcttctagg
     3181 tggttctgta gtagcagcta gcactatagg tggcggtgct gttttaaagg cagcagaact
     3241 tacgcattcg catcaagctt cacaaggaaa atcaaataaa attagaggta gaatgttttt
     3301 tcaaactcaa actgaatttg ataccttaag tgcagcctgt gaaagaattt atcctaaaga
     3361 tgagcaagga gaaggagcta taggtttagg cgtgccttat tttatcgata atcagctagc
     3421 tagtgcttat ggttataatg atagagaata tatgcaaggg cctttcatgg agggcaaagc
     3481 cgaacaaggc tatcaaactc ctatgcaacg caaagatatt tttttagaag gcgtgcatgc
     3541 tcttgaagaa aatgctcaaa agcgttataa aaaatctttt tctttgctta aaggtggaga
     3601 tcaggataaa attttaagcg attttgaaaa aggaaaaatt caaactacag gttttaaatc
     3661 ttcttatttt ttcacacttt taagagatat gacagtagct ggagttttag ctgatccaat
     3721 ttatggcgga aatgataata aaaatggttg gagaatgatg caatatccag gcgcacaaat
     3781 gagctatgtg gataaaattg caagtgatga attttttaac attgaaccta tgggtttagc
     3841 agatatggag agttaaaatg gctgaagtat taaaaaaagt agatgtagta acagttggag
     3901 caggatggac tggaggtata gtggctgcag agcttactaa agcaggtttg aatgtactta
     3961 gtttagaacg cggacatatg caaagtactg aaaattttaa ttatatccat gatgagtgga
     4021 gatatgggat taattatggt ttgatgcaag attgctcaaa agacactgtg acttttcgcc
     4081 atgatcctag tggtttagcc ttaccttatc gtaaaatggg ttcgttttta ttgggtaata
     4141 atgttggcgg tgcaggggtg cattggaatg gttggacttt taggtttatg ccttatgact
     4201 ttgaaattca aaccctaagc aaacaaagat atggtaataa attaggtaat gattatacct
     4261 tgcaagattg gggcgtgact tataaggata tggagcctta ttatgataga tttgaaaaaa
     4321 cctgtggggt atcaggtgaa ccaaatcctt tagcggaaaa aatgggagct tttagatcca
     4381 gtccttatcc acaagaacct cttgaaaata ctaaaatgct taaacgattt gaaagtgcag
     4441 caaaaagttc aaatttacac acttatcgtt tgccagcttc aaattctaaa ggtggctata
     4501 caaaccctga tggtcaagat ttagctcctt gtcaatactg tgcgtattgt gagcgttttg
     4561 gttgtgagta tggtgcaaaa gcaagtcctt taaacacagt aattccaaag gctatgagca
     4621 caggtaaata caccatacgc acttatagta atgtaacgca aattcttaaa aaagacggaa
     4681 aagtaacggg ggtaaaattt gtcgatacta gaacgatgaa agagtatatc cagcctgctg
     4741 atatagttgt acttacaagt tatatgttta acaatgctaa gcttttaatg gtaagcaaca
     4801 taggtgagca atacgatcca aaaacaggta aaggaacttt aggtagaaat tattgttacc
     4861 aaatgaacat gggcacaaca gctttctttg atgagcaatt taacaccttt atgggttcag
     4921 gtgctttagg aactacgagt gatgatttta acggagataa ttttgatcat tctaaggaaa
     4981 aattccttca tggagctatg atttatagcg ttcagcttgg aactcgccct atacaatcag
     5041 ccccacttcc agcaggagct ccaacttggg gtgccgaatt taaaaaagca ttaaactata
     5101 atttcacaag agctattacc gtaggagggc aaggtgcttc tttgcctcat aagaataatt
     5161 atttaagtct tgatccaact tataaagatg cttttggtat gccactttta cgcttaactt
     5221 ataatttcac tgatcaagat agagctttgc ataaatttat cacagataaa acagctgagg
     5281 tagcaaaaag aatgcaagga gtaaaatcaa tcaaaaaagg tgcttatctt aaggattata
     5341 gcgttgtgcc ttatcaatct actcataaca caggtggaac aaccatgggc gcagatagag
     5401 aaactagtgt ggttaatact tatttacaac actgggatgc ggataatctt tttgttgtag
     5461 gagcaggaaa tttccaacat aatagtggat ataatccaac tgatactgtg ggagctttgg
     5521 cttatcgctg tgctgaaggt attttaaaat atcataaaag tggaaaaagc ttagcttgat
     5581 aataacttga gagtttttga aaactctcaa gattataaat ttttaatttt cttccgatat
     5641 agtatataat atcaaggaag gcaaaaatga ttaatggtat aaattcttat tcaaactaca
     5701 attatacaaa aaggcaaatg tagtctgctc ttggagggtg gtatgcaaga tgattacttt
     5761 aagttctttt aatagatatt ttggaaataa tcctctgcag acacttacta aaattagaga
     5821 tgaaagtatt gaaaatgcaa aaatttaaat tataaaaagg ataaaaaatg ttaaatattt
     5881 tacatgcaaa ttcaagtcat cgtttccata aatgtatgcc taaggaagtt catcaaatat
     5941 atgatacttt aaagcttatg gaacagcaag aaggtacaaa aaaaagtaga agccaaaaaa
     6001 gaagagcaaa gtaattctac aaatacagat aaagcagata ataaaaaaat aaatttttag
     6061 acatg
//
LOCUS       DARBAR010000100         6048 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.100, whole genome shotgun sequence.
ACCESSION   DARBAR010000100 DARBAR010000000
VERSION     DARBAR010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6048)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6048)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6048
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.100"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            32..304
                     /gene="yajC"
                     /locus_tag="SB815_001444"
     CDS             32..304
                     /gene="yajC"
                     /locus_tag="SB815_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEG0907161.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            297..1877
                     /gene="secD"
                     /locus_tag="SB815_001445"
     CDS             297..1877
                     /gene="secD"
                     /locus_tag="SB815_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEG0907162.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSKEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKNNNTRFWFGYRRR"
     gene            1877..2848
                     /gene="secF"
                     /locus_tag="SB815_001446"
     CDS             1877..2848
                     /gene="secF"
                     /locus_tag="SB815_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEG0907163.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILENQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            2858..5287
                     /locus_tag="SB815_001447"
     CDS             2858..5287
                     /locus_tag="SB815_001447"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEG0907164.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYMQKLGKLINSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQSCGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            5284..5796
                     /locus_tag="SB815_001448"
     CDS             5284..5796
                     /locus_tag="SB815_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0907165.1"
                     /translation="MKKILIFCIGLFLGACGYIPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            5780..>6048
                     /locus_tag="SB815_001449"
     CDS             5780..>6048
                     /locus_tag="SB815_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907166.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGK"
BASE COUNT         2137 a          713 c         1184 g         2014 t
ORIGIN      
        1 gtgtttaatt tttttggaat aaaggaaaaa tatggcagaa aattcaattt taacttcatt
       61 gttacctctt gtagtgttat ttgcaatttt ttatttcttg gtgatcagac cgcaacaaaa
      121 acaagcaaaa gcacataaac aaatgcttga gtctttgcaa aaaggagata aaatcatcac
      181 taatggcgga cttatttgtg aagtcgtaaa accagaggag gattttatca aagttaagct
      241 taatgaagac aatgttactg caaaaatttc aagagaattt atagcaaaga aaattgatgc
      301 gtaattctaa aatcaattat cgcttgatta tttttatagc ggtatttatt tttggagtgg
      361 ctttttcact cccttctttt ttgcagtcag aacgtggtgc gaagattaat ttagggcttg
      421 atttgcaagg tgggctttat atgctcttag gtgtagataa tgaagaagct gtaaaatcta
      481 aaataaaatc aattgcatct tcattgagtt attcttttaa taaagaaaat attttaaatg
      541 atggcttaaa tacccatgat gatattttag aatttacttt gcttgataat gcagatattg
      601 caaaagttga aaatttgctt aaagaaataa aaggaattaa tatacaaagt gaaaatatgc
      661 actataaaat ttcttttacc tcaaaagaag taaaaaatat agaaaatttt gcacttttgc
      721 aagcagttga aaccataaga aataggcttg atcaatttgg tttagcagag ccaacagttg
      781 ctaaacaagg tgatgataag attttggttg aacttgcagg gattaaaacc aaagaagatg
      841 aactaagagc aaaagaacgc atcacaaaag cagcacattt gcaacttatg gaagttgatg
      901 attctaaaat gggtcaagct tctacaatga gcgatgctga ggctgcgagt tatggactga
      961 ttttagtgcc tgattctaga aatccaaatt taaaatatac cttaaaaagt atacctattt
     1021 tagatggatc tatgcttact gatgctagag taggacttag cgataagagt aattatcctg
     1081 tgattaattt tactttaaat gccgagggtt ctaaaaaatt tgctgattat acaggagcaa
     1141 atgttggaaa gcgtcttgct attgtacttg ataataaagt atattctgct ccatctatca
     1201 atgaacgcat aggcggaggt agtgggcaaa tcagtggagc ttttactcaa gaagaagcac
     1261 gcgatgtggc ggtagcttta agaagtggag ctttgcttgc gcctgtaaaa ttacttgaac
     1321 aaagaagcat aggaccatct ttaggtgctg atagtattaa aatgagtatg atagccttaa
     1381 tcggtgcatc agtttttatt gtagtattta tgatgatgta ttacggtgtg gcaggaattt
     1441 ttgcaaatat tgcaatgcta gttaatgttt tggtagtagt tgccgttatg gctatgtttg
     1501 gagcaacttt aactttacca gggatggcag gacttgtttt aactgtgggt atggcagtag
     1561 atgcaaatgt gattatcaat gagcgtatac gagaactctt gcgagatgga gtaaatataa
     1621 gagttagtat agaacaaggt tataaaaatg ctatgagtgc gattatagat tcaaatatca
     1681 cttctttagt tacttcggta gcgctttatg cctatggaac aggagcagtt aaaggttttg
     1741 ctgtgacttt gggaattggt atcgttgttt ctatgattac agctatttta ggaactcatg
     1801 gaatgtttga ttattttatg caacgcatag aaaaaaataa taatacaaga ttttggtttg
     1861 gttataggag aagataatgc agttttttag cgaaaagaaa atttatgatt ttatgagaat
     1921 gcgttttgct gctatttccc tttcttttat tttgtttttt ggttctattt atttactttg
     1981 ggataggggt ttgcaatatg gcattgattt tagcggagga actttagttc agcttaaata
     2041 tgaaaatgca gctcctataa cgcaaattcg agaaatttta gaaaatcaag gaacttttca
     2101 aaatttatct gtaactgagt ttggaagcaa tgaagaagta actatacgct ttttaggaag
     2161 taatgataat gtaagcaatg atataggtga gcatataagc actcttttaa aggatacggg
     2221 aaaatttgaa gtgcgtcgtg ctgatgtggt aggtccaaaa gtaggtgatg aacttagaaa
     2281 taaaggactt atggctatag ctgtatcttt gatagcaatt ttaatttata tagcgttgcg
     2341 ttttgagtgg cgttttgctc ttgcggctat aatcagtgaa attcatgatg ttgtgattac
     2401 tttaggagca atttctttat ttaaaattga tgtcaatcta gatactttgg ctgctgtttt
     2461 aactgtgctt ggatactctt tgaatgatac aattattatt tttgatagaa tcagagaagg
     2521 tattaaaaca agtaaaaaaa ccgaacttgc acctattatt aatgaaagtg tttcagcaac
     2581 tttatcaaga acggttttaa cttcagggtt gactttagca accgttgtga tactttattt
     2641 ctttggcggg gaaatgatac aaggattttc tttggcttta attgtaggta ttatagcggg
     2701 aactttaagc tctatttttg ttgcaagtcc gacattatta tggtttaaat ttagtgtgct
     2761 tgagtttaga aataaagaaa ttgaaaaagc aaaaagaaaa caagataaag aacgcaatcg
     2821 tgcaatgtat gaaaaaggaa ctgtgtaagg agaatttatg gcttatgaag caagtttaat
     2881 agaaaaaaaa tggcaaaaaa tttgggatga aaatgaatat tttgagccaa aagatgactt
     2941 aaatttgcct aaaaaatata ttttatcgat gtttccttat cctagcggac gcattcacat
     3001 ggggcatgta agaaattata ctataggtga tgctttagca agatattatc gcaagatagg
     3061 ttttaatgtt ttacatccta taggttttga tagttttggc atgcctgctg aaaatgcagc
     3121 tattaaacat aaaattcatc ctaagtcatg gacttatgaa aatatagctt atatgaaaaa
     3181 agaacttttt tctttaggtt tttctttttc taaaaaaaga atgcttgcta cttcagatcc
     3241 actttataca aaatttgagc aagaattttt tattaagatg tttgaaaaag gtttgattta
     3301 cactaaagaa gcaaatgtaa attggtgtga acaagatcaa acggttttgg ctaatgagca
     3361 agttgaagac ggaaaatgtt ggcgttgtgg tcatgaagtg gtgcagaaaa aaatgccagg
     3421 ttattatgta aaaattactg cttatgctga ggaactttta aaagatttag aagaattaaa
     3481 agataaatgg cctaatcaag ttttaactat gcaagaaaat tggattggta aaagcgaagg
     3541 tttggaattt tctttaaatt tagacgaaga aagtaagcaa aaaaccaaag aaagttcttt
     3601 agaagttttt actacaagag cagatacaat ttatggagtt tcgtatatcg ctttagctcc
     3661 agaacataag attgttcaaa atttgctttc acaaaattta ttaaatcaag atgtattaaa
     3721 taaaatcaaa gttattcaaa atcaaagccc aagagaaaga caaagttctg aaaaagaagg
     3781 ttatttttta ggaatttatg ccattcatcc tttaagcgga gaaaaaattc ctttatgggt
     3841 ggctaatttt gtcttggctg attatggtag tggagcggtt atggctgttc cagctcatga
     3901 tgaaagagat tttgaatttg caacaaaata taatcttgcc atcaaacaag ttattcaaac
     3961 tcaagaaaat ttaccttata tgcaaaaatt aggaaaatta attaatagtc aagaatttga
     4021 taatcttgat tgtaatgaag caagattaaa aatcatttct cagtttgaag ctaaaaatat
     4081 aggaaaaagg gttgtaaatt ttaaaattcg tgattggggt gtttcgcgtc aaagatattg
     4141 gggtgcgcct attcctatga ttaaatgtca aagttgtggt atagtacctc aaaaactaga
     4201 aaatttacct attactctgc ccgaagatgt gcaaattaca ggtgagggta atccacttga
     4261 taaacatcca acttggaaaa attgtatctg tccaaaatgt ggtaaagagg ctcaaaaaga
     4321 aagcgatact ttagatactt tttttgaaag ttcttggtat tttgcacgtt ttgcaagtga
     4381 tgagaaaact tggcaggaaa aagctttaga tgaaaaaagt gtaaagtatt ggatgagtgt
     4441 ggatcaatat ataggtggta ttgaacatgc aatcttgcat ttactttatg cgagattttt
     4501 ccaaaaagct ttaagagatt tgggttattt aacacaaaat gaaccttttg atagactttt
     4561 aactcagggt atggtgttaa aagatggtgc taaaatgtca aaatcaaaag gcaatgttgt
     4621 agatcctgat gagattatag aaaaatacgg tgctgatacc gcaagacttt ttatactttt
     4681 tgctgcgcct ccggctaaag agcttgaatg gaatgatgat gcggttgaag gggcttatag
     4741 atttatttgc aaactctatg atagggcgca aaatgttaaa aaaggtgagc ttgtagaatt
     4801 aaaacaagaa aatttaaaca aagaagaaaa atatgcaaga ttaaaggtat atgaagcttt
     4861 gaaaaaatct tttgaagttt atcatcaaag ttttgctttt aatactttaa ttgcagcttg
     4921 tatggaagct ttaaatgctt tagcactttg taaaaatgaa gctttggagc aagaggcttt
     4981 ttatattatt ttaaatattt tagagcctat tattcctcat gtttgttttg agcttagcga
     5041 ggagcttttt aaatgtaaaa atttcaaaaa attagaactt aaagaagagg tttttgtaaa
     5101 agatacttta aatttagctg taagtattaa tggtaaaaaa agggctgaat ttgaaatttc
     5161 aagtagtgcg agcaaagaag aaattttagc ttttgcaaaa gaaaatactg ctaaatggct
     5221 tgaaggtaag agtatagtta aagaaattta tgtggaagga aagctagtta atctagtgat
     5281 taaatgaaaa agattttaat tttttgtata ggtttatttt taggtgcttg tggatatatt
     5341 cctacatcaa aaatcgctaa taatattttc gatgagaagg tttatgttaa tgttgaatta
     5401 agtcaacaag acccaaaaaa tagtatctat gttgccgata ctttaaaaga aatggtaatt
     5461 tcaaaattag ggcgtaaact tgctttaaaa cacgaggcag atgatgtaat taatgttaaa
     5521 atgaataatt tagaatttat tcctttagct tatgataaaa atggctatgt tattagttat
     5581 aaagctaaat taaatttaga ttttaatgtt gtctttaaag atggttcaag tcaggctttt
     5641 agtacaagtg gaagttataa ttttgaaatt tctccaaata gtattattag tgattctgca
     5701 aggtatgagg ctattcgagc agcttcaagc gaggcatttg atgagtttat ttccgtaatt
     5761 gctattaaag ggcaaaaacg tgattccaaa tactaatgaa atagcaaagc aaactttaat
     5821 tgcattaaaa gaaagaaaac taaaaccaac tcctgaaaat tatacggaaa tttttgaaga
     5881 attatcttta aaatatggta tcacaagctc aaataaagct aaacttgaca aatacaaaac
     5941 cttgcttttg ccgatttatc aacaagaatt aaattctaaa actataagaa gtttagaaga
     6001 actaattagt tttttaattt ctgttttaaa tagacaaagc ggaaaaca
//
LOCUS       DARBAR010000101         6045 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.101, whole genome shotgun sequence.
ACCESSION   DARBAR010000101 DARBAR010000000
VERSION     DARBAR010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6045)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6045)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6045
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.101"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            48..782
                     /locus_tag="SB815_001450"
     CDS             48..782
                     /locus_tag="SB815_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907167.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGANVLKKVEISL
                     EFDGNNLKENENKLIDAVNTVISGFFYEDIFTEIGKNNFKKTLEKFLDKKYKIKLDDI
                     YIISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVPSVEKIPTPS
                     VPNLEVKQVEQLFKDPDEENKNDNGEINIDNLNTPKMTPDIEEKIKRDLIANPPQIFK
                     ENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(779..1288)
                     /gene="lolA"
                     /locus_tag="SB815_001451"
     CDS             complement(779..1288)
                     /gene="lolA"
                     /locus_tag="SB815_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HEG0907168.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLVAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDVFKAK
                     IPQNYDIVR"
     gene            1388..3976
                     /gene="secA"
                     /locus_tag="SB815_001452"
     CDS             1388..3976
                     /gene="secA"
                     /locus_tag="SB815_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEG0907169.1"
                     /translation="MFLNTLKAVFGTKNDREVKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3973..5178
                     /locus_tag="SB815_001453"
     CDS             3973..5178
                     /locus_tag="SB815_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0907170.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            5201..5986
                     /locus_tag="SB815_001454"
     CDS             5201..5986
                     /locus_tag="SB815_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG0907171.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELVRGTPLLVQVLLIYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK"
BASE COUNT         2138 a          705 c         1108 g         2094 t
ORIGIN      
        1 attttttaga tctcgaaata caagaacaaa tcatttaaag gcattaaatg aaaaaaatat
       61 ttttaagtgt ttttttggtt ttgagtttaa atgctcaaaa tcttgaaata gataaaataa
      121 gaacagattt gtattctaaa agtggagcaa atgttcttaa aaaagttgaa atttctttgg
      181 aatttgatgg gaataattta aaagaaaatg aaaataagtt aattgatgct gtaaatacag
      241 taatttcagg gtttttttat gaagatattt ttacagaaat tggaaaaaat aattttaaaa
      301 aaactttaga aaaattttta gataagaaat ataagattaa actagatgat atatatatca
      361 tatctttaag tggagtggaa aaatttgatt tagaggagtt taaacgcttt ttagaaagta
      421 ctgaggctaa agagaagggt atgggtagcg aggtaaaaaa agcacttgaa aacttagaag
      481 ttcctaaaac tcaagttcct agtgttgaaa agatcccaac tcctagtgtt ccaaatttag
      541 aagtcaagca agttgaacag cttttcaaag atccagatga agaaaataaa aatgacaatg
      601 gagaaatcaa tatagataat ttaaatacac ctaaaatgac tccagatata gaagaaaaaa
      661 ttaaaagaga tttaatcgcc aatcctccac aaatattcaa agaaaataac gcaagcaagc
      721 cttatcattt gccacaaaca ggctatgata taaagcttga tgagaattca acgcaaaatt
      781 agcgaactat atcataattt tgcggaattt ttgctttaaa aacatcggaa ttaatttttg
      841 gatttttaat ttgattgttt agattgatta taacatcatt ttcaaattca tctttatagg
      901 atatgctttg aatttgctct tgattgagtt taattgtata atttatatta tcatattttg
      961 ctacaagttt atctttgtct ataagacttg cttttttgaa aatttcatta agatttggaa
     1021 tgttatcaag atgagagaaa atgacttgtt ctagatcgtg ctctactatg gttacttgat
     1081 ttttgttgat ataaatctct tttttactag gagtatcata actccaatat gcttgatctt
     1141 tactcagtat aaaatgccca gaataagaaa gtgtagagtt tttggatttc actatttggg
     1201 taaaattgct tgaaaaggta ttaaaattaa gatcaagggc aaaaagttgt cctataaaaa
     1261 taaaaaatat caagaatgtt tttttcattt attttcctta aaaaaatata ttttttatgt
     1321 cattctagct aattttaatt aaataatcgt tataatgata gtttgaaaaa tttataaagg
     1381 tttagaaatg tttttaaata ccttaaaagc cgtgtttggc acaaaaaatg atcgtgaagt
     1441 taagaaatat ttcaagcgtg tagcacaaat caatgcttta gaaggcaact atcaaaattt
     1501 aagcgatgat gaattaaaag ctgaatttgc aaaatttaaa gagcaaattt taagcggaga
     1561 aaaaaacgaa aatgatgttt taaatgatgt ttttgctata gtcagagaga caggtaagag
     1621 aactttaaat atgcgtcatt ttgatgtgca gttaatcggt ggtatggttt tgcacgatgg
     1681 aaaaatcgca gaaatgaaaa caggagaagg taaaactctt gtagcaacct tacctgttgt
     1741 tttaaatgcc atgagtggca aaggcgtaca tgtcgttaca gtaaatgatt atctagccaa
     1801 aagagatgct gagcaaatga gtgcgattta taatttttta ggttttagtg ttggcgtggt
     1861 gctttcttct caaaatagtg atatagaaca caagcaagct tatgattgtg atattactta
     1921 tggaaccaat aatgagtttg gttttgatta tttgcgtgat aatatgaaat tttcaaaagc
     1981 tgaaaaagtt caaagagagc ataattttgt tatcgtagat gaagtagata gtattttaat
     2041 tgatgaggca agaactccgc ttattatcag tggtcctaca aatcgtactt tagatggtta
     2101 tattaaagcc aatgaagtag ctaaacaaat gcaaaaaggt gaagcagttt taccccctgc
     2161 aaaacctgag ggtgattttg tagtagatga gaaaaatcgt aatattttaa ttacagaagc
     2221 aggtattgct aaggctgaaa aactttttgg cgtagaaaat ttatacagtc ttgataatgc
     2281 tatcttagct catcagcttg atcaagcctt aaaagcacat aatctttttg aaaaagatgt
     2341 gcattatgtt ttaagaaata atgaagttat catcgttgac gaatttacag ggcgtttaag
     2401 cgaaggacgt cgttttagcg aaggattgca tcaagcttta gaagctaaag aaaatgtaaa
     2461 aattcaagaa gaaagccaaa ctctagcaga tattactttt caaaattatt ttagaatgta
     2521 caataaactt gcaggtatga caggaactgc acaaacagaa gcgactgaat tttctcaaat
     2581 ttatagttta gatgttattt ctataccgac aaatattcct attaaaagac aagataaaga
     2641 tgatcttatc tataaaactc aaaatgaaaa attcaaagct gtaattgaag agattaaaaa
     2701 agccaatgct aaaggtcagc ctgtacttgt aggaaccgca agtatagagc gcagtgaagt
     2761 ttttcacaat atgcttgtaa aagagaaaat ccctcatcat gttttaaatg ctaaaaatca
     2821 cgagcaagaa gctttgatta tccaagatgc aggtaaaaaa ggtgctgtaa ctattgctac
     2881 aaatatggca ggtcgtggtg tggatataaa aatcgatgat gagattaggg ctttgggtgg
     2941 gctttatatc atcggtacag aaagacatga aagccgccgt attgataatc aacttcgtgg
     3001 tcgtgcagga aggcagggtg atcctggaat aagtcgtttt tatctaagtt tagaagataa
     3061 tcttttaaga atttttggtg gggatcgtat taaaagtatt atggatcgct tgggcataga
     3121 agagggcgaa agcatagagt caagaatcgt tacaagagcg gttgaaaatg cgcaaaaaaa
     3181 agttgaaagc ttgcattttg aaagcagaaa gcatttgtta gaatacgatg atgtagcaaa
     3241 tgaacaaaga aaaactattt atcgttatcg taatgagctt ttagatgaaa actatgatat
     3301 tagagctaaa atttctcaaa atatcgctga atatagcgca aatgtaatga atgattatat
     3361 gcttgacgaa agcggttcta atgtaaattt tgaaaatttg aaagcaaaaa ttttgtatga
     3421 atgttcaact cagattagtg aaaaagattt tgagaattta agcgtcattg aaatgcaaga
     3481 caagctaagt caaattcttg aaaattctta taatgaaaag atgttaagac ttgagattaa
     3541 agaattgcgt aatatagagc gtattttata tttgcaagtt ttggataatg cttggagaga
     3601 gcatttgtat caaatggata ttttaaaaac aggaatagga cttcgtggat acaatcaaaa
     3661 agatcctctt gtggaatata agaaagaaag ttataatctt ttcttggagt tggtcaatcg
     3721 tattaaattt gatagtatta aactactttt tagcgtgcaa tttaatcaag aagaggcgca
     3781 aaatttagaa aataaagcca atgaagaaaa tgaaaagcta cttcaaagct cagtagaaat
     3841 gggcgcaagc gaagataatc ttggcgaagc tgaatttaaa aaagttccac gcaatgctcc
     3901 ttgtccttgc ggaagtggaa aaaaatttaa agaatgccat ggaaaaagtg gtcctaagca
     3961 aggaatttta gcttgaataa aagcgtttta aaatatttac tttttaagta tttaagattt
     4021 gataaagagc aaccctttat caatctttct atgcttttgg cctttttagg agtttgtgta
     4081 ggactttgcg ttttgcttgt agctatggca attatgaatg gttttgataa agaatttgaa
     4141 aaacgctttt ttgtgatgaa ttatcctatt actattttgc ctaaattcta cgctcctgta
     4201 aatgatgaat ttatagatga gttaagaaaa acatttccaa atttgttatt tagcccttat
     4261 ttaagcactc aagttgttgt aaagggagat aatcgttttg aaggtggtgt gctttttggc
     4321 gttaatttta atgatgaaaa aaaaataaac gaagtggttg ctaaagcttt aaaggatgag
     4381 aatttaagtg gttttgatat acttgtagga tcagcactta ctgatgaatt tggtttgcat
     4441 aaaaatgaca aactttcact tattttttca aatcttaatc ctagtggatt ttctttagta
     4501 ccgcaaacta aacgttttga tgttaaagcg cgttttactt cagggcttgc attttatgat
     4561 aaagcttata tgtacacaga tgttgatgca ttgaaaaaag tacttggaat acctaaaaat
     4621 ccaaattatg atggaattca tgtatatagc gataatgctt ttaaggatgt tgaaaaaatt
     4681 aaatcttatt taaaagatga ttatgctgtg gtgggttggt gggagcaaaa taaaaatttt
     4741 ttttcagcct tagaacttga aaaaagagcg ctttttatag tgttgatgct tattattttg
     4801 gttgcaagtt taaatatagt aagttcttta ttgatgatag taatgaatcg tcgcagtgaa
     4861 atagcacttt tacttgctct aggtgcaagc aaaaatgagg taaaaaagag tttttttgcc
     4921 ttaggtatgc ttattggtgg tggtggtatg atagtgggtg tggtacttgc attttttgct
     4981 ttatggcttt tgggaaattt tgatattgta actttacctg ttgatgttta tggaaccagt
     5041 aaattaccac ttgatttgtc tttaatggat ttttctttaa ccattgtggg tgctttaata
     5101 atcatagctt tatcatcttt ttatcctgca aaaaaagcaa ctcaaattaa tattttagat
     5161 actttaagaa atgaataaat tgtaattttg gagattttta ttgtctttgt ttactcaaaa
     5221 aaataagaat tttaaacctt taaaacctct atcaaagtca aaaataatca ctaatttaat
     5281 tcttttgatt ttatttttaa tattgttttg ttattgtagt tttagtataa gtgcttatca
     5341 ttttgatttt agcgcaattg caacctataa agaaaaattt cttcaaggtt ttttaaatac
     5401 tttaataatc agtttttttt ctttattgtt gagtataatt ttgggtggag ttttttgtgc
     5461 tttttcttta agttcgattg tttttttaag atttttatct acattttaca tagagcttgt
     5521 cagaggaacc cctttactag tgcaggtatt attgatatat tatatcattg caaataattt
     5581 aggacttgat aatcgatatg tggctggagt tattatttta tcatgttttt ctgctgctta
     5641 cttagctgaa atatttagag ctggaatttt aagtatttct atatctcagc ttgagagcgc
     5701 tagggcttta gggttaaaag agatgcaggt ttttgcgtat gtaatttttc cccaagcttt
     5761 aaaaaatatt ttagcaccgc tgagtggaca atttgcaaat ttaattaaag atagttcctt
     5821 attaagcgtt attgctgtaa atgaattaac ccaaagtgcg caagagataa attcttatac
     5881 ttttgctact cttgaagctt atgtaatttt ggctattaca tatcttgttt tgactttacc
     5941 tataagtata ttttctcgtt atttggagag aaaatgccaa aaatgattta aaaaagcttg
     6001 acaaatagag ctaattttgg cataatcaca tttttatttc agaaa
//
LOCUS       DARBAR010000102         5887 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.102, whole genome shotgun sequence.
ACCESSION   DARBAR010000102 DARBAR010000000
VERSION     DARBAR010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5887
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.102"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            72..2162
                     /gene="cfrA"
                     /locus_tag="SB815_001455"
     CDS             72..2162
                     /gene="cfrA"
                     /locus_tag="SB815_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HEG0907172.1"
                     /translation="MKKICLSVCAIGLLSSYAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVISKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSFLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRISYLANDYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SPGSAPDSLTGGYADIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNNGREVVGQAN
                     QPFLGQNRDIVAEDIILDTKSVIPLGQSHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDNLRLTFGARYNHHEIFGNNISPRAYLVYNPTDELTLKGGVSTGFRTP
                     YANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISTQRYDKGNMIPGIGTCDADRCFKAINHGKVEYKGIELGAGISPLDNLNVNFAYTY
                     LDSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKITPWIKGEWQIDRYMGDTNIN
                     REYYKDIFFASMGVRYDINKQWSINAAIYNLFNKSFTDGWESYQNSGAPTWVNTYNRI
                     EEGRRMYISINGSF"
     gene            2465..3256
                     /locus_tag="SB815_001456"
     CDS             2465..3256
                     /locus_tag="SB815_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HEG0907173.1"
                     /translation="MKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRVY
                     LKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEFE
                     IYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIEK
                     IALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLEF
                     EPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            3253..3783
                     /gene="grpE"
                     /locus_tag="SB815_001457"
     CDS             3253..3783
                     /gene="grpE"
                     /locus_tag="SB815_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEG0907174.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKDEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            3805..5676
                     /gene="dnaK"
                     /locus_tag="SB815_001458"
     CDS             3805..5676
                     /gene="dnaK"
                     /locus_tag="SB815_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEG0907175.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVTDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLANEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
BASE COUNT         2194 a          772 c         1145 g         1776 t
ORIGIN      
        1 atttatatta aattaataat tattatcata atattttgat ttctaaatca atatttgaca
       61 aaaggagaaa aatgaaaaaa atatgtctat cagtttgcgc cattggtctc ttaagctcct
      121 atgccatatc gcaaaatgta gaactagata gctcaatcgt tagtgcttct ggctttaccc
      181 aagatattaa agaagctcct gctactatca atgttatcag taaaaaagaa ttacaaagta
      241 agccttatag agatgttgca gaggctatcg cagatatccc aggcgttgat ttatatgcta
      301 gcaagggaaa aacaggttct tataatatca ctatgagggg tattactgga tatactttgg
      361 ttttgattga tgggcgtcgt cagggtattg gcggagaggt gggccctaat ggttttaatg
      421 aaatttcaaa ttctttctta cctccgattt ctagtataga aaggatagaa gttataaaag
      481 gccctatgag tactttatat ggctctgaag ctttaggcgg ggtggtaaat atcattacca
      541 aaaaagtaag tgataaatgg gaaacttctg taagtttgga tgctctttta aatgaaaata
      601 aagattgggg taatacttat ggaacgagta tttattctag tggtcctttg atgaatgaca
      661 aattgggtct aacacttcga tttagagaat tttacagaca gcaatctaat gttgaattta
      721 caaatggaag tggacaaaga gttcaaggag atcaagctca aagtcccaca aaagcaaata
      781 attttaatat aggaacaaga attagttatt tagctaatga ttataatacc tttatatttg
      841 atatagattt ttcaagaaat cattacgata acaaacaggg tcaattagga accatcacaa
      901 gcccaggtag tgcgccagat agcttaacgg gtggttatgc agatattatg gaagttgata
      961 aatttgtgac ttatttaagc catgagggtg tttatgaaaa cttttctatc acttctggtt
     1021 tgcagtataa tagagtaagc aataatggac gcgaagttgt aggacaagct aatcagccat
     1081 ttttaggaca aaatagagat atagtcgcag aagatattat cttagatact aagtctgtca
     1141 ttcctttggg acaaagtcat attttaagcg caggtggtga atataggctt gaaaaaatgc
     1201 aagataaaat agctaatccg accaattttg atcagtattt attggcaata tttgcagagg
     1261 atgagtacag cataaaagat aacttaagat tgacttttgg agcaagatac aatcatcatg
     1321 aaatttttgg aaataatatt tcgccaagag cttatctggt ttataatcct actgatgaac
     1381 ttactttaaa aggcggtgta tctacgggtt ttaggactcc ttatgcaaat cgtttgataa
     1441 atggagctta taattatagt ggtcaaggta gattccctat atatggaaat cctgatttaa
     1501 aagaagagac atctttaaat tatgaaatag cagctattta caataatgat ttgttttatg
     1561 tttctgcgac aggtttttta acaaatttta aagataaaat ttcaacccaa agatatgata
     1621 aaggcaatat gattccagga attggtactt gcgatgctga tagatgtttt aaggcaatca
     1681 accatggcaa ggttgaatat aaaggtatag agcttggagc agggataagc cctcttgata
     1741 atttaaatgt aaattttgct tatacttatc ttgatagtga ggttaaagaa gcacaagata
     1801 aaagtgtgat aggtaaacct gagcaggata gtttaaaaca caatatcatg ttaaaaactg
     1861 aatacagctt ctataataaa attacccctt ggataaaagg cgaatggcaa atagatcgct
     1921 atatgggtga tactaatata aatagggaat attataagga tatctttttc gcttctatgg
     1981 gtgtgcgtta tgatatcaat aagcaatgga gtatcaatgc agctatttat aatcttttta
     2041 acaaaagttt tacagatggt tgggaatctt atcaaaatag cggtgctcct acttgggtca
     2101 atacttacaa tcgtatagaa gaaggaagaa gaatgtatat ttctatcaat ggtagctttt
     2161 aagctttaat agaaaaacta aagggctttt aaagtcttct ttagtttttt attttaatac
     2221 cctatacctt taaaaaacta gacaatcaat tcaatttaaa attttcatct tatttttatc
     2281 gttgcatttt caatcttaaa agatagctta tccttataaa aaagtaacta ataaaacttt
     2341 agtcatatag actaaataaa attaagtata ttttttatat ttacacttga caaaataaca
     2401 ctcaatgttg tataatatat ctagcaatca aaaaatagag tgctaaaaat ttaaggaaag
     2461 agctatgaaa agccgagata aaaaggattt gattttagag tctattatcc aaacttatct
     2521 tttggataat gcgcctattg gttctaatga gttaaattca aacctttgca tacctgcttc
     2581 gactatacgc gtttatctta aaagacttag cgatgagggt ttgatcactc agcttcatat
     2641 aagtagtggt agaattccta ctattttaac gatgcaaaat tattggcaaa gtttttggga
     2701 aaaagaacaa gataaaaata tccatatcaa aaacgaaagc tttttgaaag agttaagtaa
     2761 agaatttgaa atttattgtc ttgtttatgg aggtagaagt ttagtactta aagaagtact
     2821 agatcttaat actaaattta tagtgcttga ttttgaagat gaagagctgg ttttaaaata
     2881 cgaaaaagaa gcgtggaatt ttttacaaag tcttataggg cttgatcttt ctagtataga
     2941 aaaaatagct ttgagagttc attttataga tcttgtagaa aaaatagcta gcttaagaca
     3001 aaatttgatt tgctatagaa gcaatgaaga aagagcttat caaatttatc aaaatgatga
     3061 atttgttaag ctcttagatt gtcaaattca ccgtcatttt aaagaaagtc ttgaatttga
     3121 acctttattt aaagaaggtt ttatggggct taaggtggat gcgcagtttt tgggcgaaga
     3181 tgtaaatatt atcttagcag gtagtgttta tacggattat aaaaaaatat tacaatatat
     3241 aaaggaggcg gcgtgagcga gcaaaagcaa gaatttgaaa acgaaaacgc agaaaattct
     3301 gaacatttgc aagatgagaa tttgcaaaat atcgaagatg ttgagcaaaa caaattgcaa
     3361 aaagactatg atgaattaaa agacaaatat atgcgtgcaa acgctgaatt tgaaaatatt
     3421 aaaaaaagaa tggaaaaaga aaagctaagt gctatggctt atgcaaatga aagctttgca
     3481 aaggatttgc ttgatgtttt agatgcttta gaagcagctg ttaatgttga atgccaagat
     3541 gaaattagct taaaaatcaa agaaggagtg caaaatactt tagatttatt tcttaagaaa
     3601 cttgaaaaac atggagtggc tcttatcaaa gatgaaaaag agtttgatcc taatttacac
     3661 gaagcaatgt ttcatgtaga tagtgaaaac catcaaagtg gtgaagtggt tcaagtgctt
     3721 caaaaaggtt ataaaatagc cgatcgcgtg atccgcccaa ccaaagttag tgtagcaaaa
     3781 taaattttaa taaaaggata aaaaatgagt aaagttatag gtatagattt aggaacaacc
     3841 aattcttgtg ttgctgtgta tgaacgcggc gagagcaaag taatcccaaa caaagaagga
     3901 aaaaacacaa ctccttcagt ggtagctttt acagataaag gcgaggtttt agtaggcgat
     3961 agtgcaaaac gccaagcggt aactaaccct gaaaaaacca tttattctat caaaagaatt
     4021 atgggtttaa tgatcaatga agatgcggct aaagaagcta aaaatagact tccttaccac
     4081 atcaccgaaa gaaatggtgc gtgcgcaata gaaatcgcag gtaaaattta caccccacaa
     4141 gaaatttcag caaaagtttt gatgaaatta aaagaagatg cagaagcttt tttgggtgaa
     4201 agtgttactg atgcggtgat tactgtgcct gcttatttta acgatgcaca aagaaaagcg
     4261 acaaaagaag cgggaacgat agcaggactt aatgtattaa gaattatcaa tgagcctact
     4321 tcagcagctc tagcttacgg acttgataaa aaagatagtg aaaaaattgt ggtttatgat
     4381 ctaggtgggg gaacttttga cgttactgtg cttgaaacgg gcgataatgt agtagaagtt
     4441 ttagcaacag gtggtaacgc tttcttaggt ggtgatgatt ttgataataa acttatagat
     4501 tttctagcta atgaatttaa agatgaaaca ggcatagatc ttaaaaatga tgttatggct
     4561 ttgcaacgct tgaaagaagc agcagaaaat gctaaaaaag aattaagttc agctaatgaa
     4621 actgaaatta atttaccatt tatcacagca gatgcaagtg ggccaaaaca tttggttaaa
     4681 aaacttacta gagctaaatt tgaaggtatg attgattctt tagtagctga aaccatcact
     4741 aaaatcaatg aagtagtaag cgatgcaggg cttaaaaaag atgagatcaa agaaatcgtt
     4801 atggtagggg gctctactcg tgttccttta gtgcaagaag aagtgaaaaa agcctttaat
     4861 aaagatctta ataagtctgt aaatcctgat gaagttgtgg ctatcggtgc ggcgattcaa
     4921 ggtgcggtta taaaaggtga tgtaaaagat gtgcttttac ttgatgttac tccgctctct
     4981 ttgggtatag aaactctagg cggggtaatg actaagatta tcgaaaaagg tacaactatt
     5041 ccaactaaaa aagagcaagt tttctcaacc gctgaagata atcaaagcgc tgtaactatc
     5101 aatgttttac aaggggaaag agaatttagt cgtgataata aatctttagg aaattttaat
     5161 cttgaaggaa ttccaccagc accacgcggt atgccacaaa tcgaagttac ttttgatatc
     5221 gatgcaaatg gtattttaac tgttagtgca aaagataaag caacaggtaa ggctcaagag
     5281 atcaaaatca caggttcaag cggacttagc gaggaagaga ttaataacat ggtaaaagat
     5341 gctgaacttc acaaagaaga agacaaaaaa cgcaaagaag ctgtagatgc tagaaatgca
     5401 gctgatagct tggcgcatca agtagaaaaa tctttaagtg agttgggtga aaaagttgcc
     5461 gctgctgata aagaaaatat tcaaaaagct cttgatgatt tgcgtgagac tttgaaaaat
     5521 caaaatgcaa gcaaagaaga gattgaaagc aaaatgaaag ctttaagcga agtttctcat
     5581 aagttagccg aaaatatgta taaaaaagat gagccaaaca cagcaaatga taaaaagaaa
     5641 aaagatgacg atgtaatcga cgctgaagtt gagtaatctt aaaatctcta ttcaagcctt
     5701 tttaaaaggc ttgaaaattt tttaaaattt taaagaaatg acaaaatctg taaaacataa
     5761 ttcttttatt agcttgctac ctaatttttc attgattttt taaccaattc tttttgaagt
     5821 tctaattcaa atcagacaat tcattttagt gtaagcaaac taaaaaatta acaataaaat
     5881 aaaatta
//
LOCUS       DARBAR010000103         5887 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.103, whole genome shotgun sequence.
ACCESSION   DARBAR010000103 DARBAR010000000
VERSION     DARBAR010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5887
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.103"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            42..737
                     /locus_tag="SB815_001459"
     CDS             42..737
                     /locus_tag="SB815_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEG0907176.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLNEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            734..1987
                     /locus_tag="SB815_001460"
     CDS             734..1987
                     /locus_tag="SB815_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEG0907177.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHIFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     EGKFESSKYEKEIATLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGR
                     FFKCKGKIVLNTPYEILTPLGDVIQTCDNELGKIYQKEGKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            1988..2482
                     /gene="purE"
                     /locus_tag="SB815_001461"
     CDS             1988..2482
                     /gene="purE"
                     /locus_tag="SB815_001461"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEG0907178.1"
                     /translation="MNFVSILMGSKSDYETMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGVKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMSGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2492..3028
                     /locus_tag="SB815_001462"
     CDS             2492..3028
                     /locus_tag="SB815_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HEG0907179.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3040..3903
                     /gene="glyQ"
                     /locus_tag="SB815_001463"
     CDS             3040..3903
                     /gene="glyQ"
                     /locus_tag="SB815_001463"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEG0907180.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            3890..4615
                     /locus_tag="SB815_001464"
     CDS             3890..4615
                     /locus_tag="SB815_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEG0907181.1"
                     /translation="MKLSEIYNFLDQLSPFNIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMIYKNISLISMHTNYDL
                     SHLNTYFTEEILGFKISFKDKFLIYVENSMSFEALCDWVKKKLNLQILRVSDCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQVIITVSKNPFQYF"
     gene            4625..5341
                     /locus_tag="SB815_001465"
     CDS             4625..5341
                     /locus_tag="SB815_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEG0907182.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINKTLKDAELKIEKINA
                     DLEKIDEEIKDIENQKIQNNAHISEFSAKIKDLSKKSGVVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVSEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            5338..>5887
                     /locus_tag="SB815_001466"
     CDS             5338..>5887
                     /locus_tag="SB815_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HEG0907183.1"
                     /translation="MIFFYYFLTWTAFLFCAVFILLLSFLKSKYKISLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKALVLKFDSRITTITQTGFECAKEFCKKVNYLAFENFL
                     PFWLKPCKVLVIFEAEYWLMLVFMARIYKAKIILLNARISDKSYHSYQRFSFFYKKIF
                     SYIDEVFAQSDLDKARLESLGAK"
BASE COUNT         2185 a          675 c         1116 g         1911 t
ORIGIN      
        1 tgagcaatta ttgaaaatct agatttaaaa aagggaaaaa aatgactcaa gaagagcttg
       61 atgctttgat gaatggtgat gttgatcttg attcagagac agaagcagag gtaaaaaccg
      121 aagaatcgaa taccgaagaa gatgctttga tgttagaaga tgtcaaaata gctgattaca
      181 aacctaatcc tagtgtagta tggccaccac ccccaccaaa tcaggagcat aaagttgtac
      241 atcagttaga tgatgttaca aaagatagcg agcttaaagc aacggaaatg atggataagc
      301 ttgaaagtat taataatttt tttgcggatt ctgaaagttt actcaaagaa ataaataaag
      361 caatagaaaa aaatattgat attttttcta aacttaatga aaaatttcct aatgtggaaa
      421 gtttcagtga agctttagaa ttaaacaatc aagctaaaaa aagttctaag gagattgtcg
      481 gaaatcttca aagcggacaa gatgaagtga tgatggcaat ggatgcaatg cagtatcaag
      541 atatacatcg tcaaaaaatc gaacgtgtta ttaatgtaat gcgtgcttta agccgttata
      601 tgagttcctt atttgaaggt aaaattgatg ataaaaaacg tgtaagttct gcagtgcata
      661 ttgaaggtga tagtactgct gatgttgtaa gtaatgatga tatagaagct ttaattgcaa
      721 gtttagggca aaaatgatca ttcctgaaat agtagctcct gcaggaaatt tcacaaaatt
      781 aaaaattgct ttagcttatg gcgcagatgc ggtttatgcg ggtgtgaata atttttcttt
      841 aagatcacgc actgcaagag aatttaatta tgaaagtttt gaagaagcta tcaaatatac
      901 tcatgagcgt ggtaagaaaa tttatgttac tttaaatggt tttcatttga gttctcaaat
      961 tgaaggttta aaaagacata ttttaaaatt gcgtgagatg aaacctgatg cttttattgt
     1021 agcttctgtt ggagctatgc gtcttgttaa agaacttgca cctgaaattt ctttacatgt
     1081 ttctactcag gcaaatattt taaattattt agatgctcaa gtttataagg atatgggtgc
     1141 taaaagggtt gtaattgcca gagaattagg gcttaaagac gctaaagctt taaaggaaaa
     1201 ttgcgatatt gaacttgaag cttttgtgca tggttctatg tgttttgctt attcagggcg
     1261 ttgtttaata agctctgtgc aaagtggaag aatgagcaat cgtggatctt gtgcaaatga
     1321 ttgtagattt aattatgagc tttatgctaa aaatccagaa aatggcactt tatttcgctt
     1381 agaagaagat gaaaatggta ctcatatttt taattctaaa gatttaaatc tttgttctta
     1441 tatagaaaaa atcatgcaag aaaattgtat cagtgctttt aaaatagaag ggcgtactaa
     1501 aagcgaatat tatgttgcgc ttacaacaag gacttataaa atggccatac aagatgcttt
     1561 agagggtaaa tttgagtcaa gtaagtatga aaaagagatt gctacactta aaaatcgtgg
     1621 ttttacagat ggctatcttg tttcgcgtcc tttagaaaaa accgacacac aaaatcataa
     1681 tacaagcata gaagaaggtt ctcatcaagt gcatgctata agcgaagatg gaagattttt
     1741 taaatgtaaa gggaaaatcg ttttaaacac gccttatgaa attttaaccc ctttaggcga
     1801 tgtgattcaa acttgcgata atgaactagg taaaatttat caaaaagagg gtaaatattt
     1861 tatagagttt aaaaaactta ttgctaaaaa caataaagaa tttagcgaaa ttcatagcgg
     1921 taatgaacat gaaatccaat taccaaataa aatcagtgca ttaagttttt taagaaagga
     1981 aatatagatg aattttgttt ctattttaat gggaagcaag agtgattatg agactatgaa
     2041 agaggctgct aaaactttag aaagttttgg tgtaaagtat gaacttatca tctcatcagc
     2101 tcatcgtagt ccaaaaagaa caaaagagta tattgcaaat gctgaagaaa aaggtgtgaa
     2161 ggtttttata gcagcagctg gaatggcagc gcatttagct ggagctgttg cagcttatac
     2221 aacaaaacct gttttaggag tgcctatgtc aggaagcaat cttgcaagta tggattcttt
     2281 gttttctacg gtgcaaatgc ctagtggaat tcctgtagga actttagcta ttggtaaggc
     2341 tggagcaatc aatgctgctt atttggctat gcaaatttta gctatttatg atgttgattt
     2401 agcacaaaag cttaaagaag atcgtcttga aaaagaaaaa aaacttgtat ctgattcaaa
     2461 agaagtagaa gttttattat aagggataaa aatgcaaacc tatcttgaac ttgaagaatt
     2521 ttgtaaactt gtgcatttaa atgaagatgt ggttaagggt atgatggcca atggggcttt
     2581 aaattttaaa gaagaagagg gtaaaattta catcgaagcc catcaaggta cttttagtgt
     2641 agtgcctagt tctgcaaaat ctcaaactgc aatggtaaat tcaatgactt tagcaggaga
     2701 aagttttgtt gaaaaaacaa taggaactat tttaaattta catgaaaaag ttttagatgc
     2761 taaagatgaa acacttgaag cattaaaaaa tgaaaataaa tttttaaaag atgcccttta
     2821 ttctatgcaa gagctttatg atgaagatag aaaaactata gaaaccttaa acaatgagtt
     2881 aaaacatgcg cgtgaagaga tagaatttct caagcgtaaa tataaattaa tgtggagtaa
     2941 aactgcagaa atttttggag ctaagacaga gcctgatttg gaaatgaata aaaatttaga
     3001 aaaacctatt gaaaatatgg aacaataaag agagatacaa tgactttttc acaaatgata
     3061 cttaatttac aaaattattg gcaagagcaa ggttgtgcga ttatgcaacc ttatgatatg
     3121 ccagcaggtg caggaacctt tcatccagca acttttttaa gaagtttagg aaaaaaacct
     3181 tgggcagctg cttatgtggc tccaagtaga aggcctactg atggacgtta tggtgaaaat
     3241 cctaatcgct taggtgctta ttatcaattt caagttttaa ttaaacctag tcctgataat
     3301 attcaagaat tatatcttaa aagtcttgaa aatttgggtt ttgatttaaa aagtcatgat
     3361 attcgttttg ttgaagataa ttgggagagt ccaagtttgg gtgcttgggg tttaggctgg
     3421 gaagtatggc ttgatggtat ggaagttact caatttactt attttcagca agttggcggt
     3481 atagcagtag atttagtaag tgctgaaatt acctatggtc ttgaaagaat agccatgtat
     3541 cttcaaaatg ttgataatgt ttatgatata gtttggagtg aatttaatgg agaaaaaatt
     3601 aaatacgcag atgtgcataa gcaaagtgaa tatgaattta gtaaatacaa ttttgaagta
     3661 agtgatgtta aaatcttaaa tgagcagttt gaaaattctt acaaagaatg taaaaatatt
     3721 ttagaacaag gactagcttt acctgcttat gattattgta tgcttgctgc acatactttt
     3781 aatcttttag atgcaagagg agcaatttct gtagcacaaa gacaagatta tatgttaaaa
     3841 attcgtgaac tttcaaaaaa ttgtgctgaa atttataaga aaaatttaaa tgaagctgag
     3901 tgaaatttat aattttttag atcaattaag tccctttaat atccaagaat catgggataa
     3961 tagtggaatt ttgcttggag atagggatag tgaaatttca actgtttatt taagcttaga
     4021 tattgatgaa aatatcatta aagaagcgag tgaaaattct ttaattatca cacaccatcc
     4081 tttgatattt aaaggtttaa aagatttata tgacaagact tatcctaggg cttttatcaa
     4141 agaaatgatt tataaaaata tttctttaat cagtatgcat acaaattacg atttaagtca
     4201 tttaaatact tattttacgg aagaaatttt aggttttaaa atttctttta aagataaatt
     4261 tttaatttat gtggaaaatt ctatgtcttt tgaagctttg tgtgactggg tgaaaaaaaa
     4321 gttaaatttg caaattttac gtgtaagtga ttgtggcaaa aaagacatta agcgcattgc
     4381 tatatgtact ggaagtggcg gggatttaat ttctaaagta gatgcggatt gttttttaag
     4441 tggagatttt aaatatcatc aagctttaga ggcgcttagt aatcaaatca gtcttattga
     4501 tttgggtcat tttgaaagtg agagatattt ttctcaatgt ttagcaaaag acttgaaaaa
     4561 tttgccgcta caagttataa taacagtttc aaaaaatcca tttcaatatt tttaaggaaa
     4621 ataaatgaat aaatatctcg aacaattagt gcttttatca aaaatagatc aagaaattga
     4681 tagttatgaa ccaaaaatag acagtattaa taagacttta aaagatgctg agttaaaaat
     4741 agaaaaaatc aacgcagatt tagaaaaaat cgatgaagaa atcaaagata tagaaaatca
     4801 aaaaatacaa aataatgctc atatttccga gttttcagca aaaattaaag atctttctaa
     4861 aaaaagtggt gtggtaaaaa cagaaaaaga agctaatgct ttaaaaattg aagaagatat
     4921 tgcaaaagag caattagacg ctgcaaatga tgagattgta agactagata aaattttaga
     4981 gaataaagaa acttataaaa aagaacttga agaagaaaaa atcaaacaag agcaaaatat
     5041 taacgagatt agagtaagca ttaaatctga aatggaagtt cttgaaaaag atagaatgag
     5101 tgtttatgat aaaaaaacta aacttgtgag tgagatgaat caaaaagttt taagttttta
     5161 tgagaaaatt cgcaaatggg cgaagaatac tgctgtagtt cctgttaaaa aacaagcatg
     5221 ctatggatgt tttatgaaaa tttacgataa gacttatctg tccgttgtaa aaggtgaaga
     5281 gattgtaact tgtcctcatt gcggaagaat tctttataaa gagcaagaag aacaaaattg
     5341 atcttttttt attatttttt aacttggacg gcatttttat tttgtgccgt ctttattctt
     5401 ttactttctt ttttaaaatc caaatacaaa attagtttaa aatctcgatt ttttctttat
     5461 aaaaatttac atcaagaaaa agctgatgta cattttcatg cttgttctta cggggaggta
     5521 agaagtatta aagctttggt tttgaaattt gattcaagaa taactactat tactcaaaca
     5581 ggttttgaat gtgcaaaaga attttgtaaa aaggtaaatt atcttgcttt tgaaaatttt
     5641 ttgccttttt ggcttaagcc ttgtaaggtt ttggtaattt ttgaagcaga atattggctt
     5701 atgcttgttt ttatggcacg tatttataag gctaagatta ttttgcttaa tgcgagaata
     5761 tctgataagt cttatcattc ttatcaaaga ttttcttttt tttataaaaa aattttttct
     5821 tatattgatg aagtttttgc tcaaagtgat ttagataaag caagacttga aagtttggga
     5881 gctaaaa
//
LOCUS       DARBAR010000104         5750 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.104, whole genome shotgun sequence.
ACCESSION   DARBAR010000104 DARBAR010000000
VERSION     DARBAR010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5750)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5750)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5750
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.104"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..616
                     /locus_tag="SB815_001467"
     CDS             <1..616
                     /locus_tag="SB815_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907184.1"
                     /translation="INAKALSLGVSDSSPWDLEMAQRGFKVIEYDASIEKCPYDHENI
                     VFHKKFIGNVNNENTITLVQALKDNNLDENKPNILQCDIENCEWDMLENIDISILNKY
                     FSQVIFEFHGCNPEEQDGVEKRISLLKKLNEYFVPMHTHFHNHGKIFYSQGLFFSTTL
                     EVSYLRKNLINLDIMKYRDVAGGFKNLDFPWISNPEIPIRFRGY"
     gene            616..1656
                     /locus_tag="SB815_001468"
     CDS             616..1656
                     /locus_tag="SB815_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase"
                     /protein_id="HEG0907185.1"
                     /translation="MQTNSKIYIAGHKGTAGTALVENLQKRGFNNLVLKTRQELDLVN
                     QQAVAKFFKEEKPEYVFLTAVLPCGAANVAQRADFIYENLMIQNNVIHNSFLNNVKKL
                     VFFGSGYMYPENAKNPLKEEYLFQGDLEYGAYSFGAAKIAGAIMCESYNIQYGTNFIT
                     LVLNNLYGTKANFDFGKSRVLPALLRKFHLAKLLSEGNITQILQDLKMNNFEEAKEYL
                     HNFGISKKSVEIWGTGKVRREFIHSDDLADVAIYTMQNIDFKDLIKDRKSKNTHINIG
                     TGIDYSIKEVALMVKNIVGFSGELVFNTSRPDSTMDRLMDCSKIHSLGWKHKIELKDG
                     IKMMYEWYKTQN"
     gene            1680..2621
                     /locus_tag="SB815_001469"
     CDS             1680..2621
                     /locus_tag="SB815_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase"
                     /protein_id="HEG0907186.1"
                     /translation="MSKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLS
                     CFHNKNFTFINGDAMDENLIRQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYEAVK
                     MISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGN
                     CVTFRLATVFGISPRMRLDLLVNDFTYRAYRDKFIVLFEEHFRRNYIHVRDVVKGFIH
                     GIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYIPDFYIHSANIGEDPDKRDYLVSN
                     TKLEATGWKPDNTLEDGIKELLRAFKMMKVNRFANFN"
     gene            2640..3491
                     /locus_tag="SB815_001470"
     CDS             2640..3491
                     /locus_tag="SB815_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEG0907187.1"
                     /translation="MKKEQLEVLKEALNGLIYQIDNHQQARKPIADVERIISELQVLN
                     HWNKQENVYNALHLIQGAIADPQGLGRLNLLLDNARIPKQYYDIFYKMLYVDKYGGGD
                     GYRPVCIDCGGHAGLITDIILHCGGQSYIFEPNIYLNYFLRKKYENNINVKLFQKAVS
                     DRNYETDFIMFGNRILSQGNRIVESVQDSQTEKTYKVQVIDLCEFIENEILTQHKRIY
                     FLKLDIEGMEFEIMKKIIEKKIYKKIDYIACETHEYMFDDSEKKIGELKQLINKCNIQ
                     NILLDWI"
     gene            3511..4530
                     /gene="hddA"
                     /locus_tag="SB815_001471"
     CDS             3511..4530
                     /gene="hddA"
                     /locus_tag="SB815_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HEG0907188.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCT
                     LIKREDGKIIFDSPDTNSYCEYESKEFLGNDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYNNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFRADFGTLAQILGKSWRSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALRKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            4518..5123
                     /gene="gmhA2"
                     /locus_tag="SB815_001472"
     CDS             4518..5123
                     /gene="gmhA2"
                     /locus_tag="SB815_001472"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG0907189.1"
                     /translation="MENLNSYIKGHFADSILVKEQILKDENLITLIKNASLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALEFCKQKEIISIGLSGASGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            5111..>5750
                     /gene="hddC"
                     /locus_tag="SB815_001473"
     CDS             5111..>5750
                     /gene="hddC"
                     /locus_tag="SB815_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 1-phosphate
                     guanosyltransferase"
                     /protein_id="HEG0907190.1"
                     /translation="MQAIILCGGLGTRLKSIIKDIPKPMAPINDKPFLEFIFEYLKKQ
                     GIKEVILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKETLKFVKNEAYVL
                     NGDTFFDIDLSKLKLNESKICLALKQMNDFDRYGTVNVDEQDLVISFEEKVFKKQGLI
                     NGGIYLLTKDIFNDFALQEKFSFEEFLQENYKKLKARACIFDDYFIDIGVPED"
BASE COUNT         2124 a          640 c         1104 g         1882 t
ORIGIN      
        1 tattaatgca aaagctcttt ctttgggtgt ttcggatagt tctccttggg atttagaaat
       61 ggctcagagg ggatttaagg tgatagaata tgatgctagt atagaaaaat gtccttatga
      121 ccatgaaaat attgtttttc ataaaaaatt tataggtaat gtaaataatg agaatacaat
      181 tactttggta caagctttaa aagataataa tttagatgag aacaagccaa atattttgca
      241 atgtgatatt gaaaattgcg aatgggatat gcttgaaaat attgatataa gtattttaaa
      301 taaatatttc tcacaagtta tatttgaatt tcatgggtgc aatcctgagg agcaagatgg
      361 ggtggaaaaa agaataagtt tgctaaaaaa acttaatgaa tattttgttc caatgcatac
      421 acattttcac aaccatggga aaatttttta ttctcaagga ttatttttta gtaccacttt
      481 ggaggttagt tatttaagaa aaaatttgat taatcttgat attatgaaat atagagatgt
      541 cgcaggggga tttaaaaatt tagattttcc ttggatttca aatccagaaa ttccaatacg
      601 atttagaggt tattgatgca aacaaattca aaaatatata tagcggggca caaaggaacc
      661 gcaggtacag cattggtaga aaacttacaa aaaagaggat ttaataatct tgttttaaaa
      721 acaaggcaag agcttgattt ggttaatcag caagcggttg ctaaattttt taaagaagaa
      781 aagccagaat atgttttttt gactgcagtc ttaccttgtg gtgctgcaaa tgtcgctcaa
      841 agggctgatt ttatttatga aaatttgatg attcaaaaca atgttattca caattcattt
      901 cttaataatg ttaaaaaatt ggtatttttt ggttctgggt atatgtatcc tgagaatgct
      961 aaaaacccat tgaaagagga atatttattt caaggtgatt tagaatatgg cgcttattct
     1021 tttggtgcag ccaaaatagc tggagctata atgtgtgaaa gttataatat tcaatatggt
     1081 actaatttca ttactcttgt tttaaataat ctttacggaa ctaaagcaaa ttttgatttt
     1141 ggaaaatcaa gagtcttacc cgcattgctt agaaaatttc atttagcaaa attgttaagc
     1201 gagggtaata taactcaaat ccttcaagat ttgaaaatga ataattttga agaagcaaaa
     1261 gaatatttgc ataattttgg aattagtaaa aaaagtgtag aaatttgggg cactggaaaa
     1321 gttaggagag aatttattca tagtgacgat ctagccgatg tagctatcta tacgatgcaa
     1381 aatattgatt ttaaagatct tattaaagat agaaaaagta aaaataccca tattaatata
     1441 gggacaggta ttgactattc aatcaaagaa gttgctttga tggtaaaaaa tatagttggg
     1501 tttagcggag aactagtttt caatacttct agaccggata gcacaatgga tagacttatg
     1561 gattgctcaa aaattcattc tttaggttgg aagcataaaa ttgaacttaa agatggtatt
     1621 aaaatgatgt atgaatggta taaaacacaa aattgatttt caaagacgaa aggaaaagta
     1681 tgtcaaaaaa agttttaatt acaggtggtg caggttatat aggttcggtt ttaacgccga
     1741 ttttacttga aaaaggttat gaagtttgtg tgattgataa tttgatgttt gatcaaattt
     1801 ctcttttatc ttgttttcat aataaaaatt ttacttttat aaatggtgat gctatggatg
     1861 aaaatcttat taggcaagag gtagcaaaag ctgatattat tattcctcta gctgctttag
     1921 ttggagctcc actttgtaaa agaaatccaa aattagctaa aatgatcaat tatgaagccg
     1981 taaaaatgat aagtgatttt gcaagtcctt ctcaaatatt tatttatccc aatacaaaca
     2041 gcggttatgg tataggagaa aaagatgcaa tgtgtactga agaatctccc ttgcgtccta
     2101 tctcagaata tgggatcgat aaagtgcatg cggagcaata tttgctcgat aaaggaaatt
     2161 gtgtgacttt tcgtttagct actgtttttg gaatttcacc tagaatgaga cttgatttac
     2221 ttgttaatga ttttacttat cgtgcatata gagataaatt tatagtgctt tttgaagagc
     2281 attttagacg caattatatt catgttcgcg atgtggttaa aggatttatt catggaattg
     2341 agaattatga taagatgaag ggtcaggctt ataacatggg attaagttct gcaaatttga
     2401 ccaaaagaca gcttgctgaa acaattaaaa agtatattcc tgatttttat atccattcag
     2461 ccaacatagg tgaagatcca gataaaagag attatttggt ttcaaatact aaattagagg
     2521 ctacaggttg gaaaccagat aatactttag aagatggtat taaagagctt ttaagagcgt
     2581 ttaaaatgat gaaagttaat cgctttgcaa attttaatta aaattaaagg agataaataa
     2641 tgaaaaaaga acaattggaa gtattaaaag aggctctaaa tggcttgatt tatcaaattg
     2701 ataatcatca gcaagctagg aaaccaatag ctgatgtaga aaggataatt tcagagttgc
     2761 aagtattaaa ccattggaat aagcaagaaa atgtttataa tgcattgcat ttaattcagg
     2821 gtgctatagc cgatccacaa gggcttggta gattaaattt gttattagat aatgccagaa
     2881 ttccaaaaca atattatgat attttttaca agatgcttta tgtcgataaa tatggggggg
     2941 gggatggata tcgtccagta tgtattgatt gtggtggaca tgcaggctta attactgata
     3001 ttattttaca ttgtggcggg caaagttata tctttgagcc aaatatttat ttaaattatt
     3061 ttttaagaaa aaaatatgaa aataatataa atgtaaaact ttttcaaaaa gcagtatcgg
     3121 acagaaatta tgaaacagat tttattatgt ttggaaatag gatactatct caaggcaatc
     3181 gtatagttga aagtgtacaa gacagtcaga cggaaaaaac atataaagtt caagtaattg
     3241 atttatgcga gtttatcgaa aatgaaattt taacacaaca taaaaggatt tattttctaa
     3301 aacttgatat tgaaggaatg gagtttgaga taatgaaaaa aattattgaa aaaaaaatat
     3361 ataaaaaaat tgattatatt gcttgtgaaa cacatgaata tatgtttgat gattcagaga
     3421 aaaagatagg ggagttaaag caattgatta ataaatgtaa tattcaaaat attttacttg
     3481 attggatatg ataaataaat taggagattt atgaaaacca tacgcacaca aactcctctt
     3541 cgtctcggtc tagcaggtgg tgggactgat ataaatttat attgtgataa atatacaggt
     3601 tatgttttaa atgcgactat atctttatac atacattgta ctttgatcaa aagagaagat
     3661 ggaaaaatca tttttgattc tcctgataca aattcttact gtgagtacga aagtaaagaa
     3721 ttcttaggaa atgatggaaa attagatatt tttaaaagta tttataatcg cattgtaaaa
     3781 gattttacaa aaaaaccttt gagtttttct ttgcatacct attcggatgt accaagtggt
     3841 agtggcttgg gcggaagctc aactttggtt gtaggggtta taaaagcctt tgcagaatgg
     3901 cttaatctac ctttaggaga atatgaaatc gctaaacttg cttacgagat agaaagagaa
     3961 gatttaggca tagtaggtgg agcacaagat caatacgccg caacttttgg tggttttaat
     4021 tttatggaat tttataacaa taaaagagtc attgttaatc ctttgcgtat taaaaactgg
     4081 atagctagtg agcttgaagc tagaactgtg ctttatttta caaatatcac aagagaagca
     4141 aaagatatag aagagcataa aaaaggaaag cttggagatg aaaaatcttt agaagccatg
     4201 cacgcgataa aacaagatgc tataaagatg aaagaagctt tatttagagc cgattttggt
     4261 actttggcgc aaattttagg aaaatcttgg cggtcaaaaa aaatcatttc agaaatcgtt
     4321 agtaatgatg agcttgaaag aatttataaa cttgctatag ataacggagc ctatagtggc
     4381 aaaaccagcg gagcaggagc tggtggattt atgtttttct tcgtagatcc tactaaaaaa
     4441 tacaacttaa tcaaagcttt aagaaaagag caaggttatg tgcaagattt ttcatttaca
     4501 aaagaggggg ttaaatcatg gagaatttaa attcctatat aaaaggacat tttgcagatt
     4561 ctattttagt aaaagaacaa attttaaaag atgagaattt gataactctt attaaaaatg
     4621 cttcattaga agtcataaaa gcttataaaa atggtaacaa aactttatta gcaggaaatg
     4681 gtggcagtgc tgcagatgca cagcatattg caggggaatt tgtaagtagg ttttattttg
     4741 atagacccgg tatcgcaagt attgcactta ctacagatac tagcatatta acagctattg
     4801 gtaatgacta tggttatgaa aatttgtttg ctagacaagt gcaagctcaa ggtgttaagg
     4861 gagatgtttt tataggcatt tcaacaagtg gaaatagtaa aaatatctta aaagctttag
     4921 agttttgcaa acaaaaagaa atcataagta taggcttaag tggagctagt ggcggggcta
     4981 tgaatgaact ttgtgattat tgtataaaag tgccttcaac ttgcacgcca agaattcaag
     5041 aagcgcatat tttaatagga catattattt gtgctattgt cgaagaagag ctttttggta
     5101 aaggtttttc ttgcaagcaa taatactttg tggcggctta ggaacaagac ttaaaagtat
     5161 tataaaagac attccaaagc ctatggcacc gataaatgat aagccttttt tagaatttat
     5221 ttttgagtat cttaaaaagc aaggtataaa agaagtaatt ttagcagtat catacaaata
     5281 tgaagtgata aaagagtatt ttaaagatga gtttttaggt ataaaaataa aatacagcat
     5341 cgaaaaagag cctctaggaa caggcggagc cataaaagag actttgaaat ttgtaaaaaa
     5401 tgaagcttat gttttaaatg gtgatacttt ttttgacata gatttaagta aattaaagct
     5461 aaatgaaagt aaaatttgtc ttgctttaaa acaaatgaat gattttgata gatacggcac
     5521 agtaaatgtt gatgaacaag atcttgtaat ttcttttgag gaaaaggtat ttaaaaagca
     5581 aggtttaatc aatggtggaa tttatctttt aactaaagat atttttaatg attttgcttt
     5641 gcaggaaaaa ttttcttttg aagagttttt acaagaaaat tataaaaaac taaaggctag
     5701 ggcttgtatt tttgatgatt attttataga tattggtgtg cctgaggatt
//
LOCUS       DARBAR010000105         5730 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.105, whole genome shotgun sequence.
ACCESSION   DARBAR010000105 DARBAR010000000
VERSION     DARBAR010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5730)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5730)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5730
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.105"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            70..3810
                     /locus_tag="SB815_001474"
     CDS             70..3810
                     /locus_tag="SB815_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Eco57I restriction-modification methylase
                     domain-containing protein"
                     /protein_id="HEG0907191.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIMQNEFDIFNKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKSEIDLSISKDEFSKDLEVLIEAKKPN
                     SKEFITHTKVNSKALHETILYYFRNREYSFSLKFIIITDFYKFYIFKISEFEELFYKN
                     PSFKKLFEEFCNPNSLFKGNTEEFYKEVAKLIENSKENLKGFLIDLTFLKDKQKSNFK
                     NLASIYKTFHRDFLLNEFNPNDANSLNNAFYKELLYILGLCESKQNSKLIIAKSEESK
                     EEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFNDDKNLKFLNFK
                     KIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTLEISSLSNDLK
                     LFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDEQSEILSQKELISSSVLGN
                     VFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDAKNINELRKSLRKED
                     KKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFYLEVQNDEILITG
                     RKGEFIEYKRPSTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSCEITKLRLWIEL
                     LKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLSHYPNIKERINKYKR
                     IVKDYKEGFYTDKSHINQEIKNLKISFKNFCFADKFKKEMKGFNDKCEKYSKKYGNFL
                     AINDENLKFFVSANLTLFDFDEKEATKEFANLKKEYDNIFNLESNHPFEWRFEFPEIL
                     DDDGNFKGFDLIIGNPPYIRQEELKELKPHLAKNYKVYKGTSDIYTYFYELGFNVLKE
                     NGILSFITSNKYTRAGYGEALREFLLKNTCILKYIDLNGIKVFDSATVDTSILSFEKI
                     KIKENTFKYLSLNNELLKNYDFEISAIKEFLNISQNSLSKESFAFNDESTNALKTKIE
                     KLGTPLKDWHGLNINYGIKTGLNEAFIITTEKKDEILANCKDEDEKERTAKLIRKMLR
                     GRDIKRYSYEWAGLWVINTHNGYKSKNGEKIKAINIEHYPSLKKHFDEFYLQLEKRSD
                     KGLTPYNLRNCAYIEEFEKEKIVYPETTQGAYFVYDNKGIFLEKTAFFIVCENLKYLL
                     GLLSSNLITYYYKNFSQGCKLGIKGYQYNKHALENLPLPKINSKNEKLANELISLVDE
                     ILKAKEQDKNANTQELENKINSLVYKLYNLTEEEIKIIENKE"
     gene            3813..>5730
                     /locus_tag="SB815_001475"
     CDS             3813..>5730
                     /locus_tag="SB815_001475"
                     /inference="COORDINATES: protein motif:HMM:NF024565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG0907192.1"
                     /translation="MIKKIKQVNYKSFNNYNSSGLEFNRINILYGRNGQGKSSLVNFI
                     KDNIENNNLDIFETSSNGFSLFFYDTDYKNSLFYSNDKFKTFYIADDIENIILEKNKI
                     CKKIKKLKEFKNKIEEKINTANKNKKDLKSTIAKNTREVLSKIDSNKYNTPQSYQSTH
                     IDDGYLSSEKISLFEVLSYDEFEKIKSMKKNLNYEIIKEFNFDKFKQIENGVKKIDEM
                     LKQTPENNAIDRFKQDNDLENLARLAFDIKNKSEMYKDKCPLCGQNILGVKLWEKLEK
                     HFNEEYKQFIERLGKAKNFFENSITELGNYTKWLNEHFIKTKLLIDDDIDKKRQEYLL
                     FIEESVKEINNIINHIELKKQNPNKNDIDIDCDLNLFQRILNDDIQNLIKQHNRKQQT
                     YLKDIDENIEKIKKHFIAKEKDNVALYNGLINFYNKIKEKINCVLEKRNKHIVDIDAK
                     LKEMDQSFQNLNKDMEEWFFNDICFEKIGDAYYKIQRLNFNNKWFDCDKGLSEGEKTI
                     VSIIYFTNHFLSKIKEIKECPLVFLDDPINSLDNSNRDKIINYISSKLLKQNRGQFFI
                     ATHIDEVCDKFNKKNSDTQSIFEIKKYANQSEIEKLAGFKLNNDFKTTHLRLCEYLKF
                     GKYEDAFDISGDVRF"
BASE COUNT         2429 a          710 c          848 g         1743 t
ORIGIN      
        1 aattcttaaa aaattttata taaaagtaaa atttgataaa atacaaaata ttttttataa
       61 aggttaaaaa tgcatttcac tttgctaaat gaaaaagatt ttttcaaccc atactaccgc
      121 aaaaagcaaa tcatgcaaaa tgaatttgat atatttaaca aggctttaat gcaatatcta
      181 gaaagacttg aaagttcgca aagtgaaaat gaagattatc ttgtagctaa tgcacttagt
      241 ccatttttaa ccatgttaaa tttcaaaact cacatcaaaa ccaagcaaaa aggcaaaagt
      301 gagattgact tatccatctc taaagatgag tttagtaaag acttagaagt tcttattgag
      361 gctaaaaagc caaattcaaa agaatttatc actcatacaa aggtaaattc taaagcctta
      421 cacgagacta ttttatatta ttttagaaat agagagtata gttttagctt aaaatttatt
      481 atcatcacag atttttataa attttacatt tttaaaatta gtgagtttga agagcttttt
      541 tataaaaatc caagttttaa aaaacttttt gaagaatttt gtaatccaaa ttcacttttc
      601 aaaggtaata ctgaagaatt ctataaagaa gtagccaaac tcatagaaaa ttccaaagaa
      661 aacttaaaag gctttttgat tgacttgaca tttttaaaag acaaacaaaa atcaaatttt
      721 aaaaacctag caagtattta taaaactttt catagagact ttttgctaaa tgagtttaac
      781 cccaacgatg caaattcact caacaatgct ttttacaaag agcttttata tatcttaggg
      841 ctttgtgaga gcaaacaaaa ctcaaaactc atcatcgcaa aaagtgaaga aagcaaagaa
      901 gagcaaggca ctttctacac cgctataaac tctaagctta aagaagaaaa ttttgaaacc
      961 atcttaaaac ttttgatctt atggcttaat cgcattttgt ttttaaagct tatagagtca
     1021 aatttggtgc gttttaatga tgataaaaat ttgaaatttt taaatttcaa aaaaatccct
     1081 gattttgaca agcttagcga acttttcttt gaagtcttag ccaaagaaaa aagcacgaga
     1141 aagaaaagcg aatttgctta tctgccttat ctaaattctt ctttgtttga aaaacaaagc
     1201 atagaaaaca cacttgaaat ttcaagctta agcaatgact taaagctttt ttactataaa
     1261 aataccgtgc taaaagatga taaatgcaag gctaaaaaag gacaagtggg gcttttggaa
     1321 tacttgtttg aatttttgga tagctttgat tttggtagtg atgagcaaag cgaaatttta
     1381 agccaaaaag aactcataag ctcaagcgtt ttgggaaatg tgtttgaaaa actcaatggc
     1441 tacaaagaag ggagctttta cacgccaagc tttatcactt cttatatgtg taaagaaagc
     1501 atcacaaaag ttgtgcttga taaattcaac gctcaatttg atcttgatgc taaaaatata
     1561 aacgaactaa gaaagtcttt aagaaaagaa gacaaaaaag cacaaaaaga gcttttaaat
     1621 tccataaaaa tttgcgatcc tgcggtggga agtgggcatt ttttggtttc tgctttaaat
     1681 gttatgctga gtatctatga tgagctaaat ctttttgatg aagagtttta cctagaagtg
     1741 caaaacgatg aaattctcat cacgggtaga aaaggcgagt ttatagagta taaacgccca
     1801 agcacgccta aagataaagc ccatcttatc cagcaagaac tttttcatac caaaaaagac
     1861 atcatagaaa acaacctttt tggagtcgat atcaacccta actcatgcga gatcaccaag
     1921 ctaaggcttt ggatagagct tttaaaacat agcttttatc aaagctttga tgatgagaat
     1981 tatcacgatc ttaaaaccct gccaaacatc gatataaaca taaaatgcgg aaattctttg
     2041 gtatcttact ttgaaacagg caaaagtcta agccactacc ctaacatcaa agaacgcatc
     2101 aacaaataca aacgcatagt aaaagactat aaagaaggtt tttacacaga taaaagtcat
     2161 atcaaccaag agataaaaaa tctcaaaatt tcttttaaaa atttctgctt tgcagataaa
     2221 tttaaaaaag aaatgaaagg ctttaatgat aaatgcgaaa aatactctaa aaaatacgga
     2281 aatttcttag ctataaatga tgaaaatttg aaattctttg ttagtgcgaa tttgactctt
     2341 tttgattttg atgaaaaaga agccacaaaa gaatttgcaa atcttaaaaa agaatacgac
     2401 aatatcttca acctagaaag caatcatcct tttgaatggc gttttgaatt ccctgaaatt
     2461 ttggacgatg atggaaattt caaaggcttt gatctcatca tcggcaatcc accttatata
     2521 agacaagagg agcttaaaga actcaagccc catttagcta aaaattataa ggtttataaa
     2581 ggcacgagcg atatttatac ttatttttac gagctaggct ttaatgtctt aaaagaaaat
     2641 ggaattttat ctttcatcac ttcaaacaaa tacacccgtg caggatatgg ggaagctttg
     2701 cgtgaatttt tgctaaaaaa tacttgcatt ttaaaataca tcgacttaaa cggcataaaa
     2761 gttttcgata gtgctacggt agatacttcc atacttagct ttgaaaaaat aaaaatcaaa
     2821 gaaaatactt ttaaatatct aagcttaaac aacgagcttt taaaaaacta tgactttgaa
     2881 atttcagcca taaaagaatt tttaaatatc tctcaaaact cacttagcaa agaaagcttt
     2941 gctttcaatg atgaaagcac aaatgcacta aaaactaaga tagaaaaact cggcacaccg
     3001 cttaaagatt ggcacggatt aaatataaat tatggcatta aaacaggttt aaacgaagcc
     3061 ttcatcatca ctaccgagaa aaaagatgaa attttagcta attgcaaaga cgaagatgaa
     3121 aaagaacgca ccgcaaaact catacgcaaa atgctacgcg gacgcgatat aaaaagatac
     3181 agctatgaat gggcgggact ttgggtgata aatactcaca atggttacaa aagcaaaaat
     3241 ggagaaaaaa ttaaagcgat aaatatagag cattacccta gtttaaaaaa gcattttgat
     3301 gaattttatc tacaactaga aaaaagatcc gacaaaggct tgacccctta taatcttaga
     3361 aattgtgcgt atattgaaga atttgaaaaa gaaaagatag tgtatcctga aacaactcaa
     3421 ggggcatatt ttgtctatga taataaagga attttcttag aaaaaacagc tttttttata
     3481 gtctgtgaaa atttgaaata tttattagga ctattatcat caaatttaat tacatattat
     3541 tataaaaatt tttctcaagg ttgtaaatta ggaataaaag gctatcaata caataaacat
     3601 gcattagaaa atttaccatt gccaaagata aattctaaaa atgaaaaact agcaaatgag
     3661 cttataagct tagtcgatga aattttaaaa gccaaagaac aagacaaaaa cgcaaatacc
     3721 caagaactag aaaataaaat caattctttg gtttataaac tttacaatct caccgaagaa
     3781 gaaataaaaa tcatagaaaa caaggagtga aaatgattaa aaaaataaaa caagttaatt
     3841 ataaaagttt taataattat aattcaagtg gtttggaatt taatcgtatt aatattttgt
     3901 atgggagaaa tggtcaaggt aaaagttcat tggtaaattt cattaaagat aatattgaaa
     3961 ataataattt agatattttt gaaacaagct ctaacggttt tagtttattt ttttatgata
     4021 cagattataa aaatagctta ttttatagca atgataaatt taagacattt tatatagctg
     4081 atgatataga aaatataatt ctagaaaaaa ataagatatg caaaaaaata aaaaaactta
     4141 aagaattcaa aaataaaata gaagaaaaaa taaatactgc aaataaaaac aaaaaggatc
     4201 ttaaaagcac aatagcaaaa aatactagag aagttctaag caaaattgat agtaataaat
     4261 ataatactcc acaatcttat caatctacac atatagatga tggttactta tcaagtgaaa
     4321 aaatatcatt atttgaggta ttgtcgtatg atgaatttga aaaaattaaa tcaatgaaga
     4381 aaaatttaaa ttatgaaatt atcaaagagt ttaattttga taaatttaaa caaatagaaa
     4441 atggtgtaaa aaaaattgat gaaatgctta aacaaacccc agaaaataat gcaatagata
     4501 gatttaagca agataatgat ttggaaaatt tggcaagatt agcatttgat ataaaaaata
     4561 agtcagagat gtataaagat aaatgtccat tatgtgggca aaatatatta ggtgttaaat
     4621 tatgggaaaa attagaaaaa cattttaatg aagaatataa acagtttatt gaaagattgg
     4681 gtaaagctaa aaattttttt gaaaattcta taacagaatt gggtaattat acaaaatggc
     4741 ttaatgagca ttttattaag actaaattac ttattgatga tgatattgat aaaaaaagac
     4801 aagaatattt attatttatt gaagaatctg taaaagaaat aaataatata ataaatcata
     4861 tagaacttaa gaaacaaaat ccaaacaaga atgatataga tattgattgc gatttaaatt
     4921 tatttcaaag aattttaaac gatgatattc aaaacttaat taaacagcac aataggaagc
     4981 aacaaacata tcttaaagat atagatgaaa atattgaaaa gataaaaaag cattttatag
     5041 ctaaagagaa agataatgtt gcattatata atggtttaat taatttttat aataaaatca
     5101 aagaaaaaat taattgtgta ttagaaaaaa gaaataagca tatagtagat atagatgcaa
     5161 aacttaaaga aatggatcaa agttttcaaa atcttaataa agatatggaa gaatggtttt
     5221 tcaatgatat ttgctttgag aagatagggg acgcgtatta taaaatacaa aggttaaatt
     5281 ttaataataa atggtttgat tgtgataagg ggttaagcga aggtgagaag actatagttt
     5341 ctataatata ttttacaaat cattttttat caaaaattaa agaaataaaa gaatgccctt
     5401 tggttttttt agatgatcct ataaatagtt tagacaattc aaatcgagat aaaattatta
     5461 attatatatc cagtaaactt ttgaaacaaa atcgaggcca gttttttata gctacacata
     5521 ttgatgaagt atgtgataaa tttaataaaa aaaatagtga tacacaatca atttttgaaa
     5581 taaaaaaata tgccaatcag tctgaaattg aaaaattggc aggttttaaa ttgaataatg
     5641 attttaaaac aactcatttg agattatgtg aatatttaaa atttgggaaa tatgaagatg
     5701 catttgatat cagtggcgat gttagattta
//
LOCUS       DARBAR010000106         5662 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.106, whole genome shotgun sequence.
