LOCUS       DARBBO010000001        40713 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.001, whole genome shotgun sequence.
ACCESSION   DARBBO010000001 DARBBO010000000
VERSION     DARBBO010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 40713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40713
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.001"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            123..1991
                     /gene="rpoD"
                     /locus_tag="SB854_000001"
     CDS             123..1991
                     /gene="rpoD"
                     /locus_tag="SB854_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEG0956055.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTTKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(2007..2519)
                     /locus_tag="SB854_000002"
     CDS             complement(2007..2519)
                     /locus_tag="SB854_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEG0956056.1"
                     /translation="MKKIYIIRHAKASKSEDIDDFERKLTKSGKEDLKKLFKNLASHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNRICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPSLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(2516..3034)
                     /locus_tag="SB854_000003"
     CDS             complement(2516..3034)
                     /locus_tag="SB854_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEG0956057.1"
                     /translation="MLTIFLIFLNILCYFLISYDYYNILGLNILFFNGAYWQLLSSMF
                     LHGNLTHLILNMIVLFQFGRMLETYLGALCFIFIYFIGGLLCSLLSVFYVYFDFKYFG
                     ENINVIGASGAICVLIGFYAVIDKNSTKGLIVAILLMSFVPLLMGVNVAWYGHIFGFM
                     CGYILAKIKEVK"
     gene            3133..3549
                     /locus_tag="SB854_000004"
     CDS             3133..3549
                     /locus_tag="SB854_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG0956058.1"
                     /translation="MKIKFLNIITILSLSLNADIIISADNLPNVSKEFLQHNFKAPIG
                     IVQKDKNSYEVYLSDGTELEFDIDGAWKEIENKAFPFDLDFLPQNLANIIKNEFPNTK
                     AREIERKINHYKIKLDNDIKILIDFNGTILYKEFDD"
     gene            complement(3558..5174)
                     /locus_tag="SB854_000005"
     CDS             complement(3558..5174)
                     /locus_tag="SB854_000005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HEG0956059.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYVIIKDGIDIKTLLSKVPVEVKKDNTLWVFFILLVFIIAL
                     FISLGYFARKKELTKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNINLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNNEEKKIQATYQAAKALSAYYFDIGFEKITLIEDRFKEYEHNIRSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKESNLSEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEYDDVKDIMQV"
     gene            complement(5178..6428)
                     /gene="mtaB"
                     /locus_tag="SB854_000006"
     CDS             complement(5178..6428)
                     /gene="mtaB"
                     /locus_tag="SB854_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HEG0956060.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTSLGKLLQKMGQILGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSDKD
                     IAKEWIVISEYEVQEKSNFANLKG"
     gene            complement(6425..7996)
                     /locus_tag="SB854_000007"
     CDS             complement(6425..7996)
                     /locus_tag="SB854_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel"
                     /protein_id="HEG0956061.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLNLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLVIIGAFSHIKKLKGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVELKPSVENIEALKASDKKLEEFEQALNFASVSYSVYEKKIDEELSRVSAEIKVQ
                     SLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRIKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIAYPSQNLYLGNLNQNHF
                     EQHHENMYFHARNKD"
     gene            complement(7993..9048)
                     /locus_tag="SB854_000008"
     CDS             complement(7993..9048)
                     /locus_tag="SB854_000008"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEG0956062.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESFFLK
                     TLSSRELAAGMAEFIKMAAMFDDSILDFIEKIDEKSFLNATCENEIFTQIIAKSIELK
                     SRVVEQDEKESRLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGL
                     LDKMQSQRIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGLI
                     KGDISKEDIIATLREFQ"
     gene            complement(9094..10494)
                     /locus_tag="SB854_000009"
     CDS             complement(9094..10494)
                     /locus_tag="SB854_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HEG0956063.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISTWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFGRNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            10524..11645
                     /gene="tgt"
                     /locus_tag="SB854_000010"
     CDS             10524..11645
                     /gene="tgt"
                     /locus_tag="SB854_000010"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEG0956064.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAITYHKNMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEVIDPTCSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            11647..12414
                     /locus_tag="SB854_000011"
     CDS             11647..12414
                     /locus_tag="SB854_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEG0956065.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQNEEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILNKNTKEHLTR
                     IDTLYTLTSAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLY
                     IFSLICCILIVGFIFYHSKKTKEFDLDEGKKAKKQTK"
     gene            12467..12543
                     /locus_tag="SB854_000012"
     tRNA            12467..12543
                     /locus_tag="SB854_000012"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:12501..12503,aa:Arg,seq:gcg)
     gene            complement(12546..12995)
                     /locus_tag="SB854_000013"
     CDS             complement(12546..12995)
                     /locus_tag="SB854_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956066.1"
                     /translation="MVIFCAALALLLFLGVIAYLITSDGKKTIKKQKTSQKQHVAEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEAAKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(13011..16256)
                     /gene="ccsA"
                     /locus_tag="SB854_000014"
     CDS             complement(13011..16256)
                     /gene="ccsA"
                     /locus_tag="SB854_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HEG0956067.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWVMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEINDISFV
                     VKAASFHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNENKNLELTGSNALKLELSYKNESKEFYIFEYNKPIMIELADQKFFISWALSY
                     EQLPFDIYLRDFVLDRYPGSMSPASYASEITVKNNNENFDYRIFMNNVLDYDGYRFYQ
                     SSYDQDEKGTVLSVNKDPGKIPTYIGYFLLCLGMFMNFLNPHSRFRTLARLINKDTLK
                     HTSVIIFILLLSFGSEKTFAQDLNSTLPVVNTNHAKALATLIVQKSADGRMVPFDTLS
                     REILEKIHQSDSYKGQNSNAVMLSMLVDVDKWQMEPFILMPQNQAVRDAIANILEIPS
                     AKYISYKDFFDENNRYKLQKYVENANRKNPNARGVFDKEIIKLDERANVVNLVFSGEL
                     FKFIPVQNNPNNVWLAPFSAVTTLKGDEGHIVLALIQNYFSAVENAFKDGNWTRADEG
                     LKFIKEYQEKIGYKVMPSKTKVEMEIFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVV
                     PNLKISFIFKVVYVLNVLAFVIHTVGLGLRAYLSGHAPWSNGYESMVYIAWALSLSGI
                     FFSRKSPIALSLTSILSGVVLMVAHLSEMNPQITNLVPVLNSYWLSIHVSVITASYGF
                     LGLCALLGIFTLFLMCFLKKDGKYNLNILRNITEATRINEMAMIFGLCLLTVGNFLGA
                     IWANESWGRYWSWDSKETWALVSILVYAAILHLRMIPKYCNQFVFALWSMFAYWVIIM
                     TYFGVNYFLTGLHSYAAGEAAQIPNYVYWGFALMVVLAFFARRKRNFVGKL"
     gene            complement(16274..16969)
                     /locus_tag="SB854_000015"
     CDS             complement(16274..16969)
                     /locus_tag="SB854_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0956068.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            complement(16956..17726)
                     /locus_tag="SB854_000016"
     CDS             complement(16956..17726)
                     /locus_tag="SB854_000016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0956069.1"
                     /translation="MILELKQISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKATSLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            complement(17723..18775)
                     /locus_tag="SB854_000017"
     CDS             complement(17723..18775)
                     /locus_tag="SB854_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG0956070.1"
                     /translation="MMVKIKVSHLIFLIASIIFIFISPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLSLDIQSTPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSEK"
     gene            complement(18775..19671)
                     /locus_tag="SB854_000018"
     CDS             complement(18775..19671)
                     /locus_tag="SB854_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HEG0956071.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFIGALSLAMFFAACVGIAIDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            complement(19690..20799)
                     /locus_tag="SB854_000019"
     CDS             complement(19690..20799)
                     /locus_tag="SB854_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG0956072.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSALSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNAARSVVVKEIKNQKQNYKDIINP"
     gene            complement(20821..21936)
                     /locus_tag="SB854_000020"
     CDS             complement(20821..21936)
                     /locus_tag="SB854_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG0956073.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYNNPSTQ
                     LGKDFVVAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVDNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQNQKQNYKTIINP"
     gene            complement(21967..22401)
                     /locus_tag="SB854_000021"
     CDS             complement(21967..22401)
                     /locus_tag="SB854_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG0956074.1"
                     /translation="MIARWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            complement(22410..22601)
                     /locus_tag="SB854_000022"
     CDS             complement(22410..22601)
                     /locus_tag="SB854_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HEG0956075.1"
                     /translation="MKKIFLIGMILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKK
                     YNKKTHRYQNKTQTEITIK"
     gene            complement(22654..23160)
                     /locus_tag="SB854_000023"
     CDS             complement(22654..23160)
                     /locus_tag="SB854_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HEG0956076.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            complement(23169..24200)
                     /locus_tag="SB854_000024"
     CDS             complement(23169..24200)
                     /locus_tag="SB854_000024"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEG0956077.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFEPQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMINETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILKKAPSVI
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            complement(24200..25501)
                     /gene="flgR"
                     /locus_tag="SB854_000025"
     CDS             complement(24200..25501)
                     /gene="flgR"
                     /locus_tag="SB854_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HEG0956078.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDEN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTADKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFVAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPINIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDK"
     gene            complement(25558..26007)
                     /gene="flgQ"
                     /locus_tag="SB854_000026"
     CDS             complement(25558..26007)
                     /gene="flgQ"
                     /locus_tag="SB854_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HEG0956079.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLGLIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTDLLRAQSETYVKILPLRFTVEFGEQSAIIYYLKKK"
     gene            complement(25983..26498)
                     /gene="flgP"
                     /locus_tag="SB854_000027"
     CDS             complement(25983..26498)
                     /gene="flgP"
                     /locus_tag="SB854_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HEG0956080.1"
                     /translation="MKKNYFMLAIAGILAGCVPSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDQNFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            complement(26567..29155)
                     /gene="gyrA"
                     /locus_tag="SB854_000028"
     CDS             complement(26567..29155)
                     /gene="gyrA"
                     /locus_tag="SB854_000028"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HEG0956081.1"
                     /translation="MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDIAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDNKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLSLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDL"
     gene            complement(29196..29771)
                     /locus_tag="SB854_000029"
     CDS             complement(29196..29771)
                     /locus_tag="SB854_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEG0956082.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNHIKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            complement(29768..30412)
                     /locus_tag="SB854_000030"
     CDS             complement(29768..30412)
                     /locus_tag="SB854_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956083.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEGQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            complement(30489..32285)
                     /gene="lepA"
                     /locus_tag="SB854_000031"
     CDS             complement(30489..32285)
                     /gene="lepA"
                     /locus_tag="SB854_000031"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEG0956084.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGEFIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            32411..33685
                     /gene="cmeD"
                     /locus_tag="SB854_000032"
     CDS             32411..33685
                     /gene="cmeD"
                     /locus_tag="SB854_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HEG0956085.1"
                     /translation="MFEKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLYKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESREKLSLLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFERL
                     QKFYDAGLSPKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINIAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEVKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
     gene            33682..34422
                     /gene="cmeE"
                     /locus_tag="SB854_000033"
     CDS             33682..34422
                     /gene="cmeE"
                     /locus_tag="SB854_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HEG0956086.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYKNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKINLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            34425..37442
                     /gene="cmeF"
                     /locus_tag="SB854_000034"
     CDS             34425..37442
                     /gene="cmeF"
                     /locus_tag="SB854_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HEG0956087.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKLQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNQLRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQSAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKGAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(37466..38272)
                     /locus_tag="SB854_000035"
     CDS             complement(37466..38272)
                     /locus_tag="SB854_000035"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG0956088.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(38273..38992)
                     /locus_tag="SB854_000036"
     CDS             complement(38273..38992)
                     /locus_tag="SB854_000036"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HEG0956089.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCPKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            complement(38992..39243)
                     /locus_tag="SB854_000037"
     CDS             complement(38992..39243)
                     /locus_tag="SB854_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956090.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            complement(39247..40692)
                     /locus_tag="SB854_000038"
     CDS             complement(39247..40692)
                     /locus_tag="SB854_000038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HEG0956091.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
BASE COUNT        14454 a         7176 c         5094 g        13989 t
ORIGIN      
        1 taacagagct ttagaaaaat ttgaaaaaat attcaaatca taaacataat aaccgattta
       61 tatagaaagt taagcaattt ttagataaaa tccaaagctt atataaattt caaggataat
      121 caatgaacgc caaaactcaa gaagctgaat tagaagaatt atttcaagaa aatgcaaaag
      181 attatatcac atatgaaaaa ttggtaaaat atcttacaaa acaaccaagt gcatcaacca
      241 ctaaaaaagt gcaagcatta atgaaaaaac acaaagtgca acttttttca gcagctgaaa
      301 ttgcacaaat gaaaaacata gaagatgcaa aaagacttca agaagaaaaa caaaaactcc
      361 aagatacaag ccttgagaac gaatttgatt tagccaatga aaacgattta ttagaatgga
      421 gcagatcaga ctctcctgtt cgtatgtatt taagagaaat gggacaaatt gctttattaa
      481 acaaagatga agaaattgaa atttccaaaa aaatagaact tggcgaagat attatcattg
      541 atgctttttg ttctgtacct tatttgatag attttatttt agattataaa gaacctttaa
      601 taaacagaga aagaagggta aaagaactat ttaaaagctt tgacgatgaa gaaaaaagtg
      661 atgataaact tgatgaactt gatatagatg aagatgaaga aaacgaaaca gaattagaat
      721 cagatgaaga aaatactaaa aaaaacagca aaaaagaaga tgaaagaact ttaaaagtta
      781 tagaaaaatt taaagctcta gaaaaagcta aaaaagattg gctaaaaaca tccaaagaca
      841 aagaaagcgg agatgaactt ttagataaat taagcattgc gttcaaaaaa aatattttaa
      901 aagaaaaatt aatggatcta ggccctactt caaaacttat tagcgaaatc gtaaaatcaa
      961 tggaaactgc actaaaaagt gatgaagaat ttgacaaaga acttaagcgt ttagaatacc
     1021 gcttacctat gttttctgat gaacttaaaa aacgccatgc agatatttta aaagatatta
     1081 caaaattgag caaagaagaa atcacagagc gagctttaga aacaaccatg gtaagcactt
     1141 atatggaaat taaaaaacta tttcaaacta aagaagccag tgaaaaaagc tttgatcttg
     1201 aaaaatcacg cttaaaagaa attttggagc aaattaaacg cggtaaaaaa atctctgatg
     1261 aagcaaaagg aagaatggca aaatcaaact tgcgccttgt tgtaagcata gctaaacgct
     1321 acacaaatcg tggtctgcct ttcttagacc ttatccaaga aggaaatata ggtttgatga
     1381 aagctgtgga taaatttgaa tacaaaaggg gttataaatt ttccacttat gcaacttggt
     1441 ggatcaggca agctatttca agggctatag ctgatcaagc aagaaccata agaattccaa
     1501 tccatatgat agaaaccatc aatcaaatta acaaaattat ccgcgaacat ctacaaaaag
     1561 atggaaaaga acctgatgtc agtgttatag ctaaagaagt aggtttaagc gtagataagg
     1621 ttaaacaagt tattaaaatc acaaaagaac caatttctct tgaagctcca ataggaaatg
     1681 aagatgatgg taaatttgga gattttgttg aagatagaaa ttcactttct ccaatggatc
     1741 atatcttaaa ggatgattta aaagaacaaa ttgatgaagt tttagatcaa ttaaacgata
     1801 gagaaaaagc ggtaattcgt atgcgttttg gtttaatgga tgatgaaagt gatagaactt
     1861 tagaggaaat tggaaaggaa cttaatgtca ctcgagaaag agtgagacaa atagaaagct
     1921 cagctataaa aaaactcaaa caccctaaag taggaagaaa actaaaaaat tatatagaag
     1981 gttggaagta agagtcaatc tccttactaa aaacccagat ctttttcttc ttttaacttg
     2041 cgtacatgtt caaaaaaaac taattttccg ctatgttttt ttaaattttt aaattcctta
     2101 atatcaaatt ctaaacacaa gatagaagaa gttggaaaag aagctaaaca tagcgaactt
     2161 aataactctc caagctccat taaactagga ttatgaccca ctaaaaatac ttcattaaac
     2221 tcatcatcaa tatcttgcag aatttttagc aaattttcaa cattgcaaag atacaatctt
     2281 tcatcaaaac aaattctatt tttatcaaaa ttataaaatt tggctatttt tttcgctgtt
     2341 ttagcggttc taacagcagg actcgatagc accaaatcag gatgaatttc atgcgaagca
     2401 agatttttaa aaagtttttt taaatcttcc tttccactct tagtaagttt tctttcaaaa
     2461 tcatcgatgt cttcactctt acttgctttt gcatgtctta taatataaat ttttttcatt
     2521 ttacctcttt tattttagct aaaatataac cacacataaa cccgaaaata tgaccatacc
     2581 aagcaacatt tactcccata agcaatggca caaaactcat aagtaaaatt gccactataa
     2641 gtccttttgt gctattttta tcaataacag cataaaagcc tattaaaaca caaattgcac
     2701 cactagcgcc tatgacattt atattttctc caaaatattt aaaatcaaaa tacacataaa
     2761 aaacacttaa aagtgagcac aacaatccgc caataaaata aataaaaata aaacacaaag
     2821 cacccaaata agtttctaac atacgcccaa attgaaacaa aactatcata tttaatataa
     2881 gatgagttaa atttccatgt aaaaacattg aacttaaaag ctgccaataa gctccattaa
     2941 aaaataaaat attcaaacca aggatattgt aataatcata agaaatcaaa aaataacata
     3001 aaatatttaa aaaaattaaa aaaattgtaa gcaaaatata aaacctttat tttttataat
     3061 attgtcttaa aattcacata aaattcacat aaattcttta caattttact aaaaaataat
     3121 ttaggaaaaa tattgaaaat taaattttta aatattatta ctattttaag tttatcttta
     3181 aatgctgata taataatttc tgctgataat ttaccaaatg tttctaaaga atttttacaa
     3241 cataatttca aagcgcctat agggatcgtg caaaaagaca aaaattccta tgaagtctat
     3301 cttagcgatg gaacagagct tgaatttgat atagatggag cttggaagga aattgaaaat
     3361 aaagcctttc cttttgatct agatttttta cctcaaaatt tagccaatat catcaaaaac
     3421 gaatttccaa atacaaaagc tagagaaatt gaaagaaaaa tcaaccatta taagattaaa
     3481 cttgataacg atataaaaat tcttatagat tttaatggaa ctatcttata taaagaattt
     3541 gatgattaaa catatcatca aacctgcatt atatctttaa catcgtcata ttctatcttt
     3601 tctttttcaa gcaaaagctc tgataatttt aaaattttat ccttcataga atttaaaaat
     3661 tcatccattt cttttttttg ttcacttaaa tttgactctt tcaacatatc aaaactcaac
     3721 atataatcaa gcaattcttt aatctttaaa aaatcatctt gcgagttagt ataactttca
     3781 ttgtaaatca atctcatggc tctagaacca gccaaataaa cttttatacg attgataagc
     3841 tctgattttg atcttatatt atgctcatat tctttaaaac gatcttcaat gagagtgatt
     3901 ttttcaaatc ctatgtcaaa ataatacgca ctcaaagctt ttgcagcttg ataagtggct
     3961 tgaattttct tctcttcatt attaaaactt aaaatctttt tcttacctaa aagaacttta
     4021 tttaatacag cataaaaatc gctttcctca actaaagcac tatttcttct taaagcatta
     4081 attgctgctt cattgaccaa agtttcaagc cctgctccac taaaacctac gcttgcttta
     4141 gcgattttat ttaaattgat attattgttt ttatctttca tataaatttc taaaatttta
     4201 agtctatcct taaaatcagg caaagataaa aaaattctcc tatcaaaacg ccccgaacgc
     4261 aataaagcag gatccataag ttcgatttta tttgtcgcag ctataactat aaccccgcta
     4321 ttgtcctcaa aaccatccat ttgagttaaa agttgattta aagtgctatc tctttcaaca
     4381 tttgacattt ctcctcttgc cttacctacg gcatctattt catcaataaa aactatgcta
     4441 ggcgccatca ttttagcttt tgaaaaaagc tctctaactc tttttgcacc catacctaca
     4501 taaatttcaa caaaacttga accactttga taaaaaaatg gcacccctgc ttctcctgca
     4561 actgcttttg ctatcaatgt ttttcctaca ccaggtgggc ctaccattaa aacacctttt
     4621 ggcattttta caccaaattc tttatatttt ttaggatttt gtaaaaaatc cacaagttcg
     4681 cttagctcca ttttaacttc atcaacacct gctacatcat taaaagtaat atttgaaatc
     4741 acaggtttta tatgagaact ttctaaattt atatttgaat tttgagcttg agtgtgattt
     4801 tgattcttat ttgatattgg atatttagtt aactcttttt tacgagcaaa atagccaaga
     4861 cttataaaaa gtgcgataat aaaaacaagt aaaataaaaa acacccaaag cgtattatct
     4921 tttttaacct ctacgggaac ttttgataaa agtgttttta tatctatgcc atcttttata
     4981 attacgtaat tttcaccttc tgccttaagc caaatttcgt ctttatcaat cacagctttt
     5041 tggattaaat tttggcttaa tagactttga taaagatttt catctatata tttaggttca
     5101 tttttaaaat ataaaattcc caaaagcata cataaaacca taaaagatgc taaaattatc
     5161 tttttatttt tcattatcta gccttttaaa tttgcaaagt tagacttttc ttgtacttca
     5221 tattcagata taacgatcca ttctttagct atatctttat cacttttaat tttaatctta
     5281 ttaaaaaact gatcataacc ctcaaaaaaa ccatcttttt gattttctac caaaacttca
     5341 agtgaaactt gatttttttt cctaaattca taattatttt tttctactat ggattttaaa
     5401 gtgtttagcc tttctttagc taaagttcca tttatcacat ctttcatggt agcagaatgc
     5461 gtgttgtttc tagggctaaa aataaaagca tggatatgag tgagtggaaa ttctttaaaa
     5521 tttcttaaag cttcttgcca tagctcttca ctctcgcctg gatgagctac tataaaatcc
     5581 gtccctaaag catatccttt gcttgctata gtattaaaaa gctttaaatc attatccgta
     5641 tgtgatcttc ttctcattat acgaagcatt ttttcacttg tatgttgcaa tgcaatatgt
     5701 aaatgccttt caagccaagc ttcatctaag atttctaaaa aactttcatc aagctgtgca
     5761 ggttctaaac tacctagcct tatgcgtttt atacctaaaa tttgtcccat tttttgcaaa
     5821 agcttgccta aacttgtgcc atttttaagc ccatatgaac ctatattagt ccctgttaaa
     5881 acaatttcac tataaccatt agctcctaaa atttcaacct gttttaaaag agctttttca
     5941 tccacgcttc ttgattttcc cctcacgcta ggaataatac aataagaaca agcaaaatca
     6001 caaccttctt gaattttcac aaaagctttg gtatgatttt catactcaca aactatatct
     6061 ttatcaataa aatttaaatt tccaagttca taaaaacttg tctttgctcc taaaaattca
     6121 ttgattttat ctttatttga cgctccaagc actccaaaaa cttgcttttt atctaaaagc
     6181 tccttacctt tgcttacagc accacaacct gtaagtataa ctttaatgcc ttttttttgc
     6241 atggtattta cataagactt tatcccgcta tcagctccat ttgtaaccgt gcaagaattt
     6301 acaacgataa tttgtgcttt attctcatca tttataatct cataatcttt tacataactt
     6361 tttaaaagct ctgtatcata aatatttgtg cgacacccaa aggttttaaa aaaaactttt
     6421 tctttcaatc tttattcctt gcatgaaaat acatattttc atgatgttgt tcaaaatgat
     6481 tttgatttaa atttcctaaa tataaatttt gcgatggata agcaattttt atatctttat
     6541 gcttattaaa ttcttttata atctctttgc taatcgtact tcttaatact aaagccgcat
     6601 aagcattagt catataccat gcagaaattc tcattcccca atgttcaaaa aacataaaaa
     6661 accttggctc cactttagga tttttaatac tatattcatg ttgtaaacga gctatatttt
     6721 ttctagcaag ctcagtataa cctttggcat ggcgtgtaac aatattttcc acaatttctt
     6781 gagctttgtc aagattgcta tcaaaagtaa cacttatatc aatgccatca agcacggttt
     6841 tcataccatg atgagtataa ttagcaagca aatttgtaaa aacatagtta ttaggaataa
     6901 atataatacg cccactacga cgatttttat tataagtttc aagcgtaagc tcttcataaa
     6961 gagtaatgcg taaaaaagaa atgtctataa tatctcctat ataggtagta tcattttgaa
     7021 aaacctttat acgatcccct actctaaaac ttccgccaaa aataatcaca caccatccaa
     7081 gcatagacat aaacatatct ttcatagcaa tagctaagcc tgcagaggca aaaccaagta
     7141 tagttacaag ataagtaata ttttctatat aagcaaagag caaaataaga aaaataatat
     7201 ttatattaat aaaattaata atcttcgtag cagtataata tctttcacta tccttaatgt
     7261 actttttagc aataaatttc aacataaaag ctatagctat aacaataaca atagcaacaa
     7321 gtatatttac agcccttaag ctttgaactt taatctcagc acttactcga gaaagctctt
     7381 catcaatttt tttctcataa acagaataag aaacactagc aaaatttaaa gcttgctcaa
     7441 attcttccag ctttttatcc gaagctttta aagcttctat attctcaaca cttggtttaa
     7501 gctcaactaa ttccttaagt tctgagtttt tttccctgat tttatctact aaatttttaa
     7561 aatcattaaa tttaaatata tactcttcct tttctccttt taatttctta atatgagaaa
     7621 aagctcctat aataaccaaa ggattagtaa gcttagataa agtttctata ttatcagggg
     7681 cactaagact ttgtgcaaaa tttaaatctt tatattcttt aagcaagttc aattgctctt
     7741 ctaaatttgc tatcttgcgt ttaagttctt cttgttggtg aatatcggaa gtctttttta
     7801 aattaagatt taaaatgatt aattcatcat ttatatcttg atattttata aaattttcat
     7861 aacgtatatt ccaaatacta gcactgatta cagtatttaa agtattaatt ttctcattta
     7921 tattattaat aatagtccga tttacatcac caaaagcaaa aacaacaaaa aaggttaaaa
     7981 taataatttt tttcattgga attctcttaa agttgcaatt atatcttctt tagaaatatc
     8041 accttttatc aaacccttac ccaaaggact agcaagaaca aaattgattt ttttattaga
     8101 gcttttttta tccatgaaaa aagcttcata aaattcatct acattgttga ttttatatga
     8161 tattggcaaa ccgaatttaa gtaaaatatc ttttattctt tgactttgca ttttatccaa
     8221 aagccctaaa tttaaagcca attgatttgc cataaccata cctatagcca ccgcttctcc
     8281 gtgtaaataa agcttataat ctgtaaaatt ttctataaca tgagcaaaag tatgaccata
     8341 atttaaaagc attctaagcc ttgattcttt ttcatcttgt tcaacaaccc ttgatttaag
     8401 ctctatgctt tttgctataa tctgagtaaa aatttcattc tcacaagtag catttaagaa
     8461 acttttttca tcaatttttt ctataaaatc aagtatacta tcatcaaaca ttgctgccat
     8521 tttaataaat tcagccatgc ctgcagcaag ttctctagag ctcaaagtct ttaaaaaaaa
     8581 actctcacaa tatacagctt taggttgata aaaagtgcca ataagatttt taccaaaatt
     8641 attattaaca cctgtttttc cacctactgc tgcatcaaca caagctaaaa gtgtagtagg
     8701 aatatttata aaatcaatac ctctttgata aatactagca gcaaatccgc ccatatcact
     8761 aatcacgcca ccaccaaaac ttataagtac gctttttcta tccaatttag aattaaacat
     8821 ttggtttaaa atttcttcca tggtgcttaa atttttatat tcttcaccat ctttcacagt
     8881 ggcaataaaa atttcttttg ccttaatttt agaaagtaat gttttcaaat gaagacctga
     8941 aatcttagga tttgaaagta taaaaacctt actatcaaat tctaattctt caagttcatc
     9001 aatataaacc ttataagcat tttcttttaa cttaacttct acttgcattg aactactctt
     9061 tttgcattta ttttatcaca tttaattaat tatttattct actggtatga aaagttggta
     9121 attttgtctc attttataat aatgcctatt taaatttgta cttaaatttc tgccaaaatc
     9181 tctatttagt aattcttttt gaaaactcac aaattgtaac aaatcttcgc gatattgcaa
     9241 atttaaaaga gggttttcat catttttatt aataatttgt atatttttat cataaagctt
     9301 agataaactt ctaaaatact cctccatatc tgtagtattt tgagaatttg gattataata
     9361 atataaaata actccaaaat caagctgttt acttaaatca gtaatgacat ttgcattgtt
     9421 ttcaagttca ctctcatcgg cacttaaaat aatcgcttct ttaagctcat caaaagaagc
     9481 ttcacccacc ttcataatag gaatttttaa atcaaaaaaa gcttgttttt ctttctcaaa
     9541 attttttata tcggttacaa ctaatcctat atcattattt tgcaaccatg tggaaatttg
     9601 tttaaaatcc gtgttgaaat aatcaaaaaa cacaccttct ttatcctcag aaagtttttt
     9661 taatttttca tacattaccc ctaatttagg attgataaca tgtataaaaa atctttttgc
     9721 attgcttttt tgagttaatt ttaaagtagt atcaagcact ctttcttgca tattttgatt
     9781 catatttttc atatcaatta aagcaaaaac attacttcca aaaggcatag gaaattgccc
     9841 tgctttgcct cttatattat gaaaaatact ttgtaaaaca acaggatccc caacgatcaa
     9901 aatgctatca tttggctcta gaacaaaaga tggttttaca aaataaattt tagaatttct
     9961 ataaataagg actatgcgcc accttttttg ttgtattgaa cttatgtgcc tataagcaaa
    10021 aatagaccct gctggaattt ttacttccat aatctctcca actccaagtc ctatatactg
    10081 agctgttaaa gcaatatctg gtaaaaaatc cataaatcta cggcttaaag tcattctagc
    10141 atcagctaaa tttgcatgag tatcattaac acttaatccc caaaaatcca ttatttctat
    10201 ttctaaattt ggatttaaag aacgcaaagc ctcataactt tttttagttt caaattcatc
    10261 ttgcatataa ataaaagcct gtttaaaatc cttgctcata atattttcaa gacgcgctgt
    10321 gcttgtagga tcaaaataat gcaagtcaat atactcacta gaaatattta agttattttt
    10381 ttcactattt tgacacacta ctgtaaaaaa gtaacctaag cctttttcaa aacaaagcct
    10441 ttctaagaaa tgctttgcta aaataccatc tattataatt aaaatattat tcattttaaa
    10501 ctccaaaaag gaaattataa caaatggaat ttaaattaaa gcataaagat ggaatggcaa
    10561 gggtttgtga aatcactacc gcacacagca cttttttaac ccctgttttt atgcctgttg
    10621 gcacagtagg agcggttaaa agtcttgatg ctaatgatat gaaaaatgag cttgatgcaa
    10681 aaattatttt agcaaatacc tatcacatgt acttgcgtcc aacttccaaa gtagtaaaag
    10741 attttggagg tttacatgga tttacgaaat ttgatagaag ttttttaacc gatagtggtg
    10801 gttttcaagc tttttcttta agtaaaaatt ccaaacattt taatgaaggc atagaattta
    10861 aaagtcacat tgatggaagt cgtcatcttt ttactccaaa aagtgtttta gatactcaat
    10921 atgattttaa ttctgatatt atgatgattt tagatgattt agtagcccta cccgcaacca
    10981 aagaaagggt taaaatttct gttgatcgca ctatactttg ggcaaaagag gctattactt
    11041 atcataaaaa tatgcaaaat aaaggtatag gtatagggca aaatattttt ggtattatcc
    11101 aaggtggtac agattatgaa gaaagaaagc gttgcgcttt aagtttaaat gaaatgccat
    11161 ttgatggttt agctataggt gggcttagcg tgggcgaaga aaacgccttg atgtacgaaa
    11221 cagtccaaaa cttaaaccct tatctagacg aaaatcgtcc aagatattta atgggcgtag
    11281 gaacgcctga agatttagta gaaaatgttg agcgaggggt agatatgttt gactgcgtga
    11341 tgccaactag aaatgcaaga aatggaacat tttttacaag ttttggaaaa tttaatatta
    11401 aaaaagcaga atttatcaac gatcatgaag ttatagatcc tacttgctca tgttatactt
    11461 gtcgtaattt ttcaaggggt tatttaaacc atctttttaa agctaaagaa cttacttttt
    11521 ttcgtttggc aagtctgcac aatctacatt attatcttga acttgcaaga aagatgcgtg
    11581 aagcaatttt gaacaattct tttacgcaat ttaaaagaaa tttttatcac ttaagaggca
    11641 aataaaatgc tagagctaca cgaaaatcta aaaaaaatcc tgcaagcaaa gaatttagaa
    11701 actttctata gcgaaattta tggacaaaaa atttttgttt acgtgggatt aaatttagaa
    11761 acttggcttt ttaatgatga aaaaatttat aaacttcaaa atgaagaatt taagctttct
    11821 agcatagaag aattttcaaa ttttattaaa tctattttag aagattttaa agtacaaaat
    11881 actcattttc aaaacctttt agaacacaaa gaaggtatta tcttaaaagg tggttttgtt
    11941 aaaaattttt acaaaaaatc ctttgtttta agacaaaaaa ttaacaaaaa tctaaagcaa
    12001 attaatcttc taagtgaagc tttcaatctt ttgcttagcg aacaagcaca atacaaaaaa
    12061 catttaaaaa ttctaaattt atccatcagc atcttaaata aaaataccaa agaacatcta
    12121 acaagaattg atactcttta tacattaaca agtgcaatta aaaatgaaaa aatgaataaa
    12181 agtatttatc ttttaagcat actttcttct attttcttac ctttaaattt gatcgtagga
    12241 ttttttggaa tgaatactaa taatcttttt ttcaaagata gcccttatgg tacactttat
    12301 attttttctt tgatttgctg tattttgatt gtaggtttta tattttatca ttcaaaaaag
    12361 actaaagaat ttgatttaga tgaaggtaaa aaagctaaaa aacaaacaaa ataagcaaaa
    12421 ttttgcttat tttaagaata tttatatata attttaactt atttttgcgc tcatagctca
    12481 gctggataga gcatttgatt gcggttcaaa aggccagagg ttcgaatcct cttgagcgca
    12541 ccatattatt tatcttcttt aatttttctt ttagctaatc ccatatgctc gtaagcatca
    12601 atttcttttt tgtaagatcc agaaattttc ttaagttctt tatttaagta acttactgtt
    12661 tgtgcacttg cattaatatt tgcagccaaa gcagaaacaa attctagttt cttttttgct
    12721 gcttcatcta attctttaga agtttttgaa ccaagtttat gtgtctgcac ataaagtttg
    12781 gcaagttctt ttaattcaat atccgttagt ttaacatcgg aagcagcaat tatcatttta
    12841 tctaagtctg tatcaaattt tttagtcttt tcagctacat gctgcttttg gctagttttt
    12901 tgctttttaa ttgttttttt gccatcactt gtaataagat aagcaatcac gcctaaaaac
    12961 aataaaagcg ctaaagcagc acaaaaaata accaaaaaaa tatggttcat ttaaagtttg
    13021 cccacaaaat ttcgcttcct tcttgcaaaa aaagctaaaa ccaccatcaa tgcaaatccc
    13081 caataaacgt aattaggaat ttgagccgct tcgcctgcgg cgtaagaatg aagtcctgtt
    13141 aaaaagtaat ttactccaaa ataagtcata ataataaccc aataagcaaa catactccat
    13201 aaagcaaaca caaattgatt acaatatttt ggaatcattc taagatgcaa aattgctgca
    13261 taaaccaaaa tgctaactaa agcccaagtt tccttagaat cccaactcca atatctcccc
    13321 caactttcat ttgcccaaat tgcacctaaa aaatttccta cagtaagtaa acaaagtcca
    13381 aaaatcattg ccatttcatt aattcttgta gcctctgtaa tatttctcaa aatattaaga
    13441 ttatattttc catctttctt aagaaaacac attaagaaca gtgtaaagat accaagtaag
    13501 gcacaaagtc ctaaaaatcc ataactagca gtaataacag atacatgaat actaagccaa
    13561 taagaattga gcacaggaac aagatttgta atttgcggat tcatttcgct taaatgtgca
    13621 accattaata caacaccgga taaaatagaa gttaatgaca aggctatagg actttttcta
    13681 gagaaaaata tacccgacaa agacaatgcc caagctatat acaccatact ttcatagcca
    13741 ttactccacg gagcatgacc tgataaataa gcacgaagtc caagacctac tgtatgaatt
    13801 acaaaagcta aaacatttaa aacatatacc actttaaata taaaagagat ttttaaattc
    13861 ggtacgacca ttttagaaaa aacaagaatc aaaagtaaaa aacccgcaat taaatataca
    13921 ggagcgagtt taacgaaaat ttcagcctta ttagaaaaaa tttccatttc aaccttggtt
    13981 ttactaggca tgactttata tcctattttt tcttgatatt ctttgataaa tttcaagcct
    14041 tcatcagctc tagtccaatt accatcttta aaagcatttt ccacggcact aaaataattc
    14101 tgtattaaag ccaaaacaat atgcccttca tcccccttaa gagtagttac agcagaaaaa
    14161 ggtgcaagcc aaacattatt tggattattt tgaacaggaa taaatttaaa taattcacca
    14221 ctaaaaacta aatttacaac attagctctt tcatctagtt ttataatttc cttatcaaaa
    14281 actcctcttg catttgggtt tttacgattt gcattttcaa catatttttg aagtttatat
    14341 cggttattct catcaaagaa atctttataa gaaatatatt tagcactagg aatttctaaa
    14401 atatttgcaa tagcatcacg aactgcttga ttttgtggca ttaaaataaa aggttccatt
    14461 tgccatttat ctacatcaac gagcatggaa agcataacag cgttagaatt ttgaccctta
    14521 tagctatcac tttgatgaat tttttctaaa atttctcttg atagcgtatc aaaaggcacc
    14581 attcttccat ctgctgattt ttgaactatt aaagtggcaa gagctttagc atgattagta
    14641 tttaccacag gtaaggtcga atttaaatct tgagcaaaag tcttttcaga accaaaagat
    14701 aacaataaaa taaaaataat cacacttgta tgttttaaag tgtctttatt aattaatctt
    14761 gccaaagttc taaatctaga atgtggattt aaaaaattca taaacattcc aagacaaagc
    14821 agaaaataac ctatataagt tggtattttg cccggatctt tatttacaga taaaacagtc
    14881 cctttttcat cttgatcata agaactttga taaaatctat agccatcata atctaaaaca
    14941 ttattcataa aaattctata atcaaaattt tcattattat tttttacggt aatttcactt
    15001 gcataagaag ctggagacat agaacctgga taacgatcta atacaaaatc tcttaaataa
    15061 atatcaaaag gcaattgttc ataagaaagc gcccaagaaa taaagaattt ttgatctgca
    15121 agttctatca taataggttt attatattca aaaatataaa attctttact ttcattttta
    15181 tagcttaatt ctaattttaa agcattagag ccagttaatt ctaagttttt attctcattg
    15241 cttaaggcaa aatctttaaa atgcaataat aaagaatttt tccaattttg aggctcgcca
    15301 aaagtagaaa tcaacatagt tctacccact tctaaccaag cagatttaaa ccataaccaa
    15361 aaactttcat cttgaggtct attggaacct tctaaagctt cttgcgcatg gaaagaagca
    15421 gctttaacta caaaactaat atcattaatt tcataaagtc ttctttcctt agcatttgcc
    15481 ttttctccaa ttttaaggtc taaattttgt ccatctagca tacttagaaa atgtaagttt
    15541 tcacttgaac ttaaagttaa attttcatca atttttacaa aaggtgcttt aacattatca
    15601 ttcataaaag caaagttaac cccttctata ttcttaactt cacctttttc aaatttaaca
    15661 tcaacacctt gagaaccttt ttgagaaagc atcaaaacca ataaaggatc agaattatta
    15721 ttttctttat aagtataatg agcatttaag attaaatctt tatattttaa tacagcttga
    15781 tcatcaccta aattaagttt tagtttaaaa gaattagcaa aaggcaaatt tcctatataa
    15841 cgatcattaa ccgcactata gcgttctcca tcttttatag cagaaatacg caaagaagtc
    15901 ttagaacttt ctataagtga attttgagta tgctctctaa taggtaaaat accttcaaaa
    15961 ccagcatatc ttgtcattgc agaacccact aaaataaata aaaaagaaat atgaaaaatc
    16021 attaaaggta attttttaag cccaaacatt ttataacgaa acatcccgca tagtaaatta
    16081 ataccaagta aaagttgtat atattcaaac caaaaagtat cataaaccat tacccaagcc
    16141 gtaggagttc cataagcact ttcaataaaa gttgccaaag cacaaaaaag cgcaaaaagc
    16201 aaaaacaata caaccgaaac tcttaaatcc cctatgcttt ttattatatt tttcattctt
    16261 tttcctttaa attttaaagc cctaaatatt tctttctaat ctcatcatca cctattaaat
    16321 ttttagcctc gttttccatt acaatgcgac cattttccaa aacataagca taatcactta
    16381 tttttaatgc agaataagca ttttgctcta ccaaaagaat agttataccc tcttctttta
    16441 aacgcacaat aatatcaaaa acttcaccca caatctttgg agcaagtccc aaagaaggct
    16501 catccaacat caaaagtttt ggttcactca ttaaagccct tgaaatcgca agcatttgcg
    16561 cttcccctcc actcaatgtt ccagctaaag catgcttttt acttgcaagt cttggaaaaa
    16621 gtttatacat ttgctctctt aaatgctcat aattttcagc attattaaaa gcacctattt
    16681 ttaaattttc ctctacgctt aaattaataa aaacacgcct tccttcagga actaaagcta
    16741 tacctttttg aactaaagta tgagttaaat gccttttagt atcataacct aagaaattaa
    16801 cctcaccagt tcttttaact gagtttaaaa gcgcatttaa agttgaagtt ttacctgctc
    16861 catttgaacc tataagagaa acaatatgac ctgtttccac tttaaaatca atccctttaa
    16921 cagcttcaat taatccataa taaacatgca aatctttaac tattagcatc aaaatcccct
    16981 aaatacgcag caattacttc tttatgattt acagcatcgc aaagtttacc ttcaaaaatt
    17041 gtttttccat aatcaagtac caatacgcga tcacacaatt tatttacaaa tttcatatca
    17101 tgctctataa gcaaaacgct aattttataa tcttttcgta atttaaaaat gagctcagca
    17161 agttcatcac tctcagagct attcatccca gcggctggct catcaagcaa taataatctt
    17221 ggttgagtag ccattgctct tgcaatctca acttttcttt gttgtccata actcaagcta
    17281 gtagcctttt cataggcaaa ttctgcaata ccaagttctt ctaatattgc ataagccttc
    17341 tctttaaata cttgttctat ttttccaaaa cgccctaaat gcaaaaaggc ttcaaaaata
    17401 ttatatttca tttgtttatt aaaaccaata agaacatttt caagcacatt catgcttgaa
    17461 aaaagcctaa tattttgaaa tgttctagct attcctaaat gcacaatctt atgaggtttt
    17521 aagtgatcaa ttctttctcc tagaaattca accgaacctg aactaggttt atagttacct
    17581 gttataatat taaaaagagt tgttttacca gccccattag gtccaattaa agcaaaaatt
    17641 tcaccctcat tgattttaaa agaagtttca ttaatagcct taacactacc aaaacttttt
    17701 gaaatttgtt ttaattccaa aatcattttt cactcctttt aaaacgcttt ttaatccctc
    17761 taatcacatc actcaactcg taataaccca ttatgccttt tcttgcaaaa agcattacta
    17821 aaatcagaac aatagaaaaa acaaccattc taagccctgg tgttgattgg atatcaagac
    17881 ttaaagaatc tatttttata tttaactcat ctaaaaatct aagccactcg cttccaccaa
    17941 taaccaatat cgcacctata atagcacctg tagtagaacc aagtccaccc aaaacaataa
    18001 taatcaaaag ttgaaaagta agtaaaaaat caaattgagt tggagatacg gtagtcaaca
    18061 gacaagccaa aagtccgcca cctacacctt ctaaaaatgc tgaagtgcta aaagctaaag
    18121 tttttatcca aaaagtattt attcccatag cgcttgcagc atcttcatca tctcttatag
    18181 ccttcattgc acgaccatat ttagaataaa ctatatttaa aattaaaata accgctacaa
    18241 tagcaatacc acctgtccaa tagatcgtgg aaaattgtgg aatatctacc agtcctcttg
    18301 agccattagt aatagaagga aaattaatag cagctatttt aataattatt ccaaagccta
    18361 aagttacaat agccaaataa tcccctctca cgcgaaatac agcaaaagcc aaaatcaggg
    18421 caagtaaaga tgaacaaatt ccagccacaa ttaaagctag aataaaggaa tttgaatgga
    18481 tggctaaaat aaaagaacta ggaccatcta aaaaaaactg atcatttttc gcatcagcac
    18541 tcaaaagaac taaagcagcc gcataagctc caatcgcaac aaatccattg ggttctagtg
    18601 aaaattgtcc agttacacca ttaataaggt tgtaactcac agccaaaata ataaaaatag
    18661 caatttgatt aacaatgttt aatccatagt ccccaaaaat ataaggagaa atgaaaataa
    18721 aaataattga agcaattaaa aagattaaat gtgaaacctt aattttaacc atcattaaaa
    18781 cctactcttt tcaaaattta tacctaaaat tcccgtaggc ctaaataaca atataaacac
    18841 caaaaaaata aaagcaaatg catctttaaa gcctgataaa tctggaaaaa aagccacaac
    18901 aacaacttca gtaaatccta taataagtcc acccaaaact gcacctacta cagaacctat
    18961 acctcctaaa actgcagcag caaaagcttt caaacctatt aaagttccca tagtaggttc
    19021 aacagagtaa taatttgcag cccaaaaaac acccccaact gctgccaaag ctgaacctag
    19081 ggcaaaaact atagcaataa tacgatttgc atctataccc attaaattta ctgtttgtat
    19141 atcaaatgcc aaagcacgaa tagctatacc atatttgctt ttatacaaaa tccataacac
    19201 tgctattaaa ataacaaatg taagagcagg aaccattaaa gaaccataag ttgttatcac
    19261 tccgccaaaa ttaacacttt cctcaaaata acttggcggt gtaaaagttc taggtgttga
    19321 agtaaaaagc atattaaaaa gattttgcaa gaaaaaacta ataccaattg ctgtaatcaa
    19381 caatgaaatt ctaggagcct gtcttaaagg tttataagcg attctatcta tagctattcc
    19441 aacacaagca gcaaaaaaca ttgccaaaga caaagctcct ataaaaggaa catttagatt
    19501 agtcatgcaa aaaagagctg cataagcacc aaccatcata atatcgccgt gagcaaaatt
    19561 aataagtctt aacacaccat aaaccatcgt atagccaaca gcaataagag catacatact
    19621 gcccaaacta agtccattaa caagttgttg taaaaataaa gtagaatcca taatctttct
    19681 atttttcctt taaggattga taatatcttt ataattttgc ttttgatttt taatttcttt
    19741 aaccactaca gaacgagctg catttcctgt ttgatcaatg ctaataacac cagaaacacc
    19801 ttggtaattt ttagtttggt gaattttttc attgacacac ttactagtaa gattttcaac
    19861 gcaagcattc atagcattta gcattacaaa atacgcatca gcacccatag ctgaaaaatt
    19921 tggaacttct tttgttcctt tagctttttc ataaacactg ataaattctt tgcttaattt
    19981 tgtagttgga ttattagcat caaaactatc tgtgaaaata taaccctcgc ttgcatctcc
    20041 agctaaacta ataaaagttt gatcagcaac tccatctgca gaacccatag gaatatttaa
    20101 acctgcgagt tttgattgtc ttgcaaataa agaagcttcg ctataataaa gcggtaaaaa
    20161 aataaattct ggatttaaac ttttaacttg agctacaata gctctaaaat ctttatcacc
    20221 tgaattaact cttaaaattc taagaatttg accaccatta gacttgtact gtttttcaaa
    20281 agcttttgct aaacctaagg aatagtcagt gctttgatct actacaataa cagcactttt
    20341 gtaattaagt tttgaaaaaa catattttgc taaagatgaa ccttgaaaac tgtccataaa
    20401 acatactcga gaagaatata tttttttatc aagcaatcta tcaccagttg cagcaggagc
    20461 gatcaatgga attttattat cttctgctac gcgcataact tgcaatgtat tagcagtaac
    20521 catttcccct ataaggccta taactttatc ttgagaaact aaacgatttg ctccactcga
    20581 agattctaat ttatcacctt tagtatcaat aatagcaaga gaaaccttat ctccattact
    20641 taaagctgat tgcattgaat ttgcaagttt aatcccttct agtgcgcttt gtccatatgc
    20701 tgcagtagct ccgctaagcg gtaaaacaac tcctattttg acttccgcag cacttaaact
    20761 taaacttaga atacttgcta aaattaaact ttttttcatt ctctaccttt attttagtaa
    20821 ttatggattt ataattgttt tataattttg tttttgattt tgaatttctt taatcacaac
    20881 agaacgaatg gcattaccgc tttcatctat gctaatcaca ccaccaacag cttgaaaatc
    20941 tttagtttga tgaattttgc tattaataca ttcgctgcta agattatcaa cgcaagcatt
    21001 catagcattc aacattacaa aatacgcatc agcccccata gccgaaaatg ctggaagttc
    21061 ttttgttcct ttaactttct cataagctac aacaaaatct tttcctaatt gtgtagatgg
    21121 attgttataa tcaaaactat cagtgaaaat tactccatta acagcacttc cgccaagatc
    21181 tataaaagtt tgattgttaa caccgtctcc tgctgctaaa agtttatcaa aaccaatttg
    21241 tcttgcttgt ctcgcaatta aagcagcttc aggatgataa ataggcatat aaacaaaatc
    21301 aggatttaaa ctcttaagtt gagaaaccac agctctaaaa tctttatctc ctgaattaat
    21361 aacaagtttt tttataattt tcccaccatt attcttaaaa gaattttcaa aagctcttgc
    21421 caaacctaaa gaataaacat tgctttgatc tatgatgata acagcatttt taagtcctaa
    21481 atccttagat acataagtag caaatttatc tccttgaaaa ctatctttaa aacaaactct
    21541 acttgcatat ttctttttat ctagcaattt atctccagat gccactggag ctattagggg
    21601 aatttttttc tcttctgcta tagaaatagc ttgaatggta tttggagttg tagcttcacc
    21661 aataatccca aggactttat ctgttgctat taaacgatta actccatttg aagtttcaag
    21721 cttatctcct tttgtatcta ttgtgataag tttaataaca tctccatttg aaagttttgg
    21781 ctgtagctta ttagccagtt caattccgtt aaaaacatct tgcccataag ctgccacagt
    21841 tccagttaaa ggtaaaacta ctcctatatt aatatcctta gcatataagc aatttaccat
    21901 agttaaaaca cttaaagtta aagttagttt tttcatagta ttccttttaa ttatagtttt
    21961 tacattttat tttagaaata tattatgttt tgttttttgc gcaggttctt cttcaagaag
    22021 atcttttact tgcaaatcaa gcgcaaaatt tccaccttta atataagcaa taatattatc
    22081 tatatcctcg tggcttaaat ttctagcata aaaagccatt tgagaagctg ttgtagaact
    22141 gctactatca agagtataac ctatcaaagc tcctttaata tcctcaggag acatatcttt
    22201 taaaattcta gatcctataa cactcttttc agcattatct ccatggcaag tattgcattt
    22261 attttgaaaa tacaaagcct tcgctttttc catatcatat tgcttatttg catcaaaggt
    22321 ataagtaaaa aatgatttca agttaatacc aaaaagcgca acaacaaata ttgaactaat
    22381 aaacaaccag cgtgcaatca tgattttcct tattttattg taatttctgt ttgtgtttta
    22441 ttttgatatc tatgtgtttt tttgttgtat tttttttctt ttttaatatc atagcgataa
    22501 cgaacagtcc ctgaaacttc tatatcttta aagacttcat ctaacggagc tgcaaaaaca
    22561 aaatgattta aaatcatacc aattaaaaat atttttttca tttttattct ttaaacacaa
    22621 aaaaacgatt atatcaaaaa aagataatcc ttgttaatga ccacctttgt gtaaaaaata
    22681 aagtcctaca caaagagcta aaatcgatcc agcaagaaaa gccatatcca caggagtagc
    22741 aaatttcatc tgtaaaaccc tttgaaagaa atttactact aagaccataa tgataacttt
    22801 tgcaagcttg tcttttaatt gatctaagct atgcacctct aaaaccttgc tttgttttgt
    22861 ttgtttaaat tcttctattt cgctgataaa aagctcataa actccaaaag aaaaaataaa
    22921 caaaactaaa gccataagat aaagatcaac agctcctata attaaagcca ccacatcctc
    22981 atgcaaatcc acattagaac ctgcatcaaa aaaataatta taagtataaa atataacttt
    23041 taaaacatca taacttgcaa taaaaaacaa tacaaaagct ccaattaaac caaaaattac
    23101 gggtaaaatt gtaacaatac gacttctaac aagtaaagat tcaaatattt tctctaacat
    23161 ttttttcctt atttattttt taattctaac catttttgcg caatacgcac agcatttgtt
    23221 gcagcaccta cacgaatttg atccgccaca caccaaagat ggagtatttt tttatcatac
    23281 acatcagcac gaattcttcc tacataagtt tcattagtat cgctagtcat taaaggcata
    23341 gggtattttt tatttttagg atcatctatg acaataacac tcggtgcttt ttttaaaatt
    23401 tctttagctt tttttacatc tatttctttt tcaaaatgca tagtaatggc ttcgctatga
    23461 cttcttaaaa caggcactct aacacaagtt gccgaaactt ctaaattttt atgtaaaatt
    23521 ttttgagttt cattaatcat tttaagttct tctttagtgt aatcattatc cataaaaaca
    23581 tcaatttgtg gaataagatt aagtgccaaa gtataaggaa aagtttgagg ttcaaattca
    23641 tcaagtttaa aagcaaaaaa actttgcata gcttcaacca attcttgcat tccttctttt
    23701 cctgctccac ttgcagcctg ataggtactt acatcaacac gctttaaatt aaatgcatca
    23761 tttaaaggtt ttaaaacttg caccatttgt atagtagaac aatttggatt agcaataatc
    23821 cctgtttttt tccaatcttt aatatcctca ggattgcatt caggaaccac caaaggaaca
    23881 tctttttcca ttctaaaatg acttgtatta tcaataacaa cagcaccaga ttctactgca
    23941 aatttagcat atttttcact cacacttcca cctgcgctaa aaaaagcaat atcaatagga
    24001 ttttctttaa atacattttc ggtaagttct ttgactttat aagctttgcc tttaaattct
    24061 acttcactac ctacactttt tgcacttgct aaaggtaaaa tactttccac tgggaaatca
    24121 agttcatcta aaacatttaa aagctcttcc ccaaccgcac cagtagcacc cacaatggct
    24181 attttttgtt tttttgacat tacttatcct ttatttgata ttttttaatt ttttcattta
    24241 aaatttttat atccatacct aaaatttgag aagcttgatc cttgtcataa tctacactta
    24301 aaagaacttc acaaatcaat tctttttcta aattctttac atcttttttt atacttctag
    24361 cttctaagaa caaatcttca cttgaaattt catcattttc acttaaaata caagctcttt
    24421 gtacaacgga tattaattct ctaatattac caggaaaatc atattcaagt aaagcatttt
    24481 tagcttcttg actgagctgt ttttccttaa aatcatattc tttacaagta tcttctaaaa
    24541 ccttttgagc tatacctaaa atttcttctt tacgctctct taaaggcggg atattaatag
    24601 gaacagtgtt taaacgataa tataaatctg aacgaaattc gccatttttt attttttcat
    24661 ccaaatttgc attagttgca ctgataattc ttacatctat tttgatgctt tttgtacttc
    24721 caagtcgcgt aatttctttt tcttgcaaag ctcttaaaag tttggcttga atttcataag
    24781 gcatttcgcc aatttcatct aaaaataaag tgccctcatt agccatttca aaaagcccta
    24841 ttttagttgc attagcatca gtaaaagcac ctttttcaaa accaaaaagc tcactttcaa
    24901 ttaaatttgc aggaatggct gccatattaa tagcaacaaa aggcttatta gagcgtttag
    24961 aatgagtgtg aatataacga gaaaatacct cttttcctac tccactctct ccaaaaaaca
    25021 ttacagaggc atcagtttta gccgcttttt gacttaaatt taatgttttt tctaaattag
    25081 gagaagttga aaaaaaatct ttattttctt cttttttttc attttttttg ctttttttat
    25141 cggctgtttt ttctcttatg attttagcac gcttaatagc ctcgactaaa gtatcaacat
    25201 caaaaggctt ggttaaaaaa tcttttactc ccaaacgaac cgcttctata gcacggctta
    25261 aagtagcatt tcctgtcata ataataaaat catatttatt ttcacaggct ttaacaaatt
    25321 ctataccatc aattcctggc atattaatat ctgtaataat caaatctgta ttctcatcta
    25381 ttttttttaa agcttcagta gcagatttat aagatttaat attaaattct tcatactctg
    25441 ctaatgcaat ttctaaggat ttgcgcatat taatatcatc ttctactatg actaaattca
    25501 tcctaagcct tttaaaaaat ttctactata gtatccaatt tgcgcttaat tttgaattta
    25561 ctttttttta agataataaa ttatcgcact ttgttcgcca aattccacgg taaaacgcaa
    25621 gggtaaaatt ttaacataag tttcactttg agcacgtaat aagtcagtat taacaatatc
    25681 cttaacactg attctagccc ctataaagca atcgcttaac tcatctttat gagaattcaa
    25741 aaaattaaat ttaattgttt ttggcatatt atcatcaatc aatcctaaag aagttcgagg
    25801 taaaactttt aaatcttgat cactataaga aatttcacat acccattgtt cttcaacatt
    25861 ttcgctttgc gtcattgcta aggataaatt ttgattttga tgaaagagaa tgaaattttt
    25921 actagaaagc tctgcccaaa aaataaattc atcttgggca aaaagcttaa agctaagaaa
    25981 gattaataag caaacaattc tttccacttg tctgcatcga ttttaagttc taagtttacc
    26041 ctataaagcc cttgattaaa attctgatca ataatacttg cattttttat caaaccattt
    26101 acttgcgcag taatagttga acttctaagc attgcatctt ttacagtatc tttaccattc
    26161 actttcacac cataaagctt acttgcaagc tgtctgtaag catctgtaat cgctgctctt
    26221 tttgctaaag ctagggcttg agcagtagaa actgtattca tcggagcaat cccttcacca
    26281 actgctgtaa aactaagttc cgtttcgcta gcatctggag ccaacatttt ttcttctctg
    26341 ataatatcac gcacatcatc tttatcgact ttttgcacga taacatcttg agatggggca
    26401 gtgctatttg cacttgaatt tttagttgca ctgtttgcac ttggtacaca accagcgaga
    26461 attcctgcta ttgctagcat aaaataattt tttttcattt ttacaccttc aaaatattgt
    26521 aattagtaaa aaataaaaag caataagcgt tccaacttta aacttattac aaatctaaac
    26581 caaagttttc atcgcttaac tcatcctcat cattttcctc tttaggacac ttagcgatgc
    26641 taaccacctc gtcattttcc acattaacta caatgacacc actcgtatta cgccctgctt
    26701 ttctaatgct ttgcatatca acacgtatca tcttacctga acttgtaaga gccatcaaat
    26761 ccatagtttc atctactata actacgctaa taagatcttt ggttttttct gtaagtttca
    26821 tacaaattac acccttacca cctctgcttt gtaatctata ttctccagca tttgtgcgtt
    26881 ttcctatacc ttttgcactt atgcttaaaa tttcttgctc atcattttct ataacaactg
    26941 cacctactaa ttcgtcattt ttctctttaa acttaatagc cgtcacccca cgacttacac
    27001 ggccgatttc acgcacttta gcaagtggga atttgataca catacctttt ttggttactg
    27061 caaagagcat tttaccttgt gtgcttacac tttcttcatt ttcaagattt tcatcatcta
    27121 aattttcaat ttcttgattt tctaaatttt cttcaccacc agtggcaaaa atttcatctt
    27181 catctctttg aacaataata gcagttacca actcatcatt ttcatccaag ttgatcgctc
    27241 taactcctac acttctgata ttttgatatt cactcaaatt tgtacgcttt acaataccat
    27301 ttttagtaaa gaaacataaa gatttactct catcaaaatc cgtggttgga ataatagcca
    27361 tgattttttc ttcagcttgt aaattaataa gatttaccac tgcttttcct ttagccgttc
    27421 ttgagccttc aggaatttta taaactttaa gccaataaag ctgtccacga tctgttacaa
    27481 acataagtgt atcatgtgta tttgccgtaa agaaactttc tataaaatca tcatcataag
    27541 tcgtaacggc taattttcct tttccgcctc gtttttgctt ttcatattgt ttactaggca
    27601 cacgcttaat ataaccacga tgcgtaatag ttacaaccat attttcatta ggaatcaaat
    27661 cttcaatatc aatatcatca taatcatctt caatttgagt aatacgtggc acatcaaatt
    27721 tacttctaat ttcttttaat tcatcgcgaa ttaaattttc aagcaaggtt tcacttttta
    27781 aaatttcttc aagtcttgca atttctttca ttaattctgc aagttcattt tcgatttttt
    27841 ctctttcaag tcctgttaaa cgaccaagtt tcatatctaa aatagcattg gcttgaagct
    27901 cactaagacc aaatttagct accaaagaat ctcttgcggt attattatca gaactatttt
    27961 taattaaagc aatcacttca tctatattat caagtgcaat tttaagacct tctaaaatat
    28021 gagctcttgc tcttgccttt tgaagttcaa aaatcgttct tctaataata actgtttttc
    28081 tatgggttaa gaaaagactt aaaagttcta acaaagagaa aattttaggt tctttattgt
    28141 gaattgccaa cataatcaca ccaaaagtac tttccatagt ggtagattta aatagattat
    28201 ttaaaacaat ttcactcata gcctcacgtt taagctctat aacaacgcgg attccttctt
    28261 tattactctc atctcttact tcagatattc cttcaatttg cttttcttta acaagctctg
    28321 caatctgctc tataagccta gctttattgg tttgataagg aagctcatct ataacaataa
    28381 catctttatt tgtctttttt tcaatatgag ttttagctcg cactttcaca cgaccacgcc
    28441 ctgtgcgata agcttctata atgccttttt taccataaat tattccacct gttggaaaat
    28501 ctggaccttt gataaactgc ataatctctt ctaggcttgc atctttatta tcaagcaaat
    28561 ataaaagtcc atctatcaac tcatttaaac tatgaggtgg gatgtttgtc gccataccta
    28621 cagctatacc acttgaacca tttaataata aatttggaac cctagaaggt aaaacatcag
    28681 gttcgctttc tgaaccatca taatttggaa caaaatcgac cgtatcttta tctatatctt
    28741 ttaaaagctc atgagaaagt ttactcattt ttgcttcagt ataacgcatc gcagcggcac
    28801 tatcaccatc tatagatcca aagttgcctt gtcctgtaat acttggatat ctcatagaaa
    28861 aatcttgagc cattctaacc aaagcatcat aaactgctat atctccatgt gggtgataac
    28921 gacctataac agcacccact atacgggctg atttgacaaa atctgttcta ctttttgcct
    28981 catcattttg catagcatat aaaattcttc tatgaacagg ctttaaacca tctcttgcgt
    29041 caggcaaagc acgacctata ataacactca tagaatagtc taaataacta ctttttatag
    29101 aattttctat atctacaagt tcaatatcag aatctttgct aaaaatattc tccataaaaa
    29161 tccttctatt agttcaaagt tttgattata gcatattaaa cttttgcatc agctaaaaca
    29221 agagcaaaaa gtacagaaat tttattttct tctaaaactt ttttagcttc caaaaggcta
    29281 gaaccagtcg ttacaatatc atctactaaa attacaggtt cgtgaatggt ttttaagagt
    29341 ttgtaatttc ttttatgttt ttgacgaaat tctaaacttt ttccagaata tttaatatga
    29401 ttttgtgctt ttaaaacatt aaaaacaggt tttacaaatt ttgttttaag atatctagct
    29461 aaaatagcag aatgcgaata aagcatatct tcaaccttat catctaaagc tataacatta
    29521 attgtcattc taggatcaaa aaaatcttta aattttgcaa aacttaattt agcaagcatt
    29581 ttataaacaa aataaccata aaaataatgt ttagagtgaa gcaagtgttg tatttcatgg
    29641 tatttataaa aagaatagac tttgaaatta ttatcaagct ttcttacatt taaggaaaat
    29701 tcagaaagct ctagctcgca taattcacaa aagcagagca gagcaaaagc tccgcaattt
    29761 atacacctca aagttcagag attaaactag ctgctttatt tgccatttgt tttattaaca
    29821 aatgagtata aaaagttgtt tcttttaaat catcaaaacc ttgtacatct tgcttggtgc
    29881 ggattgtaaa tttcttattt ttatttatat cactaacttg taaaactcct actagttttg
    29941 aatgtaatcc tatagcatct tgagttgccc cataagatat aaattctaaa tcaatcttac
    30001 tcacataagg tgaattttga tcgttattgt caagcacaac tattcctcta gcttcaagtt
    30061 cttgttttaa ataagtataa aataccgcat taaaattcac atcaacaaat aactttttcc
    30121 ctttagcatt taaaaccttt tgcccttctt ttaaatcata aaatctatgt aaataaacct
    30181 ttttcaaagc aataccagtg tctaaagtgc gtttattggc acaacattga attccaacat
    30241 cgctaatgta taaaagccct ttaatctttg cttcaaaacc accaggactt tcacaagaac
    30301 tgcattgaga atttttagaa atttgattaa cttgagcaaa agtatcttgt ttagttgcac
    30361 aagcactcaa aaataaaata ggcactataa aaatcaaaaa ttttttaaac attttttctc
    30421 cttagaaaat tattttaaaa ttgtattaaa aatacaagca aatttcaagc caagttttaa
    30481 atttatcatc aatctatctt taaaacactc aaaaaagcct cttgaggtaa atttacctta
    30541 cctatagctt tcattctttt tttaccttct ttttgctttt ctaaaagctt tctttttcta
    30601 gtaatatccc caccataaca ttttgctgtc acatttttac ccatggattt aacagtttct
    30661 cttgcgatga ttttatttcc aatacttgct tgaatggcca cttcaaaaag ctgtctagga
    30721 actatttctt tcatagcact aacaagttct cttcctttac tttgcgcttt ttcattaggc
    30781 acgataatgc ttagcgcatc aacattttca cccgctacct taatatcaag ttttaccaaa
    30841 tcccctactc taaattctat aggctcataa tcaaaactcg cataaccttt tgttaaggac
    30901 tttaatttat cataaaaatc catcacaatc tcatttaaag gcacatcata ttctagcaaa
    30961 acacgctcag gtgtgatata gtccatttta acctgtactc ctcttttgcg atttaaaaga
    31021 gtgattaaat tccctaaaaa ttcacttgga gtaatgatag tagctttaac ataaggctct
    31081 tttatatgat cgattttatt aacaggagga agctcgctag gattttgaat tttaataaac
    31141 tctccatcgg tttgataaat ttcataagtc acagttggag ctgtagcaat caaatcaaga
    31201 ttaaattctc tctcaagcct ttctttgata acttccatat gtaaaagccc taaaaatcct
    31261 accctaaaac caaagcctaa ggccaaagaa gtttcaggct cataagtaat agaactatca
    31321 ttaagcttta atttatccaa agcatctctt aaatcttcaa atttatccgt ttctatagga
    31381 taaagtcccg caaatacaaa agctttagcc ttttcaaaac cacctatggc ttctttagct
    31441 ttgtttttta ccaaagtgat ggtatcgcct acttgtacat cacctacggt tttaagccct
    31501 aaaaccacca cacctacttc gcctgattgt aaagattgag ttttaattgg acttaaaggg
    31561 tggggataaa aaagatcttg aactatatgt tttttatccg tactcatgac taaaacttca
    31621 tcgtttttag caatacttcc ttcataaatc ctaaccaaag ccaaagcacc caaataatta
    31681 tcaaaccaag aatcataaat taaagcctta gtaggagctt catcatctgt ttttggtgca
    31741 gggattttag taataattgt ttctataagc tcttttatac ccactcctgt ttttgcactc
    31801 acacaaattg catctttgca atctatacct ataatatgct cgatttcatg ctttactttc
    31861 tcaacatcag cattaggtaa atcgatttta ttaatcacag gaatgatttc aagattattt
    31921 tcaagcgcta tataaacatt agctatagtc tgtgcttcaa caccttgaga agcatctact
    31981 acaagcaaag ctccttcaca acttgccaaa gaacgactca cttcataaga aaaatccaca
    32041 tggccaggag tatcaataag atttaaaaca aaattttcat tattaaattt ataatttaaa
    32101 cgcactgatt gtgcttttat ggtgatacca cgctcttttt ctatatccat agtatccata
    32161 acttgtgaac tcatctgcct atcgctaata gcaccacact cactaataat cctatctgca
    32221 agagtagatt ttccatgatc tatatgagct ataatagaaa aatttctaat attttttacc
    32281 gacaaaattt catcctaaat ataaaatttt aaagctagga ttttaacaaa atttatgttt
    32341 aaaacaaata aatttttttt atataaaaaa cttcaattga aatttatata aaacatatta
    32401 aaatatcaaa atgtttgaaa aatatttaaa atcagctata tttttagctc tttatccctt
    32461 agcaatgtta gcttctaatt tgcacgaatt tatagcacta agtcaaaata atgaatccta
    32521 tctcattaag caaatgcaaa gcgaacaagc aaatttatac aaagaacaag cttttagaaa
    32581 ttacctaccc tctcttagtc taaactcagc ttatgtagcc aacaataaag atcgcttcat
    32641 tatcgatcca caagaaagtt tatttgctaa agtttctctt aattttttgc tttttgatgg
    32701 gggtgctaga gaggctaatt taagagcttt agaaagcaga gaaaaattaa gccttttaga
    32761 caaagaacaa aataaaaatt accttgccct aaatgcaatc acactttatt ttaacacctt
    32821 aagtcttgaa aaaattttac tagccaatca acaaaaagta tcttttttaa aatcaacttt
    32881 tgaaagattg caaaaatttt acgacgcagg acttagccct aaagatgaac ttgaaagcat
    32941 taaggctaaa taccatttaa gcttattaga gctcagtcaa aatgaattaa aacttgccaa
    33001 tatacaaaaa gagattaaaa ttttaagcga tacagatttt aaagtgcaag gaaatgcttt
    33061 tttagaaaat ccgcaacaag aaaaaagtca aaactatgaa gtaatgatag ctaaagaaca
    33121 aatcaatatt gctaaagaaa gtgtaaattt agcaaaagct gaatattttc caaaatttta
    33181 tattcaagat aattttaact tttataaaaa caattataat ccaaaagttc cagctccttt
    33241 tgcaaattta gcggatcaat tcttagaaaa atattctcaa ggtaatcaat ttattttagg
    33301 tatggaatgg aaaatttttg atttcaatgc aagggctaaa gaagttgaaa aagagcgttt
    33361 aaatgttcaa atagccaatg caaatgcaag atttagcgag agaaaaaata aagaagaatt
    33421 aaattattta gacaaaagtt taaaagtttt acaagaacaa attttagctc ttaatcttag
    33481 cttaaatgct gcaaatttag cttttgaaag tgtagataaa aaataccaag caggacttgt
    33541 ttcttatgta gaatatcttc aagctttaga ggttaaattt aaagcacaaa gcgatttaga
    33601 gcttgctaaa aatgaatttg aaattactaa agcaaattat tattttaatg cgggtataga
    33661 tcttaattca aaggttaaag aatgaaaaaa attctatttt tacttcttgt ttttaattgc
    33721 gcctttggcg aagaaattta cgcaagtttc aatgtagaag catcaaaaca aagcaaactt
    33781 gcccttgaaa gcataggttt ggttcaaaaa attcctgtag aaattggaca aaaagtcagc
    33841 aaaggagaac ttttacttgc tcttgatcaa gaaagtgaaa aaatagctct tcaaaatgct
    33901 caaaattctt atcaacttgc ccttgtagaa tacgaaaata ccaaaagtag gatgcaaaaa
    33961 atcaaagctg tagaaaatgt tatagacaaa caaagctatg aagatatgaa agctaagttt
    34021 gatgctgcta atttaaattt aaacaaagca aaaatcaata tagcttatta taaaaatatc
    34081 atggcaaaaa aagaattacg cgcaccttat gatgctatta tcgcaaacaa atttatacaa
    34141 gtgggcgaag gagtaggagg agtagctcaa cctttaatag aaattttttc ctatccacaa
    34201 agcaaactga ttttaagttt tgatgaaaaa tataaagata aagttagatt aggcgatgat
    34261 ttcttttata aaatcgatca aaatggtaca gaattgaaag gaaaaatcaa ccttatttat
    34321 ccaagtatag aagtaaaaac aagaaaaatt tatgctgaag tgcaaaccac aaatctaaca
    34381 ccagggcttt ttggtgaagg tagaatcatc actaaagatt aaaaatgttt aaactagcta
    34441 taaaccgacc tattaccgtg ctaatgtttt tcttagctct tatgattttt gggctaatct
    34501 ctgcttttag catgagtgta aatttatttc ctaatgtttc catacctctt ataaaaatca
    34561 caagcaagat aaatggggat ttaaatttcg tagaatcaaa agtcactaaa gaaatagaaa
    34621 atgctttaag tgaaatcgat ggagtaaaga ccataacctc agctgcatat gataatttta
    34681 gtgtaagtgt agtcgagttt aaactgggta aaaatcttga agtagctgcc aatgatgtgc
    34741 gtgataaaat aggaacttta agcctacctt ctaagcctga aattgaaaaa atcagttcag
    34801 attctggttc tgctatttca ctttttctat attctaaaga taaattacaa ctcatgcgtg
    34861 aaatcaatga caaaataaaa ccttttttgc aaagagttga aggagtaggt aaaatcgaag
    34921 ctaaggggtt tttagaaccc caaattcgca tagaattaaa accaaaccaa cttagaaaat
    34981 acaatcttaa cgcccttgat gtagcaaata tcatcaaaag tcaaaatttt aaacaagccc
    35041 taggcgaact taacaacaat caagataact atatcatcaa aggctatttt gaagccacaa
    35101 atttagaaga acttagcaat cttcgcataa aaacaggagt atttttaagt gatattgcta
    35161 atatttcaag cctttatgaa gatgaaaaac aaagtgcttt atacgaaggt aaagaagggg
    35221 tgcttttaga actcggaaaa atcacaaatt ataacaccct tgaaatgatt aaaaatgtca
    35281 aaaatgcctt gcctatttta gaaaaacaaa ttccaaaaga tataagcatt aatatgcttt
    35341 atgataaaag cttaaatatc cacaagcacc tttctcaagt gatttttgat atggttttgg
    35401 ggatttttct aacccttgtt atcgtgtttt tatttttaag aaatttaagt gcaactctca
    35461 ttgcttgcat agctatacct acttctatca tttcaacttt ttttattatt gatcttttag
    35521 gctatgattt aaaccgctta acttttatag ctttaacctt aagcatagga atttttatcg
    35581 atgatgctat agtagtgatt gaaaatattg ctaaaaaact aaaaacttat ccgcctttac
    35641 aagctgcttt tttgggtatc aatgaaatag gttttagcgt tttaagcata agtatagttt
    35701 tactttgtgt ttttatccct atttcttata tgaactctat atcagggctt tttttcaatg
    35761 ccttaggcat aagcgttgca agtgggatag ttataagctt tttggtttct gtatttttaa
    35821 tacctagtat tggggcaaga tttttaaatc caaaagaaaa caagttttat gaaaaaacag
    35881 aagctttttt tgaaaaaata gagcaaaagt atgaaaattt actctataaa attttacaaa
    35941 ataaagtaaa atttatccta gccactcttg tttttatagg gctttctttt gctttagcca
    36001 ctcgcatagg gcttgatttt ttacctatgg aagatgatag tgaaattcaa gttttgcttg
    36061 aaagcaaaaa ggatttaagt ttagaagcca tgaaagaaaa aagtttaaat ttgcttgaaa
    36121 aaatcaaaaa tgatagcaat gtcaaatacg cttttttact tgtaggctat gatgatgcca
    36181 aagatgctac aaaggctaaa atttatgtta aacttaaaaa tttagacgaa agaaatttaa
    36241 gacaaagtgc catagtaagt ttatatcgtc aaaaatttca agatgaaagt ttaaaaatca
    36301 aaattttaga acttccaaag atagagggtg caggcattga tgatcccgtg caatttttaa
    36361 tcttaggaga tgatttaaac actctaaaag gagctgcttc tcaggcaaaa gaaattttag
    36421 gcactaatgc acgcattgta gatataagtg ataatgctaa tgctacaaaa gatgaagtag
    36481 ccttacacat caacaaagaa aaagccaaac ttttagatgt caatcctcaa tatatcgctg
    36541 gggttttagg gtattctttc tcgcaactta gcgtaggaag catggataga ggcaattcaa
    36601 aagatgatat tatcctaagt tttgctccag aatttaaaaa agacatagaa gctttaaagc
    36661 gcattagcat taaaaacaac caaggtataa atttagaact ttcaagcgtg gtggatttta
    36721 tatacagtaa agatttaaaa actatcaatc gttacaataa aaaccgctct gtgaaaatca
    36781 cagctggagt gaatgatctt tccttaggag cggtgcaaaa acttttacta gataatatgg
    36841 ataaaatttt aaataacaat ccaagtctta gctatgcttt ttcaggcttt atcaatcttt
    36901 taggtgaaac cgtgcaaggt tttgctatgg cagtagcact tgcttttgtt ttaatttatc
    36961 ttgttttagc cgcactttat gaaagtttta ttctgccttt aatcatcatg ataaccatgc
    37021 ctttagcctt tggcggagct tctatagggc tttttatcac agggcataat ttttcacttt
    37081 ttgtacttat tgccatcatc ttactttttg gtatggtggg gaaaaatgct attttactcg
    37141 tagatgtagc taataaaaaa tgccatgaag gtttagatcc cgataaagct cttttaatcg
    37201 ctggaaaatc gcgcttaagg gctatattga tgacaacttt tgctatgatt tttgctatgc
    37261 tcccacttgc tctttcaagg ggtgcgggct atgaagctaa ttctcctatg gcaatagcca
    37321 ttatctttgg acttataagt tcgactttgc ttaccttact cgtagtacct gcacttttta
    37381 aattttgttt taaactagat agcaaattaa gaaaaattta tgagagagaa aaattaaatt
    37441 aaccaaaatg attaatttaa tttttttaag tattattctt ataaagtgct tttaagttat
    37501 cataggcgat ttgtattttt tcaaactgtt ctcttgcgta agctttttct attgcacttt
    37561 ttccttgatg aaaatcagga tgataaagtt ttaccaaaat caaatatttt tgtctgattt
    37621 cactaagatc attttgcgga gtgcattcta aagtattaaa ataattacta aaaagcttag
    37681 ctaaagcatt aaatttccat ttcatatttt ctttattgtg aatattttgg cgaaattttt
    37741 tatactcttc gcggtcaact tcaaaattca cgcaatattt taaatgctcg ctctcatctg
    37801 caaaagcttc aaaaagttca agggtattct cgtttttata ttctaaaatt agaatatttg
    37861 tcatttcatt atattctata ttatgatctt gaaaataatt tcttatataa gtaataaata
    37921 atttttcatt agagcttaac ttcatcaaaa ttctacccgc aacaaaatca atcttgataa
    37981 acaacatagg cttaagcata ttattttgct caaaaattaa tctaaaagtt ttaaaatgag
    38041 catcttgtaa attctctata ccttcatttg tgcttttacg atatttttga tctaaaactt
    38101 ttaagaaata acggcgctgt ggaatttcat tttcttcaaa aaaagaaaaa attttatttt
    38161 ttcgtcctat gacctttgtg aaatttttgg taatcaagtc tttaaaatac tgaaatacgc
    38221 taatatcatc tgtattaaca ttgatagttt ctaaagtttg cacgatttgc atctatttct
    38281 cccataaaac ctcattttca aaaagctctt tagtgccttt taaaatttca ttgggtgtat
    38341 aatcggcttt ataagataaa gattgacact tttttacaaa atacccaaga taaatataat
    38401 ctaagttcat ttttttagct atttgtattt cattgagcaa agaaaattta cccaaagaaa
    38461 aatacgaaaa atcaggatca taaaaacaat aaatgcttga aattccatcc tctaaaatat
    38521 caatcaaatc aacacaaacg agcttatctt ctatataaaa tgcaagctca tatccaaaat
    38581 tcataaaacc atcgacataa agattataat actgtttaaa gcttaaatca taacgcttcc
    38641 agttcttttt ttcttccata aaacgatggt atttatcata taaaaacaaa tgttcattgc
    38701 ttaaattggg cgttctaagt ataactttgg tattaatatt tttatttaca acccttcttt
    38761 cacttcttga aaaattatat tcattaacta aaattctaag acttaaacat tcatcacaat
    38821 ctttacaaat agggcgtgaa aaatacctac caaaacgacg ccaacctcgt tttattagct
    38881 cattattgat ttctttaggg caattttcaa tgtatttata ctctattctt gaacgtttat
    38941 cctttaagta aggacactga tcttcaagag tacaaaaacc aatctcaagc attaaatttt
    39001 cttaatatct gtatttttga taaattcgga aaattcatcc tgtagttttt cttgctttaa
    39061 gaaaatttct tgcatttcct tatctatgtt tgtttcttga tttttttcgc gaatatcttt
    39121 agctagtttt tctaaatttt ttacacttgc accactcttg cttgatttct tcgctaattt
    39181 tgaagtattg gtgttagctt gcatttcttt tttaatactt ttaagactgt ctaaaaaatc
    39241 catctattat tccctacttt ctcgtatttt tttaagcgta gcagctattg cagctataac
    39301 ttcttcttta ttttcttgat gacgatcttc tgttttttct aataattctt gcatatgtgt
    39361 ttctatgaaa gaggtgtcta aataccccct tctaaattct cttgtttttg taatggcaat
    39421 taaaaatggt attgttgttc taatatcatc aatcacaaat tccttcaaag cacgctcaag
    39481 tttattaacc gctaaatcat aacttgttgc tttaataata agctttgcaa gcatggaatc
    39541 ataataaggc ggcacagtat agtctttata aatatgacta tcaaccctaa cagatggtcc
    39601 aagagctggg tagtattctc ctatttttcc aggacttgga ataaaatttt tccatacatt
    39661 ttcagcagta attctagctt caatagcaaa acccctaggt ttaatatcgc tttgttctaa
    39721 gtccaaaatt tctcctgctg caatacgaat ttgtcttaca ataagatcaa tacctgtaat
    39781 ttcttcagta attggatgct caacttgaat tcttgtattc atttccataa aataaaagcg
    39841 attataatca tcaagcaaaa actctatagt tccagcattt gtataaccta cagccttagc
    39901 agctgccaca gctgtaacac ccatggtttt tctaagatta tctgaaattc cagggcaagg
    39961 tgctatctca attacctttt gatgtcttct ttgaatagaa caatcccttt cacaaagatg
    40021 gataatattt ccgtagttat ctcctaaaat ttgaaattct atatgtctgg gattaactac
    40081 atatttttcc ataaatactt catcattatt aaagtatgtt aaagcttctc ttttgcaaga
    40141 ttcaaaggca ttttcaagat cttgttcttt atgaacaacg cgaattccgc gtccacctcc
    40201 accacctgaa gcttttaaaa taacaggata accaatcttc tcagcaaaaa ttttaatttc
    40261 ttccatgcta taggaattta atttttcagt ccctggaaca ataggtatgc catttttagc
    40321 cattaactta cgagcgatat ttttatttcc catcttatgg attacttcag attttggacc
    40381 tataaaaata attccagcat cttcacaagc cttagcaaat tcgtaattct cacttaaaaa
    40441 tccataacca ggatggatcg catcagcacc acaagcctta gcaatctcga caatacgagc
    40501 aacatctaaa tatcctctta tagcatccgt tcctatgcga taagcctcat ctgcgatttt
    40561 tacatgcaaa cattcacgat caggctctgt aaaaactgca acacttttaa tatgtaaatc
    40621 tctacaagca cggattactc taacagctat ttcagctcta tttgctatga gaattttatg
    40681 gatttgattc ataatttgcc ttttttgtta tat
//
LOCUS       DARBBO010000002        37144 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.002, whole genome shotgun sequence.