ACCESSION   DARBAR010000106 DARBAR010000000
VERSION     DARBAR010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5662)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5662)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5662
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.106"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(48..1316)
                     /locus_tag="SB815_001476"
     CDS             complement(48..1316)
                     /locus_tag="SB815_001476"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEG0907193.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELRPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHVHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(1431..2606)
                     /locus_tag="SB815_001477"
     CDS             complement(1431..2606)
                     /locus_tag="SB815_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG0907194.1"
                     /translation="MHQSVIDTQALIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAHFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEIAKKSFFYIFL
                     LYALSSFIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAIIVMSMIKFLSNSKK"
     gene            complement(2587..3423)
                     /locus_tag="SB815_001478"
     CDS             complement(2587..3423)
                     /locus_tag="SB815_001478"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HEG0907195.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLSADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLRERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(3425..5527)
                     /gene="topA"
                     /locus_tag="SB815_001479"
     CDS             complement(3425..5527)
                     /gene="topA"
                     /locus_tag="SB815_001479"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEG0907196.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRVVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
BASE COUNT         1843 a         1059 c          802 g         1958 t
ORIGIN      
        1 tatacaagaa gattttgtgg aatttttaat ttccacaaaa attttaatta tattttacta
       61 gtttcaccca aataaagttg tcttggacgg actattttaa gactttcttg ctctttttgt
      121 tctatccact gagctatcca tcctggggtg cgccctataa caaataaagt agcaaacatt
      181 tcatttggaa tacctaaggc ttttaaaata agtccactat gaaaatcaac attcggatat
      241 agccctcttt gaacaaaata atcatcactt aaagcaatct cttctatacg cgttgctact
      301 ttaataagat tggtatcaat acccaactca tcaataagtt gatcacgaag ttttttaagt
      361 acttttgctc taggatcaaa atttttataa accctatgcc caaagcccat caagcggaaa
      421 ggatcgtttt tatccttagc tcttttgatg aattcatcta ccctatcaac actacctatt
      481 tgctcaagca ttctaataac accttcatta gctccaccat gtgcatgacc ccaaagcgca
      541 ccaatacctg ctgctataca ggcataagga tgaacatgag ttgaacccac agcacgaact
      601 gttgaagttg aagcattttg ctcatgatct gcatgaagca taaaaactgt atcaagtgct
      661 tttacttcta taggtctaag ctctacatga tcgtaaggat aggttcttaa catatataag
      721 aaattttctg taaaaccacg atctaaattt ggataagcca taggaaagcc gtgtttatat
      781 ctataagcgg tggccactat agtagggatt ttagctacta ttctagctgc catttccata
      841 tattcttctt ttacattcat gtttaaatga tcaggataaa aagcactaag cgatgaaaca
      901 gcaccttgta aaactgccat aggatgagca ttatcaggga aagaatcaaa aagacggtgc
      961 ataccttcat ggataaaaga acgttttttc atttcataac gaaacgcttc aagacgcgta
     1021 gcatcaggta attctttata aagtaaaaga tgaaccacat ctaaataaag tttgttttca
     1081 gcaagccact ctataggata gccacggtgc attaaaattc cattttctcc atcaatataa
     1141 gtgatttttg atttacaagt agctgtagaa gtcaagccct catcataaga aaacattcct
     1201 gtttgtttat aaaaacttga catatctaca acgcttggcc cagttgtacc gtcatatata
     1261 ggaaattcat agctttttcc atttctatta tcggttatag taacggaatt tgacattttc
     1321 gctcctttta ttgttacttt tattaattct aacaaaaaag gacgattatg agttttttta
     1381 ttattaaatt tttaagattt tgtttgcttt tttgagtaaa aaagtaactt tcatttttta
     1441 gaattagaaa gaaatttaat catactcata acaataatag cctcaaataa cgctgttaaa
     1501 ataagcgctg aataaagctt ctcatcaata accttgcccg aataacccag agtagctgtt
     1561 gctataagca aggttaaagg catagaatga ctaagaccaa ataaaatcat atttttaaaa
     1621 ccaattcttt ttaaaaaaac acttgcacat aaaattctta aacccaccat aacaaacata
     1681 agtaaaaatg cttgtaaaac gattttataa tctaaaatca ttttaagatc aaaggttgaa
     1741 cctatatgga taaaaaaaat agggatcaaa aacccgtgtc caaaagtaga aagcttgtgc
     1801 tcaagatctt ttttatgatc aaaaaaagta gctataaatg aacctgctat aaaagaacca
     1861 agaacgattt caagttttgt aataaccata gcaacaatga tcagtataaa aatggccata
     1921 caaaatctta tatctttttc atttttatct tcccatggca taagcacaac tttaagctga
     1981 ggataccacc aaaaaagcac accaagcatt ttaaatccaa gcaaacaaag ccccaaaaag
     2041 atattaagat ataaaatact ttgcgctaca tcaataatac ctgttccttc gcgcaaaaaa
     2101 gctcccgcta tagtcaaaag cacaatagaa atcacctcag ctaaagtagc cactatcata
     2161 gcaatattta gccaataaca ctcttttcca aaatccttaa aaagtaaaga taaaagccct
     2221 acactcatca caggtataat gataacaaat actaaagaaa gtccaaaaat ccatactata
     2281 aaagaagata aagcgtaaag taaaaaaata taaaaaaaac tttttttagc aatttcttta
     2341 tccatattaa agaaggctct taaatttacc tccatacccg ctataaacat tagataataa
     2401 aaacctacat ttgccaaaag tgcaaaattt tcactttttc ctatgaaacc aaaatgcgct
     2461 attattgccc ctaaaataat ttcagtagct gaaagaggca agcgtaaaat ttttgcaata
     2521 tgcggagaaa aaagtaagca taaagctata acaataagaa tttttaaatc aattaaagcc
     2581 tgtgtatcaa tgacactctg atgcaaaagt aaatcccatt tcttttaatt ttattatatc
     2641 ttgacttggt tcttcacctt tagtggttaa ataatcccct ataacaatag ccccagcacc
     2701 tgcttgaaaa atttcatatt gtctttctcg taataccact tcacgcccac ctgctaccat
     2761 taccacgctt tgcggtaaag cctctttggt atcacgaaca atttttaagg cttcatcagc
     2821 gctaagtctt ggaacttgta gttttaaatt ttcatttgct ataaaaaaat taataggcgt
     2881 tgaaaaaggt tgtaattctt gcaaagattt tctaaaactt agcctatctt cttcactctc
     2941 acccatacca tagattccac cacaacaaag cataagccct gcttctttag cgtttaaatt
     3001 ggtttgaaat ctactttccc aagtatgcgt ggtgcaaatt tgtggaaaaa attccttaga
     3061 actttcaaga ttgtgattat aagaaaaaat tcctgctttt ttaagttctt tgagttgttc
     3121 cacgcttgcc atgccattac aggcaattaa aagcaagtta ggcacttctt tttgcacggc
     3181 cttagcagct tcgcaaacat actcaagctt ttcatcatca agcccaagtc ctgctgtaac
     3241 caaacaaaaa cccaaggctt catttttctt tgccattttt gcttctaaaa cgatttgtga
     3301 aagttcttta cgacgatatt tttgaatatc tgtttttaca tgagcgcttt gggtgcagta
     3361 tttacagtct tctgaacaat ttccactcgc tatatttgaa atagcacaaa gcatgatttg
     3421 cattctaatc cttcatttct tttttgattt tacattttaa acattctaag aatgtacctt
     3481 ttttaagctc ttttatcact aaagtttcgc cacactcttc gcatttttct tcacttggtt
     3541 tgtatttgct tataaaattg cattttggat aagcactaca gccataaaat ttaccacgtt
     3601 ttgaaaagcg ttctacgatt tcaccttttt gacaacttgg acaagtaatg cctgtaccat
     3661 tagctttagc ttttgcggct gtattttcgc tttcgttttt gctttcactt tttaaatttc
     3721 ttgaatactt gcattttggg aaatttaaac acgctacaaa ttctccaaaa cgcccttttc
     3781 taatagcaag ctctccgcca caatcaggac aactttcgcc tagttttgtg acagtttttt
     3841 gactagctat ttttgttttt ccttcttcga tttttctcat aaaaggatag taaaattctt
     3901 ttaaagtttc ttgccaatct gccttatctt ctgcgatttc atctagggta ttttcaaggt
     3961 ttgaagtaaa tttactatct actatatcgc taaaattttt ctcaagcact tcggttacat
     4021 taaaagcaac atcgctagga atgagttgtt ttttatctat tgttacataa tcacggcttg
     4081 taagtataga aatggttggt gcataagtag aagggcgacc tatgcctaaa ctttcaagtt
     4141 tttttacaag tcctgcttct gaataccttg aaggtggttc ggtaaaatgt gagttcattt
     4201 ctaaattttg cacttttaaa ttttggccta ttttaaaatt tggcaaaatt ttatccttat
     4261 ccatatcacc ataaacttta taatatccat caaaaaggat ttttctaccg cttattttaa
     4321 aaactactct atcatttttt acaaatacat tttgagtttg agagatagca ggactcatct
     4381 gacaggctaa aaagcgattg taaataagtg tgtaaagttt taactcatct ttgtctaaaa
     4441 atttagccgc aatttctgga gtaaaactta aatttgtagg gcgtatagct tcatgagctt
     4501 cttgagcgcc tttagtcttt gtagtatata catttgcttt gcttggaaga tagtccttgc
     4561 caaaatttgc ttgtatgaat tttcttgcat tttctactgc ttctttggct aaatttaaac
     4621 tatcggttct catataagta ataaccccca tcacgccttc atgggtattt actccttcat
     4681 agagcttttg agctatcatc atggtttttt tagggttaaa accaaggcga ttgctggcac
     4741 tttgttgtaa agttgaagtc ataaaaggag gcggcggagc gatttttctt tctttgcttt
     4801 caatgtcact tatactataa acttcatttt tacaagcttc tagtataagt ttagcacgat
     4861 ctttgttggt aatggtaagt ttttctatct tggctttatc aaactcaact agttctgcat
     4921 ctaaatcttt ttgaaaaatc atatcaatac taaagtattc taggggtaca aaggcacgaa
     4981 tttctttttc acgatcgact atgatcttta aagccgcact ttgaacacgc ccagcactaa
     5041 gtcctctttg aattttttgt cctaataaag ggctgagctt ataccctaca atgcgatcta
     5101 aaagacgtct ggtttgctga gcatttacag agtgcatgtt taattttctt ggatttttta
     5161 aagcattttc tatagcgctt ttagtgattt catgaaaaac aatgcgtggt aaggtgtttt
     5221 catcttttcc tatagctttt gcaatatgat aggctatagc ctctccttct ctatcttcat
     5281 ccgttgcaag atagacttct ttggcatctt tggctttgct tttaagttct ttaactaagg
     5341 cgctatgatc acttgtgatt ctatactcag ggataaattc atcatcttct attttaatcc
     5401 caaagcttga tttaggcaaa tctctaatat gtcctttaga agcgataact tcataatctt
     5461 ttcccaaaaa atttcctatg gttttagctt ttgcaggaga ttctactatg attaaatttt
     5521 tcttcatttt gcacccttgt taaataaaaa gctgaattta gctaaaaata tttaaaattc
     5581 tacttataaa atatatttta atcaagctaa aatattttaa aaacaaaact atcataacaa
     5641 aataaataaa atataatttt aa
//
LOCUS       DARBAR010000107         5606 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.107, whole genome shotgun sequence.
ACCESSION   DARBAR010000107 DARBAR010000000
VERSION     DARBAR010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5606
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.107"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..1141)
                     /locus_tag="SB815_001480"
     CDS             complement(<1..1141)
                     /locus_tag="SB815_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG0907197.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKDFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILN
                     FNSKKILTKSFIYKGYKYIIIVYPRFLDLELFWTKMAIGFGVCLLFVFILMLLLGRRI
                     EKNFNKILDFLDSIGDHKVVILEKGIFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKI
                     TLKNTQLASVISAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSVKLN
                     ALTHKLNFVFNLNSEALQMQEFDLFSLCEKITKNPGFERVALQGKSTKVKADEFLIEQ
                     VIINLLSNALKYSQKKVILTARDQKIIVQDFGKGIEEDKIKLITKK"
     gene            complement(1135..1797)
                     /locus_tag="SB815_001481"
     CDS             complement(1135..1797)
                     /locus_tag="SB815_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG0907198.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGIGYK
                     LC"
     gene            complement(1784..3367)
                     /locus_tag="SB815_001482"
     CDS             complement(1784..3367)
                     /locus_tag="SB815_001482"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEG0907199.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQMLSD
                     IEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            complement(3364..3852)
                     /locus_tag="SB815_001483"
     CDS             complement(3364..3852)
                     /locus_tag="SB815_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907200.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGHSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            complement(3852..5522)
                     /locus_tag="SB815_001484"
     CDS             complement(3852..5522)
                     /locus_tag="SB815_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEG0907201.1"
                     /translation="MSEVNKKVQDGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQGDNSKLLFNVGDSIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDIGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELSSSPV
                     QEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRIKEREVLNEINNDDKVTLGDIIKDQLA"
BASE COUNT         1817 a          999 c          639 g         2151 t
ORIGIN      
        1 atttttttgt aatcaatttt attttatctt cttctatgcc ttttccaaaa tcttgcacta
       61 ttatcttttg atctcttgcc gttaaaatga cttttttttg actatatttt aaagcattag
      121 aaagcaaatt tataatcact tgctcgatta aaaattcatc agccttaact ttcgtgcttt
      181 taccttgcaa tgcaactctt tcaaagcctg ggtttttagt gattttttca catagagaaa
      241 aaagatcgaa ttcttgcatc tgcaaggctt cactattaag attaaaaaca aaattaagct
      301 tatgggttaa agcattaagt ttaacgcttt gacgtgaaat tttttctagt aattcctttt
      361 ttaatttttt atcttccaat ttctcatctt ttagcatctc taagctaaga tcaatcacgc
      421 ttaatggatt tttaagctca tgagaaatag cagaaatcac gctagcaagc tgagtatttt
      481 ttaaagtgat tttatcgctt tgttttttat ttttttgggt attctttaga attttatcct
      541 tagtttttaa aagtttctca tttagtaaat taaattcttt aaagattcct ttttctaata
      601 taacaacttt atgatcccct atagaatcca aaaaatccaa aattttatta aaatttttct
      661 ctattcttct acctaacaac aacattaaaa taaaaacaaa cagcaagcat actccaaaac
      721 cgattgccat ttttgtccaa aaaagttcta aatctaaaaa acgaggataa acaataataa
      781 tatatttata tcctttgtaa ataaagcttt tagtgagaat tttttttgaa ttgaaattta
      841 aaatttctcc ttctttaaga ttagaaaaaa aatcaggatt ttttacagaa cttattttca
      901 tatcattgtt taggataata aaatcagccc tagtatcttt agcaaaatcc ttgatattag
      961 catcatttaa atgctctaag agagaaaatt ttaaaacatc atcaaggctt ttgatttttt
     1021 gttcatattg ttttataagc aagaaattaa gataagaatt agtaaaagta taaaaaataa
     1081 acccaaaaat caaagccaat acaacaaaaa aaactataaa aatattttta gtttttagca
     1141 taatttatag ccaatacccc taacacttat aatatgatct tttagttttg gaaatttatt
     1201 tctaagtctt gttagagcta tattgattgt tttatcactt gtagtatcat ctttccaaac
     1261 actttcgctt aaaaattgtc tagtaagcaa ggtatttgga ttttcaaaaa aacattttaa
     1321 aagctcatag tcaagatttg agatttctaa tttttgattt ttgtaaaaga attcataact
     1381 aaccaaatct aaaataaaat caccaaaaga tagtttttct tcttcttttt tatggcgttt
     1441 taaaattgct ttaatgcgaa gcaaaagctc attgaaatca aaaggtttac aaacataatc
     1501 atcacaacca ctttcaaagc cttcgagtaa atcttgatgt aaagccttgg ctgtaagaaa
     1561 aataactgct tctttatatc cttgctctct taaatcttga attttttcta aagaatctcc
     1621 actgggcaaa tttctatcga ctattaaaag atcaatttgc tcattatcga gcaaatcttc
     1681 aactccaaaa aaatccgcta aagatataac ttcataacca ctagatttta actttaaaac
     1741 aagcagttcg tttaaatcta tatcatcttc tataattaaa attttaaatt tcaacatatt
     1801 ggacaaatac acacgcctct aattgtttta gttcatctaa tacttctttt tgaacttttt
     1861 catcaatcaa aacaacagcc aaagcatacc caaaaccatc tctaccaagc ctaaaatcag
     1921 ctatattgat atttttagct gccaaaacgg aactgatttt agctataact cctggtatgt
     1981 ctttgttttt aaaaataatc atttttccct ttggcttaaa atcagtttta aagccattta
     2041 atccaactat gcgttgttca ttttcattaa acactgttcc tgaaacactg atatttgaat
     2101 tttcggtgat aattttaacg ctaagtttat tattataacc actatttgga agagtttcgc
     2161 aagataattc aactcctttt tctttggcaa caaattctgc attaacataa ttaattttct
     2221 ctcctaaaat tccacccaaa gcaccaacag ctgcaaaagt tagcatagaa tttgcatact
     2281 caccaataat tccttcagcc tctaatttaa tactttttat aggattttta tcaatttgaa
     2341 cagctaaaaa agccatttta gaaacaagtt ctatataagg agctacaaaa ggtggtaaat
     2401 cttcagtttt aattggtaaa tttaaggcat taggataagc cacgcctcgt gctgcgctta
     2461 atgcttgctc acaagcttct cttgcgatat tgtcttgact ttctaaagta tttgctccta
     2521 ggtgagaagt aactgaaata ttttcaaagt ctaaaagagg atgattagtc gcgggttctt
     2581 tatcgaacac atctatacca agccaagcta ttttaccact ttttaaacct tcatataaag
     2641 cctcttctgt gtacaatcct ccacgagcac aatttattaa tcttattcca tctttcattt
     2701 ttgcaatttc ttgctttcct atcataccat tggtttcttt ggtttttggt gtgtgaatgg
     2761 taataaaatc acttttttct aaaatttcat ccaaattttt tgcttgttcc atatctaaat
     2821 ctgtaatctt agaagcagaa atatacggat cataggctaa aattttcata ccaaatgctt
     2881 tagcacggat agctactctt gaacctatat ttccaaaacc tataacccct agcgttttat
     2941 tcatcaattc aatgccatac catttttctc tttcccattt tctttcaatt tttaaaaaat
     3001 tatgagcatt gacaaagctt ctagctgatg ttaaaagatg tgccattgtt agttcaactg
     3061 cggcaatagt atttgcagtt gggacattca tcacaatcac tcctcgttta gaacactctg
     3121 gaatatcaac attatctacg cccaccccgg cacgcacaag cgcttttaat tttttggcat
     3181 gatttaaaaa atttacatct acatccgtag aacttctagt aattgcaact tcaatatcgc
     3241 ttagcatttg cataagttca tcttttggaa attttgcagc ttctataagc tcaatatctt
     3301 cagcttttct tagaatatcg acacctttat ccaaaatagc atcacacact ataatctttt
     3361 ttttcataac caaatttcct ttacttctgt atttatttta tattttttta attctttgat
     3421 aatatcatct ataagttttt cattgcctgt atccaaaaag atttctggac tatggccaga
     3481 tttaagaaga aaatacttca cattaaaaga atttaaagtc tgtcttaagc aaaacataga
     3541 ataaatatca tattttccaa ctataagttg ataatattta tttttctcct taagctcgct
     3601 agtatccgca tcaaaatata aggtaaattt ttctgctgct ggggtaaaat ctcttgtggg
     3661 ccattttgct aattcttctt gccatgaaag atcttgattt tgggtttgaa tgcttggctg
     3721 cgtatttgta tctttagcaa attgtggaat gaaatttaca ttagctttaa attgccaaag
     3781 caatgtaaaa acaacagcaa gcaaaatgag taataaaata ctcaaaatgc ttattgtaat
     3841 gtattttttc attaagctag ctgatcttta atgatatcac ctaaagttac tttatcatca
     3901 ttattgattt cattaagaac ttctctttct tttattctaa caagattttt aacacttagg
     3961 cgaattctat ttttcttttc atcaataaaa actatagcag cttcaatatc gtcgccaatt
     4021 tttaaatttt caagcataga agtgcttata tcttctttat gaattaaagc atcaacattt
     4081 ttacttagct ctacaaaaac accaaaatct ttaatatcac ggatagcacc ttttacaata
     4141 tcgccgactt tatgaatttt agcatattct tgcactggag aactgcttaa ttcttttgta
     4201 cttaatgata ttttttggtt ttcttcatct attttgataa tttttacctt gattttatcc
     4261 ccttgagaga atttgtcttt gcatttatcg tttctatccc aagaagcatc ttcattatgc
     4321 aataaacctt caataccacc aagtttaaca aatgcaccaa aagaagttac tgaggtaatt
     4381 tctccttcaa ccacatctgc aattttgtaa gatttcataa attcatcaaa aggtctagaa
     4441 agtaaatttc ttaaagaaac ccttaagcgt ctttcatttg gattgatttc aattacttca
     4501 acatcaattt cttgaccttt attgatataa tcttttggat ttttaatatt tttatcccaa
     4561 gaaatttcac tgatatgtaa aaatccttct atatcatttc ctaaatccac aaaagcacca
     4621 taaggctcta tatttgatac tattacttta atggtatcac ctatatcaag agtatctttt
     4681 atctcgctcc atggatcagg taaagccgct tttatagata aggataaatg tttgcgttct
     4741 ttatcatact ttattacttt aactggaact ttatcgccct ctttataaag tgttccaggg
     4801 tttacaggtc ctttgtaaga aatttcgctg taatgaacaa ggccatcaac acctcctaca
     4861 tctacaaaca taccataagt ggtaattttt tttacaatac cttcaattaa atcttcttgt
     4921 tgtgctacat tattgatcaa ttcttttcgt tttcttctct catcatctaa agttttttta
     4981 cgagaaacaa tgatactttg ctcatctttg tcgattttaa taattttaac tttaaacgtt
     5041 ttgcctataa tattatttgt ttctttaaag ccatattgag attttggtaa gaaaaattca
     5101 acatcatttt catcaacaac tatcaatccg cctttatttt ttccaactac ttttacggta
     5161 aaaatatcat cttgattttc ttgatagttt ttaataaatt caataacttt ttcttttctc
     5221 aaagcttttt tatgagaaag taaagatctg ccaccacgag aacccataac agcaacttta
     5281 atactatcac ctacattaaa caatagctta gaattgtcac cttgtatttc gctaagagct
     5341 aaaatacctt cagatttttt acctatatct acataaactt catcattttt gatctctaca
     5401 atcacaccct ctgttgtagc ctcttctctt gatttatcaa aagcttctaa aagctgtcca
     5461 aaatcttctt cctcaagata atcatctacg ccgtcttgaa cttttttgtt cacctcgctc
     5521 attatggtcc tttaaaataa tttttagaaa ttgattgatt ttaccttatt tttctttaat
     5581 tagtgttaag tttttttatt tttgtt
//
LOCUS       DARBAR010000108         5549 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.108, whole genome shotgun sequence.
ACCESSION   DARBAR010000108 DARBAR010000000
VERSION     DARBAR010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5549)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5549)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5549
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.108"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            143..1922
                     /locus_tag="SB815_001485"
                     /pseudo
     CDS             143..1922
                     /locus_tag="SB815_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858176.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NTPase KAP"
     gene            complement(1977..2174)
                     /locus_tag="SB815_001486"
     CDS             complement(1977..2174)
                     /locus_tag="SB815_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907202.1"
                     /translation="MQTQQVVTKIEIQKVRIPQELLTLSPLEKPIAKNELDILNAYSM
                     LFYKYKQCEIQIRKIKELNDE"
     gene            complement(2092..2511)
                     /locus_tag="SB815_001487"
     CDS             complement(2092..2511)
                     /locus_tag="SB815_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907203.1"
                     /translation="MINLLFGNAKLYIALALMAILTGYFYLRLDSTKAKLEKSQSDLA
                     LALKINENNQEKLKELNQIHKTELKALNEANNQKNQVQERVQYVKEYIYKSNENNITK
                     LFNDVVDRLWDANSTSSNQNRNSKSKNSARTTNIKSS"
     gene            complement(2573..3031)
                     /locus_tag="SB815_001488"
     CDS             complement(2573..3031)
                     /locus_tag="SB815_001488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002810261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907204.1"
                     /translation="MKVTINRRYTGKTCVIGKFKVLDDEEKILFECFSLEEDKEGLES
                     GKDLRIPEGNYNLKRHSPSRFENTLRSITKKDDTMINVYNDEVPSSRAILIHWGNTDK
                     DTQGCILLGLTKDNNNESVGQSRQACKEFYDLVYGKNLEDIKLEITNELA"
     gene            complement(3080..4363)
                     /locus_tag="SB815_001489"
     CDS             complement(3080..4363)
                     /locus_tag="SB815_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907205.1"
                     /translation="MSVDLREIAIKTEEINKDFSEALEILKELFKNGVKPSDESIKNA
                     INEVLTSFNFIKQSELKEKLEALLEELGINANINEESLKEVVLKVVLENQESLKGDKG
                     DPFTYEDFTEEQLENLKGQDGAKGADGKSAYELWLENEENTGKSQDEFLESLKAQTPT
                     KEEIKPIIEEMLEDMKLNLGINGIKVSNSIPTPKTKANVNDLIITYNENVKQLWLCVA
                     SDDKYTSWINLLGNENITAQELIIISFDTNLNSGQYGGCLSDLRFGFENSLASTTQII
                     KGLNEGSFLITKDGMGLKSKNYTEVSVLSKPSKNQIEGNIKTSGIYNDPAWHNITNAL
                     KKYDGNANECCLWASNIKNSVSIELFTNEIPMSLFYRQAGYYGNVNLSNIKMQKALRV
                     QNEIIVERSFIGIKKEIDKTTYGDNAFLFEFEEEK"
     gene            complement(4360..4731)
                     /locus_tag="SB815_001490"
     CDS             complement(4360..4731)
                     /locus_tag="SB815_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1353 domain-containing protein"
                     /protein_id="HEG0907206.1"
                     /translation="MKNELKRVCVKPYDKDRFEVIQDYEFILPNYKGIVPQGFKTDGA
                     SIPRLFWSLFPPFKSEYFSACVVHDFLCEKAKSRKDYKLADLVLKEAMQALEINKFKI
                     FVFYCSCNLFHQIKCLIKGIR"
     gene            complement(4721..5185)
                     /locus_tag="SB815_001491"
     CDS             complement(4721..5185)
                     /locus_tag="SB815_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907207.1"
                     /translation="MNNLENNTNVILFAGSAILAFFYQFLAYFKIETAQVIVLLIVFS
                     FSGIASMIKTLALRKNFRNFLITDILSKTLMFFVPFILAIMAKQISVFYYLVDYSFSF
                     LTIGEFLAFLISVQSIRKKEDIKEMDFYNLFIEKFKNIANKYLKLEGDKNEK"
     gene            complement(5182..>5549)
                     /locus_tag="SB815_001492"
     CDS             complement(5182..>5549)
                     /locus_tag="SB815_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002789149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="HEG0907208.1"
                     /translation="ALEELKELKLEELKAIKEEKLLFMPFKNTIFQIDTEAKINISGK
                     VSEIMLANLNNTPLENIAWIDKDNKIITFNKEEFLEFGVGIAKYTESIIFKNDELRNK
                     VKNATSLEELNLIAWESEK"
BASE COUNT         1997 a          799 c          630 g         2123 t
ORIGIN      
        1 tatgggcttt tatcttatat tcaaaaaaat acgcaagatg ataagttaaa aaaccaaact
       61 tatgatctaa tgaatgcttt tcgtttttat ttaaatgatt tttttgaaaa ttttgatatg
      121 agtaggggtc ttaaggagta aaatgtatat cacaattgat aaaattgcag agtttttaac
      181 tagcaaatct agagtatgtc taaccataaa tggacattgg ggtataggta aaactcatct
      241 atggaaacaa gttgaagaaa aaataaatgc agataaaaaa gttgtttata tcgatctttt
      301 tggcaaagaa agctataagc aaatattaga agaaatagtt tttaaaatac atcagaacta
      361 taataaaaca gtaaatgtta cttcacggat tatatctaaa actataaaca ttaaatccgc
      421 tggaataatt aacattaatc ctgatgctat tttttccttt ttaaaaaagg aagactttaa
      481 taatattatt gtgtgttttg ataacataga aagaagatct gacaatcttt ctttgaaaga
      541 aattttggga cttgtaaatt tactcaaaga agacaaagaa tgtagtgttg ttcttatttt
      601 gaataaaaat gagttaaata aacaagaaga caatgctaaa aataatatgc aaacatcaag
      661 caacgataaa actcagcatg atgccaaaca aaacaataat gactggtatc aagaatacaa
      721 agaaaaagtt attgattata aagtgtgttt aaaagataat gatgagattg caaaagcttt
      781 aattgaagaa gcatttatgc aagatgagaa attgatacga gataatggtt taaaaagtaa
      841 tttagttgat attgttttaa agcactatca agatatttgc gatagcaatc taagattgtt
      901 attgaaaata ttagaacata taaaatattt taatgaaaga tgttttcaat cacattatga
      961 taaaacaatt aaagaagaat ttataatagt gatacatgaa cattaccttg caattttcaa
     1021 tgccgtaaaa gacttttata tacaacgaaa agaaaaaaga aatctgagta atatgtatat
     1081 atacgatatt gtcacaaggt atttaaataa tttttttatt ataaatgata atgatgaaaa
     1141 aaaattaaat gatataatta ttcgacaatt atcatctaaa ttattgttaa catttgaaaa
     1201 aacttatacc acctattttg atgaaggcgg tagcgatgcc gattttaaaa ataaaataga
     1261 aaacatattg caaattcgtg ataataaact agaagttttt gcaaaagatt taaattctga
     1321 aaaattttta aaaacaatat attggtttaa acaaataata aaatcagatc aagaagtaag
     1381 tgaggaatac aaaaaaggat attttgaaaa aatagacaag attatccaaa ttttaattaa
     1441 agagcaatat ccttattata gtaaaagaat aaagctgcta attgctttta gtaaacaatg
     1501 caaaaaaatt tatagtgaaa ttacaaaaaa acacaataat gaagacaaat taaaaatctt
     1561 taagtataat ataaaagaat atcctcacat attccatttt gtcaatatag ataagtttaa
     1621 tcaatatgaa ataaaatcta ttaaagatgc tttttataat gataaatatt ttctcaaaaa
     1681 ttttatagat ttttttagac ttgtgccgaa aaaaaatcct attccaaaag gtgatcataa
     1741 tcttaataga tatactgata ccgatagcaa agagtatgaa aaaattttca aaaagaataa
     1801 tttattttta gcttttatag aatatataaa tgaaaataaa tacaaaaaaa caaatattta
     1861 tcaaagatcg aagagttaat aacgataagt ccaatatctt atcaaaacta ttttatctat
     1921 aagattaata attttaacaa ataacatctt cgcccgcatt tacgagcaaa gatgtgttat
     1981 tcatcattca actccttaat ctttctaatc tgtatctcac actgtttgta tttgtaaaaa
     2041 agcatagaat aagcatttaa aatatctagt tcattttttg ctattggctt ttcaagagga
     2101 cttaatgtta gtagttcttg cggaattctt actttttgaa tttctatttt ggttactact
     2161 tgttgagttt gcatcccaca acctatcaac gacatcgtta aaaagcttgg taatattatt
     2221 ttcattgctt ttataaatat attctttaac atattgcacc ctttcttgta cttgattttt
     2281 ttgattgttt gcttcattta aagcctttaa ttctgtttta tgaatttgat ttaattcttt
     2341 taatttttct tgattatttt catttatttt taaagccaaa gctaaatcac tttgactttt
     2401 ttctaatttg gcctttgtgc tatcaagtct tagataaaaa tatcctgtta agattgccat
     2461 taaagctaag gctatataaa gctttgcatt tccaaataaa agatttatca tattttgttt
     2521 agaagtttaa gtgtggggtg taaactttaa cctacttaaa ctttatctcc tttcatgcta
     2581 actcatttgt tatttctaat ttaatgtctt caagattttt accatacacc aaatcataaa
     2641 attctttaca agcttgtctg ctttgaccga cactttcatt attattatct ttagtaagcc
     2701 ccagcaagat acaaccttgt gtgtctttgt cagtgtttcc ccagtgtatt aaaattgcac
     2761 gacttgaagg aacttcatca ttataaacat ttatcattgt atcatctttt tttgtaatac
     2821 ttcttaaagt attttcaaat cgtgaaggac tatgtctttt taaattataa tttccttcag
     2881 gtattcttaa atctttgcca ctttctaaac cttctttgtc ttcttccaaa gaaaaacatt
     2941 caaaaagaat tttttcttca tcatctaaaa ccttaaattt accaataaca caagttttac
     3001 ctgtgtatct tctattaatt gttactttca ttataattcc tttcttttta ttttttgtat
     3061 tttattttta gatttaaact catttttctt cttcaaattc aaataaaaaa gcattatcac
     3121 cataggtagt tttatcaatt tcttttttta ttcctataaa gcttctctcg actataattt
     3181 cattttgaac tctaagggct ttttgcattt ttatatttga aagattgaca tttccataat
     3241 atccagcttg cctataaaaa agactcatag gaatttcatt tgtaaaaagc tctatactta
     3301 cactattttt tatattagaa gcccaaagac agcattcatt tgcattgcca tcatattttt
     3361 ttaaagcatt ggtaatatta tgccaagcag gatcattata aattccgctc gttttgatat
     3421 ttccttctat ttgattttta cttggttttg aaagaacgct aacttcagta taatttttag
     3481 attttaaacc cattccatct ttagtgatta aaaaactgcc ttcattaagt ccttttataa
     3541 tttgcgtagt gcttgctaaa gaattttcaa aaccaaaacg caaatcactt aaacatccgc
     3601 catattgacc actatttaaa tttgtatcaa aactaataat aatcaactct tgtgctgtaa
     3661 tattttcatt tccaagcaaa ttaatccaac ttgtgtattt atcatcactt gccacacaaa
     3721 gccaaagttg ttttacattt tcattataag ttataattaa atcattaaca ttagcttttg
     3781 tttttggagt gggaatagaa ttagatactt ttattccatt aatgcctaaa tttaatttca
     3841 tatcttcgag catctcttct ataataggtt taatttcttc ttttgttggt gtttgagcct
     3901 ttaaactttc taaaaattca tcttgacttt ttcccgtgtt ttcttcattt tcaagccaaa
     3961 gttcataagc acttttacca tcagctcctt tagctccatc ttgccctttt aaattttcaa
     4021 gctgttcttc tgtaaaatct tcataagtaa aaggatctcc tttatcacct tttaaacttt
     4081 cttgattttc taaaacaact tttaatacaa cttcttttaa actctcttca ttgatatttg
     4141 cattgatgcc aagctcttct agcaaggctt ctagtttttc ttttaattca ctttgtttta
     4201 taaagttaaa acttgttaaa acttcattta tagcattttt aatactttca tcgcttggtt
     4261 ttactccatt tttaaaaagt tcttttaaaa tttctaaagc ttcactaaaa tctttattga
     4321 tttcttctgt ttttatggca atttctctta aatccacgct catcttatcc cctttattaa
     4381 acatttgatc tgatgaaata aattacaaga gcaataaaaa acaaaaatct taaatttatt
     4441 tatttctaaa gcttgcattg cttcttttaa aacaagatca gcaagtttgt aatcttttct
     4501 tgattttgct ttttcacata aaaaatcatg cactacacaa gcactaaaat actcactttt
     4561 aaaaggtgga aacaaagacc aaaaaaggcg tggaatactc gctccatcag ttttaaaacc
     4621 ttgtggtaca atgcctttgt aatttggcaa aataaactca taatcttgta tcacttcaaa
     4681 tctatcttta tcataaggtt ttacacaaac cctttttaat tcatttttca tttttatcgc
     4741 cttctaattt taaatatttg tttgctatat ttttaaattt ttctataaaa agattataaa
     4801 agtccatttc tttaatatct tcttttttcc taatgctttg gacactgatt aaaaatgcta
     4861 aaaactcacc tatggttaaa aagctaaaag aataatccac aagatagtaa aaaacactga
     4921 tttgcttagc cataatagct aagataaaag gcacaaaaaa cattaaagtt ttacttaaaa
     4981 tatctgtgat taaaaaattt ctaaaatttt ttcttagagc taaagtttta atcatagagg
     5041 ctatacctga aaagctaaaa acaatgagca aaacaataac ttgagctgtt tctattttaa
     5101 aatacgctaa aaattgataa aaaaaagcta atatagcact gcctgcaaat aaaataacat
     5161 tagtgttgtt ttctaagtta ttcatttttc actctcccat gcaattaaat ttaattcttc
     5221 taaagatgtg gcatttttca ctttatttct tagttcatca tttttaaaaa taatactttc
     5281 agtatattta gcgataccaa ccccaaattc taaaaattct tctttgttaa atgtaatgat
     5341 tttattatct ttatcaatcc aagcaatatt ttccaaagga gtattattga gatttgctaa
     5401 cattatctcg ctaacttttc cgctaatatt aatttttgct tccgtgtcaa tttgaaatat
     5461 agtattttta aaaggcataa acaaaagctt ttcttctttt atagctttta gttcttctaa
     5521 ttttaattct tttaactctt ctaatgctt
//
LOCUS       DARBAR010000109         5378 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.109, whole genome shotgun sequence.
ACCESSION   DARBAR010000109 DARBAR010000000
VERSION     DARBAR010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5378
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.109"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            75..587
                     /locus_tag="SB815_001493"
     CDS             75..587
                     /locus_tag="SB815_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907209.1"
                     /translation="MREIIAVKKDFIAFNKKSFCQDRLLTSGKAYYLHYKDNNKFCGY
                     AGKECAKQKCNNDLNAIPDFTKSLISNFKKETKIIQGKKHTHRANLSKSDISMAIEYV
                     VLRQSKMKKFKKANYFILNDYYKEYLKTNILSPNSIKHIINIEKKAPLQFKLENLLTC
                     YAYEYKIYLH"
     gene            complement(816..1517)
                     /locus_tag="SB815_001494"
     CDS             complement(816..1517)
                     /locus_tag="SB815_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEG0907210.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLKEQGVKEDEINYNSPNIID
                     RLSDPYSNDTQAAYRYIGTANLLIYTQNVKLGKSILEKISSLAKFGIVTKIDDYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1514..2716)
                     /locus_tag="SB815_001495"
     CDS             complement(1514..2716)
                     /locus_tag="SB815_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEG0907211.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESTPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLANAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGFISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKK"
     gene            2819..4168
                     /locus_tag="SB815_001496"
     CDS             2819..4168
                     /locus_tag="SB815_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEG0907212.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYIKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLIQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQENKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIVAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLDNLAKDED"
     gene            complement(4192..5235)
                     /locus_tag="SB815_001497"
                     /pseudo
     CDS             complement(4192..5235)
                     /locus_tag="SB815_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
BASE COUNT         2011 a          847 c          864 g         1656 t
ORIGIN      
        1 acaataaatt cagatgaaat aatagaaaaa gttaggtttg ttgttgaaat tatcgataaa
       61 atcaggaatt attcatgcgg gaaattatag cagtaaaaaa ggattttatt gcttttaata
      121 aaaaatcatt ttgtcaagat agattattga catctggaaa agcatattat ttacactata
      181 aagataacaa taaattttgt ggttatgctg gaaaagaatg cgcaaagcaa aagtgcaata
      241 atgatttaaa tgctatacca gattttacaa aatctttgat ttcaaatttt aaaaaagaaa
      301 ctaaaataat ccaaggtaaa aaacacactc atagggcaaa tttgagcaag agtgacattt
      361 ctatggctat tgaatatgta gttttaaggc aaagtaaaat gaaaaaattt aaaaaagcaa
      421 attattttat actaaatgat tattacaaag aatatttaaa gacaaatatt ctctcgccaa
      481 attcgatcaa acatattata aatatagaga aaaaagcacc tttacaattt aaattagaga
      541 atttgttaac ttgttatgct tatgaatata aaatttactt gcattaaaaa gcattcctag
      601 caacaaaaga acatatttat caagtatctt atcaaattta agaaaatatt acacattaac
      661 agataggcaa ataaatggcg tagaagggtg gtttaaaaaa attagaaata aagaagttgc
      721 tgaagctaaa ttaaaaaaat ttttatatca aaaaccgcac gaaaaaattc catagtgcca
      781 agctaagcct taaagcttag cttgaaattt catcatcagt cttttaagta gtattctata
      841 gtagaaacca ctcttatggt tttgatataa ggggtgtttt tatctctgtt gctgatgcta
      901 aattgtcctt gagaagcctt ttttatcttg cctagatggc tgtttgaatc ttgtgcgaat
      961 tttatcgctg cgtttctagc attgagcgtt gcttcttcta tcatttgtgg ttttatctca
     1021 tttagcttgg tgtaaaggta ttctatgtca taatcatcga tttttgttac tataccaaat
     1081 tttgcaagac ttgaaatttt ttctagtatg ctttttccaa gctttacatt ttgagtatag
     1141 atgagtaaat tcgcagtgcc tatgtatcgg tatgcagctt gagtgtcgtt gctataagga
     1201 tcacttaaac gatctatgat atttggcgag ttgtagttga tctcatcctc ttttacgcct
     1261 tgttctttta aaaatttgat gatattttct ttatcttgct ctagttcttc gtataaattt
     1321 gtaagattgt tatttgatct tgtgaatttt ataggaagta tcaaagtatc tgcttcgact
     1381 tctttttggc ttaaaccctt tacacttaca cttctttcaa gtgttttaaa atcacttaaa
     1441 gccttgttaa atccaaaagc tagaatcaaa cttgctaaaa ctatggctaa agccataaag
     1501 atattatttg ttttcatttt ttctccttta ttttgattag aaaatatatc atatttgcaa
     1561 ccaatacgca agcacacatt acaaaagcaa ggattatcgg cgtatttgcg ttaatagccc
     1621 caaccacgaa ggagataaaa cctgcaaaac caaattgcac cgttccaagc accgcagaag
     1681 cagttccgct atgttcttta aaccttgcca tagccaaagt cgtggtattg ggtgcgatga
     1741 aaccaagcat agcgatgctt gtaaaaatac taagctcaaa aagcaagaaa tttgggtgaa
     1801 aaaaggcatt tgcaagtaaa atcacagtcg atataaacat tatcatcaaa gcttttgcca
     1861 aaattttttc gctttcgtat tttaaaacca atctcgcatt gatatttgca cagatgacaa
     1921 aacctaaagc atttgcccca aaaagcaagg caaatttttg ctcacttaag ctaaaaaact
     1981 gcgtaaaaac aaagcttgat cctgtgatat aagcaaacat cgccgccaaa gcaaaagaag
     2041 cacatagtat ataaactaaa aagcgtttat cgcttaaaac aaatttgtag cttttcatcg
     2101 cttcatgatg ggaaaatttt ttgtttttaa gatgaggtgt ggactctttt aaaccaaaaa
     2161 gtatcatcaa aaaaagtaaa attcctaaag caaacaaagt cgcaaaaata ctatgccatg
     2221 aaaaatactc tagcaaaatt cccccaaaag ttggcgaaag cataggagca agagaactaa
     2281 aaaccatcat caaagcaaaa atccctgcag cttctttgat ctcaaacaag tcattgacaa
     2341 tagcccttgc gataaccaca cctgcacaac ccccaagtgc ttcaaaaaat ctcaaagcga
     2401 taaaagcata aatatcatcg ataatcacac aaaacaaact cgaaacgatg aagaaaaata
     2461 tccccaccaa agctggaatt ttacgcccaa aaatatcact taaaggccca tatataagct
     2521 gtcctaaagc aaaagcgata aaaaaacttg cgatactaag ttgggttaaa aaagaattag
     2581 tttgaaaact ttgctccaca tgagaaagtg cgggtaaata catatctgta gaaagtggcg
     2641 ctatgcttga catcaaagca aggataacga tgagtttaaa tttagcaaag ccgtgaattt
     2701 tggtgtgttt ttgcatttgt aatcctaatt attctaaaag aatgatttta acaagtcaat
     2761 cttagaataa tctttgtttt tctatgttaa atttagggaa aaattctaag gaaattttat
     2821 gcaaaattta aaccaaaatg aacaaatcaa atgcccaagt tgtggaagtt ttatcgatat
     2881 cagcactgct ttatatgctc aaattttaga taaagctaag caagaaatgc taaaacaaaa
     2941 aaaagaattt gatgatgagg taaatgctaa aagagctgaa tatatcaaag ctttaaatga
     3001 tttaaaaact caaaagatag aacaagaaaa actcataaac gagcaagtaa gccaaaagct
     3061 tcttttagaa aagcaaaaat ttgaacaaga acttcttata caaaagcaaa atttccaaaa
     3121 agaattcagc gagaaattta acaaagagca tgaaaatgaa atgaaaatca tgcaagaaga
     3181 actcgagaaa aaaagcaaag agcttagcga gtttttaagc ataaaggctg aaaatgaaag
     3241 acttaaaaga gaacaaaaag aaaatgaaga aagactgaaa tttcaagcca aagaagaggc
     3301 ttttaaagaa tttaaagaac aagaaaacaa aaatttggaa tttgaaagag aaaaaatgcg
     3361 tcttgaattt caaaaaagca ctcaagagca agatcttaaa tacaaagaac tagaaacgaa
     3421 ttttaaaagc gtagcccaaa agctagaaga cgcacaacgc aggatagaac aaggctcaca
     3481 gcaactccaa ggcgaagcag ccgaactact catagaagaa tacatacaaa gtgagtattt
     3541 aagtgatgaa gtaaaagaag taccaaaggg cgtaaatgga gctgattgtc tgcatatagt
     3601 aaaggataat tttggaaata tttgcggaag tattttatat gagagtaaac gcactaaaga
     3661 atttaataaa gaatggcttg ataaacttaa actagatagt atagttgcaa aaagtgatat
     3721 agcggttttg attacaaaaa ctatgccaaa agataaagaa aaaacgcatt ttaaagaagg
     3781 aattttgatt tgtactttta atgaattcaa aggcgtttta gcagtgctta gagaaagcat
     3841 tatcaacgct tacaaactca aaaatgccct gcaaaacaaa gatgaaaaaa atcacatttt
     3901 atacgaatac ttaaattcca aggaatttaa cacgcaaatc acttttatac tcaaaactta
     3961 tcaaaatatg aaagaagaat tagaagctga aaaaagagct ttgcaaaata tatggaaaaa
     4021 aagagaaaga gctatagaaa atctaagttt taattccact gccatagtga gttctttaaa
     4081 tgcgatattt agtgacttac aaggtggaaa tttgataggc gaagaaggga ttaaaagtct
     4141 tgacaattta gccaaagatg aggattaatt ttgggcttag cccaaaatta atcattctcc
     4201 tgggaagtga tttggatttt tccaaggtcc gtattttact tttatgtatt ctttagggtc
     4261 taaattttgt tgcggtgaag caaaatactc aggttttaat gatggggatt tgctataggc
     4321 tgtatcaagt cctgcgcgat tttctgtggt ggttataggc attcttacaa aacctgtatt
     4381 gacataagct gctatatcta gtgcatcttc atcgcttaat tataggatta tccgcactcg
     4441 caccaaaagg cacggctgat tttaaaaatc ttgctaaaaa tggtatcata gccattgtcc
     4501 accatcagga tagataagta aagatggata taaatgtccg ctaccttgtt cgtaattatc
     4561 attttttacc ccaagtcctc tttcgccatg acaagcaacg caattttctt caaagagctt
     4621 tttcccacgc acagggtcag ctgggcgatt tggaaaattc atcttagcaa aaaaatctcc
     4681 ttcaagcttt acgccgtctt taataccata agcttctttt agccatttaa aataagctaa
     4741 aattgctttc atttctttag aatcattagg aaatctatga gagtcagttc cgcccattcc
     4801 gcgaattcta tcttcaacag agatgatttt catcgtttct atgtcaagtc ttggataatt
     4861 gtttaggaca tttaaaaatg gaataacata tttttttgtc cctggcaaac cattgccgtc
     4921 attgtccatg tgacaggaaa tacaatttac ttcgttgctt gtctttttta gcttgctata
     4981 gggtcctaaa gtactttctg tcttgcttaa aagctctatg ccataacgga ttaaatcccc
     5041 ttgcttgcct tttggaacat cattgatgct taaattttta tttggccatt cttgcacagg
     5101 tcttttggaa agctccttaa aatactctac tccttccttg tcgcttaatt cttctcctac
     5161 tttgtaatca ctcacgcttt tagcactaag acttaaacta agacataagc caagtaataa
     5221 aatgtgtttt ttcatgattt tcctcctttt tatttgcagt tcaaattgat tttaatgtat
     5281 tttttcttaa atattaagca taataagaat aatttaaata aaattaaatt ttaaagtgtt
     5341 actaaaagta atatatattt aaagtatata attaatat
//
LOCUS       DARBAR010000110         5362 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.110, whole genome shotgun sequence.
ACCESSION   DARBAR010000110 DARBAR010000000
VERSION     DARBAR010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5362
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.110"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..715
                     /locus_tag="SB815_001498"
     CDS             <1..715
                     /locus_tag="SB815_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEG0907213.1"
                     /translation="YEDFKSHKFIFNHEHQSIFKKNTSQQITLLHPTRIRRPKFLNST
                     HALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYDWLEVADEEIKHFKLLNSALE
                     ELGYKYGDFPVHDNLESALEATKDSLSFRMGIVHRGLEAKGLDANPFVVQKLQSSNHS
                     IKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNRYDFIELCKTFKQFSLAGKKLNIQA
                     RIKAGFTQEECEVIEKFYS"
     gene            complement(706..1434)
                     /gene="pssA"
                     /locus_tag="SB815_001499"
     CDS             complement(706..1434)
                     /gene="pssA"
                     /locus_tag="SB815_001499"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HEG0907214.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKTRNQE"
     gene            complement(1444..2061)
                     /locus_tag="SB815_001500"
     CDS             complement(1444..2061)
                     /locus_tag="SB815_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG0907215.1"
                     /translation="MKDFIAKYGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRELVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEIAIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            complement(2058..3995)
                     /gene="ftsH"
                     /locus_tag="SB815_001501"
     CDS             complement(2058..3995)
                     /gene="ftsH"
                     /locus_tag="SB815_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEG0907216.1"
                     /translation="MNNNTQNNKGNPQGNNFFNKNPIFIFAIFAIIMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            complement(3999..4844)
                     /locus_tag="SB815_001502"
     CDS             complement(3999..4844)
                     /locus_tag="SB815_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEG0907217.1"
                     /translation="MQKKYYELFFIVEEQYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            complement(4867..5259)
                     /locus_tag="SB815_001503"
     CDS             complement(4867..5259)
                     /locus_tag="SB815_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HEG0907218.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
BASE COUNT         1847 a         1046 c          648 g         1821 t
ORIGIN      
        1 ttatgaagac tttaaaagcc acaaatttat ttttaatcac gagcatcaaa gcattttcaa
       61 aaaaaataca tcgcaacaaa ttaccttgct tcatcctacg cgtataagaa ggcctaaatt
      121 tctcaattca actcatgcgc ttgctaaaat aattcattca gtcgctcata tagaatttaa
      181 tgcaattaac ctggctttag atgcgagtta tcgctttaaa aatctacctt tgcaatttta
      241 ttacgattgg ctggaggtgg cagatgagga aattaaacat ttcaaacttt taaattcagc
      301 gcttgaagaa cttggttaca aatatggaga ttttccagtg catgataatt tagaatctgc
      361 tctagaagct acaaaagact ctttaagctt tagaatggga atagttcata gaggtttaga
      421 agctaaaggg cttgatgcca acccctttgt tgttcaaaaa cttcaaagtt ccaatcattc
      481 cattaaaaat cttttaatgg aatatcttga aattatactt aatgatgaaa taaaacacgt
      541 taaaaaagga gatacttggt ggaaatttgc aaaccaaaac aggtatgatt ttattgagct
      601 ttgcaaaaca tttaaacaat tctctcttgc aggaaaaaaa cttaacattc aagcaagaat
      661 caaagctggc ttcactcaag aagaatgcga agtcattgaa aaattttact cttgatttct
      721 tgtcttaaat tttgaaacga taatagtata taaaactcga ataattccat aaagcacata
      781 caagcttgct aaaattacta aactttcaag agggtaaaga tataaaaatg aaaatattat
      841 aattaaaata atcaaaactt ttaaaacact agaacgatta aaatcaagct ttttaaagct
      901 aggatagcgt atattactta ccattaaaag ccctaaaatt gcttgaagca ccaaaaaaac
      961 tacaccataa ggctttaaaa aatcataact gataaatgca taagtccata tagcactcac
     1021 aactgctgcc gtaggtatag gaagacctat aaaaacggag ggttcataag tgcctgtggt
     1081 aacattaaat ctcgccaaac gaatagctcc aaaaaccaca aaaaaagctg taatcaaaga
     1141 tccaagcttt ccaaaatcat aacctatagc catataaaaa agaaccgctg gagcaactcc
     1201 aaaagctact agatcagcta aagaatcaaa ttctactcca aattttgaag tagaatttgt
     1261 aagtcttgca acgcggccat caagcccatc gcaaatcaaa gataaaataa tataaatcaa
     1321 agctgtataa taatttccat gtattgaagc tataatagaa ataaccccta aaaaagctga
     1381 agcagctgta aaaagattgg gtaaaatata aattagttgc ggtctgttat tcattatttt
     1441 tccttacgca aaatagccta gcaatgaacc tgctttaatt tcatcattta agcctatatg
     1501 aattctagta tcttttggta aaagtaaact tatagagcca ttaattaaaa aacccattct
     1561 atctcctgct tttaaatcat gagaaatatt atcaagcttt aattttctat caaaagaacc
     1621 tgcatagatt cgcaaggcta tcgttttatt ctctttaact tttgccaaaa taaaagctct
     1681 ttcattcatc atttttgcag attttaattc actgcacaaa aaaagcccat gtcgtaaacg
     1741 aatatctatt atagacattg caaaaggtgt attaaaattc ccagcatcat aaagagcatt
     1801 tttaatagca atttcaacac attcacccaa atctttatga tgaatatttt ctattttagt
     1861 aaccctacca tccataggtg caaaaatagc tttttcatca ctacaaacaa gttctctttt
     1921 gggcgctcta aaaagaaaaa tacaaattac aattaatgct aatagcaaga tggaaaaaga
     1981 ataaaaaatc cacacaaaaa taaaaattaa gcttaaaata ataagactta aatatccata
     2041 ttttgcaata aaatctttca ttcttctact ttaacttcag ttttaacttc ttcgagttct
     2101 tgtaaacgag ttggtagact attttgatcc tcaaactctt taataatctc gcgcacttta
     2161 ttaccttcaa tagtttcttc ttcataaagg gctgcaacca tagtctcaat cgctccctta
     2221 taagtattta aagtatcttt aacatcttta tagcgttcat ccaaggtttt ctttacataa
     2281 tcatctaaag attctgccat cttttcagaa taatctttga tagtttgtcc accacttaag
     2341 aaagtatttc tttgtttttc aagtaccata agtcctgcaa tttcactcat accatacata
     2401 gaaatcatag cttttatgat atcggttgct ctttctaaat cattacttgc acccgttgaa
     2461 atttcaccta taaacacttc ttcagctgca cgaccaccca aaagtacatc tacttcagcg
     2521 ataagttcat gtttttgcat taaaaattta ttttcctcag gagtatttaa agtataacct
     2581 aaagccgcaa gaccacgcgg aatcacagaa accttactta cacgttttgc gcctttggta
     2641 gtttcagcaa tcaaagcatg accgcattca tgataagtaa caattttctt ttctttttca
     2701 ttaatacgac gtgatttctt ctcaagccct gctatagctc tttcaacagc ttcaactaaa
     2761 tcattttgtt ctacatattt tttagaatcc ctacccgcta aaagcgctgc ttcattaata
     2821 atatttgcaa gatcagctcc tgcaagccct gcggttaagc gtgctatatc ttctacttta
     2881 acttttgggg agattttgac atctttcatg tgcactttta aaatatcaca cctaccttta
     2941 aaatcaggtt tatcaactaa aacttgtcta tcaaaccttc ctggtcttaa aagcgctgca
     3001 tctaaaactt ctgggcgatt tgttgctgct aaaacaatga ctggggaact ttctgtccca
     3061 aagccatcca tttcagccaa aagctgattt aaagtttgct ctctttcatc gtttccaccc
     3121 atcatgccac ttgctgcacg acttttacca atagcatcta tttcatctat aaaaacaata
     3181 gcaggagctt ctttttttgc attttcaaat aaatctctca cacgagaagc acctacaccc
     3241 acaaacattt ctataaaaga cgaacctgaa acactaaaaa acggtacatc agcttcacct
     3301 gcaactgctt ttgcaagcaa agtttttcct gtacctggag gcccaacaag taaaagccct
     3361 tttggaattt tagctcccaa tttaatatat ctttcaggat actttaaaaa atctacaatt
     3421 tcttttactt cttctttagc ttcttcaaca ccagctacat cgctaaattt tactttaggt
     3481 ttttctgaat ttacaagctt cttagaactt cctataccca atatagaact tcccatattt
     3541 ttttgcatac gacttgccaa aaacatccaa ataccaaaga aaataaatac tggcaaaacc
     3601 catgaaaaaa gtatatccgt aaaccaattt gtttcagaat acgcaccata agcgatattt
     3661 ttactatcta gtaaactcac aagctcagga tcattaactt tttttgctgt ataaacagta
     3721 ttgtgagagc ttgaaatcgc tttgattgtt gtttgtccta tactaacttg attgatttgt
     3781 ccactttcaa taagcttttt taactcagaa taagggacat ttttatttac ttcattgcca
     3841 ttcaatgccc cgccaaaaga accattgcca tcaaaaaatc ccttaaaaat aattatcatt
     3901 ataattgcaa aaatcgcaaa aataaaaatg ggatttttgt taaaaaaatt attaccctgc
     3961 ggattaccct tattattttg ggtattatta ttcattactt atcctttttt attattttta
     4021 tatacaaaac tacaccactc attgatttgc atttcatcaa tgagttccaa atcttgaaat
     4081 ttttctttaa ttcttgttga atatttatct aaaattcctg acaaaataag tatagcatta
     4141 tcttctaaat ggtttttaat atctttttct aaaattaaaa tcacatctgc aatgatattt
     4201 gcaacaatta gattatataa accatttgct ttatctatag atccacacca agccttgtga
     4261 aaatcgacac catttaatct tgcattttct aaagaactat caatagccaa ctcatcagta
     4321 tcacaaattt caacattaca accaaacttt gccataataa tacccaaaat tccactacca
     4381 caaccaagat ctaaagctct taatttactt ttagaaaatt tttgtaaaaa ttttacacaa
     4441 gaatatgtgc tttcgtgatg tcctgagcca aaggctaagg ctggattaat ctttatattt
     4501 atacaattct tcttttcttc ttgccaagtt gtatggatgt aaacattatc cactaagata
     4561 ggttttatgc cttttttata ttcttgtatc cagtccttgt tttctttctc tacaagactt
     4621 aaattagaaa taattttatg gtttaaattg aaagtagttg taagtttttg agcaaatatt
     4681 tcaagtgccc atgaaaactc ttctaaactc tcatgggatc taatgtaaac accattatct
     4741 ttctcttcta tggcttctat acctaaatca aaagcaaaat caagaaataa atttttatac
     4801 tgctcttcta cgataaagaa caattcataa tatttttttt gcatttagaa ttttaaaaat
     4861 cagcctttac tcagctgcac cttctccact tcctgttcct aaaacatctt caagtttttc
     4921 ctttaaaact tgtggagtaa aaggttttac aatatagtta tttacgccag cttttaaagc
     4981 agtaatcact tcagcttttc caccctcagt tgtaaccatg atgataggca tatcttcata
     5041 ttttttctct gctcttactt tttttaccaa ctccaagcca ttcatttctg gcatattcca
     5101 atctgtaatt aaaactttta catcttcatt tttagttaat aaatcccaag cttcaacgcc
     5161 atgctcagct tctaaaacat catcgtgtcc aagtcttgtt agggtatttt taataatcct
     5221 tctcatagta gaactgtcat caacaactaa caatttcaca atttcgtcct ttcaaagttt
     5281 ttatagtttt attttaccct ttttagcctt attaatcaag ctaaaaaatt ttaaaaaaca
     5341 gcattatatc atcttttact ta
//
LOCUS       DARBAR010000111         5320 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.111, whole genome shotgun sequence.
ACCESSION   DARBAR010000111 DARBAR010000000
VERSION     DARBAR010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5320
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.111"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..575
                     /locus_tag="SB815_001504"
     CDS             <1..575
                     /locus_tag="SB815_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG0907219.1"
                     /translation="LFIIKNTFEDIVMISKLAKENDFKFWFSNETNLSLQIVAPLHFN
                     IAIILSSLTNLNLIFMNFFELFDDKIYLRFEYDNIISDEQKLKLCELLNSNLSGFNLK
                     KIKKPIIKKDELKLDLNYSKMYAKLGLNTKDQQGLMAYLMNVFNELELVLCAAKIQTI
                     RQRTRNIFIFQKNEKLEHSEQKLVNLLISE"
     gene            580..2376
                     /gene="glmS"
                     /locus_tag="SB815_001505"
     CDS             580..2376
                     /gene="glmS"
                     /locus_tag="SB815_001505"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEG0907220.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            2379..>5320
                     /locus_tag="SB815_001506"
     CDS             2379..>5320
                     /locus_tag="SB815_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEG0907221.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPGIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFVLSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTFVIFEKRIY
                     GRTLENKA"
BASE COUNT         1896 a          647 c          980 g         1797 t
ORIGIN      
        1 atctttttat tataaaaaat acttttgaag atattgttat gatttctaaa ttagccaaag
       61 aaaatgattt taaattttgg tttagcaatg aaacaaatct tagtttgcaa attgttgcac
      121 cacttcattt taatattgcc attattttaa gttctttaac aaatttaaat cttattttca
      181 tgaatttttt tgaacttttt gatgataaaa tttatttaag atttgaatat gataatatta
      241 tcagtgatga gcaaaaacta aaactttgcg agcttttaaa ttcaaatctt tctggtttta
      301 atttgaaaaa aattaaaaag ccaatcatta aaaaagatga gttaaaatta gacttaaatt
      361 attctaaaat gtatgccaaa ttaggtctta atactaaaga tcagcagggt ttaatggcgt
      421 atttgatgaa tgtttttaat gaacttgaac ttgttttatg tgcagcaaaa attcaaacca
      481 taagacaaag gacgcgtaat atttttattt ttcaaaagaa tgaaaaatta gaacatagcg
      541 agcaaaagtt agttaattta ttaataagtg agtaaaaaaa tgtgtggaat cgtaggctat
      601 ataggaaata atgaaaaaaa acaaattata ctaaatggac ttaaagaatt agaatatcgt
      661 ggctatgata gtgcgggtat ggcagtgatg caagaaggag agcttagttt ttttaaagct
      721 gtaggaaaac ttgaaaattt ggcgaataaa tgcacggatt ttgaaagtca aggttatggt
      781 tttgctatag gtcatacaag atgggcaact catggtaagc ctactgaaat caacgcacat
      841 cctcatttag gacagtattc ttgtgtgatt cacaatggta ttatagaaaa ttataaagaa
      901 atcaaagata aacttgaaaa agaaggcgtg agttttttaa gtcaaaccga tacagaagtt
      961 attgtccagc tttttgaatt ttatgcaaga aatttgggag tttttgaagc ttggcaaaaa
     1021 accatcaaag aacttcgcgg tgcttttgct actttgttgg taacaaaaaa agatcccaat
     1081 catgtgtatt ttgcaaaaaa tgctgctcct ttgattatag gtaaaaatgc aaataaagaa
     1141 tggtattttt cttcaggtga tgcgcctttg ataggaagtt gtgatgaggt aatgtatctt
     1201 gaagatttaa gcttgggata cgcgagtaaa gatgagcttg tcgtttatga aaatgatatt
     1261 ttaaaatcac tttgtttttc taagctttca ggcgataagg cttatgcaaa aaaagacggc
     1321 tttcgttttt ttatggaaaa agaaatttat gaacaaagtc gcgtgatgag tgaagtttta
     1381 atggggcgta ttcaaggcga tgaagtcgtt tttgatgagc taaacaatga agatttaagt
     1441 caagtagatg aaatcacgct ttgtgcttgt ggaacaagct atcatgctgc aatggcaagt
     1501 gcttatttgt ttgaaagaat tgctaaagtt aaagctaaag tagaaattgc aagtgaattt
     1561 cgataccgtg aagcaattat aaaaaaagat tctttattta tcgttatttc tcaaagtgga
     1621 gaaacagcag acactttaga ggctttaaag attgcaaaag agcagggtgc taagactttt
     1681 gcaatttgca atgtggataa ttctaatata gtgcgtttag cacatctaag tcttttaact
     1741 cgtgcgggca tagaaaaagg agttgcttca actaaagctt ttgctactca ggttttaaca
     1801 ctttggatgc ttgctatttt tatggcacaa aaaagaaatt taaatgtttc tgctgaaatt
     1861 aaagcacttt tgcatactcc aaattgcgtg agtgtaaaac aggctttaca tgaaaaaatt
     1921 catcgtttat ccaagcgtta tttagatgga catggctttt tctttatagg cagagatgtg
     1981 ttttatcctt tggctttaga aggagctttg aaacttaaag aattatctta tcttcacgct
     2041 gagggttatc ctgcaggaga gatgaaacat ggccctattg ctttggctga ttctaagctt
     2101 tatactatag ctttaatgcc aaagcacatg ctttatgaaa aaacaaaatc aaatgttgaa
     2161 gagcttattg ctagggattc tacagtgctt agcatttcac ctttagaatt tgatttaagt
     2221 gatgatttta taaaaaccaa tgagcaagat cattatatgt gtgaattttt tgaaatgatg
     2281 gtcattactc aacttttggc gatggaaatt tccataagac ttggcaatga tgtggatatg
     2341 ccaagaaatt tggctaaaag cgtaacggta gaatagaaat gaaaaaattt ttttgtttaa
     2401 ctttagtttg taaacttttt gctttaagcg aatttgaact tcatcatatt gataaagtac
     2461 ataagctagg gtatagcgga gatactatta taataggtgt agccgatgat gcttttaatc
     2521 aagatcatat tagtttaaag gataagattt taaagtctac ttatcctact gatacagctg
     2581 ggaaacagct tatacctgat ttgaaaaaat caacacacgg aagtcatgta gcaggtatag
     2641 ctgttggagc aaagataggc gatagcaaac cttatggagt ggcttatggg gcaaaatttt
     2701 atggagctgg ggtgtttcca aatggctctt acactcaaat tcctgatatt tataattttt
     2761 tcaaagatgt gagtattatt aataatagct ggggtattaa tttttatcct tattttaatc
     2821 ttaaggcttc aaattctgga ttagtagatt gtactcaaac taatcaaggg acaagctata
     2881 atatctgtaa tactcctttg gaatatgtta tgaaagcaga taaggttgct aatgatatga
     2941 tgaggcttag caaggacaag ggagtattaa atgtatttgc tgctggtaat gaaggaattc
     3001 ttagccctgc tttgcatgcg attttaccaa gttatgatga atctttaaga gcttggttgg
     3061 ctgttggagc tttggatgca aatgagatta ctttagaatc agatgggact ttaataatta
     3121 aaagtcaagg tttggctgat tttagtaatg gttttaaggg agctacgaat ttttctttag
     3181 ttgctgctgg agtaaatatt aataatgttg attcaagcac taatgataag tttacaaaaa
     3241 aaagtggaac ttctatggca gcacctatgg taagtggaac agcggcactg gtcaagcaaa
     3301 atttcccctt tttggatggt aagcaaattg ctgatatact attaagtaca gcaaataaaa
     3361 attataaggc tccaaaattt actgttaaac aagtaaccga tggaacaaat caacctaaat
     3421 ttcttattgt gtatatttcg caagatccac ctgggataga agatgaaata aaacgggatt
     3481 taaaacagct ttacaatgga atacaagttc aagttaatgg acaatggatt gattatagtg
     3541 attatatttg ggataataga gatagtgcgc agtcacaaaa acttaatact tccactatta
     3601 gttctattaa tggagtagtt agagttgaga aagaagaatt atttggacaa ggaattttag
     3661 atgcacaaaa ggcgttaaaa ggactgagta ttttagatgc aaacagactc agtgatcagg
     3721 atgtattaaa atatgagcaa gaacctaata cagcttatta tactataaac actgcaggtt
     3781 atgatgctga attttctaat gatattagtc aaagaaaatg ggatgaaagt actcatttat
     3841 caagtgctat taataaacct acacatttag ctaatcttaa catagggtta tctaaagaag
     3901 gtgaaggtat tttgattatc agtggtcaaa atacttatga gggcgcaact ttaatcaaac
     3961 aaggagaatt aaagcttaaa ggaaaagtta aaaataatgc ttatgtagaa caaaaagcaa
     4021 tattaagcgg taatggtatt gtagggcaaa atttaaacaa taaaggcata gttagacctg
     4081 gaaatgaaga tttgaatgat ttaaccgtgc aaggaactta tactcaagaa ggagttgatt
     4141 ctaaattgca acttgatttt ggtaattata aaaattctaa actgattgca aaaacttatg
     4201 atattaagag cgggaattta gaatatattc ctttacctaa atactatatc ttaaataagc
     4261 cagtgaaaat taatttggga gatttggaaa aaagtttatc atcttttaat catgttttga
     4321 tacaaaatac ctatgcttta aattttgatt ttgttttaag tgatgattta gtgagtatta
     4381 ataaaacctt aataaaacct aatttaaagc caaatgctta cgaaattcct aatacaagct
     4441 tgggaaatgc tttaagacaa ttgcgatcta gggcagactt gagtcagact tatcaggaat
     4501 tttttgcttc tttagataat ggaatagatg taaagactaa attaaataga atagaaggtt
     4561 cagggtattt aagcactttt agtaatcata atcaatctaa tttaatgcaa aataatatgt
     4621 tatttaccct tcatcctctt aatattaata attttgcaca aaacaataat atcttacttg
     4681 ctagtactta tttacctaga atttttagca atgaagaata tttttggcat cttactccaa
     4741 gttataaata ctataaagat aaagattttt caggtcaaaa aacaggtgct aatatctctt
     4801 taggagaaaa tttctcatca ggctttttag cttatgcttt atctctttct agcgctaaat
     4861 ttaattttaa taatggtagt gatttgaaga gttataacat ggatttattg cttaattata
     4921 accatgattt agattttata aaaatattaa gtggattagg tataggtgta ggatttaata
     4981 ctcttaatcg ttttgtagta gagcagccaa ttgaaggcaa atataaaaca ttgcaaactt
     5041 cagcccagct tggtgtaact aaagatatta ttttaggtca agattttatt tttaatcctt
     5101 taatgtattt tacacatagt tttttttatc aagaagattt taaagaaaat aaaagtcctt
     5161 ttgctaaaaa ttatgaaagt ttaaaacatc atagcataaa tgcaaattta ggttttaatc
     5221 ttgctaaaaa tatagagcaa gatgattatc aagcttcttt ttctactttt gtaatttttg
     5281 aaaaaagaat ttatggaaga actttagaaa ataaggctag
//
LOCUS       DARBAR010000112         5278 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.112, whole genome shotgun sequence.
ACCESSION   DARBAR010000112 DARBAR010000000
VERSION     DARBAR010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5278)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5278)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5278
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.112"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..1132)
                     /locus_tag="SB815_001507"
     CDS             complement(<1..1132)
                     /locus_tag="SB815_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG0907222.1"
                     /translation="MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVE"
     gene            complement(1136..1960)
                     /gene="fabI"
                     /locus_tag="SB815_001508"
     CDS             complement(1136..1960)
                     /gene="fabI"
                     /locus_tag="SB815_001508"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEG0907223.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            complement(1964..2635)
                     /locus_tag="SB815_001509"
     CDS             complement(1964..2635)
                     /locus_tag="SB815_001509"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEG0907224.1"
                     /translation="MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFL
                     ENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            complement(2632..3834)
                     /locus_tag="SB815_001510"
     CDS             complement(2632..3834)
                     /locus_tag="SB815_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEG0907225.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKT
                     KAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            complement(3837..4835)
                     /gene="gap"
                     /locus_tag="SB815_001511"
     CDS             complement(3837..4835)
                     /gene="gap"
                     /locus_tag="SB815_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEG0907226.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            4895..>5278
                     /gene="nadD"
                     /locus_tag="SB815_001512"
     CDS             4895..>5278
                     /gene="nadD"
                     /locus_tag="SB815_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HEG0907227.1"
                     /translation="MKIALFGGSFDPPHNGHNSVILEALEKLDIDKLIIMPTYINPFK
                     QNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVI"
BASE COUNT         1720 a         1080 c          675 g         1803 t
ORIGIN      
        1 tttctacaag caaagcacct aatttatttt tagctatatt ttgtaaaata agttttatat
       61 tgctttcaaa ttcaaaatct atttgttcta aaattttaat ttgctcttct agaaaaaatt
      121 cttgttttaa ctcttcatta caaagtttag cgtaagaaaa aatatttgcc ataggctttt
      181 cataattccc aaactcatcc caaaaatttt tctcactaca ggctatacaa ccatgtcctg
      241 cggccactgg ccaagaagtt ttagcattga atttcacttt aggacagtta ttgtaagtat
      301 aaggtccttt acaacctatc ttaaataaac aagctccatt ctttgcagcc tcatcgtcaa
      361 aatgttcagc aaaaatccca ctttcaaatt ttgcctttct ttcacacata tcatgcaggc
      421 atttaccata agcccaaaca ggacgatttt gctcatcaag ttcaggtaaa actccaaata
      481 aagcaaaaaa acttaaagtc gcaatgatat ttatatcact tggaggacaa cctgggatat
      541 ttactacttt ctgacttaaa acttcactaa taccacaagt tttactagga tttggataag
      601 cagcctgaat accaccataa cttgaacaag tacccactgc aaagatagcc ttggctttag
      661 cggctagttt ttctaaaatt tcatagccac tctctccttg tgctcctata gtaagaaaaa
      721 aggtatcaat ggctgcaaca ccaccttcaa ccgctaaaat aaaatcttct tctaaaacat
      781 gctctaaaag ctcttcagct ttagtgccat ttgctgccat taaagtttca tgatattcta
      841 aagaaaaaaa atcaaaaata agctcatcaa aacttggcaa ctcagaacgc aacaaactct
      901 cactacaccc tgtacattca caaagatgaa gccatactaa ctttgtctta ggtgcgattt
      961 gaaaaaatct ttgagcaaga gctggaattt cattgcctaa agataaatgc ctagcaagaa
     1021 tttttacact ttcttcatta ataaccttat cctcttttaa agtagaattt tcaagttttt
     1081 taatgcgatc ttcaagtata ttttttaatt cttcattgct aagctttgcc attttttatc
     1141 ctttttgatt atcccaacaa agaacagttt gcccttcttc atttttttca acatcaccca
     1201 tacccatgat gttatatcct gcatcaacat aatgtatttc acctgtaaca ccatttgcca
     1261 aatcgctaag taaatacata gccgaatttc ctacatcttc tatactaaca ttgcgtttta
     1321 aaggagaatt gatttcattg tattttaaaa tcattctaaa atcccctatt ccacttgctg
     1381 ccaaagtttt aataggacct gctgaaatag cattaacacg gattcctttt acccctaaat
     1441 ctcttgccaa ataacgcaca gaactttcaa gtgcagcttt tgctacaccc ataacattat
     1501 aatgaggcac atatttaacc cctccaagat aacttaaagt caaaatcgaa cccttatctt
     1561 ttaaaatagg taaaactgca cgcgttaaag aaagtaaaga atacacagaa gtttgcatag
     1621 ctatatcaaa agcttctttt gaagtttcta aaaaagaatt ttctaaagct tcttttggag
     1681 caaaagcaac cgcatgcact acaaaatcaa tctcgcctaa atcttttttg attttttcag
     1741 cgatagaatc taaatgctcg ttattattta catcaagctc ataaacaaaa ttagaattaa
     1801 actcttgtgc tataggttct acgcgttttt ttaaagcatc atttaaaaaa gtaaaagcaa
     1861 gctcggctcc ttgatcaaaa catgcttttg ctatgccata agcaatagat ttattatttg
     1921 caacccctac aataaggcct tttttaccct tcataatcat cttttatcct ttgattaatt
     1981 ttataaaatt ttctactttt aaagctgcag agcctatcaa aactccacca caatgattta
     2041 cacttaaaat ttctttgata ttattttcat tcacacttcc accataaagc aaaggtactt
     2101 tggttaaact cgctaaaaat tcaagcactt tagcgatatc tgtactttgt gcgctcactc
     2161 ccgttcctat agaataaata ggctcataag cgatgatgag tttttcataa tttaaatcaa
     2221 taatttcaag ttgttttttt aaaaactcta aagtcttgcc tgaatttttt gtatctaaat
     2281 tttcacctat acaaaaaaca attttataac catgctcttt agcaaaatca aatttagcct
     2341 taataaattc ttcatctcct aaagctcttc tttcagaatg cccgattaag acacatttaa
     2401 tcccaaattc gtccaaatgt tcttttccaa gctcgcctgt aaaagcacca ttaacacaag
     2461 gataaaaatt ttgcgctcct tgtatgaagt tattttcatt ttctaaaaat gctatactag
     2521 gtggaaaaac gataatatca tcgcatttta cccccatagt tttatttaaa attttagcat
     2581 aaattttaaa gcttgctctt gtgtgattgc attttaaatt tgcagcaaag atcattcatt
     2641 ttccttagat cttaaagctt ttacacctgg aagttctttg ccttctataa gttcaagaga
     2701 agcaccacct ccagtagaaa taaaagtcat ttcatctgca tcacctgcac gcgcaaccac
     2761 atcagccgta tcaccgcctc caacaacaga agttgcatgt ccttcgctga tataatgact
     2821 cattttaatg ctaccttttg aaaatttatc aatttcaaaa acacccatag gtccattcca
     2881 ccaaatcgtt tgcgcatcag aaatcacctc cttaaaaagt ctcacactcg caggtcctat
     2941 atctaaaccc atccaaccat ttggaatttc ttgcgctgga acaaatttca tcggcgcatc
     3001 ttgtgagcac gcaggagcgg ctacaacatc tactggaaga taaattttca ctcctaaatt
     3061 tttacccttg gtaagaattt tattagcttc ttctaaaagt tcttcttcta aaagtgaatt
     3121 tcctatatca taacctaaag cttttaaaaa agtaaatgcc atacctccgc ctatgattaa
     3181 tttatctacc tttggtaata aatttgtcaa tgcttgaagt tttccactta cctttgaacc
     3241 tccaacaaca gcgacaaaag gacgtgctgg atgtttgata agattgcttg caaaatcaat
     3301 ttctttttgg agtaaaaatc ctgcgccttt gtgtttttca tcaaaaaatt tagtaatcgc
     3361 ctctacacta gaatgtgctc tatggcatac tccaaaagca tcattgatat aaacttgaac
     3421 catagaagca agttctttgg ctaaattttc atcattttta gtttcgcctt tttcaaaacg
     3481 caaattttca agaagtaaaa tttcacccgc ttttaaattc atagctttgg tttttgcatc
     3541 ttcgccgata acatcttttg ccataacaat ttctttatct aaaagtctag caagacgctt
     3601 agccacaggt tctaaagaat atttagagct aatttctttt ggacgcccta aatgagaggc
     3661 taaaatcaca ctacaaccat tatccaaaca atatcttatc gtaggaatag ctgatcttat
     3721 gcgtctatca tcagtgatat ttaaaaaatc atcttgagga acattaaaat cacatcttat
     3781 aaaaactttt ttcttagcta aatcaatgtc ttttatagaa ataatatcac tcatgattaa
     3841 gccttatttg caatatatac tgccatatct actagacgac ttgaatagcc ccattcatta
     3901 tcataccaag caattacctt gataaaatca tccgcaatca cttgagttaa atcacttgct
     3961 acaatagctc cataagaaca agtgataaaa tcgcttgaaa ctctttcatc atcatctacc
     4021 attaaaatgc cttttaaatt tgtagctgca gcttttctga aagcttcatt gatttcatct
     4081 ttgctaactt tacggcttag ttgtgcagtt aaatccacgc ttgatacatc aatcactggc
     4141 acacgcatac tttgtccatg aagcttgcca ttaagttcag gcataacaag tttcatagct
     4201 tttgctgcgc ctgtagaagt tggaatgata ttttgcgctg cagcacgaga acggcgttta
     4261 tctttagctt tagcatcaat aatactttgt ccatttgtat aagcatgtat tgttgtcata
     4321 agtccttttt ctatgccaaa attatcttgt aaaacacgac aaacaggacc taaacaattt
     4381 gttgtacaac ttgcattaga aataatgctt tcacccttgt aaagttctga atttactcct
     4441 aaaacataag taggagtatc atcttttgca ggagcactca tgatcacttt ttgtactccc
     4501 atatctataa attcttgaca ttttgccata gttaaatgcg ctcctgtgca ctctaaaaca
     4561 atttgtgcgc cgtgttttgc aaagtcaaga tcttttacat tgcgactttt aaatactttg
     4621 atttttttac catttaccac taaatcatcg ccttcactat caacactgcc tttaaattca
     4681 ccatgtactg tatcgtattt aaaaaggtat tttgtaagtt caatatccgt agtatcattt
     4741 atcgccacaa gctcaatatc atttctttct aagatgattc ttgcaacaca tctgcctatg
     4801 cgtccaaaac catttatagc aacttttaca gccatttaat ttccttttgc aaaatataat
     4861 gctaatattc tacaaaaaaa aggttaaaat tttaatgaag atagcacttt ttggtggcag
     4921 ttttgatcca ccacataatg gacacaatag cgttatttta gaggctttgg aaaaattaga
     4981 tattgataag cttattatta tgcctactta tatcaaccct tttaaacaaa actttagtgc
     5041 tgatgaaaag caaagattct tatgggttaa aaaactttgg ggacattttc caaaagttga
     5101 aatttgtgat tttgaaacca agcaaaaacg ccctgttcct agcatagaaa gtgttaagta
     5161 tctttataag ctttataatc ctagtaaatt ttatctttta atcggcgcag atcatttaga
     5221 aaaacttcat ctttggcatg attttgaaaa acttaattct ttagtagaat ttgttatt
//
LOCUS       DARBAR010000113         5185 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.113, whole genome shotgun sequence.
ACCESSION   DARBAR010000113 DARBAR010000000
VERSION     DARBAR010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5185)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5185)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5185
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.113"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            26..781
                     /gene="proB"
                     /locus_tag="SB815_001513"
     CDS             26..781
                     /gene="proB"
                     /locus_tag="SB815_001513"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEG0907228.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            855..1772
                     /locus_tag="SB815_001514"
     CDS             855..1772
                     /locus_tag="SB815_001514"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEG0907229.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKIILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            1735..2388
                     /locus_tag="SB815_001515"
     CDS             1735..2388
                     /locus_tag="SB815_001515"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEG0907230.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCKQIRNGKIDENFAIYALEQIN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            2385..3170
                     /locus_tag="SB815_001516"
     CDS             2385..3170
                     /locus_tag="SB815_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEG0907231.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            3176..4012
                     /locus_tag="SB815_001517"
     CDS             3176..4012
                     /locus_tag="SB815_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEG0907232.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KL"
     gene            4073..4498
                     /locus_tag="SB815_001518"
     CDS             4073..4498
                     /locus_tag="SB815_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HEG0907233.1"
                     /translation="MFEDMHPSIMLATMAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLGVNDELEAIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAVQKKELQEHLNIHLSELKQALQNNIKKI"
     gene            4509..5021
                     /locus_tag="SB815_001519"
     CDS             4509..5021
                     /locus_tag="SB815_001519"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEG0907234.1"
                     /translation="MSKLFFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVAILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            5024..>5185
                     /locus_tag="SB815_001520"
     CDS             5024..>5185
                     /locus_tag="SB815_001520"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The delta subunit is part of
                     the catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit delta"
                     /protein_id="HEG0907235.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     NEIKKERKME"
BASE COUNT         1998 a          626 c          890 g         1671 t
ORIGIN      
        1 tataaaaatt tttcaaggaa taagcatgaa aagaatagtt gttaaagtgg gttctcatgt
       61 gattagcgaa gaaaacactt taagttttga gcgtcttaaa aatttagtcg catttttagc
      121 taaactcatg gaaaaatatg aagtaatttt agtaacctcg gcggctattt cggcaggaca
      181 caccaaacta gatatcgata gaaaaaacct tattaataaa caagttttag ctgctattgg
      241 acaacctttt ttaatcagtg tttataacga gcttttagcc aaatttaaca aactaggcgg
      301 acaaatttta cttacaggca aggattttga ctctagaaaa gctactaaac acgcaaaaaa
      361 tgctatcgat atgatgataa atttaggaat tttgcctatt atcaatgaaa atgacgctac
      421 agctatagaa gaaattgtct ttggtgataa tgatagttta agtgcttatg ctacgcattt
      481 ttttgatgcg gatttgcttg tgattttaag cgatattgat ggattttacg ataaaaatcc
      541 tagtgaattt agtgatgcaa agcgtttaga aaaaatcact catattaaag aagaatggct
      601 acaagcaacc ataaaaacag gtagtgagca cggaacaggt ggtatagtaa ccaaacttaa
      661 ggcagctaaa tttttacttg aacacaataa aaaaatgttt ttagcaagtg gctttgattt
      721 aagtgtggca aagacatttt tattagaaga taaacaaata ggtggaactt tgtttgagtg
      781 attaatttat taaattctct tttaaaatca aataagctat aattaaaact tttaatttca
      841 cacaaagcga aaaaatgaaa aaaattattt ttatgggcac tccatcttac gcaacttgta
      901 ttttaaaagc actagtagaa aatgaaaatt ttaaactcgt agcacttttt actcagcctg
      961 ataaagccgt aggtagaaag caaattttaa ctccaagtga tactaaggct tttttaagtc
     1021 aaaattatcc tagtattcct atttttactc caagttcttt aaaagataaa aatattataa
     1081 gagagattaa ggatttaaat cctgatttta tcgtggttgc tgcctatgga aaaattttac
     1141 ctaaagccat tttggattta gcgccttgtg tgaatttgca cgcttcttta cttccaaaat
     1201 accgtggtgc cagtccgatc caaagtgcga ttttaaacaa agatgaaaaa agtggagttt
     1261 gcaccatgct catggaagaa gggcttgaca caggtgctat acttgaaagc ttagaatgtg
     1321 atataaaaga taaaaattca agtgaagttt ttgaactttt agcaaatttg gccgctaaga
     1381 tcatcctctc tactctttta aatttcgata aaatcacccc taaaaaacaa gaggaaagtc
     1441 tagcaacact ttgtagaaaa atcaaaaaag aagatgggct tataaatttg caaaatgcaa
     1501 gagaacttta tcaaaaatat ctagctttca ccccttggcc tggagttttc ttggaaaatg
     1561 gacttaaatt cttagaactt gaacttgtgg atgaattaaa acaaaatgct aagatgggtg
     1621 aaattttaga attagaaaaa gaaagttttt tgcttgcttg caaacaagga gttttgcgta
     1681 ttaaaaaact tcaagaaagt ggaaaaaaag ctcttgatgg taggacttat ttaaatggaa
     1741 aaaggcttaa aagtgaagat agtttgtgtt gaaagtatag actcaactca tcttttttta
     1801 tgcaagcaaa tacgcaatgg aaagattgat gaaaattttg ctatttatgc tttagaacaa
     1861 ataaatggag ttggaagtag ggaaaattct tggcagagct ctaaaggaaa tttacatctt
     1921 tctttctgta ttaaagaaga agacttgcca aaagatttac ctttagcttc tgtgagtatt
     1981 tattttgctt atttacttaa agaagtttta caagaaaaag gttctaaaat ttggcttaaa
     2041 tggcctaacg atctatattt agatgataaa aaagctggag gggttataag tgctaaaatt
     2101 tcaaatttta tcataggcgg tatgggttta aatctgaaat ttgcacccca aaatacagct
     2161 ttatgcgata tagaaatttc gcttaaagat ttagtgagtg agtttttgca aaaagtagaa
     2221 aaaaaaattt tatggaagaa tatttttagc aagtatatgt tagaattcga aaaatcaaga
     2281 aaatttagcg tccatcatga aggtaaagtt ttttcacttg aaaattcttt tttgtatgaa
     2341 gatggttcaa ttttactagg cgataaaagg gtgtatagtt taagatgagc gaaattatta
     2401 caatagcaaa tcaaaaaggt ggagtaggaa agactacaac agcagtaaat ttagccgctt
     2461 ctttggctgt ggctgaaaaa aaagtacttt tgattgatgt tgatccgcaa gctaatgcga
     2521 ctacaggact tggttttaat cgtaataatt atgagtataa tatttaccat gtttttatag
     2581 gaagaaaaaa gctttcagat attattttaa aaacagaatt gccacaactt catttagctc
     2641 cttcaaatat aggtcttgta ggtatagaac aagagcttgc taaaggtgaa aataatgaga
     2701 aaaaaatgct gcttaaaaat caaattcaag aagtgattga tgagtatgat tttattatta
     2761 ttgattctcc gcctgctctt ggaagtatta ctataaatgc ttttgcagca agtgatagtg
     2821 taattatccc tatacagtgt gaattttatg cgctcgaggg tgtagctatg gttttaaata
     2881 caattaaaat tatcaaaaaa actattaatt ctaaactcag ggttcgtgga tttttaccga
     2941 caatgtatag ctctcaaaat aatctttcta aagatgttgt agatgatttg aaacaaaatt
     3001 ttaaaaaaca actttttact attaatggaa acgaagatga ctttattgtg atccctcgca
     3061 atgtaaaact tgcagaaagt ccaagttttg gaaagcctat aattctttat gatattaaat
     3121 caccaggttc tgttgcttat caaaatttgg cgtattctat attaggataa ttataatggg
     3181 gttaaataaa gataggggtt taagtagttt aatcagtgat atggatactg tttatagtaa
     3241 agaattgggt tttgataaaa atcaaagcac tatgatagaa attgatcaaa tttcacccaa
     3301 tccatttcag ccaagaaaga attttgatca agaagcttta gatgaacttg ctaattctat
     3361 caaagaattt ggacttattc agcctattat tgtatttaaa aaaaataata aatttatttt
     3421 aattgctggg gaacgtcgct taagagcagt gaaagcatta ggaaaaaaag aaattctagc
     3481 ttttattgct gatattgatg agaataagct tagagaattg gctcttattg aaaatataca
     3541 aagagagaat ttaaacccta ttgagcttgc taattcttat aaggatttaa tgcaagttca
     3601 taaaattact caagagaatt tagcagaact tattcataag tctcgtactc aaataacaaa
     3661 tactttaaga cttctgaatt tagatattag aactcaagag ttgattgctt ctggaaaaat
     3721 ttctcagggt catgctaaag ttttggttgg tttagatcaa aaagatgaaa aaatgttggt
     3781 tgatagcata ataggtcaaa aacttaatgt tagagatact gaaaaaatag ttaaaaaaat
     3841 aaaaaataat gaaagcttac ctaatcaaga atttgaagat gaaataaaaa aattaaaaca
     3901 aatactaaat cgctttggat ttgactgcaa aaataaaaat aatgattttg taattcattt
     3961 agaaaatatt gataaaatta aaaaattaat caaaatgctt gaaaagcttt aaccaaaatc
     4021 ttagcttttt tatggtaaaa tagtccttca aaaattctaa ccaaggagaa ttatgtttga
     4081 agatatgcat ccttccataa tgcttgctac tatggctatt tttttagcta tgatagttat
     4141 tttaaatagt atgctgtata agccgctttt aaaatttatg gatgaaagaa atgattctat
     4201 aaaaaatgat gagaataaag taaaagaaaa ttctcaagaa gttttaggtg tgaatgatga
     4261 attagaagct attcatatta acactagaga agaaattcaa aaaattaaac aaagtgctat
     4321 agctgctgct aaagaagagg cagagcaaat tcttagaagc aagaaagaag aattagaaag
     4381 aaaaatggcc agtttttatg cagatttagc cgttcaaaaa aaagagttgc aagaacattt
     4441 aaacatacat ttatctgagc ttaagcaagc tttgcaaaat aacataaaga aaatttaaga
     4501 ggagagaaat gagtaagtta ttctttatta tatttttgct acctttgtat gcttttggtg
     4561 catcaaacgg tagtggagaa tatgatatta ttccaaggac tattaatttt ctaatttttg
     4621 tagctatatt gtattatttt gttgcaactc catttaaaaa tttttacaaa aaccgtattg
     4681 taaaaatttc ttctaaactt gatgaaattc aaaaaaaact tttagaaagt aaagctaaga
     4741 aattagacac gatgaaaaaa cttgaagaag ctaaggcaag tgctgctgcc gctttaatta
     4801 cagcaaaaaa agaagctgaa attttagttc aaaatattaa gaaagagact caagatgagt
     4861 tagatttact tcaaaaacat tttgaggaac aaaaagatta tgaatttaga aaaatggaaa
     4921 aagaattagt atcaaatact ttaaatgaaa ttttttctga tccaaatatg acattaaaac
     4981 agagtgaaat aatagaactt atgatgaaga aggtatctta aatatggaaa atataattgc
     5041 aagaagatat gcaaaagcga tagcttcaag agctgatata aatgattttt atcagaattt
     5101 gtgtatttta aattctgctt ttgttttgcc aaaatttaaa aatattatag aatctaatga
     5161 gattaaaaaa gaaagaaaaa tggaa
//
LOCUS       DARBAR010000114         5070 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.114, whole genome shotgun sequence.
ACCESSION   DARBAR010000114 DARBAR010000000
VERSION     DARBAR010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5070)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5070)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5070
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.114"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(8..745)
                     /locus_tag="SB815_001521"
     CDS             complement(8..745)
                     /locus_tag="SB815_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0907236.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELTIAKREWFKSKWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YVYIPDFKTLKSQFVNIKNKNYECSKI"
     gene            complement(738..1964)
                     /locus_tag="SB815_001522"
     CDS             complement(738..1964)
                     /locus_tag="SB815_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907237.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGTSTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLLVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFAKELALELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKHDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            2092..2676
                     /locus_tag="SB815_001523"
     CDS             2092..2676
                     /locus_tag="SB815_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEG0907238.1"
                     /translation="MQTIDQIFQTQIDIKKSTFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNTTIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            complement(2720..3103)
                     /locus_tag="SB815_001524"
     CDS             complement(2720..3103)
                     /locus_tag="SB815_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907239.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQIEDYSSSGDSDFMDMLNK
                     ADEKSSGDALNSSSSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLTQQGANEQSKNNTLLNDLLNAI"
     gene            complement(3178..3513)
                     /locus_tag="SB815_001525"
     CDS             complement(3178..3513)
                     /locus_tag="SB815_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907240.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(3503..>5070)
                     /locus_tag="SB815_001526"
     CDS             complement(3503..>5070)
                     /locus_tag="SB815_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG0907241.1"
                     /translation="KNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFLKILS
                     GEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKLYMSE
                     EFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADKFKVL
                     LAQVLFLGADALFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKICTRIL
                     DVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANASKAKQ
                     ATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEIKGIGKAYDKQLFSNLEL
                     KIEKNDKIALIGANGVGKSTLAKIIAHAISPDSGSIHLGATIELGYFPQDTSNLICEN
                     LKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLMLERPN
                     FLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGKLTDF
                     RGTYQEFLGENDG"
BASE COUNT         1837 a          890 c          619 g         1724 t
ORIGIN      
        1 atgggggcta tattttagag cactcgtaat ttttattttt tatattaaca aattgacttt
       61 taagtgtttt aaaatctgga atataaacat aaccgctaag cgtatctata acgatacaaa
      121 gagcatgctt ttttgataac aaacgtataa tgcaatctga attattcttt gctaaagttt
      181 tttcataggc ataattggca ttttttaacg gagaatacac tctgcccatt tcatcaaata
      241 ctaatctagt aaatcctgaa caagatcctt tgaattcaac cttttctatt ccgaatcttt
      301 ttgtaagatt aaatctttgt gtagtttttt catcatcttt actaataact ccactttgac
      361 ctgaattcat taatttgtta tgattgatta catcaacagc aatttctcta tctatattga
      421 tttcagtttt acctaaatta gcatttccat cgccattttt atccaagaaa atagtatatg
      481 tttgatcata acctgtggca gctgatttta taaaataaat ctgccattta cttttaaacc
      541 actctctttt tgcaatagtc aactcatcaa ctcttatacc ttcttgcatc atggctaaac
      601 tttgggtata ttggatatca ttaagaattt gtatcgcacc ttctagtaga ttgtcttttt
      661 ttaagtaaag actgcctaaa ttaaaaacta tacctaaaat gagaattata aacacaaatt
      721 ccaacaaact gaaagcttta atcatagttt aaaatctgat atactttttc atattttcca
      781 agttttactt taacaatttt tttgtccata tcatgcttat cggcttgttt taaagctttt
      841 aaataaaact tattgctatt ttttattcca taaaatcgca atcttttttg caaacttggg
      901 gctgttgcaa gctctaaaac atcttgtttt tttaattcta gtgccaattc tttagcaaaa
      961 tgataattat tggcaaaatg acgatttgga ttgtttataa aataatacaa taattgatta
     1021 gcgacgatta aaaagtaaca aaatatcaaa aaaattatag aacattctat aaagatttta
     1081 taccttaatc gaaaaactag taatctcacc ctataacttt gcattaaagt ttttataagc
     1141 aaaggagtgc aaataacaca aaaaggcaaa aaatcatcta aaaaaagttt ttgtcttaaa
     1201 gaaagcaaca aacaaaatac aaatgttacg ctcattaaaa accataataa atttttatat
     1261 ttttgaaaag tcaaacgata aatagtataa aaaaaataca caaaaaccaa aggagaaaaa
     1321 catgcagcaa aaattcctaa ggtatctaaa aaataacctc ttggacgacc acctgtatca
     1381 aaaccataaa aactgatact cgctccaaac aaaacaagag ataaggtaaa taaaatagca
     1441 tttcttttat aaatcccaaa aaagaaaaaa gttaaaaata aaatattaaa agatttatca
     1501 acaaataata ctataatcaa taatatataa aaaagccatt ttttttcata ttcgtaagca
     1561 cataatatag caagggttaa aaaaatcacc aaagatgcgg cattaaccag taaagcactt
     1621 gcaacagtac ccggcaataa aacaaataac aataaagaaa aaaaagcatc aattttagtt
     1681 ttagtatatt ttaaagctag caaatacaaa agcaaacaac ttaaaaaatg aaaaaataaa
     1741 aaaggaagcc ttaaaccaaa atcattttgc ccaaaaataa aagttccaaa atgagatata
     1801 taataaagca aactatgaga aaaaataagt gatttaccct gctcaccaaa ataaatatca
     1861 gcttcatcag cactaatact cagtgttgaa gttccataaa gcaaagccaa caaatcaaga
     1921 ctaagtaaaa tgatgataag tttataattt ttgatttttt ccataatgaa aattttacaa
     1981 aattaaactt aaaatatcaa tgcaaatcat acaaatatca aatatcttaa aaattaacat
     2041 caaattgatt ttagttttta taagtataat tttaaataaa agaaggcaaa aatgcaaact
     2101 attgatcaaa tttttcaaac acaaatcgat attaaaaaat ctactttctt atcttttctt
     2161 tgccctttta aagattttaa atttttaata gaaacactaa aaaaagaaca tccaaaagcc
     2221 gttcattttg tctatgctta tcgtgtttta aatgatttca atcaaattgt agaagataaa
     2281 agtgatgatg gagagcctaa aggaacttct ggaatgccaa ctttaaatgt tctaaggggc
     2341 tatgatctta tcaatgcggc tttaatcact gtaagatatt ttggcggtat aaaacttggt
     2401 acagggggac ttgtaagagc ttatagcgat gcagcaaatg ctgtgataaa taattcttct
     2461 ttactttcat tcgaattgaa aaaaaataca accattgcta ttgatttaaa aaatttaaat
     2521 cgttttgaac attttttaaa aacttattct tttaatttca caaaagattt taaggattgc
     2581 aaagctatat tacatatcaa attaaatgaa aaagaggagc aagaatttga aattttttgt
     2641 aaaaattttg caccttttga aatagagaaa ttataaattc ttgcaagtaa atataaaagc
     2701 tccaaaatgg agcttttgat taaattgcgt tcaataaatc atttaacaaa gtattattct
     2761 tactttgttc atttgcacct tgttgtgtaa gatcattatg aacgctagca ctttgagctc
     2821 tcatagacag ctcgccttca ttttgtctaa aacgataagc gtaaacattt gacatttgag
     2881 cataattact taaatttgaa tttgagtttt gcgcattgct ttgaaaacta ctgctagaat
     2941 ttaaagcatc tccgcttgac ttctcatccg ccttatttaa catatccata aaatcagaat
     3001 ctccagatga agaataatct tcaatctgtt tatccacctg tttatactga ccactaatag
     3061 catcgtattc atacgagcta atcgttctat aatttacctg catagttttc tcctttcaaa
     3121 atatgcaaaa actatacaag caaaaagcgt tcctttttat gtaaaaatta atgtttttta
     3181 atcatggtga gtaggcaaat gctccacatc aagctcattg ttggctataa attcctcctt
     3241 ggctttttta cagttttcat cacgcatttt gcggtattca ttgcgaatgg tgatttcttt
     3301 atcgcttaga ggtctatctt ctaaaaaact gatatgaaaa taagtatcat cgctctttga
     3361 ataagtttta taaaaatcta tatagtcaaa ataatccttg ccattatcaa actctacgac
     3421 ctcttctata taaatcgtag gtccaaaacc cttgtgattt tgcgtatagt gcccaaaacc
     3481 tgcgctgtat tgaattctaa atttagccat cattttctcc taaaaattct tgataagttc
     3541 cacgaaaatc cgtaagctta ccattttcta aatgccaaat tctattagca aaagcagaaa
     3601 ctaactccct atcgtggctg atacaaagca ctacaccttt gaaattatac aaagcttcac
     3661 ctagtgcaat aatactttca agatctaaat ggttatcagg ctcatctaaa agcaagaaat
     3721 ttggacgctc tagcattaaa cgagaaagca ttaaacggtg tttttcaccc ccacttaaac
     3781 ttgctgccat cttttcttga tcactgccac taaaaagcat tctacctaaa cacttacgga
     3841 tttcatctag atctttaaat ttttcactca tcaaccattc ataaagtttc aaattttcac
     3901 aaattaaatt acttgtatct tgaggaaaat atccaagctc tatagttgcc ccaagatgta
     3961 tggatccact atctggactt atagcatggg cgatgatttt tgccaaagta cttttgccca
     4021 caccatttgc cccaatcaaa gcgattttat catttttttc tatttttagc tccaaatttg
     4081 aaaacaattg tttatcataa gccttgccta tacctttaat ttctaaaact tcattaccta
     4141 tttcacgatt agttctaaat actatactag gatctctacg gcttgaaatt ttaatctctt
     4201 caagctctag tttttcaagc gccttagcac ggcttgtggc ttgttttgct ttagaagcat
     4261 ttgcactaaa acggcgaatg aaattttcta attcttctct ttcttttaag gttttatcgc
     4321 gtttaagctc agcttgtttt gccaaaagcg ttgaagccat ataccaatca tcataatttc
     4381 ccgcaaaatc acgaatttgt ttaaaatcca catccaaaat ccttgtgcaa attttattta
     4441 aaaaatgcct atcatgagag atgacaacca aagttccttc atgtcttaaa agttcatttt
     4501 caagccaaga aatcgcctct aaatcaaggt tatttgtagg ctcatctaaa aaaagcgcat
     4561 cggcacctaa aaacaaaact tgagctaaca aaactttaaa tttatccgca ctttgtaagg
     4621 tgctcattaa agcatcgaaa tctttaatct ttaaagaact taaaattttt tcacaacgtg
     4681 tttcacaatc ataatttgga tcttcttcag ccgttattat ctcaagctca cctaaacgct
     4741 cattgatctc atcagtaaat tcctcgctca tataaagctt ttctttttct tttaaggcct
     4801 catataaacg cttatttgca cacatcactg catctttgat ggtgtagttt tcaaaagcaa
     4861 attgatcctg tcctaaaact gcgattttca agccttcatc aaatactatt tcaccactac
     4921 ttgactcaat ttctcctgaa agaattttca aaaaagtcga ttttcccgca ccattagcac
     4981 cgataagtcc gtatctttgt cctcgaacaa gttttaaatt aacattttca aataaaagct
     5041 gatttgcaaa acgcatagta agatttttta
//
LOCUS       DARBAR010000115         5010 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.115, whole genome shotgun sequence.
ACCESSION   DARBAR010000115 DARBAR010000000
VERSION     DARBAR010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5010
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.115"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..1968)
                     /locus_tag="SB815_001527"
     CDS             complement(<1..1968)
                     /locus_tag="SB815_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HEG0907242.1"
                     /translation="MKYYSTSKKLIANARNFYTISLYKKNLKIKKDDLFFGWGRKKSG
                     LKAINLAKKHKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLL
                     NTYEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDTSL
                     EFGLAKDFKTLDMIKDAIKENSKSKIYIKIHPDVLSSKKQSDLDLNSLPKECILITEN
                     FNPIALLEFFDKVYTKTSGMGFEALMQGCECVCYGMPFYAGWGLTKDELECKRRVRKR
                     SLEEVFYAAYMLYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKVNSNKLFMLGFTLWKR
                     HFIKPFFKAKDNEIIFLNSLKSLARYKLKENDKFFIWGKRIDYNALKTTLIKKAQDEN
                     LLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFD
                     ENMLNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGF
                     GLSTLDLLKEVRAKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSA
                     IKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRIRKLSLEELV
                     AGALIIYPRYINPKTKTLCEIEVCLDIMLNLQ"
     gene            complement(1965..2477)
                     /locus_tag="SB815_001528"
     CDS             complement(1965..2477)
                     /locus_tag="SB815_001528"
                     /EC_number="2.7.1.224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine diphosphoramidate kinase"
                     /protein_id="HEG0907243.1"
                     /translation="MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDEL
                     REILGHYAYDKQGRIDMALKRAKFAKFLNDQGMIVIVTTISMFNEIYDYNRKQLKNYY
                     EIYIECDMHELMQRDQKGLYTKVLNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEK
                     VEFIIKKLAL"
     gene            complement(2467..3228)
                     /locus_tag="SB815_001529"
     CDS             complement(2467..3228)
                     /locus_tag="SB815_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HEG0907244.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNEVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFMLKCIEEKQ
                     DLIISYADIVYFQDCVQKLINAKEELAIVVDKSWCKLWSKRFTNPLEDAETLKMTNGY
                     IIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK"
     gene            complement(3230..3832)
                     /locus_tag="SB815_001530"
     CDS             complement(3230..3832)
                     /locus_tag="SB815_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEG0907245.1"
                     /translation="MFIGITQRLICNESYHEERECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSYYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLEEKIPLLGICR
                     GAQMIAHYFNSHISPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCLAKDN
                     TIEAFKHKYENIFGIMWHIERENGLNNIQILKEWFSLIKE"
     gene            complement(3823..>5010)
                     /locus_tag="SB815_001531"
     CDS             complement(3823..>5010)
                     /locus_tag="SB815_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907246.1"
                     /translation="IKRLEFSLLELTNKIINPRSGLYLKDIQKAYKLKERYDGIINSN
                     FSLIDKIYWLIEECKRYGTLPFAGVARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLN
                     TVSKNLSKQTNHLNFHNKDQFLKDFGHLRAGTYNILSPRYDEDFELYFDVDQKDSKVY
                     LQNKTFVFSEEKTKVLNALLREHGLEINACEFFDFLKQAIEGRELVKFEFTRLLSKAI
                     VYIEELGKYYGIEKEDLAHLDIKSILNLYSSLYSINPKEQFVEEINRNKKEYELTQAI
                     KLPSLLCNADEIFSFYNHSIIPNFITQKSITAFTAKENDKDLEGKIVLIYAADPGYDY
                     LFTKNIAGLITCYGGANSHMAIRASELGMPAVIGVGEENFEKYLKAKKINIECESEQI
                     FCL"
BASE COUNT         1701 a          847 c          565 g         1897 t
ORIGIN      
        1 ttgtaaattt agcattatat ctaaacaaac ttcaatttca cataaagttt ttgttttagg
       61 atttatatat cttggatata tgattaaagc acctgctaca agctcttcta ggcttagttt
      121 tcttattctt ctttcacatc tatatttatc ttttgttaaa ccccagcccg cataaaaagg
      181 cataccataa gtaaaaactt ttttagccct taaaagagca tcaaaaccac ttgtagaagt
      241 aatagtgtga atttcatcag caatttttat agcgctatca atactgcaat cttttacaat
      301 ctcatcacaa aattccaaga tgagtgtttc atcttttaaa cctacacggt taccgcttaa
      361 cacatcagga tggggtttaa agatgatata agcatcttga tttttagcac gcacctcctt
      421 aagcaaatca agagtagata agccaaaacc ccctaaaatc atcgaagcat catcttcaac
      481 ttgagcaggg attaaaataa tcttttgtcc tattttggca ttgattttta agtcttcatg
      541 ctttaagcca ttgtattttg aaaagcggtt ctcaagtaag atttttataa tattttttgc
      601 cctatttagc atattttcat caaaaatttc gttttgcaaa agctcttcta atttacttgc
      661 tttatttgga tctatgtaaa gtcctttatc atcaacaatt aaagaaaaag ggcgcgtaag
      721 atcagaacct aaagagattg agcgaataaa tccatcttca actaaagaaa ttttgggagt
      781 aaaatggagc aaattctcat cttgcgcttt ttttataaga gtagttttaa gagcgttata
      841 atctatcctt ttaccccaaa tgaaaaattt atcattttct ttaagtttat atctagctaa
      901 agattttaaa gaatttaaaa aaataatttc attatcttta gccttaaaaa aaggcttgat
      961 aaaatgcctt ttccataggg taaagcctag cataaaaagc ttgttagaat ttaccttttc
     1021 tatatcttta tattttgcta aagtttgaat agtatcaaaa atattacttt tttgatttaa
     1081 ataaggatta aaatactcag cataaagcat ataagcggca tagaaaactt cttctaaact
     1141 tctttttcgc actcttcttt tacactctaa ttcatctttt gttagacccc agcctgcata
     1201 aaaaggcata ccataacaaa cacactcaca tccttgcatc aaagcttcaa aacccatacc
     1261 agaagtttta gtataaacct tatcaaaaaa ctcaagcaag gctatgggat taaaattttc
     1321 agtgattaaa atacattctt taggtaagga atttaaatct aaatcacttt gttttttact
     1381 gcttaaaaca tcaggatgga tttttatata aattttagat ttagaatttt cttttatggc
     1441 atcttttatc atatcaaggg ttttaaaatc tttagcaagc ccaaattcaa gcgaggtatc
     1501 attagccgtt tgagtgatga ttaaaaccct tttttcatct ttttgaaaat aatcatctgg
     1561 gatatcaaga ttgttattat acttgctaat tttatatttt ttgataagct ctatagcttt
     1621 tttagcttgc ttgatttctt catctttaaa ttcataagta tttaaaagat tttcaagctt
     1681 tgaaggcatt gttgcatcat aataaatgcc tatatcatct ttaaccatag aaaaacttgg
     1741 gctattttca acccctaagt ttaatgagcg gataaatcca tcttctaaaa gtatgaattt
     1801 agccttatgt ttttttgcta aatttatagc ttttaaacct gattttttgc gtccccagcc
     1861 gaagaaaaga tcatcttttt tgatttttaa atttttctta tacaaagaaa tagtataaaa
     1921 atttctagca ttagcaataa gtttttttga tgttgagtaa tacttcacaa tgccaatttc
     1981 tttattataa attcaacttt ttcttctaaa ttatttcgac aagaattatt gatcactaaa
     2041 tcagcctctg gtttatcaaa ttctatatca acaccaacta cattatcaat ttctttattt
     2101 aaaactttag tataaagccc tttttgatct ctttgcatta attcatgcat atcgcattct
     2161 atataaattt cataataatt ttttaattgc tttctattgt aatcataaat ctcattaaac
     2221 attgaaatcg tagtgacaat aactatcata ccttgatcgt ttaaaaattt tgcaaattta
     2281 gctcttttca aagccatatc tatgcgacct tgtttatcgt atgcataatg tcctaatatt
     2341 tctcttaact catctccatc gagataaata agatttttat attttagttt taatttttca
     2401 tacaaagctt gacctatagt tgtttttccg cttccagcta aaccagtaag ccaaataata
     2461 taaggactat ttatcaattt gcacctctaa atcactcata aaatcaattt cacaccaatt
     2521 gccatcaatt tccactgctt ttgcgttgtt gtatttttca atcaaagcct gcaaaaaact
     2581 tgtcatatac atattttcaa aatttttatt atcatataaa atatctcggt caagcatttc
     2641 ataaaaagca ataacttcag aaagaaattg ataagaaaat ttaaaaagtc ctatatattg
     2701 agcttctatc tcatcatagg cattagcttt ttttccaagt tctataatat aaccatttgt
     2761 catctttaat gtttcagcat cttctaaagg atttgtaaag cgtttgctcc aaagcttaca
     2821 ccaagactta tcaactacta tagcaagttc ttctttggca tttataagct tttgcacaca
     2881 atcttgaaaa taaacaatat ccgcataaga aataatcaaa tcttgttttt cttcgatgca
     2941 ttttaacata aaatctttag cgcaaaaaaa agtatgaacc atattggttt tatcatattt
     3001 tgaattaata aaaaaatgct caatatcata tttattaaga taatttttta gcacttcgtt
     3061 taaatatcca cccacaacag ctatttcatt tatacctgct gattttaaag cttcgatttc
     3121 ataatctatt atttttttat tcttatactc aaccatacac tttggttgat cttttgttaa
     3181 aggcatcagc cttgatccaa aacctgctgc taagataatt gcattcatat tattccttga
     3241 ttaaactaaa ccactctttt aaaatttgaa tattattaag cccattttct ctttcaatat
     3301 gccacattat accaaaaata ttttcatact tatgtttaaa agcttctata gtattatctt
     3361 ttgctaagca aagttctaca agatcttcgc ctaatttttc aatagcaaaa ttatgaaaag
     3421 aattgcttat aaatttttct tttgagaaaa atacttcatg tttgcctata tgattttcac
     3481 aaggacttat atggctgtta aaataatgag ctatcatctg agcccctctg caaattccta
     3541 aaagtggtat tttttcttct aaacaaattt ctataacttg cttttcatat aaatctctct
     3601 ttttagataa aacattagga ctataaaaac ttaaatcatt gccaccgctt aatatcacag
     3661 cttttattag atgtttataa taagaaaaat ctatttcata gctaagagga agaggagtaa
     3721 aatttttaaa taaatcttta ttaaataatt ttccccaatc caaagccaaa cattctcttt
     3781 cttcatgata gctttcgttg caaataagcc tttgagtaat acctataaac aaaatatttg
     3841 ctcactttca cattctatat ttattttttt agcttttaaa tatttttcaa aattttcttc
     3901 tccaactcct ataacagcag gcattccaag ttctgaggcg cgaatggcca tatgtgaatt
     3961 agcaccccca taacatgtaa taagtcctgc tatatttttt gtaaataaat aatcatatcc
     4021 aggatctgct gcataaatta aaacaatctt tccttctaaa tctttatcat tttctttcgc
     4081 cgtaaatgca gtgatgctct tttgtgtaat gaaatttgga ataatactat gattataaaa
     4141 agaaaaaatt tcatcggcat tgcaaagcaa agaaggaagt tttatagctt gtgtaagttc
     4201 atattctttt ttattgcgat taatttcttc tacaaactgc tcttttggat ttatagaata
     4261 aagactagaa taaagattta aaatgctttt tatatcaaga tgagccaaat cttctttttc
     4321 aataccataa tatttaccta attcttctat ataaactata gccttagaaa gcaatctagt
     4381 gaattcaaat ttaacgagct ctctaccctc gatagcctgt tttaaaaaat caaaaaattc
     4441 acaagcatta atctccagcc catgttctct aagtaaagca tttaaaactt ttgtcttttc
     4501 ttctgaaaaa acaaaagttt tattttgtaa ataaacttta ctatcttttt gatccacatc
     4561 aaaataaagc tcaaaatctt catcatatct tggagataaa atattataag ttcctgctct
     4621 taaatgtcca aaatctttca aaaattgatc tttgttgtga aaattaagat ggtttgtttg
     4681 tttgcttaaa tttttactca ctgtattgag tgaatttaaa aaatcatctt tttcctcttt
     4741 agttataaaa tcaatctcaa ctaaagaatt taaaagttgc attgctacaa atgcagccct
     4801 agccaccccc gcaaaaggca atgttccata acgcttgcat tcttcaataa gccaataaat
     4861 tttatcaatt aaagaaaaat tagaattaat aatgccatca tatctttctt ttagcttata
     4921 agctttttgt atgtctttta aataaagccc tgatctagga ttaataatct tatttgtaag
     4981 ttctaataat gaaaattcta atcttttgat
//
LOCUS       DARBAR010000116         4949 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.116, whole genome shotgun sequence.
ACCESSION   DARBAR010000116 DARBAR010000000
VERSION     DARBAR010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4949
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.116"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(55..1203)
                     /gene="nspC"
                     /locus_tag="SB815_001532"
     CDS             complement(55..1203)
                     /gene="nspC"
                     /locus_tag="SB815_001532"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HEG0907247.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTI
                     EGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN"
     gene            1327..2868
                     /gene="cueO"
                     /locus_tag="SB815_001533"
     CDS             1327..2868
                     /gene="cueO"
                     /locus_tag="SB815_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HEG0907248.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEESNTLFLANINLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGK
                     SENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRAFRDTINVRPNEELRLKMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            2870..3091
                     /locus_tag="SB815_001534"
     CDS             2870..3091
                     /locus_tag="SB815_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEG0907249.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFNENTKLKDGDKIALLPPVCGG"
     gene            3092..3538
                     /locus_tag="SB815_001535"
     CDS             3092..3538
                     /locus_tag="SB815_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEG0907250.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGG
                     IEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            3542..4732
                     /locus_tag="SB815_001536"
     CDS             3542..4732
                     /locus_tag="SB815_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG0907251.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDI
                     IFMP"
BASE COUNT         1783 a          795 c          798 g         1573 t
ORIGIN      
        1 atctttgatt ctcttccgag taaaattaac attttatgca aattataaat aatactaatt
       61 tcttaaagaa taatccttat aagaaaattc tcttatcatt tgaagttcat tttttgcatt
      121 taaaagcatg agatttggaa gtcttatacc attaaaagtt gtgtttttca caatggtgta
      181 atgaatttga tctaaaaaaa caattttatc gccgatttta agctttttat caaaggcgta
      241 ttctcccatt acatcacccg ctaaacaagt atttccagta agcaaatagg aaaattcgct
      301 ttcttttaag tctgaaattt tttcattttc tcttgtggct aaaattctag catttaaaac
      361 ttcacttgta taaggcatga tgatagtatc tggcatatgc gcttcgcttg aagtatctaa
      421 aatagcaatt tgtttttcat tttctatgat atctactaca ctagccacca aatttcctgt
      481 ttgccaaccc accgcttcgc ctggttcaag ataaacttgc acaccgtatt tatcactgaa
      541 atttttacac aaagcaataa gcttttcaac atcatagcct tttttagtga tgtgatgtcc
      601 tcctccaaaa ttcacccatt tcatttgccc tatccatttg ccaaatttct cttcaaaaac
      661 ctttaaaaca gcttctaaag caccagcact ttcttcgcaa agtgcgtgaa aatgaagtcc
      721 ttctatggta cttaaatcca cattttcaaa atctttagca cgaattccaa gtcttgagta
      781 tcttccacaa ggattgtaaa gttcttttgg ggctagagaa aattcaacat tacaacgaag
      841 acctaaggaa tttttttgtg ttttagcttg aaatttatga aattgagcta aagagttaaa
      901 cactatatga tgagataagc tggctatttc acctatttca tcttctttaa aagcaggcga
      961 ataagtatga atttctttat ccatgtattc tttagcaaat tttgcttccc aaagtccgct
     1021 acaagtacaa ccttttaagt attctccaac aattttcatc gctcctgaaa aagcaaaacc
     1081 ttttaaagct aaaagcactt tagcaccact tttttcgcca acacttgcta aaagctcaca
     1141 attttttctt aatttatctt cttctaaaat ataagctggg gtttgaattt tttcataaaa
     1201 cattattttt ccttgattaa attgctaaaa tcataacaaa attaaaccaa attttcaaaa
     1261 taaatattta ctaaagttaa aaaaataatg actataatac aaaaaatcaa gcaaaaggaa
     1321 aaactaatga atagaagaaa ttttttaaaa tttaatgcac tcactctagc aagtatgggt
     1381 gtagcctatg caaatcctat gcatgatatg cactccatgc ataaaaatca ttctataaat
     1441 catgacttag atacttcttt tataaacttt gctccaaaaa atttaaagct tttagatcca
     1501 aaacaattcc cccaaggaga aattttaaaa gccttgcctt tactcaaaaa tgaaagtaaa
     1561 gaaaaaaata tttttcgtgc taccctagaa atcaaagaaa atcatataga gcttatcaaa
     1621 ggtaaaaaaa ccttatttta tacttacaat ggcctcgtgc ctgctccaaa aatagaagtt
     1681 tttgaaggag ataaacttga aattttagtc aaaaacaaac tcaaagaagc tacaactata
     1741 cattggcatg gcgttcctgt gccacctgat caagatggaa gcccacatga tcctatctta
     1801 gcaggagaag aaagaatata tcgttttgaa attcctcaag atagcgcagg aacttactgg
     1861 tatcatccac atcctcatta tacggcttct aaacaagttt ttatgggttt agcaggggct
     1921 tttgtgatca aagcaaaaaa agatgcttta agtcatttaa aagaaaaaga tttgatgatt
     1981 agcgatttgc gtcttgatga aaacgctcaa attccaaaca acaacctaaa tgattggcta
     2041 aatggtagag aaggagaatt tgtactcatc aatggacaat ttaaacctaa aatcaaactc
     2101 gccacaaacg aacgcatacg catttataat gctactgcag caagatattt aaatttacgc
     2161 atacaaggag ctaagtttat acttgttggt actgatggtg gacttataga aaaagctatt
     2221 tataaagaag aacttttctt aagtcctgct tctcgtgtag aagttttaat cgacgctcca
     2281 aaagatggga attttaagct agaaagtgct tattatgata gggataaaat gatggtaaaa
     2341 gaagaatcta ataccctatt tctagccaat attaacctaa aaaaagaaaa attagaactt
     2401 ccaaaaaatt taaaaatttt caaaccttta gaagaaccta aggaatttaa agaaataatc
     2461 atgagtgaag atcatatgca aatgcatgga atgatgggaa aaagtgaaaa tgaattaaaa
     2521 atcgctcttg cgtctatgtt tttaatcaat ggcaaaagct atgatttaaa acgcattgat
     2581 ttaagctcca agcttggagt agttgaagac tggatagtga taaacaaatc tcacatggat
     2641 catcctttcc acatacacgg cacgcaattt gaactcatct catcaaaact caatggcaaa
     2701 gttcaaaaag ccgaatttag agccttcaga gatactataa atgtgcgtcc taatgaagag
     2761 ttaagactta aaatgaaaca agattttaaa ggacttagaa tgtatcattg ccatatttta
     2821 gaacatgaag atttaggaat gatgggaaat ttagaagtaa aggaataaaa tggtaaaagt
     2881 ggaattttta ggccctataa ataaagaaaa tttagaactt gaagtaaaaa atttaaaaga
     2941 attaaaagaa attttgcaaa aagatgagag tttaaaagaa tggctagaac tttgtgctgt
     3001 atctttaaat gatgaaatca tttttaatga aaacaccaag ttaaaagatg gtgataaaat
     3061 agcactttta ccgccagttt gtggaggcta aatgaaacat tttacacttt atcaaggctc
     3121 tttagatatt cctaaaattt atagccaatg gtatgaattt tccaaggata aaaactgcgg
     3181 tgctttactg actttttgtg gtattgtgcg tgaagaagga ggtattgagg cacttagttt
     3241 tgatatttat gaatcgcttt taaaaaaatg gtttgatgag tggcaaaaaa gagtagattt
     3301 tgatggtatt agcttgcttt ttgctcactc tataggcgat gtagcgatac atgaaagctc
     3361 gtattttgca ggaattttaa gcaaacaaag aaaattagga cttaaacttc ttaatgaatt
     3421 tgttgaagat tttaaagcaa gtgcgcccat ttggaagtat gatgtgataa acaaagaaag
     3481 aatttatgcc aaagaaagat caaccaagct ttgcggtgca ggacttttaa aaggataaaa
     3541 aatgctaatg tcttatgaag aaagtttaaa aattttacat tctcatatca aaacttatga
     3601 aaagattgaa aaaatagctc ttacagagtg tttaggacgc attttagctc aagatataaa
     3661 agcccctaaa aatcagcctg aatttccaac ctcggctatg gatggttatg cgatcaaatt
     3721 tgaagatcaa gacaagcctt taaaaatttt aggcctcaca cctgcgggta ctatgccaca
     3781 atttagcgta caaaatggca cttgtgtaaa aacctttaca ggctcactca tgagcgaagg
     3841 aagcgatact ttagtccctg ttgaaaatat acgcatagaa aataatactc tttttataga
     3901 aaaaaaagtt ccccaagctt ttgccgtgcg tgcggtagga gaaaactata aaaaagatga
     3961 aattttactc aaaaaaggca caaggttaaa ttatagcgag atagctcttt tagctgaact
     4021 tggatttttt cacattagtg tgtttataaa acctattgta ggggttttaa gtagtggaag
     4081 tgagatcaaa gatctaggag aagccttgga aaatcctgct caaatccgct cttcaaatca
     4141 tatcgccata gctaatttag ctaaaaattt aaattgcgat acaagggttt ttcctctttt
     4201 aaaagatgat gagaaagcca ctttttccac ccttgaaagt gctttgcaaa gttgtgatat
     4261 tttggttaca acgggcgggg tttctatggg agattttgac tttttaaaaa aagccatcaa
     4321 agaatacgaa atcatcatcg ataaagccga cataaaacca ggtagacata tcaaaatagc
     4381 taaggctaat gaaaaattca tcatcgcctt accaggtttt ccttactcgg ctatggtaat
     4441 gtttaatctt tacacaagag agattttaaa ctcttggtta cttcaaccta aagactatat
     4501 ttgcaaagcc tttttacaag gaagttacaa gaaaaaaaca ccttatttgg aatttgtcgc
     4561 ttgcaatata gagtttaaaa atggacgcat tttagccaat cttgaaggca aaaaagaagg
     4621 ctctagtgcg attataaaca atcttaacaa taaagctgcc cttatggtgg tgccaaaaga
     4681 atgtgaaatg ttagaaaatg aaagtttagt agatattatc tttatgcctt aaaattattt
     4741 aaataatttt atttcgattt taatcaaccc taaatttcaa taagtttcaa attcgcaacc
     4801 tccttttagt ggagtaatta gccctagtgg agtttcaatc cactagggtt tattttagtc
     4861 cctttttaaa tttctttatg gtaaaattat ggcagttttt aaaagagctt ggcggttgtt
     4921 ttagtccctt tttaaatttc tttatggta
//
LOCUS       DARBAR010000117         4884 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.117, whole genome shotgun sequence.
ACCESSION   DARBAR010000117 DARBAR010000000
VERSION     DARBAR010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4884)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4884)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4884
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.117"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..1015
                     /locus_tag="SB815_001537"
     CDS             <1..1015
                     /locus_tag="SB815_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MlaE family lipid ABC transporter permease
                     subunit"
                     /protein_id="HEG0907252.1"
                     /translation="ALIQSKEVIFDFKDLKAIDTAGVRFFLALENDLKNKNIKITKEG
                     LNSRFQTLFELCEKNYQRLGKTKKSHQNFSEYFIDLGKLSLELLKILRKFINFTGAFF
                     TSLFLCLKNPKNFRFIAFLYHIENSAFKALPIVILTALLVGVVLAYQAAYQLAQFGAN
                     IFIVDLMGISATRELAPLIAAIVIAGRSASSYTAQIGVMKITDEIAAMNTMGFRSFEF
                     IVIPRVMALVVAMPLIVAISDAISIIGGMMVAKLNLDISFAEFLRRFREAVDIKHIFI
                     GLAKAPIFGFLIGLIACFRGFEVKNTTQSIGIYTTKSVVNAIFWVIAFDALFSVILTS
                     TGI"
     gene            1016..1738
                     /locus_tag="SB815_001538"
     CDS             1016..1738
                     /locus_tag="SB815_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0907253.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDDGEYEILGYKLKNINEEDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            1741..2631
                     /locus_tag="SB815_001539"
     CDS             1741..2631
                     /locus_tag="SB815_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEG0907254.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFIQLQGGSKNSKDLVSMQGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKNIKESTMILKNFIKKADEKLNTYDDIKASLMQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            2631..3230
                     /locus_tag="SB815_001540"
     CDS             2631..3230
                     /locus_tag="SB815_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0907255.1"
                     /translation="MLKQLFCILTFIFMLCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYSLESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIRSTYNAFQKALNKIGNEIVFWVNSNLS"
     gene            3286..3786
                     /locus_tag="SB815_001541"
     CDS             3286..3786
                     /locus_tag="SB815_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907256.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELSTAITMGETMDNAGIYNSTMD
                     FKNLFK"
     gene            complement(4155..>4884)
                     /gene="map"
                     /locus_tag="SB815_001542"
     CDS             complement(4155..>4884)
                     /gene="map"
                     /locus_tag="SB815_001542"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEG0907257.1"
                     /translation="EKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMAEDYILSLGAK
                     PSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGYYGDAARTIAI
                     GEVSPADKALISCAKDALYHAIDIIRDGMRFKELSAALGEFIHVRGFVPLRGYCGHGI
                     GRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHYNGKWDAGSID
                     GLNAAHYEHCVAVINGRAEILSMI"
BASE COUNT         1770 a          735 c          745 g         1634 t
ORIGIN      
        1 agctttgatc caaagcaagg aagtgatttt tgattttaaa gatctaaaag caatcgatac
       61 cgctggagtg agatttttcc ttgctttgga aaatgacctt aaaaataaaa atattaaaat
      121 caccaaagaa ggcttaaatt cacgctttca aacccttttt gaactttgtg aaaaaaacta
      181 ccaaagacta ggcaaaacaa aaaaatcaca tcaaaatttc agtgaatact ttatcgatct
      241 tggaaaatta agtttagaac ttttaaaaat tttaagaaaa ttcatcaatt tcacaggagc
      301 ttttttcaca agtctttttt tatgcctcaa aaatcctaaa aattttcgct ttattgcttt
      361 tttatatcat atagaaaatt ctgcttttaa agccttacct atagttattt taaccgctct
      421 tttagtagga gtggttttag cctatcaggc tgcttaccaa ctcgcacaat ttggagccaa
      481 tattttcata gtggatttga tgggaatttc agccactaga gaacttgcac ctttaatcgc
      541 tgccatagtg atcgcaggaa gaagtgcaag ctcttatacc gcacaaattg gggtgatgaa
      601 aattactgat gaaattgcag ctatgaatac tatgggtttt cgttcttttg aatttattgt
      661 tattccacgt gtcatggctt tggtagtagc tatgccttta atcgttgcca ttagcgatgc
      721 aatcagtatt ataggtggaa tgatggttgc aaaattaaat cttgatattt cttttgccga
      781 atttttaaga cgctttagag aagctgtaga tataaaacat atctttatag gacttgcaaa
      841 agcacctatt tttggatttt tgataggact tattgcttgt tttcgtggtt ttgaggtaaa
      901 aaacactaca caaagtatag gaatttatac aacaaaaagc gttgtaaatg ctattttttg
      961 ggtgatagct tttgatgctt tattctctgt tattttaact tctacaggaa tttaaatggt
     1021 tattaaagca caaaatatca ttacaaaatt tggagaaaaa attgtccatg atggcgtaag
     1081 ttttgaaatc aaaaaaaacg aaatttttgg tattttagga ggtagtggaa gtggaaaatc
     1141 cgtcctttta aaacaaatgc ttatgcttga acattttgat gatggagaat atgaaatttt
     1201 aggctataaa cttaaaaata tcaacgaaga agatgcactt gctttgcgta aaaaatgggg
     1261 tgtggttttt cagtttgctg cactttttag cttttttaat gtttatgaaa atatcgctat
     1321 tcctttaaaa gaatacactc atttagatga aaatagcata caagaactgg ttttaatgaa
     1381 gctaaaaatg gtaggcttaa acgaaagtgt tttaaaacaa tttccaagcg aacttagtgg
     1441 cggtatgcaa aaaagagtgg caattgctag agctttagca cttgatagta aattgctttt
     1501 tttagatgaa cctacttcag gacttgaccc tcatagtagt cgtgaatttg acgatttggt
     1561 tttagagtta aaaaaaagtt ttgatctaaa tatcattttg gttacacatg ataaagaaag
     1621 tatgaaaaat ttactcgatc gttttatcat tttagaaaat aaaaaagttg gattttgcgg
     1681 cacttatgaa gaattacgct tgcaaaatga acgacttttt aaaagattta tggagtaaaa
     1741 gtggaaaata gagcaaatta tttttttgta ggactttttg tttttggagt attttttgca
     1801 agccttggtt tcatactttg gcttggtgga tactctaaag aagaaagttt taagtattat
     1861 gaaattcaca cacaagaatc cgttgcagga cttggcataa aagcacccgt aaggcttttg
     1921 ggcgtggaag taggtagcgt agaagaaatc agcatttaca atcaagatga actcggcgtt
     1981 aacatacgca tcaaggtcaa aaacaatacc cctataaaag aagatacttt tgctactttg
     2041 caacttcaag gtatcacagg acttaaattt atccaacttc aaggcggaag taaaaatagt
     2101 aaagatctag tatctatgca gggaaaactt ccagtcattc cttttaaaga aagtttttta
     2161 gcgaccatag acagacaaag tgaacatatt ttttctttgg ttaaaacggc cgatgataaa
     2221 tcaaaagaac ttttaagcga aaaaaatctt aaaaatctag aaatcctttt gcaaaatcta
     2281 gcagaattaa gtgcaaattt aaacgctaat tctaaaaatt taagtcttaa tctttcaaac
     2341 gcaagtttaa aaataggaaa aatggctgat aatataagcc ttagtgcgca aaatttcaac
     2401 tccagtctta aaaacataaa agaaagcaca atgattttaa aaaatttcat aaaaaaagct
     2461 gatgaaaaat taaacactta tgatgatatt aaagcatctt tgatgcaaaa tttagaactt
     2521 tttaaacggg ttttaattga aagcaatatt ctaatagaaa atttacaaaa cagccctgct
     2581 gatttgattt ttaaagaaac taaacctaaa cttggaccag gagaaaaata atgctaaagc
     2641 aattattctg tattttgact tttattttta tgttatgcgg atgctcttta agacacgaaa
     2701 ccatcaataa aaatgaaaat atcatattaa aagacgaagg aatagactca aatatttttt
     2761 ttaaaaaaac tggtaaaatt cttaaaattc gcaatgcaaa tgcacctttg tatttaaact
     2821 caagagctat tgtttatata gataatggtt ttagcaacaa atacgcacat tatttctggg
     2881 gagatttacc aagcaatctt tattcttttt taattttatc aaaatttgaa caaagcaata
     2941 tttttacaac cttactttct tcaacaagct ctttaagtgc ggattattct cttgaaagca
     3001 ggattaactc ttttgagcaa attcttaata acaatgaaaa ctacgctcaa atttctataa
     3061 gcgtaaattt cataaatctt gaaaacaatc aaataatagc tcataaaatt ttcaatacca
     3121 aagaaaaaat agaaaaaaaa gatatccgct ctacctataa tgcttttcaa aaagccttga
     3181 ataaaattgg caatgagatt gttttttggg taaattctaa cttatcctaa tttaggaaca
     3241 ctttttgctt tttaaatatt tagcaatatt tttgaaaggt aaacaatgaa aagtgattta
     3301 gatatattta aaaaacactt aggtgaaatt cagggcgtga atgaatttaa agcaaatcaa
     3361 atttgctctc aaatcaatga tgcaaatgat tttataggag cacttcaagt gcttgatatg
     3421 tctttaaaaa aaatagaaaa aagcattcta gaaagaatag atgaaaattc agatgatatg
     3481 caaaaaagaa ctcttgatgc cacagcgtca caacttatac aaaactgctc tttcatggga
     3541 acagctcttt ttggaaatat tttcaatgtt tatgttggta aaaaactttt tgaatttgaa
     3601 attgctaatc cacttttaat tcttcaaaca agtaattacg aaggtgtatt ggcctatata
     3661 caagataaaa gagatgaaat aaaaatcatt ctatcagaat tatcaaccgc aattaccatg
     3721 ggcgaaacta tggataatgc tggaatttat aactctacaa tggattttaa aaatttattt
     3781 aaataagaat agtaatcgtt tgttctcttt aagcaaatat aatatatttt agcttaaaga
     3841 gattttccaa actctaaaag agagttaggc tacgaataaa aagggggagg gaaatagcct
     3901 aacccaaacg agatcttaaa agatctcttt aaactaaaat aaatatttag ataatttaac
     3961 aatttttatt aaattatcta aaccatattt atgttttagt ttaatacgat gtgacatttt
     4021 attctaaaaa cacttaatct gctataaaat atcatttagt aacttaactt attaaagaat
     4081 attactacaa tattattaaa aaattttaaa tttttaggat tttaagaaaa aaatattatt
     4141 tttataattt aatatcatat catagaaaga atttcagcac gcccattaat cacggcaaca
     4201 caatgttcat aatgagccgc attcagccca tcaatacttc cagcatccca ttttccatta
     4261 taatgctttg gtgttccatc tttttggcat atcataggct ctatgcaaaa caccattcca
     4321 tttttaattt tagggccact ttttgcactc gcaccttttt ctaaatagtt taaaatttca
     4381 ggctctccat ggggctttcg tcctatacca tgcccgcaat atccacgaag cgggacaaaa
     4441 cctcttacat ggataaattc gcctaaagca gctgaaagtt ccttaaaacg cattccatca
     4501 cgaataatat ctatagcatg atataacgcg tctttagcac aagagattaa agctttatca
     4561 gcgggtgaaa cttctcctat agcaatagtt cttgctgcat ccccataata cccatcaatc
     4621 aaacttccca catcaagacc taaaatatca ccctctttga taattttatc atctggaatt
     4681 ccatggatac aaacttgatt taaagatgtg caaatggcac ctggaaaacc ataaagtccc
     4741 ttaaatgatg gcttggcgcc aaggcttaaa atataatctt ctgccatttt atcgatttgt
     4801 tttaagctca ttcctatttt aatttcattc tctaaaaaat ttaaagtttt tgctacaatt
     4861 tgatttgcta ttcttaattt ttct
//
LOCUS       DARBAR010000118         4873 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.118, whole genome shotgun sequence.
ACCESSION   DARBAR010000118 DARBAR010000000
VERSION     DARBAR010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4873)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4873)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4873
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.118"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            65..445
                     /locus_tag="SB815_001543"
     CDS             65..445
                     /locus_tag="SB815_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907258.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVLMIVDKLEN
                     FKKFYKLKIDGIILKDNIDNFPKN"
     gene            490..4002
                     /locus_tag="SB815_001544"
     CDS             490..4002
                     /locus_tag="SB815_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HEG0907259.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGFIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFVKFEIN
                     VIYLFYFIALVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGTLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINLQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KTFLEKLANKGINLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIPSFILKSIF
                     TPSKNNLAIAAILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTTFEMKFKKSIFEGYGATETTPVASVNLPNHFDV
                     DYWLIHRANKEGSVGMPLPGTAVRIVDPNNYENLKTNEDGLILIGGHQVMVGYLNDKE
                     KTDEVVKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKF
                     IDTEVVKFCATSLEDEKKGEQIVLLIECNNEIFEGVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAI"
     gene            complement(4010..>4873)
                     /locus_tag="SB815_001545"
     CDS             complement(4010..>4873)
                     /locus_tag="SB815_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEG0907260.1"
                     /translation="GYFAKRIGVLKQKQARTFLDFAIIFALPCLIFDKAYHLNFDFSL
                     IIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFGNTIFVGMPIVAGIFND
                     PQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVKKILSFPPFLALLFGFL
                     CKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSYKPTIVVIFAKMILAPL
                     FFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLDSNLAVSAVAFGVLFAF
                     VSMPILIWTLL"
BASE COUNT         1759 a          626 c          794 g         1694 t
ORIGIN      
        1 ttgcttggta acaattttat aagtataatt tacaaaataa taaaaaatag agctaaggaa
       61 aaaaatgctt attattggac ataaattatt aaaaaattta gatttttctt ttattgaaag
      121 tgttgaagaa gttaaagata ataaagttta ttgtattgtt tatgatgaaa aattgatttc
      181 ttatttaagt caaaatgatt ttgaatttgc tattttagtt caaaataaag atgagatatt
      241 tttagccaat gctttaggag ctaagttttt gctttgtaat gataaaaaac ttgcaaaatt
      301 tgctagtaag gttgcagaat tttatgtttt tgatagtagg gttttaatga ttgttgataa
      361 attagagaat tttaaaaaat tttataaatt aaaaatcgat ggaattattt taaaagataa
      421 tatagataat tttcctaaaa actgataaat tcttttgtaa aataagcgct aattgacgag
      481 gtttaaataa tgcaaaaaaa atcttttttg aaaatttacg gattaattcc ttttttactt
      541 atagcattca tcaatgcttt tgtggatttg ggacataaaa ttattattca aaatactatt
      601 tataaggcct atgaaggaag tgagcagtta tttttaaatg ctatagttaa tgctttgatt
      661 ttacttcctt ttattcttat gctttctcct tcgggttttt tagcggataa atatccaaaa
      721 aatattgtaa tgaaaatttc agcaattttc aatgttatac tcactttaat aatttgcatt
      781 tgttactata gcggtgcttt ttggatggct tttattttta cttttataat gggagcacaa
      841 gcagcgattt attcaccaag taaatacggt tttattaaag aactcgtggg aaaagacttt
      901 cttgctatgg gtaatggtgt aattaatgcg gtaagcattg tggcaatctt agcgggaatg
      961 gctttatttt ctttaagctt tgaaagtctt tatagttcta tgtataatca aacagatgaa
     1021 attttaaaag aagtagcgcc tttaggaatt gtgctaattt tattttcttg tatcgaagta
     1081 ttttttgcgt ggcgtttacc taagctcaaa caaacaaata aagatttagt ttttaataaa
     1141 aaagactata ttcgtggaaa acttctaata aataatctta agcttgtttt taaaaataaa
     1201 actatttggc tttgtataat tggaatttca tttttttggg ctatatctca actttatctt
     1261 gtcagctttc ctgtctttgc taaaaatgaa cttttcatag aaaatacttt ttatgtgcaa
     1321 atttcactcg ctttttctgg tataggagtg attttaggct ctttagtagc tggtaaattt
     1381 tcaaaaaatt atatagaact tggatttatt ccacttggtg cattgggtat gtttttaatg
     1441 gcttttttaa tgccttattt tataagttta ttaagttata gttttttatt tttctttttt
     1501 ggattttgcg gagccctttt tatcattcct ttaaatactt taatccaatt tcatgctaaa
     1561 gaaaatgaat taggacaaat tcttgcagga aataattttt ttcaaaatat tgccatgttg
     1621 ggatttttgc tcttggcaac tttatttgta aaatttgaaa tcaatgtgat ttatttgttt
     1681 tattttattg ctttggtaac ctttatagga agtttttaca tacttttaaa actccccttt
     1741 tctttagtgc gtatactttt aagcatagct tttttacaac gataccgttt acttgtggaa
     1801 ggttttgaaa atataccaga aaaaggtgga gctttacttt tgggtaatca tatttctttt
     1861 attgattggg ctgttgtaca aatggcaatt ccaagaaaaa tttattttgt tatggaaaga
     1921 agtatttatt ctaaatggta tattaaaatt tttcttgata aatttggtat tattcctgta
     1981 tcaagtacag gaagtaagac gagtttagaa ctgatagcaa agcatattaa agaaggtaat
     2041 ttagtttgct tatttcctga aggtacactt tcgcgacatg ggcaattaaa tgaatttaaa
     2101 gcaggatttg aattagcttg tgaatgttta agtgaagatg atggaaaaat tattcctttt
     2161 tatataagag ggctttgggg tagcgctttt tcaagaagtg atgaagaatt ttcagcaaga
     2221 aaccgcactt taaataaaag aaaaattgct atagcttttg gtaaagctat gcctttgcat
     2281 tctaaaaaag atgaagttaa agctaaagtt tttgaacttt cttttatggc ttggaaatca
     2341 caatgcgaag ctatgcatac tatagcaaga gcttggatag atacagctaa aaaaaatcta
     2401 aatcaaatag ctattatcga tacactagct ggagatattt cttatagaaa aatgttgact
     2461 cttagtttat ttcttaattt ttttattaaa agaaaatcca aagagttaaa cattaacctt
     2521 cagcgtggaa gttacgctcc taaagaggaa gctataggaa ttttactacc tgcttctttt
     2581 gcaagttctt taaccaatct atctgtttta atcgcagaaa aaattgcagt aaatcttaat
     2641 ttcactgctg gagaaaaagc tctaaaagca gctataaaaa atgcgcaaat ttcacaaatt
     2701 tatacttcta aaactttttt agaaaaatta gcaaataaag gtataaacct aaatttcgat
     2761 acaaatatac atttaattta ttttgaagat attgtagaag attttaaaat gcaaaaaact
     2821 aaaattttta gcatgatgct agcagttagt attataccta gttttatact caaaagcatc
     2881 ttcactcctt caaaaaacaa tcttgccatc gcagctattt tatttagtag tggaagtgaa
     2941 ggttctccaa aaggtgttat gctcaataac cgtaatattt taagcaatat agcacaaatt
     3001 tctgatgtgc tttgcacaag aaataatgat gtcattctct catctttacc accttttcat
     3061 gcttttggac ttaccgtaac tacatttttg cctttgcttg aaggtattaa aagcatcact
     3121 ttttcagatc caaccgatgc cttaggggtt gccaaagctg ttgctaaaaa taatgtcact
     3181 attatgtgtg gaacttcaac ctttttagga atttatgcaa gaaataaaaa gcttgatgct
     3241 ttaatgtttg aaagtttaag aatagttgta tcgggcgctg aaaaactaaa aaatgaagta
     3301 agaactactt ttgaaatgaa gtttaaaaaa agcatttttg aaggttacgg ggctacggaa
     3361 accacgcctg tggcgagtgt aaatttacca aatcattttg atgtggatta ttggcttata
     3421 catcgtgcta ataaagaagg aagcgtagga atgcctctac ctggaactgc ggtacgtatt
     3481 gttgatccaa ataattatga aaatttaaaa acaaatgaag atggactcat acttataggc
     3541 ggtcatcaag ttatggtagg ctatcttaat gacaaagaaa aaaccgatga agtggttaaa
     3601 gaaattgatg gcataagatg gtacaacacg ggagataagg gacatttgga tgaagatggt
     3661 tttttatata ttgtcgatcg ttattctcgc tttgcaaaaa ttggcggaga gatgatttct
     3721 ttgggtgcaa tagaagaaga aattgccaaa tttatagaca ctgaagtggt taaattttgt
     3781 gccacatctt tagaagatga gaaaaaaggg gaacaaattg ttttactcat agaatgcaat
     3841 aatgaaattt ttgaaggagt atgtgaggct ataaaaaatt ctaatatacc tacacttttt
     3901 aaacctagat attattttca aatagaaaaa attcccctcc taggttcagg aaaagttgat
     3961 cttaaaaaag ttaaagaatt agctaaaaat ttagccatat aatttgagct tataacaaag
     4021 tccaaattaa aattggcata gaaacaaaag caaaaagaac tccaaaggct acagcactta
     4081 cggctaaatt actatctagt ttagctttca ttaccatagc tcctgctaaa gtcatagtag
     4141 gagctgcact ttctataata gcaacgatgg tagaatcttt taattccaaa ttaaatattt
     4201 ttaaacaaaa tacaaaaaat aaaggagcta aaatcatttt agcaaagatg acaactattg
     4261 taggtttgta agaggtttta atcgccataa agccaagtcc taaacctata gcaaaaagtg
     4321 caacaggggt tgcagaggca ccaaataaac gaataggaga gaaaataaat tcaggtaaag
     4381 taatcaattt acacaaaaaa ccaaaaagca aagctaaaaa aggtggaaaa ctaagaattt
     4441 ttttaacatt agcaagcaaa ctgacttttt ctccatttcc caaagaaagt ataaaaggtc
     4501 caaaaagtga tataggtaaa gttgtggcta aagcatcgta aaatataact tcagcgctaa
     4561 attgtgggtc attaaatata ccagcaacaa taggcatacc cacaaatata gtatttccaa
     4621 aacaagaaag caaaaacata ctgactaaag ttactttaga aaaatgaaaa acttttccaa
     4681 taagaatagc aaaaaaagct gctagtatac agctaaacaa tccaataaaa ataaaaataa
     4741 tcaatgaaaa atcaaaattt aaatgatatg ctttatcgaa aatcaaacaa ggtaaagcaa
     4801 aaataatagc aaaatctaaa aaagtcctag cttgtttttg ctttaaaacg ccaattcttt
     4861 tggcaaaata tcc
//
LOCUS       DARBAR010000119         4825 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.119, whole genome shotgun sequence.
ACCESSION   DARBAR010000119 DARBAR010000000
VERSION     DARBAR010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4825)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4825)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4825
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.119"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..301)
                     /locus_tag="SB815_001546"
     CDS             complement(<1..301)
                     /locus_tag="SB815_001546"
                     /inference="COORDINATES: protein motif:HMM:NF015581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HEG0907261.1"
                     /translation="MKKILVLLFMCFSSLFANDDFIYEKSKYNFNELIKRVEQELKDR
                     NLTIFAKFNHYQNALDVNLTLKSNTVIVFGNPIVGTYLMQENPMIGIELPLKILIW"
     gene            530..907
                     /locus_tag="SB815_001547"
     CDS             530..907
                     /locus_tag="SB815_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEG0907262.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLIKNGAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            916..1467
                     /locus_tag="SB815_001548"
     CDS             916..1467
                     /locus_tag="SB815_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEG0907263.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNTPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPTPQRNQNP
                     QHEEKLKEIDIDAYDSDDTNLPF"
     gene            1478..1738
                     /gene="rpsR"
                     /locus_tag="SB815_001549"
     CDS             1478..1738
                     /gene="rpsR"
                     /locus_tag="SB815_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEG0907264.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(1799..4174)
                     /gene="lon"
                     /locus_tag="SB815_001550"
     CDS             complement(1799..4174)
                     /gene="lon"
                     /locus_tag="SB815_001550"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEG0907265.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDIPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLVPDELKKHGLKSNELSIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLI"
     gene            complement(4191..4817)
                     /locus_tag="SB815_001551"
     CDS             complement(4191..4817)
                     /locus_tag="SB815_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEG0907266.1"
                     /translation="MVFLSVFFSACSTKNDEGLYNLSASEWYKQIIKDLQDKDLEKAD
                     DHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSRNADYIRY
                     LKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFNLAVFYLN
                     STIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
BASE COUNT         1673 a          814 c          623 g         1715 t
ORIGIN      
        1 gccagattaa aatttttaaa ggtaattcaa tacctatcat tggattttct tgcatcaaat
       61 aagttcctac aataggatta ccaaacacta taactgtatt tgattttaag gtcaaattaa
      121 catctaatgc attttgatag tgattaaatt ttgcaaaaat cgttaaattt ctatctttaa
      181 gctcttgctc aactcttttt atcagctcat taaaattata tttacttttt tcataaataa
      241 aatcatcatt tgcaaataaa ctgctaaaac acataaacaa caaaaccaat atttttttca
      301 attttaatcc ttgctcaatt aaggtcgtat tttaaaaaac attgcattat aacagtcgaa
      361 agtaaatcaa aacaaatcca ttgcttatta attgtttgat aatggcaatg ataatttaca
      421 tattaacttc attgaagtat aaattaagta tattatagta taatttgctc ttgctttaat
      481 gcaaaatcct tgctcataaa aatgggcttt atatccataa ggagaaaaga tgaaacatta
      541 tgaggtttta tttatcttaa aaccaacgct taccgaagag gaagtgaatg caaagttgga
      601 attcgttaaa gaagtcctaa tcaaaaatgg tgcagaaatt gaaactgttg ttccaatggg
      661 cactagaaaa ttagcgtata aaatcaaaaa atatgaaaga ggaacttatt ttgtgattta
      721 tttcaaagct cctacaaact tgatcgctga gcttgaaagg gtgttaagaa tcactgaaga
      781 agtaataaga tttttaatcg taaaatatga aaacaaaaaa gaaattgcag cttgggaaaa
      841 actaagccac gggattaagc aatctaaaaa agaaatcaaa cctttagatg ctcctgaaat
      901 tcaataagga aaaagatgtt taacaaagtt gttttggttg gaaatcttac acgcgatata
      961 gaaatgcgtt atgcacaaag cggtagtgct attggagctt ctgctatcgc agtaacaaga
     1021 agatttacca caaatggaga aaaaagagag gaaacttgct ttattgatat aagtttttat
     1081 ggtcgcaccg cagaagttgc aaaccaatac cttacaaaag gttcaaaagt actcatagaa
     1141 ggacgtttga gatttgaaca atggagtgat caaaatggac aaaatcgctc taaacatagc
     1201 attcaagttg aaaatatgga aatgcttggc aattccaata ctccacaaca aggcggaaat
     1261 tttggcaata atagcttttc aaacaacaat tatagtggaa actatgaaaa tcaaagctat
     1321 gatccttata tgagtgaaaa tcaaaatttt aataaagcaa aaacaaaccc tactccacaa
     1381 agaaaccaaa acccacaaca cgaagaaaaa ttaaaagaaa ttgatatcga tgcttatgat
     1441 agcgatgata ctaatttacc attttaaagg ataaactatg gcagaaaaaa gaaaatactc
     1501 tcgcaaatat tgcaaataca ctgaagcaaa agttgaattt attgattata aagatacagc
     1561 aatgttaaaa catgctttat ctgaaagatt taaaatcatg ccacgccgtt taacaggtac
     1621 aagcaaaaaa taccaagaaa tggtagaagt tgcaatcaaa cgtgcaagac atgtagctct
     1681 tatcccttat atagtggata gaaaagaagt aatcaataat ccttttgaag gactataatc
     1741 ttttaaaagc aaacttgtaa aaagtttgct ttcttataca tttattctca aaataaaatt
     1801 aaatcaaagt atattctaag acatcactaa aagtatcaac agcaatgatt tccatattgt
     1861 ctctaacctc actaggaata tcttttaagt ccctttcgta attttttctt gggattaaag
     1921 ctgtttttat atctgcttta taagctgcaa ttaatttttc ttttaatccg cctattggta
     1981 aaacttttcc ttttaaatct atttcacctg tcattgcaac atctgcttta acctttttat
     2041 cactaaaaat agaagcaata gctgtgctta tcgtaatgcc cgcacttgga ccatcttttg
     2101 gagtagctcc atctggcaca tggatatgaa tattataact atcataaaca ttaactttag
     2161 gatcgataat tattttttta ggtattttta tttttccttc atcgattaaa acttttatca
     2221 tgctaaaagc aattctagct gattctttca ttacatcacc caaacttccc gtgagcgtta
     2281 attctccttt acctttaatt tttacagcct ctacttttaa aacatctcca cctacacttg
     2341 tccaagccaa accattaacc tgacctactt gattttctcc attatttttt tctatttcaa
     2401 aaactttttt atctaaaaat tcattcaaat tttttgtatt aataatgact tttttaatat
     2461 tttctaaaag tagtttttta gcactcttac gacacaactc tgccactttg cgacgcaaat
     2521 ttctaactcc tgattcacga gtataatcac taatgattaa ctctatagtt tcatcatcaa
     2581 tagataattc attggatttt aagccatgtt ttttaagctc atctggaact aaatattttt
     2641 tcattatatg aaatttttca cttggagtat aagagctaag ttctataaat tccattctat
     2701 ctcttaaagg tgcaggaata ttgctaatat catttgctgt tgctataaaa atgactttac
     2761 ttaaatcaat attaaaattt aaataataat ccctaaattt agaattttgc tctggatcta
     2821 aaatttctaa aagcaccgca cttggatcgc ctctaaaact gcgatttaat ttatcaattt
     2881 catccaatac aattacagga ttaatttgtt ttgcctctat gagtccttgg gtaatacgtc
     2941 caggcatagc gcctatataa gttctacgat gaccacgtag ctcattaaca tcttcaagtc
     3001 cgcctaaggc tatgcgaata agctctcttt ttaaagcttt tgaaacagaa tttgccagtg
     3061 aagttttacc cacgccagga ggtccataaa gacaaagtat aactttagca ccatcttttt
     3121 ctgctatttt tcttttttct aaaagttccc taactgcaaa atattcttct atgcgttctt
     3181 ttggtttatt taatgcataa tgatcatggt tgagctgttt tgaaacttct ttaatatcaa
     3241 gttttttctt agaaattttt tcaaaaggaa tatctaatgc tgtttctatg taagtttgaa
     3301 tcatcgatgc ttcggaatta tcttgatgaa tgcgttcgaa tttttcaatt tgttttttga
     3361 tttctttata agcgtcttcg tgcataaatt tcttctttag ctccagacgc ttttgatact
     3421 ctctaacctc atcttctttt tgtgtgtcag aaccaagctc tttttgaatt tgtcttaatt
     3481 gttcttttaa aaaatattct ttatttacct tatcaatacg agaatgtact ttatttttaa
     3541 tttctttttg aattttattg gcttctattt cttgggcaat taaatctatt aattttacta
     3601 atttttgctc aagatctgtt aaaacaaaaa actcataagc aacttgtttt ttaatacgca
     3661 cagtatttaa aatcaaatca caaatcctag acgcatcaaa accttcttca attgttctta
     3721 aaagatctgg agaaaaataa tgactaatat ttgccaaatt ttttaccttc tcttttaaaa
     3781 cttcaagaag cgcttctttt ttagttcctt ctaaaaagtc ttcttttata agttctatct
     3841 tggcttctaa aggtttatta gaaatttgct ctataatttt acccttagca tatccttgaa
     3901 aaagtatttt cacccttcca tcaggtaaag gaacttttcg catgatagtc ccaatcactc
     3961 cgcaattata aatttcatca aaatttcttc cattttccaa ctttgaaggt gcaacaaaaa
     4021 gcatgctatc atttttaatc gcaagatcta aagctttcat attggatgaa tcgttaataa
     4081 aaataggagt tatcataaaa ggatataaaa ataattcatc ttcaaccaat actggtaaat
     4141 ttgctggata attttgtatc tcttcaatct gcatttattt tccttgttta ttaaaatctt
     4201 tcaaatatac ttctatacca aggaagctca ggtttgataa tactttgctg ataaaattca
     4261 ctttcttgaa gtctttgttt ataaatttgt gcactttcat catgccctat gcgctggtat
     4321 agattttcta tagtactatt aagataaaaa accgctaaat taaattttgt aagcattgtt
     4381 tgaaccaaag gttcatattc tgtataagga taatctttca aaaaagtatc tatttctttt
     4441 tggctttcaa gcattaaagc ctgattacga tttggcactg caaatgcatc aaattttgcc
     4501 ttaattttaa gataacgaat ataatcagca ttgcgtgaat ttccaaattt tttattatat
     4561 tcatctaaat aaaattcagc taacttatat tcctcttcat ccatatgagc ttgtgctaaa
     4621 ataattaaag tagtttccaa taaaggatcg gcaacatgct cacttgccat accattataa
     4681 tgatcatcag ctttttccaa atccttgtcc tgcaaatctt taataatttg cttataccac
     4741 tcactagcgc taagattgta taaaccttca tcatttttcg tactacacgc actaaaaaaa
     4801 acacttaaaa aaaccaataa aaaaa
//
LOCUS       DARBAR010000120         4706 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.120, whole genome shotgun sequence.
ACCESSION   DARBAR010000120 DARBAR010000000
VERSION     DARBAR010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4706
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.120"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            20..763
                     /locus_tag="SB815_001552"
     CDS             20..763
                     /locus_tag="SB815_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HEG0907267.1"
                     /translation="MTIDLNHNFTSFVLLDEVDFNFSELKSILEDKFNIKIADENFTK
                     EGVIFSYENMLVTLNLINNPIPNHEVEYYANFNFMWKDALEQTKKHKAHLLIAVLSQD
                     QSKLEQAKMFTKIAVLCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYV
                     SVYPSENGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKD
                     ILKFEDGKEIKFIKSQGISVENESLKIIF"
     gene            827..1243
                     /locus_tag="SB815_001553"
     CDS             827..1243
                     /locus_tag="SB815_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG0907268.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQPNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
     gene            1503..2753
                     /locus_tag="SB815_001554"
     CDS             1503..2753
                     /locus_tag="SB815_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid transporter"
                     /protein_id="HEG0907269.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGRIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            2768..4132
                     /locus_tag="SB815_001555"
     CDS             2768..4132
                     /locus_tag="SB815_001555"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HEG0907270.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLS
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEICAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKVIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGANAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(4140..4661)
                     /locus_tag="SB815_001556"
     CDS             complement(4140..4661)
                     /locus_tag="SB815_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907271.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDDL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNETKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLLFLTICLLLLVMGVINLGLLFKQIRILKSFSKEEMK
                     EFLSQRMKKYTKV"
BASE COUNT         1575 a          585 c          816 g         1730 t
ORIGIN      
        1 aaatttaata gggtttaaca tgactataga tttaaatcac aattttacct cttttgttct
       61 tcttgatgaa gttgatttta atttttcgga gttaaaaagc attttagaag ataaatttaa
      121 tataaaaata gctgatgaaa attttaccaa agagggcgtg attttttcat atgaaaatat
      181 gttagttact ctaaatttga ttaacaatcc tatacctaat cacgaagtag aatactatgc
      241 aaattttaat tttatgtgga aagatgcctt agagcaaact aaaaaacata aagctcatct
      301 tcttatagcg gtgctaagtc aagatcaaag caaattagaa caagctaaaa tgtttacgaa
      361 aattgcagtt ttatgtttgg ataataaaca tgctttaggt ttttatacag gtgcagttgt
      421 tttagagccc agtttttata tagaaaatgc aaaaatgtta gatgataatc gcttgccggt
      481 atataattgg atatatgtta gtgtttatcc tagtgaaaat ggagttaatg cttatactta
      541 tgggcttaga aattttgata aattagaact tgaagtttgt gatttaaaca tagaagaaaa
      601 agaacttttc ttttgtattt atgatattgt tttgcatatt ttaacttatg atattaatct
      661 aaaagataaa gatattttaa aatttgaaga tggaaaagaa ataaaattta taaaaagtca
      721 aggtataagt gttgagaatg aaagcttgaa aattattttt taagtttcac attcacttca
      781 cagttttgag ttaaactttc gccaaccaag aaaaaaagga gaaattatga aagcaaaact
      841 aactttactt gctttgttgg gtactacggt gcttttagct aaagatatgg ttgttcctgc
      901 tagcgaactt ccaaataatg ccaaagaatt tatttctaaa aattttaaaa ccgctcaaat
      961 tggtttggtg aaaaaagata tagattctta tgatgtgatt ttaaatgatg gaactgaaat
     1021 tgattttatg atcaatggag agtggaaaga agttgatgga aaatataagg ctttgccaca
     1081 tactatctta cctaatgtta tgaaaaaagt gagtgcaact caaccaaatg ctcaaattct
     1141 tgaagtagac aaagaaatta atggttataa atttaagttt aataacaata tggaagttta
     1201 tacagatatg caaggaaata tcctaggtca aaaattagat taatttttga aaatttaact
     1261 cccttagaaa atttgatgca aaaatttgga agcatagtct tccaaatttt tattttttga
     1321 ttgcaaaact caaaatatat ttagttttaa aataatactg tattgataca agtgattgtt
     1381 tttttataaa attaaattta caaaatgtta cataagattt aaaatatttt ttttaaaaaa
     1441 taattattta taaatatttt gctaaaataa aagagatgta atcttaaatt taaggaagaa
     1501 taatgaatac tcctaaatgg actagtcacg atacaaggtg ggttttatct ctttttggaa
     1561 cagctattgg agccggcgta cttttgttgc ctattagtgc tgggcttggt ggattgatac
     1621 ctttgttagt tatacttgtt ttagcttttc ctatgactta cttagctcat agaaatttat
     1681 gtcgctttgt gctttcaagt tctaatccaa aagatgatat tacttttgtt gcagaaagtt
     1741 attttggcaa gggcggtgga tttttaatta cacttttgta tttttttgct attttgccta
     1801 ttttattggt ttatagtgct aatcttacaa caactttgct tgagttctta atcaatcagt
     1861 tcaatttcaa tgcagatctt actcatgctg ctcgttggtg ggtgagtttt ttgattgttg
     1921 gagttttggt tttgatttct attcttggtg aaaatgttgt aacaaaagca atgagttttc
     1981 ttgtttttcc ttttattata tttttattta ttttttcatt gcttttaatt ccacaatgga
     2041 atttatcgtt atttgcaaat gttgattttt ccgtaatttc aacaagtaat ttttgggtta
     2101 ctttatggct tgttattcct gtgatggtat ttagttttaa tcactctcct atcatttctt
     2161 cacttgcttg ttattgtaaa aaagaatatg gtggttatgc tgaacctcgc gctagaaaaa
     2221 ttatttcttt ggcaattatt cttatggttt ttgttgtaat gttttttgtt ttttcttgtg
     2281 ctttaacctt tacaccagaa gattttgcat cagcaaaaga tcaaaatatc aatattctta
     2341 cttttatagc aaataaattt cctgaagttt ctttactagc ttatgttgga cctattgttg
     2401 cacttgtggc tattagcaaa agtttcttag ggcattatct tggttctcaa gaaggcttaa
     2461 atggtatttt atataaagca agtaatggta gaattcaagg taaattcgct caaactttaa
     2521 cagcgatcat tacctttgct atcgcgtggc ttgttgcgta taaaaatcca agtgttatag
     2581 gaattatcga ggctattggt ggtcctgttt tggctatttt gcttttctta atgccgcttt
     2641 attgtattta tcgttttgat attttggcaa ggtttcgtaa taaattttta gatctttttg
     2701 ttttggtaat ggggatagtt gcaatttctg ctgcaattca tgatctttta taaattaagg
     2761 ataaaaaatg agtaatttaa gcatttttaa aataggtgtt ggcccttctt cttctcatac
     2821 tttagggcct atgcttgctg gaaatttatt ttgtaaaaaa gttgctaaaa agcttgatga
     2881 aattgataga gttgaggtta ctctttatgg ttctttgtcg ttaacaggca aaggacactt
     2941 gagtgataag gctgtgattt gggggttaaa tggcttagaa gctaaaaatt taagtgcggc
     3001 aatacaagat gaagtaaata aaaatgctat tgaaaatgct caaattgatt tttgtggcga
     3061 gaaaaaactt agttttaatt atgaaaaaga tttgatattt tctaaagatt ttttaccttt
     3121 acatgagaat ggtatgaaaa ttaaagctta tgattgtaaa ggtgggttag ttgatgagga
     3181 aacttattat tctgtaggtg gaggctttgt tttaacagct gcggaattag aaaaaaaagg
     3241 taaaaattct aaccaaaata aaaagaaaaa actagatata gagcttaata acgctaaaga
     3301 agctttagag ctttgcgata aaagagattg ggatttggca gagctttctt atcgttatga
     3361 attgcaattt cacactaaag aggaaatttg tgcttattgt cttgaaattt gggaagtgat
     3421 gcaagaagtg tattataatg gtacgcaccc gaatgaagat tatttgcctg gaaaacttca
     3481 tttaaagcgt agagctaaag gacttaaaga aagagtagcg atgacagctg atcctatggg
     3541 tattatcgat tttatttctt tatatgctat tgcgattgct gaagaaaatg ctagcggagc
     3601 aaaagtcgta accgcaccaa caaatggagc atgtgctgtt atccctgctg ttatgcttta
     3661 tcttaaaaat catactatag gttttagtga tgaaaaggtt atagagtttt tattaacagc
     3721 aatgcttata ggttcttttt ataagaaaaa tgcaagtatt agcggagcag aagcaggttg
     3781 tcaagcagaa attggtagtg ctagttctat ggcagctgcg gctatggcaa cagttttagg
     3841 agctaatgct tttaaagcat gtaatgctgc tgaaatggca atggaacatc atctaggtct
     3901 aacttgcgat ccagttgcag gacttgtgca aattccttgc atagaaagaa atgcctttgg
     3961 agccattaag gccataagtg ctgctagaat ggcaatgaca cgcaaatcca ctcctatggt
     4021 aagccttgat gaggttatag aaaccatgta tgaaacagga aaagatatga attataaata
     4081 taaagaaact tctttaggtg gtcttgctac aaatttaaaa acagtatgct aaagtgtttt
     4141 tacactttag tgtatttttt cattctttga cttaaaaatt ctttcatttc ttctttggaa
     4201 aaacttttaa gaatgcgaat ttgcttaaaa agcaagccaa gattgattac tcccatcact
     4261 aaaagcaata agcaaatcgt taaaaaaaga agatctatgg ctccaaattc attaatcata
     4321 gccaaacttg caaaaaatac actcgctaat aacaaaaaaa ataaaagcaa tatttgtttt
     4381 aattttgtct cattaaaatt atcgcaattt tgagtgaaat ttctaaaaag tatgatcttt
     4441 ttacccaaat ttgaaactaa aatttcatca ttttccttaa ataagccttc ttttaaactt
     4501 tgataaaaaa agatttcatt gtttaaattt aaatcatctt tgtagcttga tagggtgtag
     4561 tccttgtaaa aaaaggattt taattcattt ttcttttcta ttttaaataa tcttaaatca
     4621 tttctcgcat aaaaaaatcc actaaagttc ataaatgcca taagtatcac tccctaaaaa
     4681 attcctgtaa agtggcttga aattta
//
LOCUS       DARBAR010000121         4435 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.121, whole genome shotgun sequence.
ACCESSION   DARBAR010000121 DARBAR010000000
VERSION     DARBAR010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4435)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4435)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4435
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.121"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..233)
                     /locus_tag="SB815_001557"
     CDS             complement(<1..233)
                     /locus_tag="SB815_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907272.1"
                     /translation="MYRKELQTLLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTHASDFLSTGSLFSEKKLLEIKT"
     gene            complement(226..2160)
                     /locus_tag="SB815_001558"
     CDS             complement(226..2160)
                     /locus_tag="SB815_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HEG0907273.1"
                     /translation="MKEFLNSLSYGISSHEVSNEFKQILRELLANHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTVLKIEN
                     ENNNIIEVLGHIHDESIDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPHPLSENICSLKPHLDRLAYCFKITLDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILVQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADTRKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTHANLLENVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            2279..3301
                     /gene="ilvC"
                     /locus_tag="SB815_001559"
     CDS             2279..3301
                     /gene="ilvC"
                     /locus_tag="SB815_001559"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEG0907274.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVMSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            3305..4387
                     /locus_tag="SB815_001560"
     CDS             3305..4387
                     /locus_tag="SB815_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HEG0907275.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISLNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFILKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPELDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEVLKNQNIFFVDSKTI
                     GNSKANKIAKELSMPYIQRDVFLDNEDDVNYVKKQLESAVKLAQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKGVDLVYLSEIYGK"
BASE COUNT         1502 a          631 c          737 g         1565 t
ORIGIN      
        1 gttttaattt ctagtaattt tttttcgcta aaaagcgatc ctgtgcttaa aaaatcactt
       61 gcatgagtga agttgtattc ttcaaaaaaa agttttaaag tttcatcggg cttatatttt
      121 tcttttataa attcagcata aagttcgctt tgaaaattat ctgctccata aagaaagaaa
      181 aaattaggta ttgaatcttt agaaagcagg gtttggagct cttttctata cattttcttc
      241 ctttataagt ctttgggtga ttttagcata aatttttgcc ataactatat ccgcttccat
      301 gatttgcact tcaacatttt ctagtaaatt cgcatgcgta tcataaagga ttatatccgc
      361 tcctttgatt tcatcatcta gtttagctat gcaaactccg tcattttgca caactaaagc
      421 tttaaatttt ttacctatat ttttagctgc ccatctagca aattttctat ccataaaatc
      481 aaaagcaacc ttatccgcct ctctttcaag tgtgctaaga ttctcgcaag tgctttctat
      541 gtttaaaagt agataattaa aaagtttttc atcgtttttt tgtttggctt ttaaaagtct
      601 gtgtaaaata agatcagaat accttcttat agggcttgta aaatgtgagt atttatcaaa
      661 acctaagcca aaatgccccg catttacgct agagtattcc gctttttttt gtgctttgat
      721 gatgagttta tctacttctg ctcttaaatt taattcatca gctaaagctt gtatgtcgcg
      781 tatgagctca ggaagattgg gtttaaaatt tacatcgatt ccgagttcgc gtaattcatt
      841 taaaagctta tcgatttttc ttgtatcagc acttaagtga tttctaaaaa cgcctatatc
      901 tatgagtttt gctgcggctt tattggctaa aagcatacaa tcttcgatca aattatgcga
      961 aggcgtgtct ttttcaaaaa ctgtgctttt tagacttaaa ttttcatcta aattcattct
     1021 taattcttcg gtgcgaaatt caaaggcatt tttaagacgc attttgcgta aattttttgt
     1081 gatttcaaaa agctcataaa gccatgaaag ttcttttaaa tcaggttttt gtaccaaaat
     1141 ttcatcaact tcatcgtaat taaaacggcg ttttgagttg ataatacctt caaaaagttc
     1201 ttctttgatg actttatttt catgatcgag tgtgatttta aaacaatacg ctaagcgatc
     1261 taaatgaggt tttaaagaac agatattttc acttaaagga tgcggtaaca taggtatagc
     1321 aatgtgcgga aaataaatag aaaatccacg atttcttgct tctttatcta tagcactata
     1381 agcataaaca tattcgctaa catcagcaat agctacataa atttctcgtt tttgagtgtc
     1441 aaaataaatc gcatcatcaa aatcttttgc atgtatagga tctatagtgc aaaaaggcaa
     1501 ggctcttaaa tccatgcgat tttcatacat actcgcatca acactatcgc cgtttgctag
     1561 ggcttctttg atacaagcgt cgctaaattc gttgttttta ttgaaaaggg ctaaagagat
     1621 tttttcatct atactttcat cgtggatatg ccctaaaact tctatgatat tgttattttc
     1681 attttctatt tttaaaactg ttcctaaagg tagtgctttt aaggattttt gagaagcttt
     1741 taaggcggtg cttaatcctg ttttgatatt cattccaagt acggcttcgc catacctttt
     1801 ggtgatcact aaagaggttt cattggctct ttttagaacc aaaatcacct ttgcactggg
     1861 gcgttttttc tttaaaggta gaagttttac tgcaactata tctttatagt ttgcaccttt
     1921 taggtttttg ttttctatca aaagatcttt tttaaaactt tcatcaaagc attgtaaaaa
     1981 acctgtacct ttgctcgaaa tatcaagcac cccaaaggca aaaccattgt taagatagta
     2041 tttgtttttg tgttctttaa tgatatgatt ggctaaaagc tctcttaaaa tttgtttaaa
     2101 ttcattgctt acttcgtgag agctaatgcc ataactaaga ctgtttaaaa attctttcac
     2161 ttttaatact ttatgatttt ttgtaaaatt cttacataaa gtttataaaa aaaatatgaa
     2221 atttatactt taattgctat aataatacct ttaatttttg aatttttaag gagtgaatat
     2281 ggctattaca gtatattatg ataaagattg tgatttaaat ttaatcaaat caaaaaaagt
     2341 agcaattata ggttttggct ctcaaggaca cgctcatgcg atgaatttaa gggataatgg
     2401 cgtaaatgta actatcggac ttcgcgaagg tagtgtaagt gctgttaaag caaaaaatgc
     2461 tggttttgaa gtaatgagtg taagtgaagc ttctaagata gcggatgtga ttatgatttt
     2521 agctcctgat gaaattcaag cagatatttt taatgtcgaa ataaaaccaa atttaagtga
     2581 aggtaaggct atagcttttg cacacggttt taatatccat tatggtcaaa ttgttgttcc
     2641 aaaaggtgta gatgttatca tgatagcacc taaagcacca ggacatacag taagaaatga
     2701 atttactcta ggtggtggca ctccttgttt aatagctatc catcaagatg aaagtaaaaa
     2761 tgctaaaaat ttagctttaa gttatgcaag cgcgattggg ggtggacgca caggcattat
     2821 agaaacaacc tttaaagctg aaacagaaac agatcttttt ggtgaacaag ccgtgctttg
     2881 tggtggactt agtgctttga ttcaagcagg ttttgagact ttagttgaag caggttatga
     2941 acctgaaatg gcttattttg agtgcttgca tgaaatgaaa ctcattgtgg atttgattta
     3001 tcaaggtggt attgcagata tgcgttattc tatttcaaat actgcagaat acggcgatta
     3061 catcacaggg ccaaagatta tcactgaaga gactaaaaaa gcgatgaaag gtgttttaaa
     3121 agatatacaa aatggtgttt ttgcaaaaga ttttatctta gaacgccgtg caggttttgc
     3181 tagaatgcat gcagaacgca aaaatatgaa tgattctttg atagaaaaaa caggacgcaa
     3241 tttgcgtgct atgatgcctt ggatcagtgc taaaaaatta gtagataaag ataagaacta
     3301 aacattgtca aagaaaaaat tagttcaaat tcagcgttat ttaatcatag ctatactttt
     3361 tttactttgc atagctttag ctttgggaat tttagtaaaa tatcaaaatt cccaagatgt
     3421 ttcttctgtt aagccggatt attttattga taagcaagaa gatttaattt cattaaataa
     3481 agatcattat gaaattggta tttttcaaga gaatgagttt gataataata aatctgtaag
     3541 tattttagag caaaaaattc aagaaattga tgatttaaat acaagtttaa atgagcaaaa
     3601 tttaagcagt gtggagcaga atttaagttt agagcaaaat cagagtttag aacaaaattt
     3661 tattctaaaa gatacaaatt taacccaaga tcaaaattta acttttaatg aagatattca
     3721 tttaaataaa atttctaaaa aaccaaaact tgctattatt atcgatgata tggcaaatgc
     3781 aagtcaggtt agaggtttaa aagctttaaa tttaaagtta aatccttctt tttttccgcc
     3841 agataaaaac catagcgaaa cgccaaaact tgctttaaaa tttgattttt atatggtgca
     3901 tttaccttta gcagcgatta attacaataa acctgagctt gatactttaa atccaaatga
     3961 tagcaaagaa agaattttta aaaaaattaa gcaaattaaa aaagatttta aggatttaag
     4021 atatatcaat aatcacacag gaagtttatt tacaagcaat gaagaagcta tgagaaagct
     4081 ttatgaggtt ttaaaaaatc aaaatatatt ttttgtagat tctaaaacta taggaaattc
     4141 taaggcaaat aaaatcgcta aagaactcag tatgccttat atacaaagag atgtgttttt
     4201 ggataatgaa gatgatgtta attatgttaa aaaacaactc gaaagtgcag taaaacttgc
     4261 acaaaaaaaa ggttttgtta tagccatagg acatcctagg aaaaatactt ttaaagcttt
     4321 agagcaaagt aaggatttgt taaaaggcgt tgatcttgtg tatttgagtg aaatttatgg
     4381 caagtgaaat tttgcctgat gagtttttag aactttttaa agatttaaaa aagcc
//
LOCUS       DARBAR010000122         4264 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.122, whole genome shotgun sequence.
ACCESSION   DARBAR010000122 DARBAR010000000
VERSION     DARBAR010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4264)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4264)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4264
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.122"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..919
                     /locus_tag="SB815_001561"
     CDS             <1..919
                     /locus_tag="SB815_001561"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEG0907276.1"
                     /translation="RFYHIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKL
                     ECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKT
                     LDYTILRKNQNSKEKLSFPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVV
                     EEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEE
                     LKEKLKDSFKKIYNPLFKGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFNTTLN
                     ALADQISLEKMIKINYNFLHSINGQKGKL"
     gene            979..1194
                     /locus_tag="SB815_001562"
     CDS             979..1194
                     /locus_tag="SB815_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEG0907277.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            1196..1915
                     /locus_tag="SB815_001563"
     CDS             1196..1915
                     /locus_tag="SB815_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEG0907278.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGADKKLMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPIMYETFKKVVDEDFSEIFAKQKAKSLIFWGKSDEATPLYCGEKMHQFLKNSTFYPL
                     EGDHFFFLKHSAFIAQKIKEI"
     gene            1916..3343
                     /locus_tag="SB815_001564"
     CDS             1916..3343
                     /locus_tag="SB815_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEG0907279.1"
                     /translation="MLINTLYFINSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLVYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFTILALRFSFLFNLFSLPFALLSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINANLSQDTQIYIAEAGAR
                     LKGDIDEITHFLQPQISIVGEIGNAHLEYFKSVENIRSTKLEALNSERLEKAFLHSST
                     QKEEDKLISLYDDKLSLIHSSLEGLEFKVDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(3401..>4264)
                     /locus_tag="SB815_001565"
     CDS             complement(3401..>4264)
                     /locus_tag="SB815_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907280.1"
                     /translation="ERKAENNSYTSDIKKYLGIDKYYTNIDMAETIKQYYNQFNQIVN
                     YAFNDTNKTSFTEADINSMPKGISELSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAE
                     QLGMFGHINIGLQPLNFTPQSMQTQNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFM
                     SFLKSTGVSPREGSATLNPIAKSYAEAMAKESFDGSLASLDDIMTGKVDFASLLKGYA
                     QEGWLDADIYAMDKGVAWQNTSIGYGGAWFDREFNQVKANGWKASSESINSYVGSIMD
                     RLNNLMGQTRV"
BASE COUNT         1519 a          638 c          616 g         1491 t
ORIGIN      
        1 aagattttat catatcccaa gtgaaaaaat gaattctaaa acttttagca ccaaagctta
       61 taaaaaagaa aaagaactct tcatcaaaca aggaggtttt tttagcaaag gctttttaaa
      121 agaaaataaa ctagagtgcg aatgcgtgat caatcttatc catggtagag atggagaaga
      181 tggaaaaatt gcggctttat ttgagtttta ttctattaaa tttataggac ctaggcttga
      241 agctagtgta ttatctttta acaaagaact taccaaactt tatgccaaaa gcgttggagt
      301 aaaaacactt gattatacca tactaagaaa aaatcaaaac tctaaagaaa agcttagttt
      361 tccttgcatt atcaaacctg caagacttgg aagtagtata ggtattagta tagtaaaaga
      421 tgaaaaagat ttagaatacg ccaaagatgt aggttttgaa tttgacaatg atcttgtagt
      481 agaagaattt aaaaacaata tcaaagaata caatcttgca ggatgtatga tcaatgatga
      541 gtttgttttt tccattatag aagagccaaa gaaaaaagaa tttttagact ttgaacaaaa
      601 atatcttagc ttttcaggac acaatgaact tatagaagca gatttaagcg aagaattaaa
      661 agaaaaactc aaagatagct ttaaaaagat ctacaatcct ttgtttaaag gtgctttaat
      721 acgctgtgat ttttttatac tggataatga aatatattta aatgaaatca acccaaaccc
      781 tggttctttg gctaattatc tttttaaaga ttttaatacc actttaaacg ctttagctga
      841 tcaaatttca cttgaaaaaa tgataaaaat caattacaac ttccttcact ccattaacgg
      901 acaaaaagga aaattataag cttttaagtc aaaatgcgct aaattataca taaaatttag
      961 cgtattttag gaagaaaaat gctctctttt aaacaagatg aaatttacac tgccaccgaa
     1021 gtggtaagaa attttagccc cattatggaa aaactcaaaa aaagcgaaag tggaaaaata
     1081 gttattttaa aaaataacaa atttgaagct gtaatgctta gtatgaaaga atttgaacgc
     1141 ttacaaaatg ccatgcaact tttagaaaat atctacaaaa atcaaaaggc ttaaaatggc
     1201 tcaaactcaa ctttcttata aaaacaaaac ttatcaaatt tcttatgaaa ttttaggtga
     1261 tctttcctta ccgcaaatac ttatcttaca cggctgggga gctgataaaa aacttatgaa
     1321 acaaagtttt tgtccttttt tgaaagattt ttgtcaaatt tatatggatt tagcaggttt
     1381 tggaaattca agcgtggaag aaattttaaa cactcaagat tatgccaata tcacagaact
     1441 ttttttaaaa caaaaaaaac tcaatgtctg ttttttcatg gggcattctt ttggtggaaa
     1501 agtaagtacc ctactcgcaa aagaaaaaga caccctaatc ttactttcaa gtgcaggaat
     1561 tttggctaaa aaatccctaa aagtgcgttt taaaatccgt atttttaaaa ttttaaaact
     1621 ctttggtttg ggaaaatttt atcgctattt tgctagtaaa gatggagcaa atcttagtcc
     1681 tataatgtat gaaaccttta aaaaggttgt tgatgaggat tttagtgaaa tttttgccaa
     1741 gcaaaaggct aaaagcttga ttttttgggg aaaaagcgat gaagctacgc ctttgtattg
     1801 tggtgaaaaa atgcatcaat ttttaaaaaa tagtactttt tatcctttag agggggatca
     1861 ttttttcttt ttaaaacact ctgctttcat agctcaaaaa atcaaggaaa tttaaatgct
     1921 tatcaatact ctttatttta tcaattcttt attttttaat ttttgtatag ctttttatct
     1981 tatgagtgct ttacaatggt attcttataa atttaaacgc gtgttttttc attatcataa
     2041 acctttgtgg catttgtatt ttttatttat tccttatttt ttattcttag cttttccttt
     2101 atactctttg gtatattttg cattgatcca tactccgatt ttgtattttt ggaataaagg
     2161 catagataaa aagcttgttt ttacaagtaa ggttaaatgg ttttttgttt ttgtttttgt
     2221 ttataatgct atttttacca tccttgcttt gcgtttttct tttcttttta atctttttag
     2281 tcttcctttt gctttattga gtcttaaaat ttatgagttt tttacaaatt tatattataa
     2341 aaaacaagcc aaagccaaac taagagccaa tgaaaattta aaaatcatac tcattaccgc
     2401 aagttttgga aaaacaagta ttaaaaattt tttatacgaa cttttaaaag atgactttaa
     2461 aagctacaaa acaccacgct ctgtcaatac cttactaggt atagttgctg atatcaatgc
     2521 taatttaagt caagatactc aaatttacat agctgaagca ggcgctagac ttaaaggcga
     2581 tatcgatgaa atcacgcatt ttttacaacc tcaaatcagc atagtaggag agataggcaa
     2641 tgcacattta gagtatttta aaagtgttga aaatatccgc tcaaccaaac ttgaagcctt
     2701 aaattccgaa agactagaaa aggctttttt acactctagc acccaaaaag aagaagataa
     2761 actcatcagc ctttatgatg ataaattaag tcttattcat tcaagtcttg aaggtttaga
     2821 atttaaagtc gatatagaaa ataaatccta tgattttaaa agtcaaattt taggggattt
     2881 taatgcgcaa aatctttgtg tttgtatact ttgtgctcat tatcttggca taaaactaga
     2941 aaaaattcaa aagcaagttt taaatataaa ttccgtagaa catcgcttgc aagtgctttc
     3001 aagagagcct aaatttatca tagatgatgg ttttaatgga aattttaaag gtatgagcac
     3061 aagctataaa ctttgtaaaa gctataaagg acgcaaagtt ttagtaagtc ctggtatagt
     3121 agaagtaagc gaagaagaaa atataaaact tgccaaaatc atcaatgagt gttttgatct
     3181 tgctatcatt agtgcacaaa tcaatgctga aattttcaaa aaagagttaa aaataaaaac
     3241 cattatactt aaagaaaaga gtcaactagt tcaaactcta gctaaagaaa caaaacacgg
     3301 agatttgata ctcttttcaa acgatgcacc tagctttatg tgattcgcat aagtatttgc
     3361 aaatgtcatc atttttaatt tgacttcgtg caaatacttc ctaaacccta gtttgcccca
     3421 taagattatt taatctatcc attatagatc caacataaga attgatactt tcactgcttg
     3481 ctttccaacc attagctttt acttgattaa attctctatc aaaccaagct ccaccataac
     3541 ctatgcttgt attttgccaa gcaacccctt tatccattgc atatatatct gcatcaagcc
     3601 aaccctcttg tgcatagcct tttaacaaac ttgcaaaatc aactttacct gtcataatgt
     3661 catctaaaga agctaaagag ccatcaaagc tttctttagc catagcttca gcataagact
     3721 tagctatagg atttaatgtt gcactacctt ctcttggcga tacacccgtt gattttaaaa
     3781 aactcataaa caaagcttct ttagaataac ttccatcttc attttgtgga taaactgaca
     3841 tatcaggatt aaaagtatct attgcagtgt ctttatctaa attttgagtt tgcatacttt
     3901 gcggagtgaa atttaatggt tgtaagccta tattaatatg tccaaacatt cctaattgtt
     3961 ctgcttcatt atattgctct tgtgtattat aatagtttgt tattgttagc ttgtcataat
     4021 ttttcggcat aatacctata gttttatcag atgataattc actaattccc ttaggcatag
     4081 aatttatatc tgcttcagtg aaacttgttt tattggtatc attaaaagca taattaacaa
     4141 tttgattaaa ttgattataa tattgtttta tggtttcagc catatctatg tttgtataat
     4201 atttatctat acctaaatat ttttttatat ctgaagtata agagttattt tcagccttcc
     4261 tctc
//
LOCUS       DARBAR010000123         4160 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.123, whole genome shotgun sequence.