ACCESSION   DARBBO010000002 DARBBO010000000
VERSION     DARBBO010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 37144)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37144)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37144
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.002"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..73)
                     /locus_tag="SB854_000039"
     CDS             complement(<1..73)
                     /locus_tag="SB854_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2018 domain-containing protein"
                     /protein_id="HEG0956092.1"
                     /translation="MDFFDEMFNKTPKEKFIEIIQNGN"
     gene            complement(212..769)
                     /locus_tag="SB854_000040"
     CDS             complement(212..769)
                     /locus_tag="SB854_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HEG0956093.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKETMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPYS"
     gene            complement(766..1611)
                     /locus_tag="SB854_000041"
     CDS             complement(766..1611)
                     /locus_tag="SB854_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEG0956094.1"
                     /translation="MAFNYDEYLRVDKMPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKAKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(1612..2736)
                     /locus_tag="SB854_000042"
     CDS             complement(1612..2736)
                     /locus_tag="SB854_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HEG0956095.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASIAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIKVYNRKKFEGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGVIVKKNMERLIGKIKNNQEDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAIQRLREQGIKVGLFRPITLYPVAEKKIAEVVSKFKKVMVSELNM
                     GQYLEEIERVTSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(2745..3056)
                     /locus_tag="SB854_000043"
     CDS             complement(2745..3056)
                     /locus_tag="SB854_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEG0956096.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECEIHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(3071..3940)
                     /gene="sucD"
                     /locus_tag="SB854_000044"
     CDS             complement(3071..3940)
                     /gene="sucD"
                     /locus_tag="SB854_000044"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEG0956097.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGITPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(3950..5113)
                     /gene="sucC"
                     /locus_tag="SB854_000045"
     CDS             complement(3950..5113)
                     /gene="sucC"
                     /locus_tag="SB854_000045"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HEG0956098.1"
                     /translation="MNIHEYQAKAIFADNGILTLKGKVAFSVDEAVSNAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITLIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVARVLGLDKDEGKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASPETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKAILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(5114..6016)
                     /locus_tag="SB854_000046"
     CDS             complement(5114..6016)
                     /locus_tag="SB854_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG0956099.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCTKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSSVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFDDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMIESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSSQEKDKLEKSLIKYQYKGE"
     gene            complement(6013..8217)
                     /locus_tag="SB854_000047"
     CDS             complement(6013..8217)
                     /locus_tag="SB854_000047"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEG0956100.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKKEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYSEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNVA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLNGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCGNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNDAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(8334..10904)
                     /locus_tag="SB854_000048"
     CDS             complement(8334..10904)
                     /locus_tag="SB854_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HEG0956101.1"
                     /translation="MKKKILYIVVFFVVLILALFIVLKNGIVISSIQFDFLKLEQLYI
                     KLDKKLIVRAKNITINETQNSEISSQTHSSDNASTEILKITKNLKYLYTFVKEIDIQN
                     LNIKDNHVRILFKDNEFFIDNDLLFLKLTLQRQNKELIADIKKLLLKDYDLSIDGNLS
                     INTKSEFYYFQGRASGELLDFNASISYKDKNLAYKIEDLNIRNITEIFKRVNKRIELP
                     QSLNLWVAYRAKGEFYHLDYLQGFIDFTKDNYYLDNISASGYVNNVKVRLDDKMNAIE
                     IPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLFDEKKVGIYLRIKSDNLKFDE
                     KLAKALEDYHFSLPFYQKSGKIKSDLELKIDFHDKGEISYSGILALENASISLADFNI
                     TKAFVKLNQNDLNIENASVKNGFLEADFNAKFDLQKQQGNFNTQISRLYFDNAELLDL
                     KNQNVEVKLDYSQNVNISIPQWNLILNFKDGLEANLNNPKILFSFSPLLKKLGFINAK
                     NVYYKTLNFEDFNASVNDAYFKNNLLINGQTPYENDSFDIVKNKGIMEIHTQSDTASA
                     KISSDNKEIHLKNLSYIYRKHSNSSNSTFDIATNTQNISFGGANVALILADSNKTLAF
                     DRVEADLKGNALDLKGSRGNAKFDLYYSSNDLNLNVSNIDDNYLNEFLQKQAVQDGVF
                     NLSIKGSGLEYFDGQIDFKNTYVKDLKGINQLISFIDTVPSLLMFKSPTFNQKGLSLH
                     DGKIIFNRKKDLLSVSAINLNGDSVDIYGLGSANLRLNTVDFSLELKTLKSASEAISK
                     VPILNYVILGKNQEISTNLKIDGSIDDPKFHTEILTDTLKTPFNLIKNIIQLPANLLN
                     "
     gene            10819..11820
                     /gene="mltG"
                     /locus_tag="SB854_000049"
     CDS             10819..11820
                     /gene="mltG"
                     /locus_tag="SB854_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEG0956102.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSNIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLGLDKDILLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSEKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSSYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            11901..12332
                     /gene="flgB"
                     /locus_tag="SB854_000050"
     CDS             11901..12332
                     /gene="flgB"
                     /locus_tag="SB854_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEG0956103.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDNKELQLAVTEEEHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            12342..12836
                     /gene="flgC"
                     /locus_tag="SB854_000051"
     CDS             12342..12836
                     /gene="flgC"
                     /locus_tag="SB854_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HEG0956104.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPAIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTISQSAID
                     LLRG"
     gene            12843..13139
                     /gene="fliE"
                     /locus_tag="SB854_000052"
     CDS             12843..13139
                     /gene="fliE"
                     /locus_tag="SB854_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEG0956105.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEINDLNKTQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            13146..14954
                     /locus_tag="SB854_000053"
     CDS             13146..14954
                     /locus_tag="SB854_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG0956106.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDACLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFIQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNNQTSTNN"
     gene            complement(14951..15652)
                     /locus_tag="SB854_000054"
     CDS             complement(14951..15652)
                     /locus_tag="SB854_000054"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956107.1"
                     /translation="MISLVKFSDTAIEALRKESEHLYNNTYAVVAHAIGFSRKDIQSD
                     KSFKEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFSTKAQVYINDETKNHKIFTFK
                     MAAKNLAETTKNLKIIQANIKKYSSSSNEFLALEYNKIRSNLGELLRSIEELRVVEDR
                     EKLYLIIKNLQKGKEILKEIDTLTLSNVEHLISVRKITTAEGISILNDTTFAAKIAEE
                     LIGAVEVIFSKDISN"
     gene            complement(15806..16045)
                     /locus_tag="SB854_000055"
     CDS             complement(15806..16045)
                     /locus_tag="SB854_000055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956108.1"
                     /translation="MAIIVAALLAQQISLENSLAATLGTSVGGVVTAVLASLSTNIEG
                     KKLAFANCIFNFGIAFLIVLIFPYFIHFLIFYPLR"
     gene            complement(16093..16596)
                     /locus_tag="SB854_000056"
     CDS             complement(16093..16596)
                     /locus_tag="SB854_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010891862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HEG0956109.1"
                     /translation="MAILLIGMTNLGIGFKVFSGDLLEKILVKSTDTKIKSILFGTLS
                     TLIMQFSILVSIVTISFLSAGLISLGAGIGIIFGVNLGNTASSWLIVGLTNIKILMLA
                     IPLLIIGVLFFFQKDSILKGLGNIFIGIGFFFLGVDYIKSGFENFKHIIDLSRFDFAG
                     FKGVFVF"
     gene            complement(16717..17151)
                     /locus_tag="SB854_000057"
     CDS             complement(16717..17151)
                     /locus_tag="SB854_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956110.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDERTLLEPIKMDIYPKF
                     CDLIDEKIREFKENIQNANLTLKNSNQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAENLREFLMDEFEKLKG"
     gene            complement(17151..17468)
                     /locus_tag="SB854_000058"
     CDS             complement(17151..17468)
                     /locus_tag="SB854_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEG0956111.1"
                     /translation="MIENISASLWTKQDLNAYQIFDVRTPLEWEEGILPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDESKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KGC"
     gene            complement(17465..19291)
                     /gene="htpG"
                     /locus_tag="SB854_000059"
     CDS             complement(17465..19291)
                     /gene="htpG"
                     /locus_tag="SB854_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HEG0956112.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEIDDANK
                     EEQGTSITLYLKDDEFANAYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKAEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGIKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVSINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
     gene            complement(19363..19731)
                     /gene="crcB"
                     /locus_tag="SB854_000060"
     CDS             complement(19363..19731)
                     /gene="crcB"
                     /locus_tag="SB854_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEG0956113.1"
                     /translation="MLNTLLVVGFGGFIGAILRMLSINLVNKFFPYSISFGALFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYLHFALN
                     IILNVFLCLFAAWLGFLIFK"
     gene            complement(19725..20417)
                     /locus_tag="SB854_000061"
     CDS             complement(19725..20417)
                     /locus_tag="SB854_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEG0956114.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDEKWLENTRKKM
                     QELLDQERAKLC"
     gene            complement(20398..21594)
                     /locus_tag="SB854_000062"
     CDS             complement(20398..21594)
                     /locus_tag="SB854_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG0956115.1"
                     /translation="MKILLTLIFSIVVLFGRGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSRVYVGEVFPITIYARTTENIKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLFNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYALWFLAVLFGVLFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(21591..22238)
                     /gene="purQ"
                     /locus_tag="SB854_000063"
     CDS             complement(21591..22238)
                     /gene="purQ"
                     /locus_tag="SB854_000063"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
                     /protein_id="HEG0956116.1"
                     /translation="MKVAIIRFPGTNCEFDTTYAFEKLGVKTQIVWHEEKEFDADLVV
                     LPGGFSYGDYLRCAAIAKLAPAMQGVFNHAKKGGYILGICNGFQILLESGLLKGAMKH
                     NNNLSFISKNQSLRVVSNDNAFLKNFKKDEIINLPIAHGEGNYYADETTLKELQDKDL
                     IILKYEPNPNGSVFDIAGICDENKKIFGLMPHPERACEKVLGNDVGLKMLKGFLS"
     gene            complement(22240..22485)
                     /gene="purS"
                     /locus_tag="SB854_000064"
     CDS             complement(22240..22485)
                     /gene="purS"
                     /locus_tag="SB854_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEG0956117.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELIIEKE"
     gene            complement(22494..23204)
                     /locus_tag="SB854_000065"
     CDS             complement(22494..23204)
                     /locus_tag="SB854_000065"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEG0956118.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVEIISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(23206..24540)
                     /locus_tag="SB854_000066"
     CDS             complement(23206..24540)
                     /locus_tag="SB854_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEG0956119.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIVEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDMASKELKKYPNVKGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRIASE
                     NQEYKADPKNKISNASLVVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            24658..24948
                     /locus_tag="SB854_000067"
     CDS             24658..24948
                     /locus_tag="SB854_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HEG0956120.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAVEENDIQSIEELNKAIDMFMK"
     gene            25060..27633
                     /locus_tag="SB854_000068"
     CDS             25060..27633
                     /locus_tag="SB854_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG0956121.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNNEVVPLHLLWALSVDS
                     TSILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKMDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGASEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYIADRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASNAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(27661..29592)
                     /locus_tag="SB854_000069"
     CDS             complement(27661..29592)
                     /locus_tag="SB854_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEG0956122.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTIARKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(29589..30140)
                     /gene="maf"
                     /locus_tag="SB854_000070"
     CDS             complement(29589..30140)
                     /gene="maf"
                     /locus_tag="SB854_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HEG0956123.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKVKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            complement(30140..32668)
                     /gene="alaS"
                     /locus_tag="SB854_000071"
     CDS             complement(30140..32668)
                     /gene="alaS"
                     /locus_tag="SB854_000071"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEG0956124.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFTNAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDKLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGQEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYVYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDVVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELFMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLENTPFYATSGGQSADSGFIAKREVL
                     DTQKFFNLNLSFIKAGEELKVNDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNKMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILSGIKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDVPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            32783..33856
                     /locus_tag="SB854_000072"
     CDS             32783..33856
                     /locus_tag="SB854_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS aminotransferase family
                     protein"
                     /protein_id="HEG0956125.1"
                     /translation="MNFINLQAQYLTYKDEINAEIESVLSSSSFIGGAKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRVLDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFKAVQKAITPKTKAVIAVSMFGQMSDLRALEEILKDKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQIYNANLKNCQIPQINPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            33861..34751
                     /locus_tag="SB854_000073"
     CDS             33861..34751
                     /locus_tag="SB854_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEG0956126.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDIFYDIFYDDLDKFLNQNNDIIIIATPTNSHLTIAKKVFKQCKCVLIEKPLALNL
                     KEIDEISNLAKEYSIKVGVGFCERFNPAVLALKKELENEEIISINIQRFSPYPQRISD
                     VGILQDLAVHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQS
                     WNSTQKLRKIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQP
                     NHLASTSDAYKVQEILERFA"
     gene            34748..35659
                     /locus_tag="SB854_000074"
     CDS             34748..35659
                     /locus_tag="SB854_000074"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEG0956127.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCDKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNASDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILAKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLITCPNDSDEFIHFILKYLSDFN"
     gene            complement(35719..36954)
                     /locus_tag="SB854_000075"
     CDS             complement(35719..36954)
                     /locus_tag="SB854_000075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEG0956128.1"
                     /translation="MNAINSSFIVLCTLLVLLMTPALAMFYSGMVRSKNTLNTIMNCF
                     IVFGVITLQWVVLGFSLSFGKDEGLGLVGNFENFLLEGISGYNASGVPNILFVIFQMM
                     FALIASAIITGSLVGRIKLGVLVIFLLFWSTLVYDVLAHMIWSSEGFLLKRGSLDFAG
                     GGVVHISSGVAGLVGALMVGARKSDDEDKNAHSIPYAFLGAILLFIGWLGFNAGSAGE
                     MNDIAINAFIVSIISAACGFLSWVVLEWLIHKKPTILGGLSGLVAGLVGITPACGYVD
                     IYASLVIGTLSSVFCYFGLSFIKYKLKWDDSLDAFSLHGIGGIWGGIATGLFASAKVN
                     PNVIAQNALGEGFFISGSLELLKEQIFAIVICVVLSALISFVIFKIISCFTDLRVKEE
                     VEQKGLDVSLHGEKAYTLA"
BASE COUNT        12810 a         6515 c         4999 g        12820 t
ORIGIN      
        1 aatttccatt ttgtataatt tctataaatt tttcttttgg agttttatta aacatttcat
       61 caaaaaaatc cattaatttt ccttgaaaat ataagttttt gattataaaa ttttaatcgt
      121 taaaagtagc taaattaaaa taattaaaat ttaaatttta tttgcaatgt gtaaaatttt
      181 agaagttaaa ttccgcatga tgcggaattt attatgaata tggttttgct tgagtggcgt
      241 attttacacc cagatcaaaa gctttagcat ttgcatcacg agtttttgca ggaaccatat
      301 gaagcatagt ttcttttaaa acatctaaat ctatacattt gctcatataa gcagcaattg
      361 caagtgcaac aactgattga gtagctacat ttcctacctc atctttagct atggtgataa
      421 tagggatttc aaaaatttgc cattttttat aatcttcact ttcaggatgt actaaatttg
      481 gctctacaac tataatacct ccttctttta cacccccacg aaaaccttta taacccttat
      541 ctgcagtcga aagcataaaa tctacttccc cttctacagc ataaggaaat aaaatttctt
      601 tatcatcaat gataatatcc accttagtag ggccaccacg cacttgtgaa gtgtaagtag
      661 aagccttaaa agcttgacga ccttctttaa tggctgcttc tgctaaaatt tctcctgcgg
      721 tgataacacc ttgtccgcct tcaccgccaa atcttaattg atatttcatt ttaaagctcc
      781 taaatccacc attctttttt ctttggctgc acgacgtact tcttcataag cgtggcagta
      841 ttctggctga gaattatctt catgtaaaat tcctgttgga aatttatctt ttctttcttc
      901 aaaatccatg ctttcaaatt tagctttatc cacaacgcga tttttaatcc aatcaagcat
      961 agctacagct tcgcccattt tgttttttct gcctagattg atatgacaat ttgaaaaaac
     1021 atctacaaaa ctataaccct tatgcgctaa agccttataa attaaatttt caagcttatt
     1081 agcttcgatc acattacccc ttgccacaaa agaagctcct gcagctttag ttaattcaca
     1141 cgcatcaaaa ttagggtcaa tatttccaaa ttgagctgtt actgtataaa aaccttttgg
     1201 agtggttggg cttgtttggg aattcgtaag tccatagatg aaattattga ttacaatatg
     1261 tgttaaatca atatttctgc gacaaccatg tatagtatga tttccaccaa ttgccaaagt
     1321 atccccatct ccacttacta caataacatg tttactagga ttggctagtt taatgcctgt
     1381 tgcataagct attgctctac catgagtagt atgaactgta ttgcaattta cataagaact
     1441 cattctgcca ctacaaccta tacccgaaac aagacaaaca tcatccatat tccaaccaag
     1501 tttttctatc gcgcggataa tacattttaa aacaacacca tcgccacatc cccaacacca
     1561 ttgagtaggc attttatcta ctcttagata ttcatcataa ttaaaagcca tttatatatt
     1621 ctcctttacc ttagcaataa tttcacttgg agtgatagga cgaccatttg cacggtgcaa
     1681 actaataaaa tcgcgacgcg aagttactct ttcaatctct tcaagatatt gtcccatatt
     1741 aagctcgctt accatgactt ttttaaattt gcttacaacc tcagcaattt ttttctcagc
     1801 cactggataa agagtaattg gacggaaaag tcccacttta atcccttgct ctcttaatct
     1861 ttgtatagct tcttttgctg aacgactcac gcttccataa gcaatgatta aaaattcagc
     1921 atcatcaagc atatactctt cataagtaca aatatcttct tgattgtttt ttattttacc
     1981 tatgagtctt tccatatttt ttttcactat aactccatct tcagttggaa aacctatatc
     2041 tccatgatga agtcctgtaa catgataacg ataacctgta aagaaaggat ttaaagttgc
     2101 aggctcattt tctcctgctg cataaggttt ataatccttt ttatcgcctt caaatttttt
     2161 acggttatat actttaatat cttttaaatc aggtaaaacc gctttaccat tcatgtgccc
     2221 tacagtttca tccataagta aaaatactgg agtcatatat ttttcagcta aattaaacgc
     2281 tctaatggtt tctgtataag cttcttcaag acttgcagga gcaatagcaa tacttgcaaa
     2341 atccccatga gttggtgctt tagcttgaaa caaatctcct tgtgctacac gagttggaag
     2401 acctgttgaa ggaccacctc tcataacatt tacaatcaca agtggaattt cagcaataaa
     2461 tgcaagtcct atttgctctg cttttaaaga aattccagga ccgctacttg cagtcatgga
     2521 ttttacccca ctcattgccg caccaatagc cacgctaata cctgaaattt catcttccat
     2581 ttgtataaaa gttccatcat ttgcaggaag catatggctt aattcatgag ctatctcact
     2641 actaggagta ataggataac ctccaaaaaa tttacatcca caatcaatcg cagctttggc
     2701 gattaaaaca ttacctgttg ctataacttc tctcattatt tttcctatgc taattttttg
     2761 tatttgttat tttttacggc tacagctcta tctttagcct cagcagtaag tttggcaaat
     2821 ttaaattcat ctctttttgc caccataata gcaaaatcag ggcaatgtat ctcacactcg
     2881 gtacagccta tacaggattc agggtgtacc acctctatca tttgtcctaa aaccgcatgc
     2941 acatcatcgc gcatagctaa aaccccagcg gggcaatagc taacacaaat attacatgct
     3001 ttacatctat gctcatctac ccaaacaggg gtatcttttg gagctgtcat actcatgttt
     3061 ttttccttta ttaacctaat attttttgaa tttcttcacc aattaaagcc ggagaatcca
     3121 ccacatgaat tccatagctt tttaaagctt cttttttagc tgcagcactt tcatcagcac
     3181 ttcctactat ggcacctgca tgccccattc ttttgccttt aggagcagtt gcacctgcaa
     3241 tgaatgctac cacaggtttg ctaatatttt ctttaataaa tttagccgct tccacttcca
     3301 aactaccacc aatttcacct atcattacaa tagctttagt ttcatcatct ttttggaatt
     3361 cacttaaaag ttctttataa gcaagaccta tgataggatc accaccaatt cctactgcag
     3421 tagaaattcc ataaccacct tgaactacct gattagcagc ttcataagtt aaagttccac
     3481 tttttgaaat aagccccacg caaccttttt taaaaataaa acctggcata atacctaact
     3541 tacattcttc agaagtgata atacctggac aatttggtcc aatgattttc ataccctttt
     3601 tattagcata ttgcttagca aacatcatat cctttacagg cgtatgctcg gtgattacaa
     3661 ctgcaagctt aatacccgca tcagctgctt caatcacgct atcacctaca gcaaaagcag
     3721 gtacaaagat caagctcacg tcagcctttg ttgctttaac cgcatctgca acggtatcaa
     3781 aaactggttt acctaaatga gtttgtccac ctttatgagg agtgatgcct ccgactatat
     3841 ttgtaccata agccatgcat tgctcggcat gaaaagttgc ttctttacct gtaaaacctt
     3901 gaactattac ttttgtattt ttattaacca atatactcat tttctatcct tatcctacta
     3961 aactttttac aagctctgca ccgtttttaa gattggttgc tgctttgata tttttaagat
     4021 ttgaattatc caaaattgcc tttgcttccg ctgcgttagt gccatctaga cgcactacaa
     4081 ttggaatatt tacctcaaca ttcttagtag cttctaaaat tccgtttgct atcctatcac
     4141 aacgaacaat accaccaaag atattgataa atataacttt tacattttta tctcttaaaa
     4201 tgatttcaaa agcctttgca acagtttcag gtgaagctcc tccacctaca tctaagaagt
     4261 ttgcaggttt tgcaccgcta taattaataa tatccatagt tgccattgct agacccgcgc
     4321 catttaccat acaagctaca tctccatcta atttcacata gcttaagcca aattcagccg
     4381 cttctctttc agcaggattt tcttcggtaa tatctctaag ttcagcaatt tcaggatgac
     4441 gataaagcgc actatcatca aaactgcatt ttgcatcaag ggcataaaaa tccccttctg
     4501 cagttttaat caaaggattg atttcaagca tattcatatc tttatccata taaagcttat
     4561 aaagtttagc tatcatggaa atgagttttt taccttcatc tttatcaagt cctaaaactc
     4621 tcgctacttc aagtccatga aacattttaa aaccgatttg tggatcaatg cctacttttg
     4681 caattttctc aggactttct ttggctactt tttctatatc catccctcct tcacttgaag
     4741 cgataagggt aatttgctct gccattctat taaataaaat agccaaataa tactctttta
     4801 ctatattagc accactttct atataaagtt tttgcacgag cttgccttca ggtcctgttt
     4861 gatgagttac taaattcatt cctaaaattt tactcgcgta atcttttacc tcatctaaat
     4921 tcttagcgat tttaacacca ccaccaagac cacgacctcc tgcgtgaatt tgagctttaa
     4981 ccgcccaaac actaccacct aattctttag cattagacac agcttcatct acgctaaatg
     5041 cgacttttcc ctttaaagta aggatgccat tgtccgcaaa aattgctttt gcttgatact
     5101 catgtatgtt catttattct cctttatatt gatacttgat taaagatttt tccaatttgt
     5161 ctttttcttg tgaactaaga tccattttca tgatttcaat cacaccttca agtcctaatc
     5221 ttgccatcac tcctaaggct ttgttttgca ccccaaattc tccatgtaaa atcacactca
     5281 taggtaaaaa ctcgccactt cttatagact caatcattct tatgcaagca ctagcaggag
     5341 ctaaataagc tgaagtttta agatgtttga ttactttagc tccacctgtt ttaacttcat
     5401 tttccaaatc atcaaattct tcttcattta aaaattcgct tatattttta tttttaacac
     5461 tcgcataaga ttttaccaaa accatatcat cattatgaaa accaataagt cttgtatcta
     5521 cacttgacat tttgacatta agttttttgg caagctcgta tttaaatctt gcattatcta
     5581 aaactcctgc catggctata attttctttg atgaaaaaat cccgctttca taaagagtat
     5641 taagtagaaa atccacagga ttagttaaaa taataaaaag cggatcttct gtaaaatctt
     5701 tgattttctt agcacaatca agcataatgc ttgtatttaa ctgaagcaat tcttctctac
     5761 tttgcccatc ttttctagca aaacctgcac taaaaagcac tatatctgaa tttttggtat
     5821 gagtataatc tttagtgcaa agtaaatcta tatttaaatt taaagcagct atgctttgag
     5881 taagctctag ttcttttgcg taaagcaaat cctcgttaat atctactaaa acaatttcat
     5941 ttgctatttc tcttaaaatc aaagcataag ctacgcttga acctacattg ccagccccta
     6001 taacagtgat tttcatcttt gtcctatttt ttctaaaata gcgttaaaag ttgcacttgg
     6061 acgcatgatt ttatttgctt tttcatcatc aaatttataa tacccaccca aatccacttt
     6121 cacaccttgt gcatcgttaa attcggctct gattttttct tcattagaag aaagctctag
     6181 ggcaatatct ttaaaaaagc tttgaagctc catatcactt gcctgtcttg ctaaatgatt
     6241 tgcaaaatac attgctaaat aaaaatgact tgttctatta tcatcttctt tgacttttct
     6301 tgatggagct ttattatttt caagccattc gcctatagcc tcatcaagac attctgctaa
     6361 aaccttagct ttatgattgc cacacttatt tgcataaaat tccaaacttg cttgcaaagc
     6421 caaaaattca cccaaactat cccaacgcag atgattttct tcgactaatt gttctacttg
     6481 tttaggtgct gaaccccctg ctcctgtttc aaacatagct ccaccattta acataggcac
     6541 aacagaaagc atttttgcac ttgttccaag ctctaaaata ggaaaaagat cggttaaata
     6601 atcccttaaa acattacccg tgatagaaat aacatcttta ccttctcgga ttaactctaa
     6661 acttcttaaa caagcttctt ttggagttaa aatggctaca tttttaccct tttcttttaa
     6721 acgattttgt accaaagtta tcatgatttt attactagct cttttgctat ctaaccaaaa
     6781 aatagcttcg gctccactaa gttctgatct ttctatacct aaatcaatcc aatttaacac
     6841 tgcatcaaat ttagcctgat tagctctata aatatcacct tttctaacct tatgttctaa
     6901 taaaacttta ccgttagaaa ctattttaaa agttccttct tctttagcca caaaggtttt
     6961 atcgtgcgat ccatattctt gagctttttt agccattaaa cctacattag atacactgcc
     7021 aagttttgaa ggatttaaag taccattttt atgcaaatct tcaataaccg cctcataaat
     7081 agttgcataa gtttgatcag gaattacggc atttgtgtcc ttttccttac cttccttatc
     7141 ccacaatctt gcgccatttt taagcattgc aggcatagaa gcatcaacga taacatcgct
     7201 tggaacatga agatttgtaa tgcctttatc tgaatttacc atagaaatat ctgcagattt
     7261 agctaaaatt tcactgtatt tttttaaaat ttcatctttt ttgcttgaat tttcgatctt
     7321 acttaaaagc tcacttaaac cattatttgg attaatgcct aatttttcaa attcatcttg
     7381 aaattcgata aataattctt taaaaaatac ttttaccgca taaccaaaaa gtataggatc
     7441 acttactttc atcattgtag cttttaaatg caaagaaaaa agcacatcat catctttgct
     7501 tgctttaatt tcttttgcat aaaattcctg aagtttttgc acatccataa aagtagcgtc
     7561 taaaatttca tttttttcaa gttttaagcc ctcttttaaa atttcttttt taccatcaac
     7621 gcttgtaaat tctatattag ccacacaatc ttgatcgatt aaaaccgctt tttcattaga
     7681 gaaaaaatcc ccttctttca tgtaagaaac acgagttttt gagtttggat taaactcaac
     7741 cacacgataa ggattgtttt ttgcatagtc ttttaccgct tttgttgaac gacgatctga
     7801 atttccttgt cttaatacag gattaaccgc tgaacctaaa actttttgat attttgtttt
     7861 aatttgcaat tcttcatcat tttttggctc atctgggtaa tttggtaaca tataaccctt
     7921 atcttgcaat tctttaatcg ccgccttaag ctgaggaata gaagctgaaa tatttggggt
     7981 tttaataaga tttgcatccg atcttttgac aagctcgcct aaaagctcta aagcatcttc
     8041 acatctttgt tcctctttta aatactcact aaaagtagct aaaatccttc cagacaaaga
     8101 aatatccgag gtttttactc ctatatgtgc cctacttaaa aaagctttca ctataggcaa
     8161 aaacgaataa gtcgcaagag ctggcgactc atctgttaag gtataagtaa tttgcatttt
     8221 tagtccttta aaatacttat ttttattttc atttttaagt atattacaaa taaaaaaaaa
     8281 tgcaagagta agtttaaagt ttgttttagt tttcaaacaa actttaaata tttttaatta
     8341 agtaaattag caggaagttg tatgatattt ttaataagat taaaaggggt ttttagggta
     8401 tctgttaaaa tttcggtatg aaatttaggg tcatctatgc ttccatctat ttttaagttt
     8461 gtgctaattt cttgattttt acctaaaatt acataattta aaattggaac cttggatata
     8521 gcttctgaag ctgattttaa agttttaagc tctaaactaa aatccactgt atttaatctt
     8581 aaatttgctg atcctaaacc atatatatct acactatcac catttaaatt aatagccgaa
     8641 acacttaaaa gatctttttt tctattaaaa ataatctttc catcatgtaa gcttaaacct
     8701 ttttgattaa aagttggaga tttaaacatc aataaacttg gtacagtatc gataaaggaa
     8761 ataagctgat ttataccttt taaatccttc acataagtat ttttaaaatc gatctgtcca
     8821 tcaaaatact ccaatccact tccttttata cttaagttaa acactccatc ttgaacagct
     8881 tgtttttgta aaaactcatt taaataatta tcatcaatat tgctaacgtt taaatttaaa
     8941 tcattagaag aataataaag atcaaatttt gcatttcctc tagaaccttt aagatctaaa
     9001 gcattgcctt ttaaatcagc ttctactcta tcaaaagcca aagttttatt agaatctgcc
     9061 aaaattaaag ctacatttgc tccaccaaaa ctaatatttt gggtattagt agcaatatca
     9121 aatgttgaat ttgaagagtt ggaatgtttt ctataaatat aacttaaatt ttttaaatga
     9181 atttctttat tatcagaact tattttagca cttgctgtat cactttgagt atgaatttcc
     9241 ataatgccct tattttttac aatatcaaag ctatcatttt cataaggagt ttgaccgttg
     9301 ataagtaaat tatttttaaa ataagcatca ttaacacttg cattaaaatc ttcaaaattt
     9361 aaagttttat aataaacatt tttagcattg ataaacccaa gctttttaag taatggagaa
     9421 aatgaaaata aaatcttagg attattaaga ttagcctcaa gtccatcttt aaaatttaaa
     9481 atcaaattcc actgaggaat gctaatgtta acattttgcg aataatctaa ttttacttct
     9541 acattttgat tttttaaatc taaaagctct gcattgtcaa aataaagcct tgaaatctga
     9601 gtattgaaat ttccttgctg tttttgtaag tcaaatttag cattaaaatc agcttctaaa
     9661 aagccatttt taacactggc attttctata tttaaatcat tttgatttaa ttttacaaat
     9721 gcttttgtaa tattaaaatc agccaaagaa atactagcat tctctaaagc taaaatacca
     9781 ctataagaaa tttcaccctt atcatgaaaa tcaattttaa gctccaaatc acttttaatt
     9841 tttccgcttt tttgataaaa aggtagtgaa aaatgataat cctctaaagc tttagcaagt
     9901 ttttcgtcaa attttagatt atcagactta atgcgcaaat aaatcccaac ttttttttca
     9961 tcaaacaaat catatagata aaccttacta gaacttaaat cagcaccatt atagaaagct
    10021 ttattaaaga caaaatcgag cttttgtttg tttaaattta aatcgagttt tggaatttca
    10081 atagcattca ttttatcatc caagcgaact ttgacattat taacataacc tgatgcacta
    10141 atattgtcta aataataatt atctttagta aaatctataa agccctgcaa ataatctaaa
    10201 tgataaaatt ctcccttagc cctatatgct acccaaagat ttaaactctg cggaagttct
    10261 attcttttat taactctttt aaaaatttcc gtaatatttc taatgtttaa atcttctatt
    10321 ttataagcta aatttttatc tttgtaagag atgcttgcgt taaagtcaag caattctcca
    10381 cttgctctac cttgaaaata ataaaactcg ctcttagtat tgatacttaa atttccatca
    10441 atacttaaat cataatcttt taataaaagt tttttaatat cagctataag ttctttattt
    10501 tgacgctgta atgttaattt taaaaacaat aaatcattat ctataaaaaa ttcattatct
    10561 ttaaataaaa tacgcacatg attatctttt atatttaaat tttgtatatc aatctcttta
    10621 acaaaagtat atagatattt taaatttttt gttattttta aaatctctgt tgaagcatta
    10681 tcagaagagt gggtttgtga tgaaatttcg gaattttgag tctcatttat agtgatattt
    10741 tttgctcgta caattaattt tttatctaat ttaatatata attgttccaa ttttaaaaaa
    10801 tcaaattgga tactagagat gacaattcca tttttaagca ctataaacaa agctaatata
    10861 agcacaacaa aaaatacaac aatatataaa attttctttt tcatacgcaa cttctttttg
    10921 atatttattt tggggatttt ttattatcta actcagcctt taaaaagcaa ttctgtggta
    10981 tttattcccc aaggttcaat ttctcaaatt ataacatatt taaagcaaaa taaatatcag
    11041 atgagtaata ttgataaata tattttattt tttttaggac accctcaatc aggctggatc
    11101 aacataggta caaaagattt aaatagagct gaatttctac ataaactcac tattgctaaa
    11161 gcagcacttc aaaccattac tcttatccca ggagaaacaa gcgtaatctt tctagaacaa
    11221 gcagccaaac aacttggact tgataaagat atacttttaa aagaatttca agctcaagct
    11281 ccttatgatg aaggagtttt tttaccagaa acttataaaa tcccgaaagg cattacagaa
    11341 aatctactca ttcaaatgct tttaaaccat gctgaaattt ccaataaaaa aacttctgag
    11401 aaaatttttg gtgattataa tccaaaaaaa tggcaccaat atatcatcat cgcttctgta
    11461 atacaaaaag aagctgctaa tgacaatgaa atgcctatag ttgcaagcgt aatttacaat
    11521 cgacttaaaa aaggtatgaa acttcaaatg gatggaactt taaattatgg aatttattcc
    11581 catgtaaaag ttaccccaca aagaataaga caagataata gctcttataa tacctataaa
    11641 tttacaggat tgcctaaaga agcggtttgt aatgtttctt tagctgctat tcgtgcagct
    11701 atttttcctt taaagacaga ttatttatat tttgtgcgtg ataaaaatac tggagttcat
    11761 atttttagca caaatataga tgatcacaat aaagccataa atttacaaaa aggaaaataa
    11821 tttttgatat ttttatacaa aatagttaaa ttggaacagt atttgcttgt taatattaaa
    11881 aattataaaa aggataaaaa atgattaacc catttaaatc aaaagaactg gtcactggtg
    11941 ctttagcggg tagaaatcta agaaatcaac tcatcaatgc caatcttgca aatgttgata
    12001 ctccttttta taaagcaaga gatattgaat ttgaaacagc tttggtaaat cgtgcaaatg
    12061 aaattttcaa aaaaaatgat aataaagaat tgcaattagc cgtaactgaa gaagagcatc
    12121 aaaaaccttg gaaattccct gatcctagta aatctactat ttacttaaga gatggtcatt
    12181 tagcaagaaa tgatgcaaat actgttgatc tagatgtaga aaccacagaa atgagtaaaa
    12241 atacagttat gataacagct cttgatggag ttttaagaag acaaagcaat atctttagtt
    12301 ctatacttga tgcaagctct aaattaagtt aaaggtaaat tatggcatac ttaagtgatt
    12361 ttgatattag tggttatggt ttaagtgctc agcgttttag aatgaatgtt attagctcta
    12421 atatagctaa tgcaaacact acaagaacag ctgaaggtgg gccttataga agacgcgaag
    12481 tgatctttaa agcaacagat tttgataagc ttttaaatga gcaaattaac aaagataata
    12541 attttttaaa atatgaaaat cctttaaatg atccaagttc gccagaagaa gctaaacctg
    12601 ctattcaaag tgttgtagtg gataaagtgg tcagagatga caaagatttt cgtatgaagt
    12661 atgatccaag ccatcctgat gcaaatgctg aaggttatgt agcgtatcca aatgtaaacc
    12721 ctgttattga aatggcagat ttgattgaag ctacaagagc ttatcaagcc aatgtaagtg
    12781 cttttacaag tgcaaaaact atatctcaaa gtgcgattga tttattaaga ggataataaa
    12841 aaatgaacaa tattaatgat ttaagattaa ataataatat ttcaaatacc aacaaaagtc
    12901 aaaattccac aggaattggt gatgaatttg ccaagatgct taaaaatgaa atcaatgatt
    12961 taaataaaac acaagaaagt ggagaagctg caatgacaga cattgccaca ggacaagtaa
    13021 aagatttaca tcaagcagct atagctatca ctaaagctga aagcagcatg aaatttatgc
    13081 tagaagtaag aaataaagca atcagtgctt ataaagaaat cacaagaact caaatttaaa
    13141 ccctaatgca agaatataaa aaaaataggg tttcaaaagt tgcctttgcc tactgcatgg
    13201 cacttttgtt tatgattatt tttatcagct ctactttttt tcttacatca aaacgtcata
    13261 tacctaacac tgaaaaagat caatacgctc ttgctctaag aggatcgatt ataaccaaag
    13321 ataattttac tatcacaagt tctaaacaaa tttatcgtgc tgaaattgat cttagaagca
    13381 ttaacaaaga taaatttgat ctatttttaa agctttttca aatttatagt gggataagta
    13441 acgatcaagt agcagatatt aaaaaaagaa tgcaaaatca aaaaaaacgc tcttataatt
    13501 ttgttctttt acaaaactta gactccaagc aagcaagcta ccttaaagat cttgctaaaa
    13561 aactttatat acaaggtttt ttcaaagctt ttacaaataa ctcaggaaga gttgaaacaa
    13621 gaggattaaa tatcatcgaa catgaagaag atagaattta catgtcaaaa gattctttta
    13681 ctcctattat cggttatact aaaatgatat tagatccaga aagtggaatt ttaaaaaata
    13741 taggagttaa aggtttagaa aaatactacg atgcatgtct aagccctgtt caaaatgaaa
    13801 aaattcaagg acttaaagat ataggtggaa atattatttt aaatctaaat tcactacaac
    13861 aaaaaaagat caatggttgt gatttatatt taaatctttc tttaaaactg caaaaaagta
    13921 tagagaaagc tatagatcaa agaaatgagg atttaaaagc caatgaaatc atcgttgggg
    13981 taatggaaag taaaacagga agaattttag ctctagcaag ctcaaggcgt tatgacccac
    14041 aaaatcgcgg aaaggatcta tcagttctta atgcaagcgc tatagaatac ggctatgaag
    14101 caggttctgt tatcaaacct tttatcttta caacagcctt aagacttggt aaaataaaaa
    14161 tggatgaagt gattaatact tatggcggtt cttacaagct aggacgtttc accatcaaag
    14221 acgatcacaa aatggacaaa atgactatgg aggaagttat aagatattct tcaaatatag
    14281 gcatgataca aattgctaaa aggcttaaca atatagaaat cgtatcagga cttaaaatat
    14341 ttaaatttgg cgaaaaaagt ggtattgatc taccctatga acaaaaagga gaaattccaa
    14401 atcctaagcg cttaagagat atagaaaaat ctgttttaag ttatggttat ggacttaaaa
    14461 caacctttat acaactcctt gcagcttata atgttttcaa caatgatggg ttttatatca
    14521 caccacgttt agctgaaaaa ttctatcaaa atggacgctt tacaaatctt gatgatgatg
    14581 taaaaaaaga aaaaattctt tctagcgaag ccgctaaaac gatgcaaaat gttcttataa
    14641 atgttataga aaaaggaaca ggaaaaaagg caattacaca aggtattatt gcaggaggta
    14701 aaacaggaac ggcaagaata gccgaaagac aaggttacac ctcaaatcgc tacaatgcat
    14761 ccttttttgg ttttgcaaat gatttaaatc acgcctatac cataggagtt ctcgtaagac
    14821 atcctactaa accttatagt tattatgctg cacaaagtgc tttgcctatg tttaaagatg
    14881 ttgttgatat tttaatcaat gaagaatttc taacgcctat acaagacaat aaccaaacta
    14941 gcacaaacaa ctagtttgat atatctttag aaaatatcac ctcaacagca cctataagtt
    15001 cttcagcaat cttagcagca aaagttgtat cattaagtat tgaaattcct tcagctgttg
    15061 tgatttttct tactgaaata agatgttcaa cattgctcaa ggttaaagta tcgatttctt
    15121 ttaaaatttc ttttcctttt tgaagatttt taataatcaa ataaagcttt tcacgatctt
    15181 caacaactct aagctcttcg atacttctta aaagctctcc taaattcgat ctaattttat
    15241 tgtactctaa agccaaaaat tcattagaag aactagaata tttcttaata tttgcttgga
    15301 taatttttaa atttttagtt gtttcggcta aatttttagc tgccatctta aaggtaaaaa
    15361 ttttatgatt ctttgtttca tcgttaatat aaacttgtgc tttagttgaa aaatcgataa
    15421 tagcttcaaa aagaaccttt atcctagttt gatacaaata gtccaaatcc acatttttac
    15481 taaaccactt tttattttct aaaatttctt taaaactttt atcactttgt atatctttac
    15541 gactaaaacc tatagcatga gcaacaactg cataggtatt gttataaaga tgctcgcttt
    15601 ctttccttaa agcttcgatg gctgtgtcac taaatttaac caaactaatc aagatataaa
    15661 ggcttgtctt tattcttatc tttaggagct tttactattt tatttaaaaa aacaatttaa
    15721 ggagtaaaga atgaaaaaaa cgcaacacca attaaattaa acaaagtgtg aaataatgcc
    15781 actttcaaag ctatatcttc tatgtttaac gcaatggata aaaaattaag aaatgtataa
    15841 aataaggaaa aataagcact attaaaaaag ctataccaaa attaaaaata caatttgcaa
    15901 acgctaattt ctttccttca atattggtac ttaaagaagc taaaacagcc gttacaactc
    15961 ctccaacact agtacccaaa gttgctgcta aggaattttc caaactgatt tgttgtgcaa
    16021 gtaaagcagc gacaataata gccattataa ctgtgcttaa ttgtataact cctgtaagca
    16081 aagcacctaa tcctaaaaaa caaaaactcc tttaaaacca gcaaaatcaa aacgagaaag
    16141 atcaattata tgtttaaaat tttcaaaacc acttttaata taatccacac ccaaaaagaa
    16201 aaaacctata ccaataaaaa tattacccaa accttttaaa atactatctt tttgaaagaa
    16261 aaataatact ccaataatca aaagcgggat agccaacatt aaaattttaa tatttgttaa
    16321 accaacaatc agccaagaac ttgccgtatt tcctaaattt actccaaaaa taatccctat
    16381 gcccgcaccc aaagaaataa gccctgcact caaaaaagaa atcgtaacaa tagaaactaa
    16441 aattgaaaat tgcataatta aagtacttaa agtaccaaaa agtatacttt ttatctttgt
    16501 atcagttgac tttactaaaa ttttttcaag caaatcacca ctaaaaactt taaaacctat
    16561 acctaaatta gtcattccaa taagaagtat tgccactcct gctaaaagat tagcaagctc
    16621 gtcataacga attaaaataa aaatcagaac taaagtaaaa atacttcatg aaataaattt
    16681 aaaatatttt aaagaatttc cttcttcttg caatgcctaa ccttttagtt tttcaaattc
    16741 atccatcaga aattctctta aattttcagc ttcttcttcg cctttttcta gatactcaag
    16801 caataaattt tctaattctt ttaaaaaaga aaaaagttca ttttgccaga tactatcgtt
    16861 tttattgctc aaattcatgg tttgtatgaa agtcaactct ctgcttaaat ccccaagttt
    16921 ttctaaaaat tcatcttttt gattagaatt ttttaatgtt aaattagcat tttggatatt
    16981 ttctttaaat tctctgattt tttcatcgat taaatcacaa aattttggat aaatatccat
    17041 tttaataggc tctaaaaggg ttcgctcatc tatatttaaa gtaagctttt taacagcaaa
    17101 ataaagagct aaaaaagaca aagctgctat gagtaaataa attcctagca ttaacaaccc
    17161 ttaagggcta gcattccgcc atctaaattg atgctttcaa gtcccaattt ttcagctata
    17221 aattcagctg caaccatgct tctatggcca ctacgacaaa taaaagcaag ttttttactt
    17281 tcatctcttt tgctttgaaa ttcatctaaa aatttagcat ttaaaagccc ttgattatca
    17341 tataaagcca cacattgcgc attaggtaaa ataccttctt cccattctaa aggagtacgc
    17401 acatcaaaaa tttgatatgc gtttaaatct tgctttgtcc aaagacttgc agagatattt
    17461 tctatcatga aaaagccttg ttgatgattt ttgtaaggct tgcattaaat tcagcaggat
    17521 tatccactcc cataccttcg cttaattttg ccatatttaa aactaaggtt gctatatctg
    17581 cactaaagct ttcgttgttt ttaagacctg taaaaatagc gtgttttgga ttgatttcta
    17641 aaataggttt gaaattttgt tcttgaccca tttgttttaa gagttgttgc atagcaaaat
    17701 caggtttatt tttatcataa actatacaac ttggactatc tttcaaacga ctggttagtc
    17761 ttacatcttc aacttgatct tttagaagtt ctttaaattt agctacaagt ggagcaaaag
    17821 tatttttttc ttcgtcgctt agttcatttt tatcttctac ttgattaatg gatacaaatt
    17881 ttaaaccttc aaattctagc ataggagtta ctaaagaatc aatctcatcg tccatgagta
    17941 aaacttctat atttttttgt ttatactctt caagtaaagg ggaggttctt aataaacttt
    18001 cattatttcc tgctatataa aaaatttcct tttgttcgcc ttgaaggtca tttttatact
    18061 cctctaaaga gcgtaaattt tcacctttag tgcttttata aagcatgagt tttaaaagac
    18121 tatctttttc tccgccaaaa ccataaagtc cttcttttaa taccttacca aaggttttaa
    18181 agaaagataa gtatttttct ttatcattgt ttttgagttt ttcaagttca cctaaaatct
    18241 ttttaacgct agcttctttg atacctttta aaatttgatt ttcttgtaaa atttcacgac
    18301 ttacattaag tggtaaatct tctacatcga taatcccccg cacaaaacgc aaataagttg
    18361 gtaaaagttc tttatcgtca tcgctgataa atacgcgttt tacataaagt tttaagccac
    18421 tttgataatc cacacggaat aaatcaaaag gtgcattttg tggtatgaaa aataaagaat
    18481 tgtattctaa ttttccttca cttttagtgt gaagataaag taaaggtttg tttgaatcat
    18541 gaaaattttg ctcataaaat ctttcataat cttctgcttt aaggcttgat ttttgcattc
    18601 tccataaagc attggcttta ttgatttgag aaattttaag ttcagttttc ccttcttctt
    18661 cgccttcttt agcaggagta aattcttctt tttccatgaa aattggaaat tgaatgtgat
    18721 tagagtattt ttctataatg ctttcgattt tataagcatt agcaaactca tcatctttta
    18781 aatataaagt aatgcttgtt ccttgttctt ctttgtttgc gtcatcaatc tcataaccat
    18841 ttgcatcaga actccaaaga taagctttat catctaaagc ttttttactt aaaacttcga
    18901 ttttactagc caccataaaa gcagaataaa aacctactcc aaattgtcct atgagttgag
    18961 aatctttttt agcatcaccg cttaaatttt ctaaaaagct tttagtaccg ctttttgcta
    19021 tggttccaag gttgttgata agatcatctt tatccatacc tatgccatta tcactaatac
    19081 ttaaagtttt tttatcttta tcaattttga tttcaatttt aggttcgaat tttaagcttt
    19141 tatatttatc atcacttacg cttaaaaaat taagcttatc taaagcatcg cttgcgtttg
    19201 aaataagttc tcttaaaaaa atttctttat tagaatataa agagtgtatc ataagctgta
    19261 aaagctgatt aacttcggtt tgaaattgca ttttgattcc tttgtaattt tttaaagtgg
    19321 tattttagca aaaaatacaa attctaaagt aaatttaaag atttatttga aaattaaaaa
    19381 gccaagccat gcggcaaata agcaaagaaa gacatttaag ataatattta acgcaaaatg
    19441 aagataattt ccactttgca aaagaagtaa attttgataa gaaaaagtag aaaaagttgt
    19501 aaaagctcct aaaaaacctg tacttataaa gcttttaagt aaaggagata aacctttatt
    19561 ttgtgcataa gaaaacaaaa gtcctatgat aaaagaaccc aaaacattta caaaaagagc
    19621 tccaaagctg atagaataag gaaaaaattt attcactaaa tttatagaaa gcattcttaa
    19681 tattgctcct ataaatcccc caaaaccaac tactaaaaga gtgtttaaca aagcttagct
    19741 ctttcttgat cgagtaattc ttgcattttt tttctggtgt tttcaagcca tttttcatca
    19801 tttgtatcga ctaaatccat acaaatgatt ttaagtactc cgctgcttgc actaaaactt
    19861 tttgtgtcta aaatttttgc agaatccaca attaaaatag gttgaacttt aagatttaat
    19921 ttttcactta aaatttttgc tccactttga aatttaagca ttttttcatt tttagatcta
    19981 gttccttctg gaaaaatagc caaaacccta tcttcactaa ttctttcttt tgcttctttt
    20041 aaaactcgca ccaaatcacg cggatttttt ctatctatac aaagaagttt tggttttttc
    20101 atagcaactt tgaaaatagg aatttctcct aattcttttt tggcaatcca gcataaattt
    20161 ttaggatata attcttctaa agcgatgata tctaaagcac tttgatgatt cattaaaatc
    20221 atctgagctt gtggattaaa agtaccaatg atttcttgtt tataagagat agtatatctt
    20281 tgaaatttag cccaaatttt gcgaattttc caaagtgtgt tttgagattt tgtaaagcaa
    20341 aaacaaaaaa tcaccaaagc aacacttaaa acaaaaaaaa tccaaaaata aagagcttta
    20401 atttttttgt aaatcatctt tattaaccca acctattttt ccatcagaaa acaatacttt
    20461 aatataattt tgtcttttgc ccaaaacttc tactttttca tctgcatttg ccgtataaaa
    20521 ataagttgaa ggctctgtag gtaaaatttt agccctagaa ccagccttga taattgcatt
    20581 ttgagtattg gtatctacaa gaaaactaag tgcaaaacaa acaactgcca aagccagaat
    20641 aatgtaattt tttctccata caaataaaac tccaaataaa accgctaaaa accacaaagc
    20701 atattgttta taaatattta agtctttatt tacaggattt aaatcactct gagtactaat
    20761 ctcatcgtca ctaattttta attttaaatt tatattttca agctttttac tgtccttatt
    20821 gaaatacgaa aattcaaaat ttgttttact taatggcaaa atagcataat aaaaagcgct
    20881 agaagcatta aaatcccctt ttaaattttc aataccttgc ttttgaattc cttctataaa
    20941 aaagctttta agatttgtat tggttgcgtt tagttctacc atcataatga tattagcatc
    21001 atcaaaataa ctcgctttaa cttttttaat ttccaaagaa cttgccacaa ggtgtgaaaa
    21061 atctttattg aataaagtat tttcaaattt gataggatta agattgatat cagcctcttg
    21121 aaaagcttca ttatttctaa gaagtttgat agaaatttta ctcaaactag catttgaatt
    21181 tttggcttca aaccataaag ttgttttata ttcattgttg ataaattccc attttgcatc
    21241 tggattcaaa aaagataagt tagttttttc tacgcttatg ttaaaatcaa attttatatt
    21301 ttccgtagtg cgagcataga tcgtaatagg aaaaacttct ccaacatata ctctacttgg
    21361 atattcatca tttgtaagaa ccaaactccc tttggctaca aaaggatcat ctacattgct
    21421 ttcaaagtca ttgttttcat cacttggcgg aatattttga taaatttttt gttcttcttg
    21481 gggtaatttt tgtaattctt tttgcatatt ttcatcttgg ccgctaaata cagaaatttc
    21541 acccctgcca aacaatacaa caatgctaaa aattaaagtt aataaaattt tcaagataaa
    21601 aagcctttaa gcatttttaa acctacatca ttacctagaa ctttttcaca agcacgctca
    21661 ggatggggca tgagtccaaa gatttttttg ttttcatcac aaattcctgc gatatcaaat
    21721 acagaaccat ttggatttgg ctcgtatttt agaataataa gatctttatc ttgcaattct
    21781 tttaaagtag tctcatcagc gtaataattt ccctctccat gggcaattgg taaattaata
    21841 atttcatctt ttttgaaatt tttcaaaaag gcattatcat tagaaaccac tcttaaactt
    21901 tggttttttg agataaagct aagattgttg ttatgcttca ttgcaccttt taaaagaccg
    21961 ctttcaagta aaatttgaaa accattacaa atacctaaga tatatcctcc tttttttgca
    22021 tgattaaaaa caccttgcat agcaggagca agttttgcaa tagctgcgca tcttagataa
    22081 tctccataag aaaatcctcc tggtaaaaca actaaatctg catcaaattc tttttcttca
    22141 tgccaaacaa tctgcgtctt tactccaagt ttttcaaagg cataagttgt atcaaattca
    22201 caatttgtcc ctggaaatct aataatagca actttcattt tattctttct caattataag
    22261 ctcataatct tcaatgacgc tatttaccaa caactcttca cacatttttt ttacttgttc
    22321 tttggctaat ttttcatctt tctcatcaag agaaattttg atttgttttg ctatttttac
    22381 ttctttaaca ctattaaaat ttaaagaatg caaagctttt tccaccgctt tgccttgtgg
    22441 atctaaaacc ccatttttta aagaaatatt tacaataact tccatatttt tccttaattt
    22501 aatattcttt ttaaaacttc ttcataagcc atttttacat tacctagatc ttgacgaaat
    22561 ctatctttat ctaatttttc attactaaat ttatcccaga atctacaact atcagggctt
    22621 atttcatcag ctaaaacaag ctcattatct ttagttaaac ccagttcgat tttaaagtca
    22681 atcaacctta aattcttatt gtcaaaaaat ggagttaaaa tagagttgat tttcctagcc