ACCESSION   DARBAR010000123 DARBAR010000000
VERSION     DARBAR010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4160)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4160)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4160
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.123"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(18..1260)
                     /locus_tag="SB815_001566"
                     /pseudo
     CDS             complement(18..1260)
                     /locus_tag="SB815_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
     gene            complement(1260..1775)
                     /locus_tag="SB815_001567"
     CDS             complement(1260..1775)
                     /locus_tag="SB815_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEG0907281.1"
                     /translation="MKKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSNFNGIKEVNFRVGDDKECLKLVF
                     INKANFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            complement(1776..2783)
                     /gene="tsaD"
                     /locus_tag="SB815_001568"
     CDS             complement(1776..2783)
                     /gene="tsaD"
                     /locus_tag="SB815_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEG0907282.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKMLKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDASLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNTPLKHSKELAFSFSGLKNAVRL
                     EILKHENLNEDTKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNANLKLAPLKFCSDNALMIARAAVDAYEKKEFVSVEEDILSPKNKNFSR
                     I"
     gene            complement(2780..>4160)
                     /locus_tag="SB815_001569"
     CDS             complement(2780..>4160)
                     /locus_tag="SB815_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HEG0907283.1"
                     /translation="TILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQGDEPGG
                     FHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPDYKTVQ
                     RIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASKYPDLE
                     NIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFANEASK
                     NLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINKELEVKLFDDRILLSL
                     KNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYLEFSDA
                     FNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHSKDESGILVHKKNM
                     QTQYSLDMAGKIYRAEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMARSKDKF
                     LGSILVEFE"
BASE COUNT         1349 a          762 c          565 g         1484 t
ORIGIN      
        1 atggtcatta ggtttcctta aattttatct atctttagtg acattttgtc atctttttcg
       61 ctaaattgat acaacaaatc ctcgcaagga taagagatac atttttcttt ataatctttt
      121 tttgaatttt gttttatttt ttctagcatt aagggaagtt ctttcttaat caaaagtttt
      181 accggaattc ccatgccatg atttaagttt ttaataaatt ttccatcaac ttgagattct
      241 ttagtaatag aatgcaaagt tacatcaaaa ccaagtttct caagctcttc atagaacata
      301 gttttttctt ttaaagaaac atactcatcg tataaggaat gataacttat aaagcaagtt
      361 tttaaacatt ttgattgttt taaaagatga tcttcctcta aaagatttcg aatttttctt
      421 cttgcgggag aaaaaaaacg aggcgatgaa gaattactcg tccaaaaagt ttttgtcgaa
      481 caatgtgttt taatatgatg aaaaaaatca aaagtagcaa attcactata ctgcataaaa
      541 tctatttcct ttccaaaacc tacaactctc cataaaaact tagcgtatgc agaattatcc
      601 aacactccat ctactaacca aggcgcaatc ttagctgcca aatgcgctaa atatcccccg
      661 tgagaacccc ctatcatgat aattggtata cccccccccc atagtatcaa aaggagcgtg
      721 ttttttaagg taaagtgcga catttaaaag atcttgagct tgcatgatcc caaaattttg
      781 atactcgttt tttgtcggtt gcaaactcac atgcaaattt aaaaaataat ttggcgtaaa
      841 attacctttt tgcttgcctt caactatttg attatttaca aaatgaaaaa tttcactcat
      901 tgctttatag tcttgaattt tatcaacatc ataaggaagc ttgatatccg cagcttcaca
      961 acttgctttt aaaataagct tgtctatatc atccataaaa aagcttgatc cggtttgagg
     1021 acgattgcca atacaatgat aatttactcc aactacagca gtattaaatt gccttaccat
     1081 ataatcacca acatattgga tcgatgatat atcatcaccc ataccttgca ccacaaacac
     1141 caaggcttca ggtgtttttt catcatcata ccaaagctta aattcaagct ttgattctct
     1201 ttttatacca agctctacat catcacaaga gtcaatctca taagctttac tcactatcat
     1261 tacattcccc ctattaaaag ataagtttta ctcgctaggt ttttaaaatt ttcattctta
     1321 cttaaaatca cacaagcttt attactagaa gagcttgtaa agtctatatt ttctaaatct
     1381 tcatggcttt gattagctgc gttgatgata gcatttttac ttgcttcatt gcttgaaatt
     1441 cccatgagta taaaattagc tttatttata aaaacaagtt ttaagcattc tttatcatcg
     1501 cctacgcgaa aatttacttc ttttataccg ttaaaattac taagatcaac attttcaacc
     1561 ccgcttacat tactcatcgt ttttatagag cttaaatgat cattttttaa agtataaatg
     1621 cttatatcat tgatcaaagt tttaaggttg tttaaagact tgctaacttc agcttcatcc
     1681 ttacttgaac tcatttttgg caaagcaata gcggctaaaa ttcccaaaat aacgatcaca
     1741 aaaacaagtt ctaatatagt aaaagctttt ttcatctata tccttgaaaa atttttattt
     1801 ttagggctta aaatatcttc ttctacactt acaaattcct ttttttcata agcatcaact
     1861 gcggctcttg ctatcatcaa agcattatca gagcagaatt ttaaaggagc tagttttaaa
     1921 tttgcattat atttttgaca taaattttgc aaacgcgaac gcaagttaag atttgcacta
     1981 gctccaccta caacgccaaa atttttaaat ttataaagat taaaaatttt ttctaattta
     2041 tccatgatat gatcacaagc tgtattttca aaggcatagg ctatttctgc ttttgtgtct
     2101 tcatttaaat tttcatgttt taaaatttcc aaacgcactg catttttaag ccctgaaaaa
     2161 ctgaaagcga gttctttaga atgctttaaa ggtgtgttaa aagagatatt tttaagtttg
     2221 gcattttttg ctaaattttc tatgatgacc ccaccagggt aacctaaatt catcatttta
     2281 gccactttat caaaactttc tccaaagcta tcatcatttg tacttgctaa aagctctaag
     2341 cttgcatcat ctttaagata aagcaccatg gtatgcccac cactaacaag caaaattccc
     2401 atatctaaag aaattttttc ttccaaaaaa agactataaa tatgaccttt aagatgattt
     2461 atagggatta agggtaaatt tagcgcactt gctaaggttt ttgccataga aattccactg
     2521 agcaaagaaa cactaagtcc aggttcattt gtcacagcta tggcacaaag atttttaaaa
     2581 tgctctttgc attgcttaag catctttggt aaagcctcgc tatgaagtct tgcagcaagt
     2641 tcaggtacca ctcccccata gatactatga tctaattctt gggaaatttt tttatgaaat
     2701 ttacattcta aggtgttttt atcaatgata gctatagaac tatcatcaca agaactttct
     2761 atagctagga taagattttt cattcaaatt ccactaaaat agaacctaag aatttatctt
     2821 ttgatcttgc cattttaaga gtatttaaat ccaaattttt agcgtttttg atcaacttgc
     2881 tattgatatt tgcctctaaa agttgttgca aatttgcacc tcttaactca taaaattccg
     2941 ctctataaat tttacctgcc atgtctaaag agtattgtgt ttgcatattt tttttatgaa
     3001 ctaaaatacc actttcatct tttgagtgat caaagcctat gatatttacg cgcacattag
     3061 ctatctttgg aataagaaaa ttctctttta cttttacctt ggttccaaaa ggaactgtgg
     3121 tttcattgcc atcaacttga aaagttactt cattaaaagc atcgctaaat tctaaatact
     3181 caggatataa tcttgtttga aaacgattgc catattggat ataaaaagaa tttccttctg
     3241 cgataacagc cgtaagttca ttgcttgtgt tataatttaa ctctttattt accggaaaag
     3301 gcacatagtt gataaccttt cttggatttt ttaaagaaag taaaattcta tcatcaaaaa
     3361 gttttacttc aagctcttta tttatggctt tatcaactcc ttgtggagtg agttcgaaat
     3421 ctctgctaaa ttcaattcct gcagttttta aataattttc aattgccaaa agatgataat
     3481 aagctcttaa atttacaggc agatttttac tcgcttcatt tgcaaaagcg gctttgtgat
     3541 ttgaaatcac aaaataagtt aaagctttaa gcatttccgt atcgccaagc tcttgggttt
     3601 tggtgttttt aagatgataa gcatgctttg gatcagcaag cgaagaattg acactattta
     3661 cggtttgagt ggcgatattt tcaagatcag ggtatttgct tgcattgatt tcgcttgtat
     3721 caatcacgct tgaatttccc caacgcttag gattttgcat cgcatcgata taagtgggtt
     3781 tataaaaacc ccaaccatcg tgaagattga tcaccatact aacttcagga agtaaaataa
     3841 gctctttaat gcgttgaacg gttttataat caggatcttt tgggctaatg cttgcaaatt
     3901 tacggtttaa atccccatta ttcccacgag aacgcttgat aatgctatca aaagctaaat
     3961 ttggagccac tataatctta cccttagtga tattataatc actcaaaagt aaacttgccg
     4021 catgaaatcc accaggctca tcgccttgaa ttccaccaaa aattaaaact gtattattat
     4081 catctagact ttttccattt tctcctacgc taaagtctag ctctaaagca aaaatgcttg
     4141 ttataaaaaa taaaattgtt
//
LOCUS       DARBAR010000124         4020 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.124, whole genome shotgun sequence.
ACCESSION   DARBAR010000124 DARBAR010000000
VERSION     DARBAR010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4020)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4020)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4020
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.124"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..683)
                     /locus_tag="SB815_001570"
     CDS             complement(<1..683)
                     /locus_tag="SB815_001570"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEG0907284.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLH"
     gene            complement(685..1143)
                     /locus_tag="SB815_001571"
     CDS             complement(685..1143)
                     /locus_tag="SB815_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEG0907285.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKDGVKEVELNSSYWKARYIGARRY"
     gene            complement(1152..2321)
                     /gene="nhaA"
                     /locus_tag="SB815_001572"
     CDS             complement(1152..2321)
                     /gene="nhaA"
                     /locus_tag="SB815_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG0907286.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIAAFVIAGLAILVMLILNLLGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIVTAFFIPMQTKNGEAFLEEIYESLKFWIAFIILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            complement(2318..3466)
                     /gene="nhaA"
                     /locus_tag="SB815_001573"
     CDS             complement(2318..3466)
                     /gene="nhaA"
                     /locus_tag="SB815_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG0907287.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEYADKLAILVASFLSAIVGFIYLKIVK"
     gene            complement(3609..3791)
                     /locus_tag="SB815_001574"
     CDS             complement(3609..3791)
                     /locus_tag="SB815_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HEG0907288.1"
                     /translation="MVSDVSMGNVNLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
BASE COUNT         1584 a          729 c          485 g         1222 t
ORIGIN      
        1 aaatgtaatt ttgctttatg atttttcaaa tctatatttt ctctttcttt aagaaattca
       61 actatagcat ctcctgaatg aattaatttt gttttatcac caaaatactt acttaaagaa
      121 cgtcctagta aagggaaatg agtgcaagcg agtatcaaag catctggagt tgtgatattt
      181 ttaaaataat attccatagc actttgcaaa aaatctcctt caaaaatacc ttcttcaacc
      241 ataggcacaa aaagccctgt agctaaagca tttatatttg tatatccttg agataacaaa
      301 cgcttttgat attcttctga tttaatggtt gcttttgtcg caatgactaa aatttcttta
      361 tttttatcat gcaaagcttt tatcgttgct tcaacccctg catcaattac gccatatact
      421 ggaaaatgtg cttttgctct taaagcatct aaagcataag cactagcagt attacatgca
      481 atgataagca tatcaatttg aaattgttca aaaaaatcca atgcttcaag acagaacttt
      541 ataatagtat ctttatcttt cactccataa ggaactcttg cggtatctcc ataatagata
      601 atttcatcaa aaagcctagc ttcatagaga gattttaaaa cactaagccc tcctactccg
      661 ctatcaaata cacctatttt cactttaata ccttcttgct cctatataac gagccttcca
      721 ataagaacta tttagctcga cttcttttac tccatcttta gtagataaat gtataaattt
      781 tcccttgctc atataaatac caacatgcat accatttggc cctctacctg tcttaaaaaa
      841 taccaaatct cctgtttgca attttgattt agaaactttt cttccagaac ctaattgagt
      901 ttttgtagtg cgaggtatgc gtatattaag ctgagctaat gcgctctgtg taaatcctga
      961 acaatcagca ccttttttac tagttccacc taaaacataa ggggtttttt tccattcatt
     1021 tgcaataacc ttgagccttg cttctttatt tgtgttgtaa ctaggacgat agtttagatt
     1081 ctgataaaaa ctacatccac ttataaaaaa tataatcgtg atgatgaaaa aaatatgcct
     1141 catcaatccc cttaagatcg agtagtaaag aatttaagat aaataaaacc ccaaatccca
     1201 gaacaaaatg aggctatgag aatagctaag ttatctgcat aattaaaaat atcactaact
     1261 tcatacgcca atccatcaat aaacaaactc attgtaaaac caattcctgt aagtatgcaa
     1321 accccataaa gttgtttcaa atttgaacct tggggcaaag ctgcaaattt aaagcggatt
     1381 gccaaataag aaaataaaaa tacacccact tgtttaccca caaaaagccc taagaaaata
     1441 cctatactta cacctgaaaa aattgctcct atatcgatat tggataaatt tactccagcg
     1501 ttagcaaaag caaataaagg taaaataata aaagcaatcc aaaattttaa gctttcataa
     1561 atttcttcta aaaatgcttc cccattttta gtttgcatcg gtataaaaaa tgctgttaca
     1621 attccagcta aagttgcatg tactccactt tttaaaacac taatccaaag aataactgag
     1681 caaataaaat aaaaagactt tcttgttatc cctaaaagat ttaaaataag cattaccaaa
     1741 atagcaagtc ctgcaattac aaaagcagct attgataatt ttgtcgtata aaaaatagct
     1801 ataattaaaa tagcacccac atcatcaaaa atagccaaag aaagtaagaa aatttttaaa
     1861 cttgatggaa tgtgcttgcc gcacatcatt aaaatcgcta aggcaaacgc tgtatctgta
     1921 gctgtaggta ttgcccaacc ttttaaagta taagcatctc ctatattcac caaagcaaac
     1981 aacattgctg gtataagtat accccctaac gcagccataa aaggcaaaac aatattttta
     2041 ggatttttaa aatctccgtg caaaaattcc ttcttaagct caagccctat agcaaagaaa
     2101 aatatagata taagcccatc atttatccaa agtaaaaaag gcttgttaag ctcaaattca
     2161 cctacactaa atccgacttt taaatttaga aattctcgat aatgttcgct aaaagacccg
     2221 ttttgcacaa gcaaagcaag caaagtgcaa actataagta aaacgccgcc aaaagcctca
     2281 tttaaaacta aagtttttaa tttatgtact atattattca tttaacaatc ttaagataaa
     2341 taaaaccaac aatggcactt aaaaaactag ctactaaaat agcaagttta tccgcatatt
     2401 caaaaatatc actattttta taagccaaac catcaataaa caagctcatc gtaaaaccga
     2461 tgcctgttaa aatacatata ccataaaatt ttccatattt aatattttca ggtaattttg
     2521 caagtttaag tttgatagca ataaaacaaa aagtgaaaac acctaattgt tttcctaaaa
     2581 atagtcctaa aataatccca agacttacag gagaaaatac tgaaccaaga tgcatatctc
     2641 taatatcaat tccagcattg gcaaaagcaa ataaaggtaa aataaaataa actacccaag
     2701 gatttaaatc cttaagaact tcatgtaaat aaggtttttt attttttgta tcaagaggta
     2761 taaacaaaga aatgatcaca ccagccaaag ttgcatgcac tccactttta agcatagcta
     2821 tccacaacac aacacctacc aacacgtaca aagaaagatg ggtgatgtga taataattta
     2881 acaaaagcag agcaaatata caaaacaaac aaataataat tgctaaagct gaaagctgat
     2941 ctgtataaaa caaagcaata ataacaatag cacccaaatc atcaaaaata gctaaagaga
     3001 gtaaaaaaag ttttaaactt gtaggaattt tatttcccaa aagcattaaa atacccactg
     3061 caaaagctat atcagttgct gtaggtattg cccaaccttt catagcaaaa tcatgagaat
     3121 aattaatagc aataaaaatt aaagccggag taatcatacc ccctaaagct ccaaatatag
     3181 gtaaagatac agctcttata tttttaagtt gcccacgtaa aatttcatat tttaactcaa
     3241 gccctataca tagaaaaaat atagctatca aaccatcatt tatccataaa tccaacgatt
     3301 ttgaaatttg aaaatgatca aatcctactg taaaattagc atgaaaaaaa tctgtataaa
     3361 taacacttaa agaagaattt ttacataata aagctaaaaa tgtaaaaaat ataagcaaaa
     3421 taccagggaa agtttcactt aaaaccatct tctttatcat ttgcatcctt gctcctaagt
     3481 aaatatttgt aaaaatttaa tacgataaat aaaatggtaa aattataacg aaaaaatact
     3541 aaagaaataa ttatttaaaa aaacaagccc aagataccaa aaagttctta agcttgttct
     3601 taagatattt aagcgtaaat atccaaacca ctagagctag aagcttgtgg agcggaggct
     3661 tgagagacac cttccatacc ttcgatgagt tcattcatca atgcctcgtt tgtgtccata
     3721 gattttttca aaactgaagt attaacagca gtcattaaat taacattacc catagaaaca
     3781 tctgaaacca tacatcctcc ttttagattg agtcttaaga ctttatttaa atcggatgat
     3841 atttttaaaa cttaatattt tttactaaac tttttaaaat ttttcaaggg aaccaatatc
     3901 tgaaattaaa aatcataaat tttttaagat aaaatcctat tttaaaaatt tttacactat
     3961 gaaacaataa gcaaaatata aatgattgat gcttttaaaa gcgaattaaa tggataaaaa
//
LOCUS       DARBAR010000125         3985 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.125, whole genome shotgun sequence.
ACCESSION   DARBAR010000125 DARBAR010000000
VERSION     DARBAR010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3985)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3985)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3985
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.125"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            110..1465
                     /locus_tag="SB815_001575"
     CDS             110..1465
                     /locus_tag="SB815_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEG0907289.1"
                     /translation="MKHYEVIIIGFGKGGKTLAAKLAMLGKKVALIEEDENMYGGTCI
                     NVGCIPSKSLVKNSLCADKNANWEIKQNFYYNAILEEKQLSAMLRQKNYDKLNALENI
                     TLYLGKASFINEKTLLIQGEKEVQISADRIYINTGSIPIIPDIKGLDQSKNVLTSKEL
                     MAQENLPKHLVIIGGGYIALEFACIYANFGSKVTLLQRNDTFLGKEDKDFADLIFQNL
                     ENKQIDIRLGVQFKEIKDFDQKSIVFFTQDHQDFEIECDMILLATGRKANTLGLSCDK
                     AGIQLDKRGFIIVDDTLKTNKDSIYALGDVNGGLQFTYVSLDDYRIAYAPFRQQNYTK
                     SKRKVIPYSVFIDPPFSRVGLNEKESIDAGYRIKVVKLPVVAIPKAQVLKKTYGLLKA
                     IINEENDEILGAMLFCEESHEMINIVKLAMDTNLKYQVLRDQIYTHPTMSESFNDLFD
                     I"
     gene            complement(1443..2315)
                     /locus_tag="SB815_001576"
     CDS             complement(1443..2315)
                     /locus_tag="SB815_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HEG0907290.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNEEKNKHLKDFFSQRPYACYNAIRRFCDKSFKANERVKTLIYDVDKGLTCFKFLPEE
                     QMIFSFDEDFELFLGYNHNVYEEGFWAFSLKFKKYTISQCNFCFTLENNLLLSCIQGY
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQATLGVHEKNQIRSQKGK
                     EKGYFVDYQKIWLENGGELIKIDKHKYYKLHHSQKNLEEIPSQKRSMYKKRFTMLEGI
                     RQNLKNLFRYQINH"
     gene            complement(2308..3414)
                     /gene="rseP"
                     /locus_tag="SB815_001577"
     CDS             complement(2308..3414)
                     /gene="rseP"
                     /locus_tag="SB815_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEG0907291.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSALPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLSKLAPQIGSIAPNSAAQDIGLQ
                     KNDTILEINGIRIQSFDEISKHLSLEPLKILIDREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGISPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKI
                     PQRAFEYLSYAGMAILLSLMLFATYNDISRIAGE"
     gene            complement(3411..3947)
                     /gene="pgsA"
                     /locus_tag="SB815_001578"
     CDS             complement(3411..3947)
                     /gene="pgsA"
                     /locus_tag="SB815_001578"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEG0907292.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
BASE COUNT         1472 a          551 c          598 g         1364 t
ORIGIN      
        1 aatcaaaaat acaaaaatat catattaaaa atactgtttt agtagataaa atagattctt
       61 taatgaaaga tatcatcaat ataagcaaaa aataaattaa ggaagagaaa tgaagcatta
      121 tgaagttatt attattggct ttggtaaggg tggaaaaact ttagcggcaa aacttgcaat
      181 gctaggaaaa aaagttgctc ttatagaaga agatgaaaat atgtacggag ggacttgcat
      241 taatgttggt tgtattcctt ctaagtcttt ggtaaaaaac tctctttgtg ctgataaaaa
      301 tgcaaattgg gaaataaaac agaattttta ttacaatgct attttagaag aaaaacaatt
      361 aagtgcaatg ttaagacaaa aaaattatga taagttaaat gctttagaaa atattactct
      421 atatcttgga aaagcttctt ttattaatga aaaaactttg ttaatacagg gcgaaaaaga
      481 agttcaaatt agtgccgata gaatttatat taatacaggc tcgattccta ttataccaga
      541 tataaaagga ctagatcaaa gtaaaaatgt attaacaagc aaagaattaa tggcacaaga
      601 aaatttacct aagcatcttg ttatcatagg tggaggttat attgctttag aatttgcttg
      661 tatttatgct aattttggtt ctaaggtaac cttattgcaa aggaacgata cttttttagg
      721 taaagaagat aaagatttcg cagatttaat ttttcaaaat ttagaaaata aacagattga
      781 tattagatta ggagttcaat ttaaagaaat taaagatttt gatcaaaaaa gtatagtgtt
      841 ttttactcaa gatcaccaag atttcgaaat tgaatgtgat atgatcttat tagcaacggg
      901 aagaaaggca aatactcttg gattaagttg cgataaagcc ggcattcaac tcgataaaag
      961 aggttttatt attgttgatg atactttaaa aacaaataaa gattctattt atgctctagg
     1021 tgatgtaaat ggaggtttac aatttactta tgtttcttta gatgattata gaatagctta
     1081 tgctccattt aggcaacaaa attatacaaa atctaaaaga aaggttattc cttatagtgt
     1141 ctttatcgat cctccttttt caagagttgg attaaatgaa aaagaatcaa ttgatgcagg
     1201 ttatagaatt aaagtggtaa aattgcctgt tgtagcaatc cctaaggcac aagttcttaa
     1261 aaaaacttat ggtttactaa aagcaatcat aaatgaagaa aatgacgaaa ttttaggagc
     1321 aatgcttttt tgtgaagaat ctcatgagat gattaatatt gttaaacttg ctatggatac
     1381 taatttaaaa tatcaagttt taagagatca aatttatact cacccaacaa tgagtgagtc
     1441 ttttaatgat ttatttgata tctaaataaa ttttttagat tttgcctaat accttcaagc
     1501 atagtgaaac gttttttata catggagcgt ttttgcgaag ggatttcttc taggtttttt
     1561 tgcgagtggt ggagcttgta gtatttgtgt ttatcgattt ttattaattc tccaccattt
     1621 tctagccaaa ttttttgata atctacaaaa tagccttttt cttttccttt ttgagaacgg
     1681 atttgatttt tttcatgtac acctaaagta gcttgaagtt ttaaaatttc acaaagcatc
     1741 ttagagcatt ctataagtaa agcaacaggg cgcaaaccat gacatttttt agttaaaatt
     1801 ttattaattt ctaaaatatt aaaatctttg tatttatatc cttgtatgca agaaagtaga
     1861 agattatttt ctaaagtaaa gcaaaaatta cattgtgaaa tagtgtattt tttaaatttt
     1921 aaagaaaaag cccaaaaacc ttcttcgtaa acattatggt tatatcctaa aaaaagctca
     1981 aaatcttcat caaaagaaaa aatcatttgt tcttcgggaa gaaatttaaa acaagtaagt
     2041 cccttatcaa catcataaat aagtgtttta acgcgttcat ttgctttaaa acttttatcg
     2101 caaaatcttc ttatagcatt gtagcaagca tagggtcttt gagagaaaaa gtcttttaaa
     2161 tgtttatttt tttcttcatt aagcgttttt tctagaagcc ttacttgagg aaaatataga
     2221 atttttcttg cttgaaaacg caaatagcgc caaaagatga tactttttct tctatcagta
     2281 aaatttggaa tagggtagga aaatttttta ttcacctgca atccttgata tatcattata
     2341 agttgcaaag agcattaagc ttaaaagtat tgccatgcct gcgtaactta agtattcaaa
     2401 agcacgctgt ggaatcttgc gtctaaaaat catttcataa agattaaaaa gtatatgtcc
     2461 tccatcaagc ataggaatag gtaaaagatt taaaatacct aaatttatag aaattaaagc
     2521 agtgataaat aaaagcaaag taaagctatt ttgtgcagcc tttgaggtaa tttcagtcat
     2581 ggtgataata ccgcctaaat tttttgcttc aacttcacca cttatgagtt ttacaatacc
     2641 cttgatgata agtgtggaag cttgaaaact ttcttgtgcg gcatatttaa aactttctaa
     2701 accttggtgt tttacaagag tgcttgtccc atttggactg attccaagtt gaggtttttc
     2761 aacgatttgt ccaaagtcat tatatccttg tcctattttt ggagttaaaa taaattctaa
     2821 attttttcct tctctatcga ttaatatttt caaaggctct aaacttaaat gctttgaaat
     2881 ttcatcaaag ctttgaattc ttataccgtt aatttctaag atagtatcat ttttttgaag
     2941 tcctatgtct tgtgcagcag agtttggcgc tatgcttcct atttgcggag caagtttgct
     3001 tagacctaaa tttcctatga taatataaag aaaaaaagct aaaatcaggt taaaaaatgg
     3061 tccagcaaaa agaatataaa tcttttttaa aggacttaaa atgctatagc tatctttgtc
     3121 tagattttca aaaccaggac gcatatcatc ttgtccttta agtttaacat atcctccaag
     3181 tggtaaagcg cttaagcgat agtttgtacc tttaaattca cgctctataa gactttttcc
     3241 aaatcctata ctaaagactt caacttttac acccaaagat cttgcagcta aaaaatgtcc
     3301 taattcgtga aagaaaatta aaaatgagat gactaaaaca gttgctaaaa attcaataga
     3361 ataaaattta attcccaaaa tcaaaataac aattaaaaac aataaagatc tcatttttct
     3421 cctttttttt gagcttttat ataagtatag atgtattcaa atccagaata aagagttaaa
     3481 atcaaagcta tgtaaagtag aatttctccg cctatccact ccatgattaa aaatcctatc
     3541 gcagtcattt gaaaagcggt tttaagtttg cctgcaaaag aagcattgac atttaaattt
     3601 tcactgatca ttacaactct aaaacccgtg ataaaaaatt cccttactaa gataatataa
     3661 attacccatt cattagcttt tcctgtaagt aaaagcccta aaaaagctgc taaaacaagc
     3721 attttatcgg ctaatggatc taagattcca cccagttttg tagtttgttt ccaagttctt
     3781 gcgatgtatc catcaaaaaa atcacttaaa gccgctaatg aaaaagttaa agcagcaaaa
     3841 tagttaatcc aactttgatg aatattttca aaatgatgaa ttaataaaaa aaatagcaaa
     3901 ggtgctaaaa ccattctaaa aatcgccaag atattgggta aattcataac aagccttgtg
     3961 aaattaaatg taaaattata atcaa
//
LOCUS       DARBAR010000126         3912 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.126, whole genome shotgun sequence.
ACCESSION   DARBAR010000126 DARBAR010000000
VERSION     DARBAR010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3912
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.126"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..430)
                     /locus_tag="SB815_001579"
     CDS             complement(<1..430)
                     /locus_tag="SB815_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEG0907293.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVDKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTC"
     gene            491..1798
                     /locus_tag="SB815_001580"
     CDS             491..1798
                     /locus_tag="SB815_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEG0907294.1"
                     /translation="MKYTELLQLQTFFSRFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVVKPNVILESLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFNPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVANFYF
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            1800..2138
                     /locus_tag="SB815_001581"
     CDS             1800..2138
                     /locus_tag="SB815_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907295.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            2147..2872
                     /locus_tag="SB815_001582"
     CDS             2147..2872
                     /locus_tag="SB815_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEG0907296.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILVLLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVALL"
     gene            2869..>3912
                     /locus_tag="SB815_001583"
     CDS             2869..>3912
                     /locus_tag="SB815_001583"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEG0907297.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIPISALACGDNIALLNEQIARF
                     KPKFVSIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     RYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDF"
BASE COUNT         1403 a          490 c          679 g         1340 t
ORIGIN      
        1 tacaagtttg agctaaagag ctgtgataaa agccacataa gggatgttta tgcaaagggg
       61 tttttgctat gattatttta tagttttgtt ctaaaaaagg aagcattttt aaaagttcat
      121 tttcacctac tttaggacta tctacactta aaacaaaaac aaattcattt ttaaaatttg
      181 aaagtataga gtaaagcgca agcataggag agtaaacttc aaattctaaa gaatctttta
      241 tcaagctaaa atggttttca aatttgtctt ctttcgcact cacatagaca tttttaaaaa
      301 ttttagaaaa tttatctact tgaaattgag ttaaattttg atttttaaga atcaatttgc
      361 ttttatcttg tcccatacgg ctagatttac caccacataa aatcacgcaa tttagctcat
      421 taagctgcac aaatttcctt tttaatgtaa ttctaccaca aattcgccaa aatattttat
      481 aatttctttt atgaaataca cagaactttt acaattacaa actttttttt ctcggtttaa
      541 aaaaattgat tttatcaagc gtatcaatga caatattttg gaattaagct ttgatagaga
      601 aagatttatt tttgatctta ctcgtgcaat gagtgcgatt tatacagcta aatttaatgc
      661 aaaaaattat aatgcacctt ttgattttat gcttaaaaag tattttagca atgcttttat
      721 aaaggaagtt aaagtccttg aaggcaatcg tattttatgt tttagtgtaa aagctaataa
      781 ggcttataaa agctatgaga gcaaaattta ttttgaattt acgggtaaaa ataccaatgt
      841 tattcttaca gatgaaaaag atttgatcat agaggcttta agacacattg ataaaagtta
      901 tcgtgttgta aaacctaatg tgattttaga gtctttaaag ccttataaaa tggatgaaaa
      961 ttttgaggaa attaaagact ttgcagatta tttttctcgc aaatttacaa gcatttatga
     1021 gagtaaaatc aaacaaataa aaaatttaaa acttgcacaa gtggataaaa aaatacaaaa
     1081 tttacaagaa cttttttcta gtttagatga agaaaattct ttactcttaa aagctttaga
     1141 atacagaaaa agggctgatg tattgtttgc aaatttgagt gttttaaaag attatgaaag
     1201 ggaatttaag cttgatgatt ttgaaggcaa agagcttgaa tttaagcttg aatttaatcc
     1261 taagcaaagc gctaatttat attataaaaa tgctaaaaaa ttagaacaaa aagctaaaaa
     1321 tttaaacata caaagacaaa atttaaaaga aaagttagat tttaccttga gtttgaaaga
     1381 attattgctt caagctaaga gtgagataga gcttgaaatt ttactaccta aaaaaaatag
     1441 caaaaaaaat caagatcata aacaagaaga tcttgtcgca aatttttatt ttaacgagtt
     1501 taaaatttgc gtgggtaaaa atgaaaaagg caatgaattt ttacttaaaa atgctaaaaa
     1561 agatgatttg tggcttcatg taagggatat tcctagcgca catactttga ttgtatcaaa
     1621 caagcaaaaa atcagcctcg atgtgataga atttgctgca aggctttgtg taagcttttc
     1681 taagttaaag aaaggttcgt attgggtcga ttatacttta aaaaattttg ttaaggttca
     1741 gcaaaaggcg tttgtaaatt atacaaattt taaaagtatt aatatcacaa aggattaaaa
     1801 tgccagttag ccctttagga aatatcaatt atataaatca gaatatggct tatccagcta
     1861 cacaagcaag caatgagctt gcaaaagaag gttttgcagc tacgctaaat atggctgaat
     1921 ttaatgaaaa agaaaaaact ttaaacaagc ttgagaaagt caatgagact catgaaatca
     1981 aagaagagat caaagaaaaa gccgaacaag aagaaaaaaa gaaaaaacac aatcaagaag
     2041 ctaaaaccag tgatgatgag aaaaatgaag aagatgagtc taaagatcca aattttaaag
     2101 acgcacaaag cattcatcgc ttagatatta gtatataagg aaaaatatgt ttaatacaac
     2161 tagaattatt tcagctcttg tgatgatagg ggctattatt attatcgcgt tgattgatca
     2221 attttttatc aattttatcg tttttgcggt tttattgtat ctatctttta gtgaagcaaa
     2281 aaaacttttt gctttagaaa atatctctat tatccctttg gctatagctt ttattttggg
     2341 aagtttatcg cataaagctt tgctttttgg gattttagtt ttgttattag tcgttggata
     2401 tttggtttat aaaaaggctt ccttaaaacc agctcttatt tatatttatc ctagtttgcc
     2461 tattttagca ctttggcaag tgtatttaga tcagggtatg tttgcacttt tttggcttat
     2521 cattatcgtt gcagcttgtg atagtggggc gtattttatc ggaaaactta tgggtaaaac
     2581 tcctttttct ccaacaagtc caaacaaaac cttagaaggt gttataggtg gcttgatttg
     2641 tgcgagtgtt attggaacta ttttgggagt ttttgtttat agtttttggc tttctttgct
     2701 ttgttcgttt tttgtagcga tttttgcagt gattggagat ttgcttgaga gttattttaa
     2761 aagagaagca ggtgtaaaag atagtggaga tcttatccct ggtcatgggg gcgtgcttga
     2821 taggatcgat gcggtgatca ttgctgcttt tgtgatggtt gctcttttat gatacttttt
     2881 ggaagtacgg gcagtatagg agtaaatgct cttaaacttg ctgctttaaa aaacattccc
     2941 atttctgctt tagcttgtgg ggataacatc gctcttttaa atgagcaaat cgcaaggttt
     3001 aaacccaaat ttgtttccat aaaagattca aaaaataagc atttagttaa acacgataga
     3061 gtttttatag ggcaagaagg tttagagcaa attttaacag aatgccaaga taagctttta
     3121 ctcaatgcca ttgtaggttt tgcaggactt aaaagcactt taaaggctaa agagcttggc
     3181 aaaaacatag ctttagctaa caaagaaagt cttgtagtag ctgggagttt tttgaaaggg
     3241 gctaaatttt tacccgttga tagtgagcat gcagctttaa aatttttact cgaaggtaaa
     3301 aaaaatatag caaaacttta tatcacagca agtggtggag ctttttatag gtataaaatc
     3361 aaagatttaa atcaagtcag tgtcaaagat gctttaaaac atcctaattg gaacatggga
     3421 gcaaagatca ctatagatag tgcgactatg gcaaataagc tttttgagat tatagaggct
     3481 tatcatttat atgattttaa agaaattgat gctttaatag aaccaagatc tttagtgcat
     3541 gcaatgtgtg aatttaaaaa tggagctagc acggcgtatt tttcaaaagc agatatgaaa
     3601 ctagctattt cagatgctat atttgaaaaa caagatacgc ctattttaga ggctgttgat
     3661 tttagcaaaa tgcctgcttt aaaatttcat ccaatcagca caaaaaaata tcctattttt
     3721 aagcttaaaa atacattttt aaaagagcca aatttaggtg ttatcatcaa tgctgctaat
     3781 gaagttggtg tttataattt tttagaaaat aaaagtggat ttttagacat tgctaaatgc
     3841 atttttaaag cccttgatca ttttggagta cctaaaattt caagcataga agaagttttt
     3901 gagtatgatt tt
//
LOCUS       DARBAR010000127         3897 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.127, whole genome shotgun sequence.
ACCESSION   DARBAR010000127 DARBAR010000000
VERSION     DARBAR010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3897
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.127"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..1106
                     /locus_tag="SB815_001584"
     CDS             <1..1106
                     /locus_tag="SB815_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG0907298.1"
                     /translation="WFFSHGAGAFTLGQFFYHLFKINILDYFCGGDGDIRYYKFYNKL
                     LELKDKRNIITINDIDPSWYGNQHKRDKLFSSFQKITPILFQIRDPIELIKHAYGRKW
                     GNNLAKTKEFDLSYQFNDIITEVEVYNYNLPNTLEGQRPQSFLWKSLIECFDKFNDCF
                     YLDISKIRGEETIHTLNYLSNKFNLKQIKINDKEFVTKSYFKGNLYFLLPLTLYLNKE
                     DLNTNIPNKKINKNNSLIININFFQNDNNLFNLYSELSILDMDSSVGFYIDKQDYNKL
                     KNDSIFYKQVIDYLRNFAYELKNRIQIEEDLMLKVEDVLRHLYNNKNARVSAKNILDE
                     ELVYIKQHRPDIVASWKYYQEFEKMCKELDGDI"
     gene            1173..1946
                     /locus_tag="SB815_001585"
     CDS             1173..1946
                     /locus_tag="SB815_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG0907299.1"
                     /translation="MKQGDFTKVAKHYHNRPAYSPFLLEKLVACINDKNKNLKDLNIV
                     EVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSNISWHKGSGEETCMSN
                     NQADWVIMASSFHWTDPKKSLPEFNRILTGGGYFTAIWNPRHIVEGSVFDEIEKEIKH
                     IVPDLARVSSGTQNVKKWEEILVSTGDFIDCFFMECDYKEFWDKERYLGAWHSVNDIQ
                     AQAGEKRWKEILEMIEAKISHMQSIEIPYKIRAWTARKA"
     gene            1999..2760
                     /locus_tag="SB815_001586"
     CDS             1999..2760
                     /locus_tag="SB815_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG0907300.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKDQKIDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLETD
                     EGNELFNKISNKISQRLPKEFSIKYTTRCWSAKKI"
     gene            2775..>3897
                     /locus_tag="SB815_001587"
     CDS             2775..>3897
                     /locus_tag="SB815_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907301.1"
                     /translation="MAELKFKTKAQNLKNLQTKLKKAKVLPLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLKALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSKSAKTYYH
                     YRDYLEFKDIRLQKIIELIKELEVLYDCCFLDVEFAFAIQDDEEELFCLQVRPLVMHE
                     KNNLFHSLPREALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVNFYLDKLNKNHELHDKIEFNIVYSCYDFNSSKKLEE"
BASE COUNT         1485 a          425 c          697 g         1290 t
ORIGIN      
        1 tgtggttttt tagccatggt gctggcgcgt ttactttagg tcaatttttt tatcatttgt
       61 ttaaaattaa tatattggat tatttttgtg gaggagacgg ggatatccgt tattataaat
      121 tttataataa attgttagaa ttaaaagata aaagaaatat tattactata aatgatatag
      181 acccatcatg gtatggcaat cagcataaaa gagataaatt attttcatct tttcaaaaaa
      241 taactcctat tctatttcag ataagggatc ctatagaatt gattaaacat gcttatggta
      301 gaaaatgggg aaataattta gccaaaacaa aagaatttga tttgagttat caatttaatg
      361 atatcataac ggaagtagaa gtatataatt ataatttgcc taatactttg gaaggacaaa
      421 ggccgcaatc gtttttatgg aaatctttaa tcgaatgttt tgataaattt aatgattgtt
      481 tttatttaga tatctcaaag ataagaggtg aagaaactat tcacacatta aattatctat
      541 caaataaatt taatttgaaa caaattaaga ttaacgataa agagtttgta acaaaaagtt
      601 actttaaagg aaatttatat tttctattgc ctttgacttt gtatttaaat aaagaagact
      661 taaatacaaa tattccgaat aaaaagatta ataaaaacaa tagtttgata attaatatta
      721 atttttttca aaatgataat aacttattta atttatattc tgagcttagt attttagata
      781 tggatagttc agtgggtttt tatattgata agcaagatta taataaatta aaaaatgata
      841 gtatttttta taagcaagta atagattatc ttcggaattt tgcttatgaa ttaaaaaata
      901 gaattcaaat agaagaagat ttgatgctta aagttgaaga tgttttgaga catttatata
      961 ataataaaaa tgctagagta agtgctaaaa atatcttgga tgaagaattg gtttatatta
     1021 aacaacatcg tccagatata gtagcttctt ggaaatatta ccaagaattt gaaaaaatgt
     1081 gcaaggagtt ggatggtgat atttaggaga aagatttgta aattaataaa aaaaagatat
     1141 aattatgttt taatttagaa aaaggaatga atatgaaaca aggggatttt acaaaagttg
     1201 caaaacatta tcacaataga cctgcttata gtccgttttt acttgaaaaa cttgtagctt
     1261 gtatcaatga taaaaataaa aatttaaaag atttaaatat tgttgaagta ggagctggaa
     1321 ctggaaaact tactaagatg ttgggagaaa tgtttggatg ccaaattagt gctgtggaac
     1381 caaacgataa tatgcgtgaa gaagggcaaa aatttacaca aaatttatca aatatttctt
     1441 ggcataaagg gagtggcgaa gaaacctgca tgagcaataa tcaagctgat tgggtcatca
     1501 tggctagttc tttccattgg acagatccta aaaaatctct cccagaattt aatcgtatat
     1561 tgacaggggg ggggtatttt actgcgattt ggaatcctcg ccacattgta gagggttcgg
     1621 tttttgatga aattgaaaag gagattaaac atattgttcc agatcttgct cgtgtaagca
     1681 gtggcactca aaatgttaaa aaatgggaag aaattcttgt ttcaacagga gatttcatag
     1741 actgcttttt tatggagtgt gactataaag agttttggga taaagagcgt tatcttggag
     1801 cttggcattc tgtaaatgat atacaagcac aagcaggtga aaaaagatgg aaggaaattt
     1861 tagagatgat agaagctaaa atttctcata tgcaaagtat agagattcct tataaaataa
     1921 gagcatggac agctagaaaa gcataaaata cctccttttt ttcatcaagc ttgtcaaaga
     1981 tgaaaaaaag gaaataaaat gcaaaaacta gtagaacaag tgtgggatta taccaagcat
     2041 gctaaatttt atagctatag accaaattat gctccaaaaa ctatagatat gcttattagc
     2101 ttagttggaa aaaaagatat taaagtcgct gatatcggtg caggaactgg aaatttaagc
     2161 attatgcttt tagaaagagg atgtaaggta gtatctgtag aaccaaatga tgcgatgcgt
     2221 gagatcggga tagaaagaac caaggatcaa aagattgact gggttagagc aacaggctta
     2281 aactcaacac tccaaaatag tgaatttgat tgggtgactt ttggtagtag ttttaatgta
     2341 atggatagaa atgaagcctt agaggaagcg catcgcttat taaaatcaga gggatatttt
     2401 tcttgtatgt ggaatcacag ggatttaaac gatcctgtgc aaaaaatagc tgaagatact
     2461 attgtagaat ttgtaccaaa ttatacaagg ggaacaagaa gagaagatca aagaccaatt
     2521 atagagagtc gaaaggatct ttttgataat attgtttata ttgaagagga tttttatttt
     2581 catcaaagca ttgaaaatta tattaatgca tggaagagtg ttaaaaatcc ttactgggat
     2641 ttggagactg atgaaggaaa tgaacttttt aataaaatta gtaataaaat ttcacaaaga
     2701 cttcctaagg aatttagcat aaaatatacc actcgttgtt ggagtgctaa aaaaatataa
     2761 aactaaggaa aaacatggcg gagttaaaat ttaaaaccaa agcacaaaat ttaaaaaatt
     2821 tacaaacaaa attaaaaaaa gcaaaagttc tacctttggt tttaacttcg cttgaagaat
     2881 taatatcaaa tgaagataaa gttttacagg acattcaaac cttaaaggct aatagactca
     2941 ttataagaag ttcttcttta agtgaagata gcatgaaaaa ctccaatgca ggtgcttttc
     3001 tttctttggc aaatattaaa gctgattcta aagatgagtt attaaaagct ttatatgaag
     3061 ttgccaattc tatgccatca aaaagtgatg aaattttagt tcaacctatg cttgaaaaca
     3121 ttactctttg tggagttggt tttagtgttg ataaggataa tttttcccct tatttttgtc
     3181 ttcaatatga tgaaaatggt tcaaatagct ctattacaga tggaagtagt aagagtgcaa
     3241 aaacttacta tcattacaga gattatttag aatttaaaga tattagactt caaaaaatta
     3301 tagaacttat aaaagaatta gaagttttat atgactgttg ttttttagat gttgaatttg
     3361 catttgctat tcaagatgat gaggaagaac ttttttgctt acaagtgcgt cctttggtta
     3421 tgcatgaaaa aaataattta tttcattctt taccgagaga agctttatat agattttata
     3481 aacgttttga gtctttaaaa gaatcaagat ctagagtttt gggagataaa gccatttttg
     3541 gggtaatgcc tgattggaat ccagctgaaa tcataggatt aagacctaag cgtttagctt
     3601 ttagtttata taaagaaatc attacggata atatctgggc gtatcaaaga gataattatg
     3661 gttatagaga tttaagatcc catcctttaa tccattcttt tttaggcatt ccttatgtgg
     3721 atgtaagatt atcttttaat tcttttatac caaaaaaatt agatgaaaat atcgcacaaa
     3781 aacttgtcaa tttttactta gataagctta ataaaaatca tgaattgcat gataagattg
     3841 aatttaatat tgtttattct tgttatgact ttaatagttc taaaaaatta gaagaac
//
LOCUS       DARBAR010000128         3812 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.128, whole genome shotgun sequence.
ACCESSION   DARBAR010000128 DARBAR010000000
VERSION     DARBAR010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3812
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.128"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..1056)
                     /gene="neuC"
                     /locus_tag="SB815_001588"
     CDS             complement(<1..1056)
                     /gene="neuC"
                     /locus_tag="SB815_001588"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEG0907302.1"
                     /translation="MKKIVFVSGTRADFSKIKSLMMKVENSNEFELFIFVTGMHMSKK
                     FGSTYMEIEKCGFKNIYKYINHDKYYQMDKALSSTIDGFSKFIHEIEPDLIVVHGDRV
                     EPLAAAIVGSLNNILVAHIEGGELSGTIDESLRHAISKLAHIHLVNDEIAKKRLMQMG
                     EDEKSIFIIGSPDLELLNNTISLDEAKKYYDIKFKNYAIAIFHPITTEINSLYKQSEE
                     FVNALIKSEKNYIVIYPNNDLGFELILQNYERLKNNERFKIFPSLRFEYFISLLKNAN
                     FIIGNSSCIIKEALYLNINGILVGSRQDGRTDINKTIRVNAEEKDILEAILNTSKCTN
                     ITNKRLEILNSSEQFYRL"
     gene            complement(1053..2084)
                     /gene="neuB1"
                     /locus_tag="SB815_001589"
     CDS             complement(1053..2084)
                     /gene="neuB1"
                     /locus_tag="SB815_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sialic acid synthase"
                     /protein_id="HEG0907303.1"
                     /translation="MQIKIDKLTISQKNPLIIPEIGINHNGSLEIAKLMVDAAKRAGA
                     KIIKHQTHIVEDEMSQEAKNVIPGNANISIYEIMEQCALNYKDELALKEYVEKQGLVY
                     LSTPFSRAAANRLEDMGVSAYKIGSGECNNYPLIKHIAQFKKPMIISTGMNSIESIKP
                     TVKILRDYEIPFVLLHTTNLYPTPSHLVRLQAMLELYKEFNCLYGLSDHTTNNLACIG
                     AIALGASVLERHFTDTMDRKGPDIVCSMDESTLKDLINQTQEMVLLRGDNNKNPLKEE
                     QVTIDFAFASVVSIKDIKKGEILSMDNIWVKRPSKGGISAKDFEAILGKRAKKDIKNN
                     IQLTWDDFE"
     gene            complement(2065..2949)
                     /locus_tag="SB815_001590"
     CDS             complement(2065..2949)
                     /locus_tag="SB815_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,3 sialyltransferase"
                     /protein_id="HEG0907304.1"
                     /translation="MSMNINALVCGNGPSLKNIDYKRLPKQFDVFRCNQFYFEDRYFV
                     GKDVKYVFFNPFVFFEQYYTSKKLIQNEEYNIENIVCSTINLEYIDGFQFVDNFELYF
                     SDAFLGHEIIKKLKDFFAYIKYNEIYNRQRITSGVYMCATAVALGYKSIYISGIDFYQ
                     DTNNLYAFDNNKKNLLNKCTGFKNQKFKFINHSMACDLQALDYLMKRYDVNIYSLNSD
                     EYFKLAPDIGSDFVLSKKPKKYINDILIPDKYAQERYYGKKSRLKENLHYKLIKDLIR
                     LPSDIKHYLKEKYANKNR"
     gene            3003..3812
                     /gene="wlaN"
                     /locus_tag="SB815_001591"
                     /pseudo
     CDS             3003..3812
                     /gene="wlaN"
                     /locus_tag="SB815_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344532.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,3 galactosyltransferase"
BASE COUNT         1338 a          580 c          410 g         1484 t
ORIGIN      
        1 taacctataa aattgctcag aactatttaa aatttctagt cttttatttg taatattagt
       61 gcatttacta gtatttaaaa tcgcttccaa tatatccttt tcctctgcat ttactcttat
      121 tgttttatta atgtcagttc taccatcttg tcttgaacca actaaaattc catttatatt
      181 aagatataaa gcttctttta ttatacaact tgaatttcct atgataaaat tggcattttt
      241 tagcaaactt ataaaatact caaatcttaa agaaggaaaa attttaaatc tttcattatt
      301 ttttagcctt tcataatttt gcaaaattaa ttcaaatcct aaatcattat ttggataaat
      361 aactatataa tttttttcac tttttataag agcatttaca aattcttcac tttgtttata
      421 taaagagttt atttcggttg taattggatg aaatatagct atggcataat ttttaaattt
      481 tatatcataa tatttttttg cttcatctaa agatatagta ttatttagca attctaaatc
      541 aggagaacct ataataaaaa tagatttctc atcttcaccc atttgcatta atcttttttt
      601 tgctatttca tcatttacta aatgaatatg tgctaattta ctaatagcat gtcttaaact
      661 ctcatctata gttcctgaaa gctctccgcc ttctatatgt gccactaaga tattatttaa
      721 acttcctact atagcagcag ctaaaggctc cactctatca ccatgcacta ctattaaatc
      781 aggctctatc tcatgtataa atttagaaaa accatctatt gttgatgata aagccttatc
      841 catctgataa tacttatcgt gatttatata tttatatata tttttaaaac cacatttttc
      901 tatttccata taagtagaac caaacttttt actcatatgc ataccggtta caaatataaa
      961 taattcaaat tcatttgaat tttcaacttt catcattaga gattttattt tagaaaaatc
     1021 agctctagtt ccgctaacaa aaactatttt tttcattcaa aatcatccca tgttagttgt
     1081 atattatttt ttatatcttt ttttgctctt tttccaagta tggcttcaaa atcctttgca
     1141 cttataccac cttttgaagg tctttttacc caaatattat ccatagataa aatttcaccc
     1201 ttttttatat ctttaatact tactacacta gcaaatgcaa aatcaatggt cacttgctct
     1261 tcttttaaag gatttttatt attatcgcct cttaaaagca ccatttcttg tgtttgattt
     1321 ataagatctt ttaaagtgct ttcatccata gagcaaacta tatcagggcc ttttctgtcc
     1381 atggtatctg taaagtgtct ttctagtaca cttgctccaa gagctattgc acctatacat
     1441 gcaagattgt ttgtggtatg atcactaagt ccataaagac aattaaactc tttatataat
     1501 tctaacatag cttgtaatct tactaagtgc gatggagtag gatataaatt tgtagtatga
     1561 agcaaaacaa aaggtatttc ataatctcta agtatcttaa ctgtgggttt tatactttct
     1621 atgctattca ttccggtgct tataatcata ggttttttaa attgtgctat atgttttatt
     1681 aaaggataat tattacattc acctgagcct attttataag cacttacacc catatcttct
     1741 aaacgatttg ctgcagctct actaaatgga gtgctaagat ataccaaacc ttgcttctct
     1801 acatactctt ttaaagctag ttcatcttta tagtttaatg cacattgttc cataatctca
     1861 taaatgctaa tatttgcatt acccggtata acatttttag cctcttggct catttcatct
     1921 tcgactatat gagtttggtg ttttattatc ttagctcctg ctcttttggc cgcatctacc
     1981 ataagttttg ctatttctaa actaccattg tgatttatac ctatttcagg gattatcaaa
     2041 ggatttttct gagaaatagt taatttatct atttttattt gcatattttt cctttaagta
     2101 gtgttttatg tcacttggaa gtctaattag atcttttatt agcttataat ggagattttc
     2161 ttttaaccta cttttttttc cataatatct ttcttgtgca tacttatctg gtatcaatat
     2221 atcatttata tatttttttg gttttttact caatacaaaa tcacttccaa tatccggagc
     2281 caatttaaaa tactcatctg aatttaaact ataaatattc acatcatacc ttttcattag
     2341 ataatctaaa gcttgtaaat cacatgccat tgaatgattg ataaatttga atttttgatt
     2401 tttaaaacca gtgcatttat ttaataaatt ttttttatta ttatcgaagg catataaatt
     2461 atttgtatct tgataaaaat caataccact tatatatata cttttatatc ccagagccac
     2521 agctgtagca cacatataaa ctccactagt aattctttgc ctattgtata tttcattata
     2581 tttaatatag gcaaaaaaat ctttaagctt ttttataatc tcatgaccta aaaaagcatc
     2641 actaaagtat aattcaaaat tatcaacaaa ttgaaatcca tctatgtatt ctaaattaat
     2701 agtagaacaa actatatttt ctatgttata ttcttcgttt tgtataagtt ttttactagt
     2761 atagtattgt tcaaaaaaca caaaaggatt aaaaaaaaca tattttacat ctttacccac
     2821 aaaatatcta tcttcaaaat aaaactgatt gcatctaaat acatcaaatt gttttggtaa
     2881 ccttttataa tctatatttt ttaaactagg tccattaccg cataccaaag cattaatatt
     2941 catactcatt ttattacctt aaatttatag tataattata tcaaaaaaaa taaagagcta
     3001 aaatgagtca aatttccatc atactaccaa cttataatgt ggaaaaatat attgctagag
     3061 cattagaaag ttgcattaac caaactttta aagatataga aatcattgta gtagatgatt
     3121 gtggtaatga taaaagtata gatatagcta aagagtatgc tagtaaagat gatagaataa
     3181 aaatcataca taatgaagag aatttaaagc ttttaagagc aagatatgaa ggtgctaaag
     3241 tagcaacttc accttatatc atgtttttag attctgatga ttatttagaa cttaatgctt
     3301 gcgaagaatg tattaaaatt ttggatatgg gtgggggggg gtaaaattga tttgttgtgt
     3361 tttgaagctt ttattaccaa tgcaaaaaaa tcaataaaaa aattaaatat aaaacaagga
     3421 aaatacaaca acaaagaatt tacaatgcaa atacttaaaa ctaaaaatcc attttggaca
     3481 atgtgggcta aaataatcaa aaaagatatt tatttaaaag ccttcaacat gttaaatctc
     3541 aaaaaagaaa tcaaaataaa tatggcagaa gatgccttat tatattatcc tttgacaata
     3601 ttatctaatg aaatatttta cttaacacaa cctttgtata cccagcatgt aaatagcaat
     3661 tctataacaa ataatattaa ttctttagaa gctaatattc aagaacataa aattgtttta
     3721 aatgttttaa aatcaattaa aaataaaaaa acacctctat attttctaat tatatattta
     3781 ttaaaaattc aattattgaa atatgaacaa aa
//
LOCUS       DARBAR010000129         3693 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.129, whole genome shotgun sequence.
ACCESSION   DARBAR010000129 DARBAR010000000
VERSION     DARBAR010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3693
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.129"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..1087
                     /locus_tag="SB815_001592"
     CDS             <1..1087
                     /locus_tag="SB815_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907305.1"
                     /translation="LQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYD
                     ENDLEEQARKYGISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQG
                     FIQNLTQKPFVIGEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLN
                     KSNEKNMDFINTLKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAW
                     SVLKELDKMDENFNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCS
                     EFDELWMIDEKSYLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLD
                     KQSKPSINILDELIKQIAAVNEQHNES"
     gene            1053..2237
                     /locus_tag="SB815_001593"
     CDS             1053..2237
                     /locus_tag="SB815_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEG0907306.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSIFERRMSI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCKKFVLPYFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGMQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
     gene            2224..3126
                     /locus_tag="SB815_001594"
     CDS             2224..3126
                     /locus_tag="SB815_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG0907307.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYIIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEAENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            3063..3458
                     /locus_tag="SB815_001595"
     CDS             3063..3458
                     /locus_tag="SB815_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HEG0907308.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            3458..>3693
                     /locus_tag="SB815_001596"
     CDS             3458..>3693
                     /locus_tag="SB815_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEG0907309.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKK"
BASE COUNT         1407 a          399 c          657 g         1230 t
ORIGIN      
        1 tttgcaaata agtaaggata aaaagataag agatttggct aaggtgactt cgattagaat
       61 ttctaaaact atggatagtg aaagtattta cttgcttact aaaaaatgga aagagcttga
      121 aagaaattat gatgaaaatg acttagaaga acaagctcgt aaatatggca ttagtaaata
      181 tgatgattat gatagcgtga ttaaaaaact cttagtcaag cttgaagagc gtagttatga
      241 gcactttagt gaattattat gcttgggttt aaatccttca ttggtagaag atttaaaaat
      301 tcaaggtttt atacaaaatt taacacaaaa gccttttgta ataggcgaag aaaattttaa
      361 aaatgaacta atggaattta taaatcatcg cataatggtt gataatatgt atgtccaaaa
      421 aaatttaaat ttttttaacg ataatctaaa aaaaatctat gaattgcttg tcttacttaa
      481 taaatcgaat gaaaaaaata tggattttat caatacctta aaaccagatg aaaatgggga
      541 agtaaaactt agttttgagg atttaaaact aaaatttaaa caacttggag aaaaaattac
      601 atctttaaat aatcaaattg aattcacgca aagcttagaa gagagagagg cttggagtgt
      661 tcttaaagag cttgataaaa tggatgaaaa ttttaataag tataaagtta attattcttt
      721 agctttattt tctatagtaa attaccgttt cattatggaa aaatatggta tgggaagttt
      781 gaatgaaatt tttgttcgat ttaaaaaaat tttaaaagat tcttgtagtg aatttgatga
      841 actgtggatg atagatgaaa agagttattt gattgtttcg ccaggaaaaa gcaaagatga
      901 aattacacag cttgtaaata caaatcttaa aactatagaa aattttagat ttatttataa
      961 gcaagatatt ataactccta aaattcacgt ggcttatctt gataagcaaa gtaagccaag
     1021 tattaatatt ttagatgagt taataaagca aattgcagcg gttaatgaac aacataatga
     1081 aagttgagaa ttttttagct caaaaaagta taaattacga taaaattgat cgttttttga
     1141 tgtttagaat gtatgaaaaa tataagaaat attttaaaaa tattcctata atccaactta
     1201 taggcacaaa tggtaaaggt agcacgggta gatatttaac ccaactttta gaaaatttaa
     1261 attataaaat agggcattat actagcccgc acattttcag ttttaatgaa agattttatc
     1321 ttgatggtaa gattgcgaat gatgaagaat tagaacaagc tcatataaga cttgaagaaa
     1381 tttttaaaca agacttgcaa aaattaagtt atttcgaata tgctactttt ttagctatga
     1441 ttttatttca aaaatgcgat ttcattgttt tagaagcagg agtgggtgga gaatatgatg
     1501 ctacttctat ttttgaaaga agaatgagta tttttacaag aattggattt gaccatattc
     1561 aaattttggg caattcttta gaagatattg caagaaccaa gcttaaagtt atggcaccta
     1621 tagcacttat aagtgatgag caagagcaaa atgttttaaa tttagcaaaa aaaattgctt
     1681 ttttaaaaaa agctaatttg caagtttcct ccttaaatcc ttttttgaaa gaaaaatttg
     1741 agatttattg taaaaagttt gttttacctt attttttaaa gcataattta aagcttgcat
     1801 taaaggcttg tgaaatttta acttcgcaag aaaaaacctt agaagcttta aaaaagttac
     1861 aagagttaaa tttacaagga agatgccaag aaatttctcc aaattttttt gttgatgtgg
     1921 gtcataatcc catggctgct aaggccatgc ttgataaatt tcaaggagaa aaaataaatc
     1981 ttatttataa tgcttatttg gataaggata tttttcaaat tttaaataca ttaaagccta
     2041 ttattgatac aatacaaata tataaatata aaagtgcaga acgaaagctg gccgatgatg
     2101 aaatttatag tattgcatca aagctaggca tgcaatgtaa agaatttgta aaattagaag
     2161 agaataaaaa aaatctagtt tttggttctt ttatgctggt agaaaatttt ttaaaggagt
     2221 ggtgtggtaa aaaataaatt cactattacc attacagata ttaacggttc aagacatttt
     2281 tatttaaatc aaataatcaa aaaaatagtt ttttatatta ttgcttttat tgttttattt
     2341 ttagttttta gtggttttta tatcaaatat ctcgatagca aacttagtga tatcagtgaa
     2401 aagcgtgagg agcttttgaa aaaaagcaaa gaattggaat tatctaattc gcaaatgcaa
     2461 aaaagcatag aagaaaaaac tcagcagtat gcagctatag aagataaaat agcttctttt
     2521 gaagaggctt tgggcttaga agcagaaaat aatcttacaa ttagtgcaag acttgataat
     2581 cttcagctta ccaatgagca gcaacttgga attttggggc aaattcctaa tggatggcct
     2641 attgaaaata aaggcattac aggaaatttt ggctggagag agcatccgct tttaaaaaga
     2701 agggaatttc atcctggtat tgatttaaga gcagaaattg gtactcctat ttatgcacca
     2761 gcaagtggag tagtggaatt ttcaggttat agtgataatg gctatggcta taatgtaatt
     2821 ttattgcata attttggttt taaaacagta tttgctcata tgatgcgcaa agaagtggtc
     2881 aaagcaggtc aatttgttaa taaagggcag ttgataggtt atagtggcaa tacaggtctt
     2941 tctacggggc cgcatttgca ctatgaggta aggtttatta ataaaacttt agaacctttg
     3001 tattttttaa atttgcaaag aaaaaatatg aatgattttt ttaatcaaga aaggagagtt
     3061 ccatggcaat ctttaataaa ggcggtatca gcccaacatc cagctctagc tcagaaacaa
     3121 cagtaatttc ttcaggtgcg agaattgagg gtaaatttta ttttgcttct atgcttcatg
     3181 ttgatggaga gttaagtggt attattcatt ctgaaagcat tgtggttatc ggaaaaaatg
     3241 gaaatttaaa aggtgaatta caagcagata aaattgtagt aaatgggtgt tttgaagggc
     3301 aacttgaggc taatagttta gaaattttag cgggcggagt tgttaatggt gatatttcaa
     3361 cgcaaaaaat ttctatagaa aatggcggtc gctttaatgg aactagtaaa attaaagaag
     3421 atactatcaa acttattgaa aataacaacg aagaataatg caagcttcat tttatgaata
     3481 cttacaaaat ccaaaaattt gtgaactttt tctttgtaaa gatgaaaaac aagcagattt
     3541 actcgctcaa gtttcacgat ttaagggttt aaaaaccttt gttttacctg attttagagc
     3601 gcagtttgga gatgatttaa gggctttttc taaagaactt tttgatcttt gtaagatttt
     3661 aaatgcttat cataaagaag aagaaaaaaa aat
//
LOCUS       DARBAR010000130         3682 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.130, whole genome shotgun sequence.
ACCESSION   DARBAR010000130 DARBAR010000000
VERSION     DARBAR010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3682
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.130"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..559
                     /locus_tag="SB815_001597"
     CDS             <1..559
                     /locus_tag="SB815_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HEG0907310.1"
                     /translation="KIYTKPKEKLIIFASTHKDEEELLLDHFKLEENEKLIIAPRHPE
                     RFKEVENLLLNKGLEFEKFSSLKDENKKFSKKILLLDALGELVNFYAISDVVVLGGSF
                     IEGIGGHNPIEAAYFDNVLISGKFIHNQKVLFEEVENVYFCEKLKDLNDKVHYLNLKA
                     KISKKENLDLIIQTIQKGIDARKSL"
     gene            540..1292
                     /locus_tag="SB815_001598"
     CDS             540..1292
                     /locus_tag="SB815_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG0907311.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSYGKKVVVARALMS
                     DKARFNVIKAKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKVKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFNYHFRANLDSGFAKFGFDIKNLDF"
     gene            1360..2697
                     /gene="ffh"
                     /locus_tag="SB815_001599"
     CDS             1360..2697
                     /gene="ffh"
                     /locus_tag="SB815_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEG0907312.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDAKQNGIGQKQFLNAIKINLENILSVNGKNQGFVFASKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMDELRAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            2762..2989
                     /gene="rpsP"
                     /locus_tag="SB815_001600"
     CDS             2762..2989
                     /gene="rpsP"
                     /locus_tag="SB815_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEG0907313.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            2992..3234
                     /locus_tag="SB815_001601"
     CDS             2992..3234
                     /locus_tag="SB815_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEG0907314.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            3227..>3682
                     /gene="rimM"
                     /locus_tag="SB815_001602"
     CDS             3227..>3682
                     /gene="rimM"
                     /locus_tag="SB815_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HEG0907315.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNANNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYL"
BASE COUNT         1385 a          392 c          714 g         1191 t
ORIGIN      
        1 taaaatttat accaaaccta aggaaaaact tatcattttt gccagtacgc ataaagatga
       61 agaagagctt ttgcttgatc attttaaact agaagaaaat gaaaaactca ttatcgcccc
      121 acgacaccct gaacgtttta aagaagttga aaatttgctt ttaaacaaag gtttagaatt
      181 tgaaaaattt agttctttaa aagatgaaaa taagaaattt tctaaaaaaa ttttgctttt
      241 agatgcttta ggggagcttg taaattttta tgcaatttct gatgttgttg tgcttggagg
      301 ttctttcata gaaggcatag gaggacacaa tcctatagaa gcggcatatt ttgacaatgt
      361 attaatcagt gggaaattta ttcacaatca aaaggttttg tttgaagaag tggaaaatgt
      421 atatttttgt gaaaaattaa aggatttaaa tgataaagtt cattatttaa atttaaaagc
      481 taaaatttcc aaaaaagaaa atttagatct tatcatacaa actatacaaa agggaattga
      541 tgcaagaaaa agcttataaa ctcttagctt tgcaagaaaa aatttcaaat cgtgaagcta
      601 aagatttgat tgataagggt tgtgtttttt catatggaaa aaaagttgtg gttgctagag
      661 ctttgatgag cgataaggca agatttaatg tgataaaagc taaaaatcct caaattattt
      721 ttgaagatga taagattatt gctattaata aaccttatgc ttatgtgagt gaagatttag
      781 agaaaaaatt taatgccaag cttttaaatc gtttagacaa agaaacaagt ggtgtgattt
      841 tgctttgtaa agatgaagat tttagaaagc tttgtataga agaatttaaa aaacacaggg
      901 tttataaaag ttatattgcg gttttagatg gggttttggc tgaagaggtt gaagtgaatg
      961 aacctatttt tactataaaa gtaaaaggcg gggcgttaag taaagtttca aaagatggtt
     1021 taagtgcctt aagtatcatt actcctatca tgatgcagtc aaaaaaaacc ttagcaaaaa
     1081 tagttattca aacaggtaga actcatcaaa tcagagtgca tgctaaattt ataaaacatg
     1141 gcgttgtagg tgatgaaaaa tatgctaaaa tttcaagcga tagaatgtat ttgcatagct
     1201 atgaaattaa aatttttaat tatcatttta gggctaattt agatagtggt tttgcaaaat
     1261 ttggctttga tataaaaaat ttagattttt aaagccattt aagaaaaaat tttgtataat
     1321 gcaaggttta atttaaaaat tttatagaaa ggtgataaag tgtttgagtt agtcagcgaa
     1381 tcttttaaat cagcgattaa taaattacgt tttgttgatg atgaaaaagc acttaagaac
     1441 gctttagaaa ccttaaaaaa agctctttta aaagcagatg ttcaccataa ggtaactaaa
     1501 gagcttttga ctttgataga agaagatgca aagcaaaacg gaataggtca aaaacaattt
     1561 ttaaatgcca ttaaaataaa tttagaaaat attttaagtg tcaatggcaa aaatcaaggt
     1621 tttgtttttg cttctaaacc cccaacagta gttctaatgg caggtttgca agggggcggt
     1681 aagactacaa gcactatcaa acttgcaaat tatttaaaat tacgcaataa aaaagtttta
     1741 gttgcagctt gtgatttaca gcgtttagcg gcagtggagc agctaagaca actttgtgaa
     1801 gctaatgaaa ttgaactttt cttcatagaa aatgaaaaag atcctattag ggttgctaaa
     1861 gaggctttaa aaaaggctga aagttctatg gtggatgttt tgcttgtgga tactgctgga
     1921 cgtttggcta tagatgaagc tttgatggat gagttaagag cagttaagga tgtcttaaat
     1981 cctgatgaga ttttttatgt tgctgatgca atgagtggtc aagatggggt taagactgct
     2041 gctagtttta atgaagtttt aggtatcagt ggggtaattt tatcaaaatt tgatgcagat
     2101 actaaaggtg gagtagcctt aggtatagca aaacaaatcg gtattccttt aagatttatt
     2161 ggtgtgggtg aaaaagtagc agatttagaa gtttttatac cagatcgtat agtaagtcgt
     2221 attatgggtg agggtgattt ggcaacttta gctgaaaaaa ctgctgcgat tattgatgaa
     2281 aaagaggcta aaaaactcaa tcaaaaaatt aaaaaaggtg aatttaattt taatgatttt
     2341 cttaaccaaa tggaaagtat taaaaaatta ggaagtatga agtctttaat cggtatgata
     2401 ccaggacttg gtggaatggc aaatgcggta aaagatatag atttggataa ttctaaagaa
     2461 atcatacgca ttaaagcaat gatttcttca atgactccaa aagaaagaga aaatcctgat
     2521 ttattaaata atgctagaaa gcgtcgtata gcagagggag caggtctttc tcaggtagaa
     2581 gtcaatcgtt ttttaaaaca atttagcaat gcagcaaaac ttgcaaaaag attttcaggt
     2641 aaaaaaggaa tggagagttt gacacaaatg atgagtcaag ctagaagaca gttttaaatt
     2701 ttatttataa atacttttta tagtatctat aaataaaatt tttaattttt aaggagtgta
     2761 aatgacagtt attagactta caagaatggg tagaaccaaa agaccatttt atcgtattgt
     2821 agttacggac agtagaaaac gtcgtgatgg tggttggata gaaagtattg ggtattataa
     2881 tcctatggta gaacctgaag taattaaagt tgatgcagag cgtttagctt attggaaaag
     2941 cgttggtgca aaacttagcg ataaagttgc ttctatcact agcaaataat catggtagag
     3001 aattttctta gagaatacgc aaaattaatt gcagattatc ctgaacagat tgatactcaa
     3061 aaaattgaat taagtgaaaa tttttttgag attgttcttt ttgcacataa ggttgataca
     3121 ggtaagctta taggtaaaaa tggaaaaatg atcaatgcta taaaaaccgt aatctctgct
     3181 tataagagca aggatgcaag ttcttataga gtaacggtaa aagcacttga gtgaaaaaga
     3241 ttttgttcaa gttgcaaaac ttggtaaaac tgtgggtctt aagggttatg taaaattgca
     3301 taacctgagc gacttttctt ctcaatttaa aaaagatgct acttttttta taaaaaacac
     3361 caaagaaatg ttaaagatta agcattataa tgcaaacaat tctactgttt tatttgaaaa
     3421 ttatgaagat atagaaaagg ccaaagaatt aactaatctt attctttttc agagtatcga
     3481 gaaaagcaga caaacttgta aattaaaaaa agatgagttt ttttattttg atattttaga
     3541 gtgtgaagtt tttgaagaag ataaaagatt aggtaaagtg gttgatatct tggaaactgg
     3601 agcttcttat ttatttgaaa ttcaaagtga tgaaaaatgg gttgaaaaaa aatatcctaa
     3661 aatatttttt attccatatt tg
//
LOCUS       DARBAR010000131         3622 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.131, whole genome shotgun sequence.
ACCESSION   DARBAR010000131 DARBAR010000000
VERSION     DARBAR010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3622)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3622)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3622
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.131"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            54..386
                     /locus_tag="SB815_001603"
     CDS             54..386
                     /locus_tag="SB815_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG0907316.1"
                     /translation="MKKYHSLCPIETTLNLIGNKWKILIIRDLLQGTKRFGELRKSIS
                     FTKNQNISQNVLTQNLRELEEAKLIKRKVYAEVPPKVEYSLTSLGNSLESILKSLENW
                     GNSYKNIV"
     gene            471..1417
                     /gene="arsP"
                     /locus_tag="SB815_001604"
                     /pseudo
     CDS             471..1417
                     /gene="arsP"
                     /locus_tag="SB815_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_129557825.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="organoarsenical efflux permease ArsP"
     gene            1427..1749
                     /locus_tag="SB815_001605"
                     /pseudo
     CDS             1427..1749
                     /locus_tag="SB815_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            complement(1757..2188)
                     /locus_tag="SB815_001606"
     CDS             complement(1757..2188)
                     /locus_tag="SB815_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEG0907317.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWVKWIEWLRISGMPIEQVKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKLHKFKG"
     gene            2268..3622
                     /locus_tag="SB815_001607"
                     /pseudo
     CDS             2268..3622
                     /locus_tag="SB815_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
BASE COUNT         1296 a          499 c          469 g         1358 t
ORIGIN      
        1 gagataaatt tttttaaaaa atatgttata attttaaaaa ataaggattt ataatgaaaa
       61 aatatcattc tctttgtcct attgaaacca cgcttaattt gataggaaat aaatggaaaa
      121 ttttaattat tcgagatttg ttgcaaggga ctaaaagatt tggagagtta agaaaaagca
      181 tttcatttac aaaaaatcaa aacatctctc aaaatgtcct tacacaaaat ttacgagaat
      241 tagaagaagc aaaactgatc aaacgcaaag tttatgcaga agttcctcca aaggttgagt
      301 actcacttac atctttaggc aatagtttag aatccatctt aaaaagtctt gagaattggg
      361 gaaatagcta taaaaatatc gtttaagtaa taaattaata tatcaatata tattaattta
      421 ttaatttata catgttatat tttttggaaa tatttttaaa aggataaaaa atgcagtctt
      481 ttttaaatac tttcaaagag tttttatatc tatttactga gctttctgta ctttttatag
      541 ctatttcttt tttagtttct attatcaatc aaaaatacga aggaattttt aaaaacaact
      601 tgctggtgac aaaatttcaa gttattttaa agctatattt ttaggtgctt taacgccatt
      661 ttgttcctgt tctaccatac cgcttttaag agctttttta gaagcgaaag taaaacttag
      721 catagcttta gcttatcttt ttacttcgcc tcttattaat cctattattt tttccatgct
      781 ttttgtaact tttggtttaa agttaagttt gatttatgtg gtttttttga tatttttgat
      841 atttattatt tcttttgttt tttctaaatt taaggaagat agttttttaa aacatattcc
      901 taaaaataca aaatcaagta tttttaccca aagcgctcac aatcctagca attttatttt
      961 taaacaaaaa tcatgctgtg caaatactca agataagtct aaaaatataa cgataaacta
     1021 taaagaatta ttcaaagaaa gtttgaaaaa ttataaaaaa ttattacctt atatcgttgt
     1081 ggcagttttt atcggtgctt ttattcatgg ttttattcct caagaaattt tacaaaaata
     1141 cctaaatggc aatgaaattt taagcattgc attagcggct tttttaggaa ttttccttta
     1201 tttaagagta gaaactatta ttcctatagg cttagcactt ttacaaatgg gaatttctca
     1261 aggagtgatt atgagttttt taatcgctgg tgctggatgt tctttacctg agcttgtttt
     1321 actcaaacaa atgtttaaaa tgaaattttt atttttattt gttatgatta ttttaggcgt
     1381 ggctatatct tttggaattt ttattaattt aatttaagga aataaaatgc aaaaattttt
     1441 agccattatt tcggcgatca atgatgaaag tagggttttg attttacatc atcttttaag
     1501 atacaaagaa ctttgtgttt gtgatctaca agagctctta aacatgggtc aatcaagact
     1561 ttcaagacat ttaaaaattt taaaagatgc gggtttttgt atgtaaggcg tcaaggaact
     1621 tgggcgtatt atgggattaa taatgagctt ttaaagctgc atttagatct ttttgaaaat
     1681 atcaaaaatt tagagcttaa aaatgctatt aaaaaaaatg aaaatattat tacccaaatt
     1741 tgcccttaat ataaaatcaa cccttaaact tatgcaattt atcacaaggt tgatagtcct
     1801 tgctttctgg attaaaccca tcgacttcat ttgcaagcat ttcttcataa atttttatct
     1861 ttttgcttaa aactttttca ctttctttta atgttttaat ctggttttgt aattttttct
     1921 ttgtttgctt taacatctct tgtctttctt tagcagtttt tatacccaaa gagcaaagtt
     1981 ttatataatg tttgacttgt tctattggca tacctgaaat tctaagccat tctatccatt
     2041 ttacccattc tatatcgctt tttgaaaaat atttcacact attttcatct ttttgaacaa
     2101 aaggaaacaa acctttttta gcccaaaatc ttaaagtatg agcactaatt tttgtttctt
     2161 tttctacttt ttttatagta taagccatat tttctccttt atttaagata aaaataaaaa
     2221 tttattttat ttttttgtga taaaataata gccaaattat tagttttatg ctaaaaataa
     2281 caaagattaa aaggaaaata atgaatagta ttaaaatcaa actttctctc attgcaaatt
     2341 taattgcaat ttttgcctta attgttctag gtattgtaag tttttatttt acaaaaacct
     2401 cactatatga aagcactctt aaaaatcaaa ctgatctact taaagtcaca caatctaccg
     2461 ttgaagattt ccgttccaca aatcaatctt ttactagagc tttagaaaaa gatatcgcga
     2521 acttacctta tcaatcttta atcactgaag aaaatattat taacaatgtt ggtccaatat
     2581 tgaaatatta tcgtcatagt ataaatgcac taaatgttta tttaggttta aacaatggaa
     2641 aagttttact tagtcaaaaa tctaatgatg caaaaatgcc tgaattacgt gatgatttag
     2701 atataaagac aaaagattgg tatcaagaag ctttaaaaac aaatgatatt tttgttacac
     2761 cagcatattt agatacaatt ttaaaacaat atgtaataac gtattctaaa gctatttata
     2821 aagatggcaa aatcatagga gtactgggtg tcgatatacc atcagaagat ttgcaaaatt
     2881 tagttgcaaa cactcctgga aatacttttt ttatttgatc aaaaaaataa aatatttgca
     2941 gcaaccaata aagaattatt aaatccatcc attgatcatt ctcctgttct aaatgcatat
     3001 aaactcaatg gtgataacaa cttcttctct tataagttaa ataatgaaga aagacttgga
     3061 gcttgtacta aagtctttgc ttatacagct tgtattaccg aaagcgctga tattataaat
     3121 aaacctatat ttaaagcagc atatatacaa gttatagcct taattgttat gatatctatt
     3181 agcgtcatcc tcctttattt catcgtatca aaatacctct ccccacttgc agctatccaa
     3241 acaggtttaa cttcattctt tgattttatc aactataaaa caaaaaatgt ttccactata
     3301 gaagtaaaaa gcaatgatga atttggacaa atctcaaatg ctatcaatga aaacattctt
     3361 gctactaaaa gaggcttaga acaagacaat caagccgtta aagaatcagt tcaaaccgta
     3421 tcagttgtag aaggtggtaa tttaacagca agaattactg ctaatccaag aaacccacag
     3481 cttattgaac ttaaaaatgt tctaaataaa cttcttgatg ttttacaagc tagagtaggt
     3541 tctgatatga atgctattca taaaattttt gaagaataca aaagcttaga ctttagaaat
     3601 aaattagaaa atgctagcgg ta
//
LOCUS       DARBAR010000132         3617 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.132, whole genome shotgun sequence.
ACCESSION   DARBAR010000132 DARBAR010000000
VERSION     DARBAR010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3617
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.132"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(9..95)
                     /locus_tag="SB815_001608"
     tRNA            complement(9..95)
                     /locus_tag="SB815_001608"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(59..61),aa:Leu,seq:caa)
     gene            276..2528
                     /gene="flgL"
                     /locus_tag="SB815_001609"
     CDS             276..2528
                     /gene="flgL"
                     /locus_tag="SB815_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HEG0907318.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQSYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTRPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDKTE
                     LNNIIQAAQDEGITMEDVTNRVMTAALGNPNNGDITNLNNPVTIQINGQNFEIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            2638..>3617
                     /locus_tag="SB815_001610"
     CDS             2638..>3617
                     /locus_tag="SB815_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEG0907319.1"
                     /translation="MLAPGMGEWVYKANLFLFGEFAYYYPFFLFILNYVYYKRNYKLA
                     NFTRRELFGIGFAFFSSLLLFAVFYPNSGYILELAYAIFSTILGHTGSGIFALLLLLF
                     SLVLLFPKFAKEILKIELDFTYLLKVEQAFKSLLMRVFGGENEKEDVGKSEPIVPKLN
                     ILQDSIYGNLQINKKGETNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVHEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKL
                     EDIKQIDTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELELRENLIKKE"
BASE COUNT         1375 a          505 c          598 g         1139 t
ORIGIN      
        1 aaaataagtg gtgcccgagg tcggactcga accgacacaa ggttgccctt accagatttt
       61 gagtctggcg cgtctaccag tttcaccact cgggctcatt tttaagattt aaagctaaaa
      121 ttatactttt ttaggctaaa aaatacttta aaaataaaaa gtattttcaa aaagacaata
      181 taaaattata taatttaaat ttttggaaca gttattgctt ttgtttatta gcaatgtttg
      241 aaaagatttt aactttaata ctttagagga aaaaaatgag aattacaaat aaacttaact
      301 tcacaaatag tgtgaataat tctatgggcg gtcaaagtgc tttatatcag atatctcaac
      361 aacttgcttc aggtttgaaa atacaaaatt catatgaaga tgcaagcact tatatagata
      421 atacgcgtct tgaatatgaa attaaaacgt tagaacaagt aaaagaatca acaagtagag
      481 ctcaagaaat gactcaaaat agtatgaaag ctttacaaga tatggttaaa cttcttgaag
      541 attttaaagt taaagtaacc caagctgcaa gcgatagcaa ttctcaaacc tcaagagaag
      601 ctatagcaaa agaactagaa cgtataaaag aaagcatagt tcagcttgca aataccagtg
      661 ttaatggtca gtatcttttt gcgggttctc aagttgcaaa caaacctttt gattctaatg
      721 gaaattatta tggagataaa aataatatta atgtagtaac tggagctgga actgaaagcc
      781 catacaatat accaggttgg gatttatttt ttaaagcaga tggagactat aaaaaacaaa
      841 taagcactaa tgttagtttt acagataatc gttgggattt aaataaagac cctgataaaa
      901 ctaaatatct cacaggagat tctaaatggc aacaacttat cggacaaagt tatgtaaaag
      961 ataatagctt agatgctgac aaagactttg agtatgatga tagcaaacta gattttcctc
     1021 caacaactct ttatgttcaa ggtacaagac ccgatggaac aagttttaaa agtgctgtac
     1081 tcgtcaaacc cgaagatact ttagaagatg taatggaaaa tattggagct ctttatggta
     1141 atactccaaa taataaagta gtagaagtaa gtatgaatga tagtggtcaa attcaaatta
     1201 cagatctaaa gcaaggtaat aataaactcg attttcatgc tgtagctttc acaccacaag
     1261 ctgatgataa aactgaatta aataatatta tccaagcagc acaggatgaa ggcattacaa
     1321 tggaagatgt tacaaacagg gttatgactg ctgcactagg aaatcccaat aatggagata
     1381 ttacaaattt aaataatcct gtaaccattc aaattaacgg acaaaacttt gaaattgatt
     1441 taaaacaaac tgattttatc aaaagtaaaa tgacagatac agatggaaat gctgctaatg
     1501 gagctgatta cgataatgtg tattttgaaa aaaatggcaa tactgtttat ggtaatgttt
     1561 ctcaagttat caaaggaagc aatgcttatg ccactgattc aaccaaactt agcgaggtaa
     1621 tggcaggaga tagcctaaat ggtactactt taaatttaaa agtcaattcc aaaggtggaa
     1681 attcttacga tgttactata aatttacaaa cttcaactgt aagctatcct gatcctaata
     1741 atccaggtca aaccataagc tttcctatta tgcatactaa tcctgcaact ggaaatagtg
     1801 gggttgttac aggatcaaat gatattactt atggtcaaat taatgatatt ataggtatgt
     1861 ttgctgcaga taaaattcct acaacaacca tacaagccaa taatggtcaa attaataatg
     1921 cagattatac ccaaatacaa caactcatga aagattcaca agctactgtt gatgtaagta
     1981 tggattataa aggtcgtatt agtgttactg ataaactttc atcaggaacc aatatagaaa
     2041 tttctcttag tgattctcaa agtggccaat ttccagcacc tccttttacc acaacttcta
     2101 ctgtacaaaa tggtccaaat tttagtttta gcgcgaataa ttctttaact atagatgagc
     2161 caaatgtgga tattattaaa gatttagatt caatgattga tgctgtttta aaaggcaata
     2221 tgagagcaga ctccgaaagt gaaaacccta gaaatacagg tatgcaagga gctttagaaa
     2281 gacttgatca tttagcagat catgttagca agcttaatac aactatggga gcatatcata
     2341 atactatcga aggtgttaat acacgcacat catttttaag cgttaatgtc caaagtataa
     2401 aatcaaatgt gattgatgta gattatggtg aggcaatgat gaatttaatg caagttcaac
     2461 ttgcatatca agcttctctt aaagctagta caacaatttc tcaacttagc ttattaaatt
     2521 atatgtaaaa ttttttatgg tataatttgg ctttgatttt attttcaagg aaagaatatt
     2581 aaaaaagaag ccatttttac cagctccacg cttgttattt tttatctttg tctttgtatg
     2641 ctagcacctg gcatgggaga atgggtttac aaggctaatt tatttttatt tggagaattt
     2701 gcgtattatt atcctttttt cttatttatt ttaaattatg tttattataa aagaaattac
     2761 aaattagcta attttacaag aagagagctt tttggtatag gatttgcctt tttctcgagt
     2821 ttgcttttat ttgcagtttt ttatcctaat tcaggctata tactagagct tgcttatgcg
     2881 attttttcta ctattttggg gcatactggg agcggaattt tcgctctttt acttctacta
     2941 ttttctttgg ttttattgtt tccaaaattt gcaaaagaaa ttttaaaaat agaattagat
     3001 tttacttatt tattaaaagt agagcaagct tttaaatctt tacttatgcg tgtatttggt
     3061 ggagaaaacg agaaagaaga tgtaggtaaa tcagaaccta tagttccaaa attaaatatt
     3121 ttgcaagata gtatttatgg aaatttacaa ataaacaaaa aaggggaaac caataactta
     3181 gaacagataa ttaaagatag caatatcaat gcaagtaaaa attcaattac cacggccaag
     3241 gaaaattttg aaaaactaaa aaatcaaatt ttagatgaaa ccatagagat tgataaacaa
     3301 agtttaaaag aatcaagaag ttttgttcat gagcattctc aacaagtgcg aaatttcgca
     3361 caaaaggcta gtaaaatgag cattagtctt gatgaagatt ttaattttat ttcagaagaa
     3421 gaggtagata tgattcctga acgtttttta aaacctaaaa aacttgaaga tataaagcaa
     3481 atagatacaa ataaaaattt agatgagcca agttataaac gtaaaaatat tgaaattcca
     3541 gtttctaatc aagaagttaa accaaaaatt tttacaaaag agcttgaact tagagagaat
     3601 ttgataaaaa aagaaaa
//
LOCUS       DARBAR010000133         3616 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.133, whole genome shotgun sequence.