    22741 atatttttaa tttcactaat ttgagcttca ttttgcacta aatttaaaat caaacaatgc
    22801 tcatcattga taaaaggatc gcctaaggca tcatctttaa gacaaaattc caccaaagca
    22861 aaaggtagca cagtgccatc tttaatgccc agtctttttg taagagaacc tgttgcaaca
    22921 ttgcgtacta taacttcaat aggaacaatt ttacattttt taaccacttg ttctgtatcg
    22981 cttataattt ctaccaaatg ggttttaatc ccattttttt caagcaaatg aaaaatttca
    23041 gtactgattt tacagtttaa tgcacctttt ccactttcat tgcctctttt ttctgcatta
    23101 aaagcagtta aatcatcttt aaactcacta attagtaaat tttcatcatc agttttgaaa
    23161 agttttttac cttttccttc ataaagcatt tctttttttg tcattttatt gtccttgttt
    23221 gatatttaaa attttaatag tatcaatagc tgattttaac tgtgcgtcat cattgatttg
    23281 tttttgactg attagatttt tattgtcttt attttcttgt ttatcttctt ttttattttt
    23341 atctattttt tcaagctcac tttctaaatg ttgttttaag tcgctttctt ttatagaaaa
    23401 accatcttct tgagtattta ctttacctgg aaaaacttca atatcaggtt ttacacccac
    23461 tgcttgaata gtacgcccgc ttggaagata atatcttgca atagtaagcc ttaaagcttc
    23521 agttttatta ataggtatga tttgctgaac actacctttt ccaaaagtat tttcacccac
    23581 aataacaccg cgtttaagat cttgtaaagc tccgcttacg atttcacttg cactagcact
    23641 tccaccattt acaagcacaa ccaaagaagc attagaaatt ttgtttttag gatcggcttt
    23701 atattcttga ttttcacttg cgatgcgtcc tttttgagaa acaataacac ctttatctac
    23761 aaataaattt acaagtccta tggcttgatt taaaagtcca ccaggattat ttctaagatc
    23821 taaaataact cctttaacat taggatattt tttaagttct ttacttgcca tatctacaac
    23881 atttttatca aaatttgtaa ccctaagata aagaatgttt tcattttcta tcatttttgc
    23941 ataaacactt tctatcttaa taatttctct tgtaagtgta acatcaaaag gttttgttgc
    24001 accttttcta aaaatagtta aagtgatttg agtttttggc ttaccacgca ttttatctac
    24061 agcatcattg agattaattc ctaaagtggc ctcatcatta atttttaaaa taatatctcc
    24121 tgattttatc cctgctttat ctgctggtgt tccttctata ggagaaacaa ctgttaaagc
    24181 accatctttc atacctacgg ttataccaag gccaccaaat tcgccattgg tttgaatttt
    24241 catatcatta aaatcttttt catttaaaaa agaagaatgc gcatcaagat tgcttaaaag
    24301 tcctgataaa gatttatcca ccaaatcgct gatattttga tcatccacat agtattgctc
    24361 tactatggca agagtttttg taagcttatc taaagcttct aggcgttttt gaacctgctc
    24421 ttctttttga tcaactttag cttgtaaatg acttgttaaa aatagacata aaatgaaagt
    24481 agtggcaaag cctgcaagac ccgcaaaaaa tcgttttgtt ttcaaaataa gctccatcat
    24541 tgagttttag tttaaagagt aaattttaat aaaaattgct taaaaattcg taaataaatt
    24601 taaattctta aaaatatgtt aaaatagact aaaaatttca aaaagaaagt taatacaatg
    24661 tgccaagaaa aacatactca tacacattct caaaaacatc ttaaagcagt ttgcaatcgt
    24721 ctaagtagaa ccataggaca tttaagcgct attaaaagaa tggttgaaaa tgacaaagac
    24781 tgtagtgaaa ttttaatcca gcttgctgcc gtaaaagccg aagttaacaa tactgcaaaa
    24841 gtagttttaa aagaacattt agctcattgt atggtacacg ccgtagaaga aaatgatatt
    24901 caaagtatag aagaattaaa caaggctata gatatgttta tgaaataatc taaaattagt
    24961 catttgtcct attatttaaa aaattttact caattaactt gacattatat gactaaagtt
    25021 atataatagc aagtctataa actaaataaa ggataaaaca tggcaaatat acaagatttt
    25081 ttaactgata atatgctttc aaaccttgaa agtgcagcat ctttagctat acattctaaa
    25141 aataatgaag ttgtaccttt acatctttta tgggctttaa gcgtagatag tacaagtatt
    25201 ttaaatcaaa ttttaaataa attaaatatt tctaaagaag ccttagagct tgaaattaaa
    25261 agcagaattt caaaacttgc aacgagttca aatgtaaacc gtgaaaatat acgcttttcc
    25321 aatgaactta taaattcatt agaaaatgct aaaggattaa tgagtgctaa tggagatagt
    25381 tatttaagtg tggatacttg gcttataagt gaaagtcaaa aaagtcctat taaagaaatt
    25441 ttggcgcaat ttttagattt aagagaattt caaaaagagc ttgaaagtct aagagcggga
    25501 cgaaaaatgg atagcaaaac aagcgatgaa actttagata gcttaaataa atttggtata
    25561 gatttaacct taaaagcaag cgagggtaaa cttgatcctg ttataggcag agaagaagaa
    25621 atcgaacgtt tgatgcaaat tttaatacgt aaaaccaaaa ataaccctat acttttaggt
    25681 gaaccaggcg taggaaaaac agctatagta gaagctttag cacaaagaat tattaaaaaa
    25741 gatgttccaa aatctttgca aaataaaaaa gtcatcgctc ttgatatgag tgctttaatt
    25801 gcaggtgcaa aatacagagg agaatttgaa gatagattaa aagctgtggt taatgaagtg
    25861 ataaaaagtg aaaatatcat tctttttatc gatgaaattc acactatagt aggagctgga
    25921 gcgagtgaag gcagcatgga tgcggcaaat attttaaaac ctgctcttgc aagaggtgaa
    25981 ctccatacca taggcgcaac tactttaaaa gaatatcgta aatattttga aaaagatgca
    26041 gccttgcaac gccgttttca acctgtaaat gtaggtgagc caagtgttaa tgaggctttg
    26101 gctatgttaa ggggtataaa agaaaagctt gaaattcatc ataatgtaac cataaatgat
    26161 agtgctttag tagccgcagc taaactttca aagcgttata tagcagatcg ttttttacct
    26221 gataaggcca ttgatttaat cgatgaagct gcagctgaac tgaaaatgca aattgaaagc
    26281 gaaccaagtt ctttaagaaa agtacgcaaa gatatagaaa ctttagaagt tgaaaatgaa
    26341 gctttaaaaa tggaaaatga tgaaaaaaat caaaaaagac tcgatgaaat cgcaaaagaa
    26401 ctagctaatt taaaagaaaa acaaaatgcc ctaaattcac agtttgaaaa tgaaaaaagt
    26461 gtttttgatg gcataagtgc taagaaaaaa gaaattgatc tgcttaaaaa tgaagcttct
    26521 ttggctaaag ctagaggtga atttcaaaaa gcagccgagc tagagtatgg aaaaattcca
    26581 agtcttgaaa aagaagtaga aattttagaa gataaatgga aaaaaatgag tgaaaatgga
    26641 gttttactta aaaatcaagt agatgaggat ttggttgctg gaattttaag caaatggacg
    26701 ggtattagcg tgcaaaaaat gttaacttct gaaaaacaaa aattcttaga agtggaaaaa
    26761 catttaaaag aaagtgtcat aggacaagat aaggccttaa gtgctttagc tagagccatt
    26821 aaacgtaaca aagcagggct taatgcggac aataaaccta taggaagctt tttattttta
    26881 gggccaacag gggtaggaaa aacacaatcg gctaaagctt tggcaaaatt tttatttgat
    26941 gatgaaaaag caatgattcg ctttgatatg agtgaattta tggaaaaaca tagtgtttca
    27001 agactcttag gtgcgcctcc aggatatata ggacatgaag aaggtggaga gcttactgaa
    27061 gccgtacgaa gaaaacctta tagcgtgctt ttgtttgatg aagttgaaaa agcacataaa
    27121 gatgtattta atgtgctttt agggatttta gatgatggta gagcaaccga tagcaaaggt
    27181 gtaacagtgg attttaaaaa taccattatc attctaactt ctaatatcgc ctcaaacgct
    27241 attatgaatt taagcggaaa agaacaagaa gatgcggtaa aaaatgagtt aaaaaatttc
    27301 tttaaacctg agtttttaaa ccgtttagat gatattatca cctttaatcc acttggaaaa
    27361 gatgaagctt atgaaatagt caagctttta tttaaagatt tacaaatgag cttagaaaac
    27421 aagggaataa aagcaagttt aagcgaaaat gcagcccttt taatcgctaa agatggtttt
    27481 gaccctgatt ttggtgctag acctttaaga agagctattt atgatcttat agaagataaa
    27541 ttaagcgata tgatacttgc tgatgaactt catgaaaatg atagtattat cattgatgca
    27601 aaagatgatg aaataatcat caaaaaagct taatcatttt gaaagtagat ctttctactt
    27661 tcaaaatata atctcgcttt cattaaattt catatttgct tttggtaatg gtgatttggt
    27721 ggtataataa gcactttctc ctttataatt tccacgataa actccattag gaatgctaaa
    27781 ttttctagtt gtatcaggga atttttctat atattgagtt aaaaattctc taaacacagg
    27841 agcagctgtt ctagccccac cttctgtata acgcataggc ttgttgttat catttccata
    27901 ccaaatgatt gcttctattt caggcgtaag tccacaaaac caagcatcaa cacttttatt
    27961 cgttgttcct gtttttcccg ctatttctat atcttttact cttgcattac gccctgtgcc
    28021 tttttcaaca acatttctca tcatatctaa aaccagaaaa ctttgcgctt catcgctgac
    28081 tttacgctca tttgagttaa attccatgat ggttttacca gttttatcct gaacttgtct
    28141 gataatttga ggatctttaa tcgtaccata gttcccaaac atggtataaa atttcgaata
    28201 ctccaaagga gaaataccaa aacttcccaa tacgattgat aaattaggcg gtatatcttt
    28261 aaatccaaat tccattagtt tagagtaaag aacatcaagc cccatatcaa gtgcgagatt
    28321 aatggtagct aaatttcttg atcttgttaa agcttctttt aaggtaatta aacctaaaaa
    28381 tttaccccct tcatttttag gtttccaatc ctcattatta cccgctccac cttcaaaaat
    28441 tctagaaata tcagcaattt cactcatagg cgaatatcct aaattaatcg ccacttgata
    28501 cacaaaaggt ttaaaagagc ttccaggttg acgcatactt tgagtagcgc ggttataatt
    28561 acttttttca taatcaactc cacctaccaa agctaaaaca tcaccacttt gatgatttac
    28621 cacgaccata gctccgttta aagtgcttaa atttgcatct ttatcgcgtt ttactatctc
    28681 atcataacca aattttaaag cattctgtgc catattttga acatctaagt ctatatttaa
    28741 aatgatttta tatccacctg tttttaagtc tttgatatta gggcttaatt gtttaatcac
    28801 ttcatctacg acataaggag cagcattttg agtaagcgta tcatcataaa cttgcggaat
    28861 ttctttaatg gctgtatcat aatctgcttt tgaaatccaa cctagattat acattcttga
    28921 aataacatta tttgctcttg agatggaaag atctaaatgc tttgtaggat cataactgct
    28981 aggtgctttt ggcataccta ctagcatagc aatctcttta aggcttagtt catttaaatt
    29041 tttatgaaaa taccccaaag ctgcggtttt tactccataa tacccatgtc caaaaaagat
    29101 aaaatttaaa tacctttcta aaatttgttc cttagttaaa atggtttcca ttttataagc
    29161 aagcaaagct tctcgaattt tacgcgcaat agttctttct ggggttaatt ccgtgttttt
    29221 aataaattgc tgagtaagag tggaagctcc ttccatggtt tttccaccac tttttataat
    29281 ttttacggca gctctaaaaa tggcgtcgat attaactcca ttatgttcaa aaaagcttgt
    29341 atcttctata gcaaccaaag cttctataag gcgtggagga agctcttcat aaggagcgta
    29401 aaaacgatgt tgttcaaaaa tattagccac aagcttgcca tttctatcgt aaatttgtgt
    29461 tgtaagagga ggtttgtatt ctttaaaagt ataaccctca gtatcagcac ttgtgaaaag
    29521 ataagccaca taaataaatc cagctataaa caaaagagta aaaaatgaaa aaatatattt
    29581 taatattttc ataaataagc ctttaaagtt tggatatcaa gccctaaagc agtgcttaga
    29641 tttcctactt gttgggtgat gaaattttga tgaaaaccct cacacataat acaacccgcc
    29701 ttgcctttat aaagatcatt ttctacataa tctcttaaag cattttcatc aaaattttta
    29761 aaataaagtg tagtttttga aagagaaaaa actctttttt caggttttac aagcaaaaaa
    29821 gccgataaaa tacttgcata ctttccattt tgcaaggcaa gcatttcata agcttctttt
    29881 ttatccttta ctttggtaag aattttttca tctatacaaa ctatactatc tgcaaaaagc
    29941 aaattttggt tttgaaaatc tttgcctaaa gtacttaaaa attgtctttc tttttcaaga
    30001 actatttttt gaacatataa aaaaggtgaa atatttttat ttaaattttc atcataatca
    30061 aaactaactt gcctaaaatc aatctttgcg gttttaagca agttagctct tgaaatggaa
    30121 cttgaagcaa gaattaacat taaagtgctt tttctatcgt ttctaagctt tgttttaaag
    30181 cttcattgat tttgcttaaa tcttttccac ctgcagtagc aaaatcatct cttccgccac
    30241 catttccacc taaaatttgc gccgcttctt taaccaaagc tcctgctttt aaaggcacat
    30301 ctttaacgcc agctgctaaa gtgatttttt catcttttac ttggataagt aaaatcaccg
    30361 ctttagcaaa tttgttttta aaatcatcaa tcatagcttt aatatcgcca ttatctatac
    30421 gttttacgca aatttcaaca ccttggatat ttttagaatc aagctcggtt ttacttgaat
    30481 ttttaagctc attttttaaa cttaaaattt catttttaag ctttttaatc ccgcttaaaa
    30541 tatcattatt tttaagttca tcttttactt tagaaagttc ttcgagttga ttttttacaa
    30601 attctaaagc cgctttagaa accacagctt caatacgtct aactccagca ctcacaccac
    30661 tttctttaac tatgtaaaaa cttcctattt gagcagtatt tttaacatga gttcccccgc
    30721 aaagttcttt gctttcacct agagttaaaa cacgcacatt gccttggtat ttttcattaa
    30781 acaatgctat agcaccgctt tttttagctt cttctaaagg catattttct aagatagctt
    30841 cgcttgagtt tataatcatt ttattgactc ttttttcaat gctttctagc tcttctttgt
    30901 ttaaagcttt atgatgagta aaatcaaatc ttagtttatt gctttcaacc aaagatcctg
    30961 cttggcttac atgagaacct aaaatttctc ttaaagcatg atgtaaaaga tgagtggctg
    31021 agtggtggcg tgcgatttgc tctctttttt ctgtatcgat tcttgcatga actatatcgt
    31081 taacttttag ttcttcgcct gcttttataa agctaagatt gagattaaaa aacttttgcg
    31141 tatctaaaac ttcacgctta gctataaatc cactatcagc actttgcccc ccacttgttg
    31201 cataaaaagg tgtgttttca agcatcaccc aacccgcatc tttaagggtg gaaacttctt
    31261 taaaatcttc atctaaaagg gctaaaattt tactttcgca ttctgctttt tcataaccta
    31321 cgaaatgatt ttctccaaat ttttcaagta agtttttaaa atctccgctt gcagttttat
    31381 ctccacttcc tttccaagaa gccttagcgc gtgctttttg ctcattcatg aaaagttcaa
    31441 atttttcttc atcaacttta agattttttt ctcttagcat atcagccgtt aaatcaagcg
    31501 gaaaaccata agtatcataa agcttaaagg ctacttctcc gctaaaaatt tctttagtgt
    31561 ttttaagctc ttcattaaaa atttcaatcc cattttctat agtgcttaaa aatctttctt
    31621 cttcaaggcg aatttgttct tttataaagt cttttttctc attaagatag gtataatgtc
    31681 cgcccattaa atcgcacaca acatcaacta gtttatacat aaaagcttgt ttaaaaccta
    31741 gcaaatatcc atgccttaaa gcacgacgca aaatacgacg caaaacataa cccctacctt
    31801 ctttatcaaa acttacccct tgtgcaagca aaaatacact tgatcttata tgatcagcta
    31861 tgactctaaa acttgctccg ctttcataaa cataagtttt attacaaagt tttgaaattt
    31921 cattgatgat tggcataaaa agcgagctat caaaattgct aaatttacct tctttaatcg
    31981 ctgttaccct ttcaagcccc attcctgtat caatgcttgg ctttggcagt gggctaagca
    32041 ctccatcagc acttctttcg tattgcataa aaacaagatt ccagatttct aaaaatctat
    32101 ctccatctcc gcccatataa tcttcgcttg agttaaaatg ctcttgtcct tggtcataaa
    32161 aaatctcact acaaggacca caaggaccag tatcgcccat ttgccagaag ttatctttat
    32221 cgccaaattt gtaaattctt tctttttgaa tgtgtttttg ccatagatta aaagcttcat
    32281 catcgttttc atgcacggtt acataaagtt tatctttagg tagttttaaa acttcagtta
    32341 caaattccca agcataagct atggcttgtt ctttaaaata atctccaaaa ctaaaattcc
    32401 caagcatttc aaaaaaagta tgatggcgtg cggtatagcc aacattatct aagtcattgt
    32461 gctttccacc tgctcttata caagtttgac agcttgtttt gcgtggaggg tttgggcgtg
    32521 gaatttctcc tgtaaatata cttttaaaag gcaccatgcc cgcattggta aaaagtaaag
    32581 ttgcatcatc aggaactaaa ggacttgacg gggttatctc atgtcctttt gatgcaaaaa
    32641 aatccaaata agcttttcta atatccatga attttcctaa agaaattttt ataaaaacat
    32701 atcataccaa aattacttta aattaagtaa aactaaaata caataaacat ttttatttaa
    32761 ttttatttct ctaaggtttt ttatgaattt tatcaatctt caagcccaat atctcacata
    32821 caaagatgaa atcaatgctg aaattgaaag cgttttatca agctcttctt tcataggcgg
    32881 tgcaaagctt aacgaatttg agcaaaattt agctcatttc ttaggtgtta aacacgctat
    32941 aggttgctca agtggaacta gtgctttata ccttgcctta agagtcttag atattggtaa
    33001 agatgatgaa gttatagtgc ctagttttac tttcatagca acagctgaag ttgtggcctt
    33061 ggtaggtgca aaacctgttt ttgtagatat aaatttatca aattacaatc ttgattttaa
    33121 agcagtgcaa aaagcaataa ctccaaaaac taaagctgtt atagcagtga gtatgtttgg
    33181 acaaatgagt gatttaaggg ctttagaaga aattttaaaa gataaaaata tcactttgat
    33241 cgaagatggt gcacaaagtt ttggcgcaag tttcaaagga gaaaaatcct gctctatagc
    33301 taaaatttca tgcacaagct tttttccttc gaagcctttg ggagcttatg gcgatggcgg
    33361 ggctattttt tgccatgatg atgaaattgc taaaaaaata agaattttac tcaatcacgg
    33421 acaaactcag cgttataaac atgaatttat aggtataaat ggacgccttg acaccttaca
    33481 agcagcgatt ttaaatgtta agttaaaata cctagaaaaa gaattagaca aaagacaaaa
    33541 attagcacaa atttataatg caaatttaaa aaactgccaa attccacaaa ttaatccaaa
    33601 tgcttttagt gcttatgcac aatacagcgt tttagttgaa gatagagcta gtgtattgca
    33661 aaaatttgaa aaagctaata taccttatgc tatacactat ccaacccctt tgcataaaca
    33721 accttgcttt agtgagtttt caaatttaga acttaaaaat tcagaatacg caagcgaaca
    33781 catcttatct ttgccttttt cacctttttt aagtgaagaa gagcaagagc aagttatttg
    33841 tatttttaaa gattgattcc atgaaaatag gtatcatagg ccttggaaaa atggggcaaa
    33901 accacttaaa tgaacttagt aaaaattctc attttaaact taatgcactt tttgatcttt
    33961 gcaaaaatcc aaacctaaat atttttgatg atatttttta tgatattttt tatgatattt
    34021 tttatgatga tttggataaa tttttaaatc aaaataatga tattatcatc atagcaacac
    34081 ctacaaattc acatttaaca atagcaaaaa aagtttttaa acaatgcaaa tgcgttttaa
    34141 tcgaaaagcc tttagctcta aatttaaaag aaatagacga aatttcaaat ttagctaaag
    34201 aatacagcat aaaagtaggt gtaggttttt gcgaaagatt taatcctgcg gttttagccc
    34261 taaaaaaaga gcttgaaaat gaagaaatta tcagcattaa catacaaaga ttttcaccct
    34321 acccacaaag aatcagcgat gtagggattt tgcaagattt ggctgtgcat gatcttgatt
    34381 tgctttgttt tttaagcaaa caagaaataa caaaaaccaa tttgcttaaa aaatacaccc
    34441 aagatcaaac aagagaaagt gaaagcatta ttctatgtga gcttgaaaaa tgtattgcta
    34501 gcatacatca aagttggaat agcacacaaa aactaagaaa aattcatctt attactaaaa
    34561 atcattttta tgaagccaat ttaaatgact tttctttatt aaaagatgga aattttatag
    34621 aacttactca acaaagtcca cttttttcag aacacgaagc tttgttaaaa cttatcgata
    34681 atcaacccaa tcatttagcc agcacgagcg atgcttacaa agttcaagaa attttagaaa
    34741 ggtttgcgtg aaattagttt tatttttaaa tatgggcgga gctacgaatt tacaagattg
    34801 tgaagttttt ttaaaaaata tgtttaatga tccttatatt ttaggaatca aaaatcgatt
    34861 tttaagaaaa tttgtagcat ggatcataac aaaggctcgc gttaaagcca tgcaagaaaa
    34921 ctataaaaaa atgggcggaa aatccccttt aaacgaactt actcaaagcc tgtgtgacaa
    34981 gcttaattta aaacaagatg aatttaaatt tgattttgta aatctttatg ttcctccttt
    35041 tgccacagaa attttgcaaa aatacacttt aaatgcaagt gatgaaatca ttctttttcc
    35101 actttatccg caccattctt gcaccacagt aacttcatct ttagaagttc tgcaaaatga
    35161 aatttcaaag caaaaaattc aagcaaaagt aaaaactata gatatttttt acaaaaatga
    35221 gctttataac gagatgatag tttcgcacat tttggctaaa aaaagtaaat ttgatgccaa
    35281 aattttgatt ttttcagcgc attctttacc acaaagcatt attgataaag gtgatttata
    35341 tgaaaagcat gtaaatgatc atgtagaaat tttaaaagaa aagctaaaag atcattttga
    35401 tgaatttatt ttagcttatc agtctaaact aggccctgta aaatggcttg aaccaaatac
    35461 aagcgatgtt ttggcaaatt taaacgataa agctctgatt taccctattt ctttttgcat
    35521 tgattgttct gaaacgattt ttgagctagg tatggagtat aaacatttag caaagtgcga
    35581 ttatgattta atcacttgcc caaatgatag tgatgaattt atccacttta ttttaaagta
    35641 tttgtctgat tttaattaag aatgattttg aagtccttgt ttatgattac aaggactttt
    35701 tagtaaaaat ttagccaact aagctaaagt ataagctttt tctccgtgca aactcacatc
    35761 taagcctttt tgctctactt cttcttttac tcttaagtct gtaaaacaag agataatctt
    35821 aaaaataaca aagcttataa gagctgacaa aaccacacaa atcacaatag caaaaatttg
    35881 ctcttttaaa agttccaaac ttccgctgat aaaaaatccc tcgccaagtg cattttgggc
    35941 aatcacatta ggatttactt tagcacttgc aaaaagccct gtggcaattc ctccccaaat
    36001 acctccgatt ccatgtaaag aaaaggcatc taaagaatca tcccatttga gtttgtattt
    36061 aataaaactt aaaccaaaat aacaaaacac agaagacaaa gtccctataa caagagaagc
    36121 ataaatatct acataaccgc aagctggagt aattcccaca agccctgcta caagcccact
    36181 aagtccacct aaaatagtcg gttttttatg gatgagccac tcaagtacca cccaagataa
    36241 aaagccgcaa gctgctgata taatacttac tataaaagca ttgatagcaa tatcattcat
    36301 ttcgccagca cttccagcat taaaacctaa ccatcctata aaaagcaaaa tcgcacctaa
    36361 gaaagcataa ggaatagaat gcgcgttttt atcctcatca tcactttttc tagcgcctac
    36421 catcaaagct cctacaagtc cagcaacccc agagctaata tgcacaacac cgcccccagc
    36481 aaaatcaaga cttcctcttt taagcaaaaa tccctcactg ctccaaatca tatgtgctaa
    36541 cacatcataa actaaagtac tccaaaaaag tagaaatatc accaaaacac ccagtttaat
    36601 tcttcccacc aaagagcctg ttatgatggc agatgcaata agtgcaaaca tcatttgaaa
    36661 aatcacaaaa agaatatttg gaacgcctga agcgttgtat ccgctaatac cctctaagag
    36721 gaaattctcg aaatttccta caagcccaag tccttcatct ttaccaaaag aaagactaaa
    36781 tccaagcact acccattgta aagtaataac accaaaaaca ataaagcaat tcattatagt
    36841 attaagagta tttttacttc ttaccatacc tgaataaaac attgccaaag ctggagtcat
    36901 aagcaaaact agcaaagtac acaacacaat aaaacttgaa tttatcgcat tcatttacct
    36961 gtcctttctt acaaaaattt aattgcgaga taattatatt taaaatgatt taaaaaaata
    37021 taaatttaag aaatatttta tatatttttt ttatcaaaat ttattttttt atcttaaatt
    37081 actataaata ggtattttaa aaaatatttt acttctctat aattcaaaat tactagcatt
    37141 aaaa
//
LOCUS       DARBBO010000003        35591 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.003, whole genome shotgun sequence.
ACCESSION   DARBBO010000003 DARBBO010000000
VERSION     DARBBO010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 35591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35591
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.003"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..214
                     /locus_tag="SB854_000076"
     CDS             <1..214
                     /locus_tag="SB854_000076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEG0956129.1"
                     /translation="EKIDTLILFRKGEVALEILPKLVEKNIKNLWLQLDISNETAKEE
                     CKKLDINFIQNRCIMLEYPYFKTKEK"
     gene            214..1425
                     /locus_tag="SB854_000077"
     CDS             214..1425
                     /locus_tag="SB854_000077"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEG0956130.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSTEQKQHGVIAASAGNHAQGVAISAKKFSIKAVIVMPEST
                     PLLKVSATKALGAEVILRGDNFDEAYAFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGISSTAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVAALLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIYVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(1422..2147)
                     /gene="truA"
                     /locus_tag="SB854_000078"
     CDS             complement(1422..2147)
                     /gene="truA"
                     /locus_tag="SB854_000078"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEG0956131.1"
                     /translation="MMKIKIIFSYDGSAFLGSATQPHKKGVQDALSGALSHLGIFSPL
                     LMASRTDKGVHASYAVASVECGDYFTNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHASYSPFMASYVHFYPKFDLGKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(2144..3169)
                     /locus_tag="SB854_000079"
     CDS             complement(2144..3169)
                     /locus_tag="SB854_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG0956132.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(3169..3945)
                     /locus_tag="SB854_000080"
     CDS             complement(3169..3945)
                     /locus_tag="SB854_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEG0956133.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKLFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLSISLLINEILGAILLILVYSLSQNFYDFLFLSLF
                     LFNLFLLSLIDIKLKAVPQILLWSTFLFAFFYAFRESEILHFLIFKEFSGGFLLNAFS
                     FGGFVFLLKSLVFFLMNFQKKDEILENLGDADIIIMSCIGGILGFEYGFLVLFIASIL
                     TLPFFIFFRIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
     gene            complement(3942..4610)
                     /gene="uppS"
                     /locus_tag="SB854_000081"
     CDS             complement(3942..4610)
                     /gene="uppS"
                     /locus_tag="SB854_000081"
                     /EC_number="2.5.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="di-trans,poly-cis-decaprenylcistransferase"
                     /protein_id="HEG0956134.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            complement(4614..5231)
                     /locus_tag="SB854_000082"
     CDS             complement(4614..5231)
                     /locus_tag="SB854_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956135.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILEDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFNFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            complement(5228..6382)
                     /gene="coaBC"
                     /locus_tag="SB854_000083"
     CDS             complement(5228..6382)
                     /gene="coaBC"
                     /locus_tag="SB854_000083"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEG0956136.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEGFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKSLIIAPAANTNMFHHFSTQNSLKMLKENKALIIEPICKVLACKDEGVGAL
                     AEVKNIFNIVKRELLKEKFWCDKSVVITGGGTKEKIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLNHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            complement(6379..7668)
                     /gene="glmU"
                     /locus_tag="SB854_000084"
     CDS             complement(6379..7668)
                     /gene="glmU"
                     /locus_tag="SB854_000084"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEG0956137.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLGNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQKKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAGHKMIKDYYYKKFQK"
     gene            7811..8545
                     /gene="fliP"
                     /locus_tag="SB854_000085"
     CDS             7811..8545
                     /gene="fliP"
                     /locus_tag="SB854_000085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HEG0956138.1"
                     /translation="MKKILLFLLLSMSLFAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            complement(8542..8766)
                     /locus_tag="SB854_000086"
     CDS             complement(8542..8766)
                     /locus_tag="SB854_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956139.1"
                     /translation="MLEFIFTLILDFTFYSIKTLEKVFLGRTALVILFVVFIALFCVK
                     GLFLYILLALELFLLLYLFLGILFLRFYKS"
     gene            complement(8792..9019)
                     /locus_tag="SB854_000087"
     CDS             complement(8792..9019)
                     /locus_tag="SB854_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0956140.1"
                     /translation="MKKVAFFLLFLFLSCTVLNAAREYCKYAYQEDRAIPLILNYGIR
                     LGVVGAGVANAPAPGGSTYNSKIDMMAARCH"
     gene            complement(9112..9882)
                     /locus_tag="SB854_000088"
     CDS             complement(9112..9882)
                     /locus_tag="SB854_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HEG0956141.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDKRKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYWTWQKHQDTTRAILAPFQENPEFWGIAVRKGDEALKDK
                     LDNFIDESRKNGFLDFLGNKYLKDIKEVFKQNNITFFL"
     gene            complement(9977..11282)
                     /locus_tag="SB854_000089"
                     /pseudo
     CDS             complement(9977..11282)
                     /locus_tag="SB854_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816965.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(11381..12400)
                     /gene="flgS"
                     /locus_tag="SB854_000090"
     CDS             complement(11381..12400)
                     /gene="flgS"
                     /locus_tag="SB854_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HEG0956142.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASYDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
     gene            complement(12404..13282)
                     /locus_tag="SB854_000091"
     CDS             complement(12404..13282)
                     /locus_tag="SB854_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0956143.1"
                     /translation="MLYKRKNIKFKNFVDLHKNLSLSKLFDFYSVFEGFEKLNILNFE
                     DDVFTNIERILLDDYLKIKSYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTL
                     KYLLETGIIKLEYSKEAKKIKDKRQKIKKELRSYVVQDKIIFSNHFTRFFFYFLKPNE
                     KLILQNRYKEVLECIKEKFELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYY
                     QDENLCFVGEVKFKNKKICKNILNLLKSKAKSLNLAPNYYIIISKNGFSKEIDKICEQ
                     NLLLLDLNDFKILLEE"
     gene            13318..14592
                     /locus_tag="SB854_000092"
     CDS             13318..14592
                     /locus_tag="SB854_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEG0956144.1"
                     /translation="MYLQISDLKKELILKKGILHFDFTASALALKCVEKEILKILPTY
                     ANTHSDSSLNSFKTQQTYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIY
                     IPPLVKERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFL
                     EKTLQKNKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISC
                     QYYDALFISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEA
                     LEEGGTPGILQLIRASLAFKIKDSIGVKNIEKKEEILKDYFFEKLKTIPNLILYAKNL
                     KTRLPIFAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKP
                     GWLRISLHYTHEKEDIDYFFNALNKTIVKLSH"
     gene            complement(14589..15413)
                     /gene="purU"
                     /locus_tag="SB854_000093"
     CDS             complement(14589..15413)
                     /gene="purU"
                     /locus_tag="SB854_000093"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEG0956145.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIHNNKTIIF"
     gene            complement(15410..16528)
                     /locus_tag="SB854_000094"
     CDS             complement(15410..16528)
                     /locus_tag="SB854_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEG0956146.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRAYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGRSFFVYKFKNYDLALARTENKISHGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGVGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKIASESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELDLEKQIFGFESIFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     KKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(16497..16988)
                     /locus_tag="SB854_000095"
     CDS             complement(16497..16988)
                     /locus_tag="SB854_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HEG0956147.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQNEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(16985..17233)
                     /locus_tag="SB854_000096"
     CDS             complement(16985..17233)
                     /locus_tag="SB854_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG0956148.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPNNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
     gene            complement(17312..17485)
                     /gene="tatA2"
                     /locus_tag="SB854_000097"
     CDS             complement(17312..17485)
                     /gene="tatA2"
                     /locus_tag="SB854_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HEG0956149.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKVQVKKEQKELNSSLEK
                     EKKEYIEKLFKTK"
     gene            complement(17498..17836)
                     /locus_tag="SB854_000098"
     CDS             complement(17498..17836)
                     /locus_tag="SB854_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HEG0956150.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            complement(17829..18743)
                     /locus_tag="SB854_000099"
     CDS             complement(17829..18743)
                     /locus_tag="SB854_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HEG0956151.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDIFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKSRLIAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNVILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPSGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            complement(18748..19272)
                     /locus_tag="SB854_000100"
     CDS             complement(18748..19272)
                     /locus_tag="SB854_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HEG0956152.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(19269..20051)
                     /gene="napH"
                     /locus_tag="SB854_000101"
     CDS             complement(19269..20051)
                     /gene="napH"
                     /locus_tag="SB854_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HEG0956153.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(20048..20788)
                     /gene="napG"
                     /locus_tag="SB854_000102"
     CDS             complement(20048..20788)
                     /gene="napG"
                     /locus_tag="SB854_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HEG0956154.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAEN
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFNVKKATNYLNDGEL"
     gene            complement(20806..23580)
                     /gene="napA"
                     /locus_tag="SB854_000103"
     CDS             complement(20806..23580)
                     /gene="napA"
                     /locus_tag="SB854_000103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HEG0956155.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEEDWKWDKAVCRF
                     CGTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNE
                     KGEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLA
                     KAGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHP
                     ILWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYN
                     HPEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAT
                     SLSYLGVKAGDKFEMKHQGVADKNWEISFDEFKKGLAPYTLEYTARVAKGDDNESLED
                     FKKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAF
                     SLTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLN
                     IMRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLI
                     LPSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKV
                     DNKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERK
                     IQGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQ
                     WRFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFM
                     KAPERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQ
                     GDLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDF
                     KKCAVKIYKA"
     gene            complement(23827..24354)
                     /gene="tpx"
                     /locus_tag="SB854_000104"
     CDS             complement(23827..24354)
                     /gene="tpx"
                     /locus_tag="SB854_000104"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEG0956156.1"
                     /translation="MSIVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(24453..25190)
                     /gene="peb2"
                     /locus_tag="SB854_000105"
     CDS             complement(24453..25190)
                     /gene="peb2"
                     /locus_tag="SB854_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HEG0956157.1"
                     /translation="MKKILILSLAASFLNAEILVYGPGGPAPVLKELALKFEEKTKEK
                     VIVTAGPTPAWVDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIVR
                     PNNPKNIKNFEDILKDGINVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAKN
                     SKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLENK
                     KALEFVDFIKSQEAQKVWKKYTWKEVK"
     gene            complement(25229..27259)
                     /locus_tag="SB854_000106"
     CDS             complement(25229..27259)
                     /locus_tag="SB854_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HEG0956158.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDAKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILRLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELTKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
     gene            27388..28410
                     /locus_tag="SB854_000107"
     CDS             27388..28410
                     /locus_tag="SB854_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956159.1"
                     /translation="MNLKIFSIIVSILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNPYSPSIQTNNSSSNVNTNNNTIQKQETNPLLDENQSLNNDTFNISIS
                     ENNQSLNNDTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERE
                     RAIKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYILDGKFLSQYRIN
                     LLKDMLSIIQDNAKDYYLSIFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSP
                     YLNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEII
                     EISSIK"
     gene            28433..31045
                     /locus_tag="SB854_000108"
     CDS             28433..31045
                     /locus_tag="SB854_000108"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEG0956160.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREEFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYTKFVDKEVILPISKKAIKIIADKHVEKDFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEARERIVAKLKSLGFIEKIEEH
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNVLHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVSIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIIMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            31050..32060
                     /locus_tag="SB854_000109"
     CDS             31050..32060
                     /locus_tag="SB854_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEG0956161.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRMLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININEKDKDKVLDYIEKSGVLWEV
                     AS"
     gene            32057..32968
                     /locus_tag="SB854_000110"
     CDS             32057..32968
                     /locus_tag="SB854_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0956162.1"
                     /translation="MNEENISIVSAFFSRISQFFNEFSWQDIKEVSLSSITSFNENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGVSIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFKK"
     gene            33158..33931
                     /locus_tag="SB854_000111"
     CDS             33158..33931
                     /locus_tag="SB854_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG0956163.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALNDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALIQALQSDKIKQFIIEKYNGSVLPAF"
     gene            33980..34750
                     /locus_tag="SB854_000112"
     CDS             33980..34750
                     /locus_tag="SB854_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG0956164.1"
                     /translation="MNLFKIIILACILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYDLKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     RSEGKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            34760..35536
                     /locus_tag="SB854_000113"
     CDS             34760..35536
                     /locus_tag="SB854_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG0956165.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTKLSSLGAIVLV
                     PMAIYSNSIKNIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAIITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
BASE COUNT        12679 a         6139 c         4642 g        12131 t
ORIGIN      
        1 agaaaaaatc gatacactta tactttttag aaaaggtgaa gtggcgctag aaattcttcc
       61 taagcttgtt gaaaaaaata ttaaaaacct atggcttcaa cttgatatta gtaatgaaac
      121 agccaaagaa gaatgtaaaa aattagatat aaattttata caaaatcgtt gcattatgct
      181 agaatatccg tattttaaaa caaaggaaaa atagtgttag agcttaataa aatttacaaa
      241 gcaaaacaac aaatttcagg atttgtaaac aaaactcctt tcatatactc ttctttttta
      301 agtgatattt gtcaaagtga gatttatctt aaaaatgaaa atttacaaat tacaggtgct
      361 tataaaattc gtggagctta caataaaata gccaatctta gcactgaaca aaaacaacat
      421 ggagtcattg cagcaagtgc gggaaaccat gctcaaggcg tggccattag tgcaaaaaaa
      481 tttagcatta aagcagttat cgtaatgcca gaatccactc cactcttaaa agtttctgct
      541 acaaaagcct taggagcaga ggtgatactc agaggagata attttgatga agcctatgct
      601 tttgcaacct cttatgctaa agaaaataat cttagcttta tccatccttt tgaagatgaa
      661 tttgtaatgg caggacaagg aactttaatg cttgaaatgc ttgatgaaat aagcgatctt
      721 gatatgatta ttgcacctgt tggaggcgga ggacttataa gcggtatctc aagtacagct
      781 aaacaaatca atcctaacat taaaatcatc ggagttggag ccaaaggagc tcctgcaatg
      841 tatgaaagtt ttcatgctaa aaaaatcaaa aatgcaaaaa gcgtacgcac tatagccgat
      901 ggtattgctg tgcgtgatgc aaatcctata aattttaaca ttatcttaga atgtgtagat
      961 gattttatcc aagttgatga tgaagaaata gctaatgcgg tattgttttt actcgaaaaa
     1021 cataaaatca tagtcgaagg tgcgggagct gcgagtgtag ccgccctgct tcatcaaaaa
     1081 ataaatacac aaaatcataa aaaaattggc gtagttttaa gcggaggcaa tatcgatgca
     1141 caaatgctaa atatcatcat agaaaaaggt ttatttaaat cttacagaaa aatgcaaatt
     1201 tatgttactt tagtagataa acctggggca ttattacacc ttacagacag cttaaaaata
     1261 gccaatgcaa atatagtaaa aatcgactat gatagatttt ctaccaagct tgattatggc
     1321 gatgcgatga tttcaattac tctagaaacc aaaggtaaag aacatcaaga agaaataaga
     1381 aaaattttaa cccaaaaggc ttttaatttc tatgaaagtt tttaataaca tatacggctt
     1441 aaataaagcc catttggcgg tgctaaaaag tgattgtatt gctttttagc ctcaatctgt
     1501 tctttgagtt ctttttcact catttttcct tctaaaactt ttaaaacgct tgctacgctt
     1561 aatctaattt gccctcttaa aaaaccatta gctttaaaat gaaaaatgct aaaatcttta
     1621 taagcataag ctctagcaat aaaaatttct cttaaagtcg ttttattatc ccctccactt
     1681 ttgcaaaaaa actttaaatc cttttttcct acaaaaaaac ccaaaagttc attagcttta
     1741 cctaggtcaa atttaggata aaaatgtaca taagaagcca taaaaggact ataagaagcg
     1801 tgagaaaata tatagcggta ttctctactt tttacatcaa atcttacttc aaaatcatct
     1861 tttacttttt caattttttt gatatggata aaaggatggg aaaatttatt aagttgtttt
     1921 tgaagatatt ctaaatttgt aaaataatct ccacactcca cactagctac agcatagctt
     1981 gcatgtactc ctttatctgt acgagaagcc atcaaaagag gtgaaaaaat acccaaatgc
     2041 gataaggccc cacttaaagc atcttgaaca ccttttttat gaggctgagt agcagaacct
     2101 aaaaaagcag agccatcata agaaaatata atttttattt tcatcaatat cgactcaaaa
     2161 tcattttctt aaaacaataa gccgaaacaa ataaacttaa agaaaaaatt ccaagacaag
     2221 ccaaaattgg aggttgagaa aaagaactta aaagtccaaa atatatagca atcactccaa
     2281 acatacctaa atacacatag cctttttcat aacgataagt aaccaaacca aaacaaagcg
     2341 caaaaagcgt actagcaagt ggaaacaagg ctatagttgt ataaatcaca aattctcttg
     2401 ctctttgtgg attttcgttt aaatcattcc agtattcata aaatttcttt gtttgaagat
     2461 tgtctgtatt aaactgagta tttactacta aagtgtcaaa ttctccacta aaaatacttt
     2521 gaccttgctc aaaattatac attttgcctt gatttaagct aaaagcaaag ctatcatctt
     2581 ttctttgcac atgcgcttct ttggctatga taagttgttc tttatcatct gctttatgtt
     2641 tagggcgata cataattatg ttttcatact tatcactatc ttgtttttct ataaaaatca
     2701 tccagtctaa aaatttttgt ccaaattctc ctgttttgta gttaaatttc acttgagtgc
     2761 ttttatagtt tacaaagtta tcctgaagtt caaatactat aggtatcatt accaaagcta
     2821 caacaagcat aaaagcacta atcaagcttg caattttaag gaaaaatttt gccaaaatca
     2881 ttggtgaaaa tcccaaagta aaaagcacta tgctttcatt ttccttagaa agcctaaaca
     2941 aagccaaagt taaagaaata aaaaaagata taggcaaggt aaaaattaaa attctaggca
     3001 acataaaccc ataaagcttt aaaagatcca aaaaactaat ctctatactt gaagtaagtt
     3061 ttgcaagttg aataaaaaac accatagata caatagcaaa aagtacgaaa aatatagaca
     3121 aattcgtact taaaaattga tttaaaacat atcttaaact aagcttcatt agaataatcc
     3181 taagttttta taaaataaaa ctgccacaaa agcgatattt aaaaagggta tcatagcaag
     3241 ttcttgctct tttattgctt taattctaaa aaaaataaaa aaaggcaaag tcaaaataga
     3301 agctataaat aatactaaaa atccatactc aaaacctaaa attccaccta tacaagacat
     3361 aataataata tcagcatcac ccaaattttc taaaatttca tctttttttt ggaaattcat
     3421 tagaaaaaaa accaaacttt ttaataaaaa aacaaatcct ccaaaactaa aagcatttag
     3481 taaaaaacct ccactaaact ctttaaaaat caaaaaatgt aaaatttcac tttccctaaa
     3541 ggcgtaaaaa aaagcaaata aaaaagtact ccaaagtaaa atttgtggta cggctttgag
     3601 tttaatatca atcaaagaaa gtaagaaaag attaaataaa aatagagata aaaataaaaa
     3661 atcataaaaa ttttgactta aagaataaac caaaataagc aaaattgcgc ctaaaatttc
     3721 attgattaac aaagaaatag acaaatgaca tttacaagtt tgacattttg cctttaaaaa
     3781 aatataagaa aaaataggaa taatttcata gtattttaat tttgtatcac aagaaaaaca
     3841 aaaagagcgc gagataaaaa agagtttttt ttcaattatc ctacttgcca aacttgtgca
     3901 aaaagaaccc aaacaagccc ctagaattat tatgaaaaat atcattttcc aaaagttctt
     3961 tctctatttc taaattcttt aataatcctt ttaaattctc tcttggtaag agatggaaat
     4021 aaagtttcac taaaataaat ttcagcatat gaacactgcc aaagtaagaa atttgaaagt
     4081 cttttagcgt ttccaacgcg aagcatcaaa tccacatcta aaggtaaatc taaattttgc
     4141 gttaaatttt cttcatttag ctcaagtttt ttttcaatca cacgcttagc agctcttata
     4201 atctcatctc ttgcaccata acttatagcc aaattaacac aaagtgcgtc acaatgcttt
     4261 gttttttctt caactaaggt aattttttct cttactttat cttccaagcg cgataaatca
     4321 cctatagctc ttaaacgcac attatttttt tcaaattttt ctaaagcttc atctaaacaa
     4381 cgatctaaaa gttcaaagat aaaatcaatt tcatctttag gacgcttcca attttccgta
     4441 ctaaaagcaa aaaggcttaa atttgaaata ttttcttcca tgcaaacttc catcaatttt
     4501 tgcatagttt tgactccttg ggaatatcca agctttgcca aaaaaccctt agctctagcc
     4561 caccgcctat tgccatccat aacaacagca aggtgtttta attcattcat ttttcatcct
     4621 ttaaaatcaa aaagcctttt gaaaacaaac aaaggttcaa tcttgttttc ttgagataca
     4681 ttaaaatcta aatgttcgtt taaaaatttt tgcaccttgg caaaaggtgt aaaaacacta
     4741 atgccttgcg agtctattaa aatttttaaa gctccaaaaa cgctaaaata taagtaaatt
     4801 tctaaatatt ttgctctttt acgcatttga aacaagcaag atttattttc aaagttaaaa
     4861 ggaatatgat aaatattttc aaaacttgca aaaagcattt cttttaatat ctgataacgc
     4921 tctatatctt tacaatctaa aagattttgt ataatgaatt ttttataaga aattttatcc
     4981 tctaaaatag cgattatcaa agccaatccc tcttcaaaag gtttgaaatt aggacgcttt
     5041 gaaagatgtt taaattgtat aactccacca ttttgcatat aaagttcagc taaatattca
     5101 gcaccaattt caagctctat catgcttttg gtttgaatct ttttatgatt taataaaagc
     5161 gtataatgtc cataacctga tttagctaaa actttcattt gtataggtaa ggtagaatta
     5221 atcatactca taatttttca caccatttta ctaattcaaa tgccaatttt tctttgcttt
     5281 gcaaagtgct tttattttca ttgtttaaag tgataaaata aagctcattt tgatcgcttc
     5341 caaaataatt tttttgatca atgatattaa gacaaaccat atcaagttgc ttatctttta
     5401 aagatttttt cgcattttct aaggcatttt gagaatcaaa ttccatctta aaacctatct
     5461 ttttgccttg aaatttgcaa gttttaagca aatcttcatt taaagataga tgcaaattta
     5521 aaccctgtaa atgctcattt tttttaattt ttccttttac actttgaggg ataaaatcac
     5581 ttaccgcagc cgtcataatc aaaaagtcat gatttaaatt tttatccaaa agctccttta
     5641 gatccttaga actttcaaat ttgcaaagct cataaggcgt atcaaattcc acagagctta
     5701 aaagttttac cctagctcct aaaaaataaa aagcatcagc tatggccttt gccatttttc
     5761 cacttgaaaa attactcaca caacgcacat catcgatctt ttcttttgtg ccgccacctg
     5821 tgataactac acttttatcg caccaaaact tttcttttaa aagttctctt ttgacgatat
     5881 taaaaatatt cttaacttca gctaaggctc ctacgccttc atctttacaa gctaaaactt
     5941 tacaaatagg ctctataatc aaagctttat tttctttaag catctttaaa gaattttgcg
     6001 tgctaaaatg atgaaacata tttgtatttg ccgcaggagc tatgataaga gatttatttg
     6061 ctgcgattaa ggtttggata aaaagattat ccgctatacc aaaagcaagt ttattgatag
     6121 aattaacact tgcaggggca aacaaaacaa ggtctacatc cttgctaaaa gctatgtgat
     6181 tgtttgaatt ttgccaactt tcattttcct cacataaaac ttcatcaacc aaggcttcaa
     6241 aactcatttt gctagcaaat tttaacaaac cattagaaag caaaactttt accctaaagc
     6301 cttctttttt aaacaaagaa ataagctcat aagatttata aaaagctata ctaccgctaa
     6361 tggctaaaag tatggttttc atttttgaaa tttcttataa taataatctt ttatcatttt
     6421 atgccctgct ctattgataa acaaagcacc cttttctaca ttgacactta ctgtgcttcc
     6481 tgctgctatg attacttcat cttcgatttt tacaggtgcg ataaattgcg tatcagaacc
     6541 tacaaaaaca ttttttccta tgatggtttt atgctttttt accccatcat aattacaagt
     6601 gatagtccca cagcctatat tggttccact atctatctca caatctccta aatagctcaa
     6661 atgccctgct tttacggtat ttaactttgc atttttgcat tctacaaaat ttcctatatg
     6721 agtgtttttt aactcacaat ttggacgcaa atgtgccaaa ggccctacat cgctattttc
     6781 tacgatggaa ttttctatca cgcttgaact tttaatgata gagtttataa tcttactttt
     6841 gccctctatc cttacatttt catatacttc acattcacct acaaattcaa catctgcacc
     6901 tataaaagtg ctttgcggta aatgaaaaat cacaccctgt tgcatccagt attttttaat
     6961 ttttttttgc atgaaatttt cagctatact gagttcaaat ttatcattaa tccccataaa
     7021 ttcatcttca tctacaaaaa ctgctttaat catcacatct ttttcttttg ctagttttac
     7081 aatgtcggtt aaataatact cttttgccgc attattgtta tcaatcaaag gtaaaagctc
     7141 ttttaaaagc ctcgagtcaa tcacataaac cccagcattg caagtattta tctctttttc
     7201 ttgcgtattt gcatctttaa attcaacaat tttttcaacg ctatcgtttt ttatcaccac
     7261 cctaccataa cttttaggat ctcttgcttt aaaaactgct agatttaatt ttgcattatt
     7321 acccaacaaa gcttccaaac ttgtttgctc aaccaaaggc atatcaccac aaagaatcaa
     7381 cactctttca tttttaggct caaacccact taaagctccc gcagttcctg gataattttg
     7441 caaatcttgc tctaaaattt gtgtttttgg aaaatattct aaaatttctt tttcaacgcg
     7501 ttctttttga tgcgataaaa ctacacttac atcatcactt aaagcaaaag ccttttttaa
     7561 aatgtgtaaa atcatacttt tttgacaaag ctcttgcaaa acctttggct tttgtgattt
     7621 tattctagtg cctaatcctg ccgctaaaat caaaatagaa gttttcattt tttacctttg
     7681 ttattaagaa gtctaaaaga ctattttagc agtttaaagt taaaatccta atacccttaa
     7741 actagttttt agtcatcaaa agataaaatt taaatttctt tagtaaaaaa caaaaaaagg
     7801 tttttaaatt ttgaaaaaaa tattattatt tttactttta agcatgagct tatttgctgc
     7861 tgaagcaact atccctacag taaatttaag cttaagtgca cccaatacac ctaatcagct
     7921 tgttactact ttaaatatag tgattgtttt aaccatactt gcactcgctc caagtatagt
     7981 ttttgttatg acttctttct tgcgtcttat tgtagtattt tcatttttgc gacaagctat
     8041 ggggacgcaa agtatgccac ctaataccat tttagtaacc ttggctttaa ttttaacttt
     8101 ttttatcatg gaacctgtag ctacaaaatc ctataatgaa ggtataaaac cttatttagc
     8161 agaaaaaata ggctatgaag aggcttttat aaaaggagca aagcctttta aagattttat
     8221 gcttaaaaat actcgcgaaa aagatttagc ccttttttat cgcatacgca atctacccaa
     8281 tcccaaaacc atagatgatg ttccccttac ggttttagtt cctgctttta tgatttcaga
     8341 gcttaaaacc gcttttgaaa tagggttttt aatctaccta ccctttttag tcatagatat
     8401 ggttgtaagc tcagttttaa tggctatggg tatgatgatg ctacctccta ctatgatctc
     8461 tttacctttt aaactcttaa tttttgtatt agtggatgga tggaatttgc tagtgcaaag
     8521 gcttgtggaa agctttgtaa cctaagattt ataaaatctt aaaaacaaaa ttccaagaaa
     8581 aagatacaaa agcaaaaata attctaaagc taaaagtata tacaaaaaca agcctttaac
     8641 gcaaaaaaga gctataaaaa caacaaaaag aattactaag gctgttcgcc ctagaaagac