ACCESSION   DARBAR010000133 DARBAR010000000
VERSION     DARBAR010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3616)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3616)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3616
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.133"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            24..656
                     /locus_tag="SB815_001611"
     CDS             24..656
                     /locus_tag="SB815_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004087550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG0907320.1"
                     /translation="MNFNELPNSFVLKTNHDCGGYVIVENKQEFLRDTVVFSNAMKKL
                     KKHLEWNYYSVFREWHYKDIEPRVFAEELLLGENKKPADTYKFHIFDKENLSNNFIQV
                     TTDRFDNYQRAMFDLSWNLAPFNFMYDNKNVTMIPKKPNLLDSMINISLILAKPFDYV
                     RVDLYQFDKKIYIGELTFTHGAAGEKVIPKEWDKKLGDLWRLKRLDNASK"
     gene            643..1747
                     /locus_tag="SB815_001612"
                     /pseudo
     CDS             643..1747
                     /locus_tag="SB815_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344820.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
     gene            1797..2969
                     /locus_tag="SB815_001613"
     CDS             1797..2969
                     /locus_tag="SB815_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate aminotransferase family
                     protein"
                     /protein_id="HEG0907321.1"
                     /translation="MLIKLNDYEKNITQKIKDLKNASGSHSPSIFTMAEQIPELNIKI
                     DSCFLSNPYATALFLRYLKEELIDGQKLRSVLEFYPSQNSIIAKTVADFIGIDPKNVF
                     IGNGAIEIIQAVMHNFVGKKIIVNIPTFSSYYEFAKSETNVVYYQLSKEDNYNLNIEH
                     YLNFVKNENPDSVVLINPNNPDGGYINYEKLRYILSELKYVKNIIIDESFIHFAYENK
                     DYNGINIEYLFKEFHNTIIIKSMSKDFGVAGIRIGYAIMSEDKIRGLLKNGYLWNSSG
                     LSEYFLRLYVRKNFFDEYDKVRREYIQETQTFFRKLSGIKQFKVYPSMANFALVELLD
                     GSSSTDFVAKMLIKYGIYMRTCNDKIGLEGEFIRIASRTLEENDMVLKSICDVFKE"
     gene            2973..3608
                     /locus_tag="SB815_001614"
     CDS             2973..3608
                     /locus_tag="SB815_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IB family hydrolase"
                     /protein_id="HEG0907322.1"
                     /translation="MSKEILALFDFCETLTNFQTLDRYLPLAGSKNINYTQSKNLARR
                     ERFQRENLPYPRYEWLIDLDVDLAEEIAQEFVYTDVMANLNQNVMDRLFWHQDEGHTI
                     VIVSGGLTIYIKEFARIYNIENIVAVDLEIYKNKLTGNIDGIHTMQERKLYKLAQKFN
                     LKQFDLKNSYAYSDCVSDIPLLSLVGNPNVIECGKDLQWARILGFNILLKY"
BASE COUNT         1316 a          363 c          620 g         1317 t
ORIGIN      
        1 ggatatataa aaatatatat gatattaatt tcaacgaatt acctaattct tttgttttaa
       61 aaactaatca tgattgtgga ggttatgtta tagttgaaaa taaacaagaa tttttacgag
      121 atactgttgt tttttcaaat gctatgaaaa aattaaaaaa acatttggaa tggaattatt
      181 atagtgtatt tagagaatgg cattataagg atatagagcc tagagtcttt gcagaagaat
      241 tattgttggg agaaaataag aaaccagcag atacatataa atttcatatt tttgacaaag
      301 aaaatttatc taacaatttt atacaagtta caacagacag atttgataat tatcaaaggg
      361 ctatgtttga tttatcatgg aatttagcac cttttaattt tatgtatgat aataaaaatg
      421 ttacaatgat tcctaaaaaa cctaatcttt tggattctat gataaatatt tctttgattc
      481 ttgcaaaacc ttttgattat gttagagtcg atttatatca gtttgataag aaaatttata
      541 ttggggaatt aacttttact catggtgcag ctggtgaaaa agttattcct aaagagtggg
      601 ataagaaatt gggggatttg tggcgtttga aaaggttgga taatgcaagc aaataaaaat
      661 attcaaaaac ttactcctta tttatctatt ccacacaaaa tatggaattc gagtcaatca
      721 aatattttga aacttgattg gaatgaggct acgattccgc catctcctta tgttatagaa
      781 agcattaaaa aatttttagt taatggaaat ttaaactggt atccgaatac aaaaaattta
      841 tatttattgg ataaaatagc agaatatacc aaacagataa atagttcttt tgttgagttg
      901 tttgaaggat ccgattctgc tcatgaatgc atcatcgatg tgtttttaga taaatgtgat
      961 aaaatcggaa ttgtttcccc tacttatgat aattttagat ctagagctaa tggggtaggt
     1021 attgaaacta tttcatttac acttgatgat aattttaatt tagattttga tagtttagaa
     1081 tattttatac atgaaaagag aataaaactt ttatatttat gtaatccgaa taatccaacc
     1141 gggaaatctt ataatattca aaaaattaag tctctaatta ttaataatcc taatgtaatg
     1201 tttattattg atgaagccta ttatgaattt actagccaga gtgtatgtga tttggttgaa
     1261 caatgtaata atttaattat aactcgaaca ttttctaagg cttttgcatt ggcgagtttt
     1321 aggataggat atataatttc acatccagaa aatatagaat caataaataa attaagaaat
     1381 ccaaaaagtg ttcctatgct atctcaaatt gcagctaatg cagcattgga ggatttacaa
     1441 tatatgagag attatgtaga tgaagtgagt tgtgctagga tggaatttgt gaaatttttg
     1501 aataccttaa ctactggcgg ggggggggat attcaatgat tctgtagcaa atttcgtttt
     1561 gattcaaaat gagaatatat ctctttttgt agggtttttg gaaaaagagg gtatttttat
     1621 tcgcaactat tctcatctta tttctaaaaa ttgtcgtatt agtataggta caagaaatca
     1681 aatgagttat gttgctgaaa aaatacaaga atttgctaaa aaacaaggag gttttcacct
     1741 tgtttgatgc aattatagta agaattattt ttacttttgt attcttcaag gatttgatgt
     1801 tgataaaact taatgattat gaaaaaaata ttacgcaaaa gataaaagat ttgaaaaatg
     1861 cttctggtag tcatagtccg agtattttta ccatggctga gcaaataccg gaattaaata
     1921 taaaaattga ttcttgtttt ttatctaatc cctatgcgac agctcttttt ttaagatatt
     1981 taaaagagga gttaatagat ggtcaaaaac taaggtcagt tttggaattt tatccttctc
     2041 aaaatagtat aattgccaaa actgttgcag attttatagg aattgatcct aaaaatgttt
     2101 ttattggaaa tggtgctata gagattattc aagctgtaat gcataatttt gtaggtaaaa
     2161 agatcattgt taatattcct actttttcat cttattatga atttgctaag tctgaaacaa
     2221 atgttgttta ttatcaactt tctaaagaag ataattataa cttgaatata gaacactatc
     2281 ttaactttgt taaaaatgaa aatccagata gtgtagtttt aataaatcct aataatccgg
     2341 atggaggata tattaactat gagaaattaa gatacatttt aagtgaattg aaatatgtta
     2401 aaaatattat tattgatgag tcctttattc attttgctta tgaaaataag gattataatg
     2461 ggattaatat tgagtatctt tttaaagaat ttcataatac tattattatc aaaagtatgt
     2521 ctaaagattt tggcgtagca gggattagaa taggttatgc aattatgtca gaagataaga
     2581 taagaggttt attgaaaaat ggatatttgt ggaattcttc gggacttagt gaatattttt
     2641 taagattata tgtaagaaaa aacttttttg atgaatatga caaggttaga agggaatata
     2701 tacaagaaac tcagactttt tttagaaagt taagtggaat taaacaattt aaggtttatc
     2761 ctagtatggc taattttgct cttgtggagc ttttggatgg tagttctagt acagattttg
     2821 ttgctaaaat gctgattaaa tatggtattt atatgagaac ttgcaatgat aagataggtt
     2881 tagaaggaga atttattaga attgcaagtc gaactttaga ggagaatgat atggtattaa
     2941 aatcaatttg tgatgttttt aaggaataaa atatgtctaa ggaaattttg gccttatttg
     3001 atttttgtga aactttaact aattttcaaa cgcttgatag atatttgcct ttagctggat
     3061 ctaaaaatat taattatacg caaagtaaaa atttagcaag aagagaaagg tttcaaagag
     3121 aaaaccttcc ttatcctcgt tatgaatggt taattgatct cgatgttgat ttggcagaag
     3181 aaattgctca agagtttgtt tatactgatg tgatggcaaa tcttaatcaa aatgttatgg
     3241 atagactttt ttggcatcaa gatgaaggcc acacaatcgt tatagtatca ggtggtctta
     3301 cgatttatat taaagaattt gctagaattt ataatattga gaatattgtg gccgtagatc
     3361 ttgaaattta taagaataaa ttaactggaa atatagatgg aattcatacc atgcaagaaa
     3421 gaaaacttta caaattagct caaaaattta acttaaaaca atttgattta aaaaattctt
     3481 atgcgtatag tgattgtgta agcgatatac ctttattatc attagttgga aatccaaatg
     3541 ttattgaatg tggtaaagat ttacaatggg ctagaatttt aggttttaat attttgttga
     3601 agtattaaat tataaa
//
LOCUS       DARBAR010000134         3588 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.134, whole genome shotgun sequence.
ACCESSION   DARBAR010000134 DARBAR010000000
VERSION     DARBAR010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3588)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3588)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3588
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.134"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            38..838
                     /gene="rsmA"
                     /locus_tag="SB815_001615"
     CDS             38..838
                     /gene="rsmA"
                     /locus_tag="SB815_001615"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEG0907323.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KMLFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDSYLKIYDKLKDEYGRKQRDK"
     gene            807..2801
                     /locus_tag="SB815_001616"
     CDS             807..2801
                     /locus_tag="SB815_001616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEG0907324.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKEISENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFSRTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKTTKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            2837..>3588
                     /locus_tag="SB815_001617"
     CDS             2837..>3588
                     /locus_tag="SB815_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEG0907325.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNE"
BASE COUNT         1371 a          536 c          650 g         1031 t
ORIGIN      
        1 agacttaatt aagaattttt agataaaatt atttcttatg gttaaagcaa aaaaacaata
       61 cggacaaaat tttttaatcg ataaaagcgt attagcaaaa atcatccaag ccatacccaa
      121 agagatgaac aatattattg agattgggcc tggcttaggt gatttaacgc aagaactttt
      181 aaaaatttct caagtaaaag cttatgaaat cgataatgat ctcataccta ttttaaaaaa
      241 gaaatttcaa aaagaacttg aatgtggaaa atttaacttg atccatcaag acgcaagcga
      301 agcttttaat cctagtcttg atgaaaaacc atattttttg gttgcaaatt tgccttatta
      361 tgttgcaagt cacattatat taaaagcttt agaagataaa aattgtctag ggcttattgt
      421 aatggtgcaa agagaaatgg ctgaaaaatt ctgcgctaaa gaaggaaata gtgagttttc
      481 ttccttaggt gttttaagtg caatgatttg cgaaagaaaa atgctttttg atgttgatcc
      541 acaatgtttt aatccaccgc caaaagttat gtcagcggtg atgagtttga ttaaaactaa
      601 ggattttgat gaactttgcg aaatagaaaa tttcaaaaat tttctaaaag actgttttaa
      661 agctcctaga aaacaactct taggaaattt aaaaacatat aaagcaaaag ttttagaagt
      721 tttaagcact cttggcttaa aagaaaacat cagaccacat gaaatttgcg ttgattcata
      781 ccttaaaatt tatgacaaat taaaggatga atatggacga aaacaaagag ataaataaaa
      841 acgaacaaaa tccgaactca aattcaaaaa acaataaacg ctataaatat aaaaatcgca
      901 gaaaaaaatt agccgattct ttacaaaatg aaaacgatac tccaaaaatc gatcaaaatt
      961 ccaacaagga aatttctgaa aactcagaaa ataaaactga gaaaaaaaag aaaaaaaatc
     1021 gcaatcttcc ttcaaaactc acaggtaatg aagattggca aatcgctctt gcagaatgta
     1081 tagaagctaa ccgtgtttca catgaaaacc gcttacaccc tttaaaatat aacaattcta
     1141 gcgaacataa aatccgcatc actcctttag ggggcttagg agaaattggt ggaaatatca
     1201 gtgtttttga aaccaataaa gatgcaatta tagtagatat aggtatgagt tttcctgatg
     1261 gaactatgca tggggtagat attatcatcc ctgattttga ctatgtaaga aaaattaaag
     1321 ataaaattcg tggtatagtg atcactcatg cacacgaaga tcatatcggt gcggtgcctt
     1381 atttctttaa agaattccaa tttcctatct acgctacacc tttagcttta ggaatgattt
     1441 caaacaaatt tgaagaacat ggcttaaaag cagaacgcaa atggtttcgc cctgtagaaa
     1501 aacgccgtgt ttatgagata ggcgaatttg atatagagtg gatccacatc acgcattcta
     1561 tcattgatgc ttcagcactt gcgatcaaaa caaaagcagg aacgattatc cacacaggtg
     1621 attttaaaat cgatcaaact ccaattgatg gctatccaac agatttagga cgtttagcac
     1681 attatggaga agaaggagtt ttatgtcttt taagtgatag tacaaattct tataaagaag
     1741 gttatacaaa aagtgaaagc tctgtagggc caacttttga tcaaattttt tcgcgtacta
     1801 agggtagggt gatcatgagt acttttagtt ctaatatcca ccgtgtttat caggctatca
     1861 cttatggttt aaaatacggc agaaaagttt gtgttattgg tcgttctatg gaaagaaatc
     1921 tttatactac tatggaatta ggctatatta aacttgatag aaaaattttc atcgatgctg
     1981 atgaggtaag caaatataaa gacaatgaag tgcttattgt aactacagga agtcaaggcg
     2041 aaaccatgag tgcgctttat agaatggcaa ctgatgagca taaatttata aagattaagc
     2101 ctacagatca agtaatcatt tcagctaaag ccataccagg aaatgaagca agtgtttctg
     2161 cggtgcttga ctatctttta aaagcaggag ctaaagtagc gtatcaagaa tttagtgaaa
     2221 ttcatgtaag cggacacgct agcatagaag agcaaaaact tatgctaacc cttactaaac
     2281 ctaaattttt cttaccggtt catggagaat acaatcatat caccaaacac aaagaaacag
     2341 cgatgaaatg cggtatcccc gaaagaaata tctatcttat gagtgatggc gatcaagtag
     2401 aactttgcca aaaatatgtc aaacgcataa aaaccgtaaa aacaggtaaa gtttttgtgg
     2461 ataatcaaat caacaaacaa attgccgatg atgtagttat agatcgtcaa aaacttgcag
     2521 atagtggtat agtagttatt atcgcacaaa ttgacaaaac tacaaaaaca ctgatcaaca
     2581 agccaagagt gtttagctat gggttagtag ctgacaaaca cgatcatgct tttagtaaag
     2641 atatggctga agttttaggg caatttttca tcaatgttaa agatgaagta ctcaatgatc
     2701 caagattttt agaaaaccaa atccgccaag tcttaagaaa gcatatcttt agaaagatta
     2761 aaaaataccc aaccatagtt ccaactattt ttgtaatgta aaaaagggca aaaacgccct
     2821 ttttaaggaa gatcaaatga gaattaataa atttatatcc cataacactc gttattcacg
     2881 ccgtgaagct gatgaactta tcaaacaagg cttagtaaaa ataaacaaca aaattgccct
     2941 tttaagcgat gaagttaaat ttgatgataa agtttttgtt aaaggtaaaa gagtgcaaaa
     3001 aagaacgcaa tttagcgtga taatctacca taaacaaaaa ggtgaaattg tcagtaaaaa
     3061 agacgatcgt ggaagaaaaa ctatatacga taccttgcca agacaattta gtacttggct
     3121 tagcgtaggt agattggatt atgcaagcga gggcttgctt ttgcttacag attctcctgt
     3181 gattgccgat gctttaatgc atagcgattt agaaagagaa tactacctta aagttaaagg
     3241 cacggtgagc aaacaagtca tcgaagccat gcaaaatgga cttgagatta aaaatgaaaa
     3301 aaaaggcgca catgcaaaaa ctaaaattac ctctatgagt tttgctcctt ttatagactt
     3361 tgaaattttt ggatcaagtg gaggttatac taagcttaga gtggttataa atgaaggtaa
     3421 aaatagagag cttagacgct tttttggaca ttttgatctt gaagtcatgg atcttaagcg
     3481 tgttgctttt ggggctttag atcttggtat gttgaaggca ggaaaacatc gctatttgga
     3541 aaatggagaa tatgaaaaat taagagattt tttaaaattt aatgaaat
//
LOCUS       DARBAR010000135         3551 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.135, whole genome shotgun sequence.
ACCESSION   DARBAR010000135 DARBAR010000000
VERSION     DARBAR010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3551
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.135"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            87..1595
                     /locus_tag="SB815_001618"
     CDS             87..1595
                     /locus_tag="SB815_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEG0907326.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFVKERKEITYKDFDLFSKK
                     LASEILKTLGNDNPTQAPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFNIDESLIKHAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNALKKMLFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRADNQIKYMGHRIELGEIESVINSHVNIKNSACIFKEDI
                     ICFYESEEEINFKDFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            1635..1862
                     /locus_tag="SB815_001619"
     CDS             1635..1862
                     /locus_tag="SB815_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG0907327.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLETAMKD"
     gene            complement(1859..2929)
                     /locus_tag="SB815_001620"
     CDS             complement(1859..2929)
                     /locus_tag="SB815_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG0907328.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEEKLLQKAYIYPKSLRVANR
                     HWALVDMVLELVQKEDILKKESVLSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGMELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKAYVDYFASSLEWVKNKYFPHKNSLFTPVNWEEYEQNYTLTHMLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            complement(2951..3541)
                     /locus_tag="SB815_001621"
     CDS             complement(2951..3541)
                     /locus_tag="SB815_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002845538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG0907329.1"
                     /translation="MAPWYVDGVIDNSGVCLPFLACILGREMNQGEFYFEGSGYRLYC
                     FVYKYWNRNMNSSYYFGDENYLIRAVLNSNHLQIQSNLNKNTIFVSYHSIQDMGAPVQ
                     NKIELYKCYQELGYDATLHLIKDENDIDGRFVKSLEHGLRMTDRALFRKELPLMLEKL
                     QGRKSFMQENSISYPCGNKVFVFKDLEDKFELEMIN"
BASE COUNT         1275 a          556 c          460 g         1260 t
ORIGIN      
        1 atttcaaagc tttggtttat gagcatataa aggccttttt tattaattta tcgatattat
       61 attacaaaaa attaaaaagg taaatcatga caactcatat ctatgatttt ttagaaaaaa
      121 gtttaatcaa atttagcgaa aaaactgctt ttgtagaacc ctttgtcaaa gaaagaaagg
      181 aaatcactta caaagacttt gatctctttt ctaaaaaact agccagtgaa attttaaaaa
      241 ctttaggaaa tgataatcct actcaagctc ctgttttaat catcttgcct aaagggattg
      301 attgtttgat ttcatttttt ggagtggcac tcagtggaaa tttttataca cttttagatg
      361 aaaaaagtcc taaagaaaga gtagaaaaag tcatagaagt tttaaagcct aaacttttta
      421 tcacttcaaa ggacttaaat tttaacttag atttacctac gctttataca caagactttg
      481 aaagttttaa tatagatgag agtttaataa agcatgccaa agaaaaacat atagatacta
      541 atttactcta tgttttcttt acaagtggga gcacaggcat tcctaaagga gtaagcatag
      601 ctcataagag tgtgattgat tatacttttt gggtgtgtga gacttttaaa tttgatgaga
      661 atgaaatttt agccaatcaa gcgccatttt attttgacaa tagcatttta gatatttttt
      721 caagtgtaaa atcaggagcg actttacacc ttttacctaa tcatcttttt gcctttccaa
      781 ataaaatttt agaatgcctt gaaaaagaaa aagtaagcac tatattttgg gtaccttcgg
      841 tgctgattta ttttgcaaat actgaagctt tgaataattt tagtttaaac gccttaaaaa
      901 agatgctttt ttgtggtgaa atcatgccca ataaacagct caatatttgg cgtaaacact
      961 tacccaatgc cttatttgcc aacctttatg gcccaacaga aatcactgat gtatgttctt
     1021 tttatatcat caatcgcact tttaaagatg aagaactttt accgatagga aaagcgtgca
     1081 aaaacacaga acttttagtt tttgatgaaa atatgaattt cataagtcct aaacaaatag
     1141 gtgttaaagg ggagcttttc gtgcgtggaa cttctttgtc tttagggtat tataatgaca
     1201 aagaaaaaac caaacaagct tttattcaaa atcctttaca tgataattat ttagatttac
     1261 tctataaaac aggagatatc gtttcttata atgaatttgg agagctttta tgctacggaa
     1321 gagcagataa tcagataaaa tatatgggac atagaataga acttggagaa atagaaagcg
     1381 tgataaattc tcatgtgaat attaaaaaca gtgcttgtat ttttaaagaa gatattattt
     1441 gtttttatga aagtgaagaa gaaattaatt ttaaagattt tttgaaagat aaattacctt
     1501 cttatatgat cccaaaaaat tttattaaac tcgacaaatt taagcttaat caaaatggta
     1561 aaattgatag aaaggtttta aaagaacttg tttaaataaa tattttataa tttcaaaaaa
     1621 ctaaaggaga aaaaatgcaa gaaatcaaac aattttttat caatatagaa agaacagata
     1681 tcaatgagag tatggaaaat ctagtaagtg aagattttat cgatagtatc gatatcatgg
     1741 ctttggttgc cgaaatagaa aaattttata aaaaaccctt aaaagcagaa tttatcacac
     1801 ctgaaaattt tgaaagcttt gaaaatatca aaaaaatgct tgaaactgca atgaaagact
     1861 aatctttcct tgcaagttca agctgttctt ttaaagaact gatgatttca tttttagaaa
     1921 caataatttg tgctataaaa tccgccacat catcccaatc tttacttagc atatgggtta
     1981 aagtataatt ttgttcatat tcttcccaat tcacaggagt aaaaagagaa tttttatgcg
     2041 ggaaatattt gttttttacc cattcaagtg aagaagcaaa ataatccaca taagctttag
     2101 caatatcttt ttgcactgca aattttaatc ttttttcttt gctgccttca aattttcttc
     2161 ttgccataaa aagcaaagaa ttaagattat cctgctttaa atctttttga tttaatcttg
     2221 acataagctc cattcctaaa agattaaaac tttcattttt ggtttgtttt aaaacaaaac
     2281 tctcatccca ttcaagtcct aaatgataaa caaaatcctt aagtaaagtc cctcctacat
     2341 aatcctccct tagaagtctt actatcaaat tttcttctcc aaatacctca gcatgagttt
     2401 tgcaaatcca ttcatagtca aaaatatatt ttctaggatg atcttgcgga gcaaaatcag
     2461 cagaataata ccccatattg tttttatggt cttgagaaca atgtgagttt aaataaccca
     2521 aagtatctct aaaatacaca ataatataaa tttgagtaaa acctaactct ctcataatct
     2581 tttctaaaat ttctacatgt tttttggtag aaaaatccca aactataccc tcagctgaaa
     2641 aaataaattt tttatcttta tgtaaagcac tttcactttt aaaattttct atagctctaa
     2701 gaagtctttc atttgtgata tgacttaaaa cactctcttt ttttaaaata tcttcttttt
     2761 gaaccaattc taaaaccata tccaccaaag cccaatgcct atttgccact ctaagacttt
     2821 ttgggtaaat ataagctttt tgcaaaagct tttcttcgtt ttgcatcaag aagccttgtt
     2881 tttcttgatt tcctgtatta gtagttccta tatgtaaata tgctgtcatt ttatatcctt
     2941 tatctttatt ttaatttatc atctctaact caaatttatc ttctaaatcc ttaaacacaa
     3001 atactttatt cccacaagga taagagatag aattttcttg cataaaagat tttcttcctt
     3061 gtagtttttc aagcattaaa ggaagttctt ttctaaataa agccctatca gtcattctaa
     3121 gtccatgctc taaacttttt acaaatctac catctatatc attttcatcc tttattaaat
     3181 gtaaagttgc atcatatcct aattcctgat aacacttata aagttctatt ttattttgca
     3241 ctggcgcacc catatcttgt atactatgat agcttacaaa aatggtattt ttatttaaat
     3301 ttgattgaat ttgaagatgg tttgaattta aaactgctct gattaaataa ttttcatcac
     3361 caaaataata agaagaattc atatttctat tccagtattt atatacaaaa caataaagtc
     3421 tataaccact tccttcgaaa taaaattccc cttgattcat ttctcttcct aaaatgcacg
     3481 ccaaaaatgg caagcaaaca cctgaattat caatcacacc atccacatac caaggagcta
     3541 tttttgctat g
//
LOCUS       DARBAR010000136         3415 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.136, whole genome shotgun sequence.
ACCESSION   DARBAR010000136 DARBAR010000000
VERSION     DARBAR010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3415)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3415)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3415
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.136"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            605..2695
                     /locus_tag="SB815_001622"
     CDS             605..2695
                     /locus_tag="SB815_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HEG0907330.1"
                     /translation="MKIFKIIFLIISIFLSSSAFARVDDYINEANLIKDMLKQSIETY
                     KKGDNLGAKKLSEDAYFQHFENMEGSIGRNIGRKAITMERKFVNLRRMYKDEAPLTQI
                     NALIDSLYYDLDEVAPILQNGYRLKAEASDINYDKAKAEKSSLEANAKREADAEALIA
                     QMMGVDKKDLAQSSLTTQAPIPINNDTSKLTDDNASTDLQAAAAMDVRLQFILDNIST
                     KFSQAANAFKEKNYQTSKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLI
                     RQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSN
                     DIKLALDEILKNYDGFSASIVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSK
                     SVALIKASTDKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALII
                     VVAIVSYLVQSGNKNRLNIAYSALFTGVILSFVTAFGVSWLFKENAGQSRELIEGITM
                     LIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAET
                     VLFYQALLFDAKTSTDFGAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYII
                     FYMVFVFTGKGIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIG
                     ILITKQISKKGVKS"
     gene            2692..3231
                     /locus_tag="SB815_001623"
     CDS             2692..3231
                     /locus_tag="SB815_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HEG0907331.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
BASE COUNT         1270 a          488 c          554 g         1103 t
ORIGIN      
        1 ttaatataat ctaaaattat aattttaaat gagaaatcag gagcttgcta atgttactta
       61 acacgccttg cagggggata atagatacaa attttgaaag caaaagaatt agcataactt
      121 caactttaaa atttcaagaa aaaaagaaaa agtagaagct aaggctgaga aagaagaagc
      181 aaataaagac aatagcaatt ctacaaacac aaataccaat aaaaaagata aacttttgga
      241 tatatctgct tagtctaaaa tatactatag ctatatctcc ttaaagaata cgcaataaat
      301 gattttttga tttttattaa gcttttaaaa catcgaaaaa aggaaaaatt aaaaaacaca
      361 aaaacaatat cccaaagtcc atagcttaga agaagacctt gcgatactta aaaacaaccc
      421 atattaaatc acaaaaataa aatatattta aatatttatt aaaatacatt ttataattta
      481 ataaaaaaat attatcaaca taaaagctta ttttttagtt ctatttaaga tttttagtat
      541 tatactagcc attatttatt ttgataataa atattatttt tatcaaaaat caaggataat
      601 gataatgaaa atttttaaaa ttatattttt aattataagt atttttttat caagctcagc
      661 ttttgctagg gtagatgatt atattaatga agcaaatctt atcaaagata tgctaaaaca
      721 aagcatagaa acttataaaa agggcgataa tctaggcgcc aaaaagctta gcgaagatgc
      781 gtattttcaa cattttgaaa atatggaagg ctcaatagga agaaacatag gaagaaaagc
      841 tatcactatg gagcgtaaat ttgtaaattt gcgtcgcatg tataaagatg aagctccttt
      901 gacacaaatt aatgctttaa ttgatagtct ttattatgat cttgatgaag tagctccgat
      961 tttacaaaat ggatatcgtt taaaagcaga agcaagcgat ataaactatg ataaggctaa
     1021 agctgaaaaa tcaagcctag aagccaatgc caaacgcgaa gctgatgcag aagctttaat
     1081 cgcacaaatg atgggtgtag ataaaaaaga tttagcacaa agctctttaa ccacccaagc
     1141 tcctatacct ataaataatg atacaagcaa acttacagat gataatgcaa gcactgattt
     1201 acaagctgcc gctgcaatgg acgtaagatt gcaatttata ctagataata tctctaccaa
     1261 attttcacag gcagctaatg cttttaaaga aaaaaactac caaactagta aagatttttt
     1321 aaatgatgcc ttatttagtg attatcgcaa taccaaagta gaaattttag taaataaatt
     1381 taccaaagca ggaaacgatc aaaaaattca acaagccata cgcaccctta tacgccaaat
     1441 caacgatgca aaaatagatg aaaaaggctt aagagatggc ttagataaca tagaagaaca
     1501 aatttttgat gttttcttac aaattccaaa ttcagaactt tcaagtttgc aaatttcagg
     1561 ctttaatgat gaaacaaaag gcaaagatta tgccaaagtt tctaatgata tcaaacttgc
     1621 tttagatgaa attttaaaaa attatgatgg gtttagtgct tctatagtag atgatttaca
     1681 aggaatttat ctagatattt ttgaagcaag cggtatggaa aataaaatcg gtgctgtaga
     1741 tagcggctta aaacttaaaa tagaaagttt attttccaaa agcgtagctc ttatcaaagc
     1801 aagtacagat aaaaaagagc ttgaagctac ttttaatgac ttagaacaac tcatagccag
     1861 cagcgtggat aaaattcaag attctactcc ttattcgctg tttatatggg ctttaggtat
     1921 tattttgcgt gaaggcttgg aagctttgat tatcgttgta gccattgttt cttatcttgt
     1981 gcaaagtggc aacaaaaatc gtttaaatat cgcctatagt gctcttttta caggagtaat
     2041 tttaagtttt gttaccgctt ttggagtttc ttggctattt aaagaaaatg caggacaaag
     2101 tagagagctt atagagggta ttaccatgct tatagccgta ttactactct tttatgtggg
     2161 cttttggcta ctttcaaacg cacaaaataa aaaatggaca agctttatca aacaaggtgc
     2221 tatagatgct atatcaaaca atagtgcaaa aaccctttgg attaccgtat ttttagctgt
     2281 ttatagagaa ggtgcagaaa ctgtgctttt ttatcaagcc ttgctttttg atgctaaaac
     2341 aagcactgat tttggtgctg tttttggcgg acttggactt ggaattttaa tacttattgt
     2401 tttatatttt cttttaaaag caggagccat tcgcatacct gtaaaacaat ttttctatat
     2461 cacttcttac attatttttt acatggtttt tgtttttaca ggcaaaggca tagccgaact
     2521 catagaagga aaagtcatca ttcctagtct tatacctatg aattttgaac cgattttatg
     2581 gcttggaatt tatccttact atgaaacttt aatccctcaa tttatagttt taattatgct
     2641 aattattggc attttaataa caaaacaaat ttcaaaaaaa ggagtaaaat catgataaaa
     2701 aaagttttat cagtagttgc tgcagctgcg gttattagta caaatttatt tgcaggcgaa
     2761 gtgccgatcg gcgatccaaa agaacttaat ggcatggaaa tagccgctgt ttatttacaa
     2821 cctattgaaa tggagccaag aggtattgat ttagctgcat ctttagcaga tattcaccta
     2881 gaagctgaca ttcacgcact taaaaacaat ccaaatggtt ttccagaagg tttttggatg
     2941 ccttatttaa ctatagctta tgaacttaaa aataccgaca caggtgcaat taaacgtgga
     3001 actttgatgc ctatggtggc tgatgatggt cctcactatg gtgcaaatat tgctatggaa
     3061 aaagataaaa aaggtggctt tggcgtagga aattatgaac ttacttttta tatctcaaat
     3121 ccagaaaaac aaggttttgg acgccatgtt gatgaagaaa caggtgtggg taagtggttt
     3181 gaacctttta aagtagatta taaattcaaa tacacaggca cgccaaaata attttacgct
     3241 cggattttcc gagtgtttga atatttttat ttttatttga aaaattaaaa taacaatgtt
     3301 taaagagtaa attatgagta tatattttgt gcattttctt atcagtgttt taccgctaag
     3361 tattttaatg gcctttatca ctcctaataa aaaatatatt tttaaaagtt ttttc
//
LOCUS       DARBAR010000137         3409 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.137, whole genome shotgun sequence.
ACCESSION   DARBAR010000137 DARBAR010000000
VERSION     DARBAR010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3409
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.137"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..71
                     /locus_tag="SB815_001624"
     CDS             <1..71
                     /locus_tag="SB815_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEG0907332.1"
                     /translation="LYIPYKNKSFYLIKIIFKRTNQ"
     gene            68..1654
                     /gene="yidC"
                     /locus_tag="SB815_001625"
     CDS             68..1654
                     /gene="yidC"
                     /locus_tag="SB815_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEG0907333.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVIYDYFFIPKQPLKIEQNIT
                     QKNQQNTSINNTPNIQNATTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DRKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKTSGA"
     gene            1658..2476
                     /locus_tag="SB815_001626"
     CDS             1658..2476
                     /locus_tag="SB815_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HEG0907334.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIEIKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQSVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            2469..>3409
                     /gene="mnmE"
                     /locus_tag="SB815_001627"
     CDS             2469..>3409
                     /gene="mnmE"
                     /locus_tag="SB815_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEG0907335.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESK
                     DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEK"
BASE COUNT         1234 a          468 c          606 g         1101 t
ORIGIN      
        1 ttttatatat accttataaa aataaaagtt tttatcttat aaaaatcatc tttaaaagga
       61 caaatcagtg aataattcaa ataatatttt tcagcaaaag cgtatacttt tagctgttgt
      121 gatttctttt ttattttttg ttatttatga ttattttttc attccaaagc aacctttaaa
      181 aatagaacaa aacattacac aaaaaaatca acaaaacaca agcataaata acactcctaa
      241 tatacaaaat gccaccacaa atactccaag tgcggcttta gtttcgcaag atagtgtgat
      301 atctaaggtt caaagcaagc attttgaagc acaaattgac tcttttggta gaatttctgc
      361 tttttattta aaagatagaa aataccaaaa tgagaaagga gaatttataa atcttgttag
      421 caaggaaaat agtccttatc ctttagaaat gcgttttagt gatccaagta ttaactcaga
      481 ggcttttaaa attccttatg ttgctaacgc tagcaatctt tttgttgatg aaaatggaag
      541 tcaagtttta aaactcactc aaaatctttc tggattgaaa atcgaaaaag atattacttt
      601 ttatccaaaa ggaaattatg agatagaagt taaactcagc aagaatgcaa attattttat
      661 aagtccagga tatcgtccaa atattgccgt agatagttat acagttcatg gtgctttggt
      721 aatggataat aaagaaacca tcgaaactta taaagatgga gatgtagaaa aggatgaaag
      781 tgctaataat gtcgtaatga cttcggcttt tgatagatac tatgcaactt tcttttataa
      841 ttttgataaa cctttaaatg tggcaatcag caaggatgct aatcaaaacc ctatagtttt
      901 tgcttatagt gataatgaat ttaaagcagg gggctatata ggctctaaag aacatgtgat
      961 tttaagaagt atagatccac gccttgaagc agttgttgaa tatggttggt ttacttttat
     1021 tgctaagcct atgtttgagt ttttgaattt cttgcatcag tatataggaa attggggttg
     1081 ggctatcgtt gtgatgactt taattgtgcg tattatttta ttcccgctaa cttataagtc
     1141 tatgatttct atgaataaac ttaaagatct tgctcctaaa atgaaagata ttagagagcg
     1201 ttataaaggc gatccacaaa aaatgaatat gcacatgatg gagctttata aaaaacatgg
     1261 tgcaaatcct atgagtggtt gtttgcctat acttttacaa attcctattt tctttgctat
     1321 ttatcgcgtt ttgcttaatg ctattgagct aaaagcagct ccttgggcgt tttggataca
     1381 tgatttatcg gtaatggatc cttattttat tttgcctatt ttaatgggtg caacgatgtt
     1441 tttacaacag cttattacac ctatgactat acaagatcct atgcaagcta agattatgaa
     1501 atttttacca gtgattttta cttttttctt tatcactttc ccagcaggac ttacgcttta
     1561 ttggtttgta aataaccttt gttctttggt tcaacaatgg gttatcaata aaatatttgc
     1621 taaagaacat cacaaaaaaa caagcggagc atgaaaaatg aaaatcgaag ccattgatct
     1681 tcaaagtgcc ttaacagaag cttcaagaag tttagaatgt tctgtgatgg acttagaata
     1741 tgagattatt cagcatccaa gaaaaggttt ttttggattt ggaagaaaaa aggcaattat
     1801 agaggctaaa gcaaaaaaaa ggattttgaa aaaaaatcct aaaaaagaat ttacaagttc
     1861 aaaaaatcac aaaccagaaa cacatgagcc aaaacaagaa aacaagattg aaataaaaaa
     1921 tgaaaaaaat aaaagtcaaa aagaaaaata cacagtaaaa agtgatgaaa tttttgatag
     1981 ttttcatcga gaaagcaaag gagtgcgtaa tactcaggat attttagatg agattcgtat
     2041 tcagcttgta aaacttttag aaagctccca gtttaaaata gagcttagtg aacttagaat
     2101 gtatgatgaa gattgtgttt tgattcgatt ggatggggaa gatgctgctt tgatgatagg
     2161 caaagaagca catcgttaca aggctatttc ttatcttttg cataattgga tcaatttaaa
     2221 atataatctt ttagtgcgcc ttgagatcgc tcaattttta gaaaatcaaa ttcaaggtat
     2281 gcagctttat ttacaaagcg tgattgaaaa aattaaaatt catggacgcg gacaaaccaa
     2341 acctttagat ggggttttga taaaaatcgc tttagagcag ttaagagctg aatttccaga
     2401 taagtatgta ggaattaagc aaaataatga tcaaagattt gttgtaataa acgacttttt
     2461 caaaaaagat gagtgatact atagcggcta ttgccacagc tcatggtgtg ggttcgattt
     2521 ctattgtaag attaagcggt gaaagggctt tagaatttgc cttaaagctt agccacaaaa
     2581 ccaaacttac cccgcgccat gctactttta caaaactttt taatcaaaat aatgaaatta
     2641 tcgatgaagc tataatgata tattttaaag ccccttatag ttttacaggg gaagatatag
     2701 tagagtttca aactcatgga ggatttagtg tgagtgaagt tttactcgaa gaacttgtga
     2761 gtttaggagc aagacttgct ttagcagggg aatttagcaa aagagcgtgt ttaaatggca
     2821 aaatgactcc tttaaaagct ttaaatatac aagatctcat actttcaaaa tctgcacttg
     2881 cagctaaaat tatagcacgc aacatgcaag gaaacttagg agaactttta gaaaaaattc
     2941 gcacagattt ggttaaaacc ttggcttttg tagaaactag cattgattat gctgatgatg
     3001 atttaccttc tgatttatta gagcaaattt ctactatgtg tgaagaaaat tctaaaattt
     3061 taaaagaaat ttatacgctt tctcaaagca aaaaaggact catagaaggt tttaaaatcg
     3121 ctattgtagg taagccaaat gtaggcaaat cttcgctttt aaatgccttg ctttcttatg
     3181 aaagagctat tgtttcagat atagcaggca ccactcgtga tactatagaa gagaacttta
     3241 aattaggaac gcatttatta cgcattatag atacagcggg tattagggaa agtaaagatg
     3301 ttatagaaca aatcggcgta gctttaagta aaaaaagttt agaagatgca gatattattt
     3361 tggcagtctt tgatgcttca agagtgcaag ataaagaaga tgagaaaat
//
LOCUS       DARBAR010000138         3388 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.138, whole genome shotgun sequence.
ACCESSION   DARBAR010000138 DARBAR010000000
VERSION     DARBAR010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3388)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3388)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3388
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.138"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..1124)
                     /locus_tag="SB815_001628"
     CDS             complement(<1..1124)
                     /locus_tag="SB815_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG0907336.1"
                     /translation="MNLKQISAIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTL
                     NIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKN
                     LELQEDNIIALSRKNLYKGEWIKACGWWPDYVWRIFNKNFTRFNDNLVHESLVLPSNA
                     KKIYLKNGLRHYAFRDISHLIDKMQYYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYF
                     LKNGFLYGYKGFIISVCNALGTFFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLAFLPNEVLIADDGSKEDTARLIEEYQKDFPCPLKHIWQEDEGFRAAKSRNNAI
                     KASKSEYIILIDGDMILEKDFVKNHLEFAKRKVILQGSRV"
     gene            complement(1121..2008)
                     /gene="htrB"
                     /locus_tag="SB815_001629"
     CDS             complement(1121..2008)
                     /gene="htrB"
                     /locus_tag="SB815_001629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HEG0907337.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARIAFYLNKK
                     HRKIINTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENFLIDALALNRPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCVENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKVKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNKEIYKDAK"
     gene            complement(1998..3026)
                     /gene="waaC"
                     /locus_tag="SB815_001630"
     CDS             complement(1998..3026)
                     /gene="waaC"
                     /locus_tag="SB815_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HEG0907338.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLINKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQTKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKMMNLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            3092..>3388
                     /locus_tag="SB815_001631"
     CDS             3092..>3388
                     /locus_tag="SB815_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEG0907339.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIENFFNFIENYE"
BASE COUNT         1102 a          496 c          483 g         1307 t
ORIGIN      
        1 attactcttg aaccttgtaa aattactttg cgttttgcaa attctaaatg attttttaca
       61 aagtcttttt ctaaaatcat atcaccatca attaaaatta tatattcact tttagaagct
      121 ttaatagcat tatttctact ttttgcagca cgaaaaccct catcttcttg ccaaatgtgt
      181 tttaaagggc aaggaaaatc tttttgatat tcttcaataa gccttgctgt atcttctttg
      241 ctaccatcat ctgcgattaa aacttcattg ggtaaaaagg ctagattttt aacactatca
      301 agcactaatt taaggcgttc tttttgatta taagttgtta ttattaaagc gcaagttttt
      361 ggcttttgct tttgaagttc atataatttc atgtatttaa aaaaagtccc taaggcattg
      421 caaacgctaa ttataaaacc cttataacca tataaaaagc cattttttaa aaaataattt
      481 ctaaaaaaag tccaaaaagc tcttaaattt gcttttaaaa caccactttt tttgtgtata
      541 ttttgttttg cccaaaggct tgagtagtac tgcattttgt caattaggtg ggaaatatct
      601 ctaaaagcat aatgccttaa tccattttta agataaattt ttttagcatt acttggcaaa
      661 acaaggcttt catgtactaa attatcatta aaacgagtga aatttttatt aaaaattctc
      721 caaacataat caggccacca accacatgcc tttatccatt cgcctttata gagattttta
      781 cgactaagtg cgatgatatt atcttcttga agttctaaat ttttaagctc tttaatacac
      841 tcattttcaa gcacttcatc agcatcaatg cttaaaatcc aatcattttt tgcataactt
      901 aaagcaaggt tttttaaagc tccaaaacct ataaaagcac tgtggtaaat gtgcaaatta
      961 gcaaaatctt ttttaaattc attagctata tttagggtat tatcactact ttcattgtta
     1021 agtaaaataa tttcatcaaa atcttttaaa gaatttaaac attcaagcaa ggtttgtttt
     1081 gcatttttta cgatgataat agcacttatt tgctttagat tcattttgca tccttgtaaa
     1141 tttccttatt ataacttgca aagcgtctat gaaaaaaaaa gtattcccaa ggtctttttt
     1201 taatcatttc ttcgcaactt tgtgcttgat aaagtgtcag ttcttctaag cttgcatttt
     1261 gagaatcttt tactttaaaa aactctatgc aaaatttacc atcttcttta taggcataaa
     1321 cagggatgat caaagcatta cttctttgtg cgataaggct tgctcccatt tgataattca
     1381 cttctttgtt aaaaaatttt aatcttacgc tttcgttttc tacacagtct tgatcagtta
     1441 aaattcccaa agttctccct ttttttagag cgcttagcat ttgtcttatg ccgccttttt
     1501 tgtcgataag ttctatgtca aattgggtgc gactttggct taaaatttca tacataattt
     1561 cactttttaa ctttttccct actatagaaa tcgcaccata tttagctgca taagcaaggc
     1621 ttaaaatttc ccagtttcca tagtgtgcag ttgtgaagat aataggacga tttaaagcta
     1681 gagcatctat aagaaaattt tcattgatga aatttacttt attgagaatt ttttctttgg
     1741 tggtgttttg attttgcaaa caatcaatcc caaattgagc aaaattttca taaattttta
     1801 aagacaattt atcgcgttct ttttgagtgt attgaggaaa acagatttgc aaatttgtat
     1861 tgatgatttt gcggtgtttt ttgttaagat aaaaagcgat tcttgctaca atcaaagcta
     1921 aaaaatgcaa gatacactca ggcataaaag taacaaaaaa tttcaaaata taataaagac
     1981 taagatatat tctatcacta tttttcatta agtaagcctt tggcaagttt gaagatatct
     2041 tcttcttcta tacgcgtgat acaaaaatca cttttatcga tatgcttggc attttggatt
     2101 tttttacctg catcaatgat tttattgata tgagtttgaa aagcattgcg gtagcttggt
     2161 gttgcaccaa aaatcgtaat agatgcctta tttaaagcaa aagccaaatg tgttgggccg
     2221 ctatcatttc ctatgattaa attcatcatt tttgtaaaag ccattagttc ttcaagattg
     2281 aattttggcg ctaattctat atgtgtttca tcaataccac taagatttaa aacctcttta
     2341 gcaaattcgt attcttttac atttccccaa gcgagccaaa tttttgtttg ttgaaattca
     2401 ttgattaaaa gcttacaaag tatagcaagt ttggttttag gatagatttt attttctaca
     2461 cttgagccca catgtatgag tatgtttttt tcgtttttgt cgagtttgag tttattattt
     2521 aagagttgtt ttaaattttc atctacgcta aaaatatctt gtttaaaggc taaatttttg
     2581 acattaaaat cagtatttaa cataaaggag gtaagactta agtatcttac aaatacattt
     2641 tcattgtaat ctaactcaag tttttggttg tagaaattat gagcaaaact ttctttaaga
     2701 ctatttttat caaaaccaaa attatttcta cttaaaattc gacttacaat agcagatttt
     2761 atgagccctt gtagatctat tactgcatta tagttgtttt ttcttgcttt aagaagaatt
     2821 tttaggcttt ttaaaatttt tttgtctttt aagggcaggg catagagttt gtttattaaa
     2881 ggatggtttt taagtatgcc ttcaaatttt tcatctacaa accaatgaat ttctatatct
     2941 tttttaaaat ttttgataaa ttgcaaaacc acggcacttt gtataatatc accaagtgct
     3001 gacaaacgaa caattgctat tttcattaaa agcctaatat tttaaaattt ttgctatgat
     3061 tttagcgaaa ttatttaaaa aaaggttaaa aatggcaaaa aatgaaggtt atatttgtgt
     3121 ttttgattgt gagagtgtgc cagatgttga gcttatccgc aaaactttgg gttttgaagg
     3181 aagtgattta gaggtaagtt taaaagcact tcagtggcaa aaagaacaaa gtgggagtga
     3241 gtttttgcct ttgccttatc ataaaattat cagtatttgt gcggttttaa gtgataattt
     3301 tggaaaattt atcaaagtga ataaaattga tggacaaaat gaaaaagaaa tgattgagaa
     3361 ttttttcaat tttatagaaa attatgag
//
LOCUS       DARBAR010000139         3281 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.139, whole genome shotgun sequence.
ACCESSION   DARBAR010000139 DARBAR010000000
VERSION     DARBAR010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3281
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.139"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..754
                     /locus_tag="SB815_001632"
     CDS             <1..754
                     /locus_tag="SB815_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HEG0907340.1"
                     /translation="DKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSADLASN
                     KILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVMISLV
                     HDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNHLSKE
                     DEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNGGFMG
                     DFSKKYILYSPLNYKSSPFICVSSRNFLQDFL"
     gene            794..1561
                     /locus_tag="SB815_001633"
     CDS             794..1561
                     /locus_tag="SB815_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907341.1"
                     /translation="MKMRYCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDL
                     NQNVANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDK
                     EFSTLFAKNLIQSLKLNWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAK
                     MYAKFTDYVVVVNLQDFYVNITNYFIITSKEGVANVNFKIISTSNGKILVAKNAKLNL
                     TLKNQDAKQNYQDIINQMPKMLADVIKNQIFHLKLLN"
     gene            complement(1565..3268)
                     /locus_tag="SB815_001634"
     CDS             complement(1565..3268)
                     /locus_tag="SB815_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907342.1"
                     /translation="MNLSEQFLKESPKFALEFATLSSYKLSLFQKALYYAQELFSLNP
                     TSFNGLMLAKSYIENLRLDEALNLLQTLLTRKDDLEDELKLELAFIYKLSNKLEESEQ
                     IFKELLSKDMYNLNLWKNYAEIYFKHDFTKALNAHEHLCHFMQDLIDKLQKGIIAEQT
                     NLNLVKLEDRLHSKTKENLTISKIEDFLTHQILPQKAYLLFKLFRISDSLELFQSLQE
                     ANQHHAQFWQNYAKVLEFNSNYQEAYHAYKKCLSLDSHATYQFDLAYLLMRMGVDDNF
                     EEGKKYYESRLFYAHNETFSTYHYNESLKAFNKFGVDAFKNKEVLVFCEQGFGDTIMY
                     ARCLEKLCKIASKVLFAPQSAMYEMFKNQIKFLNQNDDIFKNVKVLKNLPTNFDYAIP
                     ICSLPFFIDIKLDEILRLKTPILPQKKPHNQRKKLGIFYATPNAENSDLLRNVKFEFL
                     FDVLKDLDYEIISFQMQLKEELPKVIEDRSKLIKNWNDTLNYLYDIDCMLSIDSAIAH
                     LSLAMDIPTIVLLHPRFDWRWGKFENPKSYFWPKAKCFIIKEQEETKRNLQKLIKDIL
                     N"
BASE COUNT         1214 a          427 c          469 g         1171 t
ORIGIN      
        1 tgataaattt ttagaaattg ctataaatgc tagcaatcaa gcttctaaag ctattttaga
       61 agagagaaaa aatttcaaaa cttgggaaaa agaagataaa agcccgctta catcagcaga
      121 tcttgcttct aataaaattc taaatgatat tttgggttct acggatatta aaattctatc
      181 agaagaaaaa ttacttagca aagaagagtg tgaagaatta aaaacttttt ggcttatcga
      241 tcctcttgat ggaacaagtg gttttttaaa aggcagtgat gaattttgcg ttatgataag
      301 tttggttcat gacaatcgcc ctgttttatc actcatacaa aatccatcaa aaggtgatat
      361 attctatgct catgcaaaaa ccaaggttta taaaaacgat aaacctttgc aaattgacca
      421 gcaagaatac gagaaaaata aatataaagc cttattgagt gttaatcatc ttagcaaaga
      481 agatgaagac tttgcaaaag agcatcaatt agaagctatt aatataggct ctggattgaa
      541 attttgtgct attttagagg ctagggcagg agtttataaa agatttgaaa agcttaatat
      601 ttgggatatt gtagcaggag attttttgat taatcaaaat ggaggattta tgggagattt
      661 ttctaaaaaa tacattttat atagcccttt aaattataaa tccagtcctt ttatttgtgt
      721 ttcatctagg aattttttac aagatttttt ataaaataaa gagtataatt ttatatttaa
      781 atagtttata aggatgaaga tgaggtattg tttcattttg tttttaagtt tagttttaag
      841 ttctaatctt ttagcgaata atttttctca gaaaaaagtt attaaaattg aaaaaagcgc
      901 agatagtttt gaagtaatag atctaaatca aaatgttgca aatccaaatc taaatcaaca
      961 aaaagcattg tttgatagtt ctaccttgat tgaaaaaaaa tcgcaaatca ccaaagataa
     1021 agatattgat tttgccattg tattaacttc taggaaaaat tttggttatt ttttagatgg
     1081 ttttagggtg agtgataagg aattttctac attatttgct aaaaatttga ttcaaagttt
     1141 aaagcttaat tgggttaatt ctgctgcaaa tggtatttat caaagtccta aaactttgtc
     1201 atattttagc cctaaggatg caaaacttat aaatgtaagt ccttttttaa cacaagaaaa
     1261 agataaggct aaaatgtatg ccaaatttac agattatgtt gtggtggtaa atttgcaaga
     1321 tttttatgta aatattacaa attattttat cataactagt aaagagggtg tggctaatgt
     1381 taattttaaa atcatttcta caagcaatgg aaaaattctt gtagcaaaaa atgcaaaatt
     1441 aaatttgaca ttaaaaaatc aagatgcaaa gcaaaattat caagatatta taaaccaaat
     1501 gccaaaaatg ctagctgatg ttatcaaaaa ccaaattttc cacctaaagc tcttaaacta
     1561 agctttagtt taaaatatct ttaatcagtt tttgcaaatt tctttttgtt tcttcttgtt
     1621 cttttatgat aaaacatttt gcttttggcc aaaaataact tttaggattt tcaaattttc
     1681 cccaacgcca atcaaaccta ggatgtaaaa gaactatagt aggaatatcc atagctaaac
     1741 ttaaatgcgc tatagcacta tcaatactaa gcatacagtc aatatcatat aaataattta
     1801 gagtatcatt ccaatttttt ataagcttgc ttctatcttc tattacctta ggcaattctt
     1861 cttttaattg catttgaaaa gaaatgatct cataatctaa gtcttttaat acatcaaata
     1921 aaaattcaaa ttttacattt cttaataaat cagaattttc agcattagga gtagcataaa
     1981 aaataccaag tttttttctt tgattatgcg gttttttctg tggcaatata ggtgttttta
     2041 atcgtaaaat ctcatcaagc ttaatatcaa taaaaaaagg caaagaacaa ataggaatag
     2101 cataatcaaa atttgtaggt agatttttta aaacctttac atttttaaaa atatcatcat
     2161 tttgatttaa aaatttgatt tgatttttaa acatttcata catggcactt tgaggagcaa
     2221 ataaaacctt tgaagcgatt ttgcaaagtt tttctaagca tcttgcatac attatagtat
     2281 cgccaaagcc ttgctcgcaa aatactaaaa cttctttatt tttaaaagca tcaacgccaa
     2341 atttattaaa agcttttagg ctttcattat aatgataagt agaaaaagtt tcattatgag
     2401 cataaaataa tctgctttca taatatttct tgccctcttc aaaattatca tccactccca
     2461 tacgcatcaa aagataagcc aaatcaaatt gataggttgc atgagaatcc aagctaagac
     2521 attttttata agcatgataa gcttcttgat agtttgagtt aaattctaat accttagcat
     2581 agttttgcca aaactgtgca tggtgttgat tggcttcttg tagtgattga aaaagttcta
     2641 aagaatcaga tattctaaaa agcttaaaaa gcaagtatgc tttttggggt aaaatttgat
     2701 gagttaaaaa atcttctatt ttagaaatgg taagattttc tttggtttta ctatgaagcc
     2761 tatcttcgag tttgactaaa ttaagattgg tttgttcagc aatgattcct ttttgtagtt
     2821 tatcaatcaa atcttgcata aaatgacaca agtgctcatg tgcatttaat gccttagtaa
     2881 aatcatgttt aaaataaatt tctgcataat ttttccatag attaagatta tacatatctt
     2941 tagaaagcaa ttctttgaaa atttgttcag attcttctag tttattactc agtttataaa
     3001 taaaagccaa ttctaactta agttcatcct ctaaatcatc tttgcgagtt aaaagtgttt
     3061 gtaataaatt caaggcttca tcaagtctta aattttcaat atagctttta gcaagcataa
     3121 gaccattaaa acttgtagga tttaaagaaa aaagctcttg agcataatat aaagcttttt
     3181 gaaaaagaga aagtttataa gaagaaagcg tagcaaattc taaagcaaat tttggacttt
     3241 cttttaaaaa ttgctcactc aagttcaaac atttttcata a
//
LOCUS       DARBAR010000140         3156 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.140, whole genome shotgun sequence.
ACCESSION   DARBAR010000140 DARBAR010000000
VERSION     DARBAR010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3156
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.140"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            47..745
                     /locus_tag="SB815_001635"
     CDS             47..745
                     /locus_tag="SB815_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG0907343.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNEIIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANAKAISQPKKDTNMQQPIMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIY
                     PRQARKMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYE
                     KTFHIKIPLVYKLS"
     gene            complement(837..1274)
                     /locus_tag="SB815_001636"
     CDS             complement(837..1274)
                     /locus_tag="SB815_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEG0907344.1"
                     /translation="MKKDSYHKITSKLIQEFDLLAVEDLQIKNMCKRAKLKNIKAKSG
                     LNKSILNTSFYQFSQYLEYKAKHNGKFFIKVNPQYTSKTCSVCGNIKKNLMFKDRVYL
                     CEKCGNTLHRDINAANNILKRGLKSFGLGISLEDYKLKAFRIS"
     gene            complement(1395..1658)
                     /locus_tag="SB815_001637"
     CDS             complement(1395..1658)
                     /locus_tag="SB815_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEG0907345.1"
                     /translation="MNTFFKMRYHRDLPNTYKFNQITIIKNHNKYYLAFSIIYDESNV
                     SLMSSKDFDIKKAVDIDLNINEITLSSGELIATNSKLLSRAEY"
     gene            complement(2087..2179)
                     /locus_tag="SB815_001638"
     CDS             complement(2087..2179)
                     /locus_tag="SB815_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907346.1"
                     /translation="MLETLKKYAENQGIEDNYPKKIYNQKEKKP"
BASE COUNT         1220 a          527 c          338 g         1071 t
ORIGIN      
        1 aataaagata tttaaatcaa aaaataaaat cataacggag taaaagatga aaacatttat
       61 aagcaatcat aaaaaccaat cttcttttat cactttattt gtttttacac ctttattttt
      121 tgtttttctt tattctaaag attttttaca catacaaccc aatgaaatta ttaaagaaaa
      181 taaatttaat atggcaatca aacattttgt acaaaattcc tccgatatga aaccgacaca
      241 acccacacaa actatacaag agccttcgaa tgtgcaaccc aaagaacctg tgcaagaaat
      301 aaaaaaaata aaaccgagaa aagaaaaacc tatcgctaaa cctaaaaaaa taatccctcc
      361 agcaaatgca aaggcaataa gtcaacccaa aaaagataca aacatgcagc aaccaatcat
      421 gcagcaacaa actccacaag ccagctctta ccaaagcgta tctttaacta gtaatagtga
      481 gcttttaaaa gaaataaaat cagcaatcga tgaagcccta atctacccta gacaagctag
      541 aaaaatgcgt atgagtgggg aggttcttgt agaatttacc tggacaaaag aaaagaaatt
      601 agaaaattta aaaatactta agccttcaaa atatgatttt ctaaataaaa gtgctttaga
      661 aactatacgc atagcttcta aaaaatttcc acaatatgaa aaaacttttc atataaaaat
      721 accattggta tataaattaa gctaaatctt tcacaatata ctctattttt aatgcaaatc
      781 actccagctt tgctaacgct tagaagtaga agcttcctag ctaaagctaa ctagtattag
      841 ctaattcgaa aggctttgag tttatagtcc tcaaggctaa ttcctaaccc aaacgacttt
      901 aatccacgct ttaagatatt atttgcagca ttaatatctc tatgtaaagt gttgccacat
      961 ttttcacaaa gatacactct atctttaaac ataagatttt ttttgatatt tccacataca
     1021 ctacaagttt tgcttgtata ttgtggattg acttttataa agaatttgcc attatgcttt
     1081 gctttatact ctagatattg agagaattga tagaatgaag tattaagaat agatttattt
     1141 aaaccacttt tagcttttat attctttaat ttagctcttt tacacatatt cttaatttgc
     1201 aaatcttcaa ctgctagcaa gtcaaattct tgtatgagtt ttgaagttat cttgtgataa
     1261 ctatcctttt tgattttgaa cttttttcat agattttatt taattttaat tgtgtttttt
     1321 tgaaattatg gcttaacttt gttttctcct tttttgtttt taatattctc ctgctttgtt
     1381 ttctttgcaa tcttttaata ttcagctcta ctaagtagct ttgagttagt agctattaac
     1441 tctccactgc ttaaggtaat ctcattgata tttaaatcaa tgtcaactgc ttttttaata
     1501 tcaaaatctt tgctagacat taaagaaaca ttcgattcat cataaatgat actaaaagct
     1561 aaatagtatt tattgtgatt tttgataata gtgatttgat taaacttata agtatttggt
     1621 aaatctctgt gataacgcat tttaaaaaat gtattcataa gtctaaatat cttaaactta
     1681 gtagtatcac tatctttgat tttgtaggct tgattattcc aattaaagct ttgctttgca
     1741 aatttagagt ttttaaattt gagaaagcct ttgtttttat ctctaattgc ttgctctaag
     1801 gcacgagaag attaatcctt gcttgttggg ttacaacact tttatagctt aattctcttg
     1861 cttttataag gctagtttta ttgattatct atcttacttg cctttaaata actcctatct
     1921 tttttatcta aattcttatt tttatcccac tctcttgctg taaatttaaa caaatattat
     1981 aggcttgata tagatgaaac attgatgatt aataagcttt tgttgttctt tgtttaggta
     2041 gaattctata tttaaaacct ttggttattt gcattgcttt gttccattag ggcttttttt
     2101 ctttttggtt atatattttt ttagggtaat tatcttctat gccttgattt tctgcatatt
     2161 ttttaagagt ttctagcatt attccgcata ggtattctat aaaaaattac tgattatgtc
     2221 aaatacctaa ctagagccgt acaactaaca ctgtaagcaa ttcatctccc acttaagaag
     2281 tgagagtttt attgaataaa aaaagataaa tttaaagcaa gtaatctttt tttagacaac
     2341 actaaaccct tgcatgtatt tacagcaata tttatttcat cataaacaac ccccaaccca
     2401 taaaaccttc aataaacact ataaaataaa agtatttgta aagaacaagc aaacaataaa
     2461 tctcaatcac ccagacaaaa acaatctcaa ccgacccata aagcaataaa tcaagcaagc
     2521 ataattaatt taattgatta aactaataaa tttaatttat aagattaaca ataaaaaacc
     2581 ataaattaac caagctaatc ccacccaaac ccaaacaagc cataaattac acacactttt
     2641 ttacaaacat caattaaata gcaagactat cgataataaa aaatttatct caagtataac
     2701 attcattctc gccaacaaga atagacaatc atagtctatc caccctaacc caacattaac
     2761 ccctaaccca actaagaagt gtataacaac cccaacccat aaacctcaat aaacactata
     2821 aaataaactt gagtgattaa aaatccaacc caattattga acaaacccaa cctacataat
     2881 aaaatataaa ctagacatat aaagaacaat tgacacataa aaatagattg aataaataaa
     2941 cctatacaag taaacataaa gattaattat tgatacaaaa gattcaataa ataaataaaa
     3001 agaataattg agatataaaa acatataaac taaacaactc aaacaaccat taaatcaacc
     3061 caagctaatt aaacctataa acataaaaaa ataattaaat ataaaaacaa cgattgacgt
     3121 ataaaaacta agattttaaa tctataagaa taagat
//
LOCUS       DARBAR010000141         3146 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.141, whole genome shotgun sequence.
ACCESSION   DARBAR010000141 DARBAR010000000
VERSION     DARBAR010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3146)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3146)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3146
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.141"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            109..756
                     /locus_tag="SB815_001639"
     CDS             109..756
                     /locus_tag="SB815_001639"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEG0907347.1"
                     /translation="MKSSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYNFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(778..2067)
                     /gene="cetZ"
                     /locus_tag="SB815_001640"
     CDS             complement(778..2067)
                     /gene="cetZ"
                     /locus_tag="SB815_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HEG0907348.1"
                     /translation="MFGAKKNNTKIIEQLEKKCNGLGDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGHVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLCLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(2148..2774)
                     /locus_tag="SB815_001641"
     CDS             complement(2148..2774)
                     /locus_tag="SB815_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEG0907349.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIVAMGFKMIIVGLKDIFNL"
     gene            complement(2789..3115)
                     /locus_tag="SB815_001642"
     CDS             complement(2789..3115)
                     /locus_tag="SB815_001642"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004276347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HEG0907350.1"
                     /translation="MLNKGTEAPFSGKYNDFYEKGIYQCKQCGASLYKSEDKFKSGCG
                     WPSFDDEIKGAIKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKNVRHCVNSISLE
                     FVKTKD"
BASE COUNT         1133 a          550 c          373 g         1090 t
ORIGIN      
        1 ggcttttaaa acgcataatt tctgaggaaa taggagaaaa aatcagtgat gaaattttat
       61 ttggaaagct taaaaaaggt ggtatagcta aaatcaaact tggtaaaaat gaaaagctcg
      121 aatttatatt ctaaattact caatgcgcct aaaaatgctc ctgtattttt aagtcaaaat
      181 ttagaagctg attttattgt aaaagcttat acttttggtc tattcccatg gacaagtaaa
      241 cctgtaactt ggtggtgtcc agatcctaga tgcattttaa ttccaaatca aattcacatc
      301 caaaaaaata tgaaaaaatt tattaatctc tatcaaatta aacttgatta tgatttttta
      361 aaattaatta cattatgtcg cgatacacgc tctcaaagct ggatagatga tgaatttatt
      421 accacttatt ataagttatt tacccaaggc tatgcgcata gccttgaact ttatgaaaat
      481 aatgaactta taggtggaat ttatggttta attttaggca aggttttctt tggtgaaagc
      541 atggtaagca ttaaaaaaaa tgcatctaaa gttgccatga ttaaactttg tgatttatta
      601 aaaccttata attttatcat agattgtcaa gtttataacc aacatttaga atttatgggt
      661 gctcataata tttctaggaa agaattttta aatattttaa aagaaaaatg caatcaagaa
      721 agtggtttta aaaattttaa agatttaatt acttaaaaat aagcgtgaaa atcacgctta
      781 tgacatcgct ttagcaactt cagcagagct ttcacgaatt ttctccatac actctcttgc
      841 ttcttttgca agttcaacac tctgattaac atcctctaaa ccgcttttaa tactctcaac
      901 cacttgtgat gtaacattgc gaatagaatt aatcgtagtg gtaatttcat taaccgaatg
      961 ccctgttctt tcagctaaat ttcttacttc atcagcaaca acagcaaaac ctctaccatg
     1021 ttcaccagca cgtgctgcct caatagcagc atttaaagca agcagattag tctgatcagc
     1081 aatatcacta atagtttgaa taatagattt aatttcatct gattgttgat ttaatgagga
     1141 aacaagattt gaactttgag acatcatatc agcaatattc tgaacatttg aaacagtgtt
     1201 ttcaattaca cgatctccat cttgagtaag attatcattt ttttctgcaa gttcgcttat
     1261 gaggcaaagt ttttcttgat cttttttaac ttgttcgctt atatctgtag caaatttaat
     1321 aaccttgtaa atttttccat catcattttt aaccggatta taacttgctt caaggtatac
     1381 ttttttatta tttcttccgt atcttatata tttacctgat tgaaatttgc cctctcttaa
     1441 atcttcccaa aattgaacat agtccttaga gtgtctataa ttagaatcac agaacatgct
     1501 atgatgcttt cctttaatct catcaatatt aaaatccata gttcttaaaa aattttcatt
     1561 agccgtaata atagtcccat caggtttaaa ttcaataata gccatagaac gattagcagc
     1621 agcaatagta tttctaagat caagcatttc ataatgtctt tgagttatat cattggcaaa
     1681 tttaataatt ttataaacat gaccattatt atcactaatt ggaagataat ttgcttctaa
     1741 ataaacatct atccctccct tagctatacg tctaaaaaga ccacttctag cttttccatc
     1801 tcttaaatct ttccaaaaat cactatatgc tgaagaatta acaacttcag gcaaacaaaa
     1861 catactatga tgcttaccct tgatctctga aagggagtat ttcatagttg ttaaaaaatt
     1921 ttgatttgcc tctaaaataa cgccatcggt agtaaattca attaccgcca tggtattccc
     1981 aatagatctt aaaatatctc ctaaaccatt acattttttt tcaagttgtt caattatttt
     2041 agtattattt ttcttagcac caaacataaa actcaccttt ttaataataa attattttaa
     2101 aattatatca tatttatata gtattattta cttaaaatta tattaattta taagttaaat
     2161 atatccttta aacctacaat aatcatctta aaccccatag caacaataaa tacttgtgct
     2221 atacgagaaa aaacatgtaa aatcaatttt ccaactattt tttctatagt agctgcaaaa
     2281 tgaaaaagta taaacataaa aataaaagct atcattactc caccaagagc aacatcaagc
     2341 ccaccatctt cggctataac aataacgcta gctaaagttc caggcccaac aagcatagga
     2401 aatgccatag gtattaaact ctgtcttaaa atttccttat catccatatc ttgataagaa
     2461 ctaaaatcct tagttgcaat ttttgttgaa aaaagtaaat ttttaatagc cattataata
     2521 agaaccaaac caccagaaac ccttaaatca tccaatgaaa ctctaaaaat atagttcata
     2581 aataaaggtc ctgataataa aaacaccaaa actatagtaa aagctgtata gagaatagtt
     2641 ctaaaaagtt tttttcgaag cattaaaggc aatccatcac tcatagccaa aaattgagtt
     2701 aaattaccaa aaggatttaa tatagcaagt aaagtaattg cagcaaaaaa catcaaataa
     2761 agctcagaac ccatactaga aaacactatc aatccttagt ttttacaaat tccaaagaaa
     2821 tagaatttac acaatgtctt acatttttag cagaaaatcc ttctccttca aaaacatgac
     2881 ctaaatgtcc attgcagttt gcacatacaa tctcggttct aatcccatct ttatcaggaa
     2941 ttcttttaat agcccctttt atttcatcat caaagctagg ccatccgcaa cctgatttaa
     3001 atttatcttc ggatttataa agcgaagctc cacattgctt gcattgatag attccttttt
     3061 cataaaaatc attatatttc ccactaaaag gagcttctgt tcctttattt aaaattactt
     3121 ttttttcttc ttcatttaat tctttc
//
LOCUS       DARBAR010000142         2911 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.142, whole genome shotgun sequence.
ACCESSION   DARBAR010000142 DARBAR010000000
VERSION     DARBAR010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2911
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.142"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            63..1127
                     /gene="mqnE"
                     /locus_tag="SB815_001643"
     CDS             63..1127
                     /gene="mqnE"
                     /locus_tag="SB815_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HEG0907351.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDKSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            1137..2456
                     /locus_tag="SB815_001644"
     CDS             1137..2456
                     /locus_tag="SB815_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEG0907352.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            2470..>2911
                     /locus_tag="SB815_001645"
     CDS             2470..>2911
                     /locus_tag="SB815_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907353.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKEDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
BASE COUNT         1006 a          453 c          505 g          947 t
ORIGIN      
        1 tctttttcag taagcaaaaa ttataatgct ttatttaaaa acagcaaaag agtaaaatta
       61 aaatgaaaaa tttaatcacc aaactagaaa atgaagaaag attaaaccaa gaagaagcca
      121 atgcactttg ggatctagat ctttttacct taggcaaata cgctcacaaa aaacgcacta
      181 aacttcatgg aaaaaaagtc tattttaata tcaatcgcca tatcaaccca actaatatct
      241 gtgcagatac ctgtaaattt tgcgcctttt cagcgcaccg aaaaaatcct aatccttatt
      301 tgatgactca tgaagaaatc atgaaaatcg tcgatgaaac cgtaaaacga gaaaccaaag
      361 aagtgcatat cgtttcagct cacaacaaag atacaacttg gcaatggtat ttagaaattt
      421 ttaaaatgat aaaagaaaaa tatcctaatc ttcatgtaaa agctatgact gctgctgaaa
      481 ttgatttttt acatcgtcgt tttaaaatga gttatgaaga agtgatagaa aaaatgcttg
      541 aatacggcgt tgattccatg ccaggtggtg gagctgaaat ttttgatgaa gaagtgcgta
      601 agaaaatttg tcatggaaaa gttagcagtg aaaattggct taaaattcat aaactttggc
      661 atgaaaaaag caagcaaagt aatgctacca tgctttttgg acatatagaa gaaagacatc
      721 acaggatcga tcatatgtta agactgcgtg atcttcaaga tcaaaccggt ggattcaatg
      781 cttttatccc tttagtttgg caaagggata aaagctttat acaaactgat aaaatcatgg
      841 atagtgaaga aattttaaaa accattgcca tttctcgttt agtgcttgat aatatcaaaa
      901 atatcaaagc ttactgggca acaatgactt taaatttagc catggtagca caagaatttg
      961 gagctaatga tttagacggc actatagaaa aagaaagtat acaaagtgca ggtggtgcaa
     1021 agtccgccaa aggcacaagt ttaaaaactt ttatcgatat gataaaaact tcaaatctta
     1081 ttcctgtaga acgcgatagt ttatacaacg agctaaaaac ctactaagga gaaaaaatga
     1141 gcttttttaa actcaaagaa aacaatacga gttttaaaac cgaagttata gcaggactta
     1201 ctactttttt agctatggtt tacattatcc ccgtaaattc tagcatagta ggaaatacag
     1261 gaatgcctat agaagcttta atcaccgcaa cagctttaat taccatagtt gcaagtgctt
     1321 ttaatgcttt ttttgccaat actcctgtag ctatgagtgt aggaatgggt ttaaatgctt
     1381 attttacctt tgcggtttgt ttaggtcaaa acatagcttg gcaaagcgcc ttaggagctg
     1441 tttttatttc aagtattatt tttctcatac tttcttttac gcattttcgc ctttgggtaa
     1501 tccgcaatat cccaaaagat ttacgccttg caatttgtgc gggcataggt tgttttattg
     1561 catttttagg cttaagtcaa atgggtgtga taatgcataa taaagatacc ttagtcagca
     1621 taggaaattt caaaagccct catgtgcttt ttggaatttt cactctagct ttaatcatct
     1681 ttttttgggc tataaaactt cgcggagctt ttattttggg ggtattagca agctctatta
     1741 ttgcttggat tttccattta gacaatgcaa gttttcctgt gcaaatcttt tcttggccaa
     1801 attttagcat ggaaaatggt ttaggagcca tctttttaca acttgatatc aaaagcgcct
     1861 taaatattac tatgatacct ataattctta ctttttttat cactcaactt tttgatagca
     1921 taggaactat cacaggtgtg ggtgaaagag gaaagatttt tgatgatccc aaaaatggag
     1981 aaaaaaaact aagcaaaacc ttaatggcag atgcaacagg atcagcctta ggagctatga
     2041 caggcacttc tacagttaca gcctttgttg aaagcactac aggggttgaa agcggaggaa
     2101 gaactgggct tacagcttta gttgtagcta tttgttttgc ttttacactt tttttactgc
     2161 cactttttaa agccattcct gcaaacgcaa tataccccgt acttgtaatg gttggaattt
     2221 taatgtttat ggaagttaaa aatatagatt ttaaagatag tgctatagct gtagcaagct
     2281 tttttactat tatcatgatg ccttttactt actccatcac cacaggtttt gcttttggtt
     2341 ttctttctta tttacttgta agaattttta aacgcgaatg ggataaaatc aatcttggca
     2401 ttatagtttt aagtttatta tctttgggta attttttact tatggcacta caataaataa
     2461 ggatatataa tgatatttta ctcctatgaa gaatttaaag aagatgtaaa aattcttgct
     2521 aaagaaatta aagaagattt taaccctgat gcacttttag ctatagcaag aggggggatg
     2581 agtttaggac actctttagc agtggcttta aaaacgcgtc aactttttgc tttaaactca
     2641 attcattacg ataatacgaa aaaacttgat actattgaaa tttttaacat tcccgattta
     2701 agcaagcaca aaaaaattct actcattgat gatatagtag atagtggaga aagtttagca
     2761 gaaataaaaa aagttttgct tgaaaaattt cctcatatag aacttaaaat tacaaccatt
     2821 ttttacaaaa aaaccgctct tttagagcct gattttaaag taaaagaagc tactgaatgg
     2881 gtggattttt actgggatat aaatcttgat t
//
LOCUS       DARBAR010000143         2892 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.143, whole genome shotgun sequence.
ACCESSION   DARBAR010000143 DARBAR010000000
VERSION     DARBAR010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.143"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            23..583
                     /locus_tag="SB815_001646"
     CDS             23..583
                     /locus_tag="SB815_001646"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEG0907354.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDNVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            633..1637
                     /gene="pseB"
                     /locus_tag="SB815_001647"
     CDS             633..1637
                     /gene="pseB"
                     /locus_tag="SB815_001647"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HEG0907355.1"
                     /translation="MFNKKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSAAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKFVDKDNDFSINALGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTEGF
                     "
     gene            1639..2769
                     /gene="pseC"
                     /locus_tag="SB815_001648"
     CDS             1639..2769
                     /gene="pseC"
                     /locus_tag="SB815_001648"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HEG0907356.1"
                     /translation="MLTYSHQNIDQSDIDTLTKALKDEILTGGKKVNEFEEALCEYMG
                     VKHACVLNSATSALHLAYTALGVQEKIVLTTPLTFAATANAALMAGAKVEFIDIKNDG
                     NIDEKKLEARLLKESENIGAISVVDFAGNSVEMDEISNLTKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELIDKIKLLRSHGIVKKRLWDS
                     DMVELGYNYRLSDVACALGINQLKKLDHNLEKREEIANFYDKEFEKNPYFSTIKIKDY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGIGVQVHYKPTYEFSFYKKLLGEIKLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCG"
     gene            2762..>2892
                     /locus_tag="SB815_001649"
     CDS             2762..>2892
                     /locus_tag="SB815_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HEG0907357.1"
                     /translation="MDKLDFRSQDFSQTGKAMYELACELFPIPRSITGQGFRDSLEI"
BASE COUNT         1036 a          445 c          555 g          856 t
ORIGIN      
        1 acaaatatta aaaaggttaa aaatgggctt aaaagcggat aattggataa gaaaaatggc
       61 attagaacac aagatgatcg aaccattttg cgaagcaaat ataggaaaag gtgtggtaag
      121 ctatggactt tcaagctatg gttatgatat acgtgtaggg cgtgagttta aaatttttac
      181 caatgttaat tcaactgtag tggatccaaa aaatttcgta gaagaaaatg tagtagattt
      241 tgaaggcgat gtatgtatag ttcctgcaaa ttcttttgcc ctagctagaa ctatagagta
      301 ttttaaaatg cctgataatg tcttagctat ttgtcttggc aaaagcactt atgcaagatg
      361 tggcatcatt gtcaatgtta ccccttttga accaggtttt gaaggacata tcactataga
      421 aatttcaaat actacgcctt tacctgcaaa aatttatgcc aatgaaggta tagcgcaagt
      481 gttgtttttg caaggcgatg aaaaatgtga caccacttat aaagataaaa aaggcaagta
      541 tcaagcccaa actggcataa ccttgccaag aattttaaaa taggaacact tattgcttta
      601 attttaaaaa aacttaagca aaggaaggca aaatgtttaa caaaaaaaat atcttaatca
      661 cgggcggaac aggctcgttt ggaaaaactt atactaaggt tttgctagaa aactataaac
      721 ctaataagat tatcatttat tctcgtgatg agctcaaaca atttgaaatg gcaagcgttt
      781 ttaatgctcc ttgtatgcgt tatttcatag gagatgtaag agataaagag cgtttaagtg
      841 ctgctatgcg tgatgtggat tttgttatac atgctgctgc aatgaagcat gtgcctattg
      901 ctgaatataa ccctatggaa tgtataaaaa caaacataca cggtgcgcaa aatgtcatcg
      961 acgcttgttt tgaaaatggg gttaaaaaat gtatcgctct tagtacggat aaggcttgta
     1021 atcctgtaaa tttatacggt gcaaccaaac ttgcaagcga taagcttttt gtcgctgcaa
     1081 acaacatagc aggtaacaag caaacacgct ttggtgttac aagatatggc aatgttgtag
     1141 gttcaagagg ttcagtggtg cctttcttta aaaaactcat cagcgaagga gctaaagaac
     1201 ttcctatcac cgatacgaga atgactcgtt tttggatcag ccttgaagat ggagtaaaat
     1261 ttgtactgag taattttgaa agaatgcatg gaggagaaat ctttatccct aaaattcctt
     1321 cgatgaaaat caccgatcta gcccatgctc tagctcctaa tttaagccat aaaatcatag
     1381 gcataagagc aggagaaaaa ctacatgaaa tcatgatttc aagcgatgat agccatttaa
     1441 cctatgaatt tgaaaactac tatgctataa gcccgagtat taaatttgta gataaagata
     1501 atgactttag tatcaatgcc ctaggcgaaa aagggcaaaa ggtaaaagat ggtttttctt
     1561 atagctcgga taataatcct ttatgggcaa gcgaaaaaga acttttagaa atcatcaatc
     1621 atactgaagg tttttaaaat gcttacttat tctcatcaaa acatcgatca aagcgatata
     1681 gatacgctta caaaagcttt aaaagatgaa attttaacag ggggtaaaaa ggtaaatgaa
     1741 tttgaagaag ccctttgtga atatatgggc gtaaaacacg cttgtgtatt aaactcagcc
     1801 acttcagccc ttcatcttgc ctacacagca ctaggtgtcc aagaaaaaat cgttttaact
     1861 acccctttaa cctttgccgc tacagctaat gcggccttaa tggctggagc taaggtagag
     1921 tttatcgaca ttaaaaacga tggcaatatt gatgaaaaaa aactagaagc aagactttta
     1981 aaagagagtg aaaatatagg agctattagc gtggtagatt ttgcgggcaa tagcgttgaa
     2041 atggatgaaa tttcaaacct tactaaaaaa tacaatatcc ctttaatcga tgatgcaagc
     2101 catgctttag gtgctttgta taaaagtgaa aaagtaggaa aaaaagccga tctttctata
     2161 ttttcttttc accctgttaa gcctatcact acttttgaag gtggggctgt ggtgagtgat
     2221 aatgaagagc ttatcgataa aatcaagctt ttaagaagcc atggtattgt taaaaaaagg
     2281 ctttgggata gcgatatggt agaacttggc tataattacc gcttaagtga tgttgcttgt
     2341 gctttaggga taaaccagct taaaaaactc gatcacaatc ttgaaaaacg cgaagaaatc
     2401 gcaaattttt acgataaaga atttgaaaaa aatccttatt tttccacgat aaaaatcaaa
     2461 gactataaaa aaagttcaag acatttatat cctattttgc tttttcctga attttattgt
     2521 caaaaagaag aactttttga aagcttactt catgcaggaa ttggcgtaca ggtacattat
     2581 aaaccaactt atgagtttag tttttataaa aaactcttgg gggaaatcaa actccaaaat
     2641 gcagataatt tttacaaagc tgaacttagt ataccttgtc atcaagaaat gaatctaaaa
     2701 gatgcaaaat ttgtcaaaga tactttattt agcattcttg aaaaagttaa aaagggatat
     2761 tgtggataag ctagacttta gaagccaaga ttttagccaa actggaaagg ctatgtatga
     2821 actagcttgt gaactttttc ctatccctag gagtatcaca gggcaaggtt ttagagatag
     2881 cttagaaatt tt
//
LOCUS       DARBAR010000144         2833 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.144, whole genome shotgun sequence.
ACCESSION   DARBAR010000144 DARBAR010000000
VERSION     DARBAR010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2833)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2833)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2833
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.144"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            34..264
                     /locus_tag="SB815_001650"
     CDS             34..264
                     /locus_tag="SB815_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907358.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            254..496
                     /locus_tag="SB815_001651"
     CDS             254..496
                     /locus_tag="SB815_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907359.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            490..930
                     /locus_tag="SB815_001652"
                     /pseudo
     CDS             490..930
                     /locus_tag="SB815_001652"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
     gene            912..2765
                     /locus_tag="SB815_001653"
     CDS             912..2765
                     /locus_tag="SB815_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEG0907360.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKTKKN
                     LKAIVLKECQKPDFKTVEIKEITKYFLTPLQFELANFIVYYYASKLGFVLGFFETSPK
                     YECQKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLERFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FCKQKSFRLKGTFFESKKHFLYDENELSITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNVLKCHYCNYTSLIEQNCPSCKGEMLEARKMG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKDFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IEDYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQQSSQKLCEKLAYQFKNIKQVELV
                     GYGICGVEMLHGKYRFYLLLRSENHKALVAIENYILQFKNVSADIDPIDFV"
BASE COUNT         1048 a          342 c          493 g          950 t
ORIGIN      
        1 cataaattac aaatttctta agaaggcaaa aatatgtttg atgaaaaaat aatcaatact
       61 atgacagata aagtaaatga attaattgaa aagtataacg aagtttgcga agccaatgag
      121 gctttaagaa atgagcttgt aagcgttaaa gcacaaaatg aagcaaaaag taatcaaatc
      181 atgcgtttag aagaagaact taaatctcgc aatatagaaa gcgaagatat ttataagaaa
      241 atagaggctg ttcttggcag ataatctaaa acaagtcatt gttaatgtca atgcaaaaga
      301 tttcattgtt aagtgcagtg aagaatttgc aaatttttta gaagatgata tcgctttgat
      361 ttctggcggt actaaaaaaa tagaacttaa acgctttgta gatgcgtttg ttaaaaaaag
      421 ttatgaaaat tatattttag aaagagaact taagaagcta ataaaagcaa tcaatgaaga
      481 actcccgaca aaatgaataa agcttttact ctgcttgagc ttgtttttgt gattttgatt
      541 ttgggaattt tatcaagctt atctttatct tttatcaata ctacaaaaga tgaggttaaa
      601 attttaaaat taaaaatgga ctatgaaatg ctaagctcag ctcttgcttt aatgcgtagt
      661 caaatgagac ttaaaaattt aaattttcca gaaattttag ataatgcgca aaacaatcaa
      721 gccaaagaaa aactctttta ttgtttaaat gattgtgatt attctttgct tgatacacct
      781 atttattctg attttaaatc ttggataaaa ataggtaaaa atcactatag atttgcatta
      841 aacgcgaaag agatggttga atttatttat gattctaaag aaggcttgtt aaagtgtata
      901 ggaagttcta gatgcaaaga tctgatataa gatattatga acttgcaatt tgtggtttgt
      961 atttggataa tttaactttt catagttttg atgaaatcaa acctttaaca caagtattag
     1021 tggatttaaa aactaaaaaa aaccttaaag ctatcgtgct taaagaatgt caaaaacctg
     1081 attttaaaac cgtagaaatt aaagaaatta caaagtattt tttaactcct ttgcaatttg
     1141 aattggcaaa ttttattgtt tattattatg cttcaaaact tggttttgtt ttgggttttt
     1201 ttgaaaccag tcctaaatat gaatgtcaaa aaatgttttt taaagatacc cctaaactaa
     1261 gcaatcaaca acaaaatgcc ttaagttttc ttcaaaaaga aaacaactcc ttactttttg
     1321 ctgacacagg tagcggcaag accgaaattt atatttcttt gataaaagag tgtttagaac
     1381 aggggaagca agctttgctt ttgatgccag aaatcgcact tactccacaa atgcaaaagc
     1441 gtttagaagt gtattttaag gataattttt tcctgtggca ttctaaaatt tcaaagaaaa
     1501 aaaagcaaga atatttagag cgtttttgca agggagaagt acttttagta gcaggtgcaa
     1561 gatcggcttt gtttttgcct tttagaaatt taggacttat tgtagtagat gaagaacacg
     1621 ataattctta taaggcttcc aatcagcctt ttatcaatgc aagagattta gcactttttt
     1681 tgggtcaaaa aaataatatt aaagtggttt taggttctgc aaccccatct ttaacgagtt
     1741 tttgcaaaca aaaaagtttt agattaaaag gaactttttt tgagagtaaa aaacattttt
     1801 tatatgatga aaatgagctt agtataacac ctatgctttt aagcgaatta gaaaaaagtt
     1861 taaaacatca aaaacaagct atagtgtttt tacctacaag ggctaatttt aggcaaatca
     1921 tttgcaagga ttgtggggaa acgataaaat gtcctttttg ttctattgct atgagtatgc
     1981 ataaaaagaa aaatgtttta aaatgccatt attgtaatta tacttctttg atagagcaaa
     2041 attgtccaag ttgcaaagga gaaatgttag aagctagaaa aatggggact gctgaacttt
     2101 tagagctttt gcaaaatgct ttgcctttag caaaaatagc aaaatttgat agcgatgaaa
     2161 tcacaagcgt taaaaagctt aatactattt taaaagactt taatgaaaat aagatcgata
     2221 tacttattgg cacctctatg cttgctaaag ggcatgatta tcatagcgtg gatttgagtg
     2281 tgattttagg gcttgatgag tatttgttgc gtcctagttt tagagcgagt gaagaaactt
     2341 tagctttagc tatgcaagtt gctggtaggg cagggcgtaa aggtgaagca agagtgcttt
     2401 tacaaacaaa aaatagagct ttttttgaaa ggtatataga ggattatgat gcttttttaa
     2461 aagatgagtt agaaaataga aaagatcttt accctccatt taaacgcctt ttaagagttc
     2521 ttatagaaga taaagatcaa caatcctcac aaaagctctg cgaaaaactt gcctatcaat
     2581 ttaaaaatat caaacaagta gaattagtag gctatggaat ttgtggagtt gaaatgctgc
     2641 atggaaaata tcgtttttat ttattgctta gaagtgaaaa tcacaaagct ttagtggcaa
     2701 ttgaaaatta tattttgcaa tttaaaaatg taagtgcgga tattgaccct attgattttg
     2761 tgtaagtgat ataattattt gtctttatat attttttcaa attctttata gtatgtccaa
     2821 gagttaatta tat
//
LOCUS       DARBAR010000145         2814 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.145, whole genome shotgun sequence.
ACCESSION   DARBAR010000145 DARBAR010000000
VERSION     DARBAR010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.145"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..235)
                     /locus_tag="SB815_001654"
     CDS             complement(<1..235)
                     /locus_tag="SB815_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG0907361.1"
                     /translation="MQNSLETYTMKYNENGYGLLFPDGHVVRFYERILKYKLNKINGN
                     LLDFGCGNGVHSAYFQSKGFKTFGIDIVPSLKEI"
     gene            complement(253..1373)
                     /locus_tag="SB815_001655"
                     /pseudo
     CDS             complement(253..1373)
                     /locus_tag="SB815_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
     gene            complement(1490..1876)
                     /locus_tag="SB815_001656"
     CDS             complement(1490..1876)
                     /locus_tag="SB815_001656"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907362.1"
                     /translation="MDDLNCDFIHFFNTIYIKLIELCGSNLERFTPLKDLKKLGFHII
                     CSKGNRGALANLLLFNEISSFFKIIEKYDYNFKECQTVYDLLYEKRNLLNIIDTIGIE
                     LCNKICKNLKEDDENFYHPKIFKKAL"
     gene            complement(1864..2184)
                     /locus_tag="SB815_001657"
     CDS             complement(1864..2184)
                     /locus_tag="SB815_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HEG0907363.1"
                     /translation="MKEINIIDFGLMGKQISALFYLLGHEIGVYNKSKLNIYEFEKQI
                     KLLQRKIDFSNFNAGKINICQHIEDLKNSLTIESLNEDLNLKKEIMQILRDNNIVFSR
                     VWMI"
     gene            complement(2257..2799)
                     /locus_tag="SB815_001658"
     CDS             complement(2257..2799)
                     /locus_tag="SB815_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HEG0907364.1"
                     /translation="MKNVIIIGAGGFARELYSYLKDANYEIIGYIDIQENIFFDLKYL
                     GNEDNFDKKLIQKASFALGVGQINLRKKILVKLSKKSCNFITFIHPQSFVSKEAKIGQ
                     GVIVCPFVTINANSNIGDFVLCNIYSSIAHDCKVGEGSILSPYATLNGNSSIGKNCFL
                     ATRVSLLPCVNLEDNCIVSR"
BASE COUNT          930 a          452 c          319 g         1113 t
ORIGIN      
        1 aaatttcttt taaacttgga actatatcta ttccgaaggt tttaaaccct ttgctttgaa
       61 aatacgctga atgtacacca ttgccacaac caaaatcaag taaatttcca tttattttat
      121 ttagtttgta ttttaaaatt ctttcataaa aacgtactac atgaccatct ggaaaaagta
      181 atccgtatcc attttcatta tatttcattg tataagtttc taatgagttt tgcatttctt
      241 tcctttatat ttttattgta atttattttt taatttaaat tctccaaaat catttttata
      301 aaataaatcc atattgtaat gtttttctac tattttccaa aatgtagttt tactaatacc
      361 tatgaaattg caaaaatctt caacgcatct attgtcaagc ttacgatctc ttttttgcac
      421 aagttcaata gcttcttttc tgcttaaaag tccataacgc acgaaacgag ctgcgtaatc
      481 actcgcacaa gcatgaccaa atttagggta tttcatccaa gcgtgtagga tatagcctat
      541 actatcaact tgatcaaaat tttctgcaca cattgttcta tcccattcgc cttctagatc
      601 agtaaaacca cgacttttag caaaaatata attgctataa gaattccatt ttacaaaata
      661 acttagataa ataggattaa gtttgttgat atcatttgca ttgggattaa aaaagagttg
      721 tagattttct tctttgattt cattatctat aaattcattt atatctaaat cactagctgt
      781 accatttaaa aatatttctt tggcgctagg agtttctttg tcatcactac ctccatattc
      841 ataactaaca ttttctccat aaaccaataa aggtgtatta aattttaaag ccatagcaaa
      901 aggatagctg taaatcagtc tatcaataaa ccaagtgggt tttccatatt tttcaaaggt
      961 ttttagcata actttttttg agttttgata tcaggcttta agctaataat atgacaacca
     1021 aaagtttcac ttaagtttct aagatttttc ttacctgctt cagtcatggt gaaattatct
     1081 tcaacgctaa aaagaatagg attcattcca agtttttctt tcatgatatg cacttgaaaa
     1141 tgcgaatctt tacctccact tacggcaata gcgcaatcat attcaaattt tccattcatt
     1201 ctgcggtatt tatcgcataa ggcttcaagc tctttaaatc ttgctttata atcaatattt
     1261 tctttatttt tatgattgat gcaagctgaa cagatatttt taccttcttt atcttttgta
     1321 aaattaatac caggtctagt atttggcatc acgcagtgat cacaataaat cattccccac
     1381 cccttcaatt taataaaaat attagattgt ataaaatatt aaattaatat ttgcttattt
     1441 tataaaatat cacttatgtt tgttttattt ttctacctaa aattcctttt tataaggcct
     1501 ttttaaagat ttttggatgg taaaaatttt catcatcttc ttttaaattc ttacaaattt
     1561 tattacaaag ttctatgcct atagtgtcga taatatttaa caaatttctt ttttcataaa
     1621 gcaaatcata aactgtttga cattctttga aattataatc gtatttttct ataattttaa
     1681 aaaatgatga aatttcattg aacaaaagta aatttgctaa agctcctcga ttgcctttac
     1741 tgcaaatgat atgaaatcct aattttttaa gatctttcaa tggggtaaat cgttctaaat
     1801 tagaaccaca aagttctatt aatttgatat aaatagtatt gaaaaaatgt ataaaatcgc
     1861 agtttaaatc atccatactc tcgaaaaaac tatattatta tctctaagaa tttgcatgat
     1921 ttcttttttt aaatttaaat cttcatttaa gctttctata gtcaagctat ttttaagatc
     1981 ttctatatgt tggcaaatgt ttatttttcc ggcgttaaaa ttagaaaaat ctatttttct
     2041 ttgtagaagt tttatttgtt tttcaaattc gtatatattg agcttgcttt tattataaac
     2101 acctatttca tggcctaata aataaaataa agcacttatt tgcttaccca ttaaaccaaa
     2161 gtctatgata ttaatttctt tcattgtttt ttccttgttt taattatatt tttatgaaaa
     2221 ataagttgat tggatgtgta gtttttgcta ataatactac ctgcttacta tgcagttatc
     2281 ttctaagttt acgcaaggca acaggctaac tctagtagct aaaaaacaat tttttcctat
     2341 gcttgaattt ccattaagtg tagcataagg gcttaaaata cttccttctc ctaccttaca
     2401 atcatgagct atgcttgaat aaatattaca aagcacaaaa tctcctatat ttgaattagc
     2461 attaatggtt acaaaaggac acactataac cccttgtcct attttagctt cttttgaaac
     2521 aaaagattga ggatgtataa aagtgataaa attacatgat ttttttgaaa gttttacaag
     2581 gatttttttt cttaaattga tttgtcctac acctaaagca aaagatgctt tttgaatcaa
     2641 ctttttatcg aagttatctt cattgcctag atattttaag tcaaaaaaaa tattttcttg
     2701 tatatcaata tagcctataa tttcgtaatt tgcatctttt aaataagaat aaagctctct
     2761 agcaaagcca cccgctccta tgatgatgac atttttcacg cacttctcct aaaa
//
LOCUS       DARBAR010000146         2599 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.146, whole genome shotgun sequence.
ACCESSION   DARBAR010000146 DARBAR010000000
VERSION     DARBAR010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2599
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.146"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            89..2062
                     /gene="uvrB"
                     /locus_tag="SB815_001659"
     CDS             89..2062
                     /gene="uvrB"
                     /locus_tag="SB815_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEG0907365.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKDRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLKLGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            complement(2057..>2599)
                     /locus_tag="SB815_001660"
     CDS             complement(2057..>2599)
                     /locus_tag="SB815_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HEG0907366.1"
                     /translation="NIITFTTMFIVGFLTAVFTRRLKLQSKELTKRAYRTAILLENSE
                     KLARVKSKQELWEQLGNQALKLLNLPIIIYPINKNNILSKPLLFFNDDKQMLKNCFSA
                     DEIAIAQWVATNKERAGVCTNTLPNANAMYLPIEDGEKTKGVIGIVLKEKRPLQDFQY
                     EILSALLNEVGVRTRDIFLL"
BASE COUNT          945 a          401 c          432 g          821 t
ORIGIN      
        1 atttaaattt aggtttttat tgtcaattaa tttttaatta aagcattttc ttttaaaatt
       61 ttttcaaaaa taaaaataaa gtagaaaaat gttagaactt accagcgaat ttaaacccag
      121 tcccgatcaa caagaagcca taaaaggcat agtaaaaagt ataaaaaaag gcaacaaata
      181 tcaaacttta ctaggcgtta caggaagtgg aaaaaccttt accatggcaa atgtcattaa
      241 agaacttaat atacctactc ttatcatgag tcacaacaaa agcctttgcg ctcaacttta
      301 tagcgaattt aaaggctttt tttctaaaaa tcatgtggaa tattttatat cttattatga
      361 ttattatcaa cctgaagcct atatcccacg cactgatgtt ttcatagaaa aagacagctc
      421 gactaatgaa gacttagagc gtttaagact gagtgctact gcttcacttt taagttatga
      481 agatgtagtt tgcatagcta gtgtttcagc aaattatgga cttggtaatc caaatgaata
      541 cataggcatg gttttaatct ttgaactagg tatgcaaatt tcacaaaaag aacttttaaa
      601 aaaacttgta gatatgggtt ataaaagaaa tgataatttt tttgatcgtg cggattttag
      661 agttcaagga gatattatag atatttatcc agcttattat gaagatgaag tggtaagact
      721 tgaatttttt ggcgatgagc ttgatgctat gtatcattac aatgttttag aaaataaaaa
      781 aggcaaagat ttaaaacgct ttatactcta tcctacaagc cagtttagcg tgggcgaaac
      841 aagattaaaa caagcgataa aagatatcaa agcagaactt aacgaacgcc ttgcttattt
      901 tgaacatgaa aataaactcg tagaatatca acgccttaaa caaagggttg aatttgatct
      961 tgaaatgctt acaagcacag gaatgtgtaa aggagttgaa aactatgcaa ggcatttaac
     1021 aggacttaaa gaaggtgata ctccttatac gctttttgat tattttgcga ttaaagatag
     1081 aaaatttctt gtcatagtcg atgaaagtca tgtatcttta cctcaatttc gtggtatgtt
     1141 tgcaggagat agaagcagaa aacagacctt ggtggattat ggttttcgtt tgccttcagc
     1201 cttggataac cgtcctttaa tgtttgatga atttatccat aaaaattgtc aatttctttt
     1261 tgtttcagct acacctgcac ctttagaact tgaacttagc aaagaaaata tctttcatca
     1321 aatcatgcgt cctacgggac tgcttgatcc tttaatagag ttaaaagata gcgataatca
     1381 ggttgaaatt ttatttgatg aggctaaaaa agtcatacaa agaaacgaac gggttttagt
     1441 aaccgtgcta actaaaaaac tcgctgaaga gcttacaagg tattatttaa agcttggtat
     1501 aaaagtcaaa tacatgcact cagatatcga tgctatagaa cgcaatgaaa tcataagagg
     1561 tttaagaagt ggtgcttttg atatgctaat tggcattaac ttacttagag aaggactaga
     1621 cctacctgaa gtttcactca ttgccattat ggatgcagat aaggaaggct ttttaagaag
     1681 tactacaagt ttaatccaaa ccatgggaag agcagctaga aatgtcaatg gtaaggtttt
     1741 gcttttttgc aaaaaaatca caaaatccat gcaagaagct atggatacca ccaatgaacg
     1801 ccgcaaactt caaatggctt ataataaaaa atacaatatc acaccaactt cagtcaaacg
     1861 ccatattgaa gagagtttaa aaaatgaaga ggatttaggc gaaatttatc gcaaaggtaa
     1921 aaaactagaa aaaatgcctg ctagcgaaag agcaaagctt gtcaaagagt taagaaagca
     1981 aatgcttgaa gcagccaaag cacttgagtt tgaaaaagct gccgcaatta gagatgagat
     2041 taataaatta agggatttat aataaaaata tatcccttgt tctaactcct acctcattaa
     2101 gtaaagcact taaaatttca tactgaaagt cttgcaaggg acgtttttct tttaaaacta
     2161 tacctatgac ccctttagtt ttttccccat cttctatagg taaatacata gcattagcat
     2221 taggcagggt atttgtacaa acacctgctc tttctttatt tgttgcaacc cattgagcaa
     2281 tagcaatctc atcagcacta aaacaatttt ttaacatttg cttatcatcg ttaaaaaaca
     2341 acaaaggttt cgataaaata ttgtttttat ttataggata aataataata ggtaaattta
     2401 ataattttaa agcttgattt ccaagttgtt cccaaagctc ttgtttgctt ttcactcttg
     2461 ctaacttttc actattttca agcaaaatag ccgttctata agctctttta gtgagttctt
     2521 tagattgcaa ttttaatctt ctagtaaaaa cagctgttaa aaatccaact ataaacatag
     2581 ttgtaaaagt aataatatt
//
LOCUS       DARBAR010000147         2594 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.147, whole genome shotgun sequence.
ACCESSION   DARBAR010000147 DARBAR010000000
VERSION     DARBAR010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2594)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2594)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2594
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.147"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..821)
                     /locus_tag="SB815_001661"
     CDS             complement(<1..821)
                     /locus_tag="SB815_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907367.1"
                     /translation="MFLLDFLISLSFIFEISALVLSFYFKNSKIFFLTLVLLGAKLPY
                     FYTSFFQANLFVALFLPMIFTLFCVGKHHVLILNKKNIASITTLIFIGILSIILPRNT
                     TFNSAGLEFHFIALDFFKPVSELGFLFFLVGLILIFIKTFKTKEYYLLIAFFTAYFQF
                     LFQEGAGIRYFEFASLVFCFYLLNHAYRLAFFDTLTKLPNEKSLTRFTKGKNNYIIAL
                     LHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVENDFILIFNDKNQALNHLAF"
     gene            complement(883..1092)
                     /locus_tag="SB815_001662"
     CDS             complement(883..1092)
                     /locus_tag="SB815_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG0907368.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     DNSKKTHEELLHIEQTIQDEIAKFK"
     gene            1261..1488
                     /locus_tag="SB815_001663"
     CDS             1261..1488
                     /locus_tag="SB815_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superinfection immunity protein"
                     /protein_id="HEG0907369.1"
                     /translation="MEGASGGSIFVTILLFILYMLPAIIGLSRKHSNWLIISLLNLFF
                     GWTIIVWLVCLIWSFTGSFKQTIIIKEKNEK"
     gene            1497..2129
                     /locus_tag="SB815_001664"
     CDS             1497..2129
                     /locus_tag="SB815_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HEG0907370.1"
                     /translation="MTKFLSICSLIAMLLSGCGSDFPGQPSDVARVQQNKYPNGNLKE
                     EIPYNKDSRIHGLKRAFYDNGQLRAEENYKNGKKDGISREYSRNGQLLEEVHFKDNRG
                     YGDFASYYENGNMRAKGKLLGYNEDGMPEFEGNYKEYYENGTLMCDYNFDNKGKFDGV
                     QKRYDENGALEDEENYKNGLKNGVFREYKKGEIVREEEYKNGILVAKPKN"
     gene            2142..2558
                     /locus_tag="SB815_001665"
     CDS             2142..2558
                     /locus_tag="SB815_001665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907371.1"
                     /translation="MFKKVILFFLMGFALLQANSLDKCDNTAVVSNLKEKIPSEIFKN
                     LYELSGLKAQGIDYEDYAKGLKEIAKHDGMVNYTDMIEVNSISNFDLNFDSCMATINA
                     ALKGEQRKGLWSVVYKVSNINQVKITDITYINGDFQ"
BASE COUNT         1017 a          265 c          426 g          886 t
ORIGIN      
        1 aaaaaagcaa gatgatttaa agcttgattt ttatcattaa aaattaaaat aaaatcattt
       61 tctacgataa aaatttttgc tctaaagcgt tttaaaattt ttgcaatttg ttttaaaatg
      121 agtttggtat agctttcttt ggtatctttt agttcattaa aatgaagcaa ggcaatgata
      181 tagttgtttt ttccttttgt aaagcgtgta aggctttttt cattgggtag ctttgttaag
      241 gtgtcaaaaa aagctaacct ataagcgtga tttaaaagat aaaaacaaaa aaccaaactt
      301 gcaaattcaa aatatcttat tcctgctcct tcttggaata aaaattgaaa atacgcagta
      361 aaaaatgcga taagaagata atattcttta gttttaaagg ttttgataaa aatgagtatt
      421 aagccgacta aaaaaaataa aaatcctaat tcactcacag gtttaaaaaa atctaatgca
      481 ataaaatgaa attctaaacc agcactatta aaagtagtat ttctaggtaa aatgatactt
      541 aaaatgccta taaaaataag ggttgtaatt gaagcgatat tttttttatt taaaattaaa
      601 acatgatgtt ttccaacgca aaatagagta aaaatcatag gtaaaaataa agctacaaat
      661 aaattagctt gaaaaaaact tgtataaaaa taaggcaact tggctcctaa tagcactaaa
      721 gttaaaaaga aaatttttga atttttaaag taaaaggata atacaagtgc tgaaatttca
      781 aaaataaaac tcaatgatat taaaaaatct aataaaaaca ttatcaaatc cttgatttta
      841 ataaaagtga taattgtata gaaaaaagct taaaagcgga ttttatttaa atttagcaat
      901 ttcatcttgt atggtttgtt ctatatggag taattcttca tgagtttttt tgctattatc
      961 taaaagttca tcaaatttaa agccaagcat aacaatacga tataaattgg gtttatattt
     1021 tctccaatta tataaagtgc taacatcaat gtctagttca tatgccatat cacgcttgct
     1081 cttttttgtc attttttacc ttaaaaattt agcctttaaa aaattttaca ttaaaatttc
     1141 tttattaaaa acacttgaaa tattcaatct tttatataaa atatatttaa tatttcaata
     1201 ttaattaagt tatagtatgg aataatagtt tttataaaat ttttatttaa ggagaattac
     1261 atggaaggtg caagtggcgg gtctattttt gtaacaatat tattgtttat attatacatg
     1321 ttgcccgcta ttattggttt gagcagaaag cattctaatt ggctgataat ttctttgcta
     1381 aatttgtttt ttggttggac tattattgtt tggcttgttt gtttaatatg gtcttttacg
     1441 ggaagtttta agcaaactat tattattaaa gaaaaaaatg agaaatagga gaaaaaatga
     1501 caaaattttt aagcatttgt agtttaattg cgatgttgtt aagtggttgt ggaagtgatt
     1561 ttcctggaca acctagcgat gtggctagag ttcagcaaaa caaatatcca aatggaaatt
     1621 taaaagaaga aattccctat aataaagatt caagaataca tgggttaaaa agagcttttt
     1681 atgacaatgg tcagctaaga gctgaagaaa attataaaaa tggaaaaaaa gatggaatta
     1741 gcagggaata ttctagaaat gggcaattac ttgaggaggt gcattttaaa gataatcgcg
     1801 gatatggtga ttttgcaagc tattatgaga atggaaatat gagagcaaag ggaaaactac
     1861 ttggctataa tgaagatggt atgccagaat ttgaaggtaa ttacaaggaa tattatgaaa
     1921 atggaacttt aatgtgtgat tataattttg ataataaagg taaatttgat ggagtacaaa
     1981 agcgttatga tgaaaatggc gccttagaag acgaagaaaa ttataaaaat ggacttaaaa
     2041 atggagtctt tagagaatat aaaaaagggg agattgtaag agaagaagaa tataaaaatg
     2101 gtattttagt agcaaaacct aaaaattaga ggagtttaga tatgtttaaa aaagtaattt
     2161 tatttttctt aatggggttt gccttgcttc aggccaactc attagacaaa tgtgataata
     2221 cggcagttgt ttcaaatctt aaagaaaaaa ttcctagtga aatttttaaa aatctttatg
     2281 aattatccgg acttaaagcc caagggattg attatgaaga ttatgcaaaa ggcctcaagg
     2341 aaatagccaa gcatgatgga atggtaaatt acactgatat gatcgaagtt aattccattt
     2401 caaattttga tcttaatttt gattcttgta tggctacgat taatgctgca ttaaaagggg
     2461 aacagagaaa aggtctttgg agtgttgttt ataaggtttc taacataaat caagtgaaaa
     2521 ttacagatat aacttatatc aatggagatt tccaataata tttttattaa agtaagtcaa
     2581 tagaattaat ttca
//
LOCUS       DARBAR010000148         2584 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.148, whole genome shotgun sequence.
ACCESSION   DARBAR010000148 DARBAR010000000
VERSION     DARBAR010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2584
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.148"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..2302
                     /locus_tag="SB815_001666"
     CDS             <1..2302
                     /locus_tag="SB815_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907372.1"
                     /translation="DGGQVYAKYTAIGVGQWQTLGDLYIDGRSNNGTVSGIYSEERGI
                     SLDANSRTQKIELKNGGIIKGKIHGIRLDNGASLSGEMILSGEGSRVEGGRGVGILNR
                     SGKIEGSITIKDGATVTATSNRAIANSGSGSITGGITVSGKNTKLEGNIINTGNASIG
                     SDIKIEGGAKVEGGLVNQGNGSISGSVQVSGGSSIDSITNEGNGAISGSITVDKDSKL
                     DSITNTSTSSTGISGSITNNSDNKLEISNSGNIGGKIESTGSADMVISNSNGGTISGG
                     ISSSGSGSTSISNSQGSTINNGITVSGSAQVEISNQGSVGKDENGNTVTNNGSGSVGI
                     KDWLVSTDKNTGKLNTVVIGGRRAVNVKVENITVDQSNVDLDELDNINHIISGVNQGN
                     IGNIGTNGSGEISLSYDPITGKLTTDFNLNASISGATFRSLISTTSRRSTFIDNVMGN
                     SMQSFALASSSKSQSIAMSEKGNLYADASDYIKSDLNNGSYGSNKEHSLFILPYTSSQ
                     NVELSLNEESKGHAKGTIIGYSTLKDSGIYGVYAGYEDRKMGSTYFDINNRTYYAGLK
                     YFNTLFTTEKGQEVYIKAQGKAALIKNDLTKKIGNNEAKAEPNSYAYGVNTALGMNFI
                     SNKDIFSPEIGLAYEGGYTEAFSMKDTIGQATVKGGERTYANYLNLFSTKTSLTWFRD
                     WLPNLKTSVELGAKFNINPKVEAEARFGNIKVSDEFDLPRVQKFVSTSFIVPVNEAFY
                     FSLNYNGMFDKDGNTHTGFAQFNYLW"
BASE COUNT          938 a          329 c          498 g          819 t
ORIGIN      
        1 agatggaggt caagtttatg caaaatacac ggcaatagga gtgggtcaat ggcaaactct
       61 aggagattta tatatagatg gacgttcaaa taatggcaca gtaagtggaa tttatagtga
      121 ggaacgtgga atttcattag atgctaactc acgaactcaa aaaatagaac ttaaaaatgg
      181 cggcattata aaaggtaaga tccatggtat aagattggat aatggtgcct ctttaagtgg
      241 agaaatgatt ttatctggcg aaggttctag ggtagaaggt ggaagaggtg ttggtatatt
      301 gaatcgaagt ggaaaaatag aaggctctat aaccataaaa gatggagcaa ctgttacagc
      361 tacttcgaat cgagccatag ctaactctgg ctcaggaagt ataacaggtg gtattactgt
      421 tagtgggaaa aacactaaac ttgaaggaaa tataatcaat acaggtaatg cttctatagg
      481 tagtgatatc aagatagaag gtggagctaa ggtagaaggt ggtcttgtta atcaaggtaa
      541 tggaagtatc tcaggaagtg ttcaagtaag tggtggtagt agtattgatt ccattaccaa
      601 tgagggtaat ggagctattt ctggttcaat tactgtagat aaagatagta aacttgattc
      661 tatcactaac acttctacat catctacagg tataagtggt tctattacta acaatagtga
      721 taataagctt gaaatttcta attcaggtaa tatcggtggt aagattgaaa gtacaggtag
      781 tgctgatatg gtgattagca atagtaatgg tggaactatt agtggcggta ttagttcttc
      841 aggaagtgga agcactagta tttccaattc acaaggctca accataaata acggcatcac
      901 tgtttcagga tcagcacaag ttgaaatctc caatcaaggc tcagtaggta aagatgaaaa
      961 tggtaataca gtaactaaca atggtagtgg tagtgttgga atcaaagatt ggcttgtttc
     1021 tacagataaa aacacaggta aattaaacac tgtggttata ggtggacgta gagctgttaa
     1081 tgtaaaagta gaaaacatca ccgtagatca aagcaatgtt gatcttgatg aattagacaa
     1141 tatcaatcat atcatctcag gtgttaatca aggcaatatt ggcaatatag gaaccaatgg
     1201 aagtggagaa atatctttaa gctatgatcc aataacagga aagcttacta cagattttaa
     1261 tcttaatgct tccatatcag gtgcaacctt tagatcttta atctctacta cttcaagaag
     1321 atcaaccttt atagataatg ttatgggtaa ttctatgcaa agctttgctt tagcttcttc
     1381 aagtaaatct caaagcattg ctatgtctga aaagggtaat ttatatgcag atgcaagtga
     1441 ttatataaag agtgatttaa ataatggaag ctatggttct aataaagaac attctttatt
     1501 catccttcct tatacttctt cacagaatgt tgaactttct ttaaatgaag aaagtaaagg
     1561 acacgctaaa ggaaccatta taggttattc tactttaaaa gacagtggaa tatatggtgt
     1621 gtatgcaggt tatgaagata gaaaaatggg ttcaacttat tttgatatta ataatagaac
     1681 ctattatgca ggtttaaaat actttaatac cttatttact acagaaaaag gtcaagaagt
     1741 ttatatcaaa gctcaaggta aagctgcttt gattaaaaat gatttaacta aaaaaatagg
     1801 aaataatgaa gctaaagctg aacctaattc ttatgcttat ggagtcaata cagccttagg
     1861 tatgaatttt atttctaata aagatatatt ctctcctgaa ataggtcttg cttatgaagg
     1921 aggttatact gaagcttttt ctatgaaaga caccatagga caagcaacag ttaaaggtgg
     1981 agaaagaacc tatgcaaact atttaaatct tttctctact aaaacaagtc ttacttggtt
     2041 tagagattgg ttgcctaatt taaaaacttc agtagaactt ggagctaagt ttaatatcaa
     2101 tcctaaagta gaagctgagg ctagatttgg taatataaaa gtaagtgatg agtttgattt
     2161 accaagagta caaaaatttg taagcacttc ttttatcgtt cctgttaatg aagctttcta
     2221 ttttagttta aactataatg gaatgtttga taaagatggc aatacccata caggatttgc
     2281 tcagtttaat tatctttggt aatcttataa aagataatac ttagtttaat tagtttactc
     2341 tcctacttgt taaaaatttc atcctgataa ttttaaaatt attaggatgg atgtttttaa
     2401 ggttattaaa ctctttttag attgcaatca ttcttttaaa gtattttaaa aactcaacaa
     2461 agattataac aatacaatca ttttaaatta ttttaatacg attaaaaaga agtgaagagg
     2521 attgaagagt aaaaattaat tttttaaaat ccttgcaagt ttaagtaaat ttgaaatcaa
     2581 aaat
//
LOCUS       DARBAR010000149         2532 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.149, whole genome shotgun sequence.
ACCESSION   DARBAR010000149 DARBAR010000000
VERSION     DARBAR010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2532)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2532)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2532
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.149"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..624)
                     /locus_tag="SB815_001667"
     CDS             complement(<1..624)
                     /locus_tag="SB815_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HEG0907373.1"
                     /translation="MDLKSLENNRLYILKRLGVLKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEEQIYIK
                     LQDKNFTLNHVFSKENHYLIATLSNPFFIDIKKDLESNFKDLEENLNS"
     gene            complement(624..2432)
                     /gene="typA"
                     /locus_tag="SB815_001668"
     CDS             complement(624..2432)
                     /gene="typA"
                     /locus_tag="SB815_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEG0907374.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
BASE COUNT          771 a          497 c          358 g          906 t
ORIGIN      
        1 agaatttaga ttttcttcta aatctttgaa attgctttct aaatcttttt ttatatctat
       61 aaagaaagga ttgcttaaag tagcaataag ataatgattt tctttagaaa aaacatgatt
      121 taaagtgaaa tttttatctt gaagtttgat ataaatttgc tcttcatttt caaagctagg
      181 atttttgttt gcacttaaaa tttcgagcaa aattccgcaa aaaaagcgtt tattttcgtc
      241 caaaaactga atatcataaa ttttaaaatc cttaaattca aagcagtttt gacttttaaa
      301 ttctttcaaa tcctttgtaa gtcctaattt taaaaagtct ttttggctta aactttgctt
      361 tttaaatttt gccccaaaac gacgcaaaaa taaatttaaa gcattaattt gcaattcttt
      421 ttgtgcgagt tttagttttt tagctgtaaa acgaaagaaa aaaacaccta caaaaacagc
      481 taaaattact gcgattaagg catctcttat aaaaacaaag gctaaaaaac ctacaagtaa
      541 ggcttcgata atgcttagga attttaagac tcctaagcgt ttaagtatat aaagtctatt
      601 attttctaag ctttttaaat ccattaagat tttgcttttt ccattctttt tctttgagtt
      661 ggatcaagat agcgtttgcg aacacgcaca tttacaggcg taacttctac aagttcatct
      721 tcttctatcc actctaaagc tctttcaaga cttaattttc taggtggcac aagcttgatt
      781 gcatcatcgc ttccacttgc tcttacattg gtaagattct ttcctttgat aggattaaca
      841 tctaaatcat ttggacgaga gtgctcacct ataatcatac cggtataaac tttagtttga
      901 ggctctatga aaagtactcc acgctcttga aggttaaaca aagaataccc taaagccacg
      961 ccattttcca tagaaattaa cgctccatta ttacgctttt caaccgcacc gctaaaagga
     1021 cggaattcta aaaagctatg attcatcacg ccttcgcctt tggtatcagt taaaaactga
     1081 cttctaaaac ctataagtcc gcgtgctgga atttcaaact caagtcttgt ttgtccatcg
     1141 cctgttggtg ccatggtttt catttcagct tttcttttgc caagtttttc tattaccgca
     1201 ccactaaatt cttcaggcac atcgataact aaatgttcaa aaggttctgt tttaactcca
     1261 tcttcaactt ttacgataac ttcaggtctt cccatgcaaa actcaaaacc ttcacgacgc
     1321 atattttcag ctaaaatagt gatttgaagt tcgcccctac cgcttacttt aaatttacct
     1381 tctcctgtgc tttcgtattt catagcaata ttagttttca tttcagcttc taaacgttca
     1441 gcgattttat ttgaagttac atgttttcct tcagttcctg ccaatggtcc atcatttaca
     1501 gaaaatacta tgcttaaagt cggctcttca atgtgtaaag gatcaagtgg cataggattg
     1561 tttggatcta caacgctatc gccaacatct aaagcttcaa aacctgctat agctacaata
     1621 tctccacttc ctgcttcttc aatatccatt ttttctaagc ccataaaacc aatgagtttt
     1681 gaaattctac catttacttt ggtgccatca gcttttgcaa gcattacgct ttgatttttc
     1741 ttaacaaccc cattgaaaat tctagcaatg cctattttac ctacgaaatt atcataccct
     1801 aaagtgaaaa cttgaagttg taaaggattg tcatttgtac cacttggcgc tggaacgcgt
     1861 tcaagtatgg ttttaaaaag tggctccata ttatcacttt catcgtttag atcaagctta
     1921 gcataaccat tttttgctgc agcataaact atagcaaagt caagttgctc atcgtttgca
     1981 tctagggcta caaaaagatc aaaaatttca ttgatcactc tttcaggatc agcagctggt
     2041 ttgtcgattt tgttgattac aactataggt ttaagcccta aagataaagc ttttttaacc
     2101 acgaatttag tttgcggcat aacgccttct tgagcatcta ctaaaagcaa aactccatca
     2161 atcattttta aaacgcgttc tacttctccg ccaaaatcag catgccctgg agtatctatg
     2221 atgttgattt ttgtaccttt gtaattgatc gctgtgtttt ttgaaagtat ggtaatgcca
     2281 cgttcttttt ctatatcgtt gctatccata acgcgttctg aaatttgttc tctttcgcta
     2341 aaggtgcctg attgttttaa taattcatct accatagtgg ttttaccatg gtcaacgtga
     2401 gctataactg ctatatttct aatgttttcc aaattttctt ctccaaagct aaatttttaa
     2461 aagcttagat tatacaaaaa tttaacttaa actacaaagc atcaaaactt ggaacacttc
     2521 ttgctttaaa ga
//
LOCUS       DARBAR010000150         2499 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.150, whole genome shotgun sequence.
ACCESSION   DARBAR010000150 DARBAR010000000
VERSION     DARBAR010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2499
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.150"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(96..647)
                     /gene="ruvA"
                     /locus_tag="SB815_001669"
     CDS             complement(96..647)
                     /gene="ruvA"
                     /locus_tag="SB815_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEG0907375.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLVSAQATGTSELIKEALKKLG"
     gene            complement(623..2482)
                     /locus_tag="SB815_001670"
     CDS             complement(623..2482)
                     /locus_tag="SB815_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG0907376.1"
                     /translation="MALDEKIIAYTENPARELLSVASRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKKLMSFCNQYKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIVVDENEVVLKHV
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDKNYDE
                     EFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPVQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFCSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
BASE COUNT          725 a          406 c          334 g         1034 t
ORIGIN      
        1 ttgataactt ttttaagcac tacagcactt actatactaa tctcatgttc ataagaattt
       61 ccgccaaaaa gtattgcaaa tttcatttta ttcctttatc ctagtttttt aagagcttct
      121 ttgatgagtt cgcttgtgcc tgttgcttga gcacttacta aaacacttat gattttttct
      181 tgtttaaagc ctagagtaag aagtgcggct aaggcttcgc ttttatcatc gcttacattt
      241 tcaagtttgg tttttgtgtc agaaagttct actataatgc gttttgcact ttttggacct
      301 atgccaggta cttttttaag cacgctttca tcgcccaaac ttaacgcttt gtaaaaagaa
      361 tttacatcaa gactagagca taccgccata gcagtatttg cacccactcc attgactttt
      421 aaaagcattt caaacatttt ttgttcatct ttatccaaga agccataaaa tttattagaa
      481 tcttctttga tgatttgagt gataaaaaac tcatgctttt cttgagtttg aattttagca
      541 gaacaaaaaa gagaaataaa tatcccatag cttaaaccac tagcacattt aacaatgata
      601 aaagtaggtt ctttttttgt gattattcct tcgatgccga caaccatgct atatcctttt
      661 cttcataatc taatttttta tgtatttcta tactttcttg gttgttttgt atgacttttt
      721 taatgcctat aaatttagca ctttcattaa caaatgaaga gcaaaaaata tcttctttag
      781 gctctagaag tgaaaatttg atttcattca tatcagtcca tttgccgctt ttatttataa
      841 aagttgcttc aaaaagcatt ttttgcaaat tgattaattc taattgcaaa gattttttgc
      901 gttcaagaag ttctttttct tcattttgta gtttatttaa ttcaagattt tgtaaagaga
      961 aatcttttag ggctttttcg tattgtacag gaacattttg accttgattt ttaagttctg
     1021 ttatcttttt ttcaacgctt aaaattccat ttttgcttga taaaatgtat tgtcttattt
     1081 tatttatttt atgatttaac ttagaaattt gctctcctaa aatcgcaaat tcttcatcat
     1141 aatttttatc aagagtttta attttagcat gaaatttatt gttatccccg ttaatgcgtt
     1201 ctattgtggt gttttcaaaa aacacacaag aattattact ttctaaattt tctatataga
     1261 ttttatcagc ttgtatattt ccgcctaaac tttttttaat tctcacttct ttggctttga
     1321 ttgttccacc ttcgagcaaa tctatattta aaatttcggc ttccgcaaat cctctatgag
     1381 tttttatata ggcttgtttg gcttgaattt tggctttaga gtgcgtagtg ccttcaattt
     1441 tcattttggt ggcattaagt tgagtgttgc ttcctacgct tccgactaca tttaattctt
     1501 cacattctat cccaacgcca gaatttacag catcttttac ttctgaaaga aattttatat
     1561 tgattttgac atttttgtct agtccagctc ttataatccc tatattttta aaatctaccc
     1621 cattaaaatc tagttcattg gcgatatcaa atttttcacc atcttgtact acataacctt
     1681 tttttaaggc tatatattct gtgtatccat cttgctctac ttgtttaaaa gccgaagaac
     1741 aagaaaattt aactttattt tcatttgcag ctaaaacttt taaggtgtgt aaatttaagt
     1801 cttttccttc tttaccttgt ttaaatttga cgtgttttaa aacaacttca ttttcatcaa
     1861 caacaataat acctgagcgt ttttcatcga tagtgtagtt tttggttttt tctttataag
     1921 tcaagatcag agattcatct tgactttcta taggatcaat accttgtgca acggtgattt
     1981 gtatagtttt atttaaaggg gtgtttttat attggttgca aaaagacatt aattttttct
     2041 taaaatcaaa aatgcggata cctattaaaa atttaagttt caacatcttt ttataaatat
     2101 tttgcaaaag ttctagtgct agtttttcat gaaagtctaa atttgtaaaa tcaatttgag
     2161 caactatttt ggttaaattt ttatttgcaa ctagtttgac tgcttgagat gctttgcttt
     2221 ggtttatacc gtggaaaatt tctattttgt attcttgctt gatttgaaga tcatttttta
     2281 aaaaaatttc atctttatca aaaagagtta attctttttc agagattttt tcccattcta
     2341 aatctccaaa acgatattgt gtagaaaatg ccaataaact aaaatcaagc tcatttaagc
     2401 taaggtttgt tcgtgaagct acgcttaaaa gctctcgagc tggattttct gtataggcaa
     2461 taattttttc atccaaagcc aaaactttcc ccttgtaaa
//
LOCUS       DARBAR010000151         2372 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.151, whole genome shotgun sequence.
ACCESSION   DARBAR010000151 DARBAR010000000
VERSION     DARBAR010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.151"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..211
                     /locus_tag="SB815_001671"
     CDS             <1..211
                     /locus_tag="SB815_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907377.1"
                     /translation="NVKEKIHFFAMFFTLFKLMAYVILVAGFLFLHRQDKLDIFAYIC
                     GISSLLVCVFIFILYIKKYESKKNY"
     gene            189..1376
                     /locus_tag="SB815_001672"
     CDS             189..1376
                     /locus_tag="SB815_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0907378.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFVGALIGTISTHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            1369..>2372
                     /locus_tag="SB815_001673"
     CDS             1369..>2372
                     /locus_tag="SB815_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG0907379.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKLENFKNYISKNPSHAQEKITPIANKILKELNSIKNDFFK
                     ALNKPENLMIKDPNILKQTATAFEKLENTLKNILGNQASKIQDKENILENLLSNKENM
                     "
BASE COUNT          848 a          323 c          338 g          863 t
ORIGIN      
        1 aaatgttaaa gagaaaatcc atttttttgc tatgtttttt actctcttta aattgatggc
       61 ttatgtaata ttggttgctg gatttttatt tttacatcgc caagataaat tagatatctt
      121 tgcttatatt tgtggaattt catccttgct agtttgtgtg tttattttta ttttatatat
      181 aaaaaagtat gagtccaaaa aaaattatta aatcaatgac agcacttttt gctggtatgg
      241 catttttatt tgcaggtaat gccttgatag taagctctat aggtgttata ttaaaagaaa
      301 acggagaaag ttctttagct gttggagtag taagttcttg tttttttgta ggcgctctta
      361 ttggaaccat cagtactcat aaaattattt ctcgtatagg tcatatacgc tcttttgggc
      421 tatttggtgc tatttttgga atttcagcta tgcttcatac agtaagcgaa aatcttattt
      481 tttgggctgt tttaagattt ttcataggaa tttgctacta tggactttta atggttatag
      541 aatcatggct taatgaaaaa agcaaaaatg ccattcgatc tagaatttta ggtttttatg
      601 aaattgtttt ttatcttgcg tttggtattg gagttttaat catagcgtta aatttaagca
      661 aacatagtgt atttatcctc agtgcaactt taattttact ttcatcttta cctttaaatc
      721 taattaaaat caaagaacct gttttacccg catcaagtcc tatttctata cctaaaattt
      781 ttgatatagc tcctttagct atcgtcacaa gctttatagc cggaatgctt ataaatggct
      841 ttttttctat ggcatcttta tttatacttt tgcaaggttt tgatacaaaa gcggtttctt
      901 attttatatt ttgtggggtt ttaggtggtt ttattgcaca aaccatcata ggaactattt
      961 cagacaaact tggtcgcaaa tttgccatta tcacttgtgc aagtatagga tttatcacta
     1021 tgcttatatt tatctttttt aaacttcatt tatatatgca atatttttta ggaattactc
     1081 ttggtatagg aatattttgc ttatatgctt tagcacttgc tagagcaaat gatgttttag
     1141 taagcaaaaa taaaggtgta gagttaggtc gtggggttct tttttgttat tctttgggct
     1201 ctttgtttgg ccctttaatt ttaggttttt taatgcaata ttttgaaatc aaaggtttta
     1261 tatggtttta tatagtttct ttagcatttt taattctttt tgctatcaat aaaccaaata
     1321 ttttaaataa aaaatttaag aaaaagcctg gaaatatggt gatatttgat gattaatact
     1381 caactagcaa gtcaaattgc caatacgcaa aaaaatgatt taaaagtaga taactctgct
     1441 tcaaaagata aaacaaattt aaaagacaat ccaaaagaag cacttgcaca agctttaaag
     1501 caaaatttag gtttaagcaa ggacgctagt agtgaggaaa tactagcaaa atttgttcaa
     1561 aatgaaacag gtaccaaatt aaaagaactt gttaataaac ttttagatca aatcaatgct
     1621 caaaaaaatc ccgattcccc tgtacttaaa caaggaaaaa atttaaattt agctcctaat
     1681 tttgctaatg aattaaaaat cttaagtaca gaacttgcaa aaagtgatac ttttacacaa
     1741 gttttagaca gattaaatca aattttaaaa cctgccagtg aaataaaaaa caataactta
     1801 gctcctttgt ttaaaaattc aggcgtattt ttagaagcta aattaaaaga tgccctaaac
     1861 gaagaattac tacccaaaag ttttcactct cttttaagta caatcaaagg tcttagtagc
     1921 gaaaaactaa gcgttcagat agcccagctt gcaaatacaa atttaagccc aaaagacact
     1981 ttaaaagaat taaaaaatat tattaattct agcaaaaatg aaaataagca aattttaaat
     2041 caaagttctt ttaaagcact tttaaattta agttctaaat tggaaaattt taaaaattat
     2101 ataagtaaaa atcccagtca tgctcaagaa aaaatcaccc ctatagctaa taaaatttta
     2161 aaagaattaa attccatcaa aaatgatttt ttcaaagctc ttaataagcc agaaaattta
     2221 atgataaaag atccaaacat ccttaagcaa actgctaccg cctttgaaaa acttgaaaat
     2281 actttaaaaa atatactagg caatcaagct tctaaaatac aagataaaga aaatatttta
     2341 gaaaatcttt taagtaacaa agaaaatatg aa
//
LOCUS       DARBAR010000152         2321 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.152, whole genome shotgun sequence.
ACCESSION   DARBAR010000152 DARBAR010000000
VERSION     DARBAR010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2321)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2321)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2321
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.152"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            101..484
                     /gene="ctb"
                     /locus_tag="SB815_001674"
     CDS             101..484
                     /gene="ctb"
                     /locus_tag="SB815_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HEG0907380.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
     gene            complement(481..2304)
                     /gene="recG"
                     /locus_tag="SB815_001675"
     CDS             complement(481..2304)
                     /gene="recG"
                     /locus_tag="SB815_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEG0907381.1"
                     /translation="MKIKESDFEFFKKLKIRSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVGKELIFNAKLS
                     HFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYENLKESGIEDKYIH
                     FLLNLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQINVFNIANW
                     LKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAALMVYPKQAI
                     LMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLVIGTHALIHLE
                     SHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSMIQSELLNFS
                     FIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLLSASDKIPYLSLEQ
                     AKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLPRLSMIVIVG
                     AERLGLATLHQLRGRVGRVGLKSACYLYTKLKEIPSRLKEFTSTLDGFKIAELDLKNR
                     LSGDLLDGFMQHGNEFKFFDFSKDEEILEKVKKDLAKKLPN"
BASE COUNT          815 a          374 c          304 g          828 t
ORIGIN      
        1 tttcattata taatatttcc attcttaact tatgttaaat ttaatttatc ttatttttgc
       61 tatattaacg ccataaaatt aacatttaag aaaggcttat atgaaatttg aaacaattaa
      121 tcaagaaagc atagcaaaac tcatggaaat attttatgaa aaagttagaa aagataagga
      181 tttaggtcct atttttaaca atgctattgg aacaagcgat gaagaatgga aagaacataa
      241 agcaaaaata ggaaattttt gggcaggcat gcttttaggc gaaggtgatt ataatgggca
      301 acccttaaaa aagcacttag atctacctcc ttttcctcaa gagttttttg aaatttggct
      361 aaaacttttt gaagaaagtt taaatatagt ttataatgaa gaaatgaaaa atgtcatttt
      421 acagcgtgca caaatgatag cttcacattt tcaaaatatg ctttacaagt acggcggaca
      481 ttaatttggc aatttttttg ccaaatcttt ttttaccttt tctaaaatct cctcatcctt
      541 ggaaaaatca aaaaatttaa actcatttcc atgttgcata aaaccatcga gcaaatctcc
      601 actcaaacga tttttaagat caagctctgc tattttaaac ccatctaaag tgctagtaaa
      661 ttcttttaaa cgactcggaa tttctttaag cttagtataa agatagcaag cacttttaag
      721 ccctacacga cctacacggc cacgaagttg atgtaaagta gcaagtccta aacgttccgc
      781 tcctacaatc actatcatac tcaatcttgg caaagaaata cctacttcca ccactgtagt
      841 gcttagtaaa atatttccct cgtctctaaa acgctctaaa atttcatctt tttgtttatc
      901 ttttccatga gttacaaaaa ctttttcata atgactctgc caatattctt tggcctgctc
      961 taaagaaaga taaggaatct tatcactagc actcaataag ggataaataa tgataatttg
     1021 atgattttta gcgatttctt ctttgatctt ctcgctaagc ttagaaaaac cttcattttg
     1081 tatgcaataa gttgtaatat cttttttaaa aggcatttgt ttaataaagc taaaatttaa
     1141 aagttcagat tgtatcatgc ttaaagttct tggaataggc gtagctgaaa actgtataaa
     1201 atgaggggca aattcttgtt tatttaaaga atgaattttc tcacgctgag ctgatccaaa
     1261 acgatgttgt tcgtctatca ttacaagtac ggcattatgg ctttctaaat gaattagagc
     1321 atgagtgcct ataacaagat ttgctttttg gatattttgt tctaaatctt tttctttttt
     1381 acccccttta ataaacaaaa tattcataaa atcaggtaaa aatttcttag cctcttcata
     1441 aagctgatac gctaaaatac tagtaggtgc cattaaaata gcttgcttag gataaaccat
     1501 caaagccgca ccaagtaaaa ccaaggtttt accacacccc acatcaccca taatcacacg
     1561 ccttttggct tcttttgagt gtaaatcttt ttctatgtct tttaaggcat taagctgatc
     1621 tttagtaaga gaaaaaggca aatctttaag ccaattggct atattaaaaa cattgatttg
     1681 atgagcttta aaatgcgttt ttttagcttt taaacgcttt aaaaaattat atatttctat
     1741 atattttaaa tctttgctaa aattttgcaa attttcaaac ataaaaaaac ttttttcatc
     1801 ataagcatgc aaatttaaaa gaaaatgtat atatttatcc tctatgccac tttcttttaa
     1861 attttcataa ttaagatatt tatgtataaa agcagcaatt tttgtatctt ttaaacctaa
     1921 aatttgatac tttggactaa aaccctcaaa agaagttaaa attttaggat tgttaaattg
     1981 ccaagtgtga ttaaaatgcg agagtttagc attaaaaata agctcttttc ctaccttaca
     2041 aataccaaaa tgccaagctc taggatgaaa aaacacaaaa gaaatatttt cttgccattc
     2101 ctcacaaaaa cctaaaccaa aaagttgatt ttttcttgaa ctaacgcttt ttatagtgat
     2161 tttttgggta caaatttcat tttctttagg atttttactt ggatttaaat tttcaatttt
     2221 tttaggtaaa agaagcgcta aatcaatagc acttctaatt tttaattttt taaaaaattc
     2281 aaaatcactt tctttaattt tcattttgta tgcttgcaaa a
//
LOCUS       DARBAR010000153         2310 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.153, whole genome shotgun sequence.
ACCESSION   DARBAR010000153 DARBAR010000000
VERSION     DARBAR010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.153"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..212
                     /locus_tag="SB815_001676"
     CDS             <1..212
                     /locus_tag="SB815_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HEG0907382.1"
                     /translation="KKRFELLKFLCENADENGFIMIKISDLEEKLHQSKPTIIATFKF
                     LEEKKLFKRLKNGFYQLNIGDKNET"
     gene            202..1209
                     /gene="pyrC"
                     /locus_tag="SB815_001677"
     CDS             202..1209
                     /gene="pyrC"
                     /locus_tag="SB815_001677"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEG0907383.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLC
                     NLEDLKAYKMRILKACKDENFTPLMTLFFKNYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPKDTKECCGCAAGVFSAPVILPVLAELFKQNSSEE
                     NLQKFLSDNTCKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     H"
     gene            complement(1241..1456)
                     /locus_tag="SB815_001678"
     CDS             complement(1241..1456)
                     /locus_tag="SB815_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907384.1"
                     /translation="MVKNLIIKFGRLILDAIAVISFVVALLYSLFMMFSIGFLAGLLS
                     LIVSFIALFLSFFCNLSCYRYQRCSCK"
     gene            complement(1512..2231)
                     /locus_tag="SB815_001679"
     CDS             complement(1512..2231)
                     /locus_tag="SB815_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG0907385.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLKISFQDKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANAMLEILQEDAKKLNLNNIKCKNLSFETWMQNNP
                     NVKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKSDFLDPIFKYFNTEFKG
                     FYKKDLENYLLEKNIFFHKIVFDETRKVQRTKEEAIENALWHLSMNKITASKETVSSF
                     VENNITETIESKIKLLIINNL"
BASE COUNT          854 a          308 c          323 g          825 t
ORIGIN      
        1 gaaaaaagcg ttttgaattg ttaaaatttt tatgtgaaaa tgccgatgaa aatggtttta
       61 ttatgattaa aatcagtgat cttgaagaaa aattacatca aagtaaacct accatcatcg
      121 ctacttttaa gtttttagaa gaaaaaaaac tttttaagcg tcttaaaaat ggattttatc
      181 agctaaatat aggagataaa aatgaaactt aaaaatcctt tagatatgca tttgcattta
      241 agagataacc aaatgttaga acttattgca cctttgagtg caagagattt ttgtgcagct
      301 gtgattatgc caaatttaat ccctccgctt tgcaatttag aagatctaaa agcttataaa
      361 atgcgtatcc ttaaggcttg taaagatgaa aatttcactc ctttaatgac actttttttt
      421 aaaaattatg atgagaaatt tctttacagt gctaaagatg aaatttttgg cattaagctt
      481 tatccagcag gaattacaac aaattcaaat ggtggagttt caagttttga tatagagtat
      541 ttaaaaccta ctttagaggc tatgagtgat ttaaatattc ctttgctagt gcatggtgaa
      601 accaatgatt ttgtaatgga cagggaaagt aattttgcta aaatttatga aaaattagcc
      661 aaacattttc cacgacttaa gattgttatg gagcatatta ccactaaaac tttatgtgaa
      721 cttttaaaag attatgaaaa tttatacgcg acaatcactt tacatcattt aatcatcact
      781 ttagatgatg ttatcggagg taaaatgaat cctcatcttt tttgtaagcc tatagccaag
      841 cgttacgaag ataaagaagc cctttgcgaa cttgctttta gtggttatga aaaagttatg
      901 tttggaagtg atagtgcgcc tcatccaaaa gatactaaag agtgttgcgg ttgtgccgca
      961 ggtgtattta gtgccccagt gattttacct gttttagctg aattatttaa gcaaaatagc
     1021 tcagaagaaa atttgcaaaa atttttaagc gataatactt gtaaaattta tgatttaaaa
     1081 tttaaagaag ataaaatttt aactttagaa gaaaaagaat ggcaagtacc aaatgtttat
     1141 gaagataaat acaatcaagt cgtgccttat atggctggag aaattttgaa atttcaatta
     1201 aaacattgat tttccacctt aaaggtggaa aatttaagct ttatttacaa gagcatctct
     1261 gatatctata acaagataga ttacaaaaaa aacttaaaaa taaagcaata aaactgacta
     1321 tcaatgacaa taaaccagct aaaaatccaa tgctaaacat cataaaaaga gaataaagca
     1381 aagctacaac aaaacttatc actgcaattg catcaagaat caagcgtcca aatttgatga
     1441 ttaaattttt aaccattaaa aactcctttg aaataatgag tgaaattgta atcaatataa
     1501 gcttaatatt tttataagtt atttataatt aaaagtttta ttttagattc tatagtttca
     1561 gtaatattat tttcaacaaa agaacttaca gtttctttag aagctgtgat tttgttcata
     1621 cttaaatgcc atagagcatt ttctatagcc tcttcttttg ttctttgaac tttgcgtgtt
     1681 tcatcaaaaa caatcttatg aaaaaatata tttttttcta gtaaataatt ttctaaatct
     1741 tttttataaa aacctttaaa ttcagtatta aaatatttaa aaatcggatc taaaaaatca
     1801 ctttttctat aatcagccca accaagataa atttttattt tggctagatt taagaaattt
     1861 gtataatctt tttcattttg taaagcagga gacatactta aaaatgcaag atcaaattta
     1921 acattaggat tgttttgcat ccaagtttca aagctcaaat ttttgcattt tatattgtta
     1981 agatttagtt ttttagcatc ttcttgtaaa atttcaagca tagcatttgc actatctagg
     2041 gctaaaattt ctttagcttc tttagctaag tgtaaagtcc aaaccccagt tccacatcct
     2101 atatctataa tacttttatc ttgaaaggaa atctttaaat tttgtaaata ttcaaaagtt
     2161 tgtttttgta tagtgtttaa agtgttttga tatcttgcgt aagttttagc ctttttatcc
     2221 cataaattca tatactttcc tttataaaat atataaaatc atagcataaa tttttaaaat
     2281 tcaagcccaa agaaagggct tgaatgatta
//
LOCUS       DARBAR010000154         2296 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.154, whole genome shotgun sequence.
ACCESSION   DARBAR010000154 DARBAR010000000
VERSION     DARBAR010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.154"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            30..1055
                     /locus_tag="SB815_001680"
     CDS             30..1055
                     /locus_tag="SB815_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG0907386.1"
                     /translation="MKVKALLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGVSTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
     gene            1149..>2296
                     /locus_tag="SB815_001681"
     CDS             1149..>2296
                     /locus_tag="SB815_001681"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEG0907387.1"
                     /translation="MRLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPVNLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLINLKIAEK"
BASE COUNT          774 a          300 c          467 g          755 t
ORIGIN      
        1 tttaatttat ctttaatagg agtttataaa tgaaagtaaa agcattgcta atcgcatcct
       61 tagttgcttt ttcaagctta aatgctgcaa gtcttataga tgaagctaaa aattcaggtc
      121 ttgttgcctt gccaaaagat caaaaaggtg ttgatgaaat tttaaaacaa aatggagtaa
      181 aggctagtga atttactctt gaaaaagcag agcttggcaa aaagctttat tttgaaccac
      241 gcctttcaaa aagtggtatt atttcttgta atacctgtca caatgtagga cttggtggaa
      301 cagatggggt tagtactgca ataggtcata aatggacagc aaatccccat catttaaatt
      361 caccaacagt ttataatgcg gttttaaata atactcaatt ttgggatggt cgtgcaggaa
      421 cattagccga tcaagctaaa ggtccaatcc aagctgatcc tgaaatggca actcctgcta
      481 aactcgcagt agaaaaaatt tcatcattgc ctgaatatgt gagtgagttt aaaaaaatct
      541 atggtaaaag tggtgtaaat tttgacaata ttgctgatgc aattgcaaat tttgaaagaa
      601 ccttgatcac tccatctcgt tttgataaat ttttagaagg cgatgaaaaa gctttaacaa
      661 aagaagagca aaaaggctta aagcttttta tagacaaggg ttgtgtagct tgtcataatg
      721 gtgtgaattt aggtggcaat atgcaagcgt ttgaagttgc tggtaaatat aaatttgcaa
      781 atttaggtga ttttaaaggt gatgcaaatg gcatggtaaa aactccaact ttaagaaatg
      841 ttgctgaaac tgctccatat tttcataatg gcgctatttg gaatctaaaa gatgctatta
      901 aggaaatggg tagtgtgcaa cttggcatta aaatttctga taaagaagca aaaagtattg
      961 aaactttctt aaaatcctta acaggaacaa aaccagcaat tgtttatcca caacttccta
     1021 tttctactga aaaaactcct aaacctgaac tataaggttc caaacaagct ctatttttag
     1081 agcttgttta aatttcttta tcttagcttt gttataattg tctttaaatt ttgctagaaa
     1141 ggtttgcaat gagacttttt ggaactgatg gagttcgtgg aaaagcgggt gaatttttag
     1201 atagtttttt ggctatgcgt ttagcaatgg ctgcgggtat ttattttaaa gataaaagta
     1261 ttactaataa tatcttagta ggaaaagata caagaagaag tggctatatg atagaaaatg
     1321 ctattgtttc agggcttact tctataggat ataatgttat acaaattggt cctatgccaa
     1381 ctcctgcgat tgcattctta actgaagata tgcgttgtga cgcagggatt atgatttcag
     1441 cttctcacaa tccttattat gataacggta ttaaattttt tgatgctcat ggaaataaac
     1501 tcagtgaaga tatagagaaa aaaatagaag aaatttattt tgatgataag cttatacaag
     1561 cctctaaggt agatatggaa aaaattggtc aagcaaaaag aattgatgat gttataggaa
     1621 gatatattgt ttctattaaa aattcttttc caaaagatct tactttaaag tctttgcgtg
     1681 ttgttttaga tgtggctcat ggggcagctt ataaggtagc acctactgtt tttaaggaat
     1741 taggcgctga agttatagta atgagtgata aacctaatgg acttaatatc aatgaaaatt
     1801 gtggagcttt gcatcctgta aacttagctg ctgaggtaaa gcgtttgcgt gcagatgtgg
     1861 gctttgcttt tgatggtgat gcagatcgtt tggtggttgt agatgaaaaa ggcgaagtgg
     1921 ctaatgggga tagtttattg ggtgtattgg cactttatct taaagaacaa ggtaaattac
     1981 aatcaagtgt tgtggctact ataatgagta atggtgcttt aaaagagttt ttaaataaac
     2041 atggtataga acttgatact tgtaatgttg gcgataaata tgtgcttgaa aaactaaaag
     2101 ccaatggtgg aaattttggt ggagaacaaa gtgggcatat tatttttagc gattatgcaa
     2161 aaactggaga tggtttgata gctgccttgc aatttagtgc tttaatgctt tctaagaaaa
     2221 aatctgcaag ttctattttg ggtcaagtta aaccttatcc tcagctttta atcaatctta
     2281 aaattgcaga aaaaaa
//
LOCUS       DARBAR010000155         2254 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.155, whole genome shotgun sequence.
ACCESSION   DARBAR010000155 DARBAR010000000
VERSION     DARBAR010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2254
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.155"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            29..1126
                     /locus_tag="SB815_001682"
     CDS             29..1126
                     /locus_tag="SB815_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HEG0907388.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLAFKGILW"
     gene            1221..1793
                     /locus_tag="SB815_001683"
     CDS             1221..1793
                     /locus_tag="SB815_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907389.1"
                     /translation="MKKILVSVLSSCLLASALSAVSFKEDSLKISFEGYKTKDMIGTK
                     GEFKNVEYKFSKNIKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDVIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSK
                     ALKALSDVAAGHGGISWPLVDISFNADLAE"
     gene            complement(1809..>2254)
                     /gene="rsmG"
                     /locus_tag="SB815_001684"
     CDS             complement(1809..>2254)
                     /gene="rsmG"
                     /locus_tag="SB815_001684"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEG0907390.1"
                     /translation="NIDENIFDSIKILDFYDFSKAKNIADMGSGAGFPAVFLAFLLQS
                     NFHLFEPNPKKAAFLRTLKIECELPNLHIYKEKVQEYKNTFKADIITSRALMDVKPLL
                     EICKNLKDENTVFILWKGSEIYQELENIKDYEIFENNLRRYCILK"
BASE COUNT          719 a          280 c          397 g          858 t
ORIGIN      
        1 aacacaaaat ttacaaaaag gaaaataaat gaaaacaagt tttttagcac atagcgtggc
       61 tatagtgcga tcaaatttta agggtttgct ttttactgct tgtatagtga tttttgctat
      121 gtatctttct agtgttcaaa gtatcaaaga taccactcat ttagcagcga ctgcttttgc
      181 tattatcata ggagtgttgc tttctccttg gttttttaaa taccaacatc attttcaagc
      241 cggagtgcat tttagtgcga aaaaactttt aagacttggc attgttttat atggttttaa
      301 tatcacttta actgagcttt taagtgtagg attgaaagga tttttgcttt ctgctatagt
      361 gatatttttt gtttttatta ttgctttatt tgtgggaacg aaaattttta aactcgataa
      421 agaaacttct atgcttgttg gagctggaag tgcgatttgc ggtgcggcag cggttttagc
      481 actagagtca agtttgaaaa gtgatccttt taagggaatt ttagctgtag gtacggtggt
      541 gatttttgga cttgtattta tgttcttata tcccatagct ttttctttaa atctttttcc
      601 tttttttgat caaaatgcta tgggtgtttt tatgggagct acgttgcatg aggtggcaaa
      661 tgtcgcaggt gctgctgaaa tggcaaagga tatggcagga tttgagcaag gtgcttctaa
      721 tgttgcagtg attataaaaa tgatgagagt gattttactt gtgccttttt tgcttatagt
      781 gacttatttt ttcgctaaaa atcaacattc aagcagtgga aaaactgcaa aaagtatcac
      841 tataccttat tttgcttttg catttttagg catgatagtt ttaaatactt atttagcaag
      901 caaagaaagt attttaggta ttgctacgag cgatatcatc tctttaggta aaacactttg
      961 tactttatgt atcgtttttg ctatggcagc tttaggcttg caaattgact ttaaaaaatt
     1021 tttaaaaagt ggctctaggg tatttggctt ggcttttgtt ttagggcttg ttttgatttt
     1081 tggaggatat tttttaacct tagcttttaa aggtatactt tggtaataaa aattattttt
     1141 tattttagaa aattttattt tattaatcaa ctaagaatat aatttaattc attaattaaa
     1201 tttattaaaa aggaataaag atgaaaaaaa ttcttgtaag tgttttaagt tcttgcttgt
     1261 tagcttcggc tttaagtgct gtatctttta aagaagatag tttaaagatt tcttttgaag
     1321 gatataaaac taaagatatg ataggaacaa aaggtgaatt taaaaatgta gaatataaat
     1381 tttctaaaaa tataaaggat ttggcaagtt atcttaaagg cgctaaagct accataaagc
     1441 caagcaatgc ttttatgggt gaaggcaatg atattataac caataatatc acaaaagtat
     1501 ttttccctgc tttattggga gatacggata ttaaagttgt ttttcaagat gtgattgcgg
     1561 gtgaaaataa aggcgttatt tcagcaaaaa ttactatgga taaaaaaagt actattgtac
     1621 ctttaactta taccatcaaa gataataaat ttgaagctaa aggacaactt gatttgcata
     1681 cttttaaaaa tggttctaaa gcattaaaag cattaagcga tgttgctgca ggacatggtg
     1741 gaatttcttg gcctttagtg gatatcagtt ttaatgctga tttagcagaa taaaaagtag
     1801 ccttagggct actttaaaat acaatatctt cttaaattat tttcaaaaat ttcataatct
     1861 tttatatttt caagttcttg ataaatttca ctacctttcc ataaaataaa aactgtattt
     1921 tcatctttta gatttttaca aatttcaagc aaaggcttga catccattaa ggctcttgaa
     1981 gtgatgatat cagctttaaa ggtattcttg tattcttgaa ctttttcttt gtaaatatgt
     2041 aaatttggaa gttcacattc tatttttaat gtccgcaaaa aggcagcttt tttgggattg
     2101 ggttcgaaaa gatgaaaatt gctttgcagt aaaaaagcta aaaatacagc tggaaatcct
     2161 gcgccacttc ccatatcggc aatatttttt gctttagaaa aatcataaaa atctaaaatt
     2221 ttaatactat caaagatatt ttcatctata tttt
//
LOCUS       DARBAR010000156         2241 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.156, whole genome shotgun sequence.
ACCESSION   DARBAR010000156 DARBAR010000000
VERSION     DARBAR010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2241
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.156"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            165..368
                     /locus_tag="SB815_001685"
     CDS             165..368
                     /locus_tag="SB815_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907391.1"
                     /translation="MQEAKSILDVLSFRKTEEKEELRKCFNFSDEVFEKGLNFLHTND
                     EISIEAVSDGLFEKTIISIKVSK"
     gene            365..649
                     /locus_tag="SB815_001686"
     CDS             365..649
                     /locus_tag="SB815_001686"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907392.1"
                     /translation="MKQAIKQKLGVSSITEAGLKLNLAHNVLNSWLSNNLTNAKVEIA
                     LLKLGLREDERLIKRIEKLKSEYKKNEIRKQAYEKSMKEIKALLEEIEAA"
     gene            1080..1810
                     /locus_tag="SB815_001687"
                     /pseudo
     CDS             1080..1810
                     /locus_tag="SB815_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002801548.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phage regulatory protein/antirepressor Ant"
     gene            1863..2150
                     /locus_tag="SB815_001688"
     CDS             1863..2150
                     /locus_tag="SB815_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907393.1"
                     /translation="MPSDRVEIELFTGFYDKKGNKIYEGDILYSFEGCSEDEAFKYKV
                     VFKEGAFYLVECGDDGEEWDEDLLSEFCLEELEIVGNIHENAELLNENKPS"
BASE COUNT          903 a          243 c          402 g          693 t
ORIGIN      
        1 attaatttat aagaattttt aagtcaattt ttgtattttg acttgacaaa taattcaaaa
       61 tgaattataa ttctacacat aattaatttt acaaaataaa ataattattt aatcaaagca
      121 taaagtatgc caagttttaa cttagaaagt ttttaggagt aaagatgcaa gaagcaaaat
      181 caattttaga tgttttaagt tttagaaaaa ctgaagaaaa ggaagagctt agaaagtgtt
      241 ttaattttag tgatgaggtt tttgaaaaag gacttaattt tttacataca aatgatgaga
      301 taagcataga agctgtgagt gatggacttt ttgaaaaaac gattatcagc ataaaggttt
      361 caaaatgaaa caagctataa agcaaaaatt aggtgttagt agcataacag aagcagggtt
      421 aaaactaaat ttagctcaca atgtcttaaa tagttggctt tcaaataatc ttacaaatgc
      481 aaaggttgaa atagcccttt taaaactggg tttaagagag gatgaaagac taataaaacg
      541 catagaaaag ctaaaaagcg agtataaaaa gaacgaaatc cgtaagcaag cctatgaaaa
      601 atctatgaaa gaaattaaag ctttattaga agagatcgag gcggcttaaa agcctcatta
      661 agcacattta tctaagcact ttaaaatcgc attttttaaa gtgatagcaa aaagtgtgct
      721 taaagggttt ttgcaaaagt tgcgttaagt ggataaacgc ctacaattgc gaactttaaa
      781 ggtttgatat tttttagatt gcttcactag ccttttatgg ctagtgtgtt cttatattca
      841 ttgcactcac aggcgacggt gtggaaagtg ggctttttta aagctttgtt aatttaccaa
      901 aataccaaaa gtcttttaga ctttgaatgc aggtcctatg ttttggttag tgtttaaatg
      961 aggactaatg agaattcttt taaagtcctc aaatttattt atttcttctt aaattaagcc
     1021 atcttttaag atggctctta agtcttcatt taaacactaa aaaattttaa ggagaataaa
     1081 tgaatttaga actttttaaa aaagatgaaa acaaagaaat aagcttaact tctttagaga
     1141 tagcagagct tacaggcaag gagcatttta atgttataag agatatagaa acttacttag
     1201 aaaaagtggt tgaaggggtg tcttcaaatt tgaagacacc taccaaaaca cacaaaataa
     1261 gcaatcttac aagtgttacc gcttaccaaa aagagaagta ttgattttag tgagtggata
     1321 tagtgttgag ctaagagcaa agataatcga tagattagaa tacttagaaa atgagcttaa
     1381 aaaacaaagt tataaaccgc tttcattaaa agaaagtttg caaatgcaat tagaactttt
     1441 agagagaaat gaaaagcttc aaattgaaaa tgtaaattta aaaaatgaag ccaaagaaaa
     1501 cgcaccactt attcactttg caaatcgtat aaaagatact aatgatgcta ttttaataag
     1561 agatttcgca aaaatacttt atgaaaaaaa taaaattgaa attggcgaga aaagactttt
     1621 taagatcttg cgtgaaaaag gatttttaat gagtgataat aaaccttatc aaaaatacat
     1681 cgaacaagga ctttttaagg taagtgaaac gactgttagc accatcaacg gcgatagact
     1741 tgtaagcacg acaaaaataa caggtaaagg gcaaatagcc attttaaaag agattttgaa
     1801 agcaagttga tatagattta agcgaatatg gagacaatga aacttttaaa gatgaaattc
     1861 aaatgccaag cgatagagtt gaaatagaac tatttacagg attttacgat aaaaaaggaa
     1921 ataagattta tgaaggagat attttatatt cttttgaagg ttgttctgaa gatgaagctt
     1981 ttaaatataa agttgttttt aaagaaggag ctttctattt agttgaatgt ggtgatgatg
     2041 gtgaagaatg ggatgaagat ttactaagtg aattttgttt agaagaacta gaaattgtgg
     2101 gcaatatcca cgaaaatgcg gaattattaa atgaaaataa accatcttga tttatttagt
     2161 ggcataggtg gttttgcttt ttgaactaat aaaataaggt ttaaatatgg ataagaattt
     2221 aaaaaaaatt acagaattaa a
//
LOCUS       DARBAR010000157         2213 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.157, whole genome shotgun sequence.
ACCESSION   DARBAR010000157 DARBAR010000000
VERSION     DARBAR010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2213)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2213)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2213
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.157"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(43..972)
                     /locus_tag="SB815_001689"
     CDS             complement(43..972)
                     /locus_tag="SB815_001689"
                     /inference="COORDINATES: protein motif:HMM:NF012801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG0907394.1"
                     /translation="MVALYGENEYFITDDLIFTTGLRYIYSNLFDSEFTPRIYLVYHL
                     NDNIAFKGGVSKGYKTPSAKQLTNGYYNYANGNALFGNPDLKPEESINYELGADFRVF
                     DFAHYSITGFITDFTNQISSEYLTGMQNGINCSNGTVCKRPINLGKTQTKGIEFAFNT
                     KTYNGFSLNSSYTFMDNRYKDSQKNWFGGDRIENLPRHIAMLKLNYERGKFNSYIKTR
                     ARLDTIAKARVGGNGSLPWQKYKPFYIVDLGINYKINKQSSLSFAVQNLFDKNFFDPQ
                     VTRWDGANPAGYANRYQDYTEGRSFWLSYKYDF"
     gene            complement(1000..1539)
                     /locus_tag="SB815_001690"
     CDS             complement(1000..1539)
                     /locus_tag="SB815_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HEG0907395.1"
                     /translation="MIEDTLSISARLKYYDKAASDLKWPTPVWNNNNQKPDNYQQRPD
                     NYQIAIHSPGAFTSLGFGSRLNWTVDDKNNIYFDIERYINEISVNSISSRAIKSEKQL
                     FKDNIVLNHDGNYDFDSTNSYLQYGSTKDKELHSQIWVGEGKVVLPWNLGQYGNLVNT
                     FGARIDYEMLKNDQASAGS"
     gene            complement(1548..2135)
                     /locus_tag="SB815_001691"
     CDS             complement(1548..2135)
                     /locus_tag="SB815_001691"
                     /inference="COORDINATES: protein motif:HMM:NF019335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor plug domain-containing
                     protein"
                     /protein_id="HEG0907396.1"
                     /translation="MTQIKNMKFKKSLLCFLILSGALLKAEETYQLNDVVVSASGFEQ
                     DLVDAPASISIITKEELEKKPIKDIGEAIGDIPGVDVTMDKTGTYDFSIRGFGSSYTL
                     VLIDGKRQSVANGFYTNVFKGSESGYLPPLSMIERIEVIRGPASTLYGSDAVGGVINI
                     ITKKNPDKIEANIEFNTLLQQHSNHYGNAGVLMLM"
BASE COUNT          752 a          412 c          273 g          776 t
ORIGIN      
        1 ttgctttttt gaaaatataa aggtgattaa agccttaaaa aattaaaaat catatttata
       61 acttaaccaa aaacttcttc cttctgtata atcttgatag cgatttgcat atccagcagg
      121 attagcccca tcccatcttg taacttgcgg atcaaagaaa tttttatcaa aaagattttg
      181 cactgcaaaa cttaagctag attgcttatt gattttataa tttatcccta aatctactat
      241 ataaaaaggc ttatattttt gccatggcaa actaccatta ccaccaactc ttgctttagc
      301 tatagtatcg agtcttgctc gtgtttttat ataggaatta aatttacctc gctcatagtt
      361 taattttaac attgctatat gccttggtaa attttctatt ctatcaccac caaaccaatt
      421 tttttgacta tctttatagc gattatccat aaaagtataa cttgaattta ggctaaaacc
      481 attgtaagtt ttggtattaa atgcaaattc tataccttta gtctgtgttt ttccaagatt
      541 aataggacgc ttacaaacag tgccattgct acaattaata ccattttgca tacctgttaa
      601 atattcacta ctgatttgat ttgtaaaatc agtaataaat cctgtgatag aataatgtgc
      661 aaaatcaaat accctaaaat cagcacccaa ttcataattt atactttctt ctggttttaa
      721 gtcagggttt ccaaaaagag cattgccatt ggcataatta taatatccat ttgtcaactg
      781 cttggcagaa ggagttttat agccttttga aacacctcct ttaaaggcta tattatcatt
      841 taagtgataa accaaataaa tcctaggggt aaattcagaa tcaaacaaat tgctataaat
      901 ataacgcaaa cctgtagtaa aaatcaaatc atcggttata aaatactcat tttccccata
      961 aagcgcaacc atggtttgat caagattttt acctcttatt taactacctg cgcttgcttg
     1021 atcatttttt aacatctcat aatcaatcct tgcaccaaag gtatttacta aattaccgta
     1081 ttgacctaaa ttccaaggta aaacaacctt accttctcct acccaaattt gactatgtaa
     1141 ttccttatcc ttagtgctac catattgtaa atatgagtta gttgaatcaa aatcatagtt
     1201 accatcatga tttaaaacaa tattatcctt aaaaagttgt ttttcacttt taatagccct
     1261 actacttata gaattcactg aaatttcatt aatatatcgc tctatatcaa aatatatatt
     1321 atttttatca tctactgtcc aattaagcct agaaccaaaa cctaagctag taaaagcacc
     1381 tggactatga atagcaattt ggtaattatc aggtctttgt tggtaattat caggtttttg
     1441 attgttatta ttccaaaccg gtgtaggcca ttttaaatca gaagctgcct tatcataata
     1501 cttcaacctt gcagaaattg ataatgtatc ttcaatcaaa ggagttgcta cataagcatt
     1561 aaaacgcccg cattgccata gtgattagag tgctgttgca aaagagtatt aaattctata
     1621 tttgcttcga ttttatcagg atttttcttg gtgataatat ttatcacacc gcctacagca
     1681 tcactgccat aaagtgtaga agctggacca cgtataacct cgatacgctc tatcatagat
     1741 aaaggcggca gatatcctga ctcactgcct ttaaaaacat tagtataaaa cccatttgca
     1801 acactttgac gttttccatc aattaaaact agagtataag aactaccaaa acctcgtatg
     1861 ctaaaatcat aagtgcctgt tttatccata gtcacatcta cacctggaat atctcctata
     1921 gcctccccta tatccttaat tggctttttt tcaagctctt cttttgtaat gatagaaata
     1981 ctagcaggcg catcaaccaa atcttgttca aaaccactag cgctaaccac aacatcatta
     2041 agttgatatg tttcttctgc ttttaacaaa gctccagata aaattaaaaa acacagtaaa
     2101 ctttttttaa atttcatatt tttgatttga gtcaaattaa ttcctttaaa aaaaattatt
     2161 ttgatattta aaatcatttt tggagtataa aaaaagaata cttttaatta act
//
LOCUS       DARBAR010000158         2148 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.158, whole genome shotgun sequence.
ACCESSION   DARBAR010000158 DARBAR010000000
VERSION     DARBAR010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2148)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2148)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2148
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.158"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(37..1191)
                     /gene="legC"
                     /locus_tag="SB815_001692"
     CDS             complement(37..1191)
                     /gene="legC"
                     /locus_tag="SB815_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HEG0907397.1"
                     /translation="MFEKEISFIKSLFNQENIALHEPCFIGNEKKYLLECIDNGFVSS
                     VGEFVTRFEEALKEKTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKDNLSYNKTTHKPIKACVIMHT
                     FGLSAHIKAIKELCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKIPHPYEYDHDRIAYNYRLCNINAAILLAGLENLE
                     LFLENKRELAKIYKDFFKNHDKCKFIDEKSNEKSNFWLNTLLFKDENLRNIFLEECLK
                     NNIFVRPIWKSLPSLKAFQNCQSNELINTKNLEKRLVNLPSSVRIANKKE"
     gene            complement(1184..2146)
                     /gene="legB"
                     /locus_tag="SB815_001693"
     CDS             complement(1184..2146)
                     /gene="legB"
                     /locus_tag="SB815_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038816896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HEG0907398.1"
                     /translation="MLVTGADGFIGSHLCESLVKKGFKVRALSQYNSFNFWGHLEKSS
                     FLKDMEVISGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGTLNM
                     LEAAKKNEISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMMALSYYNS
                     FNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDTCEG
                     FISLLNLKHFGEVYNIGSGVEYSMQEVLDLIQKILDSKVKIIQDEQRLRPKNSEVFRL
                     CCDANKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
BASE COUNT          640 a          361 c          354 g          793 t
ORIGIN      
        1 atttttttaa tgctttgaat taaattttgc aacgcatcat tcctttttat ttgctattct
       61 aacgctacta ggtaaattaa ccaaacgttt ttctaaattt ttagtgttta taagctcatt
      121 gctttgacag ttttgaaaag cttttaaact cggtaagctt ttccatatag gacggacgaa
      181 aatattattt ttcaagcatt cttctaaaaa gatatttctt aaattttcat ctttaaaaag
      241 caaggtattg agccaaaaat tgcttttttc attgcttttt tcatcgataa atttacattt
      301 atcgtgattt ttaaaaaaat ccttgtaaat tttagcaagt tctcttttgt tttctaaaaa
      361 aagttctaaa ttttcaagtc ctgcaagcaa gattgctgcg tttatattgc aaagacggta
      421 attataagct atcctatcat gatcgtattc gtaaggatgg gggattttag ctgtggtgct
      481 aaggtgtctt gcaagtttag ctaaattttc atcatcgctt aatatcgccc caccgcatcc
      541 acctgtgatg attttattgc cattaaaact taaaattcca cactttccaa aagtgcctaa
      601 ggccttgttt tcataggtgc ttcctaaggc ttctgcggca tcttcaatta aaaggatgtg
      661 gtatttttca caaagctctt tgatggcttt tatatgagcg cttaaaccaa aggtgtgcat
      721 aataacacaa gctttgatgg gtttgtgtgt ggttttgtta tagctaagat tatctttttg
      781 ataagtttga ttttctaaaa aatgctctaa agccttagga cttaaactta gagtgttttc
      841 atctatatct aaaaaaacgg gttttgcacc tgtataagcg atagcattgg ccgtagcgac
      901 aaagcttatg ctttgagtga tgacttcgca gttttcatcg atgccattag ctagtaaagc
      961 gatatgaaga gctgctgtgc ctgtatttgt agcgatgaca aagcgtgctt tggttttttc
     1021 ttttaaagct tcttcaaaac gcgttacaaa ttctcctacg cttgaaacaa aaccgttatc
     1081 gatacattct aagagatatt ttttctcatt gcctataaag caaggctcat gtaaggcgat
     1141 attttcttga ttaaaaagac tttttataaa agaaatttct ttttcaaaca ttataaagct
     1201 cacttttata attttctaaa ttttctttaa aatactctat gctttgtctc aagccttctt
     1261 ctagacttat tttgctttgc caatttgtag cttttttaag cttgtttgca tcgcaacaaa
     1321 gtctaaaaac ttcgctattt ttaggacgca atctttgttc atcttggatg atttttactt
     1381 tagaatctaa aattttttgt atgagatcaa gtacttcttg catggagtat tccactcctg
     1441 agcctatatt ataaacttct ccaaaatgtt ttaaatttaa aagagagata aaaccctcgc
     1501 aagtatctag cacaaaattt aaatcccttt tagggcttaa atctcctagt ttgatttcct
     1561 ttgctccact taaaatttgt gtgatgatgg taggtatgat agcccttgcg ctttgtcttg
     1621 gtccataggt gttaaaaggg cgtgcaatat tgacatttaa attaaaagaa ttataataac
     1681 tcagcgccat catatctgca gcgattttgc ttgcagaata agggctttga ggttgtaaag
     1741 ggtgtttttc atcgataggt acataaaagg ctgtgccata aacttcgctt gttgaggtgt
     1801 ggataaaatg tgaaatctcg ttttttttag ctgcttcgag catatttaaa gtgccattga
     1861 cattggtatc cacatagctt tgtggggctg tgtaggagta ggggatagcg attaaagcac
     1921 caagatgaaa gatcgcatct atatttttgg tgattttttc gcaaaaaaaa ctgtctctta
     1981 aatctccact tataacctcc atgtctttta aaaaagaact tttttctaaa tgtccccaaa
     2041 aattaaaaga attatactga cttaaagctc tgactttaaa accttttttg accaaacttt
     2101 cacaaagatg agaacctata aaaccatcag cacctgtaac taaaatat
//
LOCUS       DARBAR010000159         2100 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.159, whole genome shotgun sequence.
ACCESSION   DARBAR010000159 DARBAR010000000
VERSION     DARBAR010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2100
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.159"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..870)
                     /locus_tag="SB815_001694"
     CDS             complement(<1..870)
                     /locus_tag="SB815_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEG0907399.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENDEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIE"
     gene            complement(867..>2100)
                     /locus_tag="SB815_001695"
     CDS             complement(867..>2100)
                     /locus_tag="SB815_001695"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEG0907400.1"
                     /translation="CKKVVAKLKENFFQDEISKDKLLLEIKKEIKTFYRKDLQSVINA
                     SGVVIHTNLGRSVIHEELYEACKDIICNYSNVEFDLENGKRGSRYALVLEKLKMLFEC
                     EDALVVNNNAAAVFLVLNSLCYDKEVISSRGELVEIGGSFRVPEVIKAAGVKLCEVGT
                     SNKTHLKDYEQAINENTALILKTHKSNFALMGFHSEVNIKDLHELAKEKELLSYYDLG
                     SGWCENLNEKLIKNEPKIRKLVQECDILSFSGDKLFGSVQAGIILGKKELIEKLKQNQ
                     LLRMLRVDKLTLSFLNESLKAYLQKDYEKIITLKLLNDDLSFIEKKALRVQKELKFQT
                     QLKKSKSLVGGGSMPDKSLDTYILTFQGDALKLQTRFRKENIIGRIENDEFVLDFRTI
                     RENELQKLILTINQMENL"
BASE COUNT          647 a          351 c          251 g          851 t
ORIGIN      
        1 ttctatttgt cttgaaccta cacaaaaaat cattttgcta ttttgtaaat tttttgcttt
       61 aactaaagca tcacattctt taaaggcttt aaaataacct tttttactta gcaaataacc
      121 ttttttcaac tctttataat cacaatttaa acttaaagcc acacggttac aagctttgat
      181 ttgctctaaa ttagtatcgt ggttttgtat atttttaaca atgagttctt tttgagtgtc
      241 taaacagatg attttttcat ttaaagtgat gcttccttca ttaagactgc ctgtaacgac
      301 agttcctatg ccttttagag aaaaaactct atcgatataa taatgaaaaa tcagttcttc
      361 atcgttttct ttgttttcta tggtataaag ataatttttt aattcttcta tgccttgatt
      421 attttttata ctggtgtgaa atacttttaa aatgggataa tctaaatttt ttaactcttc
      481 taaaatttct acactttttt gctctatatt ttcacaaaga tcacatttgc taagcactaa
      541 aatgatattt ttaatatcaa gaatttttaa aatttctaaa tgttctaaac tttgttcttt
      601 taaaccttcg ttaatatcta cgacaaataa acaaacacta aagccaaaag ctccacttac
      661 catagtttta accaaatctt tatgtcctgg aacatcgata aaagaaatgt ttttatcttt
      721 taatttaaga tttgaaaaac ttaaattaat ggtgatttgt ctttcttgtt cttcttttaa
      781 actatcgcct tcaaaaccat ttaaagcttt aatgagtgaa gtttttccat gatcaatatg
      841 tcctgcggtt cctataataa cagatttcat aagttttcca tttgattgat tgtaagaata
      901 agtttttgaa gttcattttc tcgtatagtt ctaaaatcaa gaacaaattc atcattttca
      961 atgcgtccta tgatattttc ttttctaaat cgagtttgta gttttaaagc atctccttga
     1021 aaagttagta tataagtatc taaactttta tcaggcatag aacctcctcc tactaaactt
     1081 ttgctttttt taagctgggt ttgaaatttt aattcttttt gcactcttaa agcttttttc
     1141 tctataaagg ataagtcatc atttaaaagt tttaaggtaa taattttttc ataatctttt
     1201 tgtaaataag cttttaagct ttcgtttaaa aaagataggg ttaatttatc cactcttagc
     1261 attcttaaaa gttgattttg tttaagtttt tctatgagtt ctttttttcc aagtataatg
     1321 cccgcttgta cgctgccaaa aagtttatct ccgctaaaac ttaaaatatc acattcttgc
     1381 acgagttttc tgattttagg ttcattctta atcagctttt catttaaatt ttcacaccag
     1441 ccagaaccta gatcataata actcaaaagc tctttttctt ttgctagttc atgtagatct
     1501 tttatattta cttcactgtg aaaacccata agagcgaaat tagacttgtg ggtttttaaa
     1561 attagagcgg tattttcatt gatagcttgt tcatagtctt ttaagtgtgt tttattacta
     1621 gttccaactt cgcaaagctt tacacctgca gcttttatca cttcaggcac acgaaaactt
     1681 ccgccaattt ctacaagttc tcctcttgag cttatgactt ctttatcata acaaagagaa
     1741 ttaagcacta aaaaaactgc cgcagcgttg ttattgacca ctaaagcatc ttcacattca
     1801 aaaagcattt taagtttttc tagtaccaaa gcatagcgag agcctctttt tccattttct
     1861 aaatcaaact ctacattaga ataattacaa atgatatctt tacacgcttc ataaagttct
     1921 tcatggatta cacttctacc aaggtttgtg tgtataacca ctccgcttgc attaatcaca
     1981 ctttgtaaat ctttgcggta aaaagttttg atttcttttt tgatttctaa aagtagttta
     2041 tctttagaaa tttcatcttg gaaaaaattt tcttttagtt ttgcgacaac ttttttacaa
//
LOCUS       DARBAR010000160         2066 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.160, whole genome shotgun sequence.
ACCESSION   DARBAR010000160 DARBAR010000000
VERSION     DARBAR010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2066
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.160"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            109..2040
                     /locus_tag="SB815_001696"
     CDS             109..2040
                     /locus_tag="SB815_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG0907401.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGALPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEEYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFAKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
BASE COUNT          820 a          241 c          372 g          633 t
ORIGIN      
        1 ctttttttag taaagaaaat tttaaatata cataaaagtt atcttgaaat ttctagcact
       61 ttaggttatg gttctagttt tagctttaaa ctcagtcaag gataaaaaat ggctcttata
      121 gatttaattg aagcttcaaa aaaatttgga gacaaaatag ttttaaatga agtaaatttt
      181 agcgcaaacg agggagaaaa gattgctatt ataggcaaaa atggagaagg aaaatctact
      241 tttttaaaaa cgcttttagg cgcacttcct ttagatagcg gtagaataat aagacaaaat
      301 ggaaaaagca tagccatgct ttcacaaacc gttgatttta atgcaaattt aagcgtaaaa
      361 gaagccatca agcaagagct tgtagaaatt tacaatacct tagaagaata tgaaatactg
      421 cataaaaaat tagaagaaga tcctagtaat aaagattatc ttcaaaaaat agatacgctt
      481 atgactttga ttgatagtaa agatgcttgg agtatagaat ctaaaataat acgcgtttta
      541 aaagaattta gtttacttga gtatgaaaat cgcattatat ctactttaag tggtggagaa
      601 atacgccgcg ttgggctttg catactttta ctaaaaaatc ctgatatttt attgcttgat
      661 gaaccaacta atcatttaga tgtatatatg acaagctttt tggaagaatt gctaaaaaat
      721 tcaaagatgt gtgtgatttt tatttcccat gatagatatt ttattgacgc tatagcacac
      781 aagtgtgtag aagtagagca gggtaagctt agtattttta aaggcggata tgcaaactat
      841 ttagagaaaa aaacacaaat tttgcaaagc cttgctaaga gccatgaaac tcttttaaag
      901 caattaaaaa gcgaagaaga atggcttaga agaggggtta aagcaagact taaaagaaat
      961 gaaggacgaa aagaacgcat ttttaaaatg cgtgaagaag cgaaaaaaaa tcctggggca
     1021 atcaaacgct taaaacttga aatttcaaga gcggctttaa attttaatgg agaaaaaacg
     1081 atcaatcgta aaaaaatgct ttttgagctt aaaaatataa gcaaaaatat aaacaataaa
     1141 aatcttttta aagatttttc aacgcgtatt ttacaaggtg aacgcatagc tatcgtagga
     1201 agaaatggtt gtggaaaatc aacattgtta aaaattcttc tagggcaaat aaaacaagat
     1261 agcggtgaaa taaaacgcgg agagcttaag ataggatatt ttgatcaggc tagaagcttg
     1321 gtaaattctg ataaaagctt gcttgaaatt ttttgtccca atggtggaga tagggttgaa
     1381 gttcgtggta aaaatatgca tgtttatgga tatttgaaaa attttctatt tcctaaggaa
     1441 tttttagata aaagcgtggc tcttttaagc ggcggagaga aaaatcgcgt tgctttagcc
     1501 ttgctttttg ctaaagaata tgatgttttg attttagatg agccaactaa tgatcttgat
     1561 atagctacga ttaatatatt agaagaatac ttacttagtt ttgaaggggc tattttgcta
     1621 gtatcacacg atagatattt tgttgataaa atcgcaacaa aactttatgc ttttgaggga
     1681 aatggatata taaatatttt acacactctt tatactgaat atcttgaaaa tgaaaaagaa
     1741 attgaagaat tggataattt tgctttagag cttcaaaccc aagagcaaaa taataaccaa
     1801 aaagaaaaaa gctccaaaaa attgagctac aaagaaaatg agatattaaa aaaccatcct
     1861 gaaaaaatag attttttaga gcaaaagata gctaaattaa atcaagattt atccgatcca
     1921 aatgtatatc aagaaatagg tattaacaag ctttatcaag agcttgaagt aatgcaaaaa
     1981 gaacttgaaa ttctagaaaa tgagtatttt ttagtattag agaaaagcga gaatttataa
     2041 ttaaagagat tttatatttt tttact
//
LOCUS       DARBAR010000161         2053 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.161, whole genome shotgun sequence.