     8701 tttttctagg gtcttgatag aataaaaagt aaaatctaaa ataagagtaa aaataaattc
     8761 tagcattgta aaatacaccc aaaaactaag cttagtggca tcttgcagcc atcatgtcaa
     8821 tttttgaatt gtaagtactt ccgcccggtg caggtgcatt cgcaacccca gcacctacta
     8881 cccccaatct tattccataa tttaaaatta aaggtatagc tctatcttct tgataagcat
     8941 atttgcaata ctccctagct gcgtttagta cagtgcaaga taaaaacaaa aataacaaaa
     9001 aaaatgcaac ttttttcatt atcttaaatc cttttattta aaatttagat aatgatattg
     9061 tatatcaaaa ttcataaaat taatattaat tatcaatatt ttattaaaag cctacaagaa
     9121 aaaagtgata ttattttgct taaaaacttc tttaatgtct tttaaatact tattgcccaa
     9181 aaaatctaaa aagccatttt tcctactctc atcaatgaaa ttatcaagct tgtcctttaa
     9241 agcttcatca ccttttctta cagctatacc ccaaaactca ggattttctt gaaaaggcgc
     9301 taaaatggct ctggttgtat cttgatgctt ttgccaagtc caataaatcg taagttgatc
     9361 ataaaaaaat ccatcagcct tgccttgaat cacttccaaa atagcagcat tttctttatc
     9421 aaataaatta atagttgcat tttttaaatt tttaaccgca tataaatgcc ctgtagaacc
     9481 acgctttaaa gccaaaactt tgcccttttt atctaaatct ttgatatttg taatatcaga
     9541 gttcaaagga gttaaaatag ccaaatttgc cttagcataa ggaatgctaa aatccaccac
     9601 tttctttctc ttatcggtaa ttgtcataga ggacataata agatctatct tggctgtttt
     9661 taaagcaggt attaaaccat cccaagcgat attttttact acaagtttat agccgttttt
     9721 ctttgcaaaa gcttctaaaa aatccacgct aattccactt gctttgcctg ttttatcgct
     9781 catttcaaaa ggcggatatc caagctccat tcctacaacc aaatcttttg cactcaaatt
     9841 taaagcaaaa aaagagataa aaatcaaaat aatttttttc ataatttcct ttcaattttt
     9901 tttgtaaaaa aattatacta gttttatctt attttgttat tagcaattta tttcaaactt
     9961 aaaaaattaa tacttcctaa accctagttt gtcccaaaag attatttaat ctatccatta
    10021 tagaatcagc gtaggaatca atagtgctag gttttgcttt ccaaccatta gcaagagctt
    10081 gtttaatctc agcgtctaaa gcccaattac ccatagcaga ttctttagaa atgttatttt
    10141 catacatata taaatcacct tctatgccac gctctgccca gtatctaaaa aagcttttaa
    10201 agtcactttt acctgtcata atactatcaa tgttaattgc aggaccacta aaactctctt
    10261 tagccatagc cctcttgtaa gcttctaatt ttggattaag tgtggttttt agactctcaa
    10321 caggttgtcc accttgagct tttaaaaaac tcataaacaa agtttcttta gaatagcttc
    10381 catcttcatt ttgtggataa actgacatat caggattaaa ttgccaatct tcacctctag
    10441 aaacattttt gatttcttct aaggataaac ctaaagtctc agatgataat cctttgatca
    10501 tacatcctga atcaagccaa atttcatcag cttcttttgc ttgttcaggg gttttataaa
    10561 catttgaaat taaagaattt gaaaaatctt ttaaacctgt aatattcatt ctattgcttg
    10621 gctcattaaa gtccatccat tgcgttccac ttacaccata accactaggc atagaattta
    10681 tatctgcttc actaaaactt gttttatcat ttggaaagct ttgacctaga gcattagaaa
    10741 aaagattata atattgtttt atagtatttg ctatatctat attagaataa taactgctta
    10801 cgcctaagta ttcttttgta cttgaaacaa caggatcatt ttcggcagct tttttaatct
    10861 catccaaagt agatttatgt atcttaaaat cttcaggaag tcccgcagct ttattaaaat
    10921 cacttcccat ataaccatct ttatctacac tataaccata ggctgtatta gtgtttaaat
    10981 cagcttgttt gtattttaga gtataaatag agtttttaaa ttcactagat atatcataat
    11041 taggagaact tgtcttacta cttatactaa aattagtatt attgctagta tttgttgtat
    11101 tagtagaatt taatgcttca cttcttgcta gagtttgtga atttgcattt tgaatttcat
    11161 ttaacttact agcattttgt tttaaaaaag cattagcaaa acttatttta gaattttctt
    11221 tactttcttt actctcttta ctttgcatag tttgagttat cattgatact aaagatactc
    11281 atattaattc cttgatttag atttttctgc cttcaaccta aatatattaa aataatataa
    11341 gcaagatctg ttccgttttg gggtgaaaag aaaatattta tcacaccaaa ggtaaggtaa
    11401 aataaaaatt cttaggatca ctttgaaaac ttaactctcc cttatgagcg tttatgattt
    11461 ctttagaaag agacaagcca agtccattgc ctttaagttt tgttgtttta aaagcttcaa
    11521 aaaccaattt ctcatctttt atttcacaac cattatcata cactctgatg catatttttt
    11581 cattatcata acttgctaaa attttaatca taggcttttc acattcgctt tcttctatcg
    11641 catcaatagc attataaatc aaattttgca aaaccaaacc aagaagagct ttatcagcac
    11701 aaatctgctt atccaaaaaa gatatttcaa agtctatttg agaagtgaaa ttataagagt
    11761 taatggcact ttcacactct tcttttaact ctaaaagatt aaaatttaaa gcattgatgt
    11821 gtacaccctt agtaaaaagt agagttgaat ttacgatacg ctccactcta gcaatagcct
    11881 tttggatttc aagaactata tgcttatttt taagctcact acgagcaaaa agggttgaag
    11941 caagtaaaga tatagatcca ataggatttc ttatctcatg tgccaaatga gccgctacac
    12001 tacccatgct tgcaagcctt tcattgcgtt tttcatcgct aatatctgta gctgaaacta
    12061 tagttttttc attatgcgct atgattttta ccgcataaaa cctaccttca aattcaagct
    12121 catcacgaat tttatcaaga ctaatgatac taagtaattt tggatttttc aaggcttctt
    12181 gattttgtaa aataatattt ttttctttat ctaaaatcca aagcgcacta ggcaacacct
    12241 ctataatctc atcaaccatt gcgcgtaagg agttatagtt ttcatttaaa gttttgtatt
    12301 cattttctat tacataagtt tgttctataa gactttctaa gcctttttgt agggtttctt
    12361 tttcgtttga gtctaaactt tttaaaatac tttcattcat ttatcattcc tctaataaaa
    12421 tcttaaaatc attcaaatca agtaaaagca aattctgttc acatatttta tcaatttcct
    12481 tgctaaaacc attttttgag attataatgt aataatttgg agccaaattt aaagactttg
    12541 cttttgattt taaaagattt aaaatatttt tacaaatttt tttattttta aatttaactt
    12601 ctccgacaaa acacaaattt tcatcttgat aataaagatc aagttctaaa ttcttatccc
    12661 agtaactttg cactccattg atattgaatt ttttctcaag taattctcta gaaagctgtt
    12721 caaaacaaaa actttgataa agttcaaatt tttccttaat acattctaaa acttctttat
    12781 aacgattttg caaaataagc ttttcattgg gctttaaaaa ataaaaaaag aaacgagtaa
    12841 aatggttgct aaatataatc ttatcttgga caacataaga tcttagttct tttttgattt
    12901 tttgtctttt atcttttatt tttttagctt ccttactata ctcaagtttt attatacctg
    12961 tttctaaaag atatttaagt gtagataaag ctttaaaatg ctgaattttt ctattgatag
    13021 aaaaacgctt gcgattgttt ttagctagta aagtaagagc gtaagaactt gtttcatcca
    13081 aggcgaaata acttttaatt tttagataat catcaagcaa aattcgctct atatttgtaa
    13141 atacatcgtc ttcaaaattt aaaatgttta atttttcaaa accttcaaac acactataaa
    13201 aatcaaaaag cttacttaaa gacaaattct tatgcaaatc tacaaagttc ttaaatttta
    13261 tatttttcct tttataaagc atttttatag tataatttta gcaaattttt ataaggattg
    13321 tatttgcaaa tttcagattt aaaaaaagaa ttgatcttaa aaaaaggtat tttgcatttt
    13381 gacttcacag caagtgcttt agctctaaaa tgtgtagaaa aagaaatttt aaaaattctc
    13441 ccaacctatg caaacacaca ttctgatagc tctttgaatt cttttaaaac tcaacaaact
    13501 tacgaacaag caagaaaaga tataaaaaaa agtttatcat tagatgaaaa ttttgccctt
    13561 atagcttgcg gaacaggatc aagcagtgct attaaaaaat ttcaagaatt gatcggcatt
    13621 tacattcccc ctcttgtaaa agaaagatat tttacgcaaa ttgataaaaa taccttacct
    13681 ttagttatcg tagggcctta tgagcatcat tctaatgaac tttcatttcg agaaggcttg
    13741 tgcgaatgta ttagaattcc cttggataaa aatggagaaa ttgattttga ttttctagaa
    13801 aaaactttac aaaaaaacaa aaaaagaaaa ataatcgcta gcttttcttt agcttcaaat
    13861 gttactggga tattaagtga ttacaaacgc atttctgaaa tggttcgtaa atttaaaggg
    13921 atagttgctt ttgatgcatc tagtttcatt ccctataaaa acatatcttg tcaatactat
    13981 gatgcgttgt ttataagttc tcataaatta atcggtggta ttggcggttc tggactttta
    14041 gccatcaaaa aagatctttg tggaaacaaa cctagctttg ccgcaggtgg aactgtgggc
    14101 tatgtttctc gcacttcaca atgctacctt tgcaatgaag aagctttaga agaaggagga
    14161 acacctggaa ttttacaact cattcgcgct agcttagctt ttaaaatcaa agattctata
    14221 ggggttaaaa atatagaaaa aaaagaagaa attttaaaag attatttttt tgaaaaacta
    14281 aaaactatac ctaatttaat tttatacgca aagaatttaa aaacccgatt gcctattttt
    14341 gctttcaata tcaaaggaat ttctcctttt gatatcgctt acgaacttag taaaaaatac
    14401 cacatagaaa cacgcgctgg atgtgcttgt gctgggcctt atggtcatga tttgctaggc
    14461 ttaaaagata atcaaaaact taaaacaaaa ccaggttggt taagaataag cttgcattat
    14521 acgcatgaaa aagaggatat tgattatttt tttaatgctt taaataaaac tatagtaaaa
    14581 ttatcgcatt aaaatattat agttttatta ttatgtataa aaattctatc ttcaaaagcc
    14641 aaatcaagtg cttttgaaag aacatctttt tctatatttc tacctgcttg ttgcatatct
    14701 tgccaagtaa attcatggtt tacaggcgaa acagcttgag tgataatagg accttcatca
    14761 agattattat ttacaaaatg tgccgtagct ccaattattt taacccctct ttcaaaggct
    14821 tgtttataag gatttgctcc tataaatgca ggtaagaaag aatggtgaat atttataatc
    14881 ttgccttcaa aatgcctaac aaaatcagga gataaaattc tcatatattt tgccaaaacc
    14941 aaataatcaa atttatattg ttcaagacat tttaaaatct gattttcttg ctctttacga
    15001 tctaaatttt cagcgctgat aaaatgataa ggaatttcaa atttctcaac taaatccttt
    15061 aaagagttgt gatttgaaat cacagctttg atatttgctt caagttcgtt actataatgc
    15121 tttattagca aatctcccaa acaatgactt tctttagtag caaaaacaac aatatctttt
    15181 tttctcttct cgcaaagctc tatcaaggct tcttgtccaa gcatagcctc aagcgttcct
    15241 ataaaagctt ctttatcaaa ctcaccttct aaaagagcac gaaaaaaaaa cattccttca
    15301 cctacaaatt catcgttttt tactatattg atatgatatt taaaaataac atcagaaatt
    15361 ctataaatta aacctttttg atctttggtg caaattttta atacagaaat catttagcta
    15421 aaccttttat atattctttt aattcattct ctcttgcttc ttgaagcttt aaaccaagaa
    15481 ttttaccaca aaatccagca tttatgaaat cttttgctaa aattttactt tcaaacttat
    15541 tctcataaag ccctaatctt ttagcttgct caatacgctt tttactccaa agtccaagcc
    15601 attccttcaa aggcatttca aaagcaattt ttgctagttc aaaatcactt atatcatcaa
    15661 gataaaaagc ttgatttgcg tattttaggt attctttttt aagtttagtt cttttaaaaa
    15721 atatatcttt ttctaaatta aaaaaattca aatacaaata caagaataaa gcatcgcttt
    15781 ttacaaattc tctactttgt ctgagcaaat tttgaaattc caaactctta aaaatactct
    15841 caaagccgaa aatctgtttt tctaagtcaa gttcttgcaa atatctatag ccaacatcaa
    15901 gtctagggct tttaaagaat ttataaagct ccgcattgat cctatctttg ctaagatcag
    15961 ttatatccat actttgcatc aatttcaagc tttcgctagc tatcttaaag ttaaaccttg
    16021 aagcaaatac tactgctctt aacactctta aactatcctc ttgaaagctt tgtttatcaa
    16081 tatgccttaa aaagcctact cctagatctt ttaatcctcc ataaaaatct aaaaactcat
    16141 cgttaaaaag attaatcatc atagaattta tggtaaaatc gcgtcttttg gcgccaagtt
    16201 tttcatcatt gcaaatttga acttcaaaac ctttatgtcc atggcttatt ttgttttcgg
    16261 ttctagcaag agctaaatca taatttttaa acttatacac aaaaaaactt cttccaaaac
    16321 cttgtgcacc taatttttgc ataatctttt caaaatcttt aggttttata tcataaagct
    16381 ctatatcata gtcgcaaatt tttaaaccta aaaacaaatc cctaacgcta cctccaacca
    16441 aatacgctcg tttggtataa ggctttaaaa actcagcgat aaactgtaaa tcgggattat
    16501 tttttaagct tatcttcgat atttgcaagc aaaaactcta aaaaatttat ggtcaagttt
    16561 aacctatttt caagatcatc tttttttatg ctatttaaac cttcaaaaag aactaaaatt
    16621 ctctctctaa gatgttttaa aaaaatatcc tcattaagcg tttgaacctc tgtcataaca
    16681 ctaggattta aaatttcatt ttgtaaaaaa ggctcttctt ttttaaactc tttattttcc
    16741 tgagtagaaa tttcaatatt attttgtatt ttttgctctt cttcaaattt tgccatagaa
    16801 attttatctt ctaagtcttg cggagtatca agctcttcgc atacaaactc cataggtggt
    16861 aattcatctt ttatttcagt ttttctattt aattcttgtt cttttaaaat ttcattttgt
    16921 cttctttgct cttccatgat agagctaact tcgctaatgg tttttttagc taaatcttcc
    16981 aaattcatat ttttatcaac caccttttaa attcattaat ttcttcatcg cttttcatat
    17041 taataaaaaa atccaacatt tgagtgttta agtctttatg cttggatcta aaaccactaa
    17101 gacgacgaac cgcatcgata gcgttttggt tattcggatc ttcttttaag atatttttat
    17161 aaatttctaa agcttcgtct tttaaccctt gagcctcata gatagaagct tcagtgactg
    17221 tatttttcat cactgtttcc taaaattttt ctttaattct agcaaaaagc tttttaattt
    17281 atctttaaga aaataatatg atttttaatg cctattttgt tttaaacaat ttttctatat
    17341 attctttttt ttctttctct aagctagaat ttaattcttt ttgttctttt ttaacttgca
    17401 cttttaaatc ttgattttta aaatacacat aatcaattcc aaaaataaca ccaattataa
    17461 taagcaatgg gattaaaaat accatatact ttacacttta agaaaattga ttaaacacac
    17521 taccatagta gcgaacattc tcagcatttt catttttttc tatcgtttct attgcgccac
    17581 tattgattgc tttttggata tcatcattta aatcttgata agaaaaaacc atattaatac
    17641 tgataatatt tggcaatttc tcaagcattt tataagagtt taactcatct tctaaatttt
    17701 cactttcaat cacaactata atcttttcat tttcacaaag ttctacagaa caaaaaggaa
    17761 tttcagatat agcctttttt aaatcattta tatattcttc ttttgctaaa atcaaaacac
    17821 tagaaagatt attcatcaat actcctaaac attatactat caccaaagcc tgaaacgata
    17881 aaatctttat tgtttaaaaa aataataaac tcactcatca aattttcatt attaaaagtt
    17941 ttaacaggct taaaatcact tgtgctaaaa acttcactaa ctccagcttc attatcgcta
    18001 taaacagcga attctccact aggacttaaa gcacaagtat atatcaaaaa atctttttgt
    18061 aaaaaatttt gttcttcatt ttttacaact cctatacgcc tatccgttcc acaacttaaa
    18121 ataacattat ttttaaaatc tacttgatag atattatctt tatgcatttt atcatagttt
    18181 ttcaacatct tccaattttt caaatcaaaa agttctactt cgccactctc aaaacctgca
    18241 attagtctac tcttatcttc atttaaaact gcatcattaa gactagaatg ggaaaaatta
    18301 aattttttta tattttttaa acttttatca atcaattcta tttcagaacc aatagaaatc
    18361 aaaagataag tattttcatt gataaaaaat gcttttatta tgctattttc ttcgagcttt
    18421 ttgatttgta aattttcctt ataaaaactt aaatttttag caccaaaatc accctcgcta
    18481 agtattaaaa gtgtatgttt aaaaatatca atgttgtaaa ttttagcaaa atcatcacca
    18541 taataatttt taatctttgg caaagataaa agttctttta aacttttatc tttaatgtta
    18601 tattgcaaaa tttcaccttt atcagtgcct atatataagt tttgcttatc aagctttaaa
    18661 gctgttatat tggcatttaa tttcagctca taagcataag acaaaacaca aaaaagactc
    18721 aaaataaaaa gaaatttttt catttattta ctttacaccc tcattaatca catcaattaa
    18781 atttgaacga ctttttaatt gttcattttt aaattcaggt ttaaagctat ttcccactaa
    18841 aggttttgca tcactttgtg gaacatgaca ctgagtgcaa ttaaaacgac tatcgctaat
    18901 catatctcct gtggttttat tgtgtctaaa atcataataa tgactagcag gaagtggagt
    18961 tgcaccagca tctgctgcta tagccttatc atggcagctt aagcacatat tgttatcttt
    19021 agttataggt aacaaatctt caatagcatg cggaattaat ggtggtgcat tttcataaga
    19081 acgctcaaaa cgagtagatt ccccaggctg taaagttgtg aaatttgcct ccactaaatt
    19141 tactttattt tcattttcta aacttgcttt tctaagtcca atttgttctg aacttacccc
    19201 actattcatt gcacaagcgg caaaaaatac cactgcagca cttcctaata aaaccaattt
    19261 cttcttcatc atttattcct taaatcaaaa atattaaaat tcaaagcatc atcattacaa
    19321 acttctatac atcttgcaca ccttatacac tctcctgatt tcacgctagt actttctttt
    19381 ccaaccatcc acaaaacctg tttttcagga caaatacgga tacattcata acatttagtg
    19441 catttatcac tatcatgctt tattttaagc aaagcaaaac gagaaataaa agcataaaaa
    19501 gctcctagtg gacaaaaatg tgaacaaatt gccctaggac ttaaaaaagt atcgatacaa
    19561 aaaagtataa aggctacaaa aatccaagaa cttgtagcaa aaataatccc tctatgtatc
    19621 attcctatat aagaaaaact ttcaaacaca ggcaatgaaa atacaaaaga aaggactaaa
    19681 accaagacca atacaaaata gcgtaaattt ttaggcaaaa ttaaaaattt attattaagg
    19741 gttaatttat ttcgcacaaa agcagcaaaa tctgtgatta aattaacagg acaaacccaa
    19801 gagcaaaaaa cccttcctaa aagcaaacca tagataaaaa atataatcaa agctcctatt
    19861 aaagccatta aatctatact ccagcttgct agaatgattt gcaaaactgc aaaaggatca
    19921 cttaaaggta tggtattaaa aagtctagaa gaacttaaat ttccctgcaa gataaaatct
    19981 gtagctttaa aactaaaaag cgctaaaatt ccaagctgaa cgatgcgtct agcaattaaa
    20041 tacttcatca cagttctcca tcatttaaat aattggttgc ttttttaaca ttaaaatgtt
    20101 ttgaagtatc tgcatttttt atacgacctt catctttttc atcccagcct tttacataat
    20161 gagatcctgc ttttcccaat acatactccc ttggcaaaac acgaatggcc ggtttttcag
    20221 taatacaagc cagttcacaa agcccacaac ctacacacac ttcatgatcc acactaggta
    20281 gtaaaaaagc atgtttggcg gtgcgttcat tgcgtttaag ctcaagtttt aaagccctat
    20341 ctatcaaagg acaagctcta taacaagcat cacattgaat tccccagtgt gccacacaag
    20401 aagcactatc aacaatagca atacccattt tcaaagattc tataccctgc tctaaatgct
    20461 ttttatctaa agcatcagtt ggacattctc taatgcaagg aatatccttg caaagataac
    20521 aaggaatttc tcttgcctta aaaaaaggcg taccattttt tggactatct aacaagctag
    20581 caagctttaa agtatcataa ggacaggctt ttacacaaag cccacaacga atacatttac
    20641 ttaaaaatct agcttcattt tcagccccag gaggacgcaa ggcataatta tcatcagctt
    20701 ttaaagccaa attagccaaa aatccacctc ctgtacataa acatgcagcc ttaaaggcac
    20761 taacgaaaaa ttctcttcta cctttcattt aatcaaaacc ctaaattaag ctttataaat
    20821 ttttacagca cattttttaa agtcagtttg ttttgaaagc ggacaagtcg catccaaagt
    20881 aactttattg atatatacat tctcatcaaa ccacggcaca tacacaagtc ctacaggcgg
    20941 tttgtttctt ccacgcatat ctactcttgc ttttacttta ccacgacgag attccaccca
    21001 aaccaaatca ccttgattta agcctaattt ctctccatct ttctcactca tatagcaaag
    21061 tgcttcaggc acagcacggt aaagctcagg cacacgcata gtcatagttc cactatgcca
    21121 atgctctaaa acccttcctg ttgcaagcca gaacggatac tctttacttg gtctttcagg
    21181 tgctttcata aatggcctaa agaaaatttt agccttattt ttaatactgt gctctttttc
    21241 atctttagga gctattaaat ccccatttgt aagcattttg ttaaaatcac cataaaaagc
    21301 aaaatctgaa tttggagccg cttttttagc ataataatca aatttagtat taaatctcca
    21361 ctgtgtttcc ttgccattaa ccacaggcca tcttaaaccc cttactttat gataggtatc
    21421 aaaatccgct aaatcatgtc cgtgtcctaa gccaaattta cgatattctt cccaaaggta
    21481 tttttgaacg aaaaagccat agcctgtaaa ttcttttcca tcactgcctt gaatttttct
    21541 ctcatcacct ttaacatcgg tattatcaaa gccttttgcg atggcatcgt ttggattaaa
    21601 gctttttgct tctttattgg caaatagcac atcaaaaagt gtatcatctt cgctataacc
    21661 catagctttt gcctcttcta aaacgcttgg caaggtaagc ttattatcca ctttttgctc
    21721 tttccaaact tctttaagct taaagcgttt tgcaaattct aaaatttgcc aagtatcact
    21781 catggcagca cctacaggta agacttgttg tttccaatgt tgagttcttc tttcagcatt
    21841 accataagca ccccattttt cataaatcat agcgcttggt aaaataagat cagctacttt
    21901 tgctgaaatt ccaggataac aatcacttac aacaataaaa ttatccattt ctcttgctgc
    21961 tgcaatccag tgatttgcat ttgcagtgtt ttgccatgga ttattcactt gcacccatgc
    22021 aaatttaatt tttccatctt ctaaatctct catgatatta agataaggag aacctggttt
    22081 tgggttgata gtctttgcag gaactttcca aattttttca gaaatttctc tgtgttttgg
    22141 attggctaca accatatctg caggcaaacg atgtgagaaa gttcctactt ccctagctgt
    22201 tccacaggca cttggctgtc ctgttaaaga aaaggctcca ctacctggtt tagcttgctt
    22261 tcctagcaaa aaatgtacca tataagcttg ttcatttacc caagaacctc ttgtgtgttg
    22321 attaaagccc atagtccaaa aacttacgac tttgcgattt ttctctatgt aaagattagc
    22381 taattcttga agttttttct taaaatcttc caaagactca ttatcatcac ctttggctac
    22441 tcttgcagtg tattctaaag tataaggggc taaacctttt ttaaattcgt caaaagaaat
    22501 ttcccagttt ttatcagcca caccttgatg tttcatttca aatttatcac ccgctttaac
    22561 gccaagataa gataaagaag tagcctcttc atcatctaaa gtgattacat tttctttttc
    22621 aaccgtatct ttttcacttt ctttaaattt tggatgattt ggattatttc tcataccata
    22681 accaatatca gcataaccag ttgcaaatac gcagtgatct ttgataaatt tcatatccat
    22741 agcctctgga tgattataaa caatctctct tgctatgtag ttccaaatag ccaaatctgt
    22801 atttggttta aaaataattt caatatcagc aatatttgaa gtacggttag aaaaagtgct
    22861 tagattaaca actttaacct tatcaagatt gcttagtttt ctatcactta ctcttgacca
    22921 aaggattggg tgcatttcag ccatattagc tccccaagtg ataatagtat ctgtaagctc
    22981 tatatcatca taacagcctg atggctcatc tacaccaaaa gtttgcataa aaccaaccac
    23041 tgcagaggcc atacaatgtc ttgcatttgg atcgatatta tttgttctaa aacccgcttt
    23101 tgcaagcttt aaagcagcat aaccttcttg gatagtgtat tgcccactac caaaaatccc
    23161 tatacctgta acgccgagtt cattgtaggc ttttttaaat tgtttttcca tttcatcaaa
    23221 ggctctttgc caagaaactt gttgaaattt gcctttttta tcaaattcgc ctttttcatt
    23281 catgcgaagc aaaggcataa caagacgatc ttcaccatac atgatcttag cattaaaata
    23341 acctttgata caattaagtc cgcgatttac gggtgctgca ggatcacctt ttgttgctac
    23401 gattttgcca tcttttctgg ctatcataat tccacagcca gttccacaaa atctacaaac
    23461 agccttatcc catttccaat cttcttcttg tgcaccaagc atagagcttg gaacactaag
    23521 tcctgcaaca ctagcagcac ttgcaatagc ggtattttta ataaaatccc ttctattcat
    23581 ccttattcct ccaaaataaa aaaatcatct tattataaaa aatggagtat aaaaatctct
    23641 tgaaatttta ataaaaataa taattttaaa gctctatttt ataggagttt tattgtcctt
    23701 tttatattat tcttacacaa aataaatatt aaaaataatc aacttaacaa ttaaaatata
    23761 atcaacttaa aataataaaa aaatgaagat ataaaaatta agccctaaga atgggcttaa
    23821 tcaaaattaa tggcaaccac aaccaccgca gcagctagaa ccaccaaaaa atgcatcaag
    23881 ttttgcaata tctggcattt ctgtgatttc atttacaagt tctttatatg ccactttacc
    23941 ctctttaatc acaaatacgg cacgagctaa aagcccttct aaagcacctt catttatcaa
    24001 aacaccatat ttttcaccaa attcttttgc cacaaaatca cttgcaacac ttaaattttc
    24061 aataccttct gtactgcaaa atcttcccat agcaaaaggt aagtccatac ttactacaat
    24121 cacttcagca ccattgtaac tggctacttt tttattaaat tctctagcct ctgtagcaca
    24181 aactggtgta tctaaacttg gaacacttaa aatgatttga gttttacccg ctgcaccgat
    24241 ttcaatcacg cttaaatctt tagctttaag atttacctta ggagcatctg ctccaacttc
    24301 tactgaattt cctttaagtt ttacaggatt tcctttaaaa tttactatac tcatttaatt
    24361 tccttttttg atattttaaa cattattgca attaatgttt taggagtaat tatatcctat
    24421 aaatattaat tattttttaa tttcactcaa aattatttta cttctttcca agtatatttt
    24481 ttccacactt tttgagcttc ctgactctta ataaaatcta caaattctaa agctttttta
    24541 ttttctaaac ctttttttgt aggagctatt tcagctgcac gataaatcac tgcattttta
    24601 tctttgataa ataaagcttt atcatcgcct aaagcctttg cccaatgaga ccaaatgatt
    24661 aaagcatcaa tatttggatt gttattccac tcatctacag cagctttgga atttttagca
    24721 taaattttta tatttttacg taattttacc aaattttctc tttttgcact ttttaaagcc
    24781 atatcttcat aaagtccaac ttgtcctgca ccatcaacca ccataacatt tatgccatct
    24841 tttaaaatgt cttcaaaatt tttaatattt tttggattat ttggacgcac gataatacct
    24901 gatggacgca catttaaaac gcttaaattt tccaaactta aacttggaat ttttttagca
    24961 aaatcatcca tcattgaagt attgcctgaa aaaatcaaat ctgcattttc ttttgctttg
    25021 tctacccaag ctggagttgg acctgcggtt acaatcacct tttcttttgt tttttcttca
    25081 aattttaaag caagctcttt tagcacagga gcaggaccac ctggaccata aactaaaatt
    25141 tcagcattta aaaaacttgc tgctaaactt aaaattaata tttttttcat aaaataaacc
    25201 tttctttgat aatataaagg aaattgtatc aatctatagt taactctccc ttgcaaagcc
    25261 ctgcttctat aagaaaacga gaaggagcga aagaagtttt tttattttta tcatatttag
    25321 catagcttaa ataaagtata ttttttgccc tagttactgc aacataaaaa agccttcttt
    25381 cttcttctaa gcttccaccc attcccataa gcttttgatt aggaaagcga ccttgcgcaa
    25441 gatcaatcac aaaaacaaga tcaaattcca agcccttact tgcatgtacg ctaagcaaat
    25501 taactccttt gccactactc atttcacttg cacctaaagt taaaaaatta taatacttat
    25561 aaatatcgct ataatttttt gtaagctctt ttaagacatt aaattttgtt tctatttttt
    25621 ctaaattttc actctttctt aataaatcca cctgccctgc tttgttcgtc gctcttttag
    25681 ttgcaagttc ttcgcaaatt tctctataaa aagaattttc gcaaattaaa ttgactaaag
    25741 tcaaagaatg ttttatttcc atagcttttt ttaaaaaaag atagattttt tccaaatttc
    25801 tagcgcacaa atcattgatt tttgaaagtc ttaaaatagg atgtgcgtca aattcactct
    25861 caaatttaaa acgagtttcg ctagctaatt cttctaaatc tgcaaaaagc ccaagttgat
    25921 aatttctttt ttgatgattt tgcaaattta catttttatc aggatctaaa aaacctttta
    25981 ttaaatttcc atgccctaat tttaaaagtg cgtcaaaaat ttcttttgct aaaactccac
    26041 ccacaccttt ggtatattga accaaatgaa taaaagccat gatatcctta ggatttacca
    26101 caagcgcaag catggagcta aaagctttaa cttccaaact ttcaaaaaaa cttccacttc
    26161 cctttctcac acttgcaatg ccctgctccc ttaaagctac ttcaacccca tcagcacttg
    26221 agttgttgcg aaaaatcacg gcaatttctt ccaaacttac tccgcttgta agtatcattt
    26281 tggctatatt ttgatactga tcaaataatt cttcaaaagt aagcaaagat ggggctttaa
    26341 actcatcatt tcttgtaaca ataagttctt ttggatataa tctttcgtta tttaaaatca
    26401 ctttattagc caaagctaaa atacttcttg atgaacggta gtttttattt aaagaaaaaa
    26461 tttttgcatc tttaaaacga tctttaaacc cacctatgat attaatatcc gctccattaa
    26521 aagcataaat actttgatca taatccccta cgcaaaacaa acttttacta tgaaaagcct
    26581 ctattaaaga actttgcaaa gtatttgtgt cttgatattc atctactaaa atttcatcaa
    26641 attcatattt ttcttctttt aaaagatctt ttagattgat aagcaagtca ttaaaatcca
    26701 cataattaaa acgctttttt tcattatcat attcttttaa aatatcttca taaatttcag
    26761 cataaatact ttgatcttca tagttttgac aaaaccaagt ataaaaatct tgattgtgtg
    26821 ctttgttttg aaacaaagaa taaagatcgt ataaataact tgattgataa ggttttatat
    26881 cacttaaatg cctaaaagtt cttttttcat agacactttt aagtagagtt tttaactcgc
    26941 ttgcttgctt taaggctata tttttatccg catttctaag taaggtataa gccgtactat
    27001 gaaaagttcc tgcaagtatt ttactggtaa tatttttatc aaaaaatttc cctaaacgcc
    27061 ctatcatttc tttgctggct ttatttgtga aagtcaaaag catgattttt tgaggtgcca
    27121 ctcccttgct taaaagataa gaaattcttg caacaatagt agaagttttt cccgtccctg
    27181 cacttgcaat aacaagattg tgtccaaaat cagcagtagc ggcaagatat tgttcattat
    27241 ttaattttga aagtggcatt attttcctta taaaagttaa aattataaaa aaaaattact
    27301 taaaaatata aaaatttaaa attactttat attagattat agtacaatgc taaaattatt
    27361 taactttcta tttttaaggg atagcaaatg aatttgaaaa ttttttctat tattgttagc
    27421 atattaattg ctgttattgt aatattaggt ggaacctatt attatctttt tgaatattca
    27481 aaaccaaaga attacacctt aaataccaac acttacaccg aacaaaaatc gtataccaat
    27541 aactacgata atccctattc accctcgatc caaaccaaca atagttcatc aaatgtaaat
    27601 actaacaaca ataccatcca aaagcaagaa acaaacccat tattagatga aaatcaaagc
    27661 ttaaataatg acacatttaa tatatcaata agcgaaaaca atcaaagctt aaataatgac
    27721 accaatacaa gtaataatat taatacaaat gaaaataagc aaattttaga tacggataaa
    27781 gaaaaattaa aacaagaaaa taaacaagcc aaaatagaag ctcttaaaaa agaaatcagc
    27841 aaacaacaaa agatcttaga aagagaaaga gctataaaaa aagaacttca atcaaacaaa
    27901 tcaaacaaaa ataaatatct aaataccgct agagagtatc taagcatagg aaaaaacagt
    27961 cgtttagaac ctgagcttag cacagaaaat atgaaagttt atattttaga tggaaaattt
    28021 ttaagccaat acagaatcaa tctgttaaaa gatatgctaa gcattataca agataatgca
    28081 aaagattatt atctaagtat ttttgttaaa atgctaccaa aaggggaaat gaaattaact
    28141 atctataaca aagaaattat cttttcagat atgaaaaaag cttataaata tattagttta
    28201 gatagattaa gcccatattt aaacaatcca aaagaattaa atgaacatgt agcacgtgaa
    28261 gaaattttag aaagacttaa acttcaaatt aaaaaagatg gcaaaggaag tgatttttct
    28321 aaacatatca aaagtttgaa aactggactt aatacagcac aatatttctt cccgttttgt
    28381 gaaattatag aaattagctc tattaaataa gctaaaacaa taaaggcaaa taatgtatga
    28441 taaaaattta gaaaaagagt attatcaaat ttgcgaagaa cgcggatatt ttgaaatcga
    28501 tggcaataaa accatacaag aaaaagataa aaatttctgc attatgatgc ctcctcctaa
    28561 tgtcactgga gttttacaca taggacatgc tttaactttt actctacaag atattatgac
    28621 gcgttataaa agaatggatg gctataaggt tctttatcaa ccagggcttg atcacgcagg
    28681 tattgccact caaaatgttg tagaaaaaca actccttgct caaggcatta aaaaagaaga
    28741 actaggtaga gaggaattta tagaaaaagt ctgggagtgg aaagagcaaa gcggtggaaa
    28801 aattttagac caaatgagaa cactaggcat cactcctgca tggagtcgct tgcgttttac
    28861 tatggatgaa ggtttggtta atgccgtaaa aaaagccttt gtagaacttt atgataaaag
    28921 acttattgta cgtggaaact acatgataaa ttggtgtacc catgatggcg ctttaagtga
    28981 tatagaagtt gaatacaaag aaaacaaagg aaaactttat catattaaat actttttaaa
    29041 agatagcgat gaatttttag tagtagccac aacgcgtcct gaaacttttt ttggcgatac
    29101 tgcagttatg gtgcatcctg atgatgaacg ctatactaaa tttgtggaca aagaagtgat
    29161 tttgcctata agcaaaaaag ccattaaaat catagccgat aaacatgtag aaaaagattt
    29221 tggaacagga gttgtaaaag ttactcccgc tcatgacatg aacgattatg aagtaggact
    29281 tagacataat ttagatttta taagtgtttt tgatgaaaaa ggaattttaa acgagcattg
    29341 tttagagttt caaggtttag aacgcttaga agcaagagaa agaatcgtag ccaaacttaa
    29401 aagtcttggt tttatagaaa aaatagaaga gcataacaat caaataggat attgttatcg
    29461 ttgcaacaat atagttgaac cttatatctc caaacaatgg tttgtaaaaa aagaaatcgc
    29521 ccaagaaagt atagaaaaag ttgcgcttgg agaaagcaaa ttttacccaa atcactggat
    29581 aaatagcttt aatgcttgga tgaaagattt aagagattgg tgtatttcaa gacaactttg
    29641 gtgggggcat caaattcctg tgtattattg cgaatgctct catgaatggg caagccaaca
    29701 tacgcctaaa acttgtccaa aatgtcaaag tcaaaatttc aaacaagatg aagatgtact
    29761 tgatacttgg ttttcttcag gactttgggc tatgagtact ctaggctggg gaaatgaaaa
    29821 ttggggtaaa gataaaattt ggtctgaaaa ggatttaaaa gatttttacc ctaattcttt
    29881 actcattaca ggttttgata ttttattttt ctgggtggct agaatgatgt ttcaaagcac
    29941 caatgtctta catcaacttc cttttaagga tatttattta catgctcttg tgaaagatga
    30001 gcaaggtaga aaaatgagta aaagccttgg aaatgtcatc gatccaaatg aaagcattaa
    30061 agaatatagt gctgatattt tacgctttac tttagcactt cttgctatac aaggacgcga
    30121 tattaaactt agcaatgata aacttttaca agttagaaat tttacaaata aaatttataa
    30181 tgctacaaat tatctgcttt taaatgaaag taaatttgaa gatttggaaa atatcacact
    30241 tcattcagaa ttagcaaaat atatttatgc caaatttcaa acttgtgtta aggatgtaag
    30301 agaaaattta gacaattatc gctttaatga tgcagccaat actctatata aattcttttg
    30361 ggatgatttt tgcgattggg gtatagagct tagcaaagcc gaaaaatcga gcgttaaaga
    30421 acttggtagt attttcaaag aagctttaaa acttttaaat cctttcatgc cttttatcag
    30481 cgagtattta taccacaaac taagcgatac agaacttaaa acaagccctt ctattatgat
    30541 aagcaaatat ccaaaattta aagaacaaga taaaaatata gaaaaaatct tttctttgct
    30601 catagaaagc atagttagta tccgccgtgc taaaagttta atcgatcttg gaaattctaa
    30661 aatagaaaaa gcttatatca aatttaacga taaaaaaatc aaagatgaaa tcaaagctta
    30721 tatgaatttt atcataatgc tcgcaaagtg cgagcaaata gaatttagtg aagaaaaatt
    30781 accaaaggca atatgtgatg ttagcgagaa tttagaaatt tttattacgc ttgaaaatgt
    30841 tgatttaagt ggtattttaa caagacttga aaatcaaaaa aataagcttg aaaaagaaag
    30901 tttcaagctt aactccatgc tttcaaatga aaaattcatc gctaacgcac ctaaagaggt
    30961 ggtggagcaa aataaagaag ctctagaaaa tttaaaaatt caacttgaaa aaatatcagt
    31021 tgaacttcaa aatctaagag gttaaaaatt tgataaaaat aaaaaattta aaaaaatatt
    31081 atggcaagga actcgtgata aacgatgttt ctttggagat taaaaagggt gaaatttacg
    31141 ccatagtagg tcatagtgga gctggaaaat ccactctttt aagatgtatt aatggacttg
    31201 agaattatca agaaggaagt ttaaaagtct ttgatcaaga aattaaagat ttaagtcaaa
    31261 aaaaatcaaa agagttaaga atgcttagaa aagatatagg gatgattttt caaaattttg
    31321 ccctaatgga gcgcaaaaat gtatttgaaa atgttgctat gcctttaaga acacactata
    31381 ctcagtgtaa atttcatgcc aagcttttta ataaagaata catgagcgaa aaagaaattg
    31441 cccaaaaagt caattcctta cttgaaatcg tagggcttga tcataaaaac aaatcctacc
    31501 caagagaact gagcggaggg caaaaacaac gcgttgctat tgctagagcc ttagctttaa
    31561 acccaaaaat tttacttagt gacgaagcta cttcggctct tgatccaaac actacaaaaa
    31621 atattttaga gcttatatct aaaatcaatg ctgaatttgg gattactgtt gttttagtaa
    31681 ctcacgaaat ggatgtggta aaagacatag ctcaaaaagc tttattactt gaacatggac
    31741 aaatcatagg aagtggagca attgatgagc tttttttaag gcctaatgcc aaaatgaaag
    31801 aatttttagg agaaagcgac ttcttgcctg agcacggact taatatcaaa ctttactttc
    31861 caaaagaagt tgcccaaaat agcgtcatca ctcatatggc aagaactcta aatatagact
    31921 ttaacatagt ttggggtaaa atagaaaaac tgaatggaaa agccttggga aatttagtta
    31981 taaatataaa tgaaaaggat aaagacaagg ttcttgatta catagaaaaa agtggagtat
    32041 tatgggaggt ggcatcatga atgaagaaaa catctctatt gtcagtgctt tttttagtag
    32101 aatttctcaa ttttttaatg aattttcttg gcaggatatt aaagaagtga gtttaagttc
    32161 tatcacgagt ttcaatgaaa attatgaaaa cattttaaaa cctgcactta atgaaacaat
    32221 ttatatgagt ttaatggctg tactatttgg atttttattg gctatcattc ctggaatttt
    32281 acttgctatt tgggataaaa atggaattaa agaaaataaa atcgcttata gtattttaga
    32341 ttttattacc aatatattac gcgcctttcc atttttaatt cttatagttg ttcttttacc
    32401 actttctaaa atcatagtag gcacaagcat aggtacaaat gctgccatag ttcctttagc
    32461 tatcggaata gctccttatt tggcaaagat gcttgaaagc gcttttaaag aaatagacaa
    32521 aggaattata gaagcagcaa aaagttatgg tgctagcaat attcaaatta tcttcaaggt
    32581 tatctttagt gaagcccttc ctgctataat tagcggaatt accctaactt tgatctttac
    32641 cattggtttt tctgctcttg ctggaactgt cggtggtgga ggattaggag atgtagctat
    32701 tcgctatggt tatgaaagat ttaacaaaga agttatgatt caaactgtag ttattttact
    32761 tatattagtt caattagttc aaattctagg taatttattt tatacttggg ctaaaaatag
    32821 taaaactaca tatatcattg ccactctatt gattttactt ggagttagta tagttatcaa
    32881 tataaacaat gatgaaaatt tcttttggca agtaattgtt tttatcttat ttttaggaag
    32941 tttgctttat aaaggtttca aaaaataagg agattatatc tccttttaag ataaatataa
    33001 gtttttttaa gtaaaattta aaaaaaatta aaggaattaa aatgatgtat cagatgcgtt
    33061 aatctgacta tcaacaagtt tttatatgct tcttcctgat agtcagagtg aatttattaa
    33121 gattaaagca agcacaaaat gactaaaaag gaaaaaaatg aaaatcaaat ctttatttat
    33181 agcaagtatt ttaacattaa gtcttaatgc aaatgcatta gaaaccatca cagttgcagc
    33241 aactcccgtc cctcatgctg aaatcctaga acaagtaaaa cctgatttag aaaaacaagg
    33301 ctataaactt gaaatcaaag aatttacgga ttatgttttg cctaatctag ctgttgataa
    33361 cggagaagcc gatgcaaatt ttttccaaca tactccttat ttggaagaat ttaataaaaa
    33421 caaaggcacc aaacttatca aagtagctgc catacacata gaacctatgg ctgtttactc
    33481 caaaaaatac aaaagtctag atgatattaa agaaggggtt aaaatcgcca ttccaaatga
    33541 tccaaccaat gaaagtagag ctttagatat tattgcaaaa aaaggtttgg taaaatttaa
    33601 agataaggct ttaaaaacac ctcttgatat tatagacaat cctaaaaaaa ttaaatttgt
    33661 agaattaaag cccgcacaac ttccaagagc tttgaatgat gttgattttg ctgtaattaa
    33721 ttccaactac gctctctctg caaatctaaa tcctgcaaaa gatagcgtat ttatcgaaga
    33781 taaagaaagc ccgtatgcaa acattcttgt tgtaagagtg ggacatgaaa acgatccaaa
    33841 aatcaaagcc ttaatccaag ctctacaaag tgataaaatc aaacaattta tcatagaaaa
    33901 atacaacgga tctgttttac ctgcttttta attttgtccc ttacctaggg acttttttct
    33961 taagtacaaa ggagttttta tgaatttatt taaaattatt atactcgctt gcattctaaa
    34021 tttatctagc ctatttgcac aaaacattac tataggagcc actccaaatc cttttggtag
    34081 cttactagaa ctaatgaaag atgattttaa aaacaaaggg tatgatctta aaatagtaga
    34141 attttcagac tatattttgc ccaatcgtgc attagaggaa aaagaacttg atgcaaattt
    34201 atatcaacac aaaccttttt tagaagaata caacctaaaa aaaggttcaa atttaattgc
    34261 aacaacgcct gtacttatag ctccagtagg agtttatagt aaaaaaatca aaaatttaga
    34321 aaatcttaaa gaaggtgcta gagttgctat acctaatgat gcgaccaatg aaagcagagc
    34381 tttagagctt ttagagaaag caaaattaat agagcttaac aaaaatactc taaaaacccc
    34441 attggacata aacaaaaatc caaaaaaact taaatttata gaacttaaag ccgcacaact
    34501 tccaagagct ttagatgatg ttgatattgc tataattaat tctaatttcg cacttggagc
    34561 cggtctgaat ccaagtaaag atactatttt tagggaagat aaaaatagcc cttatgtaaa
    34621 ttatgttgtg gtacgctcag aaggtaaaaa tagcgaaaaa accaaagtaa ttgatgaaat
    34681 tttaagaagc gataaattta aagccatcat taatgaacat tataaagata tattaatccc
    34741 agctttttag gagtataata tgaatattaa aaaaatattt ttaagtgttt tatttacaat
    34801 tagccttagt tttggggcag ataaaaccat aatcataggt gcaacaccaa cgccttatgc
    34861 tgaaatttta aatttctcta aacccttgtt tcaagaaaaa ggttggaagt taatagttaa
    34921 ggaatttaat gactataata tacctaacat cgctttaaat gaaaaagatt tagatgcaaa
    34981 tttatatcag cataaacctt ttttagatga ttttaatacc cacaaaggaa caaaattaag
    35041 ttctttaggt gctattgttt tagttcctat ggctatatat tctaactcca taaaaaatat
    35101 aaaagacatt cctaatggtg ctaaaatcgc tatacctaat gatgctacca atgaaagcag
    35161 agctcttgat ttactagcta aagcaaattt aatagagttt aaaagtcaaa gcacccttaa
    35221 aacccctatt gacataagta aaaatccaaa aaaacttaaa tttatagagc ttaaagccgc
    35281 acaacttcca agagccctaa atgatactga tttggctatt attaccacaa actatgctct
    35341 tggagcaggc ttaaaccctt taaaagatgg tatttttatg gaagataaag atagtttata
    35401 tgctattgtt ttagctacaa gaaaaggtga agaaacaagt caaaaaagtc ttgttattaa
    35461 agaaatttta acaagcgata aaattaaaaa ttttatcata gaaaaataca aaggctctgt
    35521 tatccctact ttttaactct atacaaagcc ttctaaaggc tttgttaaac ttataaaagc
    35581 taaaatacta t
//
LOCUS       DARBBO010000004        34844 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.004, whole genome shotgun sequence.
ACCESSION   DARBBO010000004 DARBBO010000000
VERSION     DARBBO010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 34844)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34844)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34844
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.004"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..257
                     /locus_tag="SB854_000114"
     CDS             <1..257
                     /locus_tag="SB854_000114"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEG0956166.1"
                     /translation="LERQKAFKENIFVGIVYSKEKLSQENLKDLEVKLNKKFDANIKL
                     NNKISQDDSVKIELEELGYELSFSMKALQNKLNEYILKII"
     gene            271..1776
                     /gene="atpA"
                     /locus_tag="SB854_000115"
     CDS             271..1776
                     /gene="atpA"
                     /locus_tag="SB854_000115"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEG0956167.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIKEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            1785..2669
                     /locus_tag="SB854_000116"
     CDS             1785..2669
                     /locus_tag="SB854_000116"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEG0956168.1"
                     /translation="MSNLKEIKRKIKSVHNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISFQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLKDLMKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            2695..4092
                     /gene="atpD"
                     /locus_tag="SB854_000117"
     CDS             2695..4092
                     /gene="atpD"
                     /locus_tag="SB854_000117"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEG0956169.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            4096..4485
                     /locus_tag="SB854_000118"
     CDS             4096..4485
                     /locus_tag="SB854_000118"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEG0956170.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            4485..5039
                     /locus_tag="SB854_000119"
     CDS             4485..5039
                     /locus_tag="SB854_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG0956171.1"
                     /translation="MNFEAIFHFFNSSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            5048..5437
                     /locus_tag="SB854_000120"
     CDS             5048..5437
                     /locus_tag="SB854_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HEG0956172.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSTPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            5440..6219
                     /locus_tag="SB854_000121"
     CDS             5440..6219
                     /locus_tag="SB854_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HEG0956173.1"
                     /translation="MKNYGLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQIDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGISSAPKPQASELVKQLNDSLLQEESSTQGESTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEVKVKND"
     gene            6229..7437
                     /gene="tolB"
                     /locus_tag="SB854_000122"
     CDS             6229..7437
                     /gene="tolB"
                     /locus_tag="SB854_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HEG0956174.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYIFEYTLNKNGNTLSLNVKIKAGGSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLAPVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVNVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGAQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            7514..8011
                     /gene="pal"
                     /locus_tag="SB854_000123"
     CDS             7514..8011
                     /gene="pal"
                     /locus_tag="SB854_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HEG0956175.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKIYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            8015..8962
                     /locus_tag="SB854_000124"
     CDS             8015..8962
                     /locus_tag="SB854_000124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEG0956176.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            8977..9546
                     /locus_tag="SB854_000125"
     CDS             8977..9546
                     /locus_tag="SB854_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG0956177.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGGGGCCGGGGCGCH"
     gene            9546..10466
                     /gene="fabD"
                     /locus_tag="SB854_000126"
     CDS             9546..10466
                     /gene="fabD"
                     /locus_tag="SB854_000126"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEG0956178.1"
                     /translation="MNAAFIFPGQGSQSLGMGKDFYENSIKAKELLQNASDFCKIDFK
                     HLLFEENEKLNQSEFTQPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNG
                     AFDFLEALSLVNKRGLFMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAAN
                     YNCDGQIVVAGLKPDLASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEK
                     VLKPNFKAVISNANAKIYTSKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGAS
                     VLKGLNKKITSKETYALTNMNDIDEFLKVV"
     gene            10463..11152
                     /gene="pfs"
                     /locus_tag="SB854_000127"
     CDS             10463..11152
                     /gene="pfs"
                     /locus_tag="SB854_000127"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HEG0956179.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQALLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            11149..11904
                     /locus_tag="SB854_000128"
     CDS             11149..11904
                     /locus_tag="SB854_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HEG0956180.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGITVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKDHPKLFTSLKTAFANLHTESFWLQKA"
     gene            11909..12430
                     /locus_tag="SB854_000129"
     CDS             11909..12430
                     /locus_tag="SB854_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase family protein"
                     /protein_id="HEG0956181.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            12430..13044
                     /gene="recO"
                     /locus_tag="SB854_000130"
     CDS             12430..13044
                     /gene="recO"
                     /locus_tag="SB854_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HEG0956182.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLDECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            13041..13448
                     /gene="ybeY"
                     /locus_tag="SB854_000131"
     CDS             13041..13448
                     /gene="ybeY"
                     /locus_tag="SB854_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEG0956183.1"
                     /translation="MILSDEKCDFLESIASFLSPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEHFNLPKSLIVRTLED"
     gene            13572..14261
                     /locus_tag="SB854_000132"
     CDS             13572..14261
                     /locus_tag="SB854_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956184.1"
                     /translation="MIVFPLSSFNRYFGNNPLQTLTKIRDESIENGNPELTKKQREEL
                     GNDLIDLYKISKKFSDKIELVEGSIEDKLRNNELPESEVKNLFQWMDENAKHPRWMHI
                     DGVSYDEAYVKIFHTSKSIDEFKEKYLELQKKYFVDFNNIDSSQKKLQETSEEDKKAF
                     KPIQVESKSETYKDDNKMNELLRKLLETKFGTSDELEILFGMNFSNDNAGEFNKILSQ
                     NTSAKIIDIKA"
     gene            complement(14286..15212)
                     /locus_tag="SB854_000133"
     CDS             complement(14286..15212)
                     /locus_tag="SB854_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-dihydrouridine synthase"
                     /protein_id="HEG0956185.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFISIHGRTRKQLYSGKADYGSIASAKASVKIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASTFRDTVNRIDNVEEMRKKIEEFFSLT"
     gene            complement(15209..16195)
                     /locus_tag="SB854_000134"
     CDS             complement(15209..16195)
                     /locus_tag="SB854_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956186.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRSVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNILSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAYLYLLAEFGLLDELREQIHNDDKKFNDFKAFLALREKNIKIDLNQLIQ"
     gene            complement(16185..16547)
                     /gene="dksA"
                     /locus_tag="SB854_000135"
     CDS             complement(16185..16547)
                     /gene="dksA"
                     /locus_tag="SB854_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HEG0956187.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(16559..17008)
                     /locus_tag="SB854_000136"
     CDS             complement(16559..17008)
                     /locus_tag="SB854_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEG0956188.1"
                     /translation="MQVNIFCIQKSDEFKTCSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(17010..17852)
                     /locus_tag="SB854_000137"
     CDS             complement(17010..17852)
                     /locus_tag="SB854_000137"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEG0956189.1"
                     /translation="MNFADIFSKIRRQQPSVKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINGLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTSLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTDPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(17861..18583)
                     /locus_tag="SB854_000138"
     CDS             complement(17861..18583)
                     /locus_tag="SB854_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase"
                     /protein_id="HEG0956190.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFNNKQAFKSNLSDPKYSPLTPNLFSKIGIVEKISLYPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(18583..20802)
                     /gene="bamA"
                     /locus_tag="SB854_000139"
     CDS             complement(18583..20802)
                     /gene="bamA"
                     /locus_tag="SB854_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HEG0956191.1"
                     /translation="MKKHLISICALVAMANAATIKDIKFIGLNHLSNTSAINIAGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVTITGIASNDRK
                     QVESILGIKRGTLLDEGNIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLVNPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITIGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNDTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEIGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            20879..21706
                     /locus_tag="SB854_000140"
     CDS             20879..21706
                     /locus_tag="SB854_000140"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEG0956192.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALQL
                     GLIHELIEFKDLALCDMIFVATPVDAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            21786..23159
                     /locus_tag="SB854_000141"
     CDS             21786..23159
                     /locus_tag="SB854_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG0956193.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHIKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKADDANLDKVYIETNKGKIFKATPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEKLIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWIENNIYNVLNDGK
                     KIILGKN"
     gene            23159..24043
                     /locus_tag="SB854_000142"
     CDS             23159..24043
                     /locus_tag="SB854_000142"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HEG0956194.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDERGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPIEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYTSYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            24082..24483
                     /locus_tag="SB854_000143"
     CDS             24082..24483
                     /locus_tag="SB854_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HEG0956195.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVSLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            24492..25370
                     /locus_tag="SB854_000144"
     CDS             24492..25370
                     /locus_tag="SB854_000144"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEG0956196.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            25395..25652
                     /locus_tag="SB854_000145"
     CDS             25395..25652
                     /locus_tag="SB854_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEG0956197.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            25639..28254
                     /gene="infB"
                     /locus_tag="SB854_000146"
     CDS             25639..28254
                     /gene="infB"
                     /locus_tag="SB854_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEG0956198.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKIEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPSK
                     KIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGS
                     YEFVGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERS
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCM
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            28251..28613
                     /gene="rbfA"
                     /locus_tag="SB854_000147"
     CDS             28251..28613
                     /gene="rbfA"
                     /locus_tag="SB854_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEG0956199.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            28603..29025