ACCESSION   DARBAR010000161 DARBAR010000000
VERSION     DARBAR010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2053)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2053)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2053
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.161"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..362
                     /locus_tag="SB815_001697"
     CDS             <1..362
                     /locus_tag="SB815_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEG0907402.1"
                     /translation="ILKKIANVDTIKELSDVLNINYATFNTWATRGEIPFKRIKEFSE
                     KLGVNIDTIINGNINTKGNENVIVQGKNNVVNFQKNSKYNDKFQEFLALYEKYGNEAL
                     LDQFINKLENLKKIIEE"
     gene            366..683
                     /locus_tag="SB815_001698"
     CDS             366..683
                     /locus_tag="SB815_001698"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907403.1"
                     /translation="MEIINTLIKFFNSFGVFVLLGIAIIVLWILSIREKNRKEREVYE
                     AIRREEVSRISDGVASGIVRIFNDKSFIQALNNGVSIEVKINVDGSQNIIINGNGNQI
                     QRV"
     gene            685..1665
                     /locus_tag="SB815_001699"
     CDS             685..1665
                     /locus_tag="SB815_001699"
                     /inference="COORDINATES: protein
                     motif:HMM:NF012743.1,HMM:TIGR00573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit epsilon"
                     /protein_id="HEG0907404.1"
                     /translation="MENYDIDIYGNPIKVKKPSREFKGQSLIYFPKSYVVIDLETTGF
                     DPKCNEILEIVALRYENNEKIAEFSKLIKVSFLPSFITEFTGINEDMIKNCNDISQTL
                     KEFDDFLKSGDILVAHNAHFDINFLYDNFMCYLNKPFSFDFVDTMRLSKLINQELAHH
                     RLKDLCNQYNICYENAHRGEKDCELTHLCLMELKKTAFDNSLIENDVLVNNGLKTQIR
                     QTQTKAKDIQAKIQEFDISHPLYNQNCVITGILGRFTRSQAMQIIADLGGINQDSVTK
                     KTNILILGDNDYRAMIKGGISNKLKRARELILKGQDLKIISENVFYDMIF"
     gene            1675..>2053
                     /locus_tag="SB815_001700"
     CDS             1675..>2053
                     /locus_tag="SB815_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907405.1"
                     /translation="MQLSLFDENNLKDLGIQSIKAYEEKNEKKLKDLIFKINCVLNLD
                     SQKDLVLQIRSIYIEIYKNFLKDEEIKNLTLGFVIKLSLIYDKSVLEELKKINISNNF
                     LQDVLKMDLQNFSKEIKLFVKENL"
BASE COUNT          848 a          219 c          328 g          658 t
ORIGIN      
        1 aaatattgaa aaaaattgct aatgtagata ctataaaaga actaagcgat gtgcttaata
       61 taaattacgc tacttttaat acttgggcta caaggggaga aattccattc aaaagaatta
      121 aagaattttc agaaaaatta ggcgtcaata tcgatactat aattaacgga aatattaata
      181 caaaaggaaa tgaaaatgtc atagtgcaag gaaaaaacaa tgttgtaaat tttcaaaaaa
      241 acagtaaata taatgataaa tttcaagaat ttttagcctt gtatgaaaaa tatggcaacg
      301 aagccttact agatcaattt atcaataaat tagaaaattt aaaaaaaata atagaggagt
      361 aaaaaatgga aattataaat actttgatca aattttttaa ttcgtttggc gtttttgttt
      421 tactaggaat cgcaataatc gttttatgga ttttatccat aagagaaaaa aatagaaaag
      481 aaagagaggt gtacgaagcc ataagacgcg aagaagtttc taggataagt gatggcgtag
      541 ccagtggaat agtaagaatt tttaatgata agagttttat acaagctcta aataatggag
      601 tttccataga agttaaaatt aatgttgatg gaagccaaaa tatcattatt aacggcaatg
      661 gcaatcaaat ccaaagagtg tgaaatggaa aattatgaca ttgatatcta tggaaatcct
      721 attaaagtta aaaagccaag tagagagttt aaagggcaaa gtttaatcta tttcccaaaa
      781 tcttatgtag ttattgattt ggaaactaca ggatttgatc caaaatgtaa tgaaatttta
      841 gaaattgttg ccttgcgtta tgaaaacaat gaaaaaatag ctgagttttc aaaacttatc
      901 aaagtttctt ttttacctag ttttatcaca gaatttacag gcattaatga agacatgatt
      961 aaaaattgca atgatatatc tcaaacatta aaagaatttg atgatttttt aaaaagtggt
     1021 gatattttag tcgctcacaa tgcacatttt gacattaatt ttttatatga taattttatg
     1081 tgctatttaa acaagccctt tagctttgat tttgttgata ctatgcgctt atcaaaactt
     1141 attaatcaag agttagcaca tcatcgctta aaagatttgt gtaatcaata caacatttgt
     1201 tatgaaaatg ctcatcgtgg ggagaaagac tgcgaattaa cacatttgtg tcttatggag
     1261 ttaaaaaaga cagcttttga taactcactt atcgaaaatg atgttcttgt taataatgga
     1321 ttgaaaacac aaattaggca aacccaaact aaagctaaag atatacaagc taaaatacaa
     1381 gaatttgata tttcacatcc actttataat caaaattgtg taatcactgg tatacttggg
     1441 cgatttacaa gatcacaagc gatgcaaatc attgcggatt taggtggtat aaatcaagat
     1501 agcgttacta aaaaaaccaa tatattaatt cttggagata atgattatcg tgctatgata
     1561 aaaggcggaa ttagcaataa gctaaaacga gctagagaat tgattttaaa aggacaagat
     1621 ttaaaaatca ttagcgaaaa tgtcttctat gatatgattt tttaaggaga taaaatgcag
     1681 ttaagtttat ttgatgaaaa taatttaaaa gatttaggaa ttcaaagcat taaagcatat
     1741 gaagaaaaaa atgagaaaaa gctaaaagat ttaattttta aaatcaattg tgtgttaaat
     1801 ttagacagtc aaaaagattt agttttacaa attcgtagta tttacataga aatttataaa
     1861 aactttttaa aagatgaaga aataaaaaac cttactttag gttttgtcat taaactgagt
     1921 ttaatctatg ataaaagtgt gcttgaagaa ttgaaaaaaa taaatatttc taataatttc
     1981 ttacaggatg ttttaaaaat ggatttacaa aatttcagca aagaaataaa gctttttgta
     2041 aaagaaaatt taa
//
LOCUS       DARBAR010000162         2026 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.162, whole genome shotgun sequence.
ACCESSION   DARBAR010000162 DARBAR010000000
VERSION     DARBAR010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2026)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2026)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.162"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..526
                     /locus_tag="SB815_001701"
     CDS             <1..526
                     /locus_tag="SB815_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907406.1"
                     /translation="ICLNYIDLNEEYIFTQEVDEDNKKSRITTSFLKFSRYSDFGKNL
                     IQEAEKIINKRKKISWGVIGPWFLADHVKKCGLENFVWDYKRTCQIPWCNVKIFLDNT
                     SIDISQPFLHLFSEMWRLNNMEKNTFHQMGVYGQLLKKHEIEKLYNQINTCLKTSMLD
                     NIASFLTKFFIKKL"
     gene            complement(521..1183)
                     /locus_tag="SB815_001702"
     CDS             complement(521..1183)
                     /locus_tag="SB815_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase family
                     protein"
                     /protein_id="HEG0907407.1"
                     /translation="MTLAIIPARAGSKGIKNKNLALLHDRPLLYYTINAAKNSKYVDK
                     IVLSSDGDDILEYGQTQGVDVLKRPKELALDDTTSDKVVLHTLSFYKDYENIVLLQPT
                     SPLRTNVHIDEAFLKFKNENSNALISVVECDNKILKAFIDDNGNLKGICDNKYPFMPR
                     QKLPKTYMSNGAIYIVKSNLFLNNPTFLQEKTSCYIMDEKASLDIDTTEDLKRVNNIS
                     FL"
     gene            complement(1292..2026)
                     /locus_tag="SB815_001703"
                     /pseudo
     CDS             complement(1292..2026)
                     /locus_tag="SB815_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002927700.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-N-acetylgalactosaminyltransferase"
BASE COUNT          700 a          291 c          243 g          792 t
ORIGIN      
        1 gatatgttta aattatattg atttaaatga agaatatatc tttacacaag aagtggatga
       61 agataataaa aaatcaagaa tcacaacatc ctttttaaaa ttttctcgat attcagattt
      121 tggaaaaaat cttatacaag aagcagaaaa aatcattaat aaaagaaaaa aaatctcgtg
      181 gggtgttata ggaccttggt ttttagctga tcatgtaaaa aaatgtggtt tagaaaattt
      241 tgtttgggat tataaaagaa cttgtcagat tccatggtgt aatgtaaaaa tttttttaga
      301 taatacttca atagatatca gtcaaccttt cttacattta ttttcagaaa tgtggagatt
      361 aaataatatg gagaaaaata cttttcatca aatgggagtt tatggacaac ttttaaaaaa
      421 acatgagata gaaaaattat ataatcagat aaatacttgt ttaaaaacat caatgctaga
      481 taatatagca tcctttttaa ccaagttttt tataaaaaaa ttataagaag cttatattat
      541 taactctttt taaatcctct gttgtatcta tatccaaact agctttttcg tccattatat
      601 agcaacttgt tttttcttgt agaaaagttg ggttatttaa aaataaattt gactttacta
      661 tataaattgc accattactc atataagttt ttggtaattt ttgtctaggc ataaatggat
      721 atttgttatc acaaattcct tttaagttac cattatcatc tataaaagct tttaaaattt
      781 tattatcaca ttctacaaca cttattaatg catttgagtt ttcattttta aattttaaaa
      841 aagcttcatc tatatgtaca tttgtcctta aaggagaagt gggttgtaat aaaacaatat
      901 tttcataatc tttataaaaa ctcaaggtat gcaatacaac cttatcacta gttgtatcat
      961 ctagcgctaa ttctttaggt ctttttaaca catctacacc ttgagtttgt ccatattcta
     1021 atatatcatc gccatcacta cttaaaacaa ttttatctac atactttgaa ttttttgctg
     1081 cattgatagt ataatacaac aaaggcctat catgcaaaag agctaaattt ttatttttta
     1141 taccttttga accagctcga gcaggtatta tagctaaagt cattttttta ccactcaatt
     1201 taaatttatc taatatttca cgaattactt tttcatcaag cattgtataa tttattttct
     1261 ttatttttct atgtctataa tggatttttt taaaatcttc taaagttaaa gcatccaaat
     1321 gtttttgata atcatttcta tgatatttta aagcaggaaa atgccattga agtaattctg
     1381 cttgtaagat ttttatatgt ttgggtataa tttgctgttc agaatacaat tctttcacag
     1441 ttttttcagg atcaatccac tgactttgct ttgaaaccat tctttctata aatacactat
     1501 tgcacttttg aattaacaat tgatcccctc catcgataaa accacattct cctatatttt
     1561 gaattacaat tttatctagt attaaaaaat taattcttgg aaatctaaca gcagtatttt
     1621 ttgatgccat ataaaaactc ttatataatt tttttgcatc atagtaatga tccacatcta
     1681 tttttataag ccactcatct tgcggtataa aactagctac atagttataa taactatgaa
     1741 gtttattttc ttcgctttgc ggattttcaa tttgcacctc atggggatat tttactggta
     1801 taaacgaagg gtattgtttg caaaattcca aaataatttc ttcacttcca tcagtacaat
     1861 cattatatcc tataacacct ctttgtatgg caggtaacat actttcaagt gatactctta
     1921 aagtagtggc ttcatttttt actcttataa aagcccatgg atttaaagga gattttgtat
     1981 cttttgagtt tggatcaaaa tcaaaaaaac ctttatgctt ttcatc
//
LOCUS       DARBAR010000163         1938 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.163, whole genome shotgun sequence.
ACCESSION   DARBAR010000163 DARBAR010000000
VERSION     DARBAR010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1938)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1938)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.163"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            16..984
                     /locus_tag="SB815_001704"
     CDS             16..984
                     /locus_tag="SB815_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002809984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide synthesis protein"
                     /protein_id="HEG0907408.1"
                     /translation="MYNTLTKKLSSFIPIKSTRRKLRNHIQYKLEHPKVTNYLSNNYI
                     NPFLEGKIPHFDFEKKHYFKNDKIIWQFWYQGKNQASPMIQQCFNSVQSQMKDDYTII
                     ILDKDNIKDYLDFPPFVIEKLENNFFGEKTITFFSDLLRVCLLATYGGIWCDASIFLS
                     SKIPSELCDKDFFTFERSKIKPSKEKLKKFIKSGYFSYGYFNWNDDFKVKMLSSFMIA
                     KTNNTFIQTLKDILMNYWKNEQSSENHYYFILHIIFELLKEHGFVNDIYKNMSDIECH
                     LLQFSAKEKFNSTLWEEIQKQSFLHKLTHFKSIKKDSMIDKIILQS"
     gene            complement(968..>1938)
                     /locus_tag="SB815_001705"
     CDS             complement(968..>1938)
                     /locus_tag="SB815_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG0907409.1"
                     /translation="GLSSARNVGIEYFSGEYETQYIEKENELNVFKIIGDNPQNIYKI
                     YKYKNALASDKLEISKIDYIIFLDSDNYWELNCIEECVVRMQNVDVLWFDHACIYDDG
                     IEDKGQKTRMNVFNFTQECTITPRDYAKQAIKVGSRDISFSWGGMIDFSFLKQLKLKF
                     INKIINEDIHFGMVLFASADSIYILPKRLYLCRLRANSISNHDKKVTKANVSEYFKDL
                     YEFFGENAKEAKNYLKAASRMITALELIEFFKDQKNENSQAIKEAFLPFYVKKALMIK
                     KFKKDPLNLKEKLPIIKPFIQTKIPYDLWKIWQKIKGILDKINFAK"
BASE COUNT          729 a          292 c          207 g          710 t
ORIGIN      
        1 caaaacaatt ctttaattta taatacttta acaaaaaaac taagctcatt tatacccata
       61 aaatcaacaa gaagaaaatt aagaaatcat attcaatata agctagaaca ccctaaagtg
      121 actaattatc tttcaaacaa ctatattaat ccttttttag aagggaaaat tcctcatttt
      181 gattttgaaa aaaaacatta ttttaaaaac gataaaatta tttggcaatt ttggtatcaa
      241 ggtaaaaatc aagcttcacc tatgatacaa caatgtttta actctgtaca aagtcaaatg
      301 aaagatgact acacaattat cattttagat aaagataata taaaagatta ccttgatttt
      361 ccaccatttg ttatagaaaa attagaaaat aatttttttg gagaaaaaac tataactttt
      421 ttttcagatc ttttaagagt atgcttgctt gcaacttatg gaggtatatg gtgtgatgca
      481 agtatatttt taagttctaa aattcctagt gaactttgtg ataaagactt ttttaccttt
      541 gaaagatcaa aaataaaacc tagtaaagaa aaattgaaaa aatttatcaa aagtggatat
      601 ttttcttatg gatactttaa ctggaatgat gattttaaag ttaaaatgct aagtagtttt
      661 atgatagcca aaacaaacaa tacttttatt caaactctaa aagatatttt aatgaattat
      721 tggaaaaatg agcaatcaag tgaaaatcac tattatttta tactacatat catatttgaa
      781 cttttaaaag agcatggctt tgtaaatgat atctataaaa acatgagcga tatagaatgc
      841 catttattac aatttagtgc caaagaaaaa tttaattcaa ctctttggga agaaattcaa
      901 aaacaaagct ttttacacaa actcacgcat tttaaatcta taaaaaaaga ttcaatgata
      961 gataaaatca ttttgcaaag ttgattttat ctaaaatacc ctttattttt tgccaaattt
     1021 tccaaagatc ataaggaatt tttgtttgga taaaaggttt aattataggt aatttttcct
     1081 ttaaattcaa aggatctttt ttaaattttt taatcatcaa agcctttttt acataaaaag
     1141 gcaaaaaagc ctcttttatg gcttgagaat tttcattttt ttgatcttta aaaaattcta
     1201 tcaactccaa agctgttatc atcctacttg ctgcttttaa atagtttttt gcctctttag
     1261 cattttctcc aaaaaattca tacaagtctt taaaatactc tgacacattt gcctttgtaa
     1321 cttttttatc atgatttgat atactatttg ccctcaaacg gcataagtac aatctttttg
     1381 gtaaaatata gatactatca gcactcgcaa acaaaaccat gccaaaatga atatcttcat
     1441 tgatgatttt gttgataaat ttaagtttta attgttttaa aaatgaaaaa tctatcatac
     1501 caccccagct aaacgagata tccctcgaac ctacttttat agcttgctta gcatagtctc
     1561 ttggagtgat agtgcattct tgagtaaaat taaatacatt catccttgtt ttttgaccct
     1621 tatcttctat accatcatca taaatacaag catggtcaaa ccataataca tctacatttt
     1681 gcattcttac aacacactct tctatgcagt ttaactccca ataattatca gaatctaaaa
     1741 agataatata atcaatcttt gaaatttcta gcttatcact cgctaaagca tttttgtact
     1801 tataaatttt ataaatattt tgtggattat cgccaataat cttaaaaaca tttaattcat
     1861 tttctttttc aatatattgt gtttcatatt ctccactaaa atattctata cctacatttc
     1921 tagcactact taaaccac
//
LOCUS       DARBAR010000164         1926 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.165, whole genome shotgun sequence.
ACCESSION   DARBAR010000164 DARBAR010000000
VERSION     DARBAR010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1926
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.165"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            40..1578
                     /gene="eptC"
                     /locus_tag="SB815_001706"
     CDS             40..1578
                     /gene="eptC"
                     /locus_tag="SB815_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HEG0907410.1"
                     /translation="MLRLTWFQFTFFNSLMIVLLNFNLFYFVYEKNTQNWLITFVFIV
                     AYFALVHVICSLLFIKFFTKFFSILFIISSFLSVYFISFYGVLIDSDMMQNVVQTDIK
                     EVKDLLNLKLILFVVLALLLVFYVVKVKIDYYGSFKSHIKIKIINIISGLIVVCAVLI
                     PLSKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYVRFVKAKPEFKTIANDAYRENNHTK
                     KLLVLVVGETARAANYSLGGYTKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSI
                     SKRENYSSSEFQENAMDVLYKTGVDAVWFDNNSGGCKGVCDRLAYKQKLSSDLDENLL
                     APFKEKLNHLSDQNIIVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDSEALIN
                     TYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENGIYLHGMPYAIAPSY
                     QTHIPAIFWSNDKNLMNLAKEYKGLKLSQDNLFSTLLGYFDVKTSVYEPEYDLLNPKL
                     KANP"
     gene            1575..>1926
                     /locus_tag="SB815_001707"
     CDS             1575..>1926
                     /locus_tag="SB815_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEG0907411.1"
                     /translation="MKPKYHFLNNARYALEGLFALFKNEMAFRIELCIIIPAIVFSFF
                     LKISFLEHLLLISVLILILIVEALNSAIEACVDLITNEWHEKAKIAKDCASAAVFFSV
                     LLALFVWGFILYNIY"
BASE COUNT          620 a          219 c          313 g          774 t
ORIGIN      
        1 caataaaatt aaaagcttaa atttgaaggt gggatttata tgcttagatt aacttggttt
       61 cagtttactt tttttaattc tttgatgatt gtattgttga attttaattt attttatttt
      121 gtgtatgaaa aaaatacaca aaactggctt ataacttttg tttttattgt ggcctatttt
      181 gcacttgttc acgtgatttg ctctttgctt tttataaagt tttttactaa atttttttct
      241 atattattta taatatcatc ttttttaagt gtttacttta ttagttttta tggggtgctt
      301 atagattctg atatgatgca aaatgttgtt caaacagaca ttaaagaagt aaaagatttg
      361 ttaaatttaa aattgatctt atttgttgtt ttggctttat tattggtttt ttatgttgtt
      421 aaagtaaaaa ttgattatta tggtagtttt aaatcccata taaaaattaa aattatcaat
      481 ataatatcag gtttgattgt tgtttgtgca gttttaatcc ctttaagtaa aactttcttg
      541 ccttttttta gaaactataa tgaaataaga atgtataata ctccttttta tcaaatttat
      601 gccgtatatc gctattatgt tcgttttgta aaagctaagc cagaatttaa aactatagct
      661 aatgatgctt atagagaaaa caatcacact aaaaaacttt tggttttggt ggtgggtgaa
      721 accgctagag cggcaaatta ctctttgggt ggatatacta aaaatgatac caatttttat
      781 accaaaaaag ataatgtagt cttttttgat aatttttcat catgtggaac agcaacagcg
      841 gtaagtttgc cttgtatgtt ttctatttct aagcgtgaaa attattcaag ttcagaattt
      901 caagaaaatg cgatggatgt gctttataaa acaggtgtag atgctgtatg gtttgataat
      961 aattctggtg gttgtaaagg ggtttgtgat agattagctt ataagcaaaa gctttctagt
     1021 gatttggatg aaaatttact cgcccctttt aaagaaaaat taaatcattt aagtgatcaa
     1081 aatataatag ttcttcattt gcaaggttct catgggccaa cttattataa acgctatcca
     1141 agcgaattta aaaaatttac tccaacttgt gatactaatg aactttcaaa atgtgatagc
     1201 gaggctttaa tcaacactta tgataatact ttgctttata cagactatct tttaagtgag
     1261 attataaaac tattaaaaga gcaaaaaagc tatgaaagtt ctttgtttta tctttcagat
     1321 catggtgaaa gtttgggtga aaatggtatt tatcttcatg gtatgcctta tgctatagca
     1381 ccaagttatc aaactcatat tcctgctatt ttttggagca atgataaaaa tttaatgaat
     1441 ttagctaaag agtataaagg tttaaaactt tctcaagata atctttttag tactctttta
     1501 ggatattttg atgtaaaaac aagtgtttat gaaccagaat atgatttatt aaatcctaaa
     1561 cttaaggcaa atccatgaag cctaaatatc attttttaaa taacgcaaga tatgctttag
     1621 aagggctttt tgctttattt aaaaatgaaa tggcgtttag aattgaactt tgcattatta
     1681 tccccgcgat agtttttagt tttttcttaa aaattagttt tttggagcat ttgttattga
     1741 taagtgtctt aatacttatc ttaattgtag aagctttaaa ttcggctatt gaagcttgtg
     1801 ttgatttgat tacaaacgaa tggcatgaaa aggcaaaaat cgctaaagat tgtgcgagtg
     1861 cggcagtgtt ttttagtgtg cttttagctc tttttgtttg gggctttatt ttatataata
     1921 tttact
//
LOCUS       DARBAR010000165         1911 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.166, whole genome shotgun sequence.
ACCESSION   DARBAR010000165 DARBAR010000000
VERSION     DARBAR010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1911)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1911)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1911
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.166"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(30..734)
                     /locus_tag="SB815_001708"
     CDS             complement(30..734)
                     /locus_tag="SB815_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907412.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNLVTRT
                     YQQNSQNNDIKFSIAS"
     gene            842..1204
                     /locus_tag="SB815_001709"
     CDS             842..1204
                     /locus_tag="SB815_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEG0907413.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILFCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQRETIK
                     LDLPKFEEFVKFLNSKIF"
     gene            1278..1850
                     /locus_tag="SB815_001710"
     CDS             1278..1850
                     /locus_tag="SB815_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HEG0907414.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
BASE COUNT          613 a          246 c          317 g          735 t
ORIGIN      
        1 gcataatttt tttatttaaa ttaagaattt taagatgcga tgctgaattt aatgtcgtta
       61 ttttgtgaat tttgttgata agttctagtg acaagatttt taaagtcttt atcaaaattt
      121 gaatttttat cgttgttttt tgaatcttta tctgtttttt ctaagctatt ttctgaattt
      181 ttgtcatctt tttctttatt ttcttcttct ttttctttgg cttcttcggc tttaagtttc
      241 attgcttcag ctcttgcttc aaattccatt tttgtagcat ttgctgcaac tttatagtct
      301 tgtgggctag gatcagcagg agccatagct gctgctgcga tttgtcttgc attggctata
      361 gtttcttctg gtgtgtttcc tttttgcatg ctgataggaa cttcgcccgc tgtagcatac
      421 atttgattat cagggcctct tgtgtaagta aaacttgcag cacctgctaa gccgccaccc
      481 gctgcttgat gtgcagcttc atgagccttt acatttctat cgatactttg gagttcgcga
      541 acttgagcta cttctttttg gcttagctct acgccattaa ccatttgggt ttgttcgcca
      601 tttttttctt tatcatcttt attttcacta agattttttt catctttttg agtggaatca
      661 gattgatttg ttttatcaaa agaaggtttg ctagagtagt aatcataaga gttataactt
      721 gaactaattt gcatttatcc ttctttttgt tttttaaatt tttaggaatt ttaacgcatt
      781 ttgacttaaa aatttgataa attttgtaaa ataatcataa atacaatttc aaaggaatgt
      841 aatgatttat gaaaatgatt tgatttatat agagaaagag gaggctcaag tgccttggct
      901 taaaattttt actaaagaaa tttataaaga atttagcgat tgtcctttag agttgcaaaa
      961 ggaacttttt gaaaaaattt tattttgtga aaaggctatg atagaatttt acaaacctga
     1021 aaaaatcaat atcgcctctt ttgcaaatta tgtgccaagg gtgcattttc atgttatggc
     1081 aagatttaaa gaagatgcgt tttttccaga gtgtatgtgg ggaaaacagc aaagagaaac
     1141 aataaagctt gatttgccta aatttgaaga atttgtaaaa tttttaaata gtaaaatttt
     1201 ttgattttta ttaatgattt gttatgtttt atctaataaa atttttatat tgaaaattac
     1261 tataaaaaag gaaaaaaatg aaaaaagttt tattgagttc attggttgcg gtgtctttgt
     1321 taagcacagg tttgtttgct aaagaatata ctttagataa agcacataca gatgtaggtt
     1381 ttaaaatcaa acatttacaa attagcaatg taaaaggaaa tttcaaagat tattctgcgg
     1441 tgattgattt tgatcctgcg agtgctgaat ttaaaaagct tgatgtaact ataaaaatcg
     1501 catctgtaaa tacagaaaat caaacaagag ataatcactt acaacaagat gattttttca
     1561 aagcaaaaaa atatcctgat atgactttta caatgaaaaa atatgaaaaa atcgataatg
     1621 aaaaaggcaa aatgacagga actttaacta tagctggagt ttctaaagat atcgttttag
     1681 atgctgaaat cggcggtgta gctaaaggca aagatggaaa agaaaaaata ggattttctt
     1741 taaatggaaa aatcaaacgc tctgatttta aatttgcaac aagtacttca actattactt
     1801 taagtgatga tattaattta aatatcgaag ttgaagcgaa cgaaaaataa ttttttagtc
     1861 taagagtctt gctcttagac tttgtaaatt tttatccaaa ttttcttcac t
//
LOCUS       DARBAR010000166         1910 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.167, whole genome shotgun sequence.
ACCESSION   DARBAR010000166 DARBAR010000000
VERSION     DARBAR010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1910
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.167"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..1145
                     /locus_tag="SB815_001711"
     CDS             <1..1145
                     /locus_tag="SB815_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG0907415.1"
                     /translation="GFFLHTSGEKAMERFLKEVGVVLIGAFGYEDGKRYISIFNFLIS
                     EACACNDLKFAIGILDVNCQKYDKFCFLLQNKPVLILLRDPIDSLKSFINVRHQKNGF
                     NEILKIDINNTDFDKINDRIVYVHESNGCFNPDTNQKFPSLESIKALSDTNHWMLMYN
                     IRRNKTIEFFRFNKIIYIDMMDIVGDKTLFTLEKLSKILNFSSPDKNNKIFYQQLYSP
                     LTVLLPCIIKVNNKVKIFVSNRFSVKNIQIMENCIDITDKFKEIFHENLIIFCSKDHF
                     DSLINNQTLYNVVLEYINKFLISLKKRINVEKNKEVKVDDVLDYFKKNISVAKSYKDI
                     LDEELVYIKQHRPDIVASWKYYQEFERMCKELDENNQNPSLSFSNQ"
     gene            1200..>1910
                     /locus_tag="SB815_001712"
     CDS             1200..>1910
                     /locus_tag="SB815_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEG0907416.1"
                     /translation="MLNPNSAIERVKNHLAYKLGQTVIEHRHNGGGYIALFKKLYKIK
                     KQHKKEQKIYQQIIQVFPQLKYPSLETCSDYNEALRCKFHLSYMIGEVLIKAYQNWYK
                     GGGFKLKNNIKKANKEFQIFREILKEFKELNGETLKAIQDNKQLFLKEFPRIKNILKT
                     HQDYQPILDNIFHNFNYFIKNFDLIEEWLLSDDFKEKYKKENHPYPSLLDPKKLNDEN
                     EKINYHNIPAELAWKMNLP"
BASE COUNT          781 a          200 c          261 g          668 t
ORIGIN      
        1 ttggattttt tttgcataca agtggagaaa aagctatgga gagattttta aaagaagttg
       61 gtgttgtgct tattggtgca tttggatatg aggatggtaa gcgttatatt agtattttta
      121 attttttgat tagtgaagct tgtgcatgca atgatttaaa atttgccata ggtatactcg
      181 atgtgaattg tcaaaagtat gataaatttt gttttttgtt gcaaaataaa cctgtattga
      241 ttttgcttag agatcctatt gattctttga aatcttttat taatgttaga catcagaaaa
      301 atggatttaa tgaaattctt aaaatagata ttaacaatac tgattttgat aaaattaatg
      361 atagaatagt ttatgttcac gaatcaaatg gttgttttaa tccagataca aatcaaaaat
      421 ttccatctct tgaaagtatc aaagctcttt cagatactaa tcattggatg ttaatgtata
      481 atattagaag aaataagact atagaatttt ttagatttaa taaaattatt tatattgata
      541 tgatggatat agttggagac aagactttat ttacattaga gaaattatca aaaatactga
      601 atttttcttc cccagataaa aataataaaa tattttatca gcaattatat tcaccattaa
      661 cagtattatt accttgtatt ataaaagtaa ataataaggt caaaattttt gtttcaaata
      721 gattttctgt aaaaaacata caaattatgg aaaattgcat agatatcact gataagttta
      781 aagaaatttt tcatgaaaac ttgattattt tttgttcaaa agatcatttt gatagtttga
      841 taaataatca aactctttat aatgttgttt tagaatatat taataaattt ttaatttctt
      901 taaaaaaaag gattaatgtt gaaaaaaata aagaagtgaa agtagacgat gtattggatt
      961 attttaaaaa gaatataagt gtagcaaaat cttataagga tattttagat gaggaattgg
     1021 tttacatcaa gcaacatcgt ccagatatag tagcttcttg gaaatactac caagaatttg
     1081 aaagaatgtg taaagagtta gatgagaata atcaaaaccc atctttatca ttttctaatc
     1141 aataattgaa tataattatt tcttgttttt ttgattgatt tattttaaag gaaaaaccca
     1201 tgctcaaccc aaattcagcc atagaaagag taaaaaacca tttagcttat aaactaggtc
     1261 aaactgtgat agaacataga cataacgggg gggggtatat agcattattt aaaaaactct
     1321 ataaaatcaa aaaacaacat aaaaaagaac aaaaaattta tcaacaaatc atacaagtct
     1381 ttccccaact taaataccca agtttagaaa catgttctga ttataatgaa gctttaagat
     1441 gtaaattcca tttatcttac atgataggtg aagttttaat taaggcttat cagaattggt
     1501 ataaaggagg tggatttaaa ttaaaaaata atattaaaaa agcaaataaa gaatttcaaa
     1561 tttttagaga aattctaaaa gaatttaaag aattaaatgg tgaaacttta aaagctattc
     1621 aagataataa acaattattc ctaaaagaat ttccaagaat aaaaaatatc ttaaaaacac
     1681 atcaagatta tcaacctata ctagataata tctttcacaa ctttaattat tttataaaaa
     1741 atttcgatct tatagaagaa tggttattat cagatgattt caaagaaaaa tataaaaaag
     1801 aaaaccatcc ttatccttca ttacttgatc ctaaaaaact taatgatgaa aatgaaaaaa
     1861 tcaattatca taacatacct gctgaacttg cttggaagat gaatttgcct
//
LOCUS       DARBAR010000167         1885 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.168, whole genome shotgun sequence.
ACCESSION   DARBAR010000167 DARBAR010000000
VERSION     DARBAR010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1885
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.168"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            112..603
                     /gene="fldA"
                     /locus_tag="SB815_001713"
     CDS             112..603
                     /gene="fldA"
                     /locus_tag="SB815_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HEG0907417.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWVEQIKP
                     YFA"
     gene            complement(648..1178)
                     /locus_tag="SB815_001714"
     CDS             complement(648..1178)
                     /locus_tag="SB815_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0907418.1"
                     /translation="MSKFALILSFFIALFMSACTNATFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLQTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFYF"
     gene            complement(1184..1855)
                     /locus_tag="SB815_001715"
     CDS             complement(1184..1855)
                     /locus_tag="SB815_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEG0907419.1"
                     /translation="MFAASNSEISDFYSKSIKAQFPNATVSVSNRQKVGNTGFESVIV
                     SVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEARENFTKNAKAVAQ
                     KETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDDELKNYQVNYILTPVHGKSAFEK
                     SALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFSLYEKYRSLGLSAT
                     PTIIK"
BASE COUNT          614 a          243 c          314 g          714 t
ORIGIN      
        1 caaaaatttc acacatttta ttgaaataaa acattttttg tgtgatttaa acaaaactat
       61 gttaaaatta gttccgtata aaatatcaaa tcaaattata aggagaaaat aatgtcagta
      121 gcagtaatct atggtagtgc tatgggaaat acagaaggag cggctaatac aattgcttca
      181 aaacttggaa ttagtgatgt ttttaatatc tcagatattg atgcagctaa aatgaattct
      241 tacgataaat taatttgtgg aacttcaact tggggaagtg gtgatttaca agatgattgg
      301 gatggttttg atttttcagg gcttagtctt ggtggaaaaa ctgtagctgt atttggtatg
      361 ggtgatagtg aaagttattc tgacactttt tgtggcggca tgggtaaatt agctcaaaat
      421 ttaaaagatg caggtgcaaa tttggtagga gaagtttcaa ctgatggtta tacatttgaa
      481 gcaagcgatg cggttgtaga tggtaaattt gttggacttg ctcttgacaa tgataatcaa
      541 gaagatcaaa ctgaatcaag aattgatgct tgggtagaac aaatcaaacc ttattttgct
      601 taataattct taaaatcaag agtttttata ctcttgattg tcttttctta aaaataaaaa
      661 aaactcacta tttgatttat aattttattt tctaaagata attgacagcg ttctttattt
      721 ccaagataag ctgttcttgc aagaagactt gttttttgag aattgtgatt tttagagttg
      781 atttgtaaat taacttgcat agtatagtag ttttctacca tccattctcc atcgctttcc
      841 aaaggatcaa aatcataaaa aaatcttgct gaagttgtga ttttttgagc ataagaatgc
      901 tttttcatat ctacaagatt gattaaaatt tcataatctg cattctcttt tacttctttt
      961 aagcctaaat ttttaagttt taaagccaaa tctctatcta gagtagtttg aagttgactg
     1021 ggattttgaa aggaaatttt aaaactttgt tgtttttgtg atctgataaa aatgccttca
     1081 ttgcttgttt gaataaagct ttgtgtgaaa gttgcattgg tgcaagcact cataaagagt
     1141 gctataaaaa agcttaaaat taaagcaaat ttagacatta ggtttattta ataatagttg
     1201 gagtagcgct aagacctaat gagcgatatt tttcatataa ggaaaaaact tcttttaatt
     1261 ctgcatcact tacttttgga taatttttga tatttgcatc atagtatttg tttaaaattg
     1321 cgattttttc tttatcattt tttgcttttt ttgcttcctt gtagattaga gcggattttt
     1381 caaaagcaga ttttccatgt actggagtta aaatataatt aacttgatag tttttaagtt
     1441 catcatcaat ttgagctaaa tgttctctac aataagggca ttcaggatct gaaaaaacat
     1501 aaattgcagg tttattttta tctcccaaag ctattaccat ggtttctttt tgtgctacag
     1561 ctttagcatt ttttgtaaaa ttttctcttg cttcttgaaa ttttttcatt tcatattctt
     1621 gagcataaga aattcccgtt ttcaagtcga taagatcagg ggtaataaga ctatcttttg
     1681 taaaaagaat gttttcttgt ttttgtccat ttaattcaac gcttacaata acactttcaa
     1741 aacccgtatt accaaccttt tgacgatttg atacactaac ggtagcattt ggaaattgtg
     1801 ctttaatgct ttttgaataa aaatcactaa tttctgaatt acttgcagca aacaaagatg
     1861 ctgaacagac aagaattaaa cttaa
//
LOCUS       DARBAR010000168         1752 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.169, whole genome shotgun sequence.
ACCESSION   DARBAR010000168 DARBAR010000000
VERSION     DARBAR010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1752)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1752)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1752
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.169"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            12..>1752
                     /locus_tag="SB815_001716"
     CDS             12..>1752
                     /locus_tag="SB815_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG0907420.1"
                     /translation="MLNKELEIFKKNLSSYTQSCRKFFLKQGAFSLYHSKNMDNFIKK
                     AYDIVLKDYFDDFSPPSDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPM
                     IKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKIKFES
                     IIKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNY
                     ALNFIDEKKLSELRLAGDFLLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHF
                     GANELLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDK
                     HVIFDLNLVFALGRLKYGKKDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPF
                     WTVRFLSDEEGNYSFDEQVFLMLSEFEKYEDELEILQKLKTDEKMILKLVILLSAIES
                     ENEISLAGIYRAYCSKFDLKNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSK
                     LENLENLELLYTLTWLKAKALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKE
                     LTLKRSKIFLEQDE"
BASE COUNT          657 a          172 c          285 g          638 t
ORIGIN      
        1 gagtagaaat tttgttaaat aaagaattag aaatttttaa aaaaaatctt agttcctata
       61 cccaaagttg tagaaaattt tttcttaagc aaggggcgtt tagcttatat cattctaaaa
      121 atatggataa tttcataaaa aaagcttatg atatagttct taaagattat tttgatgatt
      181 tttcacctcc aagtgataat atcccttttt gtgttttagc aagcaaagca tatgcaaata
      241 atagtctttg ttttaatgaa agtatttctt tgatttttgt ttataaagat attaaggctt
      301 ttcatttaaa acctatgatt aaggctttta tcgaaatttt aaatgatgcg catttgcaaa
      361 ttgattcggt tatcttagaa tttaatggac tttataatgc tagcaatgag cttaagactt
      421 ctataataca aactcgtttc atatgtggtt ctaggatttt atttaaaggg attaagataa
      481 aatttgagag tattataaaa gaaaataaaa atgattttgc caagcttttg ctagaaaatt
      541 ttaaagaatt tgacattcca tttataaagc aagaatttaa tatcttaaaa gattttggcg
      601 gattaaatca tttaagatcc ttggagagtt tgcttgttct ttttaagact tctccaaaaa
      661 attatgcttt aaattttata gatgaaaaaa aattaagcga gttgcgttta gctggagatt
      721 ttttactttc tttaaaatca gcgatgaatt tattaagtgc taaagatgag gatgaatttt
      781 tacttattaa tgttcatgat ttgagtgaat taatgtataa aaaagctaaa aaacattttg
      841 gagcaaatga gttgttggtt caaaaggctt tgcaaagtat gcatactata ggtttttata
      901 cacacttttt agcaaagcaa attcaagatg gattaaatca tactcttaaa caagaatata
      961 aatttaaaac tcttgtggaa gttttagaat acttattaaa acttgaagat aaacatgtta
     1021 ttttcgatct taacttggtt tttgccctag gaagattgaa atacggtaaa aaagatatag
     1081 aaaaagcttt aatacttttt gagaaaattt tttataaaag gcatagtttt tgtgttttaa
     1141 aacttttgct tgatagtgga attttaaaag atttatgtaa gcctttttgg acagttcgtt
     1201 ttttaagcga tgaagaagga aattatagtt ttgatgagca agtttttctt atgttaagtg
     1261 aatttgaaaa atacgaagat gagcttgaga tactccaaaa acttaaaacc gatgaaaaaa
     1321 tgattttaaa gcttgtgata cttttaagcg ctatagaaag tgaaaatgaa atttctttag
     1381 caggcatata tagagcgtat tgctccaaat ttgatttaaa gaatgaaatt ttagaatggg
     1441 gtcttaagat atttaaaaac aataatgcct taaaagatct tgtagaaaaa gaagatatat
     1501 acaatcctat tgttgtaagt agcttggttt ctaagctaga aaatttagaa aatttagagc
     1561 ttttatacac tttaacttgg ctaaaggcta aggctttaaa ttataatgct ttttatttta
     1621 gagttcttga taaactttta gaaaatgcaa aacaaggttt tgaagatgaa aatctacttg
     1681 aagaaagcgc aagaagagta aaaaaagaat taacacttaa aagaagtaag atttttttag
     1741 agcaagatga aa
//
LOCUS       DARBAR010000169         1508 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.170, whole genome shotgun sequence.
ACCESSION   DARBAR010000169 DARBAR010000000
VERSION     DARBAR010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.170"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            227..1291
                     /locus_tag="SB815_001717"
     CDS             227..1291
                     /locus_tag="SB815_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEG0907421.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSKEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYISKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
     gene            1281..>1508
                     /locus_tag="SB815_001718"
     CDS             1281..>1508
                     /locus_tag="SB815_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aminodeoxychorismate synthase
                     component I/aminotransferase"
                     /protein_id="HEG0907422.1"
                     /translation="MTLENYAVFGKYFYHDLKHTLKAFNHKESKKCFKFIEKYKNDFY
                     ILMLTDYELYRYFQDKNFTSKKAYLSVFAFKK"
BASE COUNT          594 a          186 c          207 g          521 t
ORIGIN      
        1 tttgaaaatt acagttttca atacaaaatt ataaatttta tatattttta ccttttatca
       61 tatcttttta tgattgatat aagatttatt taataaaaat attttaatct ttttgccttg
      121 catataaaaa caaacttttt cctaaaaaag ctttttttta ctaagttaat actaaaatac
      181 cttttctagt taaaaagcta aaattttaga tttaggaaaa gtttttatga aatacccttt
      241 agattgtgaa gaaaattttg aaaaatcatt cttattttgg ttagcaaaat atgtaaaatt
      301 taaactcaac tcactatcta acaaagagtt aaaaaatcca caagctttag cagaagttaa
      361 ttttgctctt acaaaaggtg taaaaaatat tgatgaactt gacgctctag caaaaaaagc
      421 aagaaatgct ggtttaagtg gagttaatac ttattttaat cctttaaaaa aagtatttga
      481 atatttaaat ttttataagc tttactcttt aaaacagatt gatgaagaac ttattgtaga
      541 agttttagca agtataacag gtgctttatc agatgcaagc aaaaaaaatt accgtattgc
      601 tgtgattaat ttttttgatt ttttagacaa gcaaaatgaa gaagatgaaa aagcacatat
      661 tttcgatatc aatcttaaaa actgggcagg tatagcaggt tctaaagggg taaaattacc
      721 tgaatttatg agtaaagaag agcttaaaaa atttcttgat gctattgaaa atgcagattt
      781 taaaaacaat accatacgca ataaacttat tattaaaatc atcattttta caggcatacg
      841 ggtaagtgaa gctatcaata tcaaaatggg tgatattagc gaagaaaacg atctttatat
      901 cataagaata agagctaaag gcaataaata tcgtgttgta atgataaaaa aagaacttat
      961 ttacgatttg cttaaaaatg taagtattaa ttatataagt aaagacgccc tactttttgt
     1021 caataaaaaa ggcactccac tgactcaatc ttatgtcagt cgcatagtag aacagctttt
     1081 atttcgcgca ggaattcgca aacaaaaaaa tggtgctcat atgttgcgtc atacttttgc
     1141 caccctgctt tataaaaagc aaaaagattt agttttagtt caagaagctt tagggcatgc
     1201 aagtttaaat acctcaagaa tttacactca ttttgataat gataaattaa aacttgccgc
     1261 acaggttgca aaggaattaa gtgactcttg aaaactatgc tgtttttggt aaatattttt
     1321 accatgattt aaaacacact ttaaaagcct ttaaccacaa agaaagtaaa aaatgcttta
     1381 aatttataga gaaatataaa aatgattttt atattttaat gcttactgat tatgaactat
     1441 atagatattt tcaagataaa aatttcacaa gcaaaaaggc ttatttgtct gtatttgctt
     1501 ttaaaaaa
//
LOCUS       DARBAR010000170         1424 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.171, whole genome shotgun sequence.
ACCESSION   DARBAR010000170 DARBAR010000000
VERSION     DARBAR010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1424)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1424)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1424
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.171"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..236)
                     /locus_tag="SB815_001719"
     CDS             complement(<1..236)
                     /locus_tag="SB815_001719"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907423.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVN"
     gene            complement(233..964)
                     /locus_tag="SB815_001720"
     CDS             complement(233..964)
                     /locus_tag="SB815_001720"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEG0907424.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSNALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            complement(964..1353)
                     /gene="fliW"
                     /locus_tag="SB815_001721"
     CDS             complement(964..1353)
                     /gene="fliW"
                     /locus_tag="SB815_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HEG0907425.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
BASE COUNT          474 a          203 c          219 g          528 t
ORIGIN      
        1 tcattaacaa actgttcttg taaaactata ggttttaagg ctgaagtttg aagtatgatg
       61 gttttaaaaa taggcttttc atataattct tcttgaagtt tatagagtct ttcaaaaata
      121 tttaaatttt catagttttt gtaaagttga atatagtaat aaaaaatgcc aatgaaaatt
      181 aaagatatga tcgttatagc actaatgctt tctataagta tgaaagcctt tttcatttag
      241 cgctgctagc atttatggct tcaaaaaaac ttccgcgaat tcctttttgt tcgagtattt
      301 ttatgccttt tattgtaact ccgccagggg agcaaatatt ttctttgata atagctggat
      361 gttcatgttc tagtaaagca ttagagcttt taaataaaga gcgcgtaaga ttgagactaa
      421 gttcttttga caaaccttca taaactccag cattagcaat gctttctgct ataagtgcta
      481 aaaaagcagg agcgcagccg ctaatcgcca tagctgcatt catttgtatt tcattatcta
      541 atttataagc cgagccaaaa gtttttaaaa tgtctaaaat ttcattttca aaatgagagt
      601 ttttaagtat atatggtgtg gttgaagcct tgtatttagc tgctgtattg ggtattattc
      661 taacataatt ttgagctttg atggtttgta gtttttcaaa atcaacattg gctaaaacag
      721 agattaagat acgtgcttgt ccttttagca tttgagcaat attttctaaa gcataaggtt
      781 taaatgctaa aataacatct ttaccttcta tgttaaaatc tttgtaaagt aaggttttaa
      841 agccttcttt ggcgagggct tgaagttttt ctatacttct tcctactata caaatttcat
      901 aatcatcttt taacccatag gctaaggctg ttgccataga tccatttgca agtatataga
      961 gcattatttt ttaatataat tagcaatttg atcagcttga aaaaagtcgg gataattaac
     1021 tgtatctagt atcacttgta ccatagtatt attatcaaga ttaatgacta ctggagctag
     1081 aaaattcact gtcgattctt caatgctttt tgctatggct actatattaa aaattttcat
     1141 attagattca ggtgttaaag aaagaagctc ttgataataa gttggtatat caaattcata
     1201 atcaggtcta atcaaataag gattaattaa aacaaaagaa aagtctttac catcaagact
     1261 tttaagtctt acaaatactt catcgatagt tgaaaattcc atatttttgg tttcttcaaa
     1321 acctaagata gggcatttaa cagctagggt catgttttct cctcaagtta taatgtttaa
     1381 tattttaaca taaaataagc aataatcatt ccaaaatttt aaat
//
LOCUS       DARBAR010000171         1414 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.172, whole genome shotgun sequence.
ACCESSION   DARBAR010000171 DARBAR010000000
VERSION     DARBAR010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.172"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            76..282
                     /locus_tag="SB815_001722"
     CDS             76..282
                     /locus_tag="SB815_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEG0907426.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITELLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKASK"
     gene            279..734
                     /gene="bcp"
                     /locus_tag="SB815_001723"
     CDS             279..734
                     /gene="bcp"
                     /locus_tag="SB815_001723"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEG0907427.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GALGLKKNYGKEYEGLIRSTFVIDETGKIAQIYSNVRVKDHALKVLESL"
     gene            734..>1414
                     /locus_tag="SB815_001724"
     CDS             734..>1414
                     /locus_tag="SB815_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEG0907428.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSSVNKQILPVSIEARIALYKKVVLWEKKG
                     IKFEILREK"
BASE COUNT          538 a          151 c          281 g          444 t
ORIGIN      
        1 agcttttttg ttaaaaaaaa tattaggtat tttttgaaat aattatgaaa aattatcgtt
       61 aaaaaaggag aaattatgcc attagtaaat atcaaattag caaagccgtc tttaagcaag
      121 gagcaaaaag cggaacttat agctgatatt accgaacttt taagcacgaa atataataaa
      181 agtaaagaaa gagttgttgt ggttttagaa gatgtggaaa attatgacat aggctttggc
      241 ggagaaagtg tagaagctat caaagcaaag gcaagtaaat gagtttaaat ataggagata
      301 aggcacctca atttgagctt ttaaatcaag atggggtaaa aatagcatta aaagatttta
      361 ttggcaaaaa ggtgattttg tatttttatc caaaagataa taccccaggt tgcactacag
      421 aagcttgtga ttttagtgca aattatgata aatttggtgg taaaaatgcg gtgattattg
      481 gtatcagtcc tgatagcgtg gcaagtcatg aaaaatttat ctctaaattt gatttaaaac
      541 atattttact tagcgatagt gaaaaagaag ttgctaaagc ttatggagct ttggggctta
      601 agaaaaatta cggaaaagaa tacgaaggtc ttattcgttc tacttttgtt atcgatgaaa
      661 caggtaagat tgctcaaatt tatagtaatg ttcgtgtaaa agatcatgct ttaaaagtgc
      721 ttgaaagtct ttaatgctag tacatatttg ttgtagcgtg gatagtcatt attttattga
      781 agaacttaga aagacttatc ctgatgaaaa aattatagga tacttttatg atccaaatat
      841 ccatccttta agcgaatacg aactaagatt tttagatgta aaaagatctt gtgataaact
      901 tggtattaag ctttataaag gtgagtatga gtatgaaaaa tggcttaatg ctgtgcgtgg
      961 ttatgaagat gagcctgaaa agggtgcaag gtgtgaaatt tgctttgatg taagaatggg
     1021 atctagtgtt aaatttgctg ctaaaatagg agaaaaaaag cttactacta cgcttttaac
     1081 cagccctaaa aaagatttag aacagttaaa aaatgcttta caaaaagaat gtgagcctta
     1141 tggagtagag tttttagctc ctgattttcg taaaaatggc ggcactcaaa gacagtttgc
     1201 tttagcaaaa aaggaaatgc tttatcatca aaactattgc ggctgcattt atgggcttaa
     1261 aaaacaaaaa caagataaga attttattga tgaattaatg tcttctgtaa ataagcaaat
     1321 tttacctgta agtatagaag caagaatagc tctttataaa aaagtagttt tatgggaaaa
     1381 aaaaggtata aaatttgaaa ttttaagaga gaaa
//
LOCUS       DARBAR010000172         1410 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.173, whole genome shotgun sequence.
ACCESSION   DARBAR010000172 DARBAR010000000
VERSION     DARBAR010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1410
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.173"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..1137
                     /locus_tag="SB815_001725"
     CDS             <1..1137
                     /locus_tag="SB815_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907429.1"
                     /translation="LKKYASKATIFCADSSYPILAKHGIKPDYVCMLERDEIVAECFN
                     NDFGEFDKDIIFLVASLVHKKTISYLEKNQRKYILIIKGQPFARYLELDDYGYINAGM
                     SVSHMAYELAENLGNKNIILIGQDLAYAKDGQTHSQGFIHANLHNGDYERDLDKFSTT
                     AYGGNGKVQSSEIWTLFRQIFENFIAFSKSKTYNCTEGGARIESAIEKPFKELCEDLL
                     ENKKDKKFKKLQVLNTKEQVKLGLKIYQKIKKNMNLSLNFKKECKKVQKQIHNLTHGK
                     NKLSLEQINQNIDKIKEKLSNKKYLFLQEILGPTLHHEQSILTPLYLKDIKDESDKQN
                     KLFAWVYAHEALMENIIELLEVQDKRLKIAILPLQDFLEKKKAL"
     gene            complement(1168..>1410)
                     /locus_tag="SB815_001726"
     CDS             complement(1168..>1410)
                     /locus_tag="SB815_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG0907430.1"
                     /translation="TTNLDQIRADIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDF
                     AAESANFSKYNILAQSGSYAMSQANAVQQNVLKLLQ"
BASE COUNT          542 a          201 c          228 g          439 t
ORIGIN      
        1 ttaaaaaagt atgctagcaa agctacaatt ttttgtgcgg attcttctta tcctatttta
       61 gctaaacatg gtataaagcc tgattatgtt tgtatgttgg aacgcgatga aatagtagct
      121 gaatgtttta ataatgattt tggggaattt gataaagaca tcatttttct agtagcttct
      181 ttggtgcata aaaaaaccat ttcttatctt gaaaaaaatc aaagaaaata cattttaatt
      241 ataaaaggcc agccttttgc tagatacttg gagctagacg attatggata tattaacgca
      301 ggcatgagtg tatctcacat ggcttatgaa ctggctgaaa atttaggaaa taaaaacatc
      361 attctcatag gtcaggattt agcttatgcc aaagatgggc aaacacactc tcaaggtttt
      421 atccatgcta atttacacaa tggagactat gaaagggact tagataaatt tagcactaca
      481 gcttatggag gaaatggaaa agttcaaagt tctgaaattt ggacactttt tagacaaatt
      541 tttgaaaatt tcattgcttt tagcaaaagt aaaacttata attgcactga aggaggtgct
      601 aggatagaaa gcgctataga aaaacctttt aaagaacttt gtgaagattt actcgaaaat
      661 aaaaaagata aaaaatttaa aaaattacaa gttttaaata ctaaagaaca agtaaaactc
      721 ggattaaaaa tctatcaaaa aatcaaaaaa aatatgaatc tatccttgaa ttttaaaaaa
      781 gagtgtaaaa aagttcaaaa acaaattcac aatcttaccc atggaaaaaa caagctctct
      841 cttgaacaaa taaaccagaa tatagacaaa atcaaagaaa aactttcaaa taaaaaatat
      901 ctctttttgc aagaaatttt aggccctact ttgcatcatg aacaaagtat attaacgcct
      961 ttatatctta aagatatcaa agatgaatct gataaacaaa ataaactttt tgcttgggtt
     1021 tatgcacacg aagctttaat ggaaaatatc atagagcttt tagaagtcca agataaaaga
     1081 cttaagattg cgattttgcc cttgcaagac tttttagaaa agaaaaaagc actttaaaag
     1141 cttagatgca taaaagcatc taagaaatta ttgaagaagt tttaaaacat tttgctgcac
     1201 tgcattagcc tgactcatag cataagaacc tgattgcgca aggatgttat atttagaaaa
     1261 atttgcactc tcagctgcaa agtctacatc tcttatggtt gattcagctg ctttaacgtt
     1321 tacttgagta acagtgatgt tgtttatagt cacttgaagc tgattttgca ctgaaccaat
     1381 gtcagctctg atttgatcaa gatttgttgt
//
LOCUS       DARBAR010000173         1394 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.174, whole genome shotgun sequence.
ACCESSION   DARBAR010000173 DARBAR010000000
VERSION     DARBAR010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1394)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1394)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1394
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.174"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..247
                     /locus_tag="SB815_001727"
     CDS             <1..247
                     /locus_tag="SB815_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyl transferase family 2"
                     /protein_id="HEG0907431.1"
                     /translation="NMSFYKSDFEAIEGFNEKFIGWGREDSEFVARFLFNDGVFKRLK
                     FNALAYHIYHEENSKNMLEINHQIYLETIKNEKTTWR"
     gene            251..>1394
                     /locus_tag="SB815_001728"
     CDS             251..>1394
                     /locus_tag="SB815_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG0907432.1"
                     /translation="MKKVGVVIPIYNVEKYLKECLDSVINQTYTNLEIILVNDGSTDE
                     NSLNIAKEYTLKDKRIILFDKKNSGLSSARNVGIEYFSGEYKLKNKTQTIKENSLIEF
                     NIEGNNPYEIYTVYKSYKAFNNEQDLTNFTYPIIDYIIFLDSDDYWELNCIEECVPRM
                     DGVDVVWFDSIEYHDIEKSYFKHHSRLKDINIKKECRINPIEWLKLLRQNKIKDFAFA
                     WSGIIDFDYIKDKKMKFKDAIFAEDHLFGILLFSQAKNIYVYPKVFYYYRIRANSLTN
                     QDKKITKDNILPYFKDIFIAFEENATLAKEYFKYVSWVETSLELVRFVENYHDKKISS
                     LLKDTILYFYIKNAFKIKKFDKDPLCIKEKLQLLKPYKISKIRYKVM"
BASE COUNT          578 a          127 c          216 g          473 t
ORIGIN      
        1 caatatgagt ttttataaaa gtgattttga agccattgag ggatttaatg aaaaatttat
       61 aggctggggt agggaagata gtgagtttgt agctagattt ttatttaatg atggagtgtt
      121 taaaaggctt aaatttaatg ctctggctta tcatatctat catgaagaaa atagcaaaaa
      181 tatgctcgaa atcaatcatc aaatttatct tgaaactata aaaaatgaaa aaacaacttg
      241 gagataaaac atgaaaaaag taggtgtagt aatccccata tacaatgtag aaaaatatct
      301 aaaagaatgt ttagatagtg taatcaatca aacttatact aatttagaaa tcatactagt
      361 aaatgatggt agtacagatg aaaactcact taatattgca aaagaatata ctttaaaaga
      421 taaaagaata attctttttg ataaaaaaaa tagtggttta agtagtgcta gaaatgtagg
      481 tatagaatat tttagtggag aatataaact caaaaataaa actcaaacta taaaagaaaa
      541 ttctttaata gaatttaaca tagaaggtaa taatccttat gaaatatata ctgtatataa
      601 aagctataaa gcttttaata atgaacaaga tttaactaac tttacttatc ctattataga
      661 ttatatcatc tttttagatt ctgatgatta ttgggaatta aactgcatag aagaatgtgt
      721 acctagaatg gatggggtag atgtggtttg gtttgatagt attgaatatc atgatataga
      781 aaaaagttat ttcaagcatc atagtcgttt aaaagatatt aatataaaga aagaatgtag
      841 aataaatcct atagagtggc ttaagcttct aaggcaaaat aaaattaaag actttgcatt
      901 tgcgtggagt ggcataattg attttgatta tataaaagat aaaaaaatga aatttaaaga
      961 cgctattttt gctgaagatc atttatttgg aattttgctt ttttcgcaag ctaaaaatat
     1021 ttatgtctat cctaaagtat tttattatta tagaattcga gctaattctt tgacaaatca
     1081 agataaaaaa atcactaaag ataatatact tccatatttt aaagatatat ttattgcatt
     1141 tgaagagaat gcaactttag caaaagagta ttttaaatat gttagttggg tggaaaccag
     1201 tttagaatta gtgcgatttg tagaaaatta tcatgataaa aaaatttctt cgttgctgaa
     1261 agatactatt ttgtattttt atatcaaaaa tgcatttaaa attaaaaaat tcgataaaga
     1321 tcctttgtgt attaaagaga aattgcaact attaaaaccc tataaaattt caaaaataag
     1381 atataaagtt atga
//
LOCUS       DARBAR010000174         1327 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.175, whole genome shotgun sequence.
ACCESSION   DARBAR010000174 DARBAR010000000
VERSION     DARBAR010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1327
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.175"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..510
                     /locus_tag="SB815_001729"
     CDS             <1..510
                     /locus_tag="SB815_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEG0907433.1"
                     /translation="GILPHSWFFAKKLDLGYKQDLNLSEQKLYQVKEYFLTLKEDEKK
                     VILDFLSQNNDDKYDLYKMLYYLINELYSFEHDGIFYQIIIDKEKMLIAQKHDKSFYP
                     LRSFVYKPYLHELKSIRPFSFLMKILGLEYLGAMISHTKFYRLARKLFFNPKGFFEDF
                     NYKIMKGKI"
     gene            507..>1327
                     /locus_tag="SB815_001730"
     CDS             507..>1327
                     /locus_tag="SB815_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose/GDP-mannose dehydrogenase family
                     protein"
                     /protein_id="HEG0907434.1"
                     /translation="MKIVIVGIGYVGLANAILFSKNNENEVVLLDIDENKIQSINNHK
                     SPIKDKLIEKFFVQNISKLHATSNIKEAYFNADFAVIATPTDYDEQLNFFDTRSIENV
                     LKDIKNINSKINVIIKSTVPIGYTKTIKQKFNMSNIVFSPEFLREGSALYDSLYPSRI
                     IIGDKSVLGKTIGDLFLKNIEKKNVDIFYMDSDEAESVKLFSNTYLAMRVGFFNEVDS
                     YARKHNLNSADIIKGISADDRIGKYYNNPSFGYGGYCLPKDTKQLLANFYNIPNS"
BASE COUNT          494 a          126 c          217 g          490 t
ORIGIN      
        1 ggaattttac ctcattcttg gttttttgca aaaaaattag atttaggtta taaacaagat
       61 ttaaatttaa gcgagcaaaa actttatcaa gtgaaagaat atttcttaac tttaaaggag
      121 gatgaaaaaa aagttatctt ggatttttta agccaaaaca atgatgataa gtatgatttg
      181 tataaaatgc tttattattt gattaacgag ctttatagtt ttgagcatga tgggattttt
      241 tatcaaatca tcattgataa agaaaaaatg ctgatagcac aaaaacatga taaaagcttt
      301 tatcctttaa gatcttttgt ttataaacct tatttgcatg agcttaagag tataagacct
      361 ttttcatttt tgatgaaaat tttaggttta gagtatcttg gtgctatgat ttcacatact
      421 aaattttatc gcttggcaag aaaattgttt tttaatccta agggattttt tgaggatttt
      481 aattataaaa taatgaaagg taaaatatga aaatagtcat tgttggaatt ggttatgttg
      541 ggcttgcaaa tgctatactc ttttcaaaaa ataatgaaaa tgaggttgta ttgttagata
      601 ttgatgaaaa taaaatccaa agtattaata atcataagtc tcctattaaa gataaattaa
      661 ttgaaaagtt ctttgtgcaa aatataagta aattacatgc tacttcaaat atcaaagagg
      721 cttattttaa tgcagatttt gcagttattg ctactccaac tgattatgat gaacagctta
      781 atttttttga tacaagaagt atagagaatg ttttaaaaga tataaaaaat ataaattcta
      841 agatcaatgt tattattaaa agcactgtgc ctataggata tacaaaaacc ataaaacaaa
      901 aatttaatat gtctaatatt gttttttctc cagaattttt acgggaggga agtgctttat
      961 atgatagtct atatcccagt agaattatta ttggtgataa aagtgttttg ggtaaaacta
     1021 ttggagattt gtttttaaaa aatatagaga aaaaaaatgt tgatattttt tatatggatt
     1081 cggatgaggc agaaagcgtt aagctttttt ctaatactta cttagcaatg agagtgggat
     1141 tttttaatga agttgattcg tatgcaagaa aacataattt aaattcagcg gatataatta
     1201 agggtattag tgctgatgat agaattggaa aatattacaa taaccctagt tttggatatg
     1261 gtggatattg tttacctaaa gatacaaaac agttgcttgc aaatttttat aatattccta
     1321 atagttt
//
LOCUS       DARBAR010000175         1313 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.176, whole genome shotgun sequence.
ACCESSION   DARBAR010000175 DARBAR010000000
VERSION     DARBAR010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1313
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.176"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..1313)
                     /locus_tag="SB815_001731"
     CDS             complement(<1..1313)
                     /locus_tag="SB815_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907435.1"
                     /translation="MREELFLKNTQALFEVDEFLACTLRSLKYLTFALIQDENGINFK
                     KDDIFLYENPNKELLENLTLFKTEYNKYPVLFFYGFGNGMFYKTLCKNKQHKHIIIFE
                     DNLEILTLAFHLFDFSEELKKEQLILFYTPNINTAQLTTLFTYEIIQKSVKIFNLFIH
                     NDFYQQFYSTQIQNINTQLIEIIRFIVLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQ
                     EFLKERRAKVENAIIVSTGPSLIKQLPLLKKYANKATIFCADSAYVILGKYGIKPDYV
                     CMLERDDIVSKCFDNDFGDFNKGILFILASVVHKEVLDFLEKDQRTYMLVHRPLNFAA
                     SLKLDEYGYLGVGHSVSNMIYELTGALRFENIIFIGQDLAYGEDGSSHPKEHIHGSQG
                     EEIRGEKYTLAYGGKGKVRTQLTWNLFRQAFEKDIFWAKEKLNITT"
BASE COUNT          447 a          196 c          178 g          492 t
ORIGIN      
        1 gtggtgatat tgagtttttc ttttgcccaa aatatatctt tttcaaaagc ttgacgaaat
       61 aaattccaag taagttgtgt tcttactttg ccttttcccc cataagctag tgtatatttt
      121 tctcctctga tttcttcacc ttgacttcca tgtatatgct ctttaggatg tgaacttcca
      181 tcctcgccat aagctaaatc ctgtcctata aaaatgatat tttcaaatct taaagctcct
      241 gttagttcat agatcatatt tgaaacactg tgtcctactc caagatatcc atattcatca
      301 agttttaaac tagccgcaaa atttaaaggg cgatgtacaa gcatataagt tctttgatct
      361 ttttctaaaa aatctaatac ttctttgtga accacagaag caagtatgaa aagtatgcct
      421 ttgttaaaat cgccaaaatc attatcaaaa catttagaaa ctatatcatc acgttctagc
      481 atgcaaacat aatcaggctt tataccgtat tttccaagga taacataagc actatctgca
      541 caaaaaatcg tagctttatt agcatacttt tttaataaag gaagttgttt tataagactt
      601 ggtcctgtag aaacaatgat agcattttca accttagctc ttctttcttt gagaaattct
      661 tgaaaaattc catgatttaa cattttaggg agattatcta gggtatgttt gattccaact
      721 aaagaatcat gtggatcatt acctttgttt aaaacgataa atcgtattat ttctatcagt
      781 tgagtattta tattttgtat ttgagtgcta taaaattgtt gataaaaatc attatgaata
      841 aaaagattaa aaatttttac acttttttga atgatttcat aagtaaaaag tgtggtgagt
      901 tgtgctgtat taatatttgg agtataaaaa agtattagtt gttctttttt taattcttcg
      961 ctaaaatcaa ataaatgaaa agctaaagtt aaaatttcaa gattgtcttc aaaaatgata
     1021 atgtgtttat gttgtttgtt tttacataaa gttttataaa acattccatt tccaaagcca
     1081 taaaaaaaca aaacaggata tttgttatat tcggttttaa acagagtaag gttttctaaa
     1141 agctctttat tgggattttc ataaagaaaa atatcatctt ttttaaaatt tattccattt
     1201 tcatcttgga taagtgcaaa agttaagtat ttaagtgatc ttagtgtaca agctaaaaac
     1261 tcatcgacct caaacaaagc ttgagtattt tttaaaaaaa gctcttctct cac
//
LOCUS       DARBAR010000176         1265 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.177, whole genome shotgun sequence.
ACCESSION   DARBAR010000176 DARBAR010000000
VERSION     DARBAR010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1265
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.177"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..>1265
                     /locus_tag="SB815_001732"
     CDS             <1..>1265
                     /locus_tag="SB815_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEG0907436.1"
                     /translation="ESNKGKYSKITPIDFLYNQIISFKTHPNIFNFQSINPIGIYRLD
                     LLRTNQIKLNETPGASYQDNGLWFQIFALAKSIYFINEAFYMLRRDNPNSSVKSKEKV
                     YCACEEYDFIRDFLKKHPDLEKTLAPICALHRFGNYMFTLERIDERYKLDFLKRFSQD
                     FRKILKDKELDENLFGDGDMKIIYSIVENPENYYFLYMGYCNDMFGKLYFGASERIKW
                     QLSYRIGKLLIDLKNPVQILKFPFKLFLEIKQFKFEQKIYKTTIKFYPNLQLPPLEEY
                     SDYEQALKTKKHLSYILGKSFINNPILFIFKIKKIYKQYKKDISSSKKNIKELSDYDF
                     LLNRHKQIFDYTPDFKCPVTFNEKLIYRILYDRSCIYSFLADKIKMRFYVASALSDNH
                     EYSWDKIDILNEKSILFNNIDDLQDKIFET"
BASE COUNT          497 a          133 c          167 g          468 t
ORIGIN      
        1 gaatcaaata aaggaaaata ttcgaaaatt actcctattg attttttata taatcaaatt
       61 atttctttta aaacccaccc taatatattt aattttcaaa gcataaatcc aatcggtatt
      121 taccgattgg atttattaag aacaaatcaa attaagttaa acgaaactcc aggagcttcc
      181 tatcaagaca atggtttatg gtttcaaatt tttgctcttg ctaaaagtat ttattttatt
      241 aatgaagcat tttatatgct tagaagagat aatcctaatt catccgtaaa aagcaaagaa
      301 aaagtatatt gtgcatgtga agaatatgat tttattcgag attttttaaa aaaacatcct
      361 gatcttgaaa aaacacttgc tccaatatgt gctttgcatc gttttggaaa ttatatgttt
      421 actttagaaa gaatcgatga aagatataag ttggattttt taaaaagatt ttcgcaagat
      481 tttcgcaaga ttttaaaaga taaagagctt gatgagaatt tattcgggga tggtgatatg
      541 aaaataattt attctatagt tgaaaaccca gaaaattatt attttctcta tatggggtat
      601 tgtaatgata tgtttggtaa gttatatttt ggtgcctctg aaaggattaa atggcaatta
      661 tcttatagaa taggtaaact tttgattgat cttaaaaatc cagtacaaat cttgaaattt
      721 ccatttaaat tgtttttgga gattaaacaa tttaaatttg aacaaaaaat ttataaaact
      781 acaattaaat tttatccaaa tttacagctt ccccctctag aggaatattc tgattatgaa
      841 caggcattga aaactaaaaa acatttaagt tatattttag gaaaatcttt tatcaataat
      901 cctattttat ttatttttaa aattaaaaaa atatataagc aatataaaaa agatataagt
      961 agctcaaaaa aaaatattaa ggaattaagt gattatgact ttttattaaa tagacataaa
     1021 caaatttttg attatactcc agactttaaa tgtcctgtta catttaatga aaaattaata
     1081 tatagaattt tatatgatag aagttgtata tattcttttc ttgcagataa aattaagatg
     1141 agattttatg tagctagcgc tttgtctgat aatcatgaat atagttggga taaaatcgat
     1201 atattaaatg aaaaatctat tttatttaat aatatagacg atttacaaga taaaattttt
     1261 gaaac
//
LOCUS       DARBAR010000177         1249 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.178, whole genome shotgun sequence.
ACCESSION   DARBAR010000177 DARBAR010000000
VERSION     DARBAR010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1249)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1249)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.178"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..>1249
                     /locus_tag="SB815_001733"
     CDS             <1..>1249
                     /locus_tag="SB815_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEG0907437.1"
                     /translation="ETKENYHSKFIAYLIDINKDHYQKNFAKVFLEKLGKSLVNTKFE
                     NLNIEDIKSVETEACIKDNRRIDILITLSDKRYIIIENKIYAKDQKNQLKDYINFVRK
                     NIKNIKDCYKNILTIYLHQDECASPSDYSLGNFTIKTNLIKDKNENNVSYYLKMDYIW
                     IKEWIDECIKIYEEKSTKDQKFILDIQNIIFTLNQYKSILQWYMTDEYTQRDDVLEFI
                     FQNNIKMQNLKNAMILYRYNKNKSELKNLNEENYKKAKDIIQHKWSNICEYIIEEFFD
                     SFEHKEIKIGDITFIGNKIEENRVNHGVFIFYPIDYKNESIYPCIYIYFKKKYYDIIG
                     LTFEISNDDEEDIENEKYKECLKLFKDVKEENVRKYQNHYYCDKLINNEKLEGEYAFI
                     YWLIENQNSKKDFIQILNDFFIKK"
BASE COUNT          587 a           88 c          169 g          405 t
ORIGIN      
        1 gaaacaaaag aaaattatca ttctaaattt atagcttatt taattgatat aaataaggat
       61 cattatcaaa aaaattttgc aaaggtattt ttagaaaaac ttggtaagag tttagtaaat
      121 acgaaatttg aaaatttaaa catagaagat ataaaaagcg tagaaacaga agcctgcata
      181 aaagataata gaaggataga tattttaata acattaagtg ataaaagata tattataata
      241 gaaaataaaa tttatgcaaa agatcaaaaa aatcaattga aagattatat taattttgta
      301 agaaaaaata tcaaaaatat aaaagattgt tataaaaaca tattgactat atatttgcat
      361 caagatgagt gtgctagtcc tagtgattat agtttgggaa attttacaat aaagacaaat
      421 ttgattaaag ataaaaatga aaataatgtt agctattatt tgaagatgga ttatatatgg
      481 attaaggaat ggattgatga gtgtataaaa atatatgaag aaaaatcaac caaagatcaa
      541 aaatttattc ttgatataca aaacattatt tttactctaa atcaatacaa aagtatttta
      601 caatggtata tgacagatga gtatactcaa agagatgatg tactagaatt tatttttcaa
      661 aacaatataa aaatgcaaaa tttaaaaaat gcgatgattt tatatagata taacaaaaac
      721 aaatcagagc ttaaaaattt aaatgaagaa aactataaga aagctaaaga tattatccag
      781 cataaatgga gcaacatctg cgaatatata atagaagaat tttttgatag ttttgaacac
      841 aaggaaatta aaataggtga tataactttt atcggcaata aaatagaaga aaatcgtgtt
      901 aatcatggtg tgtttatatt ttatcctatt gattataaga atgaaagcat atatccatgt
      961 atatatattt attttaaaaa aaaatactat gatattattg gtttgacatt tgaaatttca
     1021 aatgatgatg aagaagatat agaaaatgaa aaatataaag aatgtttaaa attatttaaa
     1081 gatgtaaaag aagaaaatgt tagaaaatat caaaatcact attattgtga taaattaata
     1141 aacaatgaaa aattagaagg agaatacgct tttatttatt ggttgattga aaatcaaaat
     1201 tctaaaaaag attttattca aattttaaat gattttttta ttaaaaaac
//
LOCUS       DARBAR010000178         1230 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.179, whole genome shotgun sequence.
ACCESSION   DARBAR010000178 DARBAR010000000
VERSION     DARBAR010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.179"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..>1230
                     /locus_tag="SB815_001734"
     CDS             <1..>1230
                     /locus_tag="SB815_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG0907438.1"
                     /translation="FDENLKSRLQKTLEKFQNLEFNIAITGVMNAGKSSLLNALLKED
                     FLGVSNIPETANLTVLSYGKSEEAKIYFWDKKEWQNILESSHFNADLKEFIDKLDKSV
                     NIEDFIKDKPLIQNIALCELKNFSSAKNKISALIKKIEIKSHLEFLKNNISIVDTPGL
                     DDVVVQREIVTNEYLRESDFLIHLMNASQSLTQKDADFLVHCLLNSRLSKFLIVLTKA
                     DLLSKKDLEEVIVYTKESLKSRLVDLDENLVEKIDFLCVSAKMASDFYKGLASKESLQ
                     KSGMQEFENYLFNELYAGEKSKIALRAYKKELHLELKNILSEYEMQNRLIKENKQGVS
                     EENQKLLLELQKQNTLLKEAQDEISNSIAKLKNIDSGIDNLVLLLAKKLKERLIDEFK
                     YLKNNAQKLNLSRILNI"
BASE COUNT          495 a          128 c          210 g          397 t
ORIGIN      
        1 gttttgatga aaatttaaaa tcaagacttc aaaaaacttt ggaaaaattt caaaatttag
       61 agtttaatat agccatcact ggcgtgatga atgcaggaaa atcaagtctt ttaaatgctc
      121 ttttaaaaga agatttttta ggggtttcaa acatacctga aacagctaat ttaacagtat
      181 taagctatgg taagagtgaa gaagcaaaga tatatttttg ggataaaaaa gaatggcaaa
      241 atatacttga aagttcgcac tttaatgcag atttaaaaga atttattgat aagctggata
      301 agagtgtaaa tatagaagat tttattaaag ataaaccttt gatacaaaat atcgcacttt
      361 gtgagcttaa aaatttcagt tctgctaaaa ataaaatttc agctttaatt aaaaaaatag
      421 aaattaaaag tcatttagaa tttttaaaaa ataatatttc tatagttgat actccagggc
      481 ttgatgatgt tgtagttcaa agagaaattg ttacaaatga gtatcttaga gaaagtgatt
      541 ttttaattca tttaatgaat gcttctcaaa gcttgactca aaaagatgca gactttttgg
      601 tgcattgtct tttaaattca aggctgagta agtttttaat tgttttaact aaagcggatt
      661 tgttaagcaa aaaggattta gaagaagtca ttgtttatac caaggaaagc ttaaaatcaa
      721 gacttgtgga tttagatgaa aatttagtgg aaaagattga ttttttatgt gtgagcgcta
      781 aaatggcaag tgatttttat aaaggtttag cgtccaagga aagcttgcaa aaaagtggta
      841 tgcaagaatt tgaaaactat ctttttaacg agctttatgc aggagaaaaa agtaagattg
      901 ccttaagagc ttacaaaaaa gaattgcatt tagagcttaa aaatattcta agcgaatatg
      961 aaatgcaaaa tcgtcttatt aaggagaata aacaaggtgt aagtgaagaa aatcaaaagc
     1021 ttttacttga acttcaaaag caaaacacct tattaaaaga agcacaagat gaaatttcaa
     1081 attccattgc aaaacttaaa aatatagata gtggcataga taatcttgtt ttacttttgg
     1141 ctaaaaaatt aaaagaacgc ttgatagatg agtttaaata tttgaaaaat aatgcacaaa
     1201 agcttaatct ttctcgtatt ttaaatatag
//
LOCUS       DARBAR010000179         1180 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.180, whole genome shotgun sequence.
ACCESSION   DARBAR010000179 DARBAR010000000
VERSION     DARBAR010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1180)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1180)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.180"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..791)
                     /locus_tag="SB815_001735"
     CDS             complement(<1..791)
                     /locus_tag="SB815_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG0907439.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHRENLEQKNENQHYVKLEY
                     EQNVNILPQFAYDINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGAPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNDRAKIYENLN
                     FITPLKEKFAIYSEDGKFLFESRIGAIYPYYKEDKNYFYGKIGSK"
     gene            840..>1180
                     /gene="pif1"
                     /locus_tag="SB815_001736"
     CDS             840..>1180
                     /gene="pif1"
                     /locus_tag="SB815_001736"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HEG0907440.1"
                     /translation="MFDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSVLDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANV"
BASE COUNT          421 a          136 c          180 g          443 t
ORIGIN      
        1 tttttagaac ctatttttcc ataaaaatag tttttatctt ctttgtagta aggatagata
       61 gcaccaattc tactttcaaa taaaaattta ccatcctcgc tatagatagc aaatttttct
      121 tttagtggtg tgataaagtt gagattttca tagattttcg ctctatcgtt tgagaaaaat
      181 tccaaatttt tactttcaac aaatccaaat ccagcttcac ctaaaacaaa agcataacgc
      241 ttatctttac taaaatgtga aattaagaca ggggctccag tatttaaaat gccatcgctt
      301 gcatagtcaa aaggaattcc ttcattttca aaaaaaggat tttttaagat agctctttgg
      361 gttggaagat ttttaatgat tgtattttgg ataattaaag ctttttgatt aagtttaccg
      421 aattcttgga tatttgcgtt atttatagcg tttttaaacc atgaaagtgg aataatttgt
      481 ttattgaaaa aataataagt attttttgaa tttaaatata aaggaaagga ccaaaaaata
      541 ttttgtcctt tgtaattttt aaatgaatca tgccaagggt taaagaaata ttttttatat
      601 cgttttgcat caaaattaat atcgtaagca aattgtggca aaatgtttac attttgttcg
      661 tattcaagtt ttacataatg ttgattttca tttttttgtt ctaaattttc acgatgaagt
      721 gaagttaaat tttttgttga acaagctgtt aaaaatagca ctataaaagt aaaatataaa
      781 caagatttca taatcaacct tttagaaaaa atagttataa ttaaagccaa ggaaatataa
      841 tgtttgataa actagaaaaa attttagctt atgataatgt ttttttaagt ggtggtgctg
      901 gagttggtaa aagctttttg acaaatgagc ttatcaaatc ttatagaaaa caaaaaaaat
      961 tagccatagc tcttggttct agtgctctat cggcgtttaa tataggcggt gttactttac
     1021 acagcttttt ttgtttaggg tattgtgatg atatgatgaa attaagtgta ttggatcgca
     1081 atcaaaaaca aaaagaaaaa ttaacaaaac ttaaagagct tttaaaaacg attgagctta
     1141 ttattatcga tgaaatttcc atggttagtg caaatgtttt
//
LOCUS       DARBAR010000180         1145 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.181, whole genome shotgun sequence.
ACCESSION   DARBAR010000180 DARBAR010000000
VERSION     DARBAR010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.181"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..82)
                     /locus_tag="SB815_001737"
     CDS             complement(<1..82)
                     /locus_tag="SB815_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-glycoprotein
                     endo-beta-N-acetylglucosamidase"
                     /protein_id="HEG0907441.1"
                     /translation="MKPIIIFFSLFLIPLFADDLKSGFGEE"
     gene            complement(57..806)
                     /locus_tag="SB815_001738"
     CDS             complement(57..806)
                     /locus_tag="SB815_001738"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEG0907442.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFAYKNEELFFEGKVKYCFEANYNFF"
     gene            complement(803..>1145)
                     /locus_tag="SB815_001739"
     CDS             complement(803..>1145)
                     /locus_tag="SB815_001739"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEG0907443.1"
                     /translation="THPKIRAKILEQMQILDKENKAFFVEIPLFFESGAYENLGKVIV
                     IYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECV
                     KVIQEISKGNM"
BASE COUNT          356 a          214 c          138 g          437 t
ORIGIN      
        1 attcttctcc aaatccactc tttagatcat cagcaaaaag tgggattaga aaaagactaa
       61 aaaaaattat aattggcttc aaaacaatac tttacctttc cttcaaaaaa caattcttca
      121 tttttatatg caaaccctac ctcttcacca cttttaggag ttattttaac tttattttgt
      181 acttttttat ttaaaaatgc cagataaaaa caagccccca ttcctgtgcc acaagctaag
      241 gtttcatctt caactccgcg ttcataggtg cgaactttta aatgattttc atctaaaatt
      301 tttacaaaat taacattggc attatatttt tgtctcattt tttgacaaag cattgtatca
      361 aattcatcta aattttgaca aaaatgtact agatgtggaa ctccagtgtt gcaaagttgc
      421 caagtttttc ctaattcttc aaaagtattt tgcacgcttt ttattttgcc taaagatact
      481 tcaactttat cttgatttac ctttgctttt attattcctg caccggttaa aaaactcatg
      541 ttaggattta ttttgttaat atgatgtgca aaatgtgccg cagcccttga gccattgcca
      601 cacatagcag cccttgagcc atcgttatta taaaattccc attcaaagtc gtatttttca
      661 tgaggcaata ttacgataaa gccatccgca cctataccct cataacgatt acaaagttct
      721 ttagctaaag cacttctatc ttcttttcta tcagcatttg ttatgacaaa atcattccca
      781 cttgcacaat atttataaaa tttcacatgt ttcctttaga aatttcttgt attactttaa
      841 cacattcttg cctaaaatcg gcataagaat tagtattttt aatgataaaa tctgcttttt
      901 taagtttttc ttcaatatct atttgagaat caagtcttgc ttttgcagct tctaagctaa
      961 gcttatctct ttgcatgatt cttttaaggc ttaattcttt aggtgtgtaa attacaatga
     1021 ctttgcctaa attttcataa gcaccgcttt caaaaaaaag aggaatttct acaaaaaaag
     1081 ctttattttc tttatctaga atttgcattt gttctaaaat tttagctcga attttaggat
     1141 gagtg
//
LOCUS       DARBAR010000181         1129 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.182, whole genome shotgun sequence.
ACCESSION   DARBAR010000181 DARBAR010000000
VERSION     DARBAR010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.182"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..>1129)
                     /locus_tag="SB815_001740"
     CDS             complement(<1..>1129)
                     /locus_tag="SB815_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG0907444.1"
                     /translation="ADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQTV
                     KATIGATQSSKIGLTRFETGGRISASGEVQFTLKNYNGIDDFKFQKVVISTSVGTGLG
                     ALADEINKNADKTGVRATFTVETRGMAAVRAGTTSDDFAINGVKIGKVEYKDGDSNGA
                     LVAAINSVKDTTGVEASIDANGQLLLSSREGRGIKIEGSIGAGAFINKDMKENYGRLS
                     LVKNDGKDILVSGTGLSSAGFGAGNFISQASVSLRESKGQLDANIADAMGFGSVNKGV
                     MLGGYSSVSAYMSSAGSGFSSGSGYSVGSSKGYSAVLTANAIVISNASAVSKIYNVSA
                     GSGFSSGSTLSQFATMKTSAGNPLGAKDETAGVTTLKGAMAV"
BASE COUNT          352 a          253 c          169 g          355 t
ORIGIN      
        1 accgccatag cgcctttaag tgtggtaaca cctgctgttt catctttggc tccaagagga
       61 ttgcctgctg aagttttcat ggttgcaaac tgagaaagtg ttgaaccact tgaaaaacca
      121 gaacctgctg aaacattata tattttagaa acagctgaag cattagaaat aactattgca
      181 ttagcagtaa gtacagcaga ataaccctta ctactaccta cagaataacc cgaacctgaa
      241 gaaaatccac ttcctgcgct actcatatag gcactaacag aagaataacc acctaacata
      301 acacctttat ttacagaacc aaatcccata gcatcagcga tattagcatc aagctgccct
      361 tttgattctc ttaaagaaac agaagcttga gagataaaat tacctgctcc aaaacctgca
      421 gaagaaagac ctgtaccgct tactaaaata tctttaccat cgtttttaac taaagacaag
      481 cggccatagt tttctttcat atctttattg ataaaagctc cagcgcctat acttccttcg
      541 attttaatcc ctcttccctc tcttgagcta agcaaaagtt gtccattagc atcgattgaa
      601 gcttcaaccc cggtagtatc tttaaccgaa ttgattgcag caaccaaagc accgttggaa
      661 tcaccatctt tatattctac tttaccaatt ttgactccat taatagcaaa gtcatctgaa
      721 gtagttccag ctctaactgc agccatacct ctagtttcta ctgtaaaagt agctctaaca
      781 cctgttttat cagcattttt attgatttca tctgccaagg ctccaagtcc tgttccaact
      841 gaagttgaaa tcacaacttt ttggaattta aaatcatcta taccattgta atttttaaga
      901 gtaaattgca cttcaccact agctgaaatt cttccccctg tttcaaagcg tgttaaacct
      961 atcttagaag actgggttgc tcctatagta gcttttacag tttgatttga acttgcaccg
     1021 atttgaaatt cttgattgat aaaatttcca cttaaaagtt gtttaccgtt aaatgaagta
     1081 gtatttgcga tattgtcaag ttcttccatt aaacggttga tatctgctt
//
LOCUS       DARBAR010000182         1129 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.183, whole genome shotgun sequence.
ACCESSION   DARBAR010000182 DARBAR010000000
VERSION     DARBAR010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.183"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..>1129
                     /locus_tag="SB815_001741"
     CDS             <1..>1129
                     /locus_tag="SB815_001741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEG0907445.1"
                     /translation="ISPFLAIWGLVLLLKSKTSKQYFWIGFFVGILWFWWIGLSSIYF
                     NLNYLVPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWFNWGIFTV
                     YGFFDPSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYK
                     LINTNISQDQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELM
                     LKELSYKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKK
                     YFLKNIEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSS
                     EYKLQQLLMKFYASKYGVSVYHATNGKENIVILPKKLLSKDW"
BASE COUNT          407 a          143 c          148 g          431 t
ORIGIN      
        1 attagtccat ttttagctat ttgggggtta gttttacttc taaaaagtaa aacttctaaa
       61 caatattttt ggataggttt ttttgtaggg attctttggt tttggtggat tggtttatct
      121 tcaatttatt ttaatctaaa ctatttagta ccaattatac caattatcat tggttttatt
      181 tatgggttac tttttagatt atgttattta ttaaaatttg attttttaag gctttgtgga
      241 attttttgca taagttttat ccatccttta ggatttgatt ggtttaattg ggggattttt
      301 acagtttatg gtttttttga cccaagttat cgtggcatta tttgcatatt tttaatagca
      361 tatttcatct atgagggtta tatatcaaga tattataaaa tagcaattgt tcttatttta
      421 ttctttagtg gatttcaata taatgaaaaa caagctcaaa ctcttaattt aaactacaaa
      481 ctcatcaata ctaatatctc tcaagatcaa aaatttttac aagaaaattt aaaatcaaat
      541 tctgatatct taattcaaga tatacttcaa gctataaatg aaaaaaaaga acttgtaatc
      601 ttgcctgaaa ccgcttttgc ttttgattta aaaaatacca aatatgagct tatgcttaaa
      661 gaattatctt ataaaatcac cattattaca ggagcatttc atgttgaaaa agagcatact
      721 tacaatagca cttatatctt taaaaaaggc aatgtctata ttttaaataa gcatttttta
      781 gttccctttg gtgaagaaat tccatttttt aaagacttaa caaaaaaata ttttctcaaa
      841 aatattgaag aattttccaa aggtcctata caaagcaaat ataaattaga taatcaaatt
      901 atcacaaatg caatttgtta tgaagctacc aaagaacaaa actatcaaaa ttcacaaatt
      961 attatagccc taagcaacaa tgcttggttt aataatagta gcgaatacaa actccagcaa
     1021 ctcttaatga aattttatgc aagtaaatat ggggttagtg tttatcatgc tacaaatggc
     1081 aaagagaata tagttatact ccctaaaaag cttttaagca aagattgga
//
LOCUS       DARBAR010000183         1120 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.184, whole genome shotgun sequence.
ACCESSION   DARBAR010000183 DARBAR010000000
VERSION     DARBAR010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.184"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            109..>1120
                     /locus_tag="SB815_001742"
     CDS             109..>1120
                     /locus_tag="SB815_001742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG0907446.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSNTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSIDETNEFLPDHMKISQKEVVSEAMNRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDFKATFPNLDKVDFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSTQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDTKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDNLNKDNNLKDLNKESKDLNKDFNKELNKNQEK
                     NNL"
BASE COUNT          486 a          132 c          157 g          345 t
ORIGIN      
        1 tttaaatgaa gataagatga ttaaagtata tgaagattct tatttgaaag aaaaatttcc
       61 taatgtaatg gtagataaat ttttaaaata attttttttg aaggaaaagt gatgtcaaat
      121 ttagctccgc aaaatgatgt tttaaatctt acgccgagta aaacttctaa tactagtagt
      181 tcctttagta aaacgagtaa aaataaagaa catgaaagta gcgatagtaa aaattcaact
      241 caagatgata cggaaagttt tttaaattct ttgcttaatt ctattgatga aaccaatgaa
      301 tttttacctg atcatatgaa gatcagtcaa aaagaagttg ttagtgaagc gatgaacaga
      361 cttcaaaaag gagcttttga tgagagtgat aagataagca ttttcgaatc tgcttctttt
      421 atgcaaattc tttctttgtt ggataagcta aaaacagata cagcagatgt taaactagca
      481 aatctttcta ctcaactttc aagtcttatt aaaacagagg ctaattttaa tgctttaaaa
      541 ggtgcatcaa atcttagtga gcttttggac atagctaaag atctgggctt aaatgtaaaa
      601 aatattaaag tagatcgtct tcttgatttt aaagcaactt ttccaaattt agataaggtt
      661 gattttttta agggtgctgt ggataatgtt tttaaagaaa tcatcaataa taaaatttcc
      721 aatgtgagta aaaatttaaa tcacaattta gaaaatacaa ctcatactac aagcactcat
      781 tctacgcaaa aaacaaattc taaagatagc ggttctttgc tttctcaaac tttaaaaaat
      841 ttagattcca tactttcatc caaagaaagc aaacacgaaa aaaacgataa agttaaatca
      901 aaaatagaag aagataccac agatactaaa aatactttaa aaaatatcaa aaatgatgag
      961 tttgcaaaaa atttaacaga agagttaaat ataaaagata aaaaaaacca agataattta
     1021 aataaagata acaatcttaa agatttaaat aaagaaagca aagacttaaa caaagatttt
     1081 aataaagagt taaataaaaa tcaagaaaaa aacaatttaa
//
LOCUS       DARBAR010000184         1101 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.185, whole genome shotgun sequence.