                     /gene="rimP"
                     /locus_tag="SB854_000148"
     CDS             28603..29025
                     /gene="rimP"
                     /locus_tag="SB854_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEG0956200.1"
                     /translation="MNLEALCKEAELSFYDDELVSENGKKIYRIYVQKEGGVNLDDCA
                     KLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELAKITTNEKEKIE
                     AKIIAVDDENITLENLENKEKTTINFNDIKKARTFIQW"
     gene            29081..30856
                     /locus_tag="SB854_000149"
     CDS             29081..30856
                     /locus_tag="SB854_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG0956201.1"
                     /translation="MLENKCDWKISKADQNGNVYYYFPKDEDEFKEAVVKNGGMSVYV
                     YQEGKFIDEFHTKSQGDKWTSSILNYLKTMSKDGEIFYRYYKNCKFFAIPKNTFSKDD
                     FKIIKDNINNNISLNQILYGSPGTGKTYHTIDKALEILGENLESRDEKKAKFDEYVKN
                     GQIVFTTFHQSYGYEEFVEGIKPSLNSDENSQINYKVKDGIFKELCKKALENRDDIES
                     FNFYINDLKEKTKEDANNPEKYFQLPNTKYSIQYRGGKTFRIKFDDMSKNHKDYPVSI
                     DNIEKLYKTSNIDEIYNSAYVKAILNYLKSQGLKDYKEKDEKINLPYIIIIDEINRGN
                     VSKIFGELITLIEPSKRLGNEEALELTLPYSGEKFGVPKNVYIIGTMNTADRSITSLD
                     TALRRRFEFVEMMPNSDLLNNVFICKDVENPNEDEDYLGDDAKTEGYAEILQNILISI
                     NKRIEFLLDREKTIGHAFFMSEAVKFNKNNWIKPDEYEEDWYVLSISKLKKVFQNKII
                     PLLQEYFYNDYALINAVLNDNGMIFEDKKDDKYLQKIKNLDSVNSERSIYNIASFDDK
                     IWDKIEIYQAIYNDEIANKLKNENE"
     gene            30849..32180
                     /locus_tag="SB854_000150"
     CDS             30849..32180
                     /locus_tag="SB854_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HEG0956202.1"
                     /translation="MNSIFSIIEYQAFSKEDLKEIFKEKAEGFYKELEDFAKNNENLL
                     GFKNKNSLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLRRCYELDN
                     ISKNNDFYEKDFKFNPKNLLINMLKTLKNSPFKKSQISSLQSSKIPLFEVFITMFLDE
                     FDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKRNLIHKERFFTSNDEFVLDIAPNR
                     LIKSTLNFLKSKTSLNKFRLIKSMQILDEVEFSKNYEKDFSYKISRHFDYYENLLLWC
                     KIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPAQDIKVQNNGKYLISK
                     NDENCFMLKPDLYIENKMILDTKWKIPNDSEDEKKQGIEQSDLYQMFAYACKFKIYDI
                     KLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVCFAPLPF"
     gene            complement(32169..32972)
                     /locus_tag="SB854_000151"
     CDS             complement(32169..32972)
                     /locus_tag="SB854_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEG0956203.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKRYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKKLGFI
                     MVLASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLMHLIGKFLKR"
     gene            complement(32965..33819)
                     /locus_tag="SB854_000152"
     CDS             complement(32965..33819)
                     /locus_tag="SB854_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEG0956204.1"
                     /translation="MLFFEISNLNYAYNNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQKKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEKNCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            complement(33832..34722)
                     /locus_tag="SB854_000153"
     CDS             complement(33832..34722)
                     /locus_tag="SB854_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEG0956205.1"
                     /translation="MKKIILFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     VKKIAANTLDINVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FPKLQVVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTL
                     IQKYPQNENLYKENLDKFLAELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLT
                     QIPVEILGKEPKSKDLQKLITLMKNKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDH
                     LSYDWENELLKTADAFSHNL"
BASE COUNT        12614 a         4519 c         6103 g        11608 t
ORIGIN      
        1 aacttgaaag acaaaaagct tttaaagaaa atatttttgt tggtattgta tattctaaag
       61 aaaaattaag tcaagaaaat cttaaagatc ttgaagtcaa acttaacaaa aaatttgatg
      121 caaatattaa actaaataat aaaatcagtc aagatgatag tgttaaaata gaattagaag
      181 aattaggtta tgaactttct ttttctatga aagctcttca aaataagcta aacgaatata
      241 tattgaaaat tatctaagga gaaaaagtaa atgaaattta aagctgatga gatcagttca
      301 ataatcaaag aaagaattga aaattttgat ttaaatcttg aaattgaaga aacaggaaag
      361 attatttctg tagctgatgg tgttgctaag gtatatggac ttaagaatat tatggctgga
      421 gaaatggtag aatttgaaaa tggtgataaa ggaatggcct taaaccttga agagtcgagt
      481 gtaggtattg ttatacttgg aaaaggagaa ggtttaaaag aaggtgcttc tgtaaaaaga
      541 cttaagaaat tacttaaagt tccagtaggt gaggctttga ttggccgtgt tgtaaatgct
      601 ttaggtgagc caattgatgc taaaggtgtg atcaatgcta atgaatatcg ttttgttgaa
      661 gaaaaagcaa aaggtattat ggcgagaaaa agtgttcatg agcctttaca tacaggaatt
      721 aaagctattg atgcgcttgt gccaattggt cgtggtcaaa gagagcttat cataggtgat
      781 agacaaacag gtaaaactac tgttgctgtt gatactatta tatctcaaag aggtcaagga
      841 gttatctgta tatatgttgc aattggtcaa aagcaaagta cagtggcaca agtggttaaa
      901 agactagaag aacatggtgc tatggaatat actattgttg taaatgccgg tgcttcagat
      961 cctgcggctt tacagtactt agctccatat actggtgtaa ccatgggtga attttttaga
     1021 gacaacgcaa aacatgcttt aattgtttat gatgatttga gcaagcatgc tgtagcttat
     1081 cgcgaaatgt ctttgatttt acgtcgtcct ccaggtcgtg aagcttatcc aggtgatgtt
     1141 ttttaccttc attcaagatt gcttgaaaga gcaagcaagc taaatgatga attaggtgct
     1201 ggttctttga cggcattgcc gataattgaa acacaagcag gagatgtttc tgcttatatt
     1261 ccaactaatg ttatttcaat tacagatgga caaattttct tagaaactga tttatttaac
     1321 tcaggaattc gtcctgcaat taatgttggt ttatcagtat ctcgtgtagg tggggctgct
     1381 caaattaaag ctacaaaaca agtttcaggc acattaagac ttgaccttgc tcaatataga
     1441 gagcttcaag cttttgcaca atttgctagt gatttagatg aggcaagtag aaaacaactt
     1501 gaacgtggac aaagaatggt tgaactttta aaacaaccac cttattctcc gcttagcgtt
     1561 gaaaaacaag tagttttaat ttttgcagga accaaaggtt tcttagatga tattgctgtt
     1621 tctagaatta aggaatttga agatggaatt tatcctttta ttgaggcaaa acatccagat
     1681 atttttgagc aaattcgctc taaaaaagct ttagattctg atttggaaga aaaactagct
     1741 aaagccatta atgagtttaa agcaaatcat ttataaggtc ttttatgtct aatttaaaag
     1801 aaattaaaag aaaaattaaa agtgttcata acactcaaaa gactacaaat gctatgaagc
     1861 tagtttctac tgctaagtta aaaaaagcag aagaagcagc taaaagatca aaaatttatg
     1921 cacaaaaaat cgatgaaatt ttgagtgaaa tttcatttca gatcaataaa attgttcaca
     1981 atgaagatga tgtgcgttta tctttgtttc ataaaaaaga acaaattaaa accgtagatt
     2041 taatatttat cactgcagat aaaggcttat gcggtggttt taatattaag actttaaaaa
     2101 cagtaagtga aatgctaaaa gaatatgaag caaaaaatat taatattcgt cttagagcta
     2161 taggtaaaac tgggattgaa tattttaatt ttcaaaaaat agaattgtta gagaaatatt
     2221 tccatcttag ttctagtcct gattatgaga aagcatgtga agtaattcat gctgctgtag
     2281 atgatttttt aaatggaaat acagatgaag tgattttagt tcataatggt tataaaaata
     2341 tgattaccca agaacttaaa attaatcatc ttattccagt tgagccaaag agtattgaac
     2401 agactcataa ttctctttta gagcttgaac cggaaggaac tgagctttta aaagatttaa
     2461 tgaaaacgta ttttgagtat aatatgtatt atgcgttaat cgattctttg gcggcagagc
     2521 atagcgcaag aatgcaagct atggataatg caactaataa cgcaaaggca agagtgaaac
     2581 aactaaattt agcttataac aaagcaagac aagaatccat tactactgag cttatagaga
     2641 ttatcagtgg tgttgaatca atgaaatagt aaaattttaa ggagaagata aataatgcaa
     2701 ggatttattt cacaggtatt aggtccggtt gttgatgtag attttaacga ctatttgcct
     2761 caaattaatg aagcaattgt tgtaaatttt gaaagcgaag gaaaaaaaca taaacttgtt
     2821 ttagaagtag cagctcattt aggagataat agagttagaa ctattgctat ggatatgaca
     2881 gatggtttgg taaggggctt aaaagctgag gctttaggtg ctcccattag tgttcctgtt
     2941 ggtgagaaag ttttaggaag aattttcaat gttactggag atttgatcga tgaaggtgaa
     3001 gaaatttctt ttgataaaaa atgggcaatt catagagatc caccagcttt tgaagatcaa
     3061 agcacaaaaa gtgagatttt tgaaacaggg attaaagttg tagatttact tgctccttat
     3121 gcaaaaggtg gtaaagtagg tctttttggt ggtgcaggtg ttggtaaaac tgttattatt
     3181 atggagctta ttcacaatgt tgcatttaag catagcggct attctgtatt tgcaggtgtg
     3241 ggtgagagaa ctcgtgaagg aaatgacctt tataatgaaa tgaaagaaag taatgtttta
     3301 gacaaagttg ctctatgtta tggacaaatg aatgaaccac caggggcaag aaatcgtatt
     3361 gctttaacag gtttaacaat ggctgagtat tttagagatg aaatgggtct tgatgtgctt
     3421 atgtttattg ataatatctt tagattttca caatcaggtt ctgaaatgtc agcactttta
     3481 ggaagaattc catcagctgt gggttatcaa ccaaccttag caagtgaaat gggtaaattc
     3541 caagaaagaa ttacttcaac taaaaaaggc tcaatcactt cagttcaagc tgtttacgtt
     3601 ccagctgatg acttaacaga cccagctcca gcaactgttt ttgctcactt agatgctaca
     3661 acggttttaa atagagctat tgctgaaaag ggtatttatc ctgcagttga cccacttgac
     3721 tcaacttcaa gaatgcttga cccaaatatc attggagaag aacattataa agttgctcgt
     3781 ggtgttcaat cagtgcttca aaaatacaaa gatttacaag atatcatcgc cattttaggt
     3841 atggatgagc ttagcgaaga ggataaactt gtagttgaaa gagcaagaaa gattgaaaaa
     3901 ttcttatcac aaccattttt cgttgcagaa gttttcacag gtagcccagg aaaatatata
     3961 agccttgaag atacaatagc aggatttaag ggaattttag aaggtaaata tgatcattta
     4021 ccagaaaatg ctttctatat ggttggaaat atagatgaag ctattgcaaa agcggataaa
     4081 ttaaaaggtt aatttatgaa cgatttgatt aatttcgaga tagttacgcc tttgggtgta
     4141 atctatcaag gagaagtaaa atctgttact ttaccgggta gtgaaggaga atttggcgtg
     4201 cttaaaggac atgctgcttt ggtttcttct ttaaaatctg gagtaattga tattgaaaaa
     4261 gctgatttaa accatgaatt aattgctatt gatgctggac atgcaaaggt agatgaagat
     4321 aagatttgcg tgttagcaaa gggtgcggtt tgggtttgtg gaagtgatga aagtgagatt
     4381 gaaaaaaatc ttgctcaagc aaaagatttg attaaatcta tgagttctga taatgcagct
     4441 ttagcagcaa ctttttcaaa acttgataat gcaaggatgc attaatgaat tttgaagcta
     4501 tatttcattt tttcaatagt tcaagtatta ttacttatat agttttatta tggctttctt
     4561 tatattttat tttagcattt agtattttgt ttgctagatt gacttatttg gctacatgga
     4621 gaaataaaga aaaagaaagt ttagaaactt tgctcttggg tgagaaggat ttaagtcgta
     4681 ctgattcgat tttaagaaaa tgtaatgata caacttcaaa tcatttagaa atctataaaa
     4741 atttagcaag tcgccgcgct tctgctggac ttacttggct tagtattatt gcttcaactt
     4801 caccttttat aggtcttttt gggacagtta tttctatact tgaaactttt ggtgggcttg
     4861 gaactcaaaa ttctttaagt atcatagctc ctaaaatcag cgaggcttta gttgctacag
     4921 gttgtggtat tttagtagca attcctgctt atacatttca tctcatcatt aaaagaaaag
     4981 cttttgaact tttaagcatt attgatagcg agattaaagt tataagttcg agtaaataag
     5041 gttaaaaatg ccatttgatg atgaaaaacc tgaacttaat atcacacctt tagtagatat
     5101 tatgcttgta ttgcttgcga ttttaatggt aacagctcca agcattactt atgaagaaaa
     5161 aattaatctt ccacaaggta gtcaaaaaaa taccagcact ccaactgtta agagtttaat
     5221 tattagtatt aatgcaaaaa aagaaatttt tttaaatcaa gaaaaatacg attttataag
     5281 ttttgctgac aatcttgctc aaagaaaagc acaatttaat accgaagatc cggtttttat
     5341 acgcgctgat aaaagcttaa aatatgacga tgttatttca gtcttaagaa gtgtaaaaaa
     5401 tttaggattt aataaagttg ctttacagac tgaataatca tgaaaaatta tggtttgagt
     5461 aatttaaatt cgtttttact tgctttagca atatatatta gtatagtaat tcttgttttt
     5521 tttagacttg taagcgaggt tgaacctgct atacaatata ctgatataaa agatagtttt
     5581 gtagatattg aacttgctga accatcaaaa caagttatta ctcaaagcaa cactcctaaa
     5641 gaaatacaaa aaccaacaga gcaaattgat atagaaaagc tttttgctca gactacaaat
     5701 aaaacagtta aaactgaaga tattgaccaa aaggcaagta attttaatga gctttttgga
     5761 aatattaaag aaatacaaga agaaaagact acaaaaattc aatcaagtgc taaatcagga
     5821 atttctagtg ccccaaaacc tcaagcttct gaacttgtaa aacaacttaa tgatagttta
     5881 cttcaagaag aaagttcaac gcaaggcgaa agcacaaagg cgcaaaagat tggaatttat
     5941 gatgaatttt tagggaaagt tgtgcgtatt atcactcaaa gatggactca gtattatcca
     6001 aatagtgaaa aaatttctgt taaggtaaaa atttttattg atgaaaatgg aaaatttggc
     6061 tatacttcag ttgaaaaaag tgggaatcct ttatatgatg ctaaagtggc tgaattttta
     6121 gaaagtcaaa aaggtaaatt tattacttat cctccgcaaa ataaaaatat aagcattacc
     6181 atgaatttaa gagatgaagt aaaagttaaa aatgattagg agaaaaaaat gaaaaaaatt
     6241 gtagcaattt ttttagtctt tttaggaagt ctttgggcag aagatccagt gattgatgtt
     6301 gttaattctg gtgtagtttt accaaagatt attgttaaag acaattcaaa tttaagtgat
     6361 gagaatttaa agaaaagctt ttataatatc attgtgaacg atttgaaagt aagttcaaac
     6421 tttgaagttg ttgctaatgc aactgagaca agtaattata tttttgaata cactttaaat
     6481 aaaaatggta acactttgag tttaaatgta aaaataaaag ctggcggttc tgataagtca
     6541 gagcaaactt atactttaaa tggtttagag caatatccat ttttggcaca taaaagtgtc
     6601 aaagcttctg taaatgcgtt aggacttgca cctgttgatt ggatggatca taaaattttg
     6661 atcgcgagaa attctagctc taaaaaaagt caaattatta tggctgatta tactttaact
     6721 tatcaaaaag ttattgttga tggtggactt aatttatttc caaaatgggg aaataaagaa
     6781 caaactctat tttattatac agcttatgat catgataagc caactttata ccgttatgat
     6841 ttaaatacca ataaagctag taaaatttta tcaagtggcg gtatggttgt agcaagtgat
     6901 gtgaatgtag atggaagtaa actacttgtt accatggctc caaaagatca gcctgatgtt
     6961 tatttatatg acttaaatac caaaaatcta acacaattaa ctaattattc tggtattgat
     7021 gttaatggaa attttattgg ctcagatgat agtaaagtgg tatttgtaag cgatcgttta
     7081 ggatatccta atatttttat gcaagattta aatagcaata gtgctgaaca agttgttttt
     7141 catggtagaa acaattcggc tgtttcgact tataaagatt ttttggttta ttcaagtcgt
     7201 gaaccaaatc aagcaggtgt ttttaatatt tatttgatgt caattaatag tgattatatt
     7261 cgtcaactta cagcaaatgg aaaaaattta tttccaagat tttctagtga tggtggaagt
     7321 atagtattta tcaaatattt aggtgcgcaa agtgctttgg gtgttattcg tgtaaatgca
     7381 aataagactt tttattttcc tcttagggtt ggaaaaattc aatcaattga ttggtaaaaa
     7441 tttcaatttt aggttaaaat taattaaaaa ttagatataa taataagaat ttattaactt
     7501 tgaaaggtca taaatgaaaa aaattctttt tacttcaatc gcagctcttg cagttgttat
     7561 tagtggttgt agcacaaaaa gcactagcgt aagcggtgat agtagtgttg attcaaatcg
     7621 tggttcaggt ggaagtgatg gttgggatat tgattcaaaa atttctcaac ttaatgatac
     7681 tttaaataaa atatattttg attttgataa attcaacatt cgtcctgata tgcaaaatgt
     7741 tgtaagcaca aatgctaata tttttaacac tgaagtaagc ggtgtaagta ttactgttga
     7801 aggaaactgc gatgagtggg gaaccgatga atataaccaa gctctaggtt taaaaagagc
     7861 aaaagctgta aaagaagctt taatcgctaa aggtgtaaat gctgatagaa ttgctgttaa
     7921 aagctatgga gaaacaaatc ctgtgtgcac tgaaaaaact aaagcttgcg atgcgcaaaa
     7981 tagacgtgct gaatttaaat tatcaagata attaatgaaa aaaatattca cagtagctct
     8041 tcttggagct actttacttt atgcagaaag ctcagctttt ggtgcaggag atataacaag
     8101 caattcttct tatggtttaa cttcaaatga aaaattattt aaagaaaagt tagataattt
     8161 aaataatgaa aatatacaaa caaatgctag aattaatgaa attaacgaaa gaatcgaggg
     8221 tttacaaagc actttagaag gtataaattc tcaatatgcc aaatcaaatt ctagattaag
     8281 tcaagttgaa gagaataatc aaaatattga aaataatttt actagtgaaa ttcaaaaatt
     8341 aaaggcttat gttgaagaaa gtagaaaaat tcaagaagct aataataagc aagtaaaaaa
     8401 agttttagcc gaacttagtt ctttagtaga tgctattaat gcaaattatg tttctaaaaa
     8461 cgaattaaat gatgcaaatt taagcgttaa aactattaca cctagtgttg ttgtttcaac
     8521 tacagattca aatagtacca ttgaaaacaa taatactcaa aatacccaag atgataaagc
     8581 aaaacaaatt gatgaatctt ggaaaaagaa aaaaaataat gaaattttag aattagcgat
     8641 aaaagatgtt gataaaaatg cttttgaaga ttccaaagca aaattaaatt ttctcataac
     8701 aaagcagtat aaacctgcaa gagcaaattt ttggttaggg gagatcgagt ataaacaaaa
     8761 aaattataac aatgctattg tttattataa aaaaagttct tctttgagta caaaaggaga
     8821 ttatttccca aaacttttat atcatactgc catttcattg gataaaacag gtgatacaaa
     8881 aacagcaaat ggtttttata aagctttaaa aactaattat ccaaattcac ccgaagcaaa
     8941 agcttcacct aatagaaaat aaattaagga gataaaatgg ctatagaaaa aaatagtgta
     9001 gtttcaatgt tttatgagtt aaaagatgca aatacaaatg aagttttaga atcaaattta
     9061 tattctcaac ctatttcttt tattttaggc aaaggtcaga ttttagaaag cttagaagaa
     9121 gaagtgatga agcttgattg ccctagcaat gctgatgtgg taattaaaaa agaaaaaggt
     9181 ttaggcgaat acgatgaaaa tgccgttcaa actttaccaa aagagcaatt tgcaggtatt
     9241 gatttaaaag taggtatgga gctttttggc gaaggtgaaa atggcgaaac cgttcgtgta
     9301 actgtaaaag aaattggtga aaatgatgtg acaattgatt ataatcatcc ttatgcaggt
     9361 cgtgatttgc ttttttcttt aaatatcgta gatgctagag ctgcgagtga agatgaaatt
     9421 cttacaggta ttatcgcagg aagtcatagt tgtggttgtg gaagcggaca tggacacgat
     9481 catcatcacg gacatggaca tggtggcggc ggttgctgtg gtggcggcgg ttgcggttgt
     9541 cattaatgaa tgctgcgttt atatttccag gtcaaggctc tcaaagtctt ggcatgggaa
     9601 aagattttta tgaaaactct ataaaagcca aagaactcct tcaaaacgca agtgattttt
     9661 gtaagattga ttttaaacat ttgctttttg aagaaaacga aaaactcaat caaagtgaat
     9721 ttactcaacc cgccatcgtt ttaaattcct taatggctta tagtgtttta cttgaaaaaa
     9781 aacctgattt aagttcgaaa tttgctttag ggcattcttt gggagaattt tcagccttag
     9841 ctgtcaatgg tgcttttgat tttttagagg ctctttcttt ggtcaataaa agagggcttt
     9901 tcatgcaaga agattgtgca aaagttgaag caggtatgat ggtggttttg gggcttgatg
     9961 atgaaaaggt tgaagagctt tgtcaaaaag cacaaaaaga aaacaagcaa attttcgctg
    10021 caaattataa ctgcgatgga caaatcgttg tagcaggttt aaaacctgat ttagcaagtt
    10081 atgaaagtgt atttaaagaa gcaggagcta aaagagctat gcttttaaat atgagcgtgg
    10141 caagtcattg tcctcttttg gaaaatgctt cagctaagct ttgtgtggag cttgaaaagg
    10201 tgttaaaacc aaattttaaa gccgtaattt ctaatgcaaa tgccaaaatt tatacaagca
    10261 aagaagaagc ccttgagctt ttaaaagcac aacttatctc tcctgtgctt tataaacaaa
    10321 gcattaaggc atgtgaaaat gaagtagatt atttcataga atttggcgca agtgtgctta
    10381 agggtttgaa taaaaaaatc acttcaaaag aaacttatgc tttaacaaat atgaatgata
    10441 ttgatgaatt tttaaaggtt gtatgatgaa aatagcaatt ttaggagcca tgagtgaaga
    10501 aatcactcct ttgcttgaaa cacttaaaga ttatacgaaa atagaacacg ctaacaatac
    10561 ttattatttt gcaaagtata aaaaccatga acttgtttta gcgtattcta aaattggcaa
    10621 ggtaaattct actcttagtg ctagtgtgat gatagaaaaa tttggcgcac aagctttgct
    10681 ttttacagga gttgcaggtg cttttaatcc tgaacttgaa attggcgatt tgctttatgc
    10741 aacaaaatta gctcaatacg atcttgatat tactgctttt ggacatcctt tgggttttgt
    10801 tccaggtaat gaaattttta tcaaaaccga tgagaaatta aacaatcttg ctttagaagt
    10861 tgctaaggaa ttaaatatca aacttcgtgc aggcattatt gcaacgggtg atgagtttat
    10921 ttgcgatgaa gcaaaaaaag caaaaattag agaaattttc aatgcggatg cttgtgaaat
    10981 ggaaggcgca agtgtggctt tggtttgtga tgctttaaag gtgccttgtt ttatcttaag
    11041 agctatgagt gataaagcag gggaaaaggc tgaatttgat tttgatgagt ttgtgatcaa
    11101 ttcagctaaa atttcagcca attttgtgct taaaatgtgc gagaaattat gataaatctt
    11161 agcaaaaaac tcatacgcca agttgcacaa gctaatgcta aatttggact tattaaagat
    11221 ggagataggg ttcttttagg gcttagtggc gggaaagatt ctttggcttt agcccatctt
    11281 ttaaatcgta tgcaagctca cgctcctttt aaatttgaac ttgaagcggt aactttgagt
    11341 tatggtatgg gcgaggatta ttctcatctt catgcacatt gtgaagaaca cggcattaaa
    11401 catagcgtgc ttgattcaaa tatttatgaa gtttcaggcg ataccataag agaaaattca
    11461 agtttttgta gttatttttc gagaatgcgt cgtggagctt tatatactta cgctcttgaa
    11521 aaaggtttta acaagcttgc tatagctcat catttagatg atgcagcaga aagctttttt
    11581 atgaatttta ttcataatgg agctttaaga accttagcac ctatttatca aagcaaacgc
    11641 ggtataactg tgatacgccc tttgattttt gtgcgtgaaa gacagcttag agataatgct
    11701 acgcaaaatg aacttagcgt gataggaaat gaattttgtc ctggtatgaa actcagtgaa
    11761 aaaaatgtaa aatttccaca cgctagagaa gaagctaaac agcttttagc aaatttagaa
    11821 aaagatcatc ctaagctttt tacaagttta aaaaccgctt ttgccaattt acacacggag
    11881 agtttttggc ttcaaaaggc ataaaagcat gaaaaaagct tttgttttag tggattatca
    11941 aaatgatttt attgatggaa gtttaggttt tgataaggct ttaaaaatca aagaaaatat
    12001 tcttaaagcc ttaaatcaaa tcgattttaa taacacgcat ttgcttttaa cctatgatac
    12061 gcatgatgag cattatctac aaagtaaaga aggtttaaat ttacctgtaa aacattgcat
    12121 taaagagagt ttgggttggc aaatgccaaa ggaatttgaa ccttttttac aaaaagctca
    12181 taaaattttt tataaaaata cttttggtag cttagaatta gctaatttca tacaaaaaag
    12241 tgattatgaa gaacttcatt ttgcagggct tgtttctcat atttgtgtgt tttgtaatat
    12301 cattttagct tttggtgcta agcctaatgc aaggataatt ttacaccaaa atttaagtgc
    12361 aagttttgat gaaaatttag aaaaatccgc ttttgatata cttagggctt atggtattga
    12421 aattgtttaa tgcaaggctt tatacttcat actcaaaaag ttaaagatga ggatttgatc
    12481 gtttatattt taagtcctaa aatgcttatt aaggcttatc gtttttatgg acttagacat
    12541 tctagtattt taagcggcta taaaatcgac tttgctttag aagaaaatcc tagtttttta
    12601 ccaagactta aagatgtatt gcatttggga tttttatgga ttatgcaaag ggataaaatg
    12661 cttatttggc aagaatttat ccgtctttta tataggcatt taaaagatgt ggaagagctt
    12721 gatagttttt attttgattt acttgatgag tgtgtgaaaa ggtttgaaaa acaaaatcca
    12781 aagcgtgtta ttgttgatgc ttatttaaaa attttggaat ttgaaggaag attgcataaa
    12841 gatttttttt gttttgcctg tgatgagaaa attcaaaatt ccattacatt gctaagggct
    12901 tttttacctt cgcattctca atgtgcttta ggatttgagt ttgaagagaa aaaactaaaa
    12961 caattttata gtagtaaaaa ttgtgcgatt tttgatgatg aagaaataga aaatttatat
    13021 catttgatta aggaaggttt atgatattaa gtgatgaaaa atgtgatttt ttagaatcta
    13081 tagcaagttt tttaagtcct aaagatgtgg agcttgtctt tgtggatagt aaagaaatgc
    13141 aagaaattaa cttagagcaa agaaaacaag ataaaaccac tgatgtactt tcttttccac
    13201 ttgaaaatat cgatgagagt ttgcctttgg gttctgttgt gatcaatgtg gatttggcaa
    13261 aagaaaaggc taaagagtta gggcatagct atgaagaaga aataagcttg ctttttatcc
    13321 acgctatgct tcatttgtta ggttttgatc atgaaaatga taatggagaa atgagagaaa
    13381 aagagaaaga acttatagag cattttaatt tacctaaaag tttgattgta aggactttgg
    13441 aagattaagt aagatttttt tcaagggcta gaagacttgc gctttatatt ttaaatatat
    13501 gagtaaaaat attaaaaaaa atcatttttg ccgatttact ttagaataaa atttattcca
    13561 aggtgataaa gatgatagta tttcctctaa gctcttttaa tagatatttt ggaaacaatc
    13621 ctttgcaaac acttaccaaa ataagagatg aaagtattga aaatggaaat cccgagctta
    13681 caaaaaaaca aagagaagaa ttaggtaatg atttgataga tttgtataag atttctaaaa
    13741 aattcagcga taaaatagaa ttagtcgagg gttcaataga agataagctt agaaacaatg
    13801 aattaccaga atcagaagtt aaaaatttat ttcaatggat ggatgaaaat gctaaacacc
    13861 ctcgttggat gcatattgat ggcgtgagtt atgatgaagc ttatgttaaa atttttcaca
    13921 caagcaaaag tatagatgaa tttaaagaaa aatatcttga gcttcaaaaa aaatattttg
    13981 ttgattttaa caatattgat tcatcgcaga aaaaactgca agaaacttca gaagaagaca
    14041 aaaaagcttt caaacctata caagtagaaa gtaaaagcga aacctacaaa gatgataata
    14101 aaatgaatga gcttttaaga aaactactag aaactaaatt tggcacaagc gatgagctag
    14161 aaattctttt tggtatgaat tttagcaatg ataatgcagg ggaatttaat aaaattcttt
    14221 ctcaaaacac ttcagcaaaa attatagata ttaaggctta agatttttta aattataaaa
    14281 atcaatcaag ttaaactaaa aaattcttct attttttttc gcatttcttc gacattgtcg
    14341 atacgattaa cggtatctct aaaggttgaa gcgtctttat gccctttaga atactcgtgt
    14401 aaatgcttgc gaaatatact tacgccttga tctttgtagt gttttatcat ttcatcaaaa
    14461 tgagtgagta tgatttcttt tttgagtttt tcatctacac ttttaccgct tttgatttca
    14521 taaaatatcc aaggatttcc tacgcttgca cgccctatca tgagtccatc acattttgtg
    14581 attttataaa cttctttagc gttttgtgcg ttaatatcgc catttgcaat cacaggaatt
    14641 ttcacgctcg ctttagcact agcaatggat ccataatcgg cttttccgct ataaagctgt
    14701 tttcttgtgc gtccgtggat acttataaaa tccaccccca agctttcaca aattttagcc
    14761 attttttcag gatatttttc attaaatcct agtcgaaatt tcacacttgt aaggcttttt
    14821 ttattgtttt ctttaatcac tcctacaaga tttttaaaaa gctctaaatt ttctagcaaa
    14881 gcactgccag cacattgttt aacaacttta tttacagggc aaccgcaatt aaaatcgatc
    14941 ccatctacaa aatccatttc atttagcatt tgcactgctt tttttagcac ttctttatct
    15001 ccacctgcaa tttggactat ataaggattt tctaattcag ctctttctag catatgtaaa
    15061 gttttagaac tttcataaac taaggcatta gaacttatca tttcacttat ggtaatatca
    15121 gcaccaaatt tttttactac attacgaaaa ggcagatctg aaaaacctgc cataggggct
    15181 aaaaacaggg gttttttgct aaaatctatc attgtatgag ttgatttaga tcgattttga
    15241 tatttttttc acgcaaggct aaaaaggctt taaaatcatt aaatttttta tcatcattgt
    15301 gaatttgttc tcttaactca tctaaaagtc caaattcagc caaaagatat aaatatgctc
    15361 ttaaagcttc gcttttttca tttttaattt tgttaaaaat tcctaaaata gcatcaggat
    15421 ttaaaagttt agtacttagt tttgctgcgt taagatagtc tttttcgctt aatatgttgt
    15481 gtgaaagtaa aacttcatat tctgctacac taagttctaa atttccttct ttaaaacgct
    15541 tgataagtgt gagaacttca gaaggctttt tagggatttt tacattttta atttgctcat
    15601 aactagcttt ttctataaga gtgttaaaag caatttcttc aaattcatct ttgatttcat
    15661 taaggttttt aagtttgtta taggcataat ttgcatcatt tttgagatga tttttttcat
    15721 tttgcaaata taaaacattg ttattttcga gtttaaattt gctaaggtta aaaaattcgt
    15781 ttttatttaa accatcaata agatctaaaa tttcattgat tttatttgag tgtggaattt
    15841 tttcatgtgt ttttatggtt ttaaaaagtt gtgctacaga tctaaattct tttgtttgaa
    15901 aagtggtttt aagatctttt tcaaggagta aatcttgagt ataagcttca aatttagctg
    15961 catctttaaa aaaatgctta aattttaaat aacgcaaaaa tccataaaat gctatgtgta
    16021 aaacggctaa aatcatataa ataaataaag gaataacaag ccatatcata ataggtagtt
    16081 caaaggtata agtgctgata tttagagtat agcttcctag ttctagatgc caagcaaagg
    16141 caaaaataag tgctatataa ataaaacttg caagtaagaa gagtttaatt ttcatgtttt
    16201 tttccttgtt ctgcaatttg acggcaagtg atacaatatc ttgcgtgagg tttgactttt
    16261 agtctttgag agtcgatttc atcatcgcaa gattcgcaaa ttccataagt gccgtttttg
    16321 attttatcta aagaatcttc gatttctata agttcttctt tgagattggt gctgatagca
    16381 aagtcaattt gagagcctgt ttctatgaca gaaaaatcta cactatcgct tgggacgcta
    16441 ttgtgaagag cttcgatttc atttgaattg ctttgcaaat tttctaagat ggcttttttt
    16501 ctttcttcta aaatattttt gaaattttgt atttcatttt ttttcatttt aaaactttct
    16561 atttgtgata agggtgattg ttgttgatgc aaaatgcacg ataaatttgt tctaaaagta
    16621 aggttttaac aaattgatgt gctaaagtaa gtttgcttaa tgatagtcta aaatccaaac
    16681 tttgattaaa ttcttctctt aaaccataag cacctcctat aaaaaaactt aattcatttt
    16741 tatcttggat gagttttgca aattctatac ttgtaagatc tttccctttt tcatcaagag
    16801 cgatacaata gcctttttta taaggcataa aagcttcttc atagcttttt tttgcttcta
    16861 tggcatttaa attttgagct aaggctattt ttttattaaa aacatttatt tcttttaaag
    16921 tggcgtattt ggagatgagt ttagagtatt tctcactaca agttttaaat tcatcacttt
    16981 tttgaataca aaagatatta acttgcaaat tattttccac taaaaaattt tagtacatcg
    17041 ctaagatatt gtttttgttc tcctctttca actatggcat ctataagtcc atgttctaac
    17101 aagaactctg ctttttgaaa accttcaggt aaatctgctc ctatagtttg tttaataact
    17161 cttgcgccag caaaacctac taaagcttca ggttcagcga tgattaaatc tccaagccaa
    17221 gcaaaagaag cacttactcc acccatagta ggatcggtta aaatgctaat ataaggaagt
    17281 ttttctttgc taagaagttt aagtgcagca ctagttttgc tcatttgcat caaagaataa
    17341 gtactttctt gcattctagc tccaccgctt gcacttacga tgacaagaga agttttgctt
    17401 gtgatagctc tttgtatagc tctaacaatt ttttctcctt caacagaacc taaagatccg
    17461 cccataaaag aaaaatcaaa tacaacaagt tgggttttta aaccattgat ttcacattct
    17521 ccactgatga cagaactttt tctacctgtt ttactttcac cttcgctaag gcgtttttta
    17581 taggatttgc tatcaacaaa ttttaaagga tctatagctt ctaaatttgc atcatactca
    17641 ataaaactgc cttcatcgct taaaagttta atacgttcat cagctgaaat tctcatgtga
    17701 taattgcatt taggacaaac attaaaacaa gattctattt ctttataata catcaaagca
    17761 tgacaacttt ggcactttac ccagtgattt ggcgcttctt taacgctagg ttgttgtctt
    17821 cttatttttg aaaaaatatc tgcaaaattc atatattcac ctaattattt tttaaaaatt
    17881 ctaagattat atcaaaaatt tttttgtctt ggcttaggag aaggaaattt tcattttttt
    17941 ctatatataa attttgatga attgctaaag cagctgctgt atcaaaaatt cgtgtttttc
    18001 caagaattaa tacaaaacta aaatacgaag cataagcaag acttaaggct gttgcaccca
    18061 aagagcgaaa ttttaattga ttttttgtta aaaaatcgag aagttctgga taaagtgaaa
    18121 ttttttcaac tatacctatt ttagaaaata gattaggtgt taagggtgag tattttggat
    18181 cggaaagatt ggatttaaaa gcttgtttgt tattaaaagc aaaaatttct tgactgacaa
    18241 gattgcaaac aaaagcactt tttgcctgat ctttttccat aagagctata gaagttccat
    18301 aaaatggtat tttagaaaca aaatttgaac ttccatccaa aggatcaaga atcatttgtt
    18361 ttgggctagc ttttccgatc aatccgcttt cttcagaaaa aatttgtcca aaacaactaa
    18421 gatattttat gaaaatttgt tcacatttta agtcaagctc atagccttga tttttatcat
    18481 agcctaattt agagcaaagt ttaagatcat tttgtgggat attgtttaga tacttgcgta
    18541 tttgcaaatt tgcattcaag caagcatcta aaaattcttt cattaaaagc gtgttccaag
    18601 attaaattca aaactattag tatcatcacc ttttttatca ttaagaggtt tggcaaatac
    18661 aagttgtaaa ggtccaatag gtgtaatcca ttcaatgcct atacctgtac tcattctttt
    18721 tatttcatct aaatttttac gccctatcat accataatca aaaaacacgc taccacgaag
    18781 tttgattcta tcaatcaaag gaaaactaag ttctacggaa ttggcaaaag ctatggttcc
    18841 gcctatttca tctccccatt gatttttagg acttactgtt ctgctttcaa aaccgcgtat
    18901 cgatctaata ccacctaaat aaattctttg gttaattggt aaataacctt catcccatac
    18961 tttataaaaa ctcgctttat agcgataaat aagatcatat cctatatagt cttgcaaacc
    19021 ttgataaaag ttaaatttag agcttgatga aataaattct tgatctccgc caagtccagc
    19081 gtattctaaa ctagttgaag caataatacc tgatcgtggc agataataat catctgtatc
    19141 gttaaaggtg attgctggag ttatagagct tttaatactt ttgccaagtt catatcctgt
    19201 tcttaaaaga gttggactta agtgatatat atcgctttgt tcaagattat aagttaagct
    19261 tacattatag tatcttgcaa attggcgtcc aattgttata tcaaagccgt aatttttttc
    19321 tgaataatta tcccattcat agtcatttga ataaagtgtt ccacccagac tatattgact
    19381 atcaagaacg cgtggattta cgagactaat ccttcccgat aaagtatcat cgcttttatc
    19441 tacgcttaca gagcttttta ttcctgaacc aaagatattt gtatccgata aagaagcgtt
    19501 aagcaaaata ccatcgcttg atccatagcc aatgcctcca gaaatagctc ctgtagaagc
    19561 ttctttaaca tcaacaatca aatcaatatg tgtatcatca actttttctt ctttgatatt
    19621 tacatcgtca aaataagaag ttctttttaa agcatttttt gactcgctta agtctgttct
    19681 attgtataaa ttaccttctg ttatatataa ttctcggcgt atgacgcgat ctacggtgcg
    19741 tgaatttcct gaaataataa catttcttat ataaacttta tcgtgaggga ttactttaaa
    19801 tacaacggtg gcttcttgag tttgatcatt tttttgaata tcaggataga cttctacaaa
    19861 cgcataaccc aaatcagcac tttgtgtttc tatggtttta acatcttttc taatgtcttc
    19921 gatattgata gttttgccag cgcttgatct taaatctttt acggtttgtg cattttgctt
    19981 atcatcaaat aaaggatttt ctatgcttat acttttaatt ttataaggct ttccttcttt
    20041 gataaaataa gtcaaatttg cttgataagt atctgtgtag gttttaagat aaggggagga
    20101 tacttgaaca tctaaatatc cttttttcat atattcatca gcaattcttg aactatcgtt
    20161 actaagttca aaaactttta attttccatc attgcgtccc cacatccatc ccataaattc
    20221 tttttctttg ttaacaacag caggttctat atcagaatat gaaaatttct ttgctccact
    20281 taaatgaaca ttatcaataa tgatattttc accacgattt actataaatt caagctctag
    20341 tccatcagta ttttctaaag tctttttttt gtattctaca atagtatcaa aataactttt
    20401 tgcttcataa taagctttaa tgcgttcaat agcttctttt atatttcctt catcaagtag
    20461 tgtacctctt ttaatcccta aaatactttc aacttgtttt ctatcatttg aagctatacc
    20521 tgtgatagta acctttgcta tagttggttt ttcagtaact ataatttcca aaattccatt
    20581 gttgttttct actgcaatat tttcgaaata attttgttta taaagattaa gaatagcagt
    20641 gttgattttt gcaggattta tttcctcgcc tattttaagc cccgcgatat ttatagcgct
    20701 tgtgttcgat aaatgattta atccgataaa tttaatatct ttaatggttg ctgcattggc
    20761 catagcaact aaagcacaaa tactaataag atgttttttc attgattttt tacctaaagc
    20821 tttattaaaa gctgtataat agcaaaaaaa atttaacaaa aaaactaagg tagaaagtat
    20881 gaaaatagca attatagggc ttgggcttat gggtggatct ttagggcttt gtttgaaaga
    20941 aaataagctt atttcttgtg tttatggtat ggatttaagc aaagaaaatg aaaaagatgc
    21001 cctgcaatta ggtcttattc atgagcttat agaatttaaa gatttagctt tatgtgatat
    21061 gatttttgtc gcaactcctg ttgatgctat tatagaaatt ttgcaaaagt tagttgattt
    21121 gccttctaat gtaacaatta tagagcttgg aagtacaaaa agaaaaatta tagaaagttt
    21181 gcctaagaat ttaatcaaac aaactctttt tgctcatcct atgacaggaa ctgaaaattc
    21241 aggtccaaaa gcagctttta aagagcttta taaagatgca gtttgtgttc tttgtgatag
    21301 tgaaatagct gatgatttac atcaaaaaag agcggtagaa attttttctc atttagggat
    21361 gaaaattgtt tttatggata gtaaagccca tgatcatcat gctgctatta tttctcattt
    21421 gcctcatgtt ataagttttt ctttggcaaa ttttgtaatg aaggaagaag ataaaagaaa
    21481 tattgttcat ttagccggag gatcttttaa aggtatgagc agaattgcca aatcatcgcc
    21541 acaaatgtgg gaaagtattt ttttacaaaa taaagataac ttattaagtt ctattgattt
    21601 ttttcaacaa gaattagaga gatgtaaaca aatgatacaa ttagacaaaa acgatgaatt
    21661 aagagaatgg atgaaacagg ctaataccct aagagaaatt ttataaattt gctagatatt
    21721 tactgaaaat ataatagaat ttatattaaa agcaacaaaa acattgaaaa tttttaagga
    21781 aggttatggc aaaaagaaaa ggcaaaactt atttatctgt tttaatttta gttttaatag
    21841 caattttgat tttttttatt tcaagattaa gtatttttga aaaaaatcct cctcaaattt
    21901 taatgccaga tgttgtatat actgatctta aaaaacctat tttagtgcat attaaagatg
    21961 atgaaagttc tatcaaaaac gtacaaatta tattgcataa agacgacaat actagtgcaa
    22021 tggttatagc agatgaaaag atttctaatt taaaagatat taccttacaa gttgctttgc
    22081 caaaatttgg ttacaaagaa aatgtaaaat cttttgtttt ggaggtgata gctaaagatt
    22141 ctagtttttg gaattttttt agtggcaatg aagcaagaaa acaaattgcg gtattagtag
    22201 ataatacggc tccaaaaatc aatatcataa gcaattctta ccaaatcgag caaggtggtg
    22261 ctggggcagt tgtttttaag gctgatgatg ctaatttaga taaggtgtat atagaaacaa
    22321 ataaaggtaa aatctttaaa gccacacctt atgtaaaaga aggatattat gcggctttga
    22381 ttgcttggga tgcaagagat gaggaatttc gtgcatttgt tatcgctacg gataaagcgg
    22441 gcaatatttc aaaagaacgt ataaggtatt attttgttaa tcgtaaatat cgtgtttcaa
    22501 atatcaatct aacggataaa tttttagatg gaaagattga gaatttagca aatcagtacg
    22561 ctccaaaaga taataatctc aatcgttatg aaaaatttaa gtttgtcaat gaaactttaa
    22621 gaaatagcaa tgaaaaactt atccatgaaa tcacttcaaa agtacctgag gaaaaaattg
    22681 ataattttga tttgaattta tttttacctc ttaaaaatgg tatgaaagta gcggattttg
    22741 ctgatcatag gtattattct tataatgggc aatttgtgag tgattcttat catatggggc
    22801 ttgatctagc aagcgtagca caagctccta tcataagtaa taacgcaggc aaggttgttt
    22861 ttgctgctga aaatggaatt tatggtttaa atttaattgt ttatcatggt tttggagtat
    22921 atagtcttta tgggcactgt tcttctaaaa atgttgattt agatgaaatg attaataaac
    22981 aaagcattat aggcaaaaca ggaacaagtg gtttagcctt aggcgatcat ttgcattttg
    23041 gagttttggt tcaaggggtt gaaacgcgtc ctgaacaatg gcaagataaa aaatggatag
    23101 aaaataatat ttacaatgtt ttaaatgatg gtaaaaagat aattttagga aaaaattaat
    23161 gaaacaatta actttagcaa aaactgtcaa aggcgtaggt ataggacttc ataagggtga
    23221 acccatagaa attactttag agcctttaga agcaaatagt ggtatagtat tttttagaag
    23281 tgatcttaat gcaagctata aggcaagtcc tgaaaatgtg atcaatactc aaatggcaac
    23341 tgttttagga gatgaaagag ggtttatttc tacaatagag catttaatga gtgcgattaa
    23401 tgcttatgga atcgataatg tacgcatagt tttaaatgca aatgaagctc ctgttatgga
    23461 tggatcaagt attagttttt gtatgatgct tgatgaagca ggggtaaaag aacttgatgc
    23521 gcctaaaaaa attatggtaa ttaaaaagcc tatagaagta agagatggta ataaatttgt
    23581 gcgtttaact cctactaaag aaccccgtat taattacaca attaaatttg acaatgctgt
    23641 tataggtgaa caaagttaca attttgaatt cagcaaaaaa aattatatag aaaacatagc
    23701 aagagctaga acttttggtt ttttaaaaga tgttcaagct cttaggagta tgaatttagc
    23761 actaggtgga agtttagaaa atactatagt ggtagatgaa aatcgtattt taaatcctga
    23821 aggtttgcgt ttcaaagatg agtttgtaag acataaaatt ttagatgcaa ttggagattt
    23881 aaccttactt ggatatcgtg tttttgggga ttatacttca tatgctggga gccatcattt
    23941 aaatcattta cttactaaag aagttttaaa agataaagat gcttatgaaa ttgtaagcct
    24001 tgaaaaaaca acccaaaaag cttatgaaaa ggtatttgca taaaaacttc tcttttactt
    24061 aatactttat ctaagccttt aatgatcgga atttatcaag atgataaact tataaaaact
    24121 tataaaagtg aagaaaaagc aagcgaattt ttaccaaaaa ttttagatga attgcttaaa
    24181 gagtatgatt ttacaagttt aatctatgct aatggtccag gttcttatat ggggattaaa
    24241 atttcttatg taagtttgag tactttaagt atagtaaaaa atattccttt atttgcggtg
    24301 agtgcttttg aattaaatgg ctataaaccc ataagtgcaa ataaaaattt ttgttttgta
    24361 tataaggaag gtgaaatttg tttagagcaa aatatcccag cagagttttt tttaccaaaa
    24421 aatttacaag agcttaaact aaataatgat aatcttccct tttatttttt agatgcaatt
    24481 taggatgaaa tttgaaaatt ttagttccag ctacgagtgc gaatttaggg ccaggttttg
    24541 attgtttagg acttagttta aagcttttta atgaaactca aatccaaaaa tcaggtgttt
    24601 ttagcattag tattggaggc gagggaagtg ataatatttt tcttaaaaaa aacaatatat
    24661 ttgtaaatat tttttatgaa atttatgaaa aactaagcgg aaaaaaagat aattttcgtt
    24721 ttatttttca aaataacatt cctctttcaa gaggattagg aagctcttca gctgtgattg
    24781 ttggagctat tgccagtgct tattatatga gtggatttaa ggtagaaaaa gaacgtattt
    24841 tagatgaagc tttaatttat gaaaaccatc cagataatat cgctccagct actcttggtg
    24901 gttttgtgtg ttctttggtt gaaaaaaata aagtttatag tatcaaaaaa gagattgata
    24961 aagatttagc tgctgtggtt gtgatcccaa atttggcaat gagcacggaa caatcacgcc
    25021 aagctttggc caaaaattta agttttaatg atgcggtttt caacctttct catgcttcat
    25081 ttttaaccgc ttgttttttg gagaaaaaat atgaattttt aaaatttgca agtcaagata
    25141 agctccatga aatcaatcgt atgaaaaact tacccgagct ttttgaagtg caaaaatttg
    25201 ccttagaaaa taaagcttta atgagcacac tttcaggttc gggatcgagc tttttttctt
    25261 tagcttttaa agatgacgct ttagctttgg caaagaaaat acaaacaaaa tttaaagatt
    25321 ttcgtgtgca atatttagaa tttgatgata atggctttga aatttgctaa aaaatataaa
    25381 aaaaagatat aattttgaaa aaacatatac caattagaat gtgcatagtg tgtaaaaacc
    25441 gctttgagca aaatatgtta tttagattta aagttgtttt aggagatatt gtgcctaaag
    25501 cagaacatgg aagaagcgga tatttatgtc aaaattgtat tgagagagaa gataaagtct
    25561 tacaaaaagc attttctaaa atatgtaaaa atttaaatac taaaattact cagcaaggac
    25621 ttaaggagat atttttaaat ggcaaagatt agaattcatg aaatcgcaaa agaattaggt
    25681 tatgatagta aggaaattat tgaaaaggca aatgaattag gacttggaat taaaacagca
    25741 tcaaatgctg tagaacctga gattgcggca gctatttatg agtatataca aacaagagaa
    25801 attccagaag cttttaagaa aaatatcaaa actcctacgg caaaaaagcc taaaaaagaa
    25861 aatataaaag aacaagaaaa gctaaatgaa tctgaaaaaa aagaacctaa aaaagaagaa
    25921 aagcttaaac aagaagttaa aaaagaagaa ttaaaaattg aaaaagaaaa tgcaaaagag
    25981 gaagaaaaac aagaaattat tgatgctcat aagccacaaa gccttgctag tgcaacttta
    26041 gccaaaagac gcggacttgt tattgttaaa aagaaaaaag acgaagaaga aattcaagtt
    26101 aaaaaagaag aagtaaaaaa ttcaaatgat atatctatca ataatgaaga gcgcttaagt
    26161 ttaaaaacta tgttttcaaa tgctgatgag agtttaaaga aaaagaaaaa agaaaaaaaa
    26221 tcttttgttg cgagtaaaaa agaaagtacc gaaaaaatga attttttaga tgaacatgat
    26281 tttggtgata tttctttaga tgatgaagat gaggtagtat tacctgattt tagtgtaaaa
    26341 gaacaagaaa aaccacaaaa tatcaataaa aaacaaccta attttataag acaagctgtt
    26401 ggaaattctg cgggttttgg gcttgaaggt ggaattcaaa gaagaagtcg taaaaaacca
    26461 tctaaaaaga ttgaaaaaaa ggaagtagaa gaagtaggta gcgttgctat ttctaaagaa
    26521 attcgtgtgt atgaattcgc tgataagata ggaaaaagca ctagtgaagt gatttcaaaa
    26581 cttttcatgc ttggaatgat gacaacaaaa aatgatttct tagatgaaga tgcgattgaa
    26641 attttggctg ctgaatttgg tatagagatc aatatcatta acgaggctga tgagtttgat
    26701 tatgtaaaag actatgaaga agagactgat gaaaaagatt tagtgactag agcacctgtg
    26761 attaccatca tggggcatgt tgatcatggt aaaacttctt tgttagatta tattagaaaa
    26821 tcacgcgttg caagtggtga agcagggggt attactcagc acgtgggtgc ttatatggta
    26881 gaaaaaaatg gacgtaaaat tacttttatt gatactccag gtcacgaagc ttttactgct
    26941 atgcgtgcaa ggggtgcaag tatcactgat attgtaatca tcgttgtagc cgcagatgat
    27001 ggggtaaaac cacaaactaa agaagcgata aatcatgcta aagcagcagg tgtgcctatt
    27061 attattgcta ttaataaaat ggataaagaa gcagcaaatc ccgatatggt aaaaactcaa
    27121 ctcgcagaaa tggaaatcat gccagtagaa tggggcggat cttatgaatt tgtaggggtt
    27181 tcggctaaaa caggaatggg gattgaagat ttgcttgaaa tcgtgctttt acaagctgat
    27241 attttagaac ttaaagccaa tccaaaaagt tttgctaaag caagcattat agaaagttct
    27301 gtgcaaaaag ggcgtggtgc ggtggctact atcatcgtgc aaaatggaac acttactgta
    27361 ggaagtaccg tggttgcagg cgaggcttat ggaaaagtgc gtgcgatgag cgatgatcaa
    27421 ggtaaagcct taaaagaaat taaaccaggc gaatgtgggg ttatcgtagg gcttagtgaa
    27481 gtagcagatg caggtgaaat tttaatcgca gtaaaaaccg ataaagaagc aagagaatat
    27541 gctaataaac gccacgaata caatcgccaa aaagaactta gcaaatccac taaagttagc
    27601 attgatgagc ttggagctaa gatcaaagaa ggtaatctaa aagccttgcc tgttatttta
    27661 aaagctgatg tgcaaggatc tttagaagcc ttaaaggcaa gtttagaaaa acttagaaat
    27721 gatgagatta aagtgaatat cattcatagt ggagtaggag gaatcacgca aagtgatata
    27781 gagcttgcaa gtgcgagtga aaactctata gtactaggtt ttaacatacg cccaacaggg
    27841 gaagttaaag agcgttctaa agataaaggc gtagaaatta aaacttataa tgtgatttat
    27901 aatcttttag atgatgtaaa agccttgctt ggtggtatga tgagtccgat tatttctgaa
    27961 gagcaattag gacaagcaga gattagacaa gtgatcaatg tgccaaaaat cggacaaatt
    28021 gcaggttgta tggtaaccga aggggtgatt aaccgtgggg ctaaaattcg ccttatccgt
    28081 gatggagttg tggtttatga gggaaatgta agctcactta aacgctttaa agatgatgct
    28141 aaagaagtgg caaaaggcta tgaatgtggc gtaggtatag aagggtgcga tgatatgaga
    28201 gtgggtgatt atatagaaag ctataaagaa gtagaggaac aagcaagtct atgaacccaa
    28261 gtgagattaa aaaactacgc actgaaagta tcttaaaaga gctgatccct gaagctttag
    28321 caaatttaga tgatgaaaat ttgaaaaatt tgtgtgtagt ggatgtagag tgtaaaaaag
    28381 gcagatacga tgcttttgtg tatcttgata aaatgttttt taatgttcat gagcaagaaa
    28441 aaattttatc ttctttaaaa aaggcaagta gagctttgca aaattattgc atgagcgagc
    28501 agggctggta taggtgtccg aattttcatt ttaaatttga tgataggctt gagtatcaaa
    28561 accatatgga cgcacttttt gaaaaaataa aaaaggataa aaatgaatct tgaagccctt
    28621 tgcaaagaag cagaacttag cttttatgat gatgagctag taagtgaaaa tggtaaaaaa
    28681 atttatagaa tttatgtgca aaaagaaggc ggggtaaatc ttgatgattg tgcaaagctt
    28741 agtgaaattt tatcgcctat ttttgatgta gaaccacctg taaatgggga gtatttttta
    28801 gaagtatctt caccaggact tgaaagaaaa ctgagtaaga tagaacattt tgcaaaaagt
    28861 ataggtgaac ttgcgaagat cacaaccaat gaaaaagaaa aaatcgaagc aaaaatcatt
    28921 gctgtagatg atgaaaatat cactttagaa aatttagaaa ataaagaaaa aactactata
    28981 aattttaatg atataaaaaa agctagaacc ttcatacaat ggtaaaaatt tagatttttt
    29041 tatataatta aaataaaaac aaaaaatcaa aaggcatgca atgctagaaa ataaatgtga
    29101 ttggaaaata agtaaggcag atcaaaatgg taatgtgtat tattattttc caaaagatga
    29161 agatgaattt aaagaagcag ttgtaaaaaa tggcggtatg agtgtgtatg tttatcaaga
    29221 aggtaaattt atagatgaat ttcacacaaa aagtcaaggt gataaatgga cttcttctat
    29281 tcttaattat ttaaaaacta tgagtaaaga tggagaaata ttttatagat attataaaaa
    29341 ttgcaaattt tttgctatac caaaaaatac attttctaaa gatgatttta aaattataaa
    29401 ggataatata aataataata tatccttaaa ccaaattctt tatgggtctc cagggacagg
    29461 aaaaacttat catactatag ataaggcttt ggaaatcttg ggtgaaaatt tagaaagtag
    29521 agatgagaaa aaagctaaat ttgatgagta tgtaaaaaat ggacaaatag tatttactac
    29581 ttttcatcaa agctacggat atgaagaatt tgtagaaggt ataaagccta gtttaaatag
    29641 tgatgaaaat tcgcaaatta attataaggt taaagatgga atttttaaag agctttgcaa
    29701 gaaagctttg gagaatagag atgacataga aagttttaat ttttatataa atgacttgaa
    29761 agaaaaaaca aaagaagatg ccaataatcc tgaaaaatat tttcaattgc caaatacaaa
    29821 atattctatt caatatagag gtggaaaaac atttagaatt aaatttgatg atatgagcaa
    29881 aaatcataaa gactatccag taagtataga taatatagaa aaattatata aaacttctaa
    29941 tatagatgaa atatataatt cagcatatgt taaagctatc ttaaactatt tgaaatcaca
    30001 aggtttaaaa gattataaag aaaaagatga aaaaataaat ttaccttata taatcattat
    30061 agatgaaatc aatcgtggta atgtaagtaa gatttttggt gagcttataa ccttgataga
    30121 gcctagtaag agattaggaa atgaagaagc attagaatta actttgcctt atagtggtga
    30181 aaaattcgga gtgcctaaaa atgtttatat cataggcact atgaatacag ccgatagaag
    30241 cataacttct cttgatacag ctttaagaag aagatttgaa tttgttgaga tgatgcctaa
    30301 ttctgattta cttaataatg tttttatttg taaagatgta gaaaatccaa atgaagacga
    30361 agattattta ggagatgatg ctaaaacaga gggttatgca gagatacttc aaaatatttt
    30421 aataagtata aataaaagaa ttgaattttt attagataga gaaaaaacta tagggcatgc
    30481 attttttatg agtgaagctg ttaaatttaa taaaaataat tggattaagc cagatgaata
    30541 tgaagaagat tggtatgttt taagtatctc aaagttaaaa aaagtttttc aaaacaaaat
    30601 tatcccgctt ttgcaagagt atttttataa tgattatgct ttgattaatg cggttttaaa
    30661 tgataatggt atgatttttg aagataaaaa agacgataaa tatcttcaaa aaataaaaaa
    30721 tctagatagt gttaatagcg agagaagtat ttataatatt gcttcatttg atgataaaat
    30781 ttgggataaa atagaaatat atcaagcaat ttataatgat gaaatagcaa ataaattaaa
    30841 aaacgaaaat gaatagtatt ttttccatca tcgaatacca agctttttct aaagaagatt
    30901 taaaagaaat tttcaaagaa aaggccgaag ggttttataa agagctagaa gactttgcaa
    30961 aaaataatga aaatcttcta ggctttaaaa acaaaaattc cttaaaagct aaaaattatg
    31021 tcggcattat acagactaaa agcggggttt tggagatttt gccaaaatgc acgaatttag
    31081 atagttataa aaaagaagat agttcttcaa atcatgacaa agaaaaacta agaagatgtt
    31141 atgaattaga caatatttct aaaaataatg atttttatga aaaagatttt aaatttaatc
    31201 ctaaaaatct tttgataaat atgctaaaaa ccttaaaaaa ctcccccttt aaaaaatcgc
    31261 aaatttcatc tttgcaaagt tctaaaattc ctttatttga agtgtttatc actatgtttt
    31321 tagatgaatt tgatagcgta tataaaaaag gcttgatgag atcttatcta agttgcgaag
    31381 aaaatagggc ttttttaaag ggaaaattac tatttaacga gcatatcaag cgaaatttga
    31441 tacacaaaga aagatttttt acaagcaatg atgagtttgt tttagatata gcacccaatc
    31501 gtttgataaa atcaacgcta aattttttaa aatcaaaaac aagtttgaat aaatttagac
    31561 ttataaaatc tatgcaaatt ctcgatgagg tagaattttc taaaaattat gaaaaagatt
    31621 ttagttataa aatttcaaga cattttgatt attatgaaaa cttgcttttg tggtgtaaaa
    31681 ttttcttaaa aaatgaaagt tttatgcctt atcatggtaa aaatgaagct tttgctttgc
    31741 tttttcctat ggagaaaatt tttgaagatt atgtagctta tatgctaaaa aaagtaaatc
    31801 cagctcaaga tattaaagtt caaaacaatg gaaagtattt aatctcaaaa aatgatgaaa
    31861 attgtttcat gttaaagcct gatttatata tagaaaataa aatgatccta gataccaaat
    31921 ggaaaattcc aaatgatagt gaagatgaga aaaaacaggg tatagaacaa agcgatttgt
    31981 atcaaatgtt tgcttatgct tgcaaattta aaatttatga tattaaactt gtgtatcctt
    32041 tatgtgaaaa aactcaagat ttacaaagaa aaatcgcaga aaaatttttt gtttttaagg
    32101 caagcgaaca tttgtatttt aaagaacaag ggcaaaaaga tataaaagtg caagtgtgtt
    32161 ttgcaccttt acctttttaa aaatttgcct atcaaatgca ttaaaaaacc aaaacaagct
    32221 acagctatga tacaagcacc gcttgagagg ttaagataat agctaagtat aagtcctaaa
    32281 acacaaaaaa tcatacttaa aaaacttgct aaaaccatga taaagccaag ttttttggtg
    32341 aaattttcag caataaagct tgggatacta agtaaagcca taaccaaaat aagccctaca
    32401 aggcgtatag aaataactat acaaaaagcc ataagggcga ttaaaagata atgaaaaaaa
    32461 cttgtattga taccacgaac ttttgcaaat tccgcatcaa agcttaatgc ttcaaattgt
    32521 ctataaaata aaaagatcaa aagcaccacc acgctatcaa ccaaagccat aagccataaa
    32581 tcttgcgtcc ctacagctaa aatgctccca aaaagataag ccattaaatc tgtgttataa
    32641 ctagggctta aatcgattaa aataatccca acagccattc caaaagccca gattacagcg
    32701 ataatactat cacttctgtg ttcatagcgt ttagctaaaa aagctactaa aaaagccaaa
    32761 aataaagtaa atattcccgt gcttaataaa ataggcaaag agaaataaaa agctatacct
    32821 ataccaccaa aagccccatg tgttatacct ccagccatag aaaaaaggcg atttatcatc
    32881 accaaagtac ctatgatccc acaagctata ctgactaaaa tcgctcctag taaagcgttt
    32941 tgaaaaaagg tgaaatttaa aatttcaagc attattttcc tttgaaaatt ttaaacaaaa
    33001 attttctttt ttaaattctg tttttttcaa atttcttctt gtaaattctt gttcgcatag
    33061 ttttttgcta tcgcaatttt tttcatcgca aaaacaagta tttaaactca tttctacatc
    33121 acaaaaatga gagtgatttt cgtataaatg ttttaaaaat gaactttttt ctttttcttt
    33181 agtgttagta tgcaagaaaa gttctttgtt taaatgtgca attttatcgc tataagctaa
    33241 tacaaggttg atatcgtgac aaatgagtaa aattcccatg cctttttggt gcaaagagct
    33301 tagaagttca aaaatttgta tagcagactt gttatcaacg cttgcggtag gttcatctaa
    33361 aataagcatt ttgcattcac tagctaaggc tcttgcgata aaaacacgtt gcctttgtcc
    33421 tccacttaga gaatcaatgg ttttgttcca aaatttttcc attcctacac tttttaaagc
    33481 ttgcatagct ttttctttat cttttttccc ataaaaacca aaaatttttt tacttacaag
    33541 tcccataaga acgatttcaa gtactcttgg acaaaaatta ggattggcta gagtgtgttg
    33601 aggaacatag cctatttctt ttttttgaag agctttgaaa tggatttcat ttttggattt
    33661 taaaagtcct aagataagtt ttacgagtgt tgattttcct gcgccatttg gacctatgat
    33721 agagagaaag tctttattgt catagctaag attgatgttt tttaagatga tttcattatt
    33781 ataagcgtag tttagattag aaatttcaaa aaaaagcatc aaaaaacctg attataaatt
    33841 atgagaaaag gcatcagcag tttttaaaag ctcattttcc caatcataag ataaatgatc
    33901 tattttgtaa atttttgcat cacattcttt agcaagtgtt tttgctgcat tttcagggaa
    33961 accattttga acaaaaatga cttttaaatt tttatttttc attagagtga taagtttttg
    34021 caaatctttg ctttttggtt ccttgcctaa aatttctaca ggaatttgcg taagattata
    34081 gcgttttgca aaatatgtcc aagaaggatg ataaactaca aattctctat tttttaattt
    34141 ttctaatttt gaggcaattt gtaaatttaa actatctaat tctgctaaaa atttatctaa
    34201 attttcttta tataaatttt cattttgtgg atatttttga attaaggtgt cataaatatt
    34261 taaagccata gtttggacta aaataggatc tagccaagta tgaggatcaa aatgctcatg
    34321 ttcgtggtgt tcatgctcat gagagtgttc gtgtgtatca tgagtttgaa tcaaagctat
    34381 gtttttttgc atatttacaa cttgaagttt tggaaaattt tgtttaaatt tatccgtaaa
    34441 aactttttca aattctaagc ctatagtgaa ataaatatca cttttttcaa gttttttcat
    34501 agtacttggt ttaaattcaa aattatgctc attgctattt gggggcaaaa taacattgat
    34561 atctagagta tttgcagcta tttttttaac aaaaaatgct tgaggtgcta tactgacact
    34621 aactaaattg ctactagtat tttgttcttg ctctaaattt ttagcttgtg tgaaagtata
    34681 aaatatccct aaagataaga taaataatat aatttttttc aaaatatttc ctttcgatat
    34741 aaatttttaa attataacga tattaagctt aatacataga attttcgaag cgatatttat
    34801 ttaaataaaa ttttttatta cttttatatt taagtaaaaa tcta
//
LOCUS       DARBBO010000005        33005 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.005, whole genome shotgun sequence.
ACCESSION   DARBBO010000005 DARBBO010000000
VERSION     DARBBO010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 33005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33005
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.005"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(39..1217)
                     /gene="trmB"
                     /locus_tag="SB854_000154"
     CDS             complement(39..1217)
                     /gene="trmB"
                     /locus_tag="SB854_000154"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEG0956206.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSRLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKAQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLVQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFAFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(1217..2452)
                     /locus_tag="SB854_000155"
     CDS             complement(1217..2452)
                     /locus_tag="SB854_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HEG0956207.1"
                     /translation="MMKRFRLSFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWEPLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     GSSQVVSSTSKALPPQVEHLSASTDGSSKIILTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSSKVKAAQ"
     gene            complement(2397..3365)
                     /locus_tag="SB854_000156"
     CDS             complement(2397..3365)
                     /locus_tag="SB854_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG0956208.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINVVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRYILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFEQINLGENDEKISLEFLLEFFNSFA"
     gene            3443..4543
                     /locus_tag="SB854_000157"
     CDS             3443..4543
                     /locus_tag="SB854_000157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEG0956209.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            4597..4673
                     /locus_tag="SB854_000158"
     tRNA            4597..4673
                     /locus_tag="SB854_000158"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4631..4633,aa:Ile,seq:cat)
     gene            complement(4782..4857)
                     /locus_tag="SB854_000159"
     tRNA            complement(4782..4857)
                     /locus_tag="SB854_000159"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4822..4824),aa:Phe,seq:gaa)
     gene            4997..6340
                     /locus_tag="SB854_000160"
     CDS             4997..6340
                     /locus_tag="SB854_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEG0956210.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGFIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FNTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            6351..7001
                     /locus_tag="SB854_000161"
     CDS             6351..7001
                     /locus_tag="SB854_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEG0956211.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(6998..7669)
                     /locus_tag="SB854_000162"
     CDS             complement(6998..7669)
                     /locus_tag="SB854_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthetic enzyme MqnA/MqnD family
                     protein"
                     /protein_id="HEG0956212.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGFKASMEHKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTLNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQKYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(7675..8301)
                     /gene="upp"
                     /locus_tag="SB854_000163"
     CDS             complement(7675..8301)
                     /gene="upp"
                     /locus_tag="SB854_000163"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEG0956213.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEV
                     SKDFSLKEIEISTPIQKTIVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEACNFLKSQGVKKIKFISIL
                     AALQGLQKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(8298..9533)
                     /locus_tag="SB854_000164"
     CDS             complement(8298..9533)
                     /locus_tag="SB854_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEG0956214.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSHDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEIDVHSIEEIVNFCKSLAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFNEKAYFESLK"
     gene            complement(9535..10926)
                     /locus_tag="SB854_000165"
     CDS             complement(9535..10926)
                     /locus_tag="SB854_000165"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG0956215.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNAKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFINKNNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLEVDEC
                     KKRIENFLKVRGK"
     gene            10991..11806
                     /gene="salC"
                     /locus_tag="SB854_000166"
     CDS             10991..11806
                     /gene="salC"
                     /locus_tag="SB854_000166"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HEG0956216.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSK
                     NQSYEQFRANFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGAQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(11843..13174)
                     /locus_tag="SB854_000167"
     CDS             complement(11843..13174)
                     /locus_tag="SB854_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEG0956217.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSEIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(13176..13631)
                     /gene="accB"
                     /locus_tag="SB854_000168"
     CDS             complement(13176..13631)
                     /gene="accB"
                     /locus_tag="SB854_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEG0956218.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSVKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            13777..14337
                     /locus_tag="SB854_000169"
     CDS             13777..14337
                     /locus_tag="SB854_000169"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HEG0956219.1"
                     /translation="MGLKADNWIRKMALEHKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            14387..15391
                     /gene="pseB"
                     /locus_tag="SB854_000170"
     CDS             14387..15391
                     /gene="pseB"
                     /locus_tag="SB854_000170"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HEG0956220.1"
                     /translation="MFNKKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMASVFNAPCMRYFIGDVRDKERLSTAMRDVDFVIHAAAMKHVPIAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     GVTRYGNVVGSRGSVVPFFKKLISEGAKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITDLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKFVDKDNDFSINAIGEKGQKVKDGFSYSSDNNPLWASEKELLEIINHTESF
                     "
     gene            15393..16523
                     /gene="pseC"
                     /locus_tag="SB854_000171"
     CDS             15393..16523
                     /gene="pseC"
                     /locus_tag="SB854_000171"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002777631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HEG0956221.1"
                     /translation="MLTYSHQNIDQSDIDTLKKALKDEILTGGKKVNEFEEALCEYVG
                     VKHACVLNSATSALHLAYTALGVKEKIVLTTPLTFAATANAALMAKAKIEFIDIKNDG
                     NIDEKKLEARLLKDSKNIGAISVVDFAGNSVEMDEISNLAKKYNIPLIDDASHALGAL
                     YKSEKVGKKADLSIFSFHPVKPITTFEGGAVVSDNEELIAKIKLLRSHGIVKKRLWDS
                     DMVELGYNYRLSDVACALGINQLKKLDHNLEKREEIASFYDKEFEKNPYFSTIKIKDY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGIGVQVHYKPTYEFSFYKKLLGEIKLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCE"
     gene            16516..17826
                     /locus_tag="SB854_000172"
     CDS             16516..17826
                     /locus_tag="SB854_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HEG0956222.1"
                     /translation="MNKLDFRSQDFSQTGKAMYELACELFPIPRSITGQGFRDSLEIL
                     NKTLGGGGILKFHSIKSGTKVFDWIVPDEWNAKEAYIITPEGEKICDFKKHNLHLLNY
                     SEAIDKEIELEELQNHLYSIEEMPDAIPYVTSYYKRRWGFCLTHNERKKLKKGKYKVY
                     INAKHDENGVLDYADFILPSTQNSKDEILISTYLCHPSMANNELSGPVVAIFLAKWLL
                     SLKERKYNYRFVIIPETIGSIVYLSKHLEHLKKHVKAGFVLSCLGDDHAYSLIHTPKK
                     NTLSDKVALHTLKNKKNFKAFSFLDRGSDERQYNAPLVNLGIVGVCRTRYLEYEQYHT
                     SKDDLNFISEKGLMGGLQSIQEMILNLEINAVYENTIVCEPNLGKRGLYHTLSTANDI
                     PLACNFLAYCDGENDIIDIANILNMQAYEFKELLEKIKFYGLVK"
     gene            17823..18612
                     /locus_tag="SB854_000173"
                     /pseudo
     CDS             17823..18612
                     /locus_tag="SB854_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989744.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aminoglycoside N(3)-acetyltransferase"
     gene            18633..19424
                     /gene="legH"
                     /locus_tag="SB854_000174"
     CDS             18633..19424
                     /gene="legH"
                     /locus_tag="SB854_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase LegH"
                     /protein_id="HEG0956223.1"
                     /translation="MKYLLEFENKKYSTYDFIETFYKLGLQKGDTLCVHTELFNFGFP
                     LLSRNEFLQTILDCFFEVIGKEGTLIMPTFTYSFCKNEVYDKINSKTKMGALNEYFRK
                     QTGVKRTNDPIFSFAIKGAKEELFLKDTTSCFGENCVYEVLTKENGKYMTFGGQGHTL
                     THYAEEQFNVFYRYHKIFSGILIDENNISYNKTISYYVRKLDISSEPNLINIINIVNN
                     TKNFKKNNFAGDHINIYNAKEYIEILWKKLDINQTILIENYDTIY"
     gene            19455..19685
                     /locus_tag="SB854_000175"
     CDS             19455..19685
                     /locus_tag="SB854_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG0956224.1"
                     /translation="MEKQFYEILENILETKVDENTNLSMENCKNWTSLAHIDIIMSLE
                     EEFEIKFNKEDLSLLKSQNALLEKIQTLKAEK"
     gene            19682..20575
                     /locus_tag="SB854_000176"
     CDS             19682..20575
                     /locus_tag="SB854_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG0956225.1"
                     /translation="MKENIEKLFQAIAQKNPIHSKYLKKIEFSQEDEEEFDKLISYYI
                     QDGISIEEQCDCYLLILNDTLEETKFFIENGTYRYSSFDEVKDKVYFNESYMKQYMIG
                     LALSSFVWIAHIKVRKYFSQYLQNFTPKTTYFEIGPGHGEYFARAVKSGKFSAFYGLD
                     ISPTSCELTQKMVKQQVGELITKCDFLCQDFFTYDFDKKADLIVIGEVLEHVEKPLEF
                     LKRSKELLSDGGEIFATIPINAPAIDHIYLFSHPDEVKDLIEKSGLKFKAYECFMAND
                     YSLEKALKFKNAITMAVVLNA"
     gene            20568..20984
                     /locus_tag="SB854_000177"
     CDS             20568..20984
                     /locus_tag="SB854_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEG0956226.1"
                     /translation="MLNTTLNLPLHHIGVACKNLEKERECFFKLGFYKESEFIDEKQG
                     VRGEFIIPCNEAFPQYRFELLQNLNDKGPLDSYLKNNTKMYHLAYESKNIAQDLILLE
                     QQGGICIVPIMQASYFAKLCFIMMPNRLLIELVELK"
     gene            20981..22543
                     /locus_tag="SB854_000178"
     CDS             20981..22543
                     /locus_tag="SB854_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG0956227.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDHTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFETRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKFTGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVAQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEFEKNSALIPFQ
                     NLNFKGLIIHEN"
     gene            22533..23594
                     /locus_tag="SB854_000179"
     CDS             22533..23594
                     /locus_tag="SB854_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HEG0956228.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTVAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            23594..23815
                     /locus_tag="SB854_000180"
     CDS             23594..23815
                     /locus_tag="SB854_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG0956229.1"
                     /translation="MTKTEFLEELKEAMHRDEDLNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFTLKITAEDLKNCQKVSDLINLAKLD"
     gene            complement(23829..25046)
                     /locus_tag="SB854_000181"
     CDS             complement(23829..25046)
                     /locus_tag="SB854_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG0956230.1"
                     /translation="MLINQTFEIDSCDDVELNIKRTSKLEYRISYDDEKDIKAIVFVI
                     GGYGANANISFLDFDREYIAKNFDVVVVHVFYHCFCARISNNKKYSASISFMEEDLLS
                     LSKILLDFGINPQNLDCKNSTKYYELLIQHIITLKSQGKLAQNYQAKFTSTFIPPNGD
                     YQNYGIMAAIDHINALKDLVKRFPKFADLPKIYGGGSYGGYLALLIAKIAPWYVDGVI
                     DNSGTVLPLLECIIGKDLSRPEFFFSDLNKLVGMFIKTYWTREDERLSYFFTNENYMI
                     RSLLNSSHLTIQASVNKNIILVSYHSLKDPFNTAKDKQTLFLAYKELGYDATLHLIKD
                     ESEIDGRFIKDLNHGMRITDKALFRKELPLMLEKLQKRKSFMQENSISYPCGNKVFIF
                     KDVGDKFELVIKD"
     gene            25125..25823
                     /gene="pseF"
                     /locus_tag="SB854_000182"
     CDS             25125..25823
                     /gene="pseF"
                     /locus_tag="SB854_000182"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HEG0956231.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLISYSIENALNSGIFD
                     EVVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAVVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKDILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTIQDLE
                     FAKILYKVNHESAF"
     gene            25807..26631
                     /gene="pseG"
                     /locus_tag="SB854_000183"
     CDS             25807..26631
                     /gene="pseG"
                     /locus_tag="SB854_000183"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HEG0956232.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELDSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            26628..27101
                     /gene="pseH"
                     /locus_tag="SB854_000184"
     CDS             26628..27101
                     /gene="pseH"
                     /locus_tag="SB854_000184"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HEG0956233.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFEEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNRKALKLYQQNHFTIYDEDKDFYHICLKQSDCKALPS"
     gene            complement(27066..27812)
                     /gene="hisF"
                     /locus_tag="SB854_000185"
     CDS             complement(27066..27812)
                     /gene="hisF"
                     /locus_tag="SB854_000185"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEG0956234.1"
                     /translation="MLKTRIIPCVLLKNGQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGGQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGRAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(27813..28418)
                     /gene="hisH"
                     /locus_tag="SB854_000186"
     CDS             complement(27813..28418)
                     /gene="hisH"
                     /locus_tag="SB854_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEG0956235.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKEFGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQVPLYQGIDNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDHIFATQFHPEKSQNLGLKLLENFIRL"
     gene            complement(28415..29551)
                     /gene="pseA"
                     /locus_tag="SB854_000187"
     CDS             complement(28415..29551)
                     /gene="pseA"
                     /locus_tag="SB854_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HEG0956236.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
     gene            29807..30838
                     /gene="pseI"
                     /locus_tag="SB854_000188"
     CDS             29807..30838
                     /gene="pseI"
                     /locus_tag="SB854_000188"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HEG0956237.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALKSIKAAKKAGADAI
                     KIQTYTPDSLTLNSDKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDVEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELF
                     KICEIFKEEKNPDLIFLKCTSAYPTAIEDMNLKGIVSLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKNIESEDSKFSLDFDEFKAMVDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKDIKKGEMFSEENVKSVRPSFGLHPKFYQELLGKKATKDIEFG
                     DALKQGDFT"
     gene            30835..31806
                     /gene="legB"
                     /locus_tag="SB854_000189"
     CDS             30835..31806
                     /gene="legB"
                     /locus_tag="SB854_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4,6-dehydratase LegB"
                     /protein_id="HEG0956238.1"
                     /translation="MKNILVTGADGFIGSHLCESLIKKGFKVRALSQYNSFNFWGHLE
                     KSPFLKDMEVVSGDLRDSFFCEKITKNIDAIFHLGALIAIPYSYTAPQSYVDTNVNGT
                     LNMLEAAKKNEISHFIHTSTSEVYGTAFYVPIDEKHPLQPQSPYSASKIAADMIALSY
                     YNSFNLNVNIARPFNTYGPRQSARAIIPTIITQILSGAKEIKLGDLSPKRDLNFVLDT
                     CEGFISLLNLKHFGEVYNIGSGVEYSMQEVLNLIQKILDSKVKIIQDEQRLRPKNSEV
                     FRLCCDANKLKKATNWQSKISLEEGLRQSIEYFKENLENYKSELYNV"
     gene            31799..32953
                     /gene="legC"
                     /locus_tag="SB854_000190"
     CDS             31799..32953
                     /gene="legC"
                     /locus_tag="SB854_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase LegC"
                     /protein_id="HEG0956239.1"
                     /translation="MFEKEISFIKSLFNKENIALHEPCFIGNEKKYLLECIDSGFVSS
                     VGEFVTRFEEALKEKTKARFVIATNTGTAALHIALLANGIDENCEVITQSISFVATAN
                     AIAYTGAKPVFLDIDENTLSLSPKALEHFLENQTYQKDNLSYNKTTHKPIKACVIMHT
                     FGLSAHIKAIKELCEKYHILLIEDAAEALGSTYENKALGTFGKCGILSFNGNKIITGG
                     CGGAILSDDENLAKLARHLSTTAKIPHPYEYDHDRIAYNYRLCNINAAILLAGLENLE
                     LFLENKRELAKIYKDFFKNHDKCKFIDEKSNEKSNFWLNTLLFKDENLRNIFLEECLK
                     NNIFVRPVWKSLPSLKAFQNCQSNELINTKKLEKRLINLPSSVRIANKKE"
BASE COUNT        11518 a         5438 c         4905 g        11144 t
ORIGIN      
        1 taaattatgc tttatttttg cttaattttc aagaaaaatt atattttaaa ctgaactttt
       61 aaaatttctt ttaattcatt tatcgcttta atattttctt gaattttaaa tggctcttta
      121 aaagcaaaat caatcgtttt atcaagatgc aaataacaat gttcaggctt attaaaagct
      181 ccaaaagcaa cctttaaaag caaattctca tcttgtttat agatgctttc aaaatgcaag
      241 aaaaaatcat ctttttttat agtaatattt ttaaagttct gctctatttt tttcaaatcc
      301 tctttagaaa attcaaccga tgagagatta aattcattta actcatagtt tttacactct
      361 tggttaaaat tccacaccca aagatcatat atattttttt cttgcttttt ccatctatct
      421 tcatatttgc ttgaaatttc taaattttca ttttttctaa ggctaaattt tggagcagga
      481 aaagtcaaaa attgctctaa agtaaaatta aaatactcaa aactatctgt tctaagctca
      541 aaacgaccat tttgaactaa aaccctagca cattctttgc aaaaatcttt cccaataact
      601 cgcctatgag gctttttatc ccaaggaaca gggaaatgta aaaaaatctt ttcaactgat
      661 tttgatttta atacactcaa taacaatctc gcatcacttt ggattagcaa aatattattt
      721 acattttgtg ctttagcaag tttagccact tgagttaaag ctgggttgta aatttccacc
      781 cctaaaatta aaacatttgg attttctttt gcttgataaa gcaaatgtct tcctgatcca
      841 aagcctattt ctatataaat tttaccttga agtctagata aaagctcatc aaaattatca
      901 acgataaatg gtgttttttc aattaaagca ttatttttaa gtccaaaagc ttcattgata
      961 atatcctcac aaaaaccttc tttaaagatt tttaaagcct tttgcaaata acctatttta
     1021 gaaggttttg tatgtttatc gcctttaatc acaaaaccat tttgtgcttt tttaatctgc
     1081 agaaaaaaac tctcttcttg aacctttgta taaataagac taacattatc attcttagca
     1141 agccaaagaa attcaacatc atccttacta taaggcagat ttatttcttt gatcttttta
     1201 cttttaaaat ttggcactac tgagccgcct taactttgct tgaaggttct gaacgaagcc
     1261 cggctgaatc aatagcaata acttcataac tatattccac ccctggcaaa gcttttacat
     1321 cttttaatcg cttttcttta atgcctttaa aaactgcatt ttgctccccg ccatagcgtc
     1381 ttacttcata ctcaacagct ctagtatcat tatcactcca ttctaaattt atcccttcgc
     1441 ttgtactttg agccaaaata atactaggag ccaaagggtt gcctaaagtt ttaccttcta
     1501 caccatcttt tggcatagga ctttcaagac catctttatc caccattgtt actttataat
     1561 acttgctttt acctgctcct tctactatat cctcataaga atttttatca gtctttgcca
     1621 aaacactaaa aggaaggaag cttgagctcg tagaataaac tttataataa gaaaaatctt
     1681 catacgtagg agcatcccaa gttaaaatga ttttactaga accatctgtg ctagcactta
     1741 aatgctcaac ttgaggaggt aaagccttgc ttgtagaact tacaacttga cttgacccac
     1801 tctttatccc attaaaactc acagcaataa ttctataact tgaattttca ttaggcttta
     1861 aatcactatc gatgtattca gcgtttaaac gattttttac ttctgcaatt tttttaaatt
     1921 ctttatcatc acctttggtt ctttcaataa tataagaatc aaccctaaaa tcaggatgcg
     1981 gacgccaaat aagtttaata cgattaggca aattagtcac agcttgaaca aaaggaacag
     2041 cttcaagtct tggagctgtg ctcacttcta taaccttgcc atcttctgaa atttgtcctt
     2101 gctcattaaa gcttttcatc atataacgat acttagtacc aggctctaat ttagtatcta
     2161 cataatgagt ttgaaactta tctttaatag tgcctacaag tttaaaatca ggattttcat
     2221 cactagaacg atacaaataa aatcctttaa tattttcatt atataaaggc tcccattcaa
     2281 aagcaatatt actcatatca ctaagacttt ttaaactttc aacctttggc aagctttcat
     2341 ttacagcagg ctctttactt gaagctagcg aattcatttg cgaaacacta caagcgctaa
     2401 gcaaaagagt taaaaaactc aagtaaaaac tcaagcgaaa tcttttcatc attctctcct
     2461 aaattaattt gttcaaacat aatattttta aaatcttcca tcaaaggtgc tttaacaaaa
     2521 atttgttctt tggtttttgg atggataaaa tacaaaaaat aagcatgtaa cattatccta
     2581 caatcatact tacccttata accatacaaa ctatcaccta aaatatagcg atttaaacta
     2641 gccaaatgcg ctctaatttg atgagttctt cctgtaaaaa gcttagcagc catcaaagtt
     2701 aaattttcag tttttactac atttataaaa gctgattttg cgtttttact gaatttattt
     2761 tccttatcta tggctatttt tttaatagca ttagaaggcg aacgcattaa aaatttttct
     2821 actataattt tatcttcttt tagtggcaaa tcaattaacg caaggtaaat tcttcccatg
     2881 cttttatctg caagctgttc acttaatttt tgatgggtga aattattttt cgctattagt
     2941 atagctccgc ttgtatcttt atctaatcta tggacaagac cagctcttat ctctcctcct
     3001 aaatttgata aagtatattt tttttctatt aaccaatcca ccaaagtggc atttttaacg
     3061 ctacttgctc catgaacgac taaatttgaa ggtttattta aaacaagcaa gtcttcatct
     3121 tcgtataaca catcaatatc aaaatccact tcaaactgag gttttatctc attgcaaagc
     3181 tttaaacttg caatagaaat aatatcacca tttttaagct taaatgaatt tttatcttga
     3241 attttatcat taacctgtac acaatctttt tctataagta aagcaacttg attgcgactt
     3301 tggtttaatt ttttagccaa aaatacatca agccttgaat tttcatctac taaaaaagtt
     3361 tgcatttttt ccttagaggt tttgataaat ttaaaatttt agtttataat tatagcttta
     3421 tattaccaac tgaaggcaaa ttttgtttag attagataga agaattttaa ctcattttga
     3481 ctatatgcaa cccattttat ttttacccat aattcttatt tcatttttct taatctttga
     3541 agctaatcct tttttagcag aaaaacagtt tgtttatgcc tgtgtgggat tgtttgcttt
     3601 tatggttttt ttcttctttc ccataaggaa atttatttgg attattcctg ttgcttattg
     3661 gattaatatt tttttattgc taagcgtaga tatttttggg gttgaaaaat taggtgctaa
     3721 aagatggctt gaaattcctt ttactcactt tactatacaa ccttctgaaa tttttaaacc
     3781 tagttttatt ttaatgcttg cctatcttat ttatcaaaat cctcctccaa aaaatggata
     3841 caaacttaaa caattcatca aacttagctt ttacatcatc ttgccttttt tgctaattgc
     3901 aaaagaacct gatttaggaa gtgctatggt tttactactt gttggttttg gagtgctttt
     3961 tatcatggga gttcattata aaatttggtt aagtattgtt atagctataa gtgttagctc
     4021 tcctattatt tatacacatc ttttaaaacc ctaccaaaag caaagaattc atgattttat
     4081 ttcagaaaaa ccaagttatc aagtagccca atcaatgata gctattggaa atggtggttt
     4141 aaccggaaaa tctcaagatg aagctacgca aactcatttt aaatttttac ctatttcaac
     4201 tagtgatttt attttcgctt acatgataga aagatttgga tttattgggg gattgacatt
     4261 aattatattt tatattttac ttatttttca tctacttagt ttaaattata aacttaaaga
     4321 tgattatttt gctagagttg ctattaattg tgttgcatta tttattttta tttatgcggc
     4381 agtaaatatt tcaatgacta taggttttgc accagtagtt gggatccctt tgcctttttt
     4441 tagttatggt ggaagttctt ttactatttt tatgattttt tttggaattt tacagcattt
     4501 aatcactttt agatattttt ggacggatat aaaggctaaa taaaatattt ttaagcatta
     4561 ataagatata attttatctt ttaattcaac ttaggcggat ttatagctca gttggttaga
     4621 gcaaccggct cataaccggt tggtcgcagg ttcgagtcct gctaaatcca ccattctaca
     4681 tataagctat agactctttc tttaaaaaat aacttttagt tctttaaata tttcaatctt
     4741 atataaaaaa agtatgtgat gtgatttttt gaaagataaa gtggtggtta gaggcagaat
     4801 cgaactgccg acacgcagat tttcagtctg ctgctctacc gactgagcta tccaaccaca
     4861 atgtttgata aagtaaaaat gtaattgtat ctttttttct ttaatttaag tttaaataca
     4921 aaaataaaat tttatttccc ttaaagtttt aataagatag aatacccgct ttagatcatt
     4981 atcaaatgga aattttttga aacaatttgg actagataga cgaactttta aaattttact
     5041 agctggttat attattattg cattgtttgg ggctttattg ctacattcaa gctgggcaca
     5101 tacaactcct attgattttt tagatgcctt ttttacaagc acatctgctg ttagtatgac
     5161 aggattagta gttaagaaca ctgcggttga ttttacctta gcaggacaaa ttattatctt
     5221 agctttggtg caaattggag gcttgggata tatgggtata ggtttatttg tttatatact
     5281 catacgcaaa aaagttggtt ttagtgcaag aaatttacta aaagagtctt tattttatcc
     5341 atcaatggat ggtttattta aattttttaa aaaggttttg ctgttcattt ttactataga
     5401 attgataggt gctatacttc tcaccatgcg ttttgccctt gaaatgaatt ttaagaaagc
     5461 tttatggttt ggaatttttc attctattag cgcttttaat aattctggat ttactatatt
     5521 tgaacatgga tttatagctt ataaacatga tatagcaatt aatcttatta tcacttcttt
     5581 gattattatt ggagggcttg gatattttgt tttggttgaa ttatactttt ttcaaagaaa
     5641 aaaattgcaa aatttaagcc tacatacaaa aatggttgtt gttgcaagta tttttcttat
     5701 tttctcttca acgcttatta tttttgcttt tgaatactca aatcctcaaa ctataggaca
     5761 tttttcattt tttgataaaa ttttaagctc atattttatc gctattaatt accgcacagc
     5821 aggatttaat accttagata tgggacattt gcatgatgca agcttatttt ttggatcatt
     5881 gtttatggtt attggtggtg caccaggtgg aacagctggg ggtatgaaag taacaactgt
     5941 aatggtttta ttgctctatg cttattggag tatccgcgat ggaagagtta gaatttttgg
     6001 acatgaaatt ccaagagaaa ctatatctaa agcttttatt atagctgtag gttcagctgt
     6061 ttatatagta atagctgtta ttttgctttc cttgctagag tcaaaatttg attttatagc
     6121 cttgcttttt gaaacttctt cggcttttgc aaccgtagga atttcagtag gaaatggtgg
     6181 aactttatct ttatgcgctt tgtttagtga tcctagcaag gtgattatca tcattatgat
     6241 gctaagtggt aggataggtg tttttgcttt tttactctcg gtattcaaac aagacaaagc
     6301 tattcattta aaattccctg aaggaaaggt taatttataa aggtaaaatc gtgaaaaatc
     6361 ttaattatgg aatcatagga cttggaaaat ttggatcagt tgtagcagat gaactcattg
     6421 ctggaggtca tactgttatc gttgcggata aagatgagga agctttaaaa agtatacaaa
     6481 atcctccaag ctatgcttat attttagatt ctacaaatat ttcagcccta aaagaagcag
     6541 gctttcatga tgttgaagtt gttattgtta gcataggaga aaatgttgaa aaatcaatcc
     6601 ttactcttat ggcgcttaaa gatataggtg ttaaaaatat cattgctaaa gcaacctcta
     6661 atatccatgg tcaaattctt tctaagttag gtgcaacaaa ggttatttat cctgaaaaag
     6721 aaagtgctaa aagactagta aaagaatttt taactaaaga tgctgattat gaagtttttg
     6781 atctttcagc aaatactata cgagctatta agatcaatat agatgaaaaa ttagcaggaa
     6841 attctttaaa acatgtagca caaaatatga aagtgatttc ttataaaaaa ttaaatagcg
     6901 actgggaaat actacctgat ttagaaacca cgacagttta tagtggagat gttgtaatac
     6961 tccttggaac agttaaagaa cttagagaat ttgaacacta agcaagattt aaagccttgc
     7021 aagcctttac aaaacgcttt aaggctgttt tttctttggt agaaatttta tgatatataa
     7081 cttcatctaa ataatatcta acatctttta tatctaaatc ccttgttttg gcatattttt
     7141 gaagtatata atagggaatt ttaatctttg tttttggaaa ttttttcaaa atttgtttat
     7201 ataaagcttt tttttgcaca caagaaaatc tagcaaaaac aaaaggcaat cctgtttttt
     7261 cgtgccattt tgcacataaa tcgatatatt tagaaggatc ttttagataa agctttaaag
     7321 ccttatcgcc tataattact tttccatctt gttttaatac tttagctaaa gcatttgaag
     7381 ttgctgaact tggatctttg gcatttaatg tatttttttc taccaaaaca cttaaaactc
     7441 ttttattggc acaaataccc aaatctaaat ttttatattt ttttctagcg ctttctatgc
     7501 ttgaaatgat agctgcatca attcttctat aaaataaatc tttatttagc ttacttggaa
     7561 ctcctttttt atgctccata cttgctttaa aaccattagg taaaggatat ttcttaagat
     7621 atatatgcaa aggcaaaaga ttaatataat caatttttcc aaaaatcatc tcttttaaag
     7681 agtgttaaac actctatctc ctgcatctcc aagccctggg ataatataac ctttttcatt
     7741 taaaccttca tcaatacaag ccacaaaaac ttctacatca tcatgcattt ggctaaattt
     7801 ttgcaaacct tgtaaagcag caagtatgga tataaatttt atttttttaa ctccttggct
     7861 ttttaaaaaa ttacaagcct ctatagcagt cccacctgta gcaaacatag gatctataac
     7921 aatagcggtg cgtttttttg catctttggg aagtttttga aaataaaaat ccgcctttaa
     7981 agtctcttca tttctcacaa accccaaaaa tccaacactt gcatcaggaa tcatcttaaa
     8041 aacactttca agcattccta atgcagctct taaaatagga caaatcataa tcttttcatc
     8101 aagttttttt actatagttt tttgtatagg tgttgaaatt tcaatttctt ttaaagaaaa
     8161 atctttactc acttcaaaaa gcaaaaaaga tgaaatttca tcgattaaca tacgaaattg
     8221 aaagggcttt gtctctttag cccttaaaat tcctaactta tgttcgatca atggatgatt
     8281 gatacaatga atatttttca ttttaagctt tcaaaataag ctttctcgtt aaaatttttt
     8341 accttagcca caccatcttt taccgcagct gctgctacag ctgtacttac tgcagctttt
     8401 actctttcat caaaaggttt tggtatgaca taatctcttc caaattctaa ggtacttaaa
     8461 ttataagcct ttttaactgc atcacttaca ggaagttttg caagatctgc taatgcttta
     8521 gcagccgcta ctttcatatt ttcagtgatt ttacttgcac gcacatctaa agccccacgg
     8581 aaaataaaag gaaaacctaa aacattattg atttgatttg gataatcact tcttcctgtt
     8641 cctacaatcg catcttttct aagtctagct acatcttcag gcatcacttc aggaatagga
     8701 tttgccaaag caaaaatcac aggatctttt gccatgctta aaaccatttc atcatcaaga
     8761 atttttggtg cactaagtcc taggaaaaca tcagctcctt ttaaaacttc ttttaaagtc
     8821 ttttccttag aatcaacagc aaattcaagc ttttgaggag ttaaatcatt tctatcttta
     8881 gaaatcactc ctttgctatc tactaaaata atattttcga cccctaaatt tctatacatt
     8941 ttagcacttg ctatacctgc agcacctgca ccacttacaa ctactttgat gtctttaaat
     9001 tttttaccac ttatttccat agcattcata agtcccgcag ttgaaataat agccgttcca
     9061 tgttgatcat catgcattac aggaattcct aaatcttgca aagccgcttc aatttcaaaa
     9121 cattttggcg cagcaatatc ttctaaattg atcccgccca cagttggagc caaagacttg
     9181 caaaaattta caatctcttc tatactatga acatcaattt ctatatcata agcattgaca
     9241 tttgcaaatt ttttaaacaa acaagcctta ccttccataa caggttttga agcctgtgct
     9301 cctatgtttc caagtcctaa aacagcagaa ccatcactaa ctatagctac taaattagcc
     9361 ttatttgtat aagtataagc aagctcatta tctttagcga tttcaaggca aggttctgca
     9421 actcctgggc tatacgccaa agatagatca tggcttgtag ccattggctt acttggtaca
     9481 atatcaattt tcccacctaa atggtatttt aaagcttctt cttttaaatt cattttattt
     9541 tcctctaact tttaaaaaat tttctattct ttttttgcac tcatcaacct ctaaaaattc
     9601 taatacttca aaaatactag gacttaccgc actccctgtt aaagctatgc gtataggctg
     9661 agccaaatct tttaactttg cttctttttt ttctaaaaaa tcatttgtaa aatcttcaaa
     9721 atctttacct gttttttgat ctttaagtgt attagcaaat gcttggagca attctaaatt
     9781 atttttgtta ataaattttt gtactgcatt ttcatcataa ttttgcggcg cattaactat
     9841 actttttgca ccattgataa tatcatgcaa ggtttttgca cgctctctta ataaatcaag
     9901 taaaaatcct gccttttcat aaacagataa atcaaagcca agatccttaa gctgacggtt
     9961 aatctcttca aaaggcaaag ttttaatgta atgagcgtta agccattcaa gctttttagc
    10021 attataacaa gatgcgcttt tattaatatg ataagggtca aaaagttttt tcaaatcttc
    10081 taatgaaaaa acctcatcat caccatggct ccaacctaaa cgcacaagaa aattaagcaa
    10141 agcttgaggt aaaattccca tttctttgta ttccataaca tcagttgccc catgtctttt
    10201 tgaaagcttt ttaccatctt ctccatgtat catagccaca tgaaaaaatt taggaatttt
    10261 aaaacccaat gcctcataaa gcacaatttg tttaggagta tttgaaagat gatcatctcc
    10321 gcgaatcaca tcacttaccc ccattaaagc atcatcaata acaacagtaa aattataagt
    10381 tggagttcca tcacttcttg caatgataaa atcatccatt atatcctctg ctttaaatct
    10441 cacctcgcct ttaaccccat cttcaaaaac aatctcgcca ctttgaggcg ctttaatacg
    10501 cacaacaggt tctataccct gaggtggcgt gcctgtaaat tctctatatc ttccatcata
    10561 tcttgggcgt tctttggcgg cttcttgctt ggcacgcaat tcttctaatt cttctttact
    10621 catataacaa taatacgcct tgccttcatc taaaagcttt ttgacatatt ctttataaag
    10681 atcaaaacgc tctgattggt aagttacttc tccatcatgt tctaaaccgc accatttaaa
    10741 agcttcgata attgctttag tagcttcttt ggaatttctt tttaaatccg tatcttcgat
    10801 acgaagtaaa aaatttccac cattttttct agcgtataaa taattataaa gagctgttct
    10861 aagtccacct atgtgcaaat accctgttgg gcttggagca aaacgcgttg taagtttttc
    10921 gtgcattttt tgccttttct taaattttta ttgatataat gcgatattta tacttaaata
    10981 aaggtttgaa atgaaaaaaa ttttattaag ttttgcattt tttgcaagtt tagctagtgc
    11041 aaataccatt aatgctatag ctgtagttgt agataaagag cctatcacaa cttatgatat
    11101 agatcaaact atgaaagcac ttaaaattga tagaaataaa gctttaggcg tactcatcaa
    11161 tgaaaaaatg gaaatttcac aaatgaaaca actaggtatt gtagtcaatg atctagagct
    11221 tgatgatgct ataaataaaa tgcttgctca aaacaaaacg actttaaatg ctttcaaagc
    11281 aaatttaaaa tccaaaaatc aaagctatga acaatttcgt gcaaatttta aaaaagattt
    11341 agaaaaaaga aagctttatg aaaaaatcgc aagtatggca aaaactgatt ttagtgatga
    11401 tggagcaaaa aaatttttcg aacaaaataa agataaattc actttttata cacaaattaa
    11461 tgcaaatatt tatctatcaa acaatcctca aactttagaa aatatcaaaa atacaaaaaa
    11521 aacaatcctt aaaccacaaa atgcatcttt aaacacaagt aatgccgatc caagactttt
    11581 agggctttta tcacaaattc ctgttggagg cttttcccct gttttaaatg gaaaaaatgg
    11641 ctatgaactc tatgaagtta aaagcaaaga tggggcacaa actcctgaat atgaacaagt
    11701 taaaaatgaa gttttaaacg cttatgtaag cgaacaaaga caaaatttca tacaggatta
    11761 ttttgataaa ctccgctcta aaatcaatat agaatattta agataaaaat tacaattaaa
    11821 atttcccttt aatagggaaa ttttaatgtc ttgcaagata atttgtatcg tagttattat
    11881 taataaaatc aggattttcc atcatagaaa gatgaaaatc tttggttgtt tttatcccac
    11941 ttataagcaa ctcatctaaa gctactttca tttttgcaat agctttatta cgatcttctg
    12001 cccaaactac aagtttgcct atcatagaat cataataagg aggcacgcta tagtcttgat
    12061 aacaatgact ttccattctg acattgcgtc ctgcgggtgg aatgtattta gtaatcttac
    12121 ctggacttgg caagaaagtt ttggaatctt cagctgtgat tctacattct atagaatgcc
    12181 catttaattt aatactttct tgagatggta aagcataacc ttctgctact ttaatcattt
    12241 gttctatgat atcaatctca cttaccattt cacttacaca gtgttcaact tgcaaacgcg
    12301 tattcatttc tataaaataa aaatccaaat ttttatctac caaaaactca aaagttcccg
    12361 caccttcata tcctatagct ttagctgcct taatagcagt ttcatgaagt ctagtgcgtg
    12421 ttttttcatc aagcaaaatc gcaggggatt cttctataag tttttgatgg cgtctttgca
    12481 tagaacaatc tctttcgccc acatgaatca cattgccaaa actatctcct ataacctgca
    12541 cttctatatg gcgtggattt tgtatgtatt tttccatata catagttcca tcgccaaatg
    12601 ctgtcatagc ctcgctttca gccgaccaat acgctttttc aagatctttt tcattttcaa
    12661 ccacacgcat accacgacca ccaccacctg cagctgcttt taaaatcaca ggataaccta
    12721 tttctttggc aagtttttta gctgcttcag ctcctgccaa agccccatcg cttcctggga
    12781 tcacaggtac gcctgctctt tgcatgactt gttttgcttt tgatttatca ctcattaaat
    12841 tcatagcttc cacagaagga cctataaatt tgatgttatg tttagcacaa atttcaacaa
    12901 aattttgatt ttcacttaaa aatccgtatc ctggaaaaat cgcatctgct tcagcaattt
    12961 cagctgctgt aataatagct gggatattta aatagctttc agaacttctt gctttgccta
    13021 tacaaatgct tgcatcagcg tattttaaat acaaagcatc tttatctgct tcagaataca
    13081 cacaaattgc ttttttaccc atttctttaa tcgttcttaa agcacgcagt gctatttctc
    13141 cacgattagc aattaatatg cttttaattt ccattttata atttctccac cgcaaataaa
    13201 ggcattccaa attctacagg ctgaccatca gcaactaaaa tttcagcgat tctacaatca
    13261 aattccgctt caatttcatt catgattttc atcgcttcga taatagctat agtatcgcct
    13321 tttttaaccg tactacctac ttttacaaaa ggtgctgcac ctggacttgg agcttgatag
    13381 aaagttccta ccatagggct gtttatactt ggtttgtttg attttacact ttgactaggt
    13441 tgagcttcgt ttacaacgct tacattgata ggttgtggag ctggaactgg aggacaaaca
    13501 ggagctggaa cgtcacaaca catatctctt tcaagttcta tttcaaaacc atcttgttct
    13561 ttgatcttaa ttttactaat atttgcttca gcaaaaaggt ttactaactc tttaatttct
    13621 tcttttgtca taaaattctc ctaaaattta agaacttaat cttgtattat ataaaaaaac
    13681 ttaaaattta actttaaaaa agaaaaaaat cataaaaaat atagattttt taggttataa
    13741 tccttacaaa aaattacaaa tattaaaagg ttaaaaatgg gtttaaaagc agataattgg
    13801 ataagaaaaa tggcattaga acacaagatg atcgaaccat tttgcgaagc aaatatagga
    13861 aaaggtgtgg taagctatgg actttcaagc tatggttatg atatacgtgt agggcgtgag
    13921 tttaaaattt ttaccaatgt taattcaact gtagtggatc caaaaaattt cgtagaagaa
    13981 aatgtagtag attttgaagg cgatgtatgt atagttcctg caaattcttt tgccctagct
    14041 agaactatag agtattttaa aatgcctgat gatgttttag ctatttgcct tggcaaaagc
    14101 acttatgcaa gatgtggcat catcgtcaat gttactcctt ttgaaccagg ttttgaagga
    14161 catatcacta tagaaatttc aaatactacg cctttacctg caaaaattta tgctaatgaa
    14221 ggcatagcac aagtgttgtt tttacaaggc gatgaaaaat gcgacaccac ttacaaagat
    14281 aaaaaaggca agtatcaagc tcaaacgggc ataaccttgc caagaatttt aaaataggaa
    14341 cacttattgc tttaatttta aaaaaactta agcaaaggaa ggcaaaatgt ttaacaaaaa
    14401 aaatatctta atcacaggcg gaacaggctc ttttggaaaa acctatacta aggttttgct
    14461 agaaaattat aaacctaata aaatcatcat ttattctcgt gatgagctta aacaatttga
    14521 aatggcaagc gtttttaacg ctccttgcat gcgttatttc ataggagatg taagagacaa
    14581 agagcgttta agcactgcta tgcgtgatgt ggattttgtt atacatgctg ctgcgatgaa
    14641 gcatgtgcct attgctgaat ataaccctat ggaatgtata aaaacaaaca tccacggcgc
    14701 gcaaaatgtc atcgatgctt gttttgaaaa tggggttaaa aaatgtatcg ctcttagtac
    14761 ggataaggct tgcaatcctg taaatttata cggtgcaacc aaacttgcaa gcgataagct
    14821 ttttgtcgct gcaaacaaca tagcaggtaa caagcaaaca cgctttggtg ttacaagata
    14881 tggcaatgtt gtaggttcaa gaggttcagt ggtgcctttc tttaaaaaac tcatcagcga
    14941 aggagctaaa gaacttccta tcaccgatac gagaatgact cgtttttgga tcagccttga
    15001 agatggagta aaatttgtac tgagtaattt tgaaagaatg catggaggag aaatctttat
    15061 ccctaaaatt ccttcgatga aaatcaccga tctagcccat gctctagctc ctaatttaag
    15121 ccataaaatc ataggcataa gagcaggaga aaaactacat gaaatcatga tttcaagcga
    15181 tgatagtcat ttaacctatg aatttgaaaa ctactatgct ataagcccga gtattaaatt
    15241 tgtagataaa gataatgact ttagtatcaa tgccataggc gaaaaaggac aaaaagtaaa
    15301 agatggtttt tcttatagtt cggataataa tcctttatgg gcaagcgaaa aagaactttt
    15361 agaaatcatc aatcacaccg aaagttttta aaatgcttac ttattctcat caaaacatcg
    15421 atcaaagcga tatagatacg cttaaaaaag ctctaaaaga tgaaatttta acagggggta
    15481 aaaaagtaaa tgaatttgaa gaagcccttt gtgaatatgt gggtgtaaaa cacgcttgtg
    15541 tattaaactc agccacttca gcccttcatc ttgcctacac agcactaggc gtcaaagaaa
    15601 aaatcgtttt aaccacccct ttaaccttcg ctgctacagc taatgcagcc ttaatggcca
    15661 aagctaaaat agagtttatc gacattaaaa acgatggcaa tatcgatgaa aaaaaactag
    15721 aagcaagact tttaaaagat agcaaaaata taggagctat tagcgtggta gattttgcgg
    15781 gcaatagcgt tgaaatggat gaaatttcaa accttgctaa aaaatacaat attcctttaa
    15841 tcgatgatgc aagccatgct ttaggtgctt tgtataaaag tgaaaaagta ggaaaaaaag
    15901 ccgatctttc tatcttttct tttcaccctg ttaagcctat cactactttt gaaggtggag
    15961 ctgtggtaag cgataatgaa gagcttatcg ctaaaatcaa acttttaaga agtcatggca
    16021 tcgttaaaaa aaggctttgg gatagcgata tggtagaact tggctataat taccgcttaa
    16081 gcgatgttgc ttgtgcttta gggataaacc agcttaaaaa actcgatcac aatcttgaaa
    16141 aaagagaaga aatcgcaagt ttttacgata aagaatttga aaaaaatcct tatttttcca
    16201 cgataaaaat caaagactat aaaaaaagct cgagacattt atatcctatt ttgctttttc
    16261 ctgagtttta ttgtcaaaaa gaagaacttt ttgaaagctt acttcatgca ggaattggcg
    16321 tacaggtaca ttataaacca acttatgagt ttagttttta taaaaaactc ttaggagaaa
    16381 taaaacttca aaatgcggat aatttttaca aagccgagct tagcatacct tgtcatcaag
    16441 aaatgaatct aaaagatgca aaatttgtaa aagatacttt atttagcatt cttgaaaaag
    16501 ttaaaaaggg atattgtgaa taagctagac tttagaagcc aagattttag ccaaactgga
    16561 aaggctatgt atgaactagc ttgcgaactt tttcctatcc ctagaagcat cacagggcaa
    16621 ggttttagag atagcttaga aattttaaat aaaactctgg gcgggggggg gatactcaaa
    16681 tttcactcta taaaaagtgg cacaaaggtt tttgactgga tagtccctga tgaatggaac
    16741 gccaaagaag cctatatcat cactccagaa ggagaaaaaa tttgtgattt taaaaagcat
    16801 aatttacacc ttctaaatta tagcgaagct atcgataaag aaatcgaact tgaagaactt
    16861 caaaatcatc tttactccat agaagaaatg cccgatgcta ttccttatgt aacgagttat
    16921 tacaaaagac gttggggatt ttgtctcacg cataatgaaa gaaaaaaact caaaaaaggc
    16981 aaatacaaag tctatatcaa tgcgaaacat gatgaaaatg gagttttgga ttatgctgat
    17041 tttatcctac ctagtacgca aaattcaaaa gatgaaattt taatttcaac ctatctttgt
    17101 catccttcca tggcaaataa tgagcttagt ggtcctgtgg tggctatttt cctagcaaaa
    17161 tggcttttga gtttaaaaga aagaaagtat aattaccgct ttgtcatcat tcctgaaacc
    17221 ataggctcta tagtctatct tagcaaacat ttagagcatt taaaaaaaca tgttaaagca
    17281 ggctttgtgc tttcttgctt aggcgatgat catgcttact cactcataca cacacccaaa
    17341 aaaaacactc taagcgataa agttgccttg catacgctta aaaataaaaa aaatttcaaa
    17401 gcttttagtt ttttagatcg tggaagcgat gaaagacaat acaatgctcc gcttgtaaat
    17461 cttggcatag taggggtatg tcgcacaaga tacctagaat acgaacaata ccacaccagc
    17521 aaagatgatc tcaattttat ctctgaaaaa ggtttaatgg gtggacttca aagcatacaa
    17581 gaaatgattt taaatctaga aatcaacgct gtatatgaaa acaccatagt atgcgaaccc
    17641 aatcttggta aaagaggact atatcacacc cttagcactg ctaatgacat tcctttggct
    17701 tgtaattttt tggcttactg tgatggggaa aatgatatca tcgatatagc caatatctta
    17761 aatatgcaag cttatgaatt taaagaactt ttggaaaaaa taaaatttta tggactggta
    17821 aaatgaaata ttttttagaa cacaatggca aaaaatactc cgataaggat ttaatagatg
    17881 ctttttatca actaggtata aaaagaggcg atattttatg tgtacataca gaacttttta
    17941 aatttggcat acctttgctt tctagaaatg aatttttaca gactatactc aattgttttt
    18001 ttgaagttat aggtcaggaa ggcactttga tcatgccaac ctttacttat agtttttgca
    18061 aaaatgaaac ttatgataaa gtgcattcta aaggcaaagt gggagtgctg aatgaatttt
    18121 ttagaactag cggggggggt taggcgaact agcgacccta ttttttcctt tgctgtgaag
    18181 ggtgctaaag cggatatttt tttaaaagaa aactcaagct gttttggaaa ggatagtgtg
    18241 tatgaaattt taactaggga aggtgggaaa tttatgcttt taggcttgaa ttatggacac
    18301 gccctaacgc attatgctga agagagaaat accagctttt gcaggtattt taaggaattt
    18361 aagggcttgg tgattgacga gctaggacaa aaaagagaaa aaaggataaa ttattatgta
    18421 agagacttgg aaaaagccta tgtatgcagc cttgataaga taaatgaaat cgtgcggcaa
    18481 acaaggtatt acaaaagcat aaaatttgca ggagattttc tagaaagcta tgatgctaaa
    18541 gaatatgtca aagccatagg caacgccctt aagcaggata aatttgccat atatgaaaag
    18601 cttcttttat gaaaaatatt taaaggtagt ttatgaaata tttacttgaa tttgaaaata
    18661 aaaaatactc cacttacgac ttcatagaaa ctttttacaa actaggacta caaaaaggcg
    18721 ataccttgtg tgtgcatact gaacttttta atttcggttt tcccttgctt tctagaaatg
    18781 aatttttaca gactatatta gattgttttt ttgaagttat aggcaaagaa ggcactttga
    18841 tcatgccaac ctttacttat agtttttgca aaaatgaagt ttatgacaaa ataaattcca
    18901 aaacaaaaat gggagcatta aatgaatatt ttcgcaaaca aacaggagta aaacgcacaa
    18961 acgatcctat attttctttt gctataaaag gagcaaaaga agaattattt ttaaaagata
    19021 caacaagttg ttttggggaa aattgtgttt atgaggtttt aaccaaagag aatggaaaat
    19081 atatgacatt tggaggccaa ggacacacac taacacatta tgcagaagaa caatttaatg
    19141 tattttacag atatcataaa attttctctg gaattttaat tgatgaaaac aatatatcat
    19201 acaataaaac cattagttat tatgttagaa aacttgacat atcttctgag cccaatttaa
    19261 ttaacattat caatattgtt aataatacta aaaattttaa aaaaaacaat tttgcaggag
    19321 atcatataaa tatttacaac gctaaagaat atatagaaat tttatggaaa aaattagata
    19381 taaaccaaac aattctaata gaaaattatg atacaatata ttaattttca acattctcaa
    19441 gaaagtggta tacaatggaa aaacaatttt atgaaatttt agaaaatata cttgaaacca
    19501 aagtagatga aaatacaaat ttaagcatgg aaaactgcaa gaactggact tctttagctc
    19561 atattgatat catcatgagt ttagaagaag aatttgaaat caaattcaac aaagaagatt
    19621 taagtctctt aaaatctcaa aacgctttac tagaaaaaat tcaaacccta aaggcagaaa
    19681 aatgaaagaa aatattgaaa aattatttca agccatcgct caaaaaaatc ctatccattc
    19741 taaatatctt aaaaaaattg aattttcaca agaagacgaa gaggaatttg ataaattaat
    19801 ttcttattat attcaagatg gtatcagcat agaagaacaa tgcgattgtt atttattgat
    19861 ccttaacgat actttagaag aaacaaaatt tttcatagaa aatgggactt atcgttattc
    19921 tagctttgat gaagttaagg ataaagttta ttttaatgaa agctatatga aacaatacat
    19981 gataggccta gctctttctt cttttgtttg gatagctcat attaaagtga gaaagtattt
    20041 ttcacaatat ttgcaaaatt tcactccaaa aacaacttat tttgaaatag gccctggcca
    20101 tggagaatac ttcgcaagag cagttaaaag tggtaaattt tcagcctttt atggacttga
    20161 tatctctcca acgagttgcg aacttactca aaaaatggta aaacaacaag taggagaatt
    20221 gattacaaaa tgcgattttt tatgtcaaga tttttttact tatgattttg ataaaaaagc
    20281 tgatttgata gtgattggag aagtgctaga acacgtagaa aaacctcttg aatttcttaa
    20341 aagatctaaa gaacttctta gcgatggagg agaaattttt gcaactatcc ctatcaatgc
    20401 tcctgctatt gatcatattt atttattttc ccatcctgat gaagttaaag atttgataga
    20461 aaaatcaggc ttaaaattta aagcttatga atgttttatg gcaaatgatt atagtttgga
    20521 aaaagcattg aaatttaaaa atgctatcac tatggcagta gttttaaatg cttaatacaa
    20581 cactcaattt accccttcat catataggcg tggcttgtaa aaatttagaa aaagaaaggg
    20641 aatgtttttt taaactaggt ttttataaag aatcagaatt tatagatgaa aaacaagggg
    20701 taagaggcga atttatcatt ccttgtaatg aagcatttcc acagtataga tttgaacttt
    20761 tgcaaaattt aaacgataaa ggaccactag atagctattt gaaaaataat accaaaatgt
    20821 atcatttagc ctatgaaagt aaaaatatcg cccaagattt aattcttttg gaacaacaag
    20881 gaggcatttg tattgttcct attatgcaag caagctattt tgctaaactt tgttttatca
    20941 tgatgccaaa taggctttta atcgaacttg tggagctaaa atgaatcttt tttcacccca
    21001 tttaaaacgc aatgagctta taaaattcgc caaagaatta gactttagca aaagtcaaga
    21061 tcttcttatt aatgtccata gaaatcatgc ttttgaagga gtgcaaagta tcattgctcc
    21121 ttttttacat tttgctaatt taagagctga gtttaatttc agctcttatg atgatagctt
    21181 gagttttgat aactttaaag aagctagttt agaactttta tggctagatt taacccgcta
    21241 taaaaataat gtgcaaaatt ttatagaaga aagactttta gaactaagaa aaatttcaca
    21301 aaaccctatt ttagttctta gtttaggaga atttaaaaca gataaaaaaa ttttaaattg
    21361 tgaaattttt aacatagaaa aactcataaa agagtatttt gatgaagaag atattttaga
    21421 cctagctaaa gaagaactta caggctctaa gcttaataat aaagccttga tttttttagc
    21481 acaaatttta ggacttagcc tcatccctgc actcgtaaaa cccgctctta aagctcttgt
    21541 acttgatctt gatcatacct tgtatcaagg aattttaggt gaagagggta tagataatct
    21601 taatttaagt cctttgcaca aaaccttaca agaaaaaatt aaaactttta aaaaacaagg
    21661 ctttttactt gccctagctt caaaaaatga agaaaaagac gcaaaaaaac tttttgaaac
    21721 aaggaaagat tttatcttac aatgggatga ttttgatgct agaatgatca attgggaacc
    21781 aaagggtgaa aatatcttaa aaattgctaa aaaatttaat ataaatacta acgctatgct
    21841 ttttatagat gataatatcg ccgagcttga aaataccaaa tttacaggcg ttaaaacact
    21901 tttatgcgat gaaaatatac tttataaaat caaacttttt cctaatcttt taaaactttc
    21961 aaataccaaa gaagatcaaa ttcgtgccaa agatatagca gccaatgctt taagagaaga
    22021 gcttaaaagc ttaagcgatg aagaatattt tcaaaatctt gaaatcagct taaattttag
    22081 caaaaatgat ctgcaaaata tccctcgcat tagcgaactt ttaggcaaaa ccaatcaatt
    22141 tatcgctaat tacacacgct taaatcaaga aaaagtcgca caacacatgc aaaaagaact
    22201 cattgtaagt gtgagtatga gtgataaatt aagcgatagt gggattatcg ctatttttgt
    22261 tttttcttgt aaagaaggaa atttatttat cgatgatctt tgcatttctt gtagggcttt
    22321 aggtagaaaa cttgaaacta gaatgttttt taaagccttt gaactagctt tacatttctt
    22381 tgatcttaaa aacaataatg caaggcttta ctatcaaaaa ggcgaaagaa atatgccatt
    22441 tttgagcttt ttagaacaaa tttccaaaga atttgaaaaa aactcagccc ttattccatt
    22501 tcaaaattta aacttcaaag gacttataat ccatgaaaac tagatttgat aaagctaaaa
    22561 tttcaggcat ttgcgtaagc gtacctgaac ataaaatttg cattgatgat gagttagaaa
    22621 gcgttttttc aaacgatatc aaaaccctta aaagaatgaa aaaagtcata ggtttaaaca
    22681 cgcgttatat ttgcgatgaa aacacttgcg taagcgatct tggaaaacac gcagccaata
    22741 cacttttaca aggtttaaat atagataaaa atagccttga tgcactcatc gtagtaactc
    22801 aaagtcctga ttttttcatg ccttctacgg cttgttattt acaccaactt ttaaatttaa
    22861 gctccaaaac tgtagctttt gatttagggc aagcttgtgc agggtattta tacggcttat
    22921 ttgtcgctca ttctttaata caaagtggct taggtaaaat tttactcatt tgtggagata
    22981 ctttaagcaa attcatccac cctaaaaata tgaatttagc tcctattttt ggtgatggag
    23041 taagtgcaac tttaattgaa aaaacggatt ttaacgaagc tttttttgag cttggaagcg
    23101 atggaaaata ttttgataaa ctcatcattc caaaaggtgc gatgagaata cctaaagcag
    23161 atattttcaa cgatgattca ctcatgcaaa ctgaggagtt tagacaatta gaaaatcttt
    23221 atatggacgg agcaaatatt ttcaatatgg ctttggaatg cgaacctaaa agctttaaag
    23281 aaattttaga attttctaaa gtagatgaaa aagacattgc ttttcatctt tttcatcaat
    23341 ccaatgcgta tttggttgat tgcatcaaag aagaattaaa acttaatgat gataaagttc
    23401 ctaatttcat catggaaaaa tacgctaatt taagcgcttg ttcactacct gccctacttt
    23461 gtgaactaga tactccaaaa gaatttaaag cgagtttaag tgcttttggt gcagggctta
    23521 gctggggaag tgcggtgttg aatttcaaag atttatacac aaaagatatt ttaatttaca
    23581 caaaggagaa ataatgacaa aaactgaatt tttagaagag cttaaagaag ctatgcatag
    23641 agatgaagac ttaaacgagg atatgctact tgatgatata gatgagtggg atagtttggc
    23701 ttttgtatct gtgatggtgc tttataaaaa tctttttact ttaaaaatca cagccgagga
    23761 cttgaaaaat tgtcaaaaag taagtgattt aatcaattta gcaaagcttg attaaaacct
    23821 ttaaggtttt aatcttttat cactaattca aatttgtcac ccacatcttt aaatataaac
    23881 actttatttc cacaaggata agagatggaa ttttcttgca tgaaagattt tcttttttgt
    23941 agtttttcaa gcattaaagg aagttctttt ctaaataagg ctttatcagt aatcctcata
    24001 ccatgattta aatcttttat aaatcttcca tcaatctcac tttcgtcttt tattaaatgt
    24061 aaagtggcgt catatcctag ctctttatac gctaaaaaaa gagtttgttt atcttttgct
    24121 gtattaaatg gatcttttaa actatgataa gatactaaaa taatattttt attgacacta
    24181 gcttgtatag ttaaatggga agaatttaac aaagaacgaa tcatataatt ttcattagta
    24241 aaaaaataag ataatctttc atcttctcta gtccagtacg ttttaataaa catgcctacc
    24301 aatttattta aatcactaaa aaaaaattcg ggtctactta aatcttttcc tattatacat
    24361 tccaataatg gcaaaacagt tcctgaatta tcaatcacgc catccacata ccaaggagct
    24421 atctttgcta tgagcaaggc taagtatcct ccataagacc cccccccata aatttttggt
    24481 aaatctgcaa attttggaaa gcgtttaact aaatctttta aagcattgat atgatcaata
    24541 gctgccataa tgccatagtt ttgataatct ccattaggtg ggataaaagt tgaagtaaat
    24601 ttcgcttgat aattttgcgc taattttcct tgtgatttta aagtaataat atgctgaata
    24661 agcaattcat aatacttggt agaattttta caatcaagat tctgtggatt aatgccaaaa
    24721 tctaacaaaa tcttagatag acttaacaaa tcctcctcca tgaagctaat agaagcacta
    24781 tactttttat tatttgatat tcttgcacaa aaacaatgat aaaaaacatg taccactaca
    24841 acatcaaaat ttttagcaat atattcccta tcaaaatcta aaaaagaaat atttgcatta
    24901 gctccataac ctcctatgac aaaaactatg gctttgatat ctttttcatc atcatagcta
    24961 atgcggtatt caagtttgct agttcttttt atatttaatt ctacatcatc acaagaatca
    25021 atttcaaagg tttggtttat aagcaatttt aagcctttta ttgtatttta aagacaatta
    25081 tacttaaatt ttagtaaaat aaaacacaaa aacaaggctt aactatgaaa aatctttgca
    25141 taatccctgc tcgtggtgga tcaaaaagaa ttcctagaaa aaatatcatt gattttctag
    25201 gtaaaccttt aatctcttat agcatagaaa atgctttaaa ttcaggtatt tttgatgaag
    25261 tggtgctttc aagcgatgat gaagaaatca tagaagtagc cttaaaatac ggtgcaaaag
    25321 ctccttttgt gcgtgataaa aatttaagcg atgattatgc ttcaagcact gctgtagtgc
    25381 aaaatgccat agaaatttta caaagccaaa atcaaattta tgatcatgtc tgctgccttt
    25441 atgctactgc tcctttgtta aataaagaca ttttaaaaca agcctatgaa aaatttatac
    25501 aaaatcaaag caagttttta tttgctgcta ctgagtttga gtatcctata caaagggcat
    25561 tttatctaaa tgaaaacaat caagtttata tgtttgatga aaaacattat aaaagtcgtt
    25621 cacaagatct aacaaaagct tatcatgatg caggagcttt ttattttggt acaagcaaag
    25681 cttggcttga ggaagatttt atatttaaac ctcattctag cgtgtttgta ttgccaagaa
    25741 atttagtttg cgatatagac accatacaag atttggaatt tgcaaaaata ctttataagg
    25801 taaatcatga aagtgctttt tagaagcgat agctccagtc aaataggctt tggacacatt
    25861 aaacgtgatc tagtcttagc taaacaatat agcgatgtaa gttttgcttg tttgccttta
    25921 gaaggctctt tgatcgatga aattccttat cctgtttatg agcttgatag tgaaagcatt
    25981 tacgaactta tcaatctcat caaagaagaa aaatttgaac ttcttatcat tgatcactat
    26041 ggcatcagcg tagatgatga aaaactgatc aagcttgaaa caggggtgaa aattctaagc
    26101 tttgatgatg aaataaagcc tcatcattgt gatattttac tcaatgtcaa tgcctatgca
    26161 aaagcaagtg attatgaagg tttagtgcct tttaaatgcg aagtaagatg tggtttttct
    26221 tatgctttaa tcagggaaga attttatcaa gaggccaaag aaaatagaga aaaaaaatat
    26281 gattttttca tttgcatggg tggaactgat ataaaaaacc tttctttaca aattgctagc
    26341 gaattaccta aaacaaaaat catcagcatt gcaaccagct cttctaatcc taatcttaaa
    26401 aaattgcaaa aatttgcaaa attacataac aatattagat tatttatcga tcatgaaaat
    26461 attgcaaaat tgatgaatga aagcaataaa ctcatcatta gtgcaagttc tttagtcaat
    26521 gaagccttgc ttttaaaggc aaatttcaaa gctatttgtt atgttaaaaa tcaagaatct
    26581 acagcaactt ggcttgctaa aaaagggtat gaagtggagt ataagtattg ataaaactta
    26641 aaaatttcac agaacttaat tctcaagaaa tagagctgat ttttaaatgg cgcaatcacc
    26701 ccgatatcaa tcaatttatg aaaacaaaat atattgattt tgaagaacat ttaagatttt
    26761 taaaaaaatt acatcaagat tctagcaaaa aatatttttt agtttttcaa gatgaacaga
    26821 ttatcggcgt aattgatttt gtcaatatca caactaaatc ttgcgaattt ggactttacg
    26881 caaaacctaa tttaaaaggc gtaggacaaa ttttaatgaa tgaaattata aaatacgctt
    26941 ttgaaaactt aaaagtaaat actcttaaag cttatgtttt caaagacaat cgcaaagctt
    27001 taaaattata tcaacaaaat cattttacta tttatgatga agataaagat ttttaccata
    27061 tttgcctaaa gcaatctgac tgcaaagcct tgcctagcta attcttcttt tacatcttta
    27121 ggggtatact tagaaaaatg aaaaatataa gcacccgcta aagcatcagc acctaaattt
    27181 aaagcctcaa ctccatcact tggattgcta agtcctccat tgataataag aggaatttta
    27241 agtttatttt gaaagatctt taaaagttct aaatcataac cctttgccct tccttcaaaa
    27301 tccacagaag ttaaaagaag ctctccagct cctttttttt catattctaa agcaagttct
    27361 aaaggacttt tttcaagtaa atttcccctg tcataaacac aaaattgccc tccttttctt
    27421 ttaacatcta tagaacaaac tatacattga gaaccaaaac gattagccgc tttacttata
    27481 aaatccatat cttctaaggc cttagaattg atagaaattt tatccgcacc taaatttaaa
    27541 atcttttgta tatcttcaag ggtttttatc ccgccaccta tagttaaagg cataaaacat
    27601 tctttagcaa gatcttctat actttcaaaa tctatttctc cactttttga agcatctata
    27661 tctaagataa taagctcatc aacattgcgt gcattataaa ttctcattgt tgaagttaaa
    27721 tgccctatag tgcgaaaatc tttaaattct atacttttaa caagttgtcc gttttttaac
    27781 aaaacacaag ggataattct agtttttaac atttaaagcc ttataaaatt ttctaaaagt
    27841 tttaagccta aattttgact tttttcgggg tgaaattgtg tagcaaaaat atgatctttt
    27901 tgtaaagatg caacaaattt atgtccgtat tgtgctttag cacttacaaa ctcatctttg
    27961 catttcacat aaaaagaatg cacaaaataa aaatcactct tattatctat gccttgatac
    28021 aaaggaactt gttttaaaat ttcaagctca ttccaaccca tatgtgggat ttttaaattt
    28081 aaatcctctt caaatttgac tacttcacct tctataaaac caagtccttc gcaaactcca
    28141 ccttcatagc ccctttctaa aaaaagctgc attcccaaac aaatgcctaa aataggtttt
    28201 ttttgtacta aaacttgctc ttttaaagct tctataaaac caaattcttt taaatttttc
    28261 atcgcttctt taaaagatcc cactccaggt aaaagcaatt tatctgcttt ttgcaaatct
    28321 tttggatttt tagctatgaa atttatagct cctatttttt caaaagcctt agcaacagag
    28381 tttaaatttc ccgccttgta atcaatgagc gctatcattt taaaacacac tcgtcttttc
    28441 ttaccaaaga accatcataa tctcttataa atttaccatt ttcatcacgt ttaaaaattt
    28501 ttttattggt aaaagaatct actatttttt gaaattcttc ctcgctaaaa ccactgaatt
    28561 caaggtattt tttaatagcc tttttagggg gcttgccatc gtatttttgt accaaacgca
    28621 ccccttcttc acggctgata taacctaaac gaatatccaa acaagcatta tccgttgctc
    28681 taccaaagcc gtatttgcag tattttaaat aatcatgcac atgattagaa taacaatcta
    28741 aattttcaaa attttcataa gtagtctcaa caggatgatc tagagttaaa aaaccatatt
    28801 ttttagaaat ttcaagaatt tttttataat cccatttaaa ataataccct aaaaatagcc
    28861 cagtaacccc tactctttga agttcttcat cacttggata agtatataaa aacaaatctt
    28921 tttcagtgat accatttacc ccaagcatat cagaagcacg atttcctaaa agcccgccaa
    28981 attcttcaag ccactctctg cctaaaatat ttttattttt actactcgca ggaccgccat
    29041 actctatctg cggactttct ccccagatga tcaaaggcac tccaaaattt accgctatgc
    29101 gtggaacaga agtaaaaatt cccaaatggt tttgccactc attatcccct gttcttataa
    29161 aagcttcacg ggcaagtttt tgataaactt ttggatcacg cttgatatgg atcaaatcca
    29221 cgccaagatg atttaaattg tctaaatttt tgcgccctat tttcgtaggt acgctaggct
    29281 caaaacacac acacaaagga ttaagtccaa gttcaagcat tttaaccact tgaaaagtag
    29341 aatcttttcc gccacttact ccgataacac aatcataaac aggatgtttt ttgtattttt
    29401 ttataagctc aaaaaattct ttttctcttt cttgccaatt aatattttga tttttagctt
    29461 cttgagaacg acaagcatca caaacacctt cttcatcaaa atgtaaatca ggcttagtat
    29521 ctggcatcac acatttttta caaaatttca taaatttcct ttaattagtc ttaaatatat
    29581 atcgttataa ttaaatttta ttttatgatt ttatatattt atattatata aaaattaaaa
    29641 aatgaatgaa ttctataatt taaatccata tggcattttt tgaatgaaac caagcaaaat
    29701 cataacaaag ttgtaatatt tatataatat aaatatataa attgaagaaa tatataatat
    29761 aattatatat cattttagtc aggaaattta ccaaagaaag aaaagtatgc aaataggaaa
    29821 ttttaacacc gataaaaagg tttttatcat agcagaactt agtgcaaatc acgcaggaag
    29881 tcttgaaatg gcacttaaaa gcataaaagc agccaaaaaa gcaggtgctg atgcgataaa
    29941 aatccaaact tacactccag atagcctcac actaaatagc gataaagaag attttatcat
    30001 caaaggagga ctttgggaca aaagaaaact ttatgagctt tatgaaagtg caaaaacccc
    30061 ttatgaatgg cattctcaaa tctttgaaac cgcacaaaat gaaggcatac tttgtttttc
    30121 aagtcccttt gctaaagaag atgtagaatt tcttaaacgc tttgatccta tagcctataa
    30181 aatcgcttct tttgaagcca atgatgaaaa tttcgtgcgt ttaatcgcca aagaaaaaaa
    30241 acctactatc gtttcaacgg gcattgctac agaagaagaa ctttttaaaa tctgtgaaat
    30301 ttttaaagaa gaaaaaaatc ctgatttaat ctttttaaaa tgcacttcgg cttatcctac
    30361 tgccatagaa gatatgaatt taaaaggcat agtaagttta aaagaaaaat ttaatgttga
    30421 agtgggacta agtgatcata gctttggttt tttagcccct gttatggcag tagcacttgg
    30481 agctagagtg atagaaaagc attttatgtt agacaaaaac atagaaagcg aagacagtaa
    30541 atttagtctt gattttgatg aatttaaagc tatggtagat gcagtaagac aggctgaaag
    30601 tgctttaggt gatggtaagt tagacttaga tgaaaaagct cttaaaaacc gtgtttttgc
    30661 aagaagctta tatgcaagca aggatatcaa aaaaggtgaa atgttcagtg aagaaaatgt
    30721 aaaatcagta cgtccttctt ttggactaca tcctaaattt tatcaagaac ttttgggaaa
    30781 aaaagccact aaagatatag aatttggcga tgctttaaaa caaggagatt ttacatgaaa
    30841 aatattttag ttacaggtgc tgatggtttt ataggctctc atctttgtga aagtttgatc
    30901 aaaaaaggtt ttaaagtcag agctttaagc cagtataatt cttttaattt ttggggacat
    30961 ttagaaaaaa gtcctttttt aaaagacatg gaagttgtaa gtggggattt aagagatagt
    31021 tttttttgcg aaaaaatcac caaaaatata gatgcgatct ttcatcttgg cgccttaatc
    31081 gccatcccct actcctacac agccccacaa agctatgtgg ataccaatgt caatggcact
    31141 ttaaatatgc tcgaagcagc taaaaaaaac gaaatttcgc attttatcca cacctcaaca
    31201 agcgaagttt atggcacggc cttttatgtg cccatcgatg aaaaacaccc tttacaacct
    31261 caaagccctt attctgcaag caaaatcgct gcagatatga tagcgctgag ttattataat
    31321 tcttttaatt taaatgtcaa tattgcacgc ccttttaaca cctatggacc aagacaaagc
    31381 gcaagggcta tcatacctac catcatcaca caaattttaa gcggagcaaa ggaaatcaaa
    31441 ctaggagatt taagccctaa aagggattta aattttgtgc tagatacttg cgagggtttt
    31501 atctctcttt taaatttaaa acattttgga gaagtttata atataggctc aggagtggaa
    31561 tactccatgc aagaagtact taatctcata caaaaaattt tagattctaa ggtaaaaatc
    31621 atccaagatg agcaaagatt gcgtcctaaa aatagcgaag tttttagact ttgttgcgat
    31681 gcaaacaagc ttaaaaaagc tacaaattgg caaagcaaaa taagtctaga agaaggttta
    31741 agacaaagca tagagtattt taaagaaaat ttagaaaatt ataaaagtga gctttataat
    31801 gtttgaaaaa gaaatttctt ttataaaaag tctttttaat aaagaaaata tcgccctaca
    31861 tgagccttgc tttataggca atgagaaaaa atatctctta gaatgtatcg atagcggttt
    31921 tgtttcaagc gtaggagaat ttgtaacgcg ttttgaagaa gctttaaaag aaaaaaccaa
    31981 agcacgcttt gtcatcgcta caaatacagg tacagcagcc cttcatatcg ctttattagc
    32041 taatggtatc gatgaaaact gcgaagtcat cactcaaagc ataagctttg tcgctacggc
    32101 caatgctatc gcttatacag gtgcaaaacc cgttttttta gatatagatg aaaacactct
    32161 aagtttaagt cctaaggctt tagagcattt tttagaaaat caaacttatc aaaaagataa
    32221 tcttagctat aacaaaacca cacacaaacc catcaaagct tgtgttatta tgcacacctt
    32281 tggtttaagc gctcatataa aagccatcaa agagctttgt gaaaaatacc acatcctttt
    32341 aattgaagat gctgcagaag ccttaggaag cacctatgaa aacaaggcct taggcacttt
    32401 tggaaagtgt ggaattttaa gctttaatgg taataaaatc atcacaggtg gatgcggtgg
    32461 ggcgatatta agcgatgatg aaaatttagc caaacttgca agacacctta gcaccacagc
    32521 taaaatcccc catccttacg aatacgatca tgataggata gcttataatt accgtctttg
    32581 caatataaac gcagcaatct tgcttgcagg acttgaaaat ttagaacttt ttttagaaaa
    32641 caaaagagaa cttgctaaaa tttacaagga tttttttaaa aatcacgata aatgtaaatt
    32701 tatcgatgaa aaaagcaatg aaaaaagcaa tttttggctc aataccttgc tttttaaaga
    32761 tgaaaattta agaaatatct ttttagaaga atgcttgaaa aataatattt tcgtccgtcc
    32821 tgtatggaaa agcttaccga gtttaaaagc ttttcaaaac tgtcaaagca atgagcttat
    32881 aaacactaaa aaattagaaa aacgcttgat taatttacct agtagcgtta gaatagcaaa
    32941 taaaaaggaa tgatgcgttg caaaatttaa ttcaaagcat taaaaaaatt taataagaaa
    33001 aaata
//
LOCUS       DARBBO010000006        31632 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.006, whole genome shotgun sequence.