ACCESSION   DARBAR010000184 DARBAR010000000
VERSION     DARBAR010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1101
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.185"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            37..>1101
                     /gene="glf"
                     /locus_tag="SB815_001743"
     CDS             37..>1101
                     /gene="glf"
                     /locus_tag="SB815_001743"
                     /EC_number="5.4.99.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-galactopyranose mutase"
                     /protein_id="HEG0907447.1"
                     /translation="MYDYLIVGSGLFGSIFAYEATEKGYTCLVVEQREHIGGNCYTEN
                     IKNINVHKYGAHIFRTSDQNIWDYMNQFCEFNHFINSPIAIYKDEIYNLPFNMNTFSK
                     LWGIKTPNEARKIIEMQKQIIQHPPKNLEEQAISLVGTDVYEKLIKGYTEKQWGRSCK
                     DLPASIIRRLPVRYIYDNNYFNDPYQGIPKGGYTAIFDKMLKKSKVILNTDFLKYKDK
                     FKNKAKKIVFTGCIDAYYDYRYGALEYRSLKFEHKILNLDNFQGVAVVNYTDKEIPYT
                     RIIEHKHFEFGNTDTTVISEEYPLEWIKGIEPYYPINDEKNQALYEKYKQLAKHESNV
                     YFGGRLGEYRYYDMQDVVRSA"
BASE COUNT          419 a          106 c          195 g          381 t
ORIGIN      
        1 tttttttata attaggtttt gtgaggaatg tgattcatgt atgattattt aattgttggt
       61 tctggattgt ttggtagtat ttttgcttac gaagcaactg aaaaaggtta tacttgttta
      121 gttgtggagc aaagggaaca tattggaggt aattgttata ccgaaaatat taaaaatatc
      181 aatgtgcata aatatggtgc tcatattttt agaacttcag atcagaatat atgggattat
      241 atgaatcaat tttgtgaatt taatcatttt atcaattctc ctattgcaat ctataaagat
      301 gaaatttata atttgccttt taatatgaat acttttagta aattatgggg aattaaaact
      361 ccaaatgaag ctagaaaaat aattgaaatg caaaaacaaa taattcaaca tcctccaaaa
      421 aatttggaag aacaagctat atctttagtt ggtacagatg tatatgaaaa acttattaag
      481 ggttatacag aaaaacagtg gggtagatct tgtaaggatt tgcctgcttc tattataaga
      541 agattgcctg ttcgatatat ttatgacaat aattatttta atgatcccta tcaaggtatc
      601 cctaaaggcg gctatacggc aatttttgat aaaatgctaa aaaaaagtaa agttatttta
      661 aatactgatt ttttaaaata taaagataaa tttaaaaata aagctaaaaa aatagttttt
      721 actggttgta ttgatgctta ttatgattat cgatatggag ctttggaata tagaagttta
      781 aaatttgagc ataaaatatt aaatttagac aattttcaag gagtggcagt tgtcaattat
      841 actgacaagg aaatacctta tactagaatt atagagcata agcattttga atttggaaat
      901 acagatacaa cagttataag cgaagaatat cctttagaat ggattaaggg tattgagcct
      961 tattatccaa taaatgatga aaaaaatcaa gctttgtatg aaaagtataa gcaattagca
     1021 aaacacgaga gtaatgtata ttttggggga agattgggag aatatagata ttatgatatg
     1081 caagatgttg taagatcggc a
//
LOCUS       DARBAR010000185         1031 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.186, whole genome shotgun sequence.
ACCESSION   DARBAR010000185 DARBAR010000000
VERSION     DARBAR010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1031)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.186"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            10..1017
                     /gene="flgS"
                     /locus_tag="SB815_001744"
     CDS             10..1017
                     /gene="flgS"
                     /locus_tag="SB815_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002850001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HEG0907448.1"
                     /translation="MLKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNSLRAM
                     VDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFYAVKI
                     IAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFARSELK
                     NKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNFTSQI
                     DFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASYDNEKICIRV
                     YDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYFTLPL
                     V"
BASE COUNT          377 a          129 c          186 g          339 t
ORIGIN      
        1 aatgaaagta ttttaaaaag tttagactca aatgaaaaag aaaccctaca aaaaggctta
       61 gaaagtctta tagaacaaac ttatgtaata gaaaatgaat ataaaacttt aaatgaaaac
      121 tataactcct tacgcgcaat ggttgatgag attatagagg tgttgcctag tgcgctttgg
      181 attttagata aagaaaaaaa tattatttta caaaatcaag aagccttgaa aaatccaaaa
      241 ttacttagta tcattagtct tgataaaatt cgtgatgagc ttgaatttga aggtaggttt
      301 tatgcggtaa aaatcatagc gcataatgaa aaaactatag tttcagctac agatattagc
      361 gatgaaaaac gcaatgaaag gcttgcaagc atgggtagtg tagcggctca tttggcacat
      421 gagataagaa atcctattgg atctatatct ttacttgctt caaccctttt tgctcgtagt
      481 gagcttaaaa ataagcatat agttcttgaa atccaaaagg ctattgctag agtggagcgt
      541 atcgtaaatt caactctact ttttactaag ggtgtacaca tcaatgcttt aaattttaat
      601 cttttagagt taaaagaaga gtgtgaaagt gccattaact cttataattt cacttctcaa
      661 atagactttg aaatatcttt tttggataag cagatttgtg ctgataaagc tcttcttggt
      721 ttggttttgc aaaatttgat ttataatgct attgatgcga tagaagaaag cgaatgtgaa
      781 aagcctatga ttaaaatttt agcaagttat gataatgaaa aaatatgcat cagagtgtat
      841 gataatggtt gtgaaataaa agatgagaaa ttggtttttg aagcttttaa aacaacaaaa
      901 cttaaaggca atggacttgg cttgtctctt tctaaagaaa tcataaacgc tcataaggga
      961 gagttaagtt ttcaaagtga tcctaagaat ttttatttta ccttaccttt ggtgtgataa
     1021 atattttctt t
//
LOCUS       DARBAR010000186         1021 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.187, whole genome shotgun sequence.
ACCESSION   DARBAR010000186 DARBAR010000000
VERSION     DARBAR010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.187"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..350)
                     /gene="crcB"
                     /locus_tag="SB815_001745"
     CDS             complement(<1..350)
                     /gene="crcB"
                     /locus_tag="SB815_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEG0907449.1"
                     /translation="MLNTLLVVGFGGFIGAILRMLSINLVNKFFPYSISFGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYLHFALN
                     IILNVFLCLFAAWLG"
     gene            complement(344..1021)
                     /locus_tag="SB815_001746"
     CDS             complement(344..1021)
                     /locus_tag="SB815_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEG0907450.1"
                     /translation="MKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAKFQRYT
                     ISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIFKVAMK
                     KPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGAKILSE
                     KLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDEKWLENTRKKMQELLD
                     QERAKLC"
BASE COUNT          383 a          162 c          128 g          348 t
ORIGIN      
        1 ccaagccatg cggcaaataa gcaaagaaag acatttaaga taatatttaa cgcaaaatga
       61 agataatttc cactttgcaa aagaagtaaa ttttgataag aaaaagtaga aaaagttgta
      121 aaagctccta aaaaacctgt acttataaag cttttaagta aaggagataa acctttattt
      181 tgtgcataag aaaacaaaag tcctatgata aaagaaccca aaacatttac aaaaagagtt
      241 ccaaagctga tagaataagg aaaaaattta ttcactaaat ttatagaaag cattcttaat
      301 attgctccta taaatccccc aaaaccaact actaaaagag tgtttaacaa agcttagctc
      361 tttcttgatc gagtaattct tgcatttttt ttctggtgtt ttcaagccat ttttcatcat
      421 ttgtatcgac taaatccata caaatgattt taagtactcc gctgcttgca ctaaaacttt
      481 ttgtgtctaa aatttttgca gaatccacaa ttaaaatagg ttgaacttta agatttaatt
      541 tttcacttaa aatttttgct ccactttgaa atttaagcat tttttcattt ttagatctag
      601 ttccttctgg aaaaatagcc aaaaccctat cttcactaat tctttctttt gcttctttta
      661 aaactcgcac caaatcacgc ggattttttc tatctataca aagaagtttt ggttttttca
      721 tagcaacttt gaaaatagga atttctccta attctttttt ggcaatccag cataaatttt
      781 taggatataa ttcttctaaa gcgatgatat ctaaagcact ttgatgattc attaaaatca
      841 tctgagcttg tggattaaaa gtaccaatga tttcttgttt ataagagata gtatatcttt
      901 gaaatttagc ccaaattttg cgaattttcc aaagtgtgtt ttgagatttt gtaaagcaaa
      961 aacaaaaaat caccaaagca acacttaaaa caaaaaaaat ccaaaaataa agagctttaa
     1021 t
//
LOCUS       DARBAR010000187          956 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.188, whole genome shotgun sequence.
ACCESSION   DARBAR010000187 DARBAR010000000
VERSION     DARBAR010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 956)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.188"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            35..445
                     /gene="perR"
                     /locus_tag="SB815_001747"
     CDS             35..445
                     /gene="perR"
                     /locus_tag="SB815_001747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HEG0907451.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCTKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDNCKKCH"
     gene            491..>956
                     /locus_tag="SB815_001748"
     CDS             491..>956
                     /locus_tag="SB815_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907452.1"
                     /translation="MVYEIQKNFLLSDCTLLENLKKDNIPFRNSKFETFYTQITSNHS
                     VKFQSFCNEFYKITKFNNSILEQNQEEKISKKKFEKARKKIIGKSIKKERFEFKFCSL
                     KSYIDIYEEPKICILKIFFPTLDSSNEFKIPKDFKIQKELHHDLNSKHIVLYG"
BASE COUNT          398 a          104 c          122 g          332 t
ORIGIN      
        1 ttatttttac ttaaaaaagc aaggaataaa taaaatggaa ttactacaaa tgcttaaaaa
       61 acatgagtta aaagctactc cgcaaagact atgtgtttta aaaattttaa aaagacatga
      121 gcatcctaat attgatgaat tatatacaga aattaaaaaa gaataccctt caatctcttt
      181 agcgacggtt tataaaaatc ttaatacttt acaagaacaa ggtttagttg ttgaaatcaa
      241 tgttttaaat caaaaaactt gttacgatat ctatgaagaa gaacatattc atgttgtttg
      301 caccaaatgt ggtggtatag aggatttaag ttttaaagat gctaagcttt atgaatatca
      361 agagcattta gaaaaaaaga taggcaatct cgtcaatcat ctgtctgttt gtgcttatgt
      421 tgataattgc aaaaagtgtc attaagcaaa ataaggttaa aataacccat atattttaag
      481 ggttatttta atggtttatg aaattcaaaa aaacttttta ctatctgatt gcactctttt
      541 agagaattta aaaaaagata atataccttt tcgaaattct aaatttgaaa ctttttatac
      601 tcaaataact tcaaatcata gtgttaaatt tcaaagtttt tgcaatgaat tttataaaat
      661 tacaaaattt aataattcaa ttttagaaca gaatcaagaa gagaaaattt ctaaaaaaaa
      721 atttgaaaaa gctcgaaaaa agattatagg aaagagcatt aaaaaagaac gcttcgaatt
      781 taaattttgc tctttaaaaa gttatattga tatttatgaa gagcctaaaa tttgtatttt
      841 aaaaatattt tttccaactt tggatagttc caatgaattt aaaattccta aagattttaa
      901 aattcaaaaa gaattacatc atgatttaaa ttctaaacat atcgttttat atggtt
//
LOCUS       DARBAR010000188          941 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.189, whole genome shotgun sequence.
ACCESSION   DARBAR010000188 DARBAR010000000
VERSION     DARBAR010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.189"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..176)
                     /locus_tag="SB815_001749"
     CDS             complement(<1..176)
                     /locus_tag="SB815_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG0907453.1"
                     /translation="MSEFKIIDLRQEDLDILQEMIIEFAKYEDMLDFLQCTKEKLEHS
                     LLKNKFARAFLLKE"
     gene            307..441
                     /gene="rpmH"
                     /locus_tag="SB815_001750"
     CDS             307..441
                     /gene="rpmH"
                     /locus_tag="SB815_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEG0907454.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            438..764
                     /gene="rnpA"
                     /locus_tag="SB815_001751"
     CDS             438..764
                     /gene="rnpA"
                     /locus_tag="SB815_001751"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEG0907455.1"
                     /translation="MKNFDKFSTNEEFSSVYKIGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            761..>941
                     /gene="yidD"
                     /locus_tag="SB815_001752"
     CDS             761..>941
                     /gene="yidD"
                     /locus_tag="SB815_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEG0907456.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRILRCNPFFK"
BASE COUNT          347 a          118 c          140 g          336 t
ORIGIN      
        1 ttttctttta acaaaaaagc acgagcaaat ttatttttta gtaaagaatg ttccagtttt
       61 tctttcgtgc attgaagaaa atctaacata tcttcgtatt ttgcaaattc tatgatcatt
      121 tcttgtaaaa tatctaaatc ttcttgtctt aaatcaataa ttttaaattc tgacattttt
      181 aaccttttaa aaataatttc aaaatttatc aaaagaattt aaaaattact cttaatcaaa
      241 agcaatttat aagtaagatt aagataaaat acaagtttat tttataattt tttaaggaaa
      301 aatcaaatga aaagaactta tcagccacat ggcactccaa gaaaacgtac tcatggtttt
      361 cgtgttcgta tgaaaactaa aaatggtcgc aaggtgatca atgcaagacg cgctaaaggt
      421 agaaaaagac ttgctgtgtg aaaaattttg ataaatttag cacaaacgag gaattttcat
      481 ctgtatacaa aataggtaaa aaatggcatt gcgaaggtgt gattattttt tatctgaata
      541 gttatgaaaa aaaaatagca gttgttgcta gtaaaaaagt tggaaaagca gtggttagaa
      601 atcgttcaaa acgaatttta agggctttgt ttgctaagtt tgaaagatat cttcaagatg
      661 gcaaatatat ttttgtagct aaaaatgaaa tcactgaact ttctttttct aggttagaaa
      721 aaaatctaaa atggggattg aaaaaactag aatgtttcaa atgatatgcc taaaaatact
      781 ccgtttttat cagaaattct taagcccttt aaaacccgct gcttgtaggt attatcctag
      841 ttgttctgag tatgcgcttt ggcagtttca aaaaaagaat ttttttctag cttttttttc
      901 tacttttttt agaattttaa gatgcaaccc tttttttaaa g
//
LOCUS       DARBAR010000189          920 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.190, whole genome shotgun sequence.
ACCESSION   DARBAR010000189 DARBAR010000000
VERSION     DARBAR010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 920)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 920)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..920
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.190"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            5..>920
                     /gene="ribD"
                     /locus_tag="SB815_001753"
     CDS             5..>920
                     /gene="ribD"
                     /locus_tag="SB815_001753"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEG0907457.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDENKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHEIRAVIDLLV
                     VGGETIRKDCPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKIFKDEIDMFLIFQSSS"
BASE COUNT          340 a          140 c          160 g          280 t
ORIGIN      
        1 aaatatgtca aattttaaaa tacaaggtag gcaaatgaaa gaattttata tgaatttagc
       61 tttaaatgag gcttggaaat atcagttttt aacctatcca aatccggctg taggctgtgt
      121 aatcttagat aaaaatgaaa aaattttagc cataaaagct catgaaaaag ctggattagc
      181 tcatgcggaa cttaatgcca tagctcatgc ttttaaaagc ttaagacctg aaatttcatt
      241 gcccaaagaa gcaaacgcct tacatgagtt tatttgcaaa aaccatcaag gtgtatttaa
      301 agatagcata gcttttgtaa cgcttgagcc ttgctctcat caaggaaaaa cacctccttg
      361 tgcaaaactc tttagcgagc taggttttaa aaaaattttc atcagcgtta aagatgaaaa
      421 taaaatcgca agcggtgggg ctgaattttt aaaaaaacaa ggtatagagg ttgaatttga
      481 catacttaaa gaagaaggaa aaaaactttt aaaacctttt ttaaaatggc aaaaagggca
      541 atttaaactt tttaaattag ccctttctat gaacggctca ccttttggca aaatcgtaag
      601 caatgagcta agtcgcactt atgcacatga aattagagcg gtgattgatt tgcttgtagt
      661 cggtggagaa accataagaa aagattgccc tatattagat gctaggcttt gcaaagcaaa
      721 agcgcctaat ctttgtatct taagccgtca aaatatagat aattttgata aaaatatccc
      781 tttatttaaa gttccaaacc gccaaattta tacccaaatt ccaagtgaag ctaaattttt
      841 aatgtatgag ggtggagaaa attttctcaa aatctttaaa gatgaaatag atatgttttt
      901 gattttccaa agttcaagtt
//
LOCUS       DARBAR010000190          919 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.191, whole genome shotgun sequence.
ACCESSION   DARBAR010000190 DARBAR010000000
VERSION     DARBAR010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.191"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..>919
                     /locus_tag="SB815_001754"
     CDS             <1..>919
                     /locus_tag="SB815_001754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional anthranilate synthase component I
                     family protein/class IV aminotransferase"
                     /protein_id="HEG0907458.1"
                     /translation="IKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDTEF
                     KAFIKDETREILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKN
                     LSENVMICDLLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSRAQGKLKKNISLHQIF
                     KALFPCGSITGAPKLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFSVAIRTLEKQDE
                     IYTYSTGSGLVWDSKFKDEFEELKLKSAILNPCDFHLFETMYFKNSQILFLKEHLLRL
                     INSALKFNFNTHKLFKDFYNILNQKSSYKK"
BASE COUNT          376 a          134 c          112 g          297 t
ORIGIN      
        1 atcaaggtta aagaggcaat ctccaaagga agagtttatc aaatcaacct cactcaaaat
       61 tttaaatttc atagcaaaat ggattctttt gaacttttta aacttttact ttctagacaa
      121 gatactgaat ttaaagcttt tataaaagat gaaacaagag aaattttgtc cttctcacct
      181 gaacttttct tcaagaccaa aaaaagaaaa atatttacaa aacctatgaa aggcacaatt
      241 aagcgtgata aagatcctat aaaagatgaa gaaaataaaa ttttcttgca aaatgataca
      301 aaaaatctga gtgaaaatgt tatgatttgt gatcttttac gcaacgatct ttcaaaaatc
      361 atcacaaaaa aaagcttaaa aaccaaactt tttgaaattc aaagtcaccc tactttacat
      421 caaatgactt caagagcaca aggaaaactt aaaaaaaata tttctttaca tcaaattttt
      481 aaagctctct ttccttgtgg ttctattaca ggtgctccaa agcttgaaag cattaaattt
      541 attgaagaat tagaacaaag agatcgtggt atttactgcg gaactatagg tttaatacac
      601 aaaaataaaa ataaatttag cgtagccata cgcaccttag aaaaacaaga tgaaatttat
      661 acttatagca ccggtagtgg cttggtttgg gactcaaaat tcaaagatga atttgaagaa
      721 ttaaaactta aaagcgcaat cttaaatcct tgtgattttc atctttttga aaccatgtat
      781 tttaaaaatt ctcaaatttt atttttaaaa gaacatttat taaggcttat aaattcagct
      841 cttaaattta attttaatac tcacaagctc tttaaagatt tttataatat tttaaatcaa
      901 aaaagttctt ataaaaaat
//
LOCUS       DARBAR010000191          856 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.192, whole genome shotgun sequence.
ACCESSION   DARBAR010000191 DARBAR010000000
VERSION     DARBAR010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 856)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.192"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            10..606
                     /gene="plsY"
                     /locus_tag="SB815_001755"
     CDS             10..606
                     /gene="plsY"
                     /locus_tag="SB815_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012856041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEG0907459.1"
                     /translation="MIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNVLRVV
                     KEKNPKLAKKLAIATIILDFAKAAIPLLTLKFLHYDQALLWSVAVLAILGHCFSIYLL
                     FEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVVSSFIFN
                     YDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            591..>856
                     /locus_tag="SB815_001756"
     CDS             591..>856
                     /locus_tag="SB815_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEG0907460.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKANEFLNYAE
                     VITKIKTWYKKEEFYTLEESLDFVSLNLKKDFPNLTNLNIKIFKP"
BASE COUNT          315 a          113 c          125 g          303 t
ORIGIN      
        1 gaaaatttaa taatttacgc ttttatatat cttttaggtt caatcccttt tgggctaatc
       61 ctagctaaat tttttgctaa aactgatatc aaaaaagaag gttcaaaaag tataggagca
      121 accaatgttt taagagtagt aaaagaaaaa aatcccaaac tagcaaaaaa acttgccatt
      181 gctacaataa ttttagattt tgcaaaagca gctattcctt tattaacctt gaaatttctt
      241 cattatgatc aagctttgct ttggagcgtg gcagttttgg ctattttggg acactgtttt
      301 tcaatttact tgttatttga aggagggaaa ggcatagcaa caggagcagg tgctatgata
      361 gttttgcttc cattggaagt gcttacagca tttattgtat gggtagttat aggaaaaatt
      421 tttaaaatat cttcgttagc ttctttagca gcgttacttg cttttgttgt aagttctttt
      481 atatttaatt atgacttaga aattcataca catgcacccg ttttcattat cgcttttatt
      541 atagtatata aacatctacc taatattaaa agattgattt ttaaagaaga atgcaaagtc
      601 atataaaaat aaaatttcac tttaagtgta tcattggtat attagatttc gaaagaagga
      661 aaaaacaaaa aattattatc aagcttaaag ctaaagcaaa tgaattttta aattatgcag
      721 aagtaattac caaaattaaa acatggtata aaaaagaaga attttacacc cttgaagagt
      781 ctttagactt tgtaagctta aatttaaaaa aagattttcc taatttaacc aatcttaaca
      841 taaaaatttt caaacc
//
LOCUS       DARBAR010000192          852 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.193, whole genome shotgun sequence.
ACCESSION   DARBAR010000192 DARBAR010000000
VERSION     DARBAR010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.193"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..>852
                     /locus_tag="SB815_001757"
     CDS             <1..>852
                     /locus_tag="SB815_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SelB C-terminal domain-containing protein"
                     /protein_id="HEG0907461.1"
                     /translation="FDEAFILLQNNRVIGGGKVLNPLSEPLKKEQKNKFLMFLKNKDF
                     KAAFSFLKDAHKYGFGLLSSYQRFKLSHQKALKLAKELNQVFVDEKNLNVYHLQSLEE
                     IKNFIKFILEKNPYAMLSAHSLALRITWASENFCELGLKEMSNLLDFQNGIYFKKGID
                     FEKLQEKNNNQMYEILKKQGIKPEAPYNLYDFLELDRKSGDNILKKLTQKGLVVRLSH
                     NLFIEKQALEKLMQECLNLLKNQSLDVQSMKEYFNLSRKYAIAYLEYLDKFPQVSKEA
                     EKRFLTNI"
BASE COUNT          350 a          104 c          116 g          282 t
ORIGIN      
        1 tttgatgagg cttttatttt attacaaaat aatcgtgtta taggcggtgg taaggtttta
       61 aatcctttaa gcgaaccttt aaaaaaagaa caaaaaaata aatttttaat gtttttgaaa
      121 aataaagatt ttaaagcagc tttttctttc ttaaaagacg cacataaata cggctttggt
      181 ttgctttcaa gctatcagag atttaaactc tctcatcaaa aagcattgaa attagcaaaa
      241 gaattaaatc aagtatttgt tgatgaaaaa aatcttaatg tatatcattt acaaagccta
      301 gaagaaatta aaaatttcat caaattcata cttgaaaaaa atccttatgc catgctttca
      361 gcacattctt tagctttaag gattacttgg gcaagtgaaa atttttgcga acttgggctt
      421 aaagaaatgt caaatttatt ggattttcaa aatggaattt attttaaaaa aggtatagat
      481 tttgaaaaac ttcaagaaaa aaacaataac caaatgtatg aaattttaaa aaaacaaggt
      541 attaaacccg aagctcctta taatctttat gattttttag aacttgatag aaaaagcgga
      601 gataatatac tcaaaaaact tacccaaaaa ggcttggttg taagactttc acacaatctt
      661 tttatagaaa aacaagctct tgaaaaactt atgcaagaat gtttaaattt attaaaaaat
      721 caaagtcttg atgtgcaaag tatgaaagaa tattttaatc tttcaagaaa atatgctatt
      781 gcttatttag aatacttaga caaatttcct caagtaagta aagaagctga aaaaagattt
      841 ttaacaaaca tt
//
LOCUS       DARBAR010000193          844 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.194, whole genome shotgun sequence.
ACCESSION   DARBAR010000193 DARBAR010000000
VERSION     DARBAR010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.194"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            2..688
                     /gene="ung"
                     /locus_tag="SB815_001758"
     CDS             2..688
                     /gene="ung"
                     /locus_tag="SB815_001758"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEG0907462.1"
                     /translation="MTINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQNIII
                     YPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNIFKE
                     LQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHKLSN
                     EKSGLVFMLWGNYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFLKKV
                     GKIPIDWKIV"
BASE COUNT          348 a          102 c          123 g          271 t
ORIGIN      
        1 aattacaata aacatagata agattaaaat aaatgatgac tggaaagaat ttttaagaga
       61 cgaatttcaa aaaaaatatt ttctagaaat caaaaaacaa tacctaaatg cgattaatca
      121 aaatataatt atttatccac ctgcgaattt aatctttaat gcttttaatt tatgtccttt
      181 aaaagaaatt aaaattatta tcctaggaca agatccttat catcaaccaa atcaagcaat
      241 ggggcttagt ttttcggttc caaaaaatgt aaaaatccca ccaagtctta ataatatttt
      301 taaagaattg caaaatgatt taaacatcac tccagcaaaa agcggagatt taagctcttg
      361 ggcaaaacaa ggagttttgc tcttaaattc tattcttagc gttgaagcaa ataaagcagc
      421 tagccatagt tcgtggggtt ggcaagaatt tagtgatgct ataatacata aattaagtaa
      481 tgaaaaatca gggcttgttt ttatgctttg gggaaattac gcaaaaaaca aggagatttt
      541 gattgataat actaagcatt tgattttaaa agcagctcac ccaagccctt tagctagaac
      601 aggattttta ggttgtaagc atttttcaaa ggctaatgaa tttttaaaaa aagttggtaa
      661 aattcctata gattggaaaa tagtttaaaa aattatttta aactttaata aaaatattaa
      721 aatatattta tttaaaaata aatcatattt ctatgaaata tattgtaata aaacgactca
      781 aaaattaatt cttaaggaga aaaatgaaaa ccattggtat tataggcgga atgagttttg
      841 aaag
//
LOCUS       DARBAR010000194          844 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.195, whole genome shotgun sequence.
ACCESSION   DARBAR010000194 DARBAR010000000
VERSION     DARBAR010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.195"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            166..720
                     /locus_tag="SB815_001759"
     CDS             166..720
                     /locus_tag="SB815_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HEG0907463.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            736..>844
                     /locus_tag="SB815_001760"
     CDS             736..>844
                     /locus_tag="SB815_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheR"
                     /protein_id="HEG0907464.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILAL"
BASE COUNT          325 a           98 c          142 g          279 t
ORIGIN      
        1 tggtttccta attactatat aaaataagat aaaaacctaa tcttatcata ttaaatcata
       61 aaaacagctt ttctttgttt taaaaataag ctttattttt ctttatatat gttagaatca
      121 tgtgacaaga aaaataaaat ttcaataaat taagaggaga agaaagtgaa gctcatactc
      181 ataggatctt caacaggtgg tcctaatcag cttaaatttc ttttaaagga tattgatgta
      241 aaaaatactt gtgtagttat agctcagcac atgagtgcca gttttattcc atcttttgtg
      301 gggcaattta ataaagaagc ttttagtgaa gtgtgcttat tgaacgataa agagatatta
      361 agcaataaaa tttatatttg ccctaaaaat actattttat ctggaaattt aaatattgta
      421 gccgcttggc aagatgtggc ttcaagcttt aaaccgagtg tggatttact ttttcattcc
      481 gctgtttctt tggcaaaaac aaataaaata cttgctatta ttttaacggg catgggagat
      541 gatggcgcaa aaggtttatt tgagctttat aaaacaggag ttagatgttt atgtgagaat
      601 gaagcagata gcgtcgttta tggtatgcca aaaagagcaa aagatatgaa tccgcattta
      661 aaacctatga gcttaaaaga aattaaaaaa gaaattgtaa attttattga tcaggattaa
      721 taaaaggaaa attgcatgga aaaaaaaata actcctagcg aattggaact taatgaattt
      781 ataaaaatta tcaacgaaat gagtggtatt gatttaaccg ataaaaaaaa tatactagct
      841 ttaa
//
LOCUS       DARBAR010000195          836 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.196, whole genome shotgun sequence.
ACCESSION   DARBAR010000195 DARBAR010000000
VERSION     DARBAR010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 836)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.196"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..621)
                     /locus_tag="SB815_001761"
     CDS             complement(<1..621)
                     /locus_tag="SB815_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG0907465.1"
                     /translation="MKTVGVVIPIYNVEKYLRECLDSVVNQTYKNLQVVLVNDGSTDE
                     NSLNIAKEYTLKDERFILFDKENGGQSTARNVGIEFFSKEYDFKNITQELKENSLVEF
                     KLDNEDNPYNIYKIYKSSNFFKNKDELLNFKAPDIDYIIFLDSDDYWELNCIEECVPR
                     MDGVEVVWFDSCSIFEEGFKKQWSSLLKLYDLHEGVIKSKVWLEYSI"
     gene            complement(631..>836)
                     /locus_tag="SB815_001762"
     CDS             complement(631..>836)
                     /locus_tag="SB815_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-glucose 6-dehydrogenase"
                     /protein_id="HEG0907466.1"
                     /translation="LQEYNSNIELIIYEPLVKEKKFLNIKVENDFNVFGAKVDLIIAN
                     RFDDKLKEIKDKVFSADVFYTDI"
BASE COUNT          292 a          152 c           64 g          328 t
ORIGIN      
        1 tatactatac tccaaccaaa ctttagactt tataaccccc tcatgtaaat catataattt
       61 taacaaacta ctccattgtt tcttaaatcc ttcttcaaat atactacaac tgtcaaacca
      121 aaccacctca accccatcca ttctaggaac acattcttct atgcaattta attcccaata
      181 atcatcagaa tctaaaaaga taatataatc aatatcaggg gctttaaaat ttaaaagctc
      241 atctttgttt ttaaagaaat ttgaactttt atatatttta taaatattat aaggattatc
      301 ttcattgtct agtttaaatt ctactaaaga gttttctttt aattcttggg taatgttttt
      361 aaaatcatat tctttactaa agaattctat gccaacattt cttgctgtac tttgtccccc
      421 attttcctta tcaaaaagta taaatctttc atcttttaaa gtatattctt tggctatatt
      481 aagcgagttt tcatctgtac taccatcatt tacaagtaca acttgtaaat ttttataagt
      541 ttgattgaca acactatcta aacattctct taaatatttt tctacattat agattgggat
      601 aactacacct acagttttca cagtaatttc ctaaatatca gtataaaata catctgctga
      661 aaaaacttta tctttaatct ctttaagctt atcatcaaaa cgattggcta tgatcaaatc
      721 aactttagct ccaaaaacat taaaatcatt ctctacttta atatttaaaa attttttctc
      781 cttaaccaaa ggttcgtata ttattaattc aatattacta ttatattctt gtaaat
//
LOCUS       DARBAR010000196          817 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.197, whole genome shotgun sequence.
ACCESSION   DARBAR010000196 DARBAR010000000
VERSION     DARBAR010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.197"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..>817)
                     /locus_tag="SB815_001763"
     CDS             complement(<1..>817)
                     /locus_tag="SB815_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907467.1"
                     /translation="KALLQNKNHQHIVVFEKDIEIIWVIFHILDFSNELQSARLMVLE
                     NDKLQTQDYTELCSSKPFFQFSRIYFLELMSHYYERFHEDVLELNKKLAENFKNIILR
                     NGNDPKDALQGIEQFVYNLPQMITHPSYKELLSKRKNLSDTAIIVSTGPSLTKQLPLL
                     KKYASKATIFCADSSYPILAKHGIKPDYVCMLERTELTAEFFNHDFGEFDKDIVFICA
                     GVVHPKAIEYLKGRNLVITQKVLAFPYYINLKDFSYAAVGLSVAHTLSYLATYL"
BASE COUNT          309 a          123 c          101 g          284 t
ORIGIN      
        1 ttagataagt tgctagataa gataatgtat gtgcaacact aagtcctaca gcagcataag
       61 aaaaatcttt aagatttata taatatggaa aagcaagaac tttttgagtt atgactaaat
      121 ttctaccctt taaatactca atcgcctttg gatgaacaac accagcacaa ataaacacaa
      181 tatccttatc aaattctcca aaatcatgat taaaaaactc tgctgttaat tcagttcttt
      241 ccaacataca aacataatca ggttttatac catgtttagc taaaatagga taagaagaat
      301 ccgcacaaaa aatcgtagct ttactagcat acttttttaa taaaggcaat tgtttagtaa
      361 gagatggtcc tgtagaaaca atgatagctg tatcacttaa attttttctt ttggaaagta
      421 attctttata actaggatga gtgatcattt gaggaagatt ataaacaaat tgttctatgc
      481 cttgaagagc atcttttgga tcattaccat ttcttaaaat gatattttta aaattttctg
      541 ctaatttctt atttaactcc aaaacatctt catgaaatct ttcataataa tgactcatca
      601 gttctaaaaa ataaattcta gaaaattgaa agaaaggttt agaagaacaa agttcagtat
      661 aatcttgagt ttgtaattta tcattttcca aaaccatcaa tcttgcactt tgtaattcat
      721 ttgaaaaatc caagatatga aatatcaccc aaatgatttc tatatctttt tcaaaaacaa
      781 caatatgctg atgattttta ttttgtaata aagcttt
//
LOCUS       DARBAR010000197          812 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.198, whole genome shotgun sequence.
ACCESSION   DARBAR010000197 DARBAR010000000
VERSION     DARBAR010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 812)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.198"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..>812
                     /gene="pif1"
                     /locus_tag="SB815_001764"
     CDS             <1..>812
                     /gene="pif1"
                     /locus_tag="SB815_001764"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HEG0907468.1"
                     /translation="KILVVGDFFQLPPVIKEKKETLFNHSYYAFSSFFWQDLNFKNIK
                     LSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLEDDYTLLCGINKK
                     VNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWIRSLNILEELNIKIGARIIF
                     CVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTFFMEELEQSGKDF
                     VVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLYVALSRA"
BASE COUNT          305 a           87 c          128 g          292 t
ORIGIN      
        1 aaaaatttta gttgttggag atttttttca actgcctcca gtaattaaag aaaaaaaaga
       61 aactttattt aaccattctt attatgcttt ttcttcattt ttttggcaag atttaaattt
      121 taagaatatt aaactttctc aacctaaaag aacgcaaaat atggaatttt ataaccattt
      181 atctttgatt agacaaggtt ttttagatga aaaaatttta agcttttttg aatctttgcg
      241 aattgattat aaagaattag aaaatttaga agatgattat actttacttt gtggtatcaa
      301 taaaaaagta aacaatatca atcaagaaaa attaagcaaa cttgagaccc cgcttgtatg
      361 ctttaaggct caggttaaaa aagaagataa gagaataaaa gatgaagagc ttgattcttg
      421 gattagaagc ttaaatatat tggaagaatt aaatattaaa ataggcgctc gtattatttt
      481 ttgcgtaaat aattgggata agaattatta taatggagag caaggcatta tagaagatat
      541 tctttatgaa gaggagaaaa tttatattag cattattaaa aataatggga tgaaaatttt
      601 acttgaacct tatacttttt tcatggaaga acttgagcaa tcaggtaaag attttgttgt
      661 taatattctc gcaagtgtta cacagtttcc tattaaatta gcttatgcta ttactataca
      721 caaatcacaa ggtatgagta ttgaaaaatt agtgtgtgat attgatcata tttttgaaaa
      781 tggacagctt tatgtcgctc tttctcgcgc ta
//
LOCUS       DARBAR010000198          810 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.199, whole genome shotgun sequence.
ACCESSION   DARBAR010000198 DARBAR010000000
VERSION     DARBAR010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.199"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..618
                     /locus_tag="SB815_001765"
     CDS             <1..618
                     /locus_tag="SB815_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEG0907469.1"
                     /translation="IFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINL
                     EKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGE
                     WTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEG
                     KEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(615..>810)
                     /locus_tag="SB815_001766"
     CDS             complement(615..>810)
                     /locus_tag="SB815_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0907470.1"
                     /translation="KIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDN
                     FFEQGVKFEVISFDKFSLGF"
BASE COUNT          328 a          121 c          121 g          240 t
ORIGIN      
        1 atttttttta taaaaatgaa tgaaatgttt gatcaaagct ttaaaaaaat tgaacaagaa
       61 agagctttta tcgaagcctt ttttaaagat gcttacaaaa caggctttag gacttcaaac
      121 caaataaatc ttgaaaaact tatcacgata aaaaacaaat atcgcattga aaatctttat
      181 gattttgcag aatataaaaa acgtattcaa aaaattccaa aatccatggg tatagcccaa
      241 gctttagttg aaagtgctac aggtaccagt cgcttcgcaa gagaagcaaa caatcttttt
      301 ggagaatgga cttggggtga gaaaggttta attcctgatt taagacatcc agataaaaaa
      361 cacaaaatta aaatttttga tagtctgcaa gatagtgttg actcttatgt tttaaattta
      421 aatcgtcatt ttgcttatga aaagtttcgc gatgcaagag ctaaatttga aagcgaaggc
      481 aaagagataa cagggctaga ggctattaaa actttagatt cttattctga acgcaaggga
      541 tattatatca atcttattac aaaaatcatc aaacgataca accttgaaaa atacgataca
      601 aactcaaaca acacctaaaa tccaagtgaa aatttatcaa aagatatgac ttcaaattta
      661 accccttgtt caaaaaaatt atcctcgctt gaaagagtga taaaaatcac atgaaaaatt
      721 ccaagttcta aagcctttgg taaaattttc ttagcacgta gcttgatcaa atcaatatct
      781 aaagttggac ttgaaatata agcaatttta
//
LOCUS       DARBAR010000199          763 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.200, whole genome shotgun sequence.
ACCESSION   DARBAR010000199 DARBAR010000000
VERSION     DARBAR010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 763)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.200"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..266
                     /locus_tag="SB815_001767"
     CDS             <1..266
                     /locus_tag="SB815_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG0907471.1"
                     /translation="SSFWGSGGIYLEDIYIRENFRKKGYGKAVFKFLGEICKKENLKR
                     LDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGGNLEKLCDL"
     gene            263..>763
                     /locus_tag="SB815_001768"
     CDS             263..>763
                     /locus_tag="SB815_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEG0907472.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNVKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKNLGFKDYHIL
                     KGEVFAY"
BASE COUNT          277 a           84 c          123 g          279 t
ORIGIN      
        1 tttcgtcttt ttggggcagc ggtggaattt atcttgaaga tatttatata cgagaaaatt
       61 ttcgtaaaaa aggttatgga aaagctgtgt ttaaattttt aggagaaatt tgcaaaaaag
      121 aaaatttaaa aagactcgac tgggtttgct taaatgataa tattttaggt attaattttt
      181 atgaaagttt aaacgctaaa catcttaaac aatggagaaa ttatcgtcta agtggaggaa
      241 atttagaaaa attgtgtgat ttatgataag aagtctttac tatttaaaag ctatgggatt
      301 taactttgtt gatacacata caaaccactt tgaacaagta caaaattttc aagaattaaa
      361 acaacttgtt tcatcttgca ccttatgcca attttccaaa acaagaaaat ttagtcttat
      421 ggaacctaag ataaaaaatg tcaaattgct aattcttgat gtttttgggc aaaagagtga
      481 aaatgaaagc ggaattttac ttaattcaaa aaaaggtgaa aaattaaaac actatattta
      541 tcaaatttta gggctttgcg atgaagattt ttatttttct tatttattta aatgtttttg
      601 taatggaaaa tttgatgatt tttcgctaca atcttgctta ccatttttct ggaacgaact
      661 aaaactgatt caacctgctt ttttgctttg tctaggagaa tacacattta aaaacttggg
      721 atttaaagat tatcacattt taaaaggtga agtttttgct tat
//
LOCUS       DARBAR010000200          736 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.201, whole genome shotgun sequence.
ACCESSION   DARBAR010000200 DARBAR010000000
VERSION     DARBAR010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.201"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..731)
                     /gene="cmeD"
                     /locus_tag="SB815_001769"
     CDS             complement(<1..731)
                     /gene="cmeD"
                     /locus_tag="SB815_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HEG0907473.1"
                     /translation="MFEKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKE"
BASE COUNT          220 a          102 c          118 g          296 t
ORIGIN      
        1 ctttctttag caagattgat ttgttcttta gctatcatta cttcatagtt ttgacttttt
       61 tcttgttgcg gattttctaa aaaagcattc ccttgcactt taaaatctgt atcgcttaaa
      121 attttaatct ctttttgtat attggcaagt tttaattcat tttgactgag ctctaataag
      181 cttaaatggt atttagcctt aatgctttca agttcatctt tagggctaag tcctgcgtcg
      241 taaaattttt gcaatctttc aaaagttgat tttaaaaaag atactttttg ttgattggct
      301 agtaaaattt tttcaagact taaggtgtta aaataaagtg tgattgcatt tagggcaagg
      361 taatttttat tttgttcttt gtctaaaagg cttaattttt ctctgctttc taaagctctt
      421 aaattagcct ctctagcacc cccatcaaaa agcaaaaaat taagagaaac tttagcaaat
      481 aaactttctt gtggatcgat aatgaagcga tctttattgt tggctacata agctgagttt
      541 agactaagag agggtaggta atttctaaaa gcttgttctt tgtctaaatt tgcttgttcg
      601 ctttgcattt gcttaatgag ataggattca ttattttgac ttagtgctat aaattcgtgc
      661 aaattagaag ctaacattgc taagggataa agagctaaaa atatagctga ttttaaatat
      721 ttttcaaaca ttttga
//
LOCUS       DARBAR010000201          703 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.202, whole genome shotgun sequence.
ACCESSION   DARBAR010000201 DARBAR010000000
VERSION     DARBAR010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 703)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.202"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            23..448
                     /gene="exbB"
                     /locus_tag="SB815_001770"
     CDS             23..448
                     /gene="exbB"
                     /locus_tag="SB815_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HEG0907474.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVVERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            441..>703
                     /gene="exbD"
                     /locus_tag="SB815_001771"
     CDS             441..>703
                     /gene="exbD"
                     /locus_tag="SB815_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HEG0907475.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSL"
BASE COUNT          244 a           98 c          107 g          254 t
ORIGIN      
        1 aagtatattt ttggagaaaa atatggaatt tttaaaagat tacatcgatt taattatctt
       61 tttaattcta ggaattatgg catttatagc tttttggtgt gttgtagaaa gaatgctatt
      121 ttttagaaaa attaacttta aaaattatga gaatcaagag caatttgatg atgcgattag
      181 tgaaaattta accactatat atatcatcta ttccaatgcc ccttatatag gacttttagg
      241 cactgtaata ggcatcatgg ttacatttta cgaaatgggc ttggcgggca atatagatgt
      301 caaatctata gtcgtggggc tttctttagc tcttaaagct acagccttag gacttttggt
      361 tgctattcct gctttaatgg cttataatgc cttacttaga aaagtttccc tcttaagcaa
      421 tgcttataag gcaaataaaa atgcttaaac taccaaaaaa tgaaggttta aatatagtcc
      481 catttataga cattatgctt gttttgcttg ctatagtact tagtatttca acctttattg
      541 cgcatggaaa aattcaaatc tcacttcctt caagtgaaaa tgctaccaat ataagcaata
      601 atgaaaaaaa acttcttata accatagacg aaaaaaatac tttttattta aatgataaat
      661 tagctgattt aaatgaagtt caaaatgcta ttttttcact tga
//
LOCUS       DARBAR010000202          671 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.203, whole genome shotgun sequence.
ACCESSION   DARBAR010000202 DARBAR010000000
VERSION     DARBAR010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 671)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.203"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            15..356
                     /locus_tag="SB815_001772"
     CDS             15..356
                     /locus_tag="SB815_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEG0907476.1"
                     /translation="MTIYKLCKCGKKIQTHLRTCEECDKTFKKIANKRYDCFKRDKQS
                     SDFYNSVAWRKLRNAFINKNPFCIRCGKFAKIVDHIIPIKQGGKKLSEENLQSLCLAC
                     HNEKTKNELKG"
BASE COUNT          282 a           82 c          105 g          202 t
ORIGIN      
        1 aggattttac aaaaatgaca atttataaac tttgcaagtg tggtaagaaa atacaaactc
       61 atttaagaac ttgtgaagaa tgtgataaaa cttttaagaa aatagcaaac aaaagatatg
      121 attgttttaa aagggataag caaagttcag atttttataa tagtgtagct tggagaaaat
      181 taagaaatgc ttttataaat aaaaatccat tttgtataag gtgtggaaag tttgcaaaaa
      241 ttgtagatca cattatacct attaagcaag gtggcaagaa attaagtgaa gaaaatttgc
      301 aaagtttatg cttggcttgc cataatgaaa agactaaaaa cgagcttaag gggtagggta
      361 tgtaatctct atgaaagcca atcctataca ccgaagcggt agacacgaaa aaatgcgagc
      421 cagtttttta cataatgtta tacttaacct actaactaac taaccaaaac acaagcaaag
      481 caaggtaaaa tctttatttg aaatttttat ttttatcaaa agcgttctaa aaaagccaaa
      541 ttttgcttta aattaactaa cacgcatttt aacgccttaa aatatcatta aaatacaaat
      601 aaaaaaaggc gtttaatgca aaaagaattt ttaaacattg atgaggtttt gcaaatttta
      661 aacattaatt c
//
LOCUS       DARBAR010000203          647 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.204, whole genome shotgun sequence.
ACCESSION   DARBAR010000203 DARBAR010000000
VERSION     DARBAR010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.204"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..>647)
                     /locus_tag="SB815_001773"
     CDS             complement(<1..>647)
                     /locus_tag="SB815_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG0907477.1"
                     /translation="DVEKYSTLADFTKDDLKLIEKVLRKYNIPCDQLANNTVVSHCEY
                     LSEIMTELKMLNRLPYDFEERLSATFIPSRGEYQNFGIMAAIDHINALKDLVKRFPKL
                     ADLPKIYGGGSYGGYLALLIAKIAPWYVDGVIDNSGSAVPPLNYIIGRELEFKSKDTN
                     GDMYMQGDHFFVSCFLKTHWTRKENSPYFFNNENYFIRTLLNKDHLILQSQKNKN"
BASE COUNT          219 a          122 c           80 g          226 t
ORIGIN      
        1 atatttttat ttttttgact ttgcaaaatc aaatgatcct tatttaacaa tgttctaata
       61 aaataatttt cattattaaa aaaataaggt gaattttctt tacgcgtcca gtgggttttt
      121 agaaaacaac tcacaaaaaa atgatcgccc tgcatataca tatccccatt agtatctttg
      181 cttttaaatt ccaactctct accaataata taattaagcg gtggaacagc cgaacccgaa
      241 ttatcaatca cgccatccac ataccaagga gctatttttg ctatgagcaa ggctaagtat
      301 cctccataag accccccccc ataaattttt ggtaaatctg caagttttgg aaagcgttta
      361 actagatctt ttaaagcatt gatatgatca atagctgcca taatgccaaa attttgatat
      421 tctccacgcg aaggaataaa agttgcactt agtctttctt caaaatcata aggcaatcga
      481 tttaacattt ttaattctgt cataatctcg ctcaaatatt cacaatgact aactacagta
      541 ttattggcta attgatcaca tggaatattg tatttacgaa gcactttttc tattaatttt
      601 aaatcatctt ttgtaaaatc tgctaatgtt gaatactttt caacatc
//
LOCUS       DARBAR010000204          624 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.205, whole genome shotgun sequence.
ACCESSION   DARBAR010000204 DARBAR010000000
VERSION     DARBAR010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.205"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..>624
                     /locus_tag="SB815_001774"
     CDS             <1..>624
                     /locus_tag="SB815_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907478.1"
                     /translation="KILVELCKNNADNFFLLELYDESSKQSDIEKIFSPHFVRFFKAN
                     GAKEGVELLSIKAKQLRVEITQNALFTLFTSFDENLYLAASELNKFSGLRVDEKTIEQ
                     YCYSLNTGSFESFFDKILKKQDFKSELEKILDNFNEIALINSLYNSFYRLFKIALYAK
                     INGKIDFKELLGYTPPPQVGQNLSSQAFSLKIEQYKEIFTLLLKSEY"
BASE COUNT          235 a           86 c           90 g          213 t
ORIGIN      
        1 taaaatttta gtcgaacttt gtaaaaacaa tgcggacaat ttctttcttt tagagcttta
       61 tgatgaaagt tctaaacaaa gcgacataga aaaaattttc tctcctcatt ttgtaagatt
      121 ttttaaagct aacggagcta aagaaggcgt ggagctttta agcataaaag caaaacaact
      181 aagggttgaa atcactcaaa atgctttatt tactcttttt acaagttttg atgaaaactt
      241 gtatcttgct gcgagtgagc ttaataaatt tagtggttta agagtagatg aaaaaaccat
      301 agaacaatac tgctatagtt taaatacagg aagttttgaa agcttttttg ataaaatttt
      361 aaaaaaacaa gactttaaaa gcgaacttga aaaaatttta gataatttta atgaaattgc
      421 tttaatcaac tctttatata actcttttta tcgtttattt aaaattgcac tttatgctaa
      481 aatcaatggt aaaattgatt ttaaagagct tttaggctac actccacccc ctcaagtggg
      541 acaaaattta agctctcaag cctttagttt aaaaatcgaa caatataaag aaattttcac
      601 tcttttgctt aaaagcgaat acga
//
LOCUS       DARBAR010000205          610 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.206, whole genome shotgun sequence.
ACCESSION   DARBAR010000205 DARBAR010000000
VERSION     DARBAR010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.206"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..221)
                     /locus_tag="SB815_001775"
     CDS             complement(<1..221)
                     /locus_tag="SB815_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG0907479.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIG"
     gene            complement(368..>610)
                     /locus_tag="SB815_001776"
     CDS             complement(368..>610)
                     /locus_tag="SB815_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG0907480.1"
                     /translation="ITNLDQIRADIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDF
                     AAESANYSKANILAQSGSYAMAQANSVQQNVLRLLQ"
BASE COUNT          190 a          108 c          104 g          208 t
ORIGIN      
        1 atacctatag catcgttacc attgtttata gcttgaccta aagtcgctgc ttgtgaacgc
       61 aaagaatccg ctatagccat ccctgaagca tcatctgctg cggaattaat tctaagacct
      121 gaactaagtc tacttaaaga cttatccagt tctctagcat taacaactga atttgcatgt
      181 gcgtttaatg caccgatgtt agtgtttatc ctaaaaccca ttttaaatcc tttcaaaata
      241 ttgcatcgaa aagattaaag caagaagtgt tccaagtttt agtttaatta aaaattctag
      301 agtttaaaac aaaaaaagcc tagtattaaa ctaggcttgg atttgtatat attgcagctt
      361 tattaaatta ctgtagcaat cttaaaacat tttgttgaac agaattagcc tgtgccatgg
      421 cataagagcc actttgagct aagatatttg ctttagagta gtttgcactc tcagctgcaa
      481 agtctacatc acggatttgt gactcagctg ctttaacgtt tacttgagta acagtgatgt
      541 tgtttatagt tgatgtaact tgattttgca ctgaaccaat gtcagctctg atttgatcaa
      601 gatttgttat
//
LOCUS       DARBAR010000206          604 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.207, whole genome shotgun sequence.
ACCESSION   DARBAR010000206 DARBAR010000000
VERSION     DARBAR010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.207"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            15..>604
                     /locus_tag="SB815_001777"
     CDS             15..>604
                     /locus_tag="SB815_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG0907481.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSKTE
                     IQKRLDTYMPFLKSLNQEQKISYAREQAHIALASILYSANALNIASCTIGGFDKEKLD
                     SYLSLDIQKERSSLVVALGYCNDEKNPQKNRFSFDEV"
BASE COUNT          254 a           74 c           95 g          181 t
ORIGIN      
        1 tacaaggaaa aataatgaaa aaagaacttg aaatttttag cacaagatat tcttgtagaa
       61 attttaaaaa tgaaaaactc aaaaaagagg atttaaattc tattttagaa atagcaagat
      121 taagtcccag ctccttagga ctagaacctt ggaaatttat agtagtgcaa gatgagaaaa
      181 gaaaagaaga actttctaaa atttgcaacc aacaaaaaca tgtaaaagat tgcgctgcgt
      241 taattataat catttcaaga cttgattttt tggattattt tgaagaaaaa cttagaaaaa
      301 gagatatgag taaaacagaa attcaaaaac gcttagatac ttatatgcct tttttaaaat
      361 ctctaaatca agaacaaaaa atatcttatg caagagaaca agctcatata gctctagcta
      421 gcatacttta cagtgctaat gctttaaata tagcaagctg cactataggt ggttttgata
      481 aagaaaagct tgattcttat ttatcacttg atattcaaaa agaaagatca agtttggtag
      541 tggctttagg atattgcaac gatgaaaaaa atcctcaaaa aaatcgtttt agttttgatg
      601 aagt
//
LOCUS       DARBAR010000207          598 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.208, whole genome shotgun sequence.
ACCESSION   DARBAR010000207 DARBAR010000000
VERSION     DARBAR010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 598)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.208"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..>598)
                     /locus_tag="SB815_001778"
     CDS             complement(<1..>598)
                     /locus_tag="SB815_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907482.1"
                     /translation="ENNFNKNLKALSGFEYNNLRKKLEDLKELREFTFTQGKDNLNIN
                     IIKKRNLKKMYQDPIKELEKNLEYFKDFTRYPVLFFYGFGNGILYKILLQNQALKRII
                     IFEKELELIFLALNFIDFSKDLSLGRLIILHHDDINLPKMDKVFRLIGDLFYRSYNLH
                     IANDFYEHYKEDILKLNKLNMQIIKNHNLMRGNDPKDA"
BASE COUNT          206 a           77 c           75 g          240 t
ORIGIN      
        1 atggcatctt taggatcatt tccacgcata agattgtgat ttttgatgat ttgcatattg
       61 agtttattaa gttttaaaat atcttcttta tagtgttcat aaaaatcatt agcaatgtgt
      121 aggttataag aacgataaaa caaatcccct atcaaacgaa aaactttatc cattttagga
      181 agattaatat catcatgatg taaaataatg agtcgcccta agcttaaatc tttgctaaaa
      241 tctatgaaat ttaaagccaa aaagataagc tctaattctt tttcaaagat gattattctt
      301 ttaagtgctt gattttgaag tagaatttta tataaaattc catttccaaa accataaaaa
      361 aaaagcacag gatagcgtgt aaaatcttta aaatattcta aatttttttc aagctctttg
      421 atgggatctt gatacatttt ttttaaattt ctttttttta tgatattgat attaagatta
      481 tcttttcctt gagtgaaagt aaattctcta agctctttta gatcctcaag ttttttgcgt
      541 aagttgttat actcaaaacc gcttaaagct tttaaatttt tgttaaaatt attttctt
//
LOCUS       DARBAR010000208          574 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.209, whole genome shotgun sequence.
ACCESSION   DARBAR010000208 DARBAR010000000
VERSION     DARBAR010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.209"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            190..>574
                     /locus_tag="SB815_001779"
     CDS             190..>574
                     /locus_tag="SB815_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907483.1"
                     /translation="MGVNVRSTINTFVNNGLIAATNDGIQINANVKTLINKGTIKGHA
                     TSIRSLGGTIETLTNEGIMDGKSAGIYMSGGRVKTLINKGTINHTDSSVGWGAGIKLE
                     NGGTIENIINTGTVNSAGFGISVTHG"
BASE COUNT          215 a           76 c          121 g          162 t
ORIGIN      
        1 atcaataatt ttagtaatag tggaactatt cactctaatg ctggtgaaag tatttatttt
       61 ggtaacgcca atatatcaag ttttgttaat agtgggacta ttaagagtaa acaaggcgca
      121 ggagtaaata tatctcaagg aacaagtata gggaatttta acaatagcgg aactattgaa
      181 ggcaagagaa taggtgtaaa tgttcgttca acaataaata ccttcgtcaa taacggttta
      241 attgctgcaa cgaacgatgg aatacagata aatgctaatg taaaaacatt aataaataag
      301 ggaaccataa aaggacatgc tacatctata agatcattag gtggaactat agaaacattg
      361 accaatgaag gcattatgga tggtaaaagt gctggtattt acatgagcgg aggtcgtgtt
      421 aaaactctta taaataaagg taccattaat catacagaca gttcggtagg ttggggtgct
      481 ggtataaaac tcgaaaatgg tggtaccata gaaaatatca tcaacacagg aactgtcaat
      541 tctgctggtt ttggaatatc tgtaactcat ggta
//
LOCUS       DARBAR010000209          572 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.210, whole genome shotgun sequence.
ACCESSION   DARBAR010000209 DARBAR010000000
VERSION     DARBAR010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.210"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..499
                     /locus_tag="SB815_001780"
     CDS             <1..499
                     /locus_tag="SB815_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA recombination protein RecN"
                     /protein_id="HEG0907484.1"
                     /translation="KCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDINLAHLKN
                     LSSGELNRLRLAFIATECNILNTGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQI
                     FAISHLPQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAK
                     TLFKN"
BASE COUNT          220 a           57 c           98 g          197 t
ORIGIN      
        1 aaaatgttta aataattatc ttaaagatct ttatatgaaa gatgcaagtt tgacgcttaa
       61 agaaaatgaa aaaatttcaa ttttaggcaa agatgagata atgctagata ttaatttagc
      121 tcatttaaaa aatttaagtt cgggtgaatt aaatcgctta agacttgctt ttatagccac
      181 agaatgtaat attttaaata caggcaaagg gatattattt ttagatgaaa ttgatgcaaa
      241 tttaagcgga aaagaggcta tgagtatagc taaggtttta gaggaacttt ctaagtttta
      301 tcaaattttt gctatttctc atttgcctca actttcctct aaggcacata atcatttttt
      361 agttgaaaaa aatggtgaag aaagtaaggt aaaaaagctt gatcaagaag aaagaattaa
      421 agaacttgct aggatggtaa gtggagagct tgttagtgat gaagcgatcg aatttgctaa
      481 gaccttattt aagaattaag cggatttttt attttgctat gttaaaatat ataactataa
      541 aaatttcctt tcttttgaaa caaatataat aa
//
LOCUS       DARBAR010000210          560 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.211, whole genome shotgun sequence.
ACCESSION   DARBAR010000210 DARBAR010000000
VERSION     DARBAR010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.211"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..489)
                     /locus_tag="SB815_001781"
     CDS             complement(<1..489)
                     /locus_tag="SB815_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter"
                     /protein_id="HEG0907485.1"
                     /translation="MNKTALTKTYTKDIQNSCLNSKKIVLSLATISFLASCTHATLTP
                     EIKTYEETNRHAKARSGLQSRNSNNETINNLQTSTKTISGTGNTLVIESSGTITISNG
                     GQQAVNFQPNSSTSTFLNKGTLIGGNNTASVQLGANGNNGVNIETFDNQGIIGNGSSK
                     FGV"
BASE COUNT          177 a           80 c           80 g          223 t
ORIGIN      
        1 tactccaaat ttagaagaac cattgcctat gataccttga ttatcaaagg tttctatgtt
       61 aacaccgtta tttccatttg ctcctagttg aacactagca gtattatttc cacctataag
      121 agttccttta tttaaaaagg tagaagttga agaatttggt tgaaagttta ctgcttgttg
      181 cccaccatta gaaatagtaa tagttccact actttctata actagagtat tgccggtgcc
      241 acttatagtt ttagttgaag tttgtaaatt atttatagtc tcattattcg aatttctaga
      301 ttgaagacct gacctagctt tagcatgtct atttgtctct tcgtaagttt ttatttcagg
      361 agtaagtgta gcatgagtac aacttgccaa aaaagaaata gtagctaaag ataaaactat
      421 ctttttagaa tttaaacagg aattttgtat atcttttgtg tatgttttag ttaatgcagt
      481 tttattcata aatattccct ttccttttat atttatattt tcttgtttat atttaaaaat
      541 aatataaaac tataataaga
//
LOCUS       DARBAR010000211          556 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.212, whole genome shotgun sequence.
ACCESSION   DARBAR010000211 DARBAR010000000
VERSION     DARBAR010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 556)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.212"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..221)
                     /locus_tag="SB815_001782"
     CDS             complement(<1..221)
                     /locus_tag="SB815_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG0907486.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALG"
     gene            complement(318..>556)
                     /locus_tag="SB815_001783"
     CDS             complement(318..>556)
                     /locus_tag="SB815_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907487.1"
                     /translation="KVYQNIENFNHSLDEDEFIQDEVLRGAFAYRGKFIADVLKLHIQ
                     DKTHFITAYIKAYHEWLLYFIEKLEQKYKSLLKV"
BASE COUNT          190 a           98 c           69 g          199 t
ORIGIN      
        1 atacctaaag catcattacc attagatata gcttgaccta aagtattagc ttgagatctt
       61 aaactatctg ctatcgccat ccctgaagca tcatctgctg cggagttgat tctaagacct
      121 gaactaagtc tgcttaaaga agcatctaaa cttttactat ttaaatcagc gtttgcttta
      181 gcatttaaag ctgcaacatt ggtgttaata cgaaatccca ttttaaatcc ttttaaaaaa
      241 attcaagctc atccatgaac ttgttaaatg ctatatcgtg caatcaaaaa aatattttat
      301 actttagcaa taaaatttca tacttttaac aaagacttgt atttttgttc taacttttct
      361 ataaaataaa gcaaccattc atggtaagct ttaatataag ctgtgatgaa atgcgtttta
      421 tcttgtatat gaagtttcaa tacatcagcg ataaattttc cacgataagc aaaagctcct
      481 cttaaaactt catcctgtat aaactcatct tcatctaaag agtgattaaa attttctatg
      541 ttttgataga cttttt
//
LOCUS       DARBAR010000212          555 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.213, whole genome shotgun sequence.
ACCESSION   DARBAR010000212 DARBAR010000000
VERSION     DARBAR010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 555)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.213"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..228)
                     /locus_tag="SB815_001784"
     CDS             complement(<1..228)
                     /locus_tag="SB815_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0907488.1"
                     /translation="MFNKKDIIVNAVPVKLFASNLGLYDNFYRNVNELKSGFKIKQVG
                     NNFFVLLPDWFIKLLEIGYDCYVIKPYDDFKY"
BASE COUNT          239 a           70 c           48 g          198 t
ORIGIN      
        1 atatttaaaa tcatcataag gcttaatcac ataacaatca tatcctatct ctagcaattt
       61 tataaaccaa tcaggaagca aaacaaaaaa attatttcct acttgtttga ttttaaaacc
      121 acttttaagc tcatttacat ttctataaaa attatcatac aaacctaaat tacttgcaaa
      181 aagcttaacg ggaactgcat taacaataat atctttttta ttaaacataa gaagtcttta
      241 agtaattaac aaacgaagct ttaaggaatg atatttttat ttaaaaatta taatatataa
      301 aaaataataa aactattaat caaagattaa attagcaatt atggaatact tattgctctt
      361 tactaagaaa gcaaaaaaac aaaaaccatt ttttatattt ttatacaaac actattatat
      421 taaaaagcac tggcaaagat tatcgtattg tttttaatcg gattttaata aaagcacata
      481 tcatttttaa tcggatttta agaaatatgt ttataggcat tttaatcgga ttttaatatt
      541 aaaaaatcat attag
//
LOCUS       DARBAR010000213          534 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.214, whole genome shotgun sequence.
ACCESSION   DARBAR010000213 DARBAR010000000
VERSION     DARBAR010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 534)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 534)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..534
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.214"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..>534
                     /locus_tag="SB815_001785"
     CDS             <1..>534
                     /locus_tag="SB815_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907489.1"
                     /translation="IQNKTCSRFNIDENLNIFDKTHNVFMYENLEEEINFFYQSILEK
                     TPRYPFICIYGIGNALLIKNLAKHYKHLFVFESEIELFILALSTIDLSEELCSGKIYL
                     VDIEEERVDIQLLILFDMKDMFEYLSLYEMFVNNVYYKKFYEDVWHKADELCEKNIKV
                     VIRNLNSSLCIGFECYSH"
BASE COUNT          196 a           46 c           88 g          204 t
ORIGIN      
        1 atacaaaata aaacttgctc tcgttttaat atagatgaaa atttaaatat ctttgataaa
       61 actcataatg ttttcatgta tgaaaactta gaagaagaaa taaatttttt ctatcaaagt
      121 attttagaaa aaactcctag atatcctttt atatgtattt atggtatagg caatgcttta
      181 ctgattaaaa atttagctaa acactataaa catctttttg tatttgaaag tgaaatagaa
      241 ctttttattc tagctttaag tacgatagat ttgagtgaag agctttgtag tggaaaaatt
      301 tatcttgtgg atatcgaaga agaaagagta gatattcaac tgcttatact ttttgatatg
      361 aaagatatgt ttgagtactt aagtttgtat gaaatgtttg tgaataatgt ttattataaa
      421 aagttttatg aggatgtctg gcataaagca gatgagcttt gcgagaaaaa tataaaagtt
      481 gtgataagaa atttaaattc tagtttatgt atcggttttg agtgttattc tcat
//
LOCUS       DARBAR010000214          530 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.215, whole genome shotgun sequence.
ACCESSION   DARBAR010000214 DARBAR010000000
VERSION     DARBAR010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 530)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.215"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..>530)
                     /locus_tag="SB815_001786"
     CDS             complement(<1..>530)
                     /locus_tag="SB815_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG0907490.1"
                     /translation="DVEKYSAYKYFQEEDIENIKNLLNQFHFSYGEINNDNALFLANS
                     LVKHVENLKMQNKLDHNFKLNFTSTFIPPNGDYQNYGIMAAIDHINALKDLVKRFPKF
                     ADLPKIYGGGSYGGYLALLIAKIAPWYVDGVIDNSGSALPPLNYILGREMEHSYGDYY
                     EDFPHNRIIFFLKTHWT"
BASE COUNT          185 a           91 c           69 g          185 t
ORIGIN      
        1 gtccagtggg tttttagaaa aaaaataatc ctattatgtg gaaaatcttc ataataatca
       61 ccgtaactat gttccatttc tcttcctaaa atataattta aaggtggcaa agccgaaccc
      121 gaattatcaa tcacaccatc cacataccaa ggagctatct ttgctatgag caaggctaag
      181 tatcctccat aagacccccc cccataaatt tttggtaaat ctgcaaattt tggaaagcgt
      241 ttaactagat cttttaaagc attgatatga tcaatagctg ccataatgcc atagttttga
      301 taatctccat taggtgggat aaaagttgaa gtaaaattta gtttaaagtt atgatcgagt
      361 ttattttgca tttttaaatt ttctacatgt ttcactaaag aattcgctaa aaaaagcgca
      421 ttatcattat ttatttcacc ataagaaaaa tgaaactgat ttaataaatt tttaatattt
      481 tcaatatctt cctcttgaaa atatttgtat gcactatatt tctcaacatc
//
LOCUS       DARBAR010000215          518 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.216, whole genome shotgun sequence.
ACCESSION   DARBAR010000215 DARBAR010000000
VERSION     DARBAR010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.216"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..423
                     /locus_tag="SB815_001787"
     CDS             <1..423
                     /locus_tag="SB815_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG0907491.1"
                     /translation="NINMQRINKIIENPVIYYYFSRGARARLQNQLVYRLGKVVVEAK
                     SFNKIIKLPFLMLKICLEHNFEHKVYRSIVQFRPDLKLLPLECYLDYHEALVIKEHLS
                     YKFGKLILLSFKGWYKGKIFILPFMLKKRYKEYKNKMI"
BASE COUNT          191 a           46 c           86 g          195 t
ORIGIN      
        1 aatataaata tgcaaagaat taataaaata attgaaaatc ctgtaatata ttattatttt
       61 tctagaggag ctagagctcg tttgcaaaac cagctggtat atagattggg taaagttgtt
      121 gttgaggcaa agtcatttaa taaaattatt aaattacctt ttcttatgct caaaatttgc
      181 cttgagcata attttgagca taaagtttat aggtctattg tacaatttag accagatttg
      241 aagcttcttc cattagagtg ttatttggat tatcatgaag cattagttat aaaagagcat
      301 ttatcttata aatttggaaa attgattttg ctttctttta agggatggta taaagggaag
      361 atttttattt tgccatttat gttaaaaaaa agatataagg aatataagaa taagatgata
      421 taatattttt ggcagtttgt tttaaaggat gttttaatgc agcgatttaa aaaatggttt
      481 ttgtctatca taaaaaattt caagcaacat gaaaaaat
//
LOCUS       DARBAR010000216          502 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.218, whole genome shotgun sequence.
ACCESSION   DARBAR010000216 DARBAR010000000
VERSION     DARBAR010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 502)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.218"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            127..>502
                     /locus_tag="SB815_001788"
     CDS             127..>502
                     /locus_tag="SB815_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEG0907492.1"
                     /translation="MTYNEKIISMNNDLLDHQHKELFEISKKLSLMNQRHVGTKELKI
                     VLRELLIMINRHFSDEEAFMREIEYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVK"
BASE COUNT          230 a           57 c           51 g          164 t
ORIGIN      
        1 taaaaaatat ataaattata aatactttaa taataataat ttttatataa ttaattaata
       61 aaattttaag tattatagca ttataatccg ctctcaaaaa atataaatat aaaagtactc
      121 aaaaccatga cttataatga aaaaattatt tcaatgaata atgatctttt agatcatcaa
      181 cataaagaac tttttgaaat ttctaaaaaa ctctctttaa tgaaccaacg tcatgttgga
      241 acaaaagaat taaaaattgt cttaagagag ttgttaataa tgatcaatag acatttttca
      301 gatgaagaag cctttatgag agaaatagaa tatccttata tcaaccatca tacaagaatt
      361 cacagaaaaa ttatcttaga aattgaagaa attatcatca gtgaagctaa atttgtaaat
      421 ataatgaccg aaaaattaaa tctcgttgtt caagatttta tctttaaaca tacagccaaa
      481 gaagattcaa aaatagtaaa gt
//
LOCUS       DARBAR010000217          500 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.219, whole genome shotgun sequence.
ACCESSION   DARBAR010000217 DARBAR010000000
VERSION     DARBAR010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.219"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..490)
                     /locus_tag="SB815_001789"
     CDS             complement(<1..490)
                     /locus_tag="SB815_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEG0907493.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLGQLCFKEKPSKLIFIG
                     TCGLYDKGKILEIYKSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQK"
BASE COUNT          175 a           83 c           59 g          183 t
ORIGIN      
        1 ccttttgatg attttttata aaatcttcgt gagcgttttc attgcaaaaa tttgttgcac
       61 acaaaataca ctctgcatca atatttaaat ttttagctac acttaaaaca gaaaaggctt
      121 ccatattttc tgcaaaaaaa cctaatttcg aaaattcttt tgctgctttt gaattttgac
      181 aaatataatt tgaagaattg atcttgattg tttcacgaga aacattttct ttttctaaac
      241 aaatttcata ttttgcagga gtataaaaag catgtgaaat tttagaaaat tctacattaa
      301 aagcgtgtga acttttgtaa atttctaaaa ttttaccctt atcgtaaagc ccacaagttc
      361 ctataaatat aagttttgat ggtttttctt tgaagcaaag ttgacccaaa tgaaaagctg
      421 attcaaccaa acctatacct atagcttttg caaaagaaaa attttcattt ccacccgcac
      481 aaacaatcat tttgatcctt
//
LOCUS       DARBAR010000218          475 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.221, whole genome shotgun sequence.
ACCESSION   DARBAR010000218 DARBAR010000000
VERSION     DARBAR010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.221"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            81..>475
                     /locus_tag="SB815_001790"
     CDS             81..>475
                     /locus_tag="SB815_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlgG"
                     /protein_id="HEG0907494.1"
                     /translation="MITQTMQSKESKESKENSKISFANAFLKQNASKLNEIQNANSQT
                     LARSEALNSTNTTNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKYKQVDISNTSTN
                     TAYGYSVDKDGYMGSDFNKAAGLPEDFKI"
BASE COUNT          203 a           53 c           67 g          152 t
ORIGIN      
        1 ttgcttatat tattttaata tatttaggtt gaaggcaaaa aatctaaatc aaggaattaa
       61 tatgagtatc tttagtatca atgataactc aaactatgca aagtaaagag agtaaagaaa
      121 gtaaagaaaa ttctaaaata agttttgcta atgctttttt aaaacaaaat gctagtaagt
      181 taaatgaaat tcaaaatgca aattcacaaa ctctagcaag aagtgaagca ttaaattcta
      241 ctaatacaac aaatactagc aataatacta attttagtat aagtagtaag acaagttctc
      301 ctaattatga tatatctagt gaatttaaaa actctattta tactctaaaa tacaaacaag
      361 tagatataag taatacttct actaatacag cctatggtta tagtgtagat aaagatggtt
      421 atatgggaag tgattttaat aaagctgcgg gacttcctga agattttaag ataca
//
LOCUS       DARBAR010000219          446 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.222, whole genome shotgun sequence.
ACCESSION   DARBAR010000219 DARBAR010000000
VERSION     DARBAR010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 446)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.222"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..>446
                     /locus_tag="SB815_001791"
     CDS             <1..>446
                     /locus_tag="SB815_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907495.1"
                     /translation="LNKQNEFLLKAYYKVYQSIQHCRDFSKILSNDFEKIQSIYLSLN
                     EKEEYLNLAIEKIDGFKNKLEDIKQMQDLYEILQPLRTQFELNLARIYVLNPKTKEDA
                     FNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEKLKERKLD"
BASE COUNT          199 a           40 c           58 g          149 t
ORIGIN      
        1 tttaaataaa caaaatgagt ttttacttaa ggcttattat aaagtttatc aaagtattca
       61 acattgtaga gattttagta aaatactcag caatgatttt gaaaaaatac aaagtatata
      121 tttgagttta aatgaaaaag aagaatattt aaatttagct attgaaaaaa tagatgggtt
      181 taaaaataaa cttgaagata taaaacaaat gcaagattta tatgaaattt tacaacctct
      241 gcgtactcaa tttgaactta atcttgctag aatttatgtc ttaaatccta aaaccaaaga
      301 agatgctttt aataaaagta ttctttggat aaaagaacat ttagaattta tggaattagt
      361 ttatggacat attaaagcac aagaaaatgc tttgattaaa aatatacttc ctttagaaga
      421 aaaacttaaa gaaagaaaat tagata
//
LOCUS       DARBAR010000220          406 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.224, whole genome shotgun sequence.
ACCESSION   DARBAR010000220 DARBAR010000000
VERSION     DARBAR010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 406)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.224"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            7..95
                     /locus_tag="SB815_001792"
     tRNA            7..95
                     /locus_tag="SB815_001792"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:41..43,aa:Leu,seq:taa)
     gene            114..187
                     /locus_tag="SB815_001793"
     tRNA            114..187
                     /locus_tag="SB815_001793"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:146..148,aa:Cys,seq:gca)
     gene            209..296
                     /locus_tag="SB815_001794"
     tRNA            209..296
                     /locus_tag="SB815_001794"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:243..245,aa:Ser,seq:tga)
BASE COUNT          108 a           98 c           90 g          110 t
ORIGIN      
        1 tcacccgccc gggtggtgga attggtagac acaagggact taaaatccct cggaattttt
       61 cttccgtgcc ggttcaagtc cggcctcggg caccactttt tcaacattat cagggcgaca
      121 tagccaagcg gtaaggcatg ggcctgcaaa gccttgatct ccggttcgaa tccggatgtc
      181 gcctccaaaa ggcaaaactt tactttatcg ggagatggct gagtggtcga aagcggcggt
      241 cttgaaaacc gttgagggtc acacctccag gggttcgaat ccctttctcc cggccaccaa
      301 gactttctag tttatcaagc ttatattatt cctgaaatta taaaggatac tacaaatgaa
      361 aaataatact tcggtcttac tatttttgtt atatcctaaa aaaact
//
LOCUS       DARBAR010000221          377 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.225, whole genome shotgun sequence.
ACCESSION   DARBAR010000221 DARBAR010000000
VERSION     DARBAR010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 377)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 377)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..377
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.225"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            22..>377
                     /locus_tag="SB815_001795"
     CDS             22..>377
                     /locus_tag="SB815_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG0907496.1"
                     /translation="MMNYNTPKVSIVVPSLNSISYIRECIDSILNQTLKDIEILCIDA
                     NSTDGTLEVLKNYEKKDKRLRVIISDKKSYGYQMNLGIKEAKGEYLGIVESDDYIKTN
                     MYERLYEIAKKNDCEVV"
BASE COUNT          163 a           27 c           66 g          121 t
ORIGIN      
        1 taaaaaataa gcaaggatga aatgatgaat tataatactc caaaagtttc tattgttgta
       61 ccttcattaa attctatatc atatataaga gaatgtattg atagtatatt aaatcaaact
      121 ttaaaagata ttgagatact ttgtattgat gcaaattcaa ctgatggaac tttagaagtt
      181 ttaaaaaact atgaaaaaaa agataagagg cttagggtaa taatatcaga taagaaaagt
      241 tatggttatc aaatgaatct tggtataaaa gaggcaaagg gagaatatct tggtatagtt
      301 gaaagtgatg attatattaa aacaaatatg tatgaaagac tttatgaaat tgctaaaaag
      361 aatgattgtg aagttgt
//
LOCUS       DARBAR010000222          346 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.227, whole genome shotgun sequence.
ACCESSION   DARBAR010000222 DARBAR010000000
VERSION     DARBAR010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 346)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 346)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.227"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..>346
                     /locus_tag="SB815_001796"
     CDS             <1..>346
                     /locus_tag="SB815_001796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907497.1"
                     /translation="LKKYANKATIFCADSSYPILAKHGIKPDYVCMLERKAITAEFFN
                     HDFGEFDNGICFIIKSIVHPNAINYLTKKTDNFTIVSTYASFIQYLKLDYFGYFNMGF
                     SVAHMACYLSLHL"
BASE COUNT          119 a           45 c           46 g          136 t
ORIGIN      
        1 ttaaaaaaat atgctaataa agctacaatt ttttgtgcgg attcttctta tcctatttta
       61 gctaagcatg gtataaaacc tgattatgtt tgtatgctag aaagaaaagc tattacagca
      121 gaatttttta atcatgattt tggggaattt gataatggaa tttgttttat tatcaaatcc
      181 atagtacatc ctaatgccat aaattaccta accaaaaaaa ccgataattt tactatagtt
      241 tcaacctatg caagttttat acaatattta aaattagatt attttggata ttttaacatg
      301 ggatttagtg ttgcacatat ggcttgttat ctttccttac atttaa
//
LOCUS       DARBAR010000223          331 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.228, whole genome shotgun sequence.
ACCESSION   DARBAR010000223 DARBAR010000000
VERSION     DARBAR010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.228"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..>331)
                     /locus_tag="SB815_001797"
     CDS             complement(<1..>331)
                     /locus_tag="SB815_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907498.1"
                     /translation="YKHLFVFESEIELFILALSTIDLSEELKVYKIVLFDCVAKDLEI
                     QIAMIFDQQSILEYLSLYEMFISSHYYLKYYEASILFVNELCIKSASVAIRNADITCF
                     LPLLTHGQ"
BASE COUNT          131 a           56 c           32 g          112 t
ORIGIN      
        1 ctgtccatgt gttagcaaag gtaaaaaaca tgtaatatct gcatttctta ttgctacact
       61 tgcactttta atacaaagtt catttacaaa taaaatagaa gcttcatagt atttaagata
      121 ataatgcgag ctaataaaca tttcatataa acttaaatac tctaaaatac tttgctgatc
      181 aaaaatcata gcaatttgaa tttctaaatc ctttgcaaca cagtcaaata atacaatctt
      241 ataaactttc aactcttcac tcaaatctat cgtgcttaaa gctagaataa aaagttctat
      301 ttcactttca aatacaaaca gatgtttata g
//
LOCUS       DARBAR010000224          302 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.229, whole genome shotgun sequence.
ACCESSION   DARBAR010000224 DARBAR010000000
VERSION     DARBAR010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.229"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            106..>302
                     /locus_tag="SB815_001798"
     CDS             106..>302
                     /locus_tag="SB815_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEG0907499.1"
                     /translation="MHQPTLRVLNILELLAKEKLTLSAIAKKLNIPAGTLWPILQTLQ
                     EKKYIKCDLKNKSYYLDFKII"
BASE COUNT          142 a           32 c           32 g           96 t
ORIGIN      
        1 caaaaaaaat attaaaatta ataaataata aaaattatga ttttatgtta ctaaaagtaa
       61 aaaatatgct aaaatttata aaaataaaat aaggataaag acaatatgca tcagcccact
      121 cttagagtgt taaatattct agaattactt gcaaaagaaa agcttacctt aagtgctata
      181 gctaaaaaat taaacattcc tgctggaact ctttggccta ttttacaaac tcttcaagaa
      241 aaaaaatata tcaaatgtga tttaaaaaat aaaagttatt atttggattt taagattata
      301 ga
//
LOCUS       DARBAR010000225          236 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.230, whole genome shotgun sequence.
ACCESSION   DARBAR010000225 DARBAR010000000
VERSION     DARBAR010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 236)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 236)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.230"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..>236)
                     /locus_tag="SB815_001799"
     CDS             complement(<1..>236)
                     /locus_tag="SB815_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HEG0907500.1"
                     /translation="ELLSTFFKSKLQEKNHIVLGDAYIICLLLGENKKALEISQKLQK
                     AGFFAPAIKEPTVPKNTARIRFSLHAGLNTEELE"
BASE COUNT           72 a           38 c           41 g           85 t
ORIGIN      
        1 ctttcaagtt cttctgtgtt aagtcctgcg tgcaaagaaa aacgaattct ggctgtattt
       61 tttggcacgg taggttcttt gatcgcagga gcaaaaaaac cagctttttg aagtttttgt
      121 gaaatttcta aggctttttt attttcacct aaaagcaagc aaataatata agcatcgcct
      181 aaaacgatgt gatttttttc ttgcaattta cttttaaaaa aagtgcttaa aagctc
//
LOCUS       DARBAR010000226          233 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.231, whole genome shotgun sequence.
ACCESSION   DARBAR010000226 DARBAR010000000
VERSION     DARBAR010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 233)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 233)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..233
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.231"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            <1..>233
                     /locus_tag="SB815_001800"
     CDS             <1..>233
                     /locus_tag="SB815_001800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907501.1"
                     /translation="KQSIIALECATHPNIVRSLNAENCMIVLRNKALYQRFNLNDFGY
                     IDTGTHVSHFSYTLALALGFKNIIMIGQDLAFD"
BASE COUNT           71 a           34 c           39 g           89 t
ORIGIN      
        1 taaaacaaag catcattgct cttgagtgtg ctacgcatcc taatatcgtg cgtagcttaa
       61 atgctgaaaa ttgtatgatt gttttaagaa ataaagccct ttatcaacgc ttcaatctta
      121 atgactttgg ttatattgat acaggtactc atgtaagtca tttttcttat actttagctt
      181 tggctttagg atttaaaaat attattatga tagggcaaga tttagccttt gat
//
LOCUS       DARBAR010000227          224 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.232, whole genome shotgun sequence.
ACCESSION   DARBAR010000227 DARBAR010000000
VERSION     DARBAR010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 224)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 224)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..224
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.232"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..>224)
                     /locus_tag="SB815_001801"
     CDS             complement(<1..>224)
                     /locus_tag="SB815_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907502.1"
                     /translation="TSLNMLSCATHPSLVHFLDNKSVVLRDDPLYQRFNLNDFGYIDT
                     GTHVSHFSYTLALALGFKNIIMIGQDLAFD"
BASE COUNT           89 a           33 c           36 g           66 t
ORIGIN      
        1 atcaaaggct aaatcttgtc ctatcatgat gatattttta aatcctaaag ccaaagctaa
       61 ggtataagaa aaatgactta catgagtgcc tgtatcgata tagccaaagt cattaagatt
      121 gaagcgttgg tataaaggat catctcttaa aactacactt ttattatcta aaaaatgaac
      181 caaactagga tgagtagcac atgaaagcat atttaaagaa gttt
//
LOCUS       DARBAR010000228          223 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.denovo.233, whole genome shotgun sequence.
ACCESSION   DARBAR010000228 DARBAR010000000
VERSION     DARBAR010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..223
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.denovo.233"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            complement(<1..>223)
                     /locus_tag="SB815_001802"
     CDS             complement(<1..>223)
                     /locus_tag="SB815_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0907503.1"
                     /translation="YESQMYEHILTEAYGGNGKVETHSIWLLFKNWFENEMIPNTRKM
                     GITTYNCTEGGARIEGTIEKPFLWACENLL"
BASE COUNT           65 a           46 c           27 g           85 t
ORIGIN      
        1 aagtaaattc tcacaagccc ataaaaaagg tttttctatg gttccttcta tccttgctcc
       61 accttcggta cagttgtagg tggtgatacc catttttcta gtatttggaa tcatttcatt
      121 ttcaaaccaa tttttaaata aaagccatat actatgagtt tcaacttttc catttcctcc
      181 ataagcctcg gttaaaatat gttcatacat ttgactttca taa
//
LOCUS       DARBAR010000229         1929 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 155
            SAMN14118079-rid18152283.guided.164, whole genome shotgun sequence.
ACCESSION   DARBAR010000229 DARBAR010000000
VERSION     DARBAR010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118079
            Sequence Read Archive: SRR11101780
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750838.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750838.1
            Genome Coverage       :: 274x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/22/2023 23:43:45
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,804
            CDSs (total)                      :: 1,767
            Genes (coding)                    :: 1,720
            CDSs (with protein)               :: 1,720
            Genes (RNA)                       :: 37
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 31
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 47
            CDSs (without protein)            :: 47
            Pseudo Genes (ambiguous residues) :: 0 of 47
            Pseudo Genes (frameshifted)       :: 40 of 47
            Pseudo Genes (incomplete)         :: 7 of 47
            Pseudo Genes (internal stop)      :: 6 of 47
            Pseudo Genes (multiple problems)  :: 6 of 47
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1929
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118079-rid18152283.guided.164"
                     /isolate="155"
                     /isolation_source="Chicken environment"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 21"
     gene            187..960
                     /locus_tag="SB815_001803"
     CDS             187..960
                     /locus_tag="SB815_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HEG0907504.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(1045..1929)
                     /locus_tag="SB815_001804"
     CDS             complement(1045..1929)
                     /locus_tag="SB815_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEG0907505.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
BASE COUNT          691 a          250 c          281 g          707 t
ORIGIN      
        1 aagcaaaaaa ctagcatata atttttcata aatagtaaat gaatgataaa gtaagttata
       61 tttaatcgat ggattgcttt aatggttaca attttagaaa atttcagttc atgttaaagg
      121 atatttaaag aaaataaagc tttaaaaagt attttgttta aaattattta aatagaaaga
      181 tattttatga aaaaaataac tttattttta cttttcttaa atttagtgtt tgggcaagat
      241 aagatattaa ataattggtt taaagagtat aatacaagcg gcacttttgt tttttatgat
      301 ggaaaaactt gggcgagtaa cgacttttca agggctatgg agactttctc tcccgcttcc
      361 acttttaaaa tttttaatgc tctaattgca cttgatagtg gtgtgataaa aactaaaaaa
      421 gaaatttttt atcactatag aggtgaaaaa gtatttttat cttcttgggc gcaagatatg
      481 aatttaagtt cagctataaa atattctaat gttcttgctt ttaaagaagt ggcaagaaga
      541 attggtatca aaactatgca agaatattta aacaagcttc attatggtaa tgctaaaatt
      601 tccaagatcg atactttttg gcttgacaac tcactaaaaa taagcgctaa agaacaagca
      661 attttgcttt ttagactttc acaaaatagc ttaccttttt ctcaagaagc aatgaatagt
      721 gttaaggaaa tgatttattt aaaaaatatg gaaaatttag agctttttgg aaaaacaggt
      781 tttaatgatg agcaaaaaat tgcttggatt gtaggttttg tgtatttaaa agatgaaaat
      841 aaatataagg ctttcgcgct aaatttagat attgataaat ttgaagattt atataaaaga
      901 gaaaaaattt tagaaaaata tttagatgaa cttgtaaaaa aagttaaaaa tgatggctag
      961 tgagtatttc gtaaaatgca aaaatactta attgtatgat ttgcgtacac ttaaagtact
     1021 cattaaaaaa ttaaattttt gctcttattt atcaagtttt cctacgatga tagggttaaa
     1081 ggcttttatg gatagcaaaa gcgtatcgcc gatttttaca tcttgataag cttttagaaa
     1141 ttcctcttca ctaagagtga ttttaataat atcttgattt aaaagcaagg ttaaaaccac
     1201 taaaatatca ctttttttaa tttctagcaa agttgcactt aagcgtaatt ttgcgctgat
     1261 atttgaatga gtaaaaaatt catttttagg aaaatcttta ataatttttc cgtttttaag
     1321 ctctaaaatt ctatgactta acttataaat ttcagctaga tcatgactta ccaataaagt
     1381 acttatttta aaatactcta aaatcttggt taattcatct tgtaaattgg cacgcatttt
     1441 aaaatccaaa gcactcaaag gttcatctaa aagcaagatt tttggttctc ttgctaaagc
     1501 tcttgctaaa gctactcttt gtgcctgccc cccacttaaa tgtttaggat aaattttagc
     1561 taaattttca agcttcatta aggctaaaag ctcgctaacc tttgctttag aactagcggc
     1621 ataggcgatg ttttctttta tattcatatt tggaaaaagc gcataatctt gaaaaacaaa
     1681 accaattttt cttttttgta aagctaaact aaaatttttt gaagaatcaa accaaagttc
     1741 attatctact tctatacgcc ccaatttagg ctttataagt cccgctatga tttttaaaag
     1801 agtggttttt cctgctccac tttcgccaaa aagtgcagta atttttcctg attctatatc
     1861 ttttttaaaa tttaaatcca gtcttccttt agcggtattc ataggatgat tgatatcaat
     1921 tcttatcat
//