ACCESSION   DARBBO010000006 DARBBO010000000
VERSION     DARBBO010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 31632)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31632)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31632
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.006"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..612)
                     /locus_tag="SB854_000191"
     CDS             complement(<1..612)
                     /locus_tag="SB854_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEG0956240.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANS
                     HISGRSLDSPLTAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSDYQLSITQKEEIAEKLYEKGIFNIKGAVPIVAKFLKI"
     gene            780..1142
                     /locus_tag="SB854_000192"
     CDS             780..1142
                     /locus_tag="SB854_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG0956241.1"
                     /translation="MSNYPKAIGPYSAYREANGLLFISGQLPINPASGEIESSDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFIAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            1146..2585
                     /gene="dcuC"
                     /locus_tag="SB854_000193"
     CDS             1146..2585
                     /gene="dcuC"
                     /locus_tag="SB854_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
                     /protein_id="HEG0956242.1"
                     /translation="MLGIVFSLSSVFLLVFMLYKKINAHMALLLSGLLLLSLAAIFGL
                     SPHIVAKGSLNLGFFDIFQVFNQTMSSTLAGLGLTLMTIAGFSAYMDHVGASYALFKV
                     FEKPLKAVKSPYVLLIVAYFIVQFLVLFIPSHAGLALLLMVTMYPILVRSGVSKLSAL
                     SVIAICQYIDHGPGSGNVIMASKVAEVDPAIYFVHYQLPTTLPIIIAVGIAIYLCNKF
                     FDKKDNFVFNAQEIEKELNENEGKEKELKKPPRIYAILPIIPLVLILGFSSVLDSILV
                     LMGISSAQEVKAAASTAIKMNVPVAMVISTFVAIIFEMIRYKSIVETLNSIMIFFKGM
                     GHLFVITVSLIVCGQVFASGLLSVGFVDTLIEFCKNAGFGVLAIIIAVSILLAVCAFL
                     MGSGNAAFFSFAPLIPNIAKHFGVETITIIAPIQIMTGFGRCVSPIAPAILAISAITK
                     VSPFAVVKRTAIPMLVAAIVNVIMTYIYL"
     gene            2598..3761
                     /locus_tag="SB854_000194"
     CDS             2598..3761
                     /locus_tag="SB854_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEG0956243.1"
                     /translation="MNSKTKLIHCGRGDQGAEVRSVNPTLMRASTILFKDHATWQKYR
                     ELRKTDRVLSYGARGTTTNFELEKLICTLEGGYRAQLFPTGLAALAMVLLNYASKDAH
                     FLITDAIYGPVRTICELFLDKMGVEIDFLKADASDVEEKIKPNTKLILCESPGSILYE
                     IIDLPKLCKIAHAHNIPVAIDNTYSSGYFLNPLELGVDISVIAATKYLSGHSDVTMGI
                     VVINEKEWKNFDKLPEALGFTTSPDDAYLVLRGMRTLDVRMKAHEKSADEIVEFLQSK
                     KEIKTIFYPKLKSHPNHEIFMRDHKGANGMITIEFAEGYSKDDAIKFVDKLEYFSIGA
                     SWGGYESLATVTTPPRTATDLSARGPFVRFHIGLEDTKDLIADLTQAFDSIKK"
     gene            3771..5138
                     /locus_tag="SB854_000195"
     CDS             3771..5138
                     /locus_tag="SB854_000195"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG0956244.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQPARDRFIELGFVLGNINATFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATTYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            5147..6487
                     /locus_tag="SB854_000196"
     CDS             5147..6487
                     /locus_tag="SB854_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HEG0956245.1"
                     /translation="MFYSEILADFIFNLKYENIPNTVVQRAKELMLDSLGTAIAASKE
                     ECVLNAFKAFENLSTEKNTPIWVNDQKLDPIYAAMLDGIASHALDFDDTHTEAILHAS
                     AILTPLCLSYGFHVNKDAKKIIKAFIVGWEIAARVGIASKGTFHKRGFHTTAIAGIFG
                     SVSASAILLDLNKEQIINALGLAGSFASGVNEFLSNGSNSKVLHIANAIKNGIMVAHF
                     AKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELSKALGKIWQTMQVSIKPYPSCHFAH
                     GLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLM
                     ALGFFDGKITLESYENLKRKEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGRIIQ
                     KDVFINKGNFDNPLSFEELKAKFLANAQIYLDNAKANKILDQIINLENLNHFSF"
     gene            6569..6793
                     /locus_tag="SB854_000197"
     CDS             6569..6793
                     /locus_tag="SB854_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEG0956246.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            6790..8631
                     /gene="feoB"
                     /locus_tag="SB854_000198"
     CDS             6790..8631
                     /gene="feoB"
                     /locus_tag="SB854_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEG0956247.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDSTNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNALGEFVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGI
                     YILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWYLVWFMVYNKAKMYLKKAG
                     TFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKSIEPIFKPLELDWKL
                     SVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIY
                     NPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN"
     gene            complement(8628..10121)
                     /locus_tag="SB854_000199"
     CDS             complement(8628..10121)
                     /locus_tag="SB854_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG0956248.1"
                     /translation="MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEYVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFIEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYTFIEQ
                     NFDENSMPSKDFWKYLEISFILVKGEFLKDKNDFLIAAKNYAFKHVSPYDFKLNMNVE
                     KPKLDVNKSFRMTLIYLCGGLDFEGIAYSILKAFEDNIAKISSLKAS"
     gene            complement(10125..10949)
                     /gene="fabI"
                     /locus_tag="SB854_000200"
     CDS             complement(10125..10949)
                     /gene="fabI"
                     /locus_tag="SB854_000200"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEG0956249.1"
                     /translation="MIIKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            complement(10953..11624)
                     /locus_tag="SB854_000201"
     CDS             complement(10953..11624)
                     /locus_tag="SB854_000201"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEG0956250.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTIGVKCDDIIVFPPSVAFL
                     EKENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            complement(11621..12823)
                     /locus_tag="SB854_000202"
     CDS             complement(11621..12823)
                     /locus_tag="SB854_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEG0956251.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKT
                     KAMNLKVGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            complement(12826..13824)
                     /gene="gap"
                     /locus_tag="SB854_000203"
     CDS             complement(12826..13824)
                     /gene="gap"
                     /locus_tag="SB854_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEG0956252.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            13884..14429
                     /gene="nadD"
                     /locus_tag="SB854_000204"
     CDS             13884..14429
                     /gene="nadD"
                     /locus_tag="SB854_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HEG0956253.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFK
                     QSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLIEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            14457..14783
                     /gene="rsfS"
                     /locus_tag="SB854_000205"
     CDS             14457..14783
                     /gene="rsfS"
                     /locus_tag="SB854_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEG0956254.1"
                     /translation="MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(14816..15193)
                     /locus_tag="SB854_000206"
     CDS             complement(14816..15193)
                     /locus_tag="SB854_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 domain-containing protein"
                     /protein_id="HEG0956255.1"
                     /translation="MKKILILLTLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCTKDPMFYDKKLEAKKLKEQEVEKIEKELDALHDQKDYMSKVEYKA
                     KKKALKEQKEKIKKEIEEYIDNL"
     gene            complement(15240..16610)
                     /gene="pgmL"
                     /locus_tag="SB854_000207"
     CDS             complement(15240..16610)
                     /gene="pgmL"
                     /locus_tag="SB854_000207"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HEG0956256.1"
                     /translation="MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVS
                     VGYDARYSANELFNYLVSGLNKAGIKICDIGLAPTPLGYFSLYEGLKFDANVMITGSH
                     NPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILNLYVKFMCE
                     QFSFLKDFNYKFGVDCTNGAAGVVIEPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGAL
                     KGVKSLYEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDI
                     KARFKN"
     gene            16732..17268
                     /gene="fliL"
                     /locus_tag="SB854_000208"
     CDS             16732..17268
                     /gene="fliL"
                     /locus_tag="SB854_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HEG0956257.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKTDKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            17268..17615
                     /locus_tag="SB854_000209"
     CDS             17268..17615
                     /locus_tag="SB854_000209"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEG0956258.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAIV"
     gene            complement(17616..18035)
                     /locus_tag="SB854_000210"
     CDS             complement(17616..18035)
                     /locus_tag="SB854_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956259.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGIFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(18032..19393)
                     /locus_tag="SB854_000211"
     CDS             complement(18032..19393)
                     /locus_tag="SB854_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HEG0956260.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLDEEKGKKILNAFVTFQEQSVHTAMRRMFCFPKWLSYVLGDRKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     RKL"
     gene            complement(19390..20511)
                     /locus_tag="SB854_000212"
     CDS             complement(19390..20511)
                     /locus_tag="SB854_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HEG0956261.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKADLSKIE
                     KNEQFPFFQISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFESFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            complement(20583..21767)
                     /gene="kpsS"
                     /locus_tag="SB854_000213"
     CDS             complement(20583..21767)
                     /gene="kpsS"
                     /locus_tag="SB854_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HEG0956262.1"
                     /translation="MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAVKMRKNQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQNKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLLRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            complement(21764..23833)
                     /locus_tag="SB854_000214"
     CDS             complement(21764..23833)
                     /locus_tag="SB854_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HEG0956263.1"
                     /translation="MKHYSISKKLIANVRNFYTISLYKKKSKINKDDLFLGWGRKKSG
                     LKAINLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATAPSKLENLL
                     NTYEFKDEEIKQAKKVIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASL
                     EFGLAKDFKTVDMIKDAIKENPDSKIYIKIHPDVLSGKKQSDLDINSLPKECILITEN
                     FNPIALLEFFDKVYTKTSGMGFEALMQGCECVCYGMPFYAGWGLTKDKLECKRRMQKR
                     SLEEVFYAAYILYSEYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFMLGFTLWKR
                     YFIRPFFKAKDNKIIFLNSLKSLARYKLKENDKFFIWGKRIDYNALKTTLIKKAQDEN
                     LLHFIPKISLVEDGFIRSISLGSDLTRPFSLNVDDKGLYIDPNKASKLEELLQNEIFD
                     ENMLNRAKNIIKILLENRFSKYNGLKHENLKINAKIGQKIILIPAQVEDDVSMILGGF
                     GLSTLDLLKEVRAKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSA
                     IKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELV
                     VGALIIYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRF
                     YEFLAKK"
     gene            complement(23830..24342)
                     /locus_tag="SB854_000215"
     CDS             complement(23830..24342)
                     /locus_tag="SB854_000215"
                     /EC_number="2.7.1.224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine diphosphoramidate kinase"
                     /protein_id="HEG0956264.1"
                     /translation="MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDEL
                     REILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYY
                     EIYIECDMHELIQRDQKGLYTKALNKEINNVVGVDIEFDKPEADLVINNSCRNNLEEK
                     VELIIKKLAL"
     gene            complement(24332..25093)
                     /locus_tag="SB854_000216"
     CDS             complement(24332..25093)
                     /locus_tag="SB854_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HEG0956265.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNEVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFILKCIEEKQ
                     DLIISYADIVYSQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMTNGY
                     IIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK"
     gene            complement(25095..25697)
                     /locus_tag="SB854_000217"
     CDS             complement(25095..25697)
                     /locus_tag="SB854_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEG0956266.1"
                     /translation="MFIGITQRLICNESYHEERECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSYYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLEEKIPLLGICR
                     GAQMIAHYFNSHISPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCLAEDN
                     TIEAFKHKYENIFGIMWHIERENGLNNIQILREWFSLIKE"
     gene            complement(25688..28027)
                     /locus_tag="SB854_000218"
     CDS             complement(25688..28027)
                     /locus_tag="SB854_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956267.1"
                     /translation="MAELNFKTKAQNLKNLQTKLKKAKVLPLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIKADSKDELLKALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSKSAKTYYH
                     YRNYLEFKDIRLQKIIELIKELEVLYDCHFLDVEFAFAIQDDKEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPRRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVNFYLDKLNKNHELHDKIEFNIVYSCYDFNSSKKLEELLNHGFNENEIKRLEFSL
                     LELTNKIINPRSGFYLKDIQKAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPF
                     AGVARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFL
                     KDFGHLRAGTYNILSPRYDEDFELYFDVDQKDSKVYLQDKAFVFSKEKTKALNVLLRE
                     HGLEINACEFFDFLKQAIEGRELVKFKFTRLLSKAIVYIEELGKYYGIEKEDLAHLDI
                     KSILNLYSSLYSINPKEQFVEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIP
                     NFITQKSITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAI
                     RASELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
     gene            complement(28042..28803)
                     /locus_tag="SB854_000219"
     CDS             complement(28042..28803)
                     /locus_tag="SB854_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG0956268.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCRVVSVEPNDAMREIGIERTKDQKIDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAHRLLKSEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKDLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLETD
                     EGSELFNKISDKISQRLPKEFSIKYTTRCWSAKKI"
     gene            complement(28856..29629)
                     /locus_tag="SB854_000220"
     CDS             complement(28856..29629)
                     /locus_tag="SB854_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG0956269.1"
                     /translation="MKQGDFTEVAKHYHNRPAYSPFLLEKLVACINDKNKNFKDLNIV
                     EVGAGTGKLTKMLGEMFGCQISAVEPNDNMREEGQKFTQNLSNISWHKGSGEETCMSN
                     NQADWVIMASSFHWTDPKKSLPEFNRILTGGGYFTAIWNPRHIVEGSVFDEIEKEIKH
                     IVPDLARVSSGTQNVKKWEEILVSTGDFTDCFFMECDYKEFWDKERYLGAWHSVNDIQ
                     AQAGEKRWKEILEMIEAKISHMQSIEIPYKIRAWTARKA"
     gene            complement(29704..31545)
                     /locus_tag="SB854_000221"
     CDS             complement(29704..31545)
                     /locus_tag="SB854_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG0956270.1"
                     /translation="MHNPNSAIERVKNHLAYKLGQAMIDFTNSSSGGGYIALFKKLYK
                     IKKQHKKEQKIYQQTIQVFPQLKYPSLEACSDYEQALRYKFHLSYMLGEVLIKAYQTW
                     YTGGGFKLKNNIKKANKEFQIFREIFKEFDQINSSILEGLIDNKQLFLKEFSRIKNIL
                     KIHQDYKAILDNIFHNFNYFIQNFDLIEEWLLSDDFKERYKKENHPYPSLLDPKKLND
                     KNEKINYHNIPAELAWEMNLPLPDNYEFVWLSSALSGNAAMTMYLELCEVNICKYIHH
                     NPFIIYSNIFMQLLNNPLKYNVIAYTDYTHVYVSRGDLKRFLNLLNKNKPVVYLVRDP
                     ISRLKTGLNHINLKSNRLDRFDLDTPIERVLDRETYYFESPLPTCDHIKTYWIYAESF
                     FRLNFLTQFFKIEKITYLDMASIKPEYAYHTFSQLNALYHFRQISKNLFYDTVVYDML
                     GAFLSIPLILCVDLENFGVNYADGKIIEILITTRQFFKLHKINNYKKINPVLFKDNLP
                     FENLIFCIPKEQFVYLENNLTLIKCIQSYLEEFISKMKVKFDLKAKCLICENQILAYL
                     KNNQTLMRQWKKIFDQELICIKQHHPNIVASWKYYQEFEKMCKELDG"
BASE COUNT        10810 a         5409 c         4229 g        11184 t
ORIGIN      
        1 aatttttaaa aattttgcta cgataggaac cgcccctttt atattaaaaa tacctttttc
       61 atatagcttt tcagcaattt cttctttttg agtaatgctt aattgataat cagaatttaa
      121 ataactagaa tctacgcttt gaactaaaat atcctctatc gagtgactta atgtttctat
      181 acttgaatca ttttgagaaa aactaatatt tcctaaaata tcacccatat ctccaatttt
      241 ttctaaatca atcatcttgc atattaaatc tctcataatg ctagtatcat gattgataca
      301 caaaatacct actaatttgt catgattttt aataaaaaaa gtagatcctc taattaattt
      361 tgattttcca acaagagcct tataatcaca taaaaaatct ttttctaaat attttttatt
      421 ttgcataagc tcacttgcaa aagcagtcaa gggagaatct aaacttcttc cactaatgtg
      481 actgttagca attgctgcaa tataggcccc atcttcagta attacatgaa aaactatctc
      541 atattgctca cctaaaactt ctcctaaaaa atatgtcaac tttataaatt gttgtttttg
      601 tccctcatcc ataaaactac cttcaataaa aaattaatat aatattaaat tctactcttt
      661 atactttaaa acatttctta aaaataaaat tttattatta tgataataaa ctattgacaa
      721 attattattg tagtgataaa atgcattctg tttaatctat atttaacaaa ggagaattca
      781 tgtcaaacta tccaaaggcc attggtccat actcagctta tagggaagca aatggacttt
      841 tatttatatc aggacaactt cctatcaacc ctgcttcagg agaaatagaa agctctgata
      901 tcaaagaaca aaccaaacaa tctttaaaaa atatcggtgc tatcttagaa gaaaatggta
      961 tcagttatga taaagtgatt aaaaccactt gctttttagc tgatattaat gattttatag
     1021 catttaatga aatttatgct gaatttttta aagctcctta tccagcaaga agtgcttttg
     1081 cagtaaaaga tctgccaaaa aaagctaaag tagagataga gatcatcgct caaaaaggat
     1141 aaaacatgct aggtattgtt ttttctttat ctagtgtttt tttacttgtt tttatgcttt
     1201 ataaaaaaat caatgctcac atggcattac ttttaagtgg tttactttta ctttccttag
     1261 ctgctatttt tggactttct ccacacattg tcgctaaagg ttctttaaat ttaggttttt
     1321 ttgatatttt tcaagttttc aatcaaacca tgtcaagtac attagcaggg cttggactta
     1381 cacttatgac tatagcaggt ttttctgctt atatggatca tgtaggggct tcttatgcac
     1441 tttttaaagt ttttgaaaaa cctttaaaag ccgtaaaatc tccttatgtt ttactcatag
     1501 ttgcttattt tatcgtgcaa tttttagttc ttttcatccc ttctcacgca ggcttggcac
     1561 ttttacttat ggttactatg tatcctatac ttgtacgttc tggtgtttca aaactttctg
     1621 ccttaagtgt gattgcgatt tgtcaatata tcgatcatgg acctggaagt ggaaatgtga
     1681 ttatggcatc aaaagtagct gaagttgatc ctgcaattta ttttgttcat tatcaactcc
     1741 ctacaacctt gcctatcatt atagctgtag gtattgccat atatctttgc aataaatttt
     1801 ttgacaaaaa agataatttt gtcttcaatg cacaagaaat tgaaaaagaa ctaaatgaaa
     1861 atgaaggtaa agaaaaagaa cttaaaaagc ctcctagaat ttatgcgatt ttacctataa
     1921 ttcctttggt tttaatccta ggatttagtt ccgtgcttga tagcatcttg gttttaatgg
     1981 gaataagtag tgcccaagaa gttaaagcag ctgctagcac tgcaattaaa atgaatgttc
     2041 cagtagcaat ggtgatttca acttttgtgg ctattatttt tgaaatgata cgctataaaa
     2101 gtatagtaga aactcttaat tctattatga ttttctttaa aggaatggga catttatttg
     2161 ttatcacagt ttcactcatc gtttgtggtc aagtatttgc aagtggtctt ttatctgtag
     2221 gttttgtaga tactttaata gaattttgca aaaatgcagg atttggagtt ttggctatta
     2281 ttatcgccgt ttcaatcttg cttgcggttt gtgctttctt aatgggttca ggaaatgcgg
     2341 cattttttag ctttgctcca cttatcccaa atatagcaaa acactttgga gttgaaacta
     2401 tcaccataat agcaccaatt caaattatga caggctttgg aagatgtgtt agtcctattg
     2461 caccagcgat tttagctatc tcagctatta caaaagtaag tccttttgcc gtggttaaaa
     2521 gaacagctat tcctatgctt gtagcggcta ttgtaaatgt tattatgact tatatctatc
     2581 tttaaaaagg agaaaaaatg aactcaaaaa ctaaacttat tcattgtggc agaggcgatc
     2641 aaggtgctga agtaagatca gttaatccta cacttatgcg tgcatcaacc atacttttta
     2701 aagatcacgc aacttggcaa aaatacagag aattaagaaa aacagatcgt gttttaagtt
     2761 atggagctag aggaacaaca accaattttg aacttgaaaa acttatttgc actctagagg
     2821 gtggttatag agcacaactt ttcccaacag gacttgcagc attagctatg gtgcttttaa
     2881 actatgcaag caaagatgca cattttttaa tcaccgatgc aatttatggg cctgtaagaa
     2941 cgatttgcga attattttta gacaaaatgg gagttgaaat tgatttttta aaagctgatg
     3001 caagtgatgt agaagaaaaa atcaaaccta ataccaagct tatcttatgt gaaagtccag
     3061 gttctatact ttatgaaatc atagatttac caaaactttg caaaattgcc catgcgcata
     3121 atatccctgt agctattgac aatacttatt ctagtggata ttttctaaat cctttagaac
     3181 ttggagtgga tatttcagtt atcgccgcta caaaatatct tagcggacac tctgatgtaa
     3241 ccatgggtat agtagtaatc aacgaaaaag aatggaaaaa ttttgacaaa cttccagaag
     3301 ctttaggctt tacaacaagt cctgatgatg cttacttagt acttcgtggt atgagaacac
     3361 tagatgtaag aatgaaagcc catgaaaaaa gtgctgatga aattgtagag tttttacaaa
     3421 gtaaaaaaga aattaaaaca attttctatc caaaactcaa atcccaccca aatcatgaaa
     3481 ttttcatgcg tgatcataaa ggtgcaaatg gtatgattac catagaattt gcagaaggtt
     3541 atagcaaaga tgatgctatt aaatttgtag ataaactaga atacttttca attggtgcta
     3601 gctggggtgg atatgaaagc ttagccaccg taactactcc acctagaact gcaacagacc
     3661 taagtgcaag aggaccattt gtaagatttc atataggtct tgaagatact aaagatttaa
     3721 ttgctgattt aacacaagct tttgatagta ttaaaaaata aggagataag atgacaggaa
     3781 ttagcgtatt tgatcataga ttactagcag actcatggag cacacaggaa atgcgtgcta
     3841 ttttttgcga acaaaaccgc atacaaaaat ggctcgatgt tgaagcagct ttagcaaaag
     3901 cacaagcaaa acttaaaatt atccctaaaa aagcagctga tgagatcgca aaaaaagctc
     3961 attataaatt tatggatatg gactttatct ttgctgaatt taaaaagact aaacaccctt
     4021 tagttcctac tgtaagagga ttagaaaaag cttgcgataa taatttaggc gaatatgtac
     4081 attttggagt aaccactcaa gatatcatcg atacaggact ggttttacaa tttaaagaag
     4141 caatgactct tgtaaaaagc gaattaaaag ctatcgcaaa agccttagcg aaactagcta
     4201 aaacccataa aaacactgct atgatgggaa gaactttagc acttcaggct ttgcctatta
     4261 cttttggaca taaagtggct atttggttaa gcgaacttga gcgtcatttt gaaagaatac
     4321 ttgagcttga aaaaagactt tatgtaggta gtatagtagg tgctgtagga actaaagcaa
     4381 gtttaagtga tgagtgcaat gaagtagaaa aactcacttt agaaaattta ggacttgatg
     4441 tgcctaatat ttcttggcaa cccgcacgtg atcgctttat agagcttggt tttgtactag
     4501 gtaatatcaa cgcaaccttt aacaaaatcg ctcatgaaat tttaatcctt tcgcataatg
     4561 aaattgatga agttgctgaa ccttttggaa aaggacaagt aggatcaagc actatgccac
     4621 acaaaagaaa tcctgcagta agcgaaaatg cggttacagt aagcaatgcc tttaaagcaa
     4681 atttagccat tttaagcgat attgaaagac atgaacatga aagagatggt caagtttgga
     4741 aaatggaatg gaagctttta cctgaaatgt ttttaatgct ttctgtggtt ttagcaaata
     4801 tgaaattcgc tcttagtgat ttagaagtaa aaaaagataa aatgcttaaa aatttaaata
     4861 ctcttaatgg ttttgtttta gccgagcgtg ttatgtttgc attaagcgat cattatggaa
     4921 aacaacatgc ccatgaaatt gtttatgaaa atgctatgct aggtatagaa aaacaaaaaa
     4981 cttttaaaga agttttactt gcagataaaa gagtatctaa ggtattgaaa gaaaaagaaa
     5041 ttgatgcttt acttgatgca acaacctatg taggatatgc accaaaactt gtagatgaat
     5101 ttttagcaaa aatcaaaaat agcgctatct taaaatagga aaaatcatgt tctatagtga
     5161 aattttagcg gattttattt tcaatcttaa atatgaaaat atccctaata cagttgttca
     5221 aagggctaaa gagcttatgc ttgatagcct tggaacagct atagcagcaa gcaaagaaga
     5281 atgtgtttta aatgctttta aagcttttga aaatttaagc acagaaaaaa atactcctat
     5341 ttgggtaaat gatcaaaaat tagatcctat atatgcagct atgctagatg gcattgcttc
     5401 tcatgcgtta gattttgatg atacgcatac agaagcgatt ttgcatgcaa gtgcgatttt
     5461 aactccactt tgtttaagtt atggttttca tgttaacaaa gatgcaaaaa aaatcatcaa
     5521 agcttttata gtaggctggg aaattgcagc tagagtaggc attgcaagca aaggcacttt
     5581 tcataagcgt ggttttcata ctactgctat tgcaggaatt tttggaagcg taagtgcaag
     5641 tgcaatcttg ctagatctta acaaagaaca aatcatcaat gccttaggac ttgcaggaag
     5701 ttttgcaagt ggggttaatg agtttttatc caatggatct aattcaaaag ttttacatat
     5761 tgctaatgct attaaaaacg gcattatggt ggctcatttt gctaaaaaca atatgagtgg
     5821 gcctttgagt atttttgaag gtagagacaa tatctttaaa tgttttggca tagaagaaga
     5881 atgcgataaa acagaactta gcaaagcctt aggtaaaatt tggcaaacca tgcaagtttc
     5941 aatcaagcct tatccaagtt gtcattttgc tcatgggctt attgattgtg ctattgcttt
     6001 aaaaaatgat ggtttaaaag ctgatgaaat taaaagtatt cattgctttg tagatgaagt
     6061 tcctatttct tttatctgcg atcctttgga agcaaaatac actccaaata gtgcttatga
     6121 agctaaattt tccatgcctt ttttaatggc tctaggattc tttgatggta aaatcactct
     6181 tgaatcttat gaaaatttaa agcgtaaaga agtactagaa tttgctaaaa aaatcagtta
     6241 cgaaaaaagg aaatctcaag gctttccaaa atattttcca gggcatttag aagccagttt
     6301 gcaagatgga cgcataatcc aaaaagatgt ttttatcaat aaaggtaatt ttgataatcc
     6361 actaagtttt gaagaattaa aagctaaatt tttagccaat gcacaaattt accttgataa
     6421 tgctaaagct aacaaaattc tagatcaaat catcaatcta gaaaatttaa accacttttc
     6481 tttttaaata tttatccttc tttttacaag aaggataatt tcattacact tttttattat
     6541 aatatttatt attaatttag gaattacaat gactttaaac gagttaaaag atggacaaaa
     6601 ggctattatt gtcaatttaa acgctcacaa agaactcaaa aatagacttt taagctttgg
     6661 atttattaaa aataaaaact tgaaaaaaat tcactcctct ttaaaaaatg ccaccataat
     6721 ggtagaactt gatacaagtt gtgttatcct aagatctgat gaagctaaaa ccatagaagt
     6781 gaatcttata tgaaaaaaat caaaatagcc cttgtaggtc agcctaatgt aggcaaaagt
     6841 cttcttatta atgcgctttg caaagctaat atgaaagtag gaaattttag cggagttact
     6901 atagaaaaag caagtgcaaa aactttttac aaaaactatg aatttgaagt cattgattta
     6961 ccaggaactt attctttaga tggatatagc gaagaagaaa aaatcacacg tcatttttta
     7021 aatcaaaatg actatgatgt tattgttaat gttttagatt ctaccaattt agaacgcaat
     7081 cttatcctta gtgcagaact tttaagcctt aataaaaaaa tgcttttagc tttaaatatg
     7141 tgcgatgaag ccaaaaaaga aggcatagag cttgacactt ctattttaag ccaagaattt
     7201 caaagtcaag ttgttgaaat ttcagcaaaa acaaaagaaa atttagaact tttgctgcaa
     7261 aaaattatta ttttatttga aagtaaattt attccaagat cccaatttta cactccgctt
     7321 tgcgaaaaaa gtccagaaaa agaagattta ttatatttta ttaatgaact ttcaaaaaaa
     7381 attatcacgc acaaaaaaga agaaagaaat ttaaccaaaa aaatcgatgc cttacttatc
     7441 cataaattct ttggcttacc tatattttta tttttaatgt ggcttttatt tcaactcacc
     7501 tttagcttag gacaaattcc tatggattat atagaatcgg gctttaatgc cttaggtgaa
     7561 tttgttaaaa acaatatttc taataccttt atcgcttcag ctttggctga tgggattatc
     7621 gcaggtgttg gtgctgtgat actttttttg cctaatataa tgattttatt tttaggcata
     7681 gctcttttag aaaccacagg ctatatgtca agagtagctt ttttacttga tgggatttta
     7741 cataaatttg gtttgcatgg taaaagtttt attccactaa tcactggttt tggttgttca
     7801 gtacctgctt ttatggctac acgcactctt aagaacaaaa gagatagact tttaactctt
     7861 tttgtgatca attttatgag ttgtggggca agacttcctg tatatgtgct ttttatcggt
     7921 gctttttttc caagtgaaaa agcaggaaat tatctttttg gaatttatat tttaggtgcg
     7981 attttaggac tttgtgctgc aaaattttta agaatgacag catttcgtgg acttgatgaa
     8041 ccttttgtta tggaaatgcc aaaatatcgt atgccaaatt ggtatttagt ttggtttatg
     8101 gtttataata aagccaaaat gtatcttaaa aaagcaggaa ctttcatact tttggcctct
     8161 ttgcttatat ggtttgctag taattttcca aaaagtgaag aaaatttaaa tgattttaat
     8221 gctcaagaaa gagctataga acaaagttat ttaggacaat ttggcaaaag catagaacct
     8281 atttttaaac cccttgagtt agattggaaa ttaagcgtat ctttaatcag tggtttggct
     8341 gctaaagaag tgatgatttc aactatggga gtgctttatt cactaggaaa agatgtagat
     8401 gaaacaaata atgatttaaa aggaattatc gctaaaaaca tacctatacc aagtgcagtg
     8461 gcttttattt tatttgtaat gatttataat ccctgctttg cagcaactat agttttttca
     8521 aaagaaagtg gaaagctaaa atacactctc tttctctttc tttttacctg cacaagtgct
     8581 tatatagtag cttttatagg gcttcatatt gctaaaattt tattaaatta acttgctttt
     8641 aatgatgaaa ttttagcaat attatcttca aaagctttta aaatactata agcaatacct
     8701 tcaaaatcaa gcccaccaca aagatagatt aaagtcatac gaaaagattt attcacatca
     8761 agctttggtt tttcaacgtt catatttaac ttaaaatcat aaggacttac atgtttaaaa
     8821 gcataatttt ttgccgcaat taaaaaatca ttcttatctt ttaaaaactc gcctttaact
     8881 aaaataaagc ttatctcaag atatttccaa aaatcttttg aaggcatgga attttcatca
     8941 aaattttgtt ctataaaagt atagtttttc tcaaaagatt ttttataatt ttctacaagt
     9001 aaagcaccta atttattttt agctatattt tgtaaaataa gttttatatt gctttcaaat
     9061 tcaaaatcta tttgttctaa aattttaatt tgctcttcta taaaaaattc ttgttttaac
     9121 tcttcattac aaagtttagc gtaagaaaaa atatttgcca taggcttttc ataattccca
     9181 aactcatccc aaaaattttt ctcactacag gctatacaac catgtcctgc agccactggc
     9241 caagaagttt tagcattgaa tttcacttta ggacagttgt tgtaagtata aggtccttta
     9301 caacctatct taaataaaca agccccattc tttgcagcct catcgtcaaa atgttcagca
     9361 aaaatcccac tttcaaattt cgcctttctt tcacacatat catgcaaaca tttaccataa
     9421 gcccacacag gacgattttg ctcatcaagt tcaggcaaaa ctccaaataa agcaaaaaaa
     9481 cttaaagtcg caatgatatt tatatcactt ggaggacaac ctggaatatt tactactttc
     9541 tgacttaaaa cttcgctaat accacaagtt ttactaggat ttggataagc agcctgaata
     9601 ccaccataac ttgaacaagt acccactgca aagatagcct tggctttagc ggctagtttt
     9661 tctaaaattt catagccact ctctccttgc gctcctatag taagaaaaaa ggtatcaatg
     9721 gctgcaacac caccttcaac cgctaaaata aaatcttctt ctaaaacata ctctaaaagc
     9781 tcttcagcct tagtgccatt tgccgccatt aaagtttcat gatattctaa agaaaaaaaa
     9841 tcaaaaataa gctcatcaaa acttggcaac tcagaacgca acaaactctc gctacaccct
     9901 gtacattcac aaagatgaag ccatactaac tttgttttag gtgcgatttg aaaaaatctt
     9961 tgagcaagag ctggaatttc attgcctaaa gataaatgcc tagcaagaat ttttacactt
    10021 tcttcattga taaccttatc ctcttttaaa gtagaattct caagtttttt aatgcgatct
    10081 tcaagtatat tttttaattc ttcattgcta agctttgcca ttttttatcc tttttgatta
    10141 tcccaacaaa gaacagtttg cccttcttca tttttttcaa catcgcccat acccatgatg
    10201 ttatatcctg catcaacata atgtatttca cctgtaacac catttgctaa atcgctaagt
    10261 aaatacatag ccgaattgcc tacatcttct atactaacat tgcgttttaa aggagaattg
    10321 atttcattgt attttaaaat cattctaaaa tcccctattc cacttgctgc caaagtttta
    10381 ataggacctg ctgaaatagc attaacacga attcctttta ctcctagatc tcttgctaaa
    10441 taacgcacag aactttcaag tgcggctttt gctacaccca taacattata atgaggtaca
    10501 tatttaaccc caccaagata acttaaagtc aaaatcgaac ccttatcttt taaaataggt
    10561 aaaaccgcac gtgttaaaga aagtaaagaa tacacagaag tttgcatagc tatatcaaaa
    10621 gcttcttttg aagtttctaa aaaagaattt tctaaagctt cttttggagc aaaagcaacc
    10681 gcatgtacta caaaatcaat ctcacctaaa tcttttttga ttttttcagc gatagaatct
    10741 aaatgctcgt tattatttac atcaagctca taaacaaaat tagaattaaa ctcttgtgct
    10801 ataggttcta cacgtttttt taaagcatca tttaaaaaag taaaagcaag ctcggctcct
    10861 tgatcaaaac atgcttttgc tatgccataa gcgatagatt tattatttgc aacccctaca
    10921 ataaggcctt ttttaccctt tataatcatc ttttatcctt tgattaattt tataaaattt
    10981 tctactttta aagctgcaga gcctatcaaa actccaccac aatgatttac acttaaaatt
    11041 tctttgatat tattttcatt cacacttcca ccataaagca aaggtgcctt ggttaaactc
    11101 gctaaaaatt caagcacttt agcgatatct gtactttgtg cactcactcc cgttcctata
    11161 gaataaatag gctcataagc gataatgagt ttttcataat ttaaatcaat aatttcaagt
    11221 tgttttttta aaaactctaa agtcttgcct gaattttttg tatctaaatt ttcacctata
    11281 caaaaaacaa ttttataacc atgctcttta gcaaaatcaa atttagcctt aataaattct
    11341 tcatctccta aagctcttct ttcagaatgc ccgattaaaa cgcatttgat cccaaattcg
    11401 tccaaatgtt cttttccaag ctcgcctgta aaagcaccat taacacaagg ataaaaattt
    11461 tgggctcctt gtatgaagtt attttctttt tctaaaaatg ctacactagg tgggaaaacg
    11521 ataatatcat cgcattttac ccctatagtt ttatttaaaa tttcagcata aattttaaaa
    11581 cttgctcttg tgtgattgca ttttaaattt gcagcaaaga tcattcattt tccttagatc
    11641 ttaaagcttt tacacctgga agttctttac cctctataag ttcaagagaa gcgccacctc
    11701 cagtagaaat aaaagtcatc tcatctgcat cacctgcgcg cgcaaccaca tcagctgtat
    11761 caccgcctcc aacaacagaa gttgcatgcc cttcactaat ataatgactc attttaatgc
    11821 taccttttga aaatttatca atttcaaaaa cccccatagg tccattccac caaatcgttt
    11881 gcgcatcaga aatcacctct ttaaaaagtc tcacacttgc aggtcctata tctaaaccca
    11941 tccaaccatt tggaatttct tgtgctggaa caaatttcat cggcacatct tgtgagcacg
    12001 caggagcggc tacaacgtct actggaagat aaattttcac tcctaaattt ttacctttag
    12061 taagaatttt attagcttct tctaaaagtt cttcttctaa aagtgaattt cctatatcat
    12121 aacctaaggc ttttaaaaaa gtaaatgcca tacctccgcc tatgattaat ttatctacct
    12181 ttggtaataa atttgtcaat gcttgaagtt ttccacttac ctttgaacct ccaacaacag
    12241 cgacaaaagg acgtgctgga tgtttgataa gattgcttgc aaaatcaatt tctttttgga
    12301 gtaaaaatcc tgcacctttg tgtttttcat caaaaaattt agtaatagcc tccacgctag
    12361 aatgtgctct atggcatact ccaaaagcat cattgatata aacttgaacc atagaagcaa
    12421 gttctttggc taaattttca tcatttttag tttcgccttt ttcaaaacgc aaattttcaa
    12481 gaagtaaaat ttcacccact tttaaattca tagctttggt ttttgcatct tcgccgataa
    12541 catcttttgc cataacaatt tctttatcta aaagtctagc aagacgctta gcaacaggtt
    12601 ctaaagaata cttggagcta atttcttttg gacgccctaa atgagaggct aaaatcacac
    12661 tacatccatt atccaaacaa tatcttatcg taggaatagc tgatcttatg cgtctatcat
    12721 cagtgatatt taaaaaatca tcttgaggaa cattaaaatc acatcttata aaaacttttt
    12781 tcttagctaa atcaatgtct tttatagaaa taatatcact catgattaag ccttatttgc
    12841 aatatatact gccatatcta ctagacgact tgaataaccc cattcattat cataccaagc
    12901 aatcaccttg ataaaatcat ccgcaatcac ttgagttaaa tcacttgcta caatagctcc
    12961 ataagaacaa gtgataaaat cgcttgaaac tctttcatca tcatccacca ttaaaatgcc
    13021 ttttaaattt gtagctgcag cttttctaaa agcttcattg atttcatctt tactgacttt
    13081 acggcttagc tgcgcagtta aatccacgct tgatacatca atcactggca cacgcatact
    13141 ttgtccgtga agcttgccat taagttcagg cataacaagt ttcatagctt ttgctgcgcc
    13201 tgtagaagtt ggaatgatat tttgcgctgc agcacgagaa cggcgtttat ctttggcctt
    13261 agcatcaata atactttgtc catttgtata agcatgtatt gttgtcataa gtcctttttc
    13321 tataccaaaa ttatcttgta aaacacgaca aacaggacct aaacaatttg ttgtacaact
    13381 tgcattagaa ataatgcttt cacccttgta aagttctgaa tttactccta aaacataagt
    13441 aggtgtatca tcttttgcag gagcactcat gatcactttt tgcactccca tatctataaa
    13501 ttcttgacat tttgccatag ttaaatgcgc tcctgtacac tctaaaacaa tttgtgcgcc
    13561 gtgttttgca aagtcaagat cttttacatt gcgactttta aatactttga tttttttacc
    13621 atttaccact aaatcatcgc cttcactatc aacactgcct ttaaattcac catgtactgt
    13681 atcgtattta aaaaggtatt ttgtaagttc aatatccgta gtatcattta tcgccacaag
    13741 ctcaatatca tttctttcta agatgattct tgcaacacat ctgcctatgc gtccaaaacc
    13801 atttatagca acttttacag ccatttaatt tccttttgca aaatataatg ttaatattct
    13861 acaaaaaaaa ggttaaaatt ttaatgaaga tagcactttt tggtggcagt tttgatccac
    13921 cacataatgg acacaatagc gttgttttag aggctttgga aaaattagat attgataaac
    13981 ttattattat gcctacttat atcaatcctt ttaaacaaag ttttagtgct gatgaaaagc
    14041 aaagattttt atgggttaaa aaactttggg gacatttacc aaaagttgaa atttgcgatt
    14101 ttgaaatcag gcaaaaacgc cctgttccta gcatagaaag tgttaagtat ctttataagc
    14161 tttataatcc tagtaaattt tatcttttaa ttggcgcaga tcatttagaa aaacttcatc
    14221 tttggcatga ttttgaaaaa ctcaattctt taatagaatt tgttattgcc aatcgcaatg
    14281 atataggaat tcctaagaat ttcaaagatt taaaaaccaa taaaaaaatc gcttcttctt
    14341 tcatacgcga cactttaaat acaaatgagg tttgtgaaga aattaaagat gaagtaaaaa
    14401 aatattatga aaaattacaa aaaaattgat acaatttcaa aaattaaagg acaataatgc
    14461 aagaaagaat agatttaatc gttaaaattt tagatgaaaa aaaagctgaa aatatcaaaa
    14521 ccattgacat gagcgagcaa gaatactttg taaaatatgt cattattgca gctactttag
    14581 gagaaagaca cgctctatcc ttgatcgatg agcttaaaac acaacttaaa gccaaaggtg
    14641 aggaattttt aaacatagat agtagcgaag aatggagcgt gattgatctt ggcgatattt
    14701 taatccatct tttaacacca gaacacagag gaatttataa tatagaagaa ttactagaaa
    14761 accttaaaaa aggcagggtt taaaaaggct aaaatttaat tagccttttt aatttttaga
    14821 gattatcgat atattcttca atctcttttt taattttctc tttttgctct tttaaagctt
    14881 ttttcttagc cttatactca accttgctca tatagtcttt ttgatcatgt aaagcatcga
    14941 gttctttttc gattttttcc acttcttgtt ctttaagttt tttagcttct agttttttat
    15001 cataaaacat aggatcttta gtacaatcat tttgcacttg ctttaaagca agttctaaac
    15061 ttaaagttct agctgtgtca ttatgtgctt tagaaaaact gatttcttta ttgatacgat
    15121 cgatttttct atcacattca cttgcaccaa aagcaaaagc acatagtgta agtagaataa
    15181 gtattttttt catttttaat tcctttttaa aataaattaa atcgcggaat attatctcat
    15241 caattcttaa atctagcttt tatatcatta aacaaagtaa ataccatact ttcaagctct
    15301 tttgctcttt ctaaagatgt tgcctcaaag cgtgtgataa gataagggct ggtattagat
    15361 gcacgaagta aagcccatcc atcgccaaaa tctatcctag ctccatcaat ttcataaaga
    15421 cttttaacac cttttaaagc tcctttttca atctcttttt gaaattcttc cacaagtttg
    15481 aatttttctt cttcatttac aggaatttta atttcaggtg tagtataaag ttttggtaaa
    15541 gctttaatca tactttctag atcaaaacct ttataaacaa gctccaaggc tcttaaaaat
    15601 gcataaattc catcatcata accaaaatat ctatgtttaa agaaaatatg cccactcact
    15661 tcagcagcta aatcaatatc tttttctttc atcatttttt tgatattaga atgtcctgtt
    15721 tttcccataa aaatagttcc aaatttagcc acttcatcaa aaagattttt agaacatttt
    15781 acctcaccta aaatgcgtgg attagggata tctttagcaa acaaataaca aagctcatcc
    15841 ccacaaaata catgagtttt actcaaagca accattctat cagcatcccc atcaaaagca
    15901 aaagctaaag aataatcttg attttgattt aaaaattctc taatcgcact taagttttct
    15961 tcttctgtag gatctggagc atggtttgga aactgtccat caggctctgc aaacattaca
    16021 tgagctttta aatttaaagc tttaattaaa ggctctatca ctactccagc cgcaccattt
    16081 gtgcaatcaa caccaaattt ataattaaaa tcctttaaaa agctaaattg ctcgcacata
    16141 aatttcacat aaaggtttaa aatatcgtat ttttctactt ctaaattttc ttcaatatca
    16201 tcatctaaat gcttataaac ttcttttgaa aactctttta actctacgcc aaaaaaactt
    16261 tctttattga tagtgatttt aaaaccatta taatcttttg ggttatgaga gcctgttatc
    16321 ataacatttg catcaaattt caagccctca taaagactaa aataccccaa tggagttggc
    16381 gcaagcccta tatcacagat ttttattccc gctttgttaa gtccactcac tagataatta
    16441 aaaagttcat ttgcactata tcttgcatca tagcccacac ttacattttt acagccttta
    16501 tttagcatgg tttgtcccaa gcaaaaacct atagctttaa cgcttttttc attcagttct
    16561 ttgccataaa gtcctcttat atcatattct ctaaaaatca catctaacat ttttttcctt
    16621 caaattcatc tcttctttaa cctaaattta tcgtttttct aaagcaaatt tggatagaaa
    16681 agaaattttt gctacaattt tacattaatt tcactaaatg aaggaaaatt tatggatgaa
    16741 gaattagaaa acgaagaaac gaaaaagaaa aaaggcggtt cacttgtaat tattattgtt
    16801 attttacttt ttgttttact tcttagtatt atgggagtaa ttgcttggct tatttcaagc
    16861 agttcaagtg atgaaagtga agtcaaagaa gccccaaaag aagaggcaaa aactgataaa
    16921 cctaaagttt cagctcctac tcagcgaggt agtgattttg ctaatatagg tcctatgtat
    16981 ccacttgatc cttttaccct aaatttactt agcgatagcg gctcaagata tgtaaaatgc
    17041 actatagaac tagaacaaaa tagcgaactt ttaaaacctg aacttgataa aaaagtccca
    17101 gtgattcgtg atattattat tcgtacatta acagctaaaa cctttgaaga agtaagtaca
    17161 caaaaaggca aagaacgttt aaaagatgag ctagttggaa aaatcaatga aattttaacc
    17221 gatggcttta ttaaaaatgt ttattttacg gattttgtag tttcttaatg cgtgtaggct
    17281 gtgatatcat cgccatttct agaatagaaa aaattcattc tagacatggc aaaaattttt
    17341 tggataaatt tctaagccca aaagaacaaa tactcattaa aaatccagca actctagcag
    17401 gtctttgggc tgctaaagaa gccgctagca aggctttggg tgttggaatt tgtgaattat
    17461 gcagtttttt tgatattgaa atatcaaaag atgaaaaaaa cgcgcctaaa ttaaaatatt
    17521 ctcaaaaaat tacaaaagat tttaatatca ctcaaacttc cctaagtatt tctcatgata
    17581 atggttttgc tatagccata gtggctatag tttgattatt ttcctatagt ttgcttgtct
    17641 aaatttcttg aaagtatgaa atccaccaca ggttgttctc ttttgtttgc tcttttacaa
    17701 tgatcttttt gaaaaaaatc tgtgattttt ataacaatcc ttgcccattt tttgcgattt
    17761 ctttcacgcc acgcatgaga agaaacgctc tcccaagcat agccattaaa caagcttgca
    17821 tttacaaaat gatctaaggc tctaacaccc tgtcttgctc gtgcggtatt aaaaaaaatt
    17881 cctataatca cgataaaaag atatcctaaa actgctaaag gtactattgc acaaagcaga
    17941 atagtccctg ctaatttttc ttttaagctt ccttttaagg tgcgttttac acgacgacga
    18001 aaattggcgc gaattttagt tctaactctt ttcatagctt tcttttgcta aattttatcc
    18061 tcataccatt agccgaacgc actgttaaac gccctactac atcaggtaca aaaccttctt
    18121 caagttctag tttgtaagtt tttaaaatat tagccaaaat caaaatcgct tcttgcatag
    18181 caaaaccttg tcctatacaa attctttccc ctaccccaaa aggcaaataa gcatcttttt
    18241 tgtactctcc ttcaaaacga gaaggattaa atccatgcgg atttgtccaa aattcttcat
    18301 gtctgtgtat cagccaagga gcaatcacca ccccagaacc ttttttaata agcttatctc
    18361 taacttgggt atcttttttt gcctctcttg caaaaaaacc aacaggagga taaagtctta
    18421 aagattcttt aaaaatattt gttaagtatt taaactgtct tagatgcgaa atttcaatgg
    18481 ctccaccctg taaaacctga gtaatctcct cgtaagcttt ttcttgctcc ttaggataaa
    18541 gactgagcaa ataaagcgtc catgtcaaag aacttgctgt ggtttcatgt cctgctaaaa
    18601 aaagcatagc cacttgatct aaaatttcct caaaagaaaa acgcttattt gtatcagcat
    18661 ccactactaa aagcaaagat cctaaaatat cttcaaattc tgcattatct gccatatcat
    18721 atcttggttt tatgatatca cttaaaacct gtctgatcac atctccggct ttagcacgct
    18781 tacgatctcc taacacataa gaaagccatt ttggaaaaca aaacatacga cgcatggctg
    18841 tatgcacgct ttgctcttga aaagtcacaa atgcgtttaa gattttttta cctttttcct
    18901 catcgagttt tgaagacata atggtgcgaa aaatcacatc agcggtaata aaagtcatag
    18961 cttcatctac ttcgataaca gcatgatttg gatacttgct aaaacgatcc atcatatctg
    19021 ccacagcttc actcataaga ttaaacactt tattgatacg agtcatttca aaacttggac
    19081 gcaaaagctc tctttgtttt ttccaaactt caccatttgt agtaaaaata ctctccccta
    19141 aaagcggact taaaagctca tgtaaaaatg cacttttagg aaattctcta acctcatcaa
    19201 ccatcattct tttaacttct ttagtgtcat ttatgacata aagatcaaaa tttggcatct
    19261 tcacatagcc tgtttgcatt ttataactac gctcataaag cccgtcaagc caagatctac
    19321 gctttaacaa aaaagttaaa agcgtagaag ctttattttt ataaggtttt ggaaaaaagg
    19381 ggcattcact catattttta ccttttcttc taaaaattta ggcattatga tgaaagaaaa
    19441 aaaatcataa tcacctttaa cactaatact ataaagatat aaaaagtgcg ctttgttttt
    19501 atctcttttt atttttttat actcatgttt ttcatataaa gtgtgaaatt tagcacttaa
    19561 aaatgggggt gtaaatttag catttacgcc actcgtgcgg aaaaaatcca cttgaggaaa
    19621 acatgctcca tcaataatcg atgtgtaatc ataccatttt aaatcaaacc ttgaaacaaa
    19681 ttcaagcttc tttctaaatt catccgcttt tttttgataa ctcactaaag gaatgcattc
    19741 tcctagagta agaattttta acttatgaag taaagataaa tctaaatttt gtcttaaaat
    19801 acactccaaa acttctatac aaactatagt tccaacacta tgtgctacta aaacaagttc
    19861 ataatcttgt ttattttcat tttgttttag cttatctact atggtattcg caaaaagctt
    19921 gattctttct tgcatagtgc ctgttttttt atcttgccaa gtagcacaaa aagcacaaat
    19981 tcttgctatc caaaatacag ctaatttctt acctaattta aataaaaaat gatttagtaa
    20041 aaatcctaaa aaacatccta tgatgatagc taaagaaaaa tgcatataat tttgcaaaaa
    20101 agcaaaactt tcaaaagcca aaaccaaaga aaatagtaaa gaaaataaca cataaaaaaa
    20161 aggataataa cctgtgataa gttgataaat cgactctttg ccaaatttga taaaaagccc
    20221 tgtgatagta taaattctaa aaaaactata acaatctgcc aaagcatctt tataattttc
    20281 tgaccaattt ttcttaacaa tatcattcca tgttaaaaaa tgatatttag tttgcactcc
    20341 ttcgcaagaa atttgaaaaa aaggaaattg ttcatttttt tcaattttac ttaaatcagc
    20401 tttaatgtta aaagcatgag aataatcttt taggtttttt ttaaataaat cataataaaa
    20461 tctataactt ttaggatcat atcctgctat ataaaatact tccctatcca taaaatattt
    20521 ctttttactt ttaattataa caactttgct ttaaaagctc tcttaatcaa agttttttag
    20581 tcttatttgt ctaaaaagaa atttttataa aaattgccgt tgaattgatt agtttgtaaa
    20641 agatattttt taaaattaca tactaaaaca ggattgggtt tataagcatg agcttcacgc
    20701 caaaaaaatt gaagtttttt tggataagat aagccttcaa aatcataaaa agcattgcca
    20761 caaaccttag tcggacagcc ttctaaaata gcactaaggc ctactgttga atttatagta
    20821 atacaaccca aagcctttct taaaagaact ggcaagtggg tatcatgaac atataaaacc
    20881 cttccttcta catgatattt ttgacttaaa tcatttatga gtttagaata attcttatag
    20941 cccctatcca tgggatggtg tttaaaaact agataagatt tagctcttgc atggtttgca
    21001 aaagaaagta tggtttcctc tataaagtgc tctatgcttt ttttgtaatg atatttaatt
    21061 tgcgtatcac tataaacttg taaaatcgcc aaaaagtact ttttttctaa attataaatc
    21121 ttttcattta gttttttttc tgtaatctta taaagatact ttctatacaa tgatctaaac
    21181 caaaataaaa attcaaaagg atataaagtg cgatgatgaa gtttgttgtt aaaaaatgga
    21241 gccaaaataa aagcaaacaa ccaatacaaa aaagcatcaa aagccataaa tttaaatcca
    21301 cctggaattt cttttatgct ttctttggta aaaatatttt gagaaagata aaaattttta
    21361 tcacgcagta aagaagaatt tgcattcacc ccatcttttt ccaaagtaat acaataaggc
    21421 cttaaatatc cttcttcaaa aatccatatt tcaattccta attctttagc cactttaata
    21481 gccttagcat gtataatgcg acaatcatta tacattaaaa tagcatcgat ttttttattt
    21541 tgaaaaaaat ctctatagaa attttcaaga tctttttcat cacacttaca cctcgttccg
    21601 ctaggataga aaaaaaaatc tccgccgtta aaattgagtt taaaaacttt ggtttggttt
    21661 tttctcattt tcactgcaag atgatgaaaa aaatttccca caggcccttg caagagtaaa
    21721 acatttttac cgctaaattc ttttttaatt ttagtgctaa atctcatttc tttgctaaaa
    21781 attcataaaa tcttcttatt tttctaagca taaaagtttt aaaatctatt gccaatttta
    21841 tatatttttt tgaaaaataa gctttttgta aatttagcat tatatctaaa caaacttcaa
    21901 tttcacataa agtttttgtt ttaggattta tatatcttgg atatatgatc aaagcaccta
    21961 ctacaagctc ttctaggctt agttttcttg ttcttctttc acatctatat ttatcttttg
    22021 ttaaacccca gcccgcataa aaaggcatac cataagtaaa aactttttta gctcttaaaa
    22081 gagcatcaaa accacttgta gaagtaatag tgtgaatttc atcagcaatt tttatagcgc
    22141 tatcaatact gcaatctttt acaatctcat cacaaaattc caagatgagt gtttcatctt
    22201 ttaaacctac acggttgccg cttaacacat caggatgggg tttaaagatg atataagcat
    22261 cttgattttt agcacgcacc tccttaagca aatcaagagt agataagcca aaacccccta
    22321 aaatcatcga aacatcatct tcaacttgag cagggattaa aataatcttt tgtcctattt
    22381 tggcattgat ctttaaattt tcatgcttta agccattgta ttttgaaaag cggttctcaa
    22441 gtaagatttt tataatattt tttgccctat ttagcatatt ttcatcaaaa atttcgtttt
    22501 gcaaaagctc ttctaattta cttgctttat ttggatctat gtaaagtcct ttatcatcaa
    22561 cgtttaaaga aaaaggcctt gttaaatcag aacctagcga aattgagcgg ataaaaccat
    22621 cttcaactaa agaaatttta ggaataaaat ggagcaaatt ctcatcttgc gcttttttta
    22681 taagagtagt tttaagagcg ttataatcta tccttttacc ccaaatgaaa aatttatcat
    22741 tttctttaag tttatatcta gctaaagatt ttaaagaatt taaaaaaata attttattat
    22801 ctttggcctt aaaaaaaggc ctgataaaat accttttcca taaggtaaaa cctaacataa
    22861 aaagcctgtt agaatttgcc ttttctatat ctttatattt tgctaaagtt tgaatagtat
    22921 caaaaatatt acttttttga tttaaataag gattaaaata ctcgctataa agtatataag
    22981 cagcatagaa aacttcttct aaacttcttt tttgcatcct tcttttacac tctaatttat
    23041 cttttgttag accccaacct gcataaaaag gcatgccata acaaacacac tcacatcctt
    23101 gcatcaaagc ttcaaaaccc ataccagaag ttttggtata aaccttatca aaaaactcaa
    23161 gcaaggctat gggattaaaa ttttcagtga ttaaaataca ttctttaggt aaggaattta
    23221 tatctaaatc actttgtttt ttaccgctta aaacgtcagg atggattttt atataaattt
    23281 tagaatcagg attttctttt atagcatctt ttatcatatc gacggtttta aaatctttag
    23341 cgagcccaaa ttcaagcgag gcatcatttg ccgtttgagt gatgattaaa acgcgttttt
    23401 catctttttg aaaataatca tctggaatat cgagattgtt attatacttg ctaattttat
    23461 attttttgat aagctctata acttttttag cttgcttgat ttcttcatct ttaaattcat
    23521 aagtatttaa aagattttca agctttgaag gtgctgttgc atcataataa atgcctatat
    23581 catctttaac catagaaaaa cttgggctat tttcaacccc taaatttaat gagcggataa
    23641 atccatcttc taaaagtatg aatttagcct tatatttttt agctaaattt atagctttta
    23701 aacctgattt tttgcgtccc cagccaagga aaagatcatc tttatttatt tttgattttt
    23761 tcttatacaa agaaatggtg taaaaatttc taacattagc aataagtttt tttgatattg
    23821 agtaatgctt cacaatgcca atttctttat tataagttca actttttctt ctaaattatt
    23881 tcgacaagaa ttattgatca ctaaatcagc ctctggttta tcaaattcta tatcaacacc
    23941 aactacatta ttaatttctt tatttaaagc cttagtataa agcccttttt gatctctttg
    24001 tattaattca tgcatatcgc attctatata aatttcataa taatttttta attgctttct
    24061 attgtaatca taaatctcat taaacattga aatcgtagtg acaataacca tcataccttg
    24121 atcgtttaaa aattttgcaa atttagctct tttcaaagcc atatctatgc gaccttgtct
    24181 atcgtatgca taatgtccta atatttctct taactcatct ccatcgagat aaataaggtt
    24241 tttatatttt agttttaatt tctcatacaa agcttgacct atagttgttt ttccacttcc
    24301 agctaaacca gtaagccaaa taatataagg actatttatc aatttgcacc tctaaatcac
    24361 tcataaaatc aatttcacac caattgccat caatttccac tgcttttgcg ttgttgtatt
    24421 tttcaattaa agcttgcaaa aaacttgtca tgtacatatt ttcaaaattt ttattatcat
    24481 ataaaatatc tcgatcaagc atttcataaa aagcaataac ttcggaaaga aattgataag
    24541 aaaatttaaa aagtcctata tattgagctt ctatctcatc ataggcatta gctttttttc
    24601 caagttctat aatataacca tttgtcatct ttaatgtttc agcatcttct aaaggatttg
    24661 caaagcgttt gctccaaagc ttacgccaag acttatcaac tactatagca agttcttctt
    24721 tggcatttat aagcttttgc acgcaatctt gagaataaac aatatccgca taagaaataa
    24781 tcaaatcttg tttttcttct atgcatttta atataaaatc tttagcgcaa aaaaaagtat
    24841 gaaccatatt ggttttatca tattttgaat taataaaaaa atgctcgata tcatatttat
    24901 taagataatt ttttagcact tcgtttaaat atccacccac aacagctatt tcatttatac
    24961 ctgctgattt taaagcttcg atttcataat ctatgatttt tttattctta tactcaacca
    25021 tacactttgg ttgatctttt gttaaaggca tcagccttga tccaaaacct gctgctaaga
    25081 taattgcatt catattattc cttgattaaa ctaaaccact ctcttaaaat ttgaatatta
    25141 ttaagcccat tttctctttc aatatgccac attataccaa aaatattttc atacttatgt
    25201 ttaaaagctt ctatggtatt atcttctgct aagcaaagtt ctacaagatc ttcgcctaat
    25261 ttttcaatag caaaattatg aaaagaattg cttataaatt tttcttttga gaaaaatact
    25321 tcatgtttgc ctatatgatt ttcacaagga cttatatggc tgttaaaata atgagctatc
    25381 atctgagccc ctctgcaaat tcctaaaagt ggtatttttt cttctaaaca aatttctata
    25441 acttgctttt catataaatc tctctttttg gataaaacat taggactata aaaacttaaa
    25501 tcattgccac cacttaatat tacagctttt attagatgtt tataataaga aaaatctatt
    25561 tcatagctaa gaggaagagg agtaaaattt ttaaataaat ctttattaaa taattttccc
    25621 caatccaaag ccaaacattc tctttcttca tgatagcttt cgttgcaaat aagcctttga
    25681 gtaataccta taaacaaaat atttgctcac tttcacattc tatatttatt tttttagctt
    25741 ttaaatattt ttcaaaattt tcttctccaa ctcctataac agcaggcatt ccaagttctg
    25801 aggcacgaat ggccatatgt gaattagcac ccccataaca tgtaataagt cctgctatat
    25861 tttttgtaaa taaataatca tatccgggat ctgcagcata aattaaaaca atctttcctt
    25921 ctaaatcttt atcattttcc tttgccgtaa atgcagtaat actcttttgt gtaatgaaat
    25981 ttggaataat gctatgatta taaaaagaaa aaatttcatc ggcattgcaa agcaaagaag
    26041 gaagttttat agcttgtgta agttcatatt cttttttatt gcgattaatt tcttctacaa
    26101 actgctcttt tggatttata gaataaagac tagaataaag atttaaaatg ctttttatat
    26161 caagatgagc caaatcttct ttttcaatgc cataatattt gcctaattct tctatataaa
    26221 ctatagcttt agaaagcaat ctagtgaatt taaatttaac gagctctcta ccctcgatag
    26281 cctgttttaa aaaatcaaaa aattcacaag cattaatctc taatccatgc tctctaagta
    26341 aaacatttaa agcttttgtc ttttcttttg aaaaaacaaa agctttatct tgtaaataaa
    26401 ctttactatc tttttgatcc acatcaaaat aaagctcaaa atcttcatca tatcttggag
    26461 ataaaatatt ataagttcct gctcttaagt gtccaaaatc tttcaaaaat tgatctttgt
    26521 tgtgaaaatt aagatggttt gtttgtttac ttaaattttt gctcactgta ttgagtgaat
    26581 ttaaaaaatc atctttttcc tctttggtta taaaatcaat ctcaactaaa gaatttaaaa
    26641 gttgcattgc tacaaatgca gccctagcca cccccgcaaa aggcaaggtt ccataacgct
    26701 tgcattcttc aataagccaa taaattttat caattaaaga aaaattagaa ttaataatgc
    26761 catcatatct ttcttttagc ttataagctt tttgtatatc ttttaaataa aaccctgatc
    26821 taggattaat aatcttattt gtaagttcca ataatgaaaa ttctaatctt ttgatttcat
    26881 tttcattaaa accatgattt aaaagttctt ctaatttttt agaactatta aagtcataac
    26941 aagaataaac aatattaaat tcaatcttat cgtgcaattc atgattttta ttaagcttat
    27001 ctaagtaaaa attgacaagt ttttgtgcaa tattttcatc taattttttt ggtataaaag
    27061 aattaaaaga taatcttaca tctacataag gaatgcctaa aaaagaatgg attaaaggat
    27121 gggatcttag atctctataa ccataattat ctctttgata cgcccagata ttatctgtga
    27181 tgatttcttt atataaacta aaagctaaac gcctaggtct taaccctatg atttcagctg
    27241 gattccaatc aggcattacc ccaaaaatag ctttatctcc caaaactcta gatcttgatt
    27301 cttttaaaga ctcaaaacgt ttataaaatc tatataaagc ttcttttggt aaagaatgaa
    27361 ataaattatt tttttcatgc ataaccaaag gacgcacttg taagcaaaaa agttcttcct
    27421 tatcatcttg aatagcaaat gcaaattcaa catctaaaaa atgacaatca tataaaactt
    27481 ctaattcttt tataagttct ataatttttt gaagtctaat atctttaaat tctaaataat
    27541 ttctgtaatg atagtaagtt tttgcactct tactgcttcc atctgtaata gagctatttg
    27601 aaccattttc atcatattga agacaaaaat aaggggaaaa attatcctta tcaacactaa
    27661 aaccaactcc acaaagagta atgttttcaa gcataggttg aactaaaatt tcatcgcttt
    27721 ttgatggcat agaattggca acttcatata aagcttttaa taactcatct ttagaatcag
    27781 ctttaatatt tgccaaagaa agaaaagcac ctgcattgga gtttttcata ctatcttcac
    27841 ttaaagaaga acttcttata atgagtctat tagcctttaa ggtttgaatg tcctgtaaaa
    27901 ctttatcttc atttgatatt aattcttcaa gcgaagttaa aaccaaaggt agaacttttg
    27961 ctttttttaa ttttgtttgt aaatttttta aattttgtgc tttggtttta aaatttaact
    28021 ccgccatgtt tttccttagt tttatatttt tttagcactc caacaacgag tggtatattt
    28081 tatgctaaat tccttaggaa gtctttgtga aattttatca ctaattttat taaaaagttc
    28141 acttccttca tcagtctcca aatcccaata aggattttta acacttttcc atgcattaat
    28201 ataattttca atgctttgat gaaaataaaa atcctcttca atataaacaa tattatcaaa
    28261 aagatccttt cgactctcta taattggtct ttgatcttct cttcttgttc ctcttgtata
    28321 atttggtaca aattctacaa tagtatcttc agctattttt tgcacaggat cgtttaaatc
    28381 cctgtgattc cacatacaag aaaaatatcc ctctgatttt aataagcgat gcgcttcctc
    28441 taaggcttca tttctatcca ttacattaaa actactacca aaagtcaccc aatcaaattc
    28501 actattttgg agtgttgagt ttaagcctgt tgctctaacc cagtcaatct tttgatcctt
    28561 ggttctttct atcccgatct cacgcatcgc atcatttggt tctacagata ctaccctaca
    28621 tcctctttct aaaagcataa tgcttaaatt tccagttcct gcgccgatat cagcgacttt
    28681 aatatctttt tttccaacta aactaataag catatctata gtttttggag cataatttgg
    28741 tctatagcta taaaatttag catgcttggt ataatcccac acttgttcta ctagtttttg
    28801 cattttattt cctttttttc atctttaaca agcttgatga aaaaaaggag gtattttatg
    28861 cttttctagc tgtccatgct cttattttat aaggaatctc tatactttgc atatgagaaa
    28921 ttttagcttc tatcatctct aaaatttcct tccatctttt ttcacctgct tgtgcttgta
    28981 tatcatttac agaatgccaa gctccaagat aacgctcttt atcccaaaac tctttatagt
    29041 cacactccat aaaaaagcag tctgtgaaat ctcctgttga aacaagaatt tcttcccatt
    29101 ttttaacatt ttgagtgcca ctgcttacac gagcaagatc tggaacaata tgtttaatct
    29161 ccttttcaat ttcatcaaaa accgaaccct ctacaatgtg gcgaggattc caaatcgcag
    29221 taaaataccc cccccctgtc aatatacgat taaattctgg gagagatttt ttaggatctg
    29281 tccaatggaa agaactagcc atgatgaccc aatcagcttg attattgctc atgcaggttt
    29341 cttcgccact ccctttatgc caagaaatat ttgataaatt ttgtgtaaat ttttgtcctt
    29401 cttcgcgcat attatcgttt ggttccacag cactaatttg gcatccaaac atttctccca
    29461 acatcttagt aagttttcca gttccagctc ctacttcaac aatatttaaa tctttaaaat
    29521 ttttattttt atcattgata caagctacaa gtttttcaag taaaaatgga ctataagcag
    29581 gtctattatg ataatgcttt gcaacctctg taaaatcccc ttgtttcata ttatttcctt
    29641 tctctaaatt aaaacataat tatatctttt ttttattaat ttacaaaatc tttctcctga
    29701 atatcaccca tccaactcct tgcacatttt ttcaaattct tgatagtatt tccaagaagc
    29761 tactatattt ggatgatgtt gcttaataca aatcaactct tgatcaaaaa tttttttcca
    29821 ttgcctcata agagtttgat tatttttcaa ataagctaat atttgatttt cacatattaa
    29881 acattttgct tttaaatcaa atttaacctt catcttggat ataaattctt ctaaataaga
    29941 ctgaatacat tttatcaaag tcaaattatt ctctagataa acaaattgtt ccttaggaat
    30001 acaaaaaatt aaattttcga aaggtagatt atctttaaat aatacaggat taattttctt
    30061 ataattattt attttgtgaa gcttaaaaaa ctgtcttgta gtaattaaaa tttcaataat
    30121 tttaccatcg gcataattta ccccaaaatt ctccaaatct acgcataaaa taagtggaat
    30181 tgataaaaaa gctcctaaca tatcatatac tacggtatca tagaataaat tttttgatat
    30241 ttgtctaaaa tggtataaag catttaattg actaaaagta tgataagcat attcaggttt
    30301 aatactagcc atgtctaagt aagtaatttt ttctatttta aaaaattgtg ttaaaaaatt
    30361 taatctaaaa aagctttccg cataaatcca ataagttttt atatgatcac aggttggcaa
    30421 aggagattcg aaataatatg tctctctatc taaaactctt tctataggtg tatccaaatc
    30481 aaaacgatca agtctattcg actttaaatt aatatgattt aaacccgttt ttaatctcga
    30541 aattggatcc ctaaccaaat atactacagg tttattttta tttaaaagat ttaaaaatct
    30601 tttaagatct cccctggaaa cataaacatg agtgtaatca gtatatgcta tgacattata
    30661 ttttaaaggg ttatttagca actgcatgaa aatgttagaa tatataataa atggattatg
    30721 atgaatatat ttgcaaatat ttacttcgca aagttccaaa tacattgtca ttgctgcatt
    30781 acccgataaa gcagaagaaa gccacacaaa ctcatagtta tctggtaaag gcaaattcat
    30841 ctcccaagca agttcagctg gtatattatg ataattgatt ttttcattct tatcatttaa
    30901 tttcttagga tcaagtaatg aaggataagg atggttttct tttttgtatc tttctttgaa
    30961 atcatctgat aataaccatt cttctataag atcgaaattt tgtataaaat aattaaaatt
    31021 gtgaaagata ttatctaata ttgctttata atcttgatga atttttaata tattttttat
    31081 tcttgaaaat tcttttaaaa ataattgttt attatctatc aaaccttcaa ggatactaga
    31141 gttaatctga tcaaattctt taaaaatttc tctaaaaatt tgaaattctt tatttgcttt
    31201 tttaatatta ttttttaatt taaatccacc ccctgtatac caagtttgat aagctttgat
    31261 taaaacttca cctagcatat aagacaaatg aaatttatat cttaaagctt gctcataatc
    31321 actacatgct tctaaacttg ggtatttgag ttgaggaaaa acttgtatgg tttgttgata
    31381 aattttttgt tcttttttgt gttgtttttt aattttataa agttttttaa ataatgctat
    31441 ataccccccc ccactactac tgtttgtaaa atcaatcata gcttgaccta gtttgtaagc
    31501 aagatgattt tttactcttt ctatagccga attcggatta tgcataaaag attccttata
    31561 aaaattttta tttttaatac aaaaataagt tattattata cattataatt atataataaa
    31621 aaccaaaaga aa
//
LOCUS       DARBBO010000007        31110 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.007, whole genome shotgun sequence.
ACCESSION   DARBBO010000007 DARBBO010000000
VERSION     DARBBO010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 31110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31110
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.007"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..325
                     /locus_tag="SB854_000222"
     CDS             <1..325
                     /locus_tag="SB854_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG0956271.1"
                     /translation="QKLKLCELLNSNLSGFNLKKIKKPIIKKDELKLDLNYSKMYAKL
                     GLNTKDQQGLMAYLMNVFNELELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKLVN
                     LLISE"
     gene            330..2126
                     /gene="glmS"
                     /locus_tag="SB854_000223"
     CDS             330..2126
                     /gene="glmS"
                     /locus_tag="SB854_000223"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEG0956272.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGGLSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQVDEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            2129..5254
                     /locus_tag="SB854_000224"
     CDS             2129..5254
                     /locus_tag="SB854_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEG0956273.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPGIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIKSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFVLSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVEQPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINANLGFNLAKNIEQDDYQASFSTFVIFEKRIY
                     GRTLENKASFVDFPIAFIQKYKLKDNILSQGFNSEFLYKNNVFWQFMLMNRFSHNAYE
                     LHLMSSVGKRF"
     gene            5310..6701
                     /gene="fumC"
                     /locus_tag="SB854_000225"
     CDS             5310..6701
                     /gene="fumC"
                     /locus_tag="SB854_000225"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEG0956274.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDGIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFISSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDVAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPHIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGSKA"
     gene            complement(6731..7774)
                     /locus_tag="SB854_000226"
     CDS             complement(6731..7774)
                     /locus_tag="SB854_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEG0956275.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITM
                     FYGYDGILMGVIFAVSSLIPAIGGALIYVPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(7778..8785)
                     /gene="ruvB"
                     /locus_tag="SB854_000227"
     CDS             complement(7778..8785)
                     /gene="ruvB"
                     /locus_tag="SB854_000227"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEG0956276.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNIFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMGANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            8876..9286
                     /locus_tag="SB854_000228"
     CDS             8876..9286
                     /locus_tag="SB854_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HEG0956277.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            9287..9645
                     /gene="ssrA"
                     /locus_tag="SB854_000229"
     tmRNA           9287..9645
                     /gene="ssrA"
                     /locus_tag="SB854_000229"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            9847..12119
                     /locus_tag="SB854_000230"
                     /pseudo
     CDS             9847..12119
                     /locus_tag="SB854_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866779.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            complement(12262..14346)
                     /locus_tag="SB854_000231"
     CDS             complement(12262..14346)
                     /locus_tag="SB854_000231"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HEG0956278.1"
                     /translation="MQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKLKFIAIYCT
                     NLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLERYFNEITS
                     ELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLNNLSFSLAV
                     KICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPGYKLLASAA
                     FRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVEFLNTHMKI
                     FHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFDAVEKEDIL
                     IIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASDGKQVTVMV
                     ELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLKFYMHLSTG
                     NYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPNQIKEKVLE
                     MIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCLKPDEEYSK
                     NIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIYDERSKAKL
                     AQFLRLQLSDNVLAYKLKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTLKKDTDQSR
                     ATHLASKLFKEN"
     gene            14534..15049
                     /gene="nrfH"
                     /locus_tag="SB854_000232"
     CDS             14534..15049
                     /gene="nrfH"
                     /locus_tag="SB854_000232"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HEG0956279.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            15064..16896
                     /locus_tag="SB854_000233"
     CDS             15064..16896
                     /locus_tag="SB854_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HEG0956280.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKATEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGEKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            17032..17586
                     /locus_tag="SB854_000234"
     CDS             17032..17586
                     /locus_tag="SB854_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956281.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            17650..17739
                     /locus_tag="SB854_000235"
     tRNA            17650..17739
                     /locus_tag="SB854_000235"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:17684..17686,aa:Ser,seq:gct)
     gene            complement(17812..18804)
                     /gene="ceuB"
                     /locus_tag="SB854_000236"
     CDS             complement(17812..18804)
                     /gene="ceuB"
                     /locus_tag="SB854_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HEG0956282.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVVDRNVILGNK
                     ERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(18817..19572)
                     /locus_tag="SB854_000237"
     CDS             complement(18817..19572)
                     /locus_tag="SB854_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0956283.1"
                     /translation="MIKLKNITKFYDNKVIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKNYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNTNDKIKINEALEYMELSNLRNEFLDTLSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQINGKKICIYF"
     gene            complement(19569..20507)
                     /locus_tag="SB854_000238"
     CDS             complement(19569..20507)
                     /locus_tag="SB854_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HEG0956284.1"
                     /translation="MRKKMLILSFLTLNMIGIFIFVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            complement(20500..21468)
                     /locus_tag="SB854_000239"
     CDS             complement(20500..21468)
                     /locus_tag="SB854_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0956285.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVSIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKVYA"
     gene            complement(21554..22543)
                     /locus_tag="SB854_000240"
     CDS             complement(21554..22543)
                     /locus_tag="SB854_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HEG0956286.1"
                     /translation="MRKIALFLSLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSQATQMQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFTYSFNSLGTNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDFPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPESKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHNNKGAIQVDLGYDIFNNGIYWYVQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            complement(22540..23115)
                     /locus_tag="SB854_000241"
     CDS             complement(22540..23115)
                     /locus_tag="SB854_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEG0956287.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVEKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSELK"
     gene            23177..24484
                     /locus_tag="SB854_000242"
     CDS             23177..24484
                     /locus_tag="SB854_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEG0956288.1"
                     /translation="MKYTELLQLQTFFSQFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSAIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDKKNLIIEALRHIDKSYRVVKPNVILEPLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFSPKRSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDYKQEDLVANFYY
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRDIPSAHTLIVSNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            24486..24824
                     /locus_tag="SB854_000243"
     CDS             24486..24824
                     /locus_tag="SB854_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956289.1"
                     /translation="MPVSPLGNINYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            24833..25558
                     /locus_tag="SB854_000244"
     CDS             24833..25558
                     /locus_tag="SB854_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEG0956290.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGYLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASVIGTILGIFVYSFWLSLLCSFFVAIFAVIGDLFESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVTFL"
     gene            25555..26625
                     /locus_tag="SB854_000245"
     CDS             25555..26625
                     /locus_tag="SB854_000245"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEG0956291.1"
                     /translation="MILFGSTGSIGINALKLAALKNIRISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHDRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKSIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     RYKIKDLNQVSVKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAVDFSKMPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDIAKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            26627..28021
                     /locus_tag="SB854_000246"
     CDS             26627..28021
                     /locus_tag="SB854_000246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deacylase"
                     /protein_id="HEG0956292.1"
                     /translation="MKFFLTILFFITSIFALELDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDTEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINKELEVKLFDDR
                     ILLSLKNPRKLINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHSKDESGILV
                     HKKNMQTQYSLDMAGKIYRAEFYELRGANLQQLLEANINSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            28018..29025
                     /gene="tsaD"
                     /locus_tag="SB854_000247"
     CDS             28018..29025
                     /gene="tsaD"
                     /locus_tag="SB854_000247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEG0956293.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKMLKQCKEHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDASLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNTPLKHSKELAFSFSGLKNAVRL
                     EILKHENLNEDTKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNANLKLAPLKFCSDNALMIARAAVDAYEKKEFVSIEEDILSPKNKNFSR
                     I"
     gene            29026..29541
                     /locus_tag="SB854_000248"
     CDS             29026..29541
                     /locus_tag="SB854_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEG0956294.1"
                     /translation="MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNL
                     KTLINDISIYTLKNDHLNSIKTMSNVSGVENVDLSNFNGTKEVNFRVGDDKKCLKLVF
                     INKVDFILMGISSNEASKNAIINAANQSHEDLENVHFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            29541..30782
                     /locus_tag="SB854_000249"
     CDS             29541..30782
                     /locus_tag="SB854_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG0956295.1"
                     /translation="MIVSKTYEIDSCDDVELGIKRESKLEFKLWYDDEKTPEALVFVV
                     QGMGDDISSIQYVGDYMVRQFNTAVVGVNYHCIGNRPQTGSSFFMDDIDKLILKASCE
                     AADIKLPYDVDKIQDYKAMSEIFHFVNNQIVEGKQKGNFTPNYFLNLHVSLQPTKNEY
                     QNFGIMQAQDLLNVALYLKKHAPFDTMGGGIPIIMIGGSHGGYLAHLAAKIAPWLVDG
                     VLDNSAYAKFLWRVVGFGKEIDFMQYSEFATFDFFHHIKTHCSTKTFWTSNSSSPRFF
                     SPARRKIRNLLEEDHLLKQSKCLKTCFISYHSLYDEYVSLKEKTMFYEELEKLGFDVT
                     LHSITKESQVDGKFIKNLNHGMGIPVKLLIKKELPLMLEKIKQNLKKDYKEKCISYPC
                     EDLLYQFSEKDDKILLKIDKI"
     gene            30794..>31110
                     /locus_tag="SB854_000250"
     CDS             30794..>31110
                     /locus_tag="SB854_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0956296.1"
                     /translation="MTILEKNIQALLSGVNEPLGNRLLNFIQNKTCSRFSINENLNIY
                     DKTHNVFMYENLEEEINFFYQSILEKTPRYPFICIYGIGNALLIKNLAKHYKHLFVFE
                     SEI"
BASE COUNT        11018 a         4302 c         5330 g        10460 t
ORIGIN      
        1 gcaaaaacta aaactttgcg agcttttaaa ttcaaatctt tctggtttta atttgaaaaa
       61 aattaaaaag ccaatcatta aaaaagatga gttaaaatta gacttaaact attctaaaat
      121 gtatgccaaa ttaggtctta ataccaaaga tcagcagggt ttaatggcgt atttgatgaa
      181 tgtttttaat gaacttgaac ttgttttatg tgcagcaaaa attcaaacca taagacaaag
      241 gacgcgtaat atttttattt ttcaaaagaa tgaaaaatta gaacatagcg agcaaaagtt
      301 agttaattta ttaataagtg agtaaaaaaa tgtgtggaat cgtaggttat ataggaaata
      361 atgaaaaaaa acaaattata ctaaatggac ttaaagaatt ggaatatcgt ggctatgata
      421 gtgcgggtat ggcagtgatg caagaaggag ggctcagttt ttttaaagct gtaggaaagc
      481 ttgaaaattt ggcgaataaa tgcacggatt ttgaaagtca aggttatggt tttgctatag
      541 gtcatacaag atgggcaact catggtaagc ctactgaaat caacgcacat cctcatttag
      601 gacagtattc ttgtgtgatt cacaatggta ttatagaaaa ttataaagaa atcaaagata
      661 aacttgaaaa agaaggcgtg agttttttaa gtcaaaccga tacagaagtg attgttcagc
      721 tttttgaatt ttatgcaaga aatttgggag tttttgaagc ttggcaaaaa accatcaaag
      781 aacttcgcgg tgcttttgct actttgttag taacaaaaaa agatcccaat catgtgtatt
      841 ttgcaaaaaa tgctgctcct ttgattatag gtaaaaatgc aaataaagaa tggtattttt
      901 cttcaggtga tgcgcctttg ataggaagtt gtgatgaagt aatgtatctt gaagatttaa
      961 gcttaggata cgcgagtaaa gatgagcttg tcgtttatga aaatgatatt ttaaaatcac
     1021 tttgtttttc taagctttca ggcgataagg cttatgcaaa aaaagacggc tttcgttttt
     1081 ttatggaaaa agaaatttat gaacaaagtc gcgtgatgag tgaagtttta atggggcgta
     1141 ttcaaggcga tgaagtcgtt tttgatgagc taaacaatga agatttaagt caagtagatg
     1201 aaatcacgct ttgtgcttgt ggaacaagct atcatgctgc aatggcaagt gcttatttgt
     1261 ttgaaagaat tgctaaagtt aaagctaaag tagaaattgc aagtgaattt cgataccgtg
     1321 aagcaattat aaaaaaagat tctttattta tcgttatttc tcaaagtgga gaaacagcag
     1381 acactttaga ggctttaaag attgcaaaag agcagggtgc taagactttt gcaatttgca
     1441 atgtggataa ttctaatata gtgcgtttag cacatctaag tcttttaact cgtgcgggca
     1501 tagaaaaagg agttgcttca actaaagctt ttgctactca ggttttaaca ctttggatgc
     1561 ttgctatttt tatggcacaa aaaagaaatt taaatgtttc tgctgaaatt aaagcacttt
     1621 tgcatactcc aaattgcgtg agtgtaaaac aggctttaca tgaaaaaatt catcgtttat
     1681 ccaagcgtta tttagatgga catggctttt tctttatagg tagagatgtg ttttatcctt
     1741 tggctttaga aggagctttg aaacttaaag aattatctta tcttcacgct gagggttatc
     1801 ctgcaggaga gatgaaacat ggccctattg ctttggctga ttctaagctt tatactatag
     1861 ctttaatgcc aaagcatatg ctttatgaaa aaacaaaatc aaatgttgaa gagcttattg
     1921 ctagggattc tacagtgctt agcatttcac ctttagaatt tgatttaagt gatgatttta
     1981 taaaaaccaa tgagcaagat cattatatgt gtgaattttt tgaaatgatg gtcattactc
     2041 aacttttggc gatggaaatt tccataagac ttggcaatga tgtggatatg ccaagaaatt
     2101 tggctaaaag cgtaacggta gaatagaaat gaaaaaattt ttttgtttaa ctttagtttg
     2161 taaacttttt gctttaagcg aatttgaact tcatcatatt gataaagtac ataagctagg
     2221 gtatagtgga gatactatta taataggtgt agccgatgat gcttttaatc aagatcatat
     2281 tagtttaaag gataagattt taaagtctac ttatcctact gatacagctg ggaaacagct
     2341 tatacctgat ttgaaaaaat caacacacgg aagtcatgta gcaggtatag ctgttggagc
     2401 aaagataggc gatagcaaac cttatggagt ggcttatggg gcaaaatttt atggagctgg
     2461 ggtgtttcca aatggctctt acactcaaat tcctgatatt tataattttt tcaaagatgt
     2521 gagtattatt aataatagct ggggtattaa tttttatcct tattttaatc ttaaggcttc
     2581 aaattctgga ttagtagatt gtactcaaac taatcaagga acaagctata atatctgtaa
     2641 tactcctttg gaatatgtta tgaaagcaga taaggttgct aatgatatga tgaggcttag
     2701 caaggacaag ggagtattaa atgtatttgc tgctggtaat gaaggaattc ttagccctgc
     2761 tttgcatgcg attttaccaa gttatgatga atctttaaga gcttggttgg ctgttggagc
     2821 tttggatgca aatgagatta ctttagaatc agatgggact ttaataatta aaagtcaagg
     2881 tttggctgat tttagtaatg gttttaaggg agctacgaat ttttctttag ttgctgctgg
     2941 agtaaatatt aataatgttg attcaagcac taatgataag tttacaaaaa aaagtggaac
     3001 ttctatggca gcacctatgg taagtggaac agcggcactg gtcaagcaaa atttcccttt
     3061 tttggatggt aagcaaattg ctgatatact attaagtaca gcaaataaaa attataaggc
     3121 tccaaaattt actgttaaac aagtaaccga tggaacaaat caacctaaat ttcttattgt
     3181 gtatatttcg caagatccac ctgggataga agatgaaata aaacgggatt taaaacagct
     3241 ttacaatgga atacaagttc aagttaatgg acaatggatt gattatagtg attatatttg
     3301 ggataataga gatagtgcgc agtcacaaaa acttaatact tccactatta gttctattaa
     3361 tggagtagtt agagttgaga aagaagaatt atttggacaa ggaattttag atgcacaaaa
     3421 ggcgttaaaa ggactgagta ttttagatgc aaacagactc agtgatcagg atgtattaaa
     3481 atatgagcaa gaacctaata cagcttatta tactataaac actgcaggtt atgatgctga
     3541 attttctaat gatattagtc aaagaaaatg ggatgaaagt actcatttat caagtgctat
     3601 taataaacct acacatttag ctaatcttaa catagggtta tctaaagaag gtgaaggtat
     3661 tttgattatc agtggtcaaa atacttatga gggtgcaact ttaatcaaac aaggagaatt
     3721 aaagcttaaa ggaaaagtta aaaataatgc ttatgtagaa caaaaagcaa tattaagcgg
     3781 taatggtatt gtagggcaaa atttaaacaa taaaggcata gttagacctg gaaatgaaga
     3841 tttgaatgat ttaaccgtgc aaggaactta tactcaagaa ggagttgatt ctaaattgca
     3901 acttgatttt ggtaattata aaaattctaa actgattgca aaaacttatg atattaagag
     3961 cgggaattta gaatatattc ctttacctaa atactatatc ttaaataagc cagtgaaaat
     4021 taatttagga gatttggaaa aaagtttatc atcttttaat catgttttga tacaaaatac
     4081 ctatgcttta aattttgatt ttgttttaag tgatgattta gtgagtatta ataaaacctt
     4141 aataaaacct aatttaaagc caaatgctta cgaaattcct aatacaagct tgggaaatgc
     4201 tttaagacaa ttgcgatcta gggcagactt gagtcagact tatcaggaat tttttgcttc
     4261 tttagataat ggaatagatg taaagactaa attaaataga atagaaggtt cagggtattt
     4321 aagcactttt agtaatcata atcaatctaa tttaatgcaa aataatatgt tatttaccct
     4381 tcatcctctt aatattaata attttgcaca aaacaataat atcttacttg ctagtactta
     4441 tttacctaga atttttagca atgaagaata tttttggcat cttactccaa gttataaata
     4501 ctataaagat aaagattttt caggtcaaaa aacaggtgct aatatctctt taggagaaaa
     4561 tttctcatca ggctttttag cttatgcttt atctctttct agcgctaaat ttaattttaa
     4621 taatggtagt gatttgaaga gttataacat ggatttattg cttaattata accatgattt
     4681 agattttata aaaatattaa gtggattagg tataggtgta ggatttaata ctcttaatcg
     4741 ttttgtagta gagcagccaa ttgaaggcaa atataaaaca ttgcaaactt cagcccagct
     4801 tggtgtaact aaagatatta ttttaggtca agattttatt tttaatcctt taatgtattt
     4861 tacacatagt tttttttatc aagaagattt taaagaaaat aaaagtcctt ttgctaaaaa
     4921 ttatgaaagt ttaaaacatc atagcataaa tgcaaattta ggttttaatc ttgctaaaaa
     4981 tatagagcaa gatgattatc aagcttcttt ttctactttt gtaatttttg aaaaaagaat
     5041 ttatggaaga actttagaaa ataaggctag ttttgttgat tttcctattg cttttattca
     5101 aaaatataaa ttaaaagata atattttaag tcaaggtttt aattcagaat ttttatataa
     5161 aaacaatgta ttttggcagt ttatgttaat gaatagattt tctcataatg cctatgaatt
     5221 gcatttaatg agttcagtgg gaaaacgttt ttgaaagtat ttattttttt agcttataat
     5281 aaataaaatt ttaatcaaag gaaaaaatta tggaatacag agttgaacat gataccatgg
     5341 gtgaagttaa ggttccaaat gacaaatatt ggggagctca aactgaaaga agttttgaaa
     5401 atttcaaaat cggttgtgag aaaatgccaa aggttttaat ctatgctttt gcaaatctta
     5461 aaaaatcttt agctttggtc aataacaaac ttggcaaact tgatgatgct aagaaaaatg
     5521 ctatagttca agcttgcgat gagattatcg caggtaaatt tgatgataat tttccacttg
     5581 cgatttggca aacaggttca ggcacacaaa gcaatatgaa tatgaatgaa gttattgcaa
     5641 atcgtgccac tgaaatcatg ggcggggatt ttcgcaaaga aaagcttgta catccaaatg
     5701 atcatgttaa tatgagtcaa agttcaaatg atacttttcc aacagctatg agtatcgttg
     5761 cggttgagca agtagagaaa aagcttatcc ctgcgcttga tgagcttatt gcaacttttg
     5821 aaaaaaaagt aaaagaattt gatggtatta tcaagatagg acgcacgcat ttacaagatg
     5881 ctactccact tactctagcg caagaattta gtggatatct ttctatgctt ttacattcaa
     5941 aagagcaaat catcgcttct ttaccaactt taagagaact tgccatagga ggaaccgcag
     6001 tgggaacagg gcttaatgca catccagaat taagccaaaa agtaagtgaa gagctaactc
     6061 aacttatagg tacaaaattt atttcaagtc caaataaatt tcatgcttta acaagtcatg
     6121 atgcgattaa ttttactcat ggagctatga aaggtttggc tgcaaattta atgaaaattg
     6181 caaatgatat aagatggtta gcttcgggtc caagatgtgg tcttggtgag cttatcattc
     6241 ctgaaaatga gccaggaagt tcgattatgc caggtaaggt aaatcctacc cagtgtgaag
     6301 ctgttactat ggttgctgta caagtgatgg gaaatgatgt agctatcgga tttgcagcaa
     6361 gtcaaggaaa ttttgaactt aatgtgttta agcctgtgat tatttataat ttcttgcaaa
     6421 gtcttgattt gttggctgat tctatgcatt cattcaatat ccattgtgct gtaggcatag
     6481 aaccaaatcg tgcaaaaatc gatcataatc ttcataattc tttaatgcta gttaccgctc
     6541 taaatccaca cataggttat gaaaacgctg ctaaagtggc caaaaatgct cataaaaaag
     6601 gtatttcttt aaaagaaagc gcaatggagc ttggtttggt tagtgaagaa gatttcaata
     6661 aatttgttga tcctactaaa atgataggct caaaagccta gaacataaaa cttgcctttt
     6721 ttaaggcaag ttaaattaaa ttcttatctt ttaaaatcac atacattctt aaagttgata
     6781 caaaaaaagt taaaatcgca ggacctagta taatacccca aaaaccaaag gttgaaattc
     6841 ctgctatcat ggccaagaaa attaaaagtt cgttgatttt agtgggagtt tttacaagtt
     6901 ttttgttgat ccatttgatg attaaaggtt tgattaaagt atctgctata aaagaaatta
     6961 caattacaga ataaataaaa ataacaagag ctgagttaag attgtttgag gcaaattcat
     7021 aaagacttac aggcacataa attaaagctc ctcctatagc aggtatgaga gaacttacag
     7081 caaaaattac tcccattaaa attccatcat aaccataaaa cattgtgatt aaaccaaaaa
     7141 gtgcaccttg aaatattgct acaattacca tagagtaaag cacaacagcc ataacattac
     7201 ccacttcgct taaaacatca tcgagttctt ttttatcaat aggaatgatg gatttaagat
     7261 agataacaag ttctgttcca tatagatttg caaagaaata aaatacgcaa attaaaacca
     7321 tatctataag aaatttagct cctgattttg taaaacttga agcataactt agaatttgtt
     7381 tagaaatgct atttaaatct atagaagcta aaaattcttt gattttaggt tctaaaaaat
     7441 taaagctttc aggcaaggta aattgataat ttttgacata atcaagagtt tgtgtaacta
     7501 aattaatatc aaaatttttt aaagctttgg caagttctat catagcataa acaaaaggtg
     7561 caaagaaaag caaaaccata caagttgttg taagaatgga agctaaaaat ttatgccctt
     7621 tagtaagatt taaaaatttc gcattgatgt ttgaggtagc taccgccatt aaactagcta
     7681 tgataattac aagtaaaaaa cctttaaaaa ggtaaagtaa aagaaataaa atgactaaaa
     7741 taaagcttat aagaaagaat tttccatttt gcaaaattta ctcctcaaat aaagtttttt
     7801 catagtttag ttttaaagca ctataacttt ttgcacttgc tatacgccct tttgcagtgc
     7861 gttctatata gccattagct aataaataag gctcgattac atcttctatg gtattttcat
     7921 cttcacttaa agccgcagca atacttgcaa gtccgatagg tttttgtttg gcagcggtta
     7981 aaagttcaag atatcttaaa tccatcgcat caaaaccaag ctcattaact cctaaagaat
     8041 ttaaggcctc attagctctt ttttctgtga taatctcttc atcattaaca tcggcaaaat
     8101 ctctaactct ttttaaaagc cttagagcta ttctaggagt tgaacgactt cttttagcga
     8161 tctcaagtgc ggctttttct tcgcaagttt tattaagttt taaagctgct ttttgcaaga
     8221 ttagggcaag ttcgctatct ttgtaaaatt ctaatctaaa ttgcatacca aaacgatcac
     8281 gtaaaggatt gctaagcata cctgcacgcg ttgtagcccc tataagagta aattttggta
     8341 aatcgatttt tatggtttga gcagctggac cactacctat gataatatca aggcggtaat
     8401 cctccattgc agggtaaagc acttcttcga tagcaggact taagcgatga atttcatcga
     8461 taaaaagtat atctccttcg ctaagattgg ttaaaatagc ggctaaatct ccgctttttt
     8521 ctatcatagg agcggcggtt gttttgatat ttgcacccat ttcataggag atgatattag
     8581 ctagtgttgt ttttccaagt cctgcaggac cactaaaaag tatatgatct aaacattcat
     8641 tgcgtttttt ggctgcagct ataaagatat ttaaattttt tttaatgctt tcttgaccta
     8701 tataaccatc aaaatttgaa ggacgcaacg aagtttcgta agtttcatca aaggagtatt
     8761 tttctatttc tactattcta tccatatctt tgcttatatt ttggaaaaat taaaataaga
     8821 ttttagctaa aatttgctag aatttacatt aaactttaat gattatggtt taaaaatggg
     8881 aattttaaca aaattagaat tagattatga aattgacgat atagaaaaat ttttacaatt
     8941 ttttagaacc atgtgcgata ggtttgaacc tttaatcatc aagcttggaa gcgatagcgt
     9001 gcgttataaa gaagccataa aagagcttga aactttagca cacaataccg cttgggcagc
     9061 aagacgctta aatcttgaag aagtgactga tttttgtgta ttttgtgaag agatgatggc
     9121 gcaagcaaat cgctttaatg ggcctgctag tgatgaattt acggattgga tgcttttgat
     9181 gagtgatcag tttgaaaaat attgtcgttc atatgaaaat gatgattctg ttttagcggt
     9241 ttttaatcct ttaattgtta atgttccaaa tattatttct aaataaggga gcgacttggt
     9301 ttcgacagga gtaagtctgc ttagatggca tgtcgctttg ggcaaagcgt aaaaagccca
     9361 aataaaatta aacgcaaaca acgttaaatt cgctcctgct tacgctaaag ctgcgtaagt
     9421 tcagttgagc ctgaaattta agtcatacta tctagcttaa ttttcggtca tctttgatag
     9481 tgtagccttg cgtttgacaa gcgttgaggt gaaataaagt cttagccttg cttttgagtt
     9541 ttggaagatg agcgaagtag ggtgaagtag tcatctttgc taagcatgta gaggtctttg
     9601 tgggattatt tttggacagg ggttcgattc ccctcgcttc caccatcacg ctaattttaa
     9661 gtaaatcata agtttatttc aaatttttag aattttttat atgaagttaa gaacgattta
     9721 ttacccttaa aactttgata tattaggttt tataattttt cattaaaaat ttatagtttt
     9781 atttttaagc ttatttttag gggatataat tattccttca gtttaaattt attgaaggag
     9841 aaacttatga aaaaaaatgc ttcgagcaag atattgctaa gcttaggtgt agcaactttg
     9901 ctttattcga gtgcttttgc tgaagaaatc aatcttacac aatcttcaga tgtgggaaat
     9961 tattttgaag aaaatggtaa ggatatcaat cttaaaaatc ctaataagta caaagggcaa
    10021 gatttaagta tcaaaatggg tgtttgggat ttaccaaacg atgattatga tagcgctgat
    10081 tatcgattta acattgatat cggtaaagac aatactttaa gctttacaca taacaataaa
    10141 gaaaatcctg cttatgtaac aaatctaaac gctactgcta aagaggttaa aacaacagat
    10201 atagttttac aagcttttgc accttcggtg attaatggaa atttaactat gactagctca
    10261 ggaggtgaag ccattactga ggatgaaaaa aaggttcagg tataattctt tataatggag
    10321 cagttgaagg aaaaagtgct aatggtagtt taactataaa tggaaatttt actgccgata
    10381 aaactctttt tgctacttat ggaaattttg ttaaggtaaa tggagctgca aatcttacaa
    10441 attcaaattt tggacttatg aaacactctt atacagactt agaagcaaat aatgtagtaa
    10501 tagttcaagc taaagatttc aatgaaaaca ttttaaaagc aaataataac gcaggtgcat
    10561 tacttttaaa attcgcaagt gattatatct caaccgatgt tcaaggcaaa gatcctttgg
    10621 aagcaggaac tataatagat attagtgatg aagataaata cggcgatgga gaaaaaggct
    10681 tagtagatta taaacttagc gttcaaaact gcggtggcaa taaatgctta gtgatcaatg
    10741 gaggtgctac tgcagcggct aaagataagc tagttcaact tcaagtagat atagatacta
    10801 tcgataaatt gcttgaaaat gaatttgatt ccgatcaaga tgaagaatgg gcaaaagcca
    10861 aagaagctct tgaaaaacaa aaaactgaac ttcaaacaat gttagaagaa gctgagaaaa
    10921 acggcggtaa aatcgatgat gaaaaataca ttgatttagt aaataaaaat tcaaattgaa
    10981 atcttaactc taatgataaa gcttctatcc tagcacttcg ttctatcaca gaacaattag
    11041 gaagtatagg agcagattta gcaagtagag aaggtgtaaa actagcccta caaatcaaaa
    11101 aagacacaga caatacaggt aaatctgtat ctaatctaaa ttcagcttct agtgcagtaa
    11161 ataccactat gaatatttct aatgatgttt ctataggttc tcgtgtagca atgttaaaca
    11221 atccttttgg aacttatgct tctaaaatga atggccttaa atttgctgct ttagatagcg
    11281 atatgagacc aagctatgta aatgaatata ccaatagtgt ttgggctaat gcttttggtg
    11341 gtgctaacat tatcgatgga gatagtggtg caatgtatgg tgctaccgtg ggagtagata
    11401 aacaagctaa tgatgatgtt ttatggggtg cttattttac ttatgcaaat gctaaaatca
    11461 aagacaataa tttagaacaa aaaagcgata acttccaatt aggtatgtat tctactatca
    11521 atatagctcc acaatgggaa cttaatctta aagcttatgc tcaagtttct ccaactaaac
    11581 aagacaatgt tcaaatagat ggtgcatata actcagatta tacaagcaaa ttcttaggac
    11641 ttagtgctaa tgcaggtcgt gtgtttgact ttagtgataa tactttattt attaaacctt
    11701 ttgcgggagt aaattattat tttagttata ctccatttca tacagaaaat ggtgctattg
    11761 ctaaagatat tgattctatg aaaaacaatt ctgtaagtgt tgaagtgggt gctgaattta
    11821 gaaaatatat gaatgaaaac tcttatattt ttgtaactcc aaaaatagaa caatttgtta
    11881 tcaatagtgg tgatgattac acagataacc tagctgtaaa taatgctttc tttactagta
    11941 ttgaagctaa caacaagaaa aaaacatacg gacaaattat cgtagggggt aatgtagatt
    12001 ttacaaatca actcagtatg aatcttggct ttggtgctaa acaaatacta gcaggtaaag
    12061 tagataataa aaatgaaact tacttaagtg gtcaagtagg acttaagtat aaattttaat
    12121 cttaaaaatc atttctaaat ctttttatag tttagaaata attgtttatt tctatgggaa
    12181 atctcctagg gctttatctt aaagcccttt tttataacaa acaagtaaat aagtctttag
    12241 agtaaaaaac cctaaaaact tttagttttc tttgaaaagt ttggaagcta agtgcgttgc
    12301 acgactttga tctgtatctt ttttaagtgt tttataaatt ttacttacat attcttctaa
    12361 ggtttgttga gaatctatga ttttttcaga agaaggaatt ttttcatatt ctccattatt
    12421 tttaagctta taagctaaaa cattatcact aagttgcaag cgtaaaaatt gagctaattt
    12481 agctttgctt ctttcatcat atataggagt cataagttct aagcgacgct ctaaatttct
    12541 tggcatccaa tctgcactcg atataaaata atttggctca ctatgtttaa aataaaatac
    12601 tctagcatgt tctaagtatt ttcctatgat gcttctaacg cgtatgtttt tgctgtattc
    12661 ttcatcaggt tttaagcaac aaattccgcg tatgataaga tcgatttgca ctccttccat
    12721 acttgcttca taaagcgctt gtatgatatc actatccaca agagaattca ttttagctac
    12781 aatcacacct tcatttttct tgcttgtttc aatgcgtatc atttctaaaa ctttttcttt
    12841 gatttgattt gggctcattg aaagagtttg aaggcgacga tttttactaa agcccgataa
    12901 gatgtggaaa aagcttgtcg tatctcttgc aaattctgct ttgcttgtaa aataactcac
    12961 atcagtatag attttagcac tgcttgcatt ataatttcct gtgcttaaat gcatataaaa
    13021 tttaagttta tctccttgtt tgcgtatgac ttgagaaacc ttagcgtgga ctttaaaacc
    13081 tgtaatgcca taaataacat gagctccggc attttctaaa gctttcgccc aatgaagatt
    13141 attttcttca tcaaagcgtg cttttaattc taccatcaca gttacttgtt ttccatcact
    13201 tgcagcatca attaaagctt gaactatatt ggaatttttt tccactctat aaagtgtcat
    13261 tcttatggaa attacttcag gatctttgct tgcttctttg ataaatttat aaactggatc
    13321 aaaactttca aaaggttgta tgatgagtat atcttctttt tctacagcat caaaaataga
    13381 taaattctca tcaaaaggtg gtaaagtttt aggcgtgtaa agtgggctta aaagatgcgt
    13441 aaaggtttta tttcctgcga tttgccaaag gctagggaga ttgagtaaaa tagaatattc
    13501 ataaacatct ttatgaaaaa ttttcatgtg agtattaaga aattctacga tttgctcatc
    13561 tgcatctttt tgaatttgca atcttacaaa agctcctttt ctgcgaagtt ttaagccttg
    13621 ttctaaaatc atcataaaat catcagcttc ttcctcttct attaccatat ctgcatttct
    13681 agtcactcta aatgctgctg aagctaagag tttatagcct ggaaaaattt cttctgcgtg
    13741 ttgatggact atactttcta taggaacata aatatttgca cttacttcat aaaaacgagg
    13801 taaaactctt ggaattctaa tcattccaaa ttttacaagt tcaggatgcg ctttatcgca
    13861 aattttaacc gctagtgaaa aagataagtt gtttaaatgc ggaaaagggt gagtagcatc
    13921 aacagctatt ggaacaataa caggaaaaat attggagaaa aaatactcat cacatttttg
    13981 ttttaaattt tcatctaaat tctcataatg ttttatgaaa agattttctt tttctagttc
    14041 acttgtgatt tcattaaaat aacgctccaa aagttctttt tcttggtgta agtatttgcg
    14101 tatggctttt aattgttgta acggggtcat ttcatcgcta ctgcttgcat taactccagc
    14161 tgaaaaaagt tgttttaagc ctgcgacgcg tatcatataa aattcatcta aattagtgca
    14221 atatatagct ataaatttta atttttctaa caagggtaaa tttttagaac attggtctaa
    14281 aacacgagaa ttaaagcgaa gccaagaaag ttcgcgattg ataaacatat caggacttgt
    14341 ttgcattaat ttttcctttt ttagttgtat tttatcattt attttgaaat tattgaataa
    14401 aagttttaaa ttttttaggt taattaagag taaatatatc tttaaaatta tattaaattc
    14461 atctatgtta gaatcacaaa atttatttct gggaaattct gtgacattgt tgtttcattg
    14521 aagattttaa gaaatgataa ttttaaggag gaaaattttg aagaaaactt cgaatctttt
    14581 tactattttt cttgttttgc tttttgtttt ctttgcggtt gggttttata ctttttataa
    14641 cgctaagggc acatcttatt taagcaatgc aagtgaatct tgtaataact gccatattat
    14701 gaatgaagtt tataacgaat acatggcagg accacactct caaaaagtca aaggcgaacc
    14761 aagagcaact tgtgtggatt gtcatttgcc acataatttt gtagctaagt ggatagctaa
    14821 agcgcaaagt ggtttaggac atgcttatgc ttttactttt aaacttgatg agttgcctac
    14881 aaatttgagt gcgactgaaa aaagcagaaa aatggtgcaa gaaaactgca tacgctgtca
    14941 tgcagatttt gctcaaacag ctatcaatgc tacaacaaat ccacatgcag acaagtcatt
    15001 aaattgtgct tcttgtcata aagatgttgg acataaacac ggaatttaat aaggagaaga
    15061 tgaatgaaaa aaaatatttt acgcttaggt attgtcgttt tggttttact tatagcggga
    15121 gttttatggc taaataatga tatcaatcaa aaaaaagaag atgaagcaaa taaaaatgcc
    15181 attgcagcaa atgctgattt ttctttgctt agcgatgatg atccaaattt tgaaaaatgg
    15241 ggtaaggttt ttccagagca actaaaaatg tatttaacgg ttgaaaaaga agagcctaag
    15301 gctactgaat ttggtggtaa tttagcttat tcaaaattaa ttcgctttcc tcaattaacc
    15361 atactttggg caggatatcc ttttagtctt gatttcaatg aagaaagagg gcatttttgg
    15421 gttcaagtag atcaaatgaa aacagcaaga aacaacaaag attttcttaa tgcccatgga
    15481 cttgctgctt ttaaaggtca acctgcagct tgtatgaatt gtcatagtgg atggactcca
    15541 tggcttataa aaaatgttgc taaaggagat tttactgctt ttaactctac aaattattgg
    15601 actatgatta aaaatatccc agctgttgat ggtatagtag aaaattcacc tgaacatgca
    15661 ggcccacatg gtggtaaaag aatgggtgta acttgtgcag attgtcacaa tccaaatgat
    15721 atgagtttaa gacttactcg tccagcagct attaatgctt tagtttctag aggatatgaa
    15781 aaagatccag tacaaggcgt aaaagctaca agagaagaaa tgagaacttt agtttgctct
    15841 caatgtcatg ttgaatacta ttttaaacca acaggggaaa aagtaaaagt aatgggtgaa
    15901 actattgtag atgatagttc taaaaaatgg tggaatggaa ctcagaaaaa ttatgatgag
    15961 tatgagtttt ggagagatgg caataaagct aaagagattg aaaccgatgg tatagtttta
    16021 acttttcctt ggagtgagtg gaaaaaagga caaccattta gaattgaaat gctagatgat
    16081 tattatgata aagttcgtgg agtatttgga gctgatttta ctcataaatt aacaggagcg
    16141 caaattatta aaattcaaca tccagaaagt gaactttata gtggcggtgt gcatgctgca
    16201 aatggagtaa gttgcgtgga ttgtcatatg ccttatgtta gagaaggagc taaaaaggtt
    16261 actcaacaca atatcacttc tcctttaaga gatattaact ctgcttgtaa gtcttgtcat
    16321 aaacaaagtg aagattattt aaaagctcaa gtgcttgaca tacaaaacag cgttgcacat
    16381 gatcaaagaa ctgcagagta tgcaattgtt agtttgatta tggatactaa aaaattacgc
    16441 gatgaactag gcaatatgga aaaattccaa agcgatggaa aagctgatgc gaaaaaaatt
    16501 agcgaagagc taaaagaagt tttagaactt catcgtaaag ctcaaatgag agcggatttt
    16561 gttaatgctg aaaactcaac tggttttcat aatcctcgcg aagcttcaag aatgttattg
    16621 caagctgttg atatggcaag aatgggacaa actaaacttg tagaaattgc agcggcaaat
    16681 ggaattaaag attttaaaac ttcaaattta ggttttgaag atattcaaaa atttaatcca
    16741 ggagagcttt attataaagt agatgttaat aatcataaag ctggagagcg ttactatgca
    16801 gatgaaaaag atgttaatgg caatcctcca aaagaacttt tagagcatga taaagagctt
    16861 gctccttata attatcaagt gattgataaa aaataattct taagccctat aatcataggg
    16921 ctttttcttt tctttgtttt aaaaaatata aactttttat ttaaaattca cttttgcttc
    16981 actttgtttt gtcaaaatat cacaaatttt gataatcaaa aaggagttaa aatgatcaat
    17041 aaaaataaat tgtttagaca ggttcatatc tatcttagtt tgttcttttt gccttgtgct
    17101 ttgctttttg ctttaacggg tatagcgtat atttttggta ttaatcaaga tgtgggctta
    17161 aaagttgagc agtatcaatt gtcaaaagtt atagaaagtg gtaaagaaag agaagcttta
    17221 atagagtatt taaaaacaaa tggtttaaaa gtaccatcta atacaaatat aattaaaagt
    17281 aaagataaag gtataacaat aggtggaact cattatagtg ctaatataac tcaaaattct
    17341 actaatgaat acaatattac cttaaaaaca agatctttac ttggagatat gattatgctt
    17401 cataaagata agggtgcttg gtatttttct gtgcttagcg taggttttgg tattacttta
    17461 tttatgcttt atatttcagg gcttatgatt actttgtttg caaataaaaa agatagaagt
    17521 aaacaatttg cagttcttgg agtaggggtt gttgtaactt tgcttttggc ttatcttagc
    17581 ctttgatttt tcctagcttt ttaagctagg tattatttat ttttttgtat aatcatactt
    17641 tactttattg gacagatggg tgagtggctg aaaccacacc cctgctaagg gtgcagatct
    17701 taacgggtct cgagggttca aatccctctc tgtccgccac taaaactttc ttgaaaatcc
    17761 caagtatttt attaagtatc gaagcaagag actagccctt gcgaagttat attattttac
    17821 agcgtttttg atttctaaaa tcatagtttt taaagactct agtccatttc cacttgctaa
    17881 ataccagtat tctggatcaa gatagatgat ttttttgttt tgcgctgctt tggttttagc
    17941 gacaagtgca ttatcgagta tgccttgagc acgttctttg ttgcctaaga tgacatttct
    18001 atcaacaaca aaaatataat caggattttt ttctaatata aattcagaat tgatactttt
    18061 tccgtgtgtg cctactttta tattctcatc taccgcgtta atccctaaaa catcgtgaat
    18121 aatcccaaag cgagattgag gaccaaaggc tgaaattttg ttagaatttg taagaatgat
    18181 aagagctttt ttatcttcat caactatact tttggctttt tcaatttcat ttttaatatc
    18241 tgaaattttt tctaaagctt ctttttctaa accataaagt tttgcaacgc ttaagacatt
    18301 gttttcaaaa gagcttaaaa aatttgcatt atcaagacct acaaataaag ttggagctat
    18361 ttcttttaat ttgtcataaa atttactttg gcgtccagaa atgatgataa gatcaggttt
    18421 taaagcatta atggcttcaa aatcaacttg ttgtactcca cctacactag gtttgttttt
    18481 aaattgttgt aggtattttg gtaaattttt agcaggaacg ccaacgactt tatcatttaa
    18541 ttttaaagca tcaaaagtat ctaaaattcc aagatctaag atcactacct tagaaggatt
    18601 tttagggatt ttattttctc ctagactatc cttcactaaa aaactatcac cctcatcgct
    18661 catactaata ggcaaaactt tcaccgtagc agtgttggtt tttgttgtag aacttgcgtt
    18721 gttttcattt gagtttgaat tacaagctgt taagattaga cttaaaaaaa atgcaaaaaa
    18781 tgcaaaaact aaagattttt tcatattttc tcctttttaa aaataaatac aaattttctt
    18841 accattaatt tgacttacgg gtatatccat atcataaatt tgttttaaat tttcttgatt
    18901 gatgatttca tcttttgagc cttgttttaa aagcttccca tcttttaagg ctatgatttc
    18961 atcagaataa atcgaagcaa aattaatatc atgtaataca acagctatac ttttgttaaa
    19021 gtctttgact aaatttttca ttagttgcat gatttgtacg ctatgcttca tatcaagatt
    19081 gttcaaaggt tcatcaaaca ttataaattc agtatcctga gcgatgatca tggctataaa
    19141 agctctttgc ttttgtcccc cgcttaatgt atctaaaaat tcatttctta agttgctaag
    19201 ttccatgtat tctaaagctt cattgatttt gattttatcg tttgtattaa gtcttccttg
    19261 agaatgcgga aaacgcccaa aagcgactaa ttcttcaact tttaatctta aattgatatt
    19321 gttttgttgt ttgagaatgg aaattttttg tgctaagatt tgctctttat aattttttaa
    19381 attcattcca tcgatataaa tttctccact actaggtttt atcaaacgac ttgctagagc
    19441 taaaagagtg gattttccag cgccattggc tcctattata gaagtgattt tgcctttatg
    19501 aaaatcaagg ctaagatctg aaataatgac tttattatca taaaatttgg tgatattttt
    19561 tagtttaatc ataatttatt accctttaat acaagataga taaaatatat cccacctaag
    19621 aaattaataa ccacgcttat agtggcatta taatcaaaaa ctctagagac aaaaaacacc
    19681 cctccaagca aagccaaaat actaataagt atacaagcgc ttagcaaaat actatgcttt
    19741 gcagttttaa atagctcata agtgatattt actactaaaa gtcctaaaaa ggttatagga
    19801 cctacaagtg cggtgctaat agaagttaaa atagctatga taatcatcaa ttgttttgaa
    19861 attttttgat aatttatccc taaatttatc gctaaatctt tgcctaaatt taaaggatct
    19921 aaaaatttca tatagcgaaa aatccatata aaacttaaaa agctaataat ataagcaaga
    19981 attaaaacat caaaagcaat attatcaaaa ctagcaaaca ttcttccttg tattaccatg
    20041 aattcatcag ggtcgattag tacttcaaaa aaagagctta aagtgctaaa aagtgttcca
    20101 aaaactaaac ctaaaagcat gataagataa atacttctat cactactaaa taaaatctta
    20161 taaagtccta gtgaaaaaac caccatacaa actagagtga ttaaaaaatt gatatcgttt
    20221 ttataaacac ttaaattagc cgcaccaaaa gaaaagataa gagcactttg aagcaacata
    20281 tataaagaat ctaatcctat gatagcaggg gttagaattt tgttattgca taaagtttga
    20341 aaaatcactg ttgaaacagc gatacaaata gctactataa taatagccgc aatttgtaaa
    20401 aaacgacttt ttaaggcata ctcatcaaag ccatttaaac ccacaaatat aaaaatccct
    20461 atcatgttaa gtgttaaaaa gcttaaaatt agcatttttt tacgcataaa ctttcctttt
    20521 tagtaaaaga aagataaaga ttaaagaccc taaaacacct gtagtgatac ttaaaggcat
    20581 ttcaaaagga aagataacaa gtcttgaaat gatatcgcaa acaagtaaaa acaaagctcc
    20641 acaaagtgct atatagataa gattttttct aagattatca cctagataaa gagctactaa
    20701 atttgggata attagcccta aaaaagggat aatcccaacg cttacaatca ctaagctagt
    20761 gataatgctt acaatcatta agcctaaaaa taatatacca ttataagaaa ttccaagatt
    20821 taaagctata tcttcaccca tgccaactat ggtgatttta tgagctaaaa aataagcaag
    20881 tataaaaagt ggtaaagaaa tgtagagcaa ttcataattt ccctgcataa catttgccat
    20941 actgccttgt agccaacctt ggatattttg tatataattt aaagcatagg caaaaaaagt
    21001 ggttatagca ctaataatac ctccaaacat caagcctatc aaaggtacaa aaatcacatc
    21061 tttgagtttg atttttctta aaatttggat aaatataaaa gaacccaaaa gtgcaaatat
    21121 agaagcaatg atagcttgag tgaaaaaaga cgctccagta aaaaatatta aagaaataag
    21181 tatgccaaat ttagcacaat ccatggtccc tgctgtagtt ggggaaacga atttattttg
    21241 cgtgagttgt tgcatgataa gcccacatat actaagactc attcctgtga gtaaaattgc
    21301 tataagtcta ggaattcttg tgagagttat gatttctagt tgagtggagt taagattaag
    21361 aatatctttt acattgatac tgataactcc tataaataaa cttatcattc caaagaataa
    21421 aagtaaagct ataagcactt ttaaactcaa tatatgctta aaaaacaaat ctttccttat
    21481 agtaataata attatcaaaa atgaaattgt aatgaaattt gttttaagaa atgataaaac
    21541 tacaaaggat attttagtaa gaaatcaaaa atccagtgga aagtctttgt aagtgtttgt
    21601 tataatctat aaggctttct ccatagccat taaagtattg tacataccaa taaattccgt
    21661 tattaaaaat atcatatcct agatcaactt gtatagcgcc tttgttattg tggaatttaa
    21721 gattgtttct tagcataaga ttgataaaat aatcatcacc taaatacgct aaattcacat
    21781 caaaatttcc catataatgc aagatagcag gattatcatc atcttttttg ctttcaggaa
    21841 ttctatacca aagacgtgga acaaataaaa atttattata taaaatagca gtagatacat
    21901 aaattctatt ccatgagcga gattgtaaat tctcatctcc cttgccattg ctttcatgca
    21961 atatacctac gcgtagattg ttaaaaaatt cataatcttt aagatacaaa ggaaaatcta
    22021 taaaaaattc tggttgatag ttggtttctc taaaaggaga agaatgctca taaatttgcc
    22081 accaagaagt ttgagtatag gctatataat atttttcatc tagtcctagt aaattttcaa
    22141 aaagtctttt tttaacacta agttggaatt tcgcctcact cttattatta tttgttccta
    22201 aagaattaaa actataagta aaaggtaaaa aataattcat cttataagag ctaatgccaa
    22261 ggggattaaa gctttcattt tcaccaagat aattagccaa agctaagcga gaaaagtctt
    22321 gtttttcttc tttttttata gtgatagaat tttgcatttg tgttgcttgg cttgagttat
    22381 tttgttcttg agaaatcaaa acagatgaat tttttaaagc gagttttttg taaatttcca
    22441 tagctttttt ataatcgcct tgtttttcat actctaaagc ttgttgtaaa tcactagccc
    22501 atataaaaac gcataagctt aaaaataaag caatttttct cattttaact cgcttttaaa
    22561 tttttcatat tcttcataaa aattaagatt taaaaaagca tcttcatctt caaattctac
    22621 aaatttggtt ttaatctcag aaaataaaag tcctattttt tgttcatttt tttctaagaa
    22681 atttttacaa gtttgagcta aagagctgtg ataaaagcca cataagggat gtttatgcaa
    22741 aggggttttt gctatgatta ttttatagtt ttgttctaaa aaaggaagca tttttaaaag
    22801 ctcattttca cctactttag gactatctac acttaaaaca aaaacaaatt catttttaaa
    22861 atttgaaagt atagagtaaa gcgcaagcat aggagagtaa acttcaaatt ctaaagaatc
    22921 ttttatcaag ctaaaatggt tttcaaattt gtcttctttt gcactcacat agacattttt
    22981 aaaaatttta gaaaatttct ctacttgaaa ttgagttaaa ttttgatttt taagaatcaa
    23041 tttgctttta tcttgtccca tacgactaga tttgccacca cataaaatca cgcaatttag
    23101 ctcattaagc tgcacaaatt tcctttttta atgtaattct accacaaatt cgccaaaata
    23161 ttttataatt tcttttatga aatacacaga acttttacaa ttgcaaactt ttttttctca
    23221 gtttaaaaaa atcgatttta tcaagcgtat taatgacaat attttggaat taagctttga
    23281 tagagaaaga tttatttttg atctcactcg tgcaatgagt gcgatttata cggctaaatt
    23341 taatgcaaaa aattataatg caccttttga ttttatgctt aaaaagtatt ttagcaatgc
    23401 ttttataaag gaagttaaag tccttgaagg caatcgtatt ttatgtttta gtgtaaaagc
    23461 taataaggct tataaaagct atgagagcaa gatttatttt gaatttacgg gtaaaaatac
    23521 caatgttatt cttacagata aaaaaaattt gatcatagag gctttaaggc atattgataa
    23581 aagttatcgt gttgtaaaac ctaatgtgat tttagagcct ttaaagcctt ataaaatgga
    23641 tgaaaatttt gaggaaatca aagactttgc agattatttt tctcgcaaat ttacaagcat
    23701 ttatgagagt aaaatcaaac aaataaaaaa tttaaaactt gcacaagtag ataaaaaaat
    23761 acaaaattta caagaacttt tttctagtct agatgaagaa aattctttac tcttaaaagc
    23821 tttagaatac agaaaaaggg ctgatgtatt gtttgcaaat ttgagtgttt taaaagatta
    23881 tgaaagggaa tttaagcttg atgattttga aggcaaagag cttgaattta agcttgaatt
    23941 tagtcctaag cgaagcgcta atttatatta taaaaatgcc aaaaaattag aacaaaaagc
    24001 taaaaattta aacatacaaa ggcaaaattt aaaagaaaag ttagatttta ccttgagttt
    24061 gaaagaatta ttgcttcaag ctaagagtga gatagagctt gaaattttac tacctaaaaa
    24121 aaatagcaaa aaaaatcaag attataaaca agaagatctt gtggcaaatt tttattacaa
    24181 tgagtttaaa atttgtgtgg gtaaaaatga aaaaggcaat gaatttttac ttaaaaatgc
    24241 taaaaaagat gatttgtggc ttcatgtaag ggatattcct agcgcacata ctttgattgt
    24301 atcaaacaag caaaaaatca gcctcgatgt gatagaattt gctgcaaggc tttgtgtaag
    24361 cttttctaag ttaaagaaag gttcgtattg ggtcgattat accttaaaaa attttgttaa
    24421 ggttcagcaa aaggcgtttg taaattatac aaattttaaa agtattaata tcacaaagga
    24481 ttaaaatgcc agttagccct ttaggaaata tcaattatat aaatcagaat atggcttatc
    24541 cagctacaca agcaagcaat gagcttgcaa aagaaggttt tgcagctacg ctaaatatgg
    24601 ctgaatttaa tgaaaaagaa aaaactttaa acaagcttga aaaagtcaat gagactcatg
    24661 aaatcaaaga agagatcaaa gaaaaagccg aacaagaaga aaaaaagaaa aaacacaatc
    24721 aagaagctaa aaccagcgat gatgagaaaa atgaagaaga tgagtctaaa gatccaaatt
    24781 ttaaagacgc acaaagcatt catcgcctag atattagtat ataaggaaaa atatgtttaa
    24841 tacaactaga attatttcag ctcttgtgat gataggggct attattatta tcgcgttgat
    24901 tgatcaattt tttatcaatt ttatcgtttt tgcggtttta ttgtatttat cttttagtga
    24961 agcaaaaaaa ctttttgctt tagaaaatat ttctattatc cctttggcta tagcttttat
    25021 tttgggaagt ttatcgcata aagctttgct ttttgggatt ttagctttgt tattagtcgt
    25081 tggatatttg gtttataaaa aggcttcctt aaaaccagct cttatttata tttatcctag
    25141 tttgcctatt ttagcacttt ggcaagtgta tttagatcag ggtatgtttg cgcttttttg
    25201 gcttatcatt atcgttgcag cttgcgatag tggggcgtat tttatcggaa aacttatggg
    25261 taaaactcct ttttctccaa caagtccaaa caaaacctta gaaggtgtta taggtggctt
    25321 gatttgtgcg agtgttattg gaactatttt gggaattttt gtttatagtt tttggctttc
    25381 tttactttgt tcgttttttg tagcgatttt tgcagtgatt ggagatttgt ttgagagtta
    25441 ttttaaaaga gaagcaggtg taaaagatag tggagatctt atccctggtc atgggggcgt
    25501 gctcgataga atcgatgcag tgatcattgc tgcttttgtg atggttactt ttttatgata
    25561 ctttttggaa gcacgggcag cataggaata aacgctctta aacttgctgc tttaaaaaac
    25621 attcgtattt ctgctttagc ttgtggggat aatatcgctc ttttaaatga acaaatcgca
    25681 aggtttaaac ccaaatttgt tgccataaaa gattcaaaaa ataagcattt agttaaacac
    25741 gatagggttt ttatagggca agaaggttta gagcaaattt taacagaatg tcaagataag
    25801 cttttactca atgccattgt aggttttgca ggacttaaaa gcactttaaa ggctaaagag
    25861 cttggcaaaa gcatagcttt agctaacaaa gaaagtcttg tagtagctgg gagttttttg
    25921 aaaggggcta aatttttacc cgttgatagt gagcatgcag ctttaaaatt tttactcgaa
    25981 ggtaaaaaaa atatagcaaa actttatatc acagcaagtg gtggagcttt ttataggtat
    26041 aaaatcaaag atttaaatca agtcagtgtc aaagatgctt taaaacatcc taattggaac
    26101 atgggagcaa agatcactat agatagtgcg actatggcaa ataagctttt tgagattata
    26161 gaggcttatc atttatatga ttttaaagaa attgatgctt taatagaacc aagatcttta
    26221 gtgcatgcaa tgtgtgaatt taaaaatgga gctagcacgg cgtatttttc aaaagcagat
    26281 atgaaactag ctatttcaga tgctatattt gaaaaacaag atacgcctat tttagaggct
    26341 gttgatttta gcaaaatgcc tgctttaaaa tttcatccaa tcagcacaaa aaaatatcct
    26401 atttttaagc ttaaaaatac atttttaaaa gagccaaatt taggtgttat catcaatgct
    26461 gctaatgaag ttggtgttta taatttttta gaaaataaaa gtggattttt agacattgct
    26521 aaatgcattt ttaaagccct tgatcatttt ggagtgccta aaatttcaag catagaagaa
    26581 gtttttgagt atgattttaa aacaagagag tatttaagga gttaaaatga aatttttttt
    26641 aacaatttta ttttttataa caagcatttt tgctttagag ctagacttta gcgtaggaga
    26701 aaatggaaaa agtctagatg ataataatac agttttaatt tttggtggaa ttcaaggcga
    26761 tgagcctggt ggatttcatg cggcaagttt gcttttgagt gattataata tcactaaggg
    26821 taagattata gtggctccaa atttagcttt tgatagcatt atcaagcgtt ctcgtgggaa
    26881 taatggggat ttaaaccgta aatttgcaag cattagccca aaagatcctg attataaaac
    26941 cgttcaacgc attaaagagc ttattttact tcctgaagtt agtatggtga tcaatcttca
    27001 cgatggttgg ggtttttata aacccactta tatcgatgcg atgcaaaatc ctaagcgttg
    27061 gggaaattca agcgtgattg atacaagcga aatcaatgca agcaaatacc ctgatcttga
    27121 aaatatcgcc actcaaaccg taaatagtgt caattcttcg cttgctgatc caaagcatgc
    27181 ttatcatctt aaaaacacca aaacccaaga gcttggcgat acggaaatgc ttaaagcttt
    27241 aacttatttt gtgatttcaa atcacaaagc cgcttttgca aatgaagcga gtaaaaatct
    27301 gcctgtaaat ttaagagctt attatcatct tttggcaatt gaaaattatt taaaaactgc
    27361 aggaattgaa tttagcagag atttcgaact cactccacaa ggagttgata aagccataaa
    27421 taaagagctt gaagtaaaac tttttgatga tagaatttta ctttctttaa aaaatccaag
    27481 aaagcttatc aactatgtgc cttttccggt aaataaagag ttaaattata acacaagcaa
    27541 tgaacttacg gctgttatcg cagaaggaaa ttctttttat atccaatatg gcaatcgttt
    27601 tcaaacaaga ttatatcctg agtatttaga atttagcgat gcttttaatg aagtaacttt
    27661 tcaagttgat ggcaatgaaa ccacagttcc ttttggaacc aaggtaaaag taaaagagaa
    27721 ttttcttatt ccaaagatag ctaatgtgcg cgtaaatatc ataggctttg atcactcaaa
    27781 agatgaaagt ggtattttag ttcataaaaa aaatatgcaa acacaatact ctttagacat
    27841 ggcaggtaaa atttatagag cggaatttta tgagttaaga ggtgcaaatt tgcaacaact
    27901 tttagaggca aatatcaata gcaagttgat caaaaacgct aaaaatttgg atttaaatac
    27961 tcttaaaatg gcaagatcaa aagataaatt cttaggttct attttagtgg aatttgaatg
    28021 aaaaatctta tcctagctat agaaagttct tgtgatgata gttctatagc tatcattgat
    28081 aaaaacacct tagaatgtaa atttcataaa aaaatttccc aagaattaga tcatagtatc
    28141 tatgggggag tggtacctga acttgctgca agacttcata gcgaggcttt accaaagatg
    28201 cttaagcaat gcaaagagca ttttaaaaat ctttgtgcca tagctgtgac aaatgaacct
    28261 ggacttagtg tttctttgct cagtggaatt tctatggcaa aaaccttagc aagtgcgcta
    28321 aatttaccct taatccctat aaatcatctt aaaggtcata tttatagtct ttttttggaa
    28381 gaaaaaattt ctttagatat gggaattttg cttgttagtg gtgggcatac catggtgctt
    28441 tatcttaaag atgatgcaag cttagagctt ttagcaagta caaatgatga tagctttgga
    28501 gaaagttttg ataaagtggc taaaatgatg aatttaggtt accctggtgg ggtcatcata
    28561 gaaaatttag caaaaaatgc caaacttaaa aatatctctt ttaacacacc tttaaagcat
    28621 tctaaagaac tcgctttcag tttttcaggg cttaaaaatg cagtgcgttt ggaaatttta
    28681 aaacatgaaa atttaaatga agacacaaaa gcagaaatag cttatgcctt tgaaaataca
    28741 gcttgtgatc atatcatgga taaattagaa aaaattttta atctttataa atttaaaaat
    28801 tttggcgttg taggtggagc tagtgcaaat cttaacttgc gttcgcgttt gcaaaattta
    28861 tgtcaaaaat ataatgcaaa tttaaaacta gctcctttaa aattctgctc tgataatgct
    28921 ttgatgatag caagagctgc agttgatgct tatgaaaaaa aggaatttgt aagcatagaa
    28981 gaagatattt taagccctaa aaataaaaat ttttcaagga tatagatgag aaaagctttt
    29041 actatattag aacttgtttt tgtgattgtt atcttaggaa ttttagctgc tattgcttta
    29101 ccaaaaatga gttcaagcaa ggatgaagct gaagttagca agtctttaaa caaccttaaa
    29161 actttgatca atgatataag catttatact ttaaaaaatg atcatttaaa ctctataaaa
    29221 acgatgagta atgtaagtgg ggttgaaaat gttgatctta gcaattttaa cggcacaaaa
    29281 gaagtaaatt ttcgcgtagg cgatgataaa aaatgcttaa aacttgtttt tataaataaa
    29341 gtagatttta tactcatggg aatttcaagc aatgaagcaa gcaaaaatgc tatcatcaac
    29401 gcagccaatc aaagccatga agatttagaa aatgtacact ttacaagctc ttcaagcaat
    29461 aaagcttgtg tgattttaag taagaatgaa aattttaaaa acctagcgag caaaacttat
    29521 cttttaatag ggggaatgta atgatagtga gtaaaactta tgagattgac tcttgtgatg
    29581 atgtagaact tggtataaaa agagaatcaa agcttgaatt taagctttgg tatgatgatg
    29641 aaaaaacacc tgaagccttg gtgtttgtgg tgcaaggtat gggtgatgat atatcatcga
    29701 tccaatatgt tggtgattat atggtaaggc aatttaatac tgctgtagtt ggagtaaatt
    29761 atcattgtat tggcaatcgt cctcaaaccg gatcaagctt ttttatggat gatatagaca
    29821 agcttatttt aaaagcaagt tgtgaagctg cggatatcaa gcttccttat gatgttgata
    29881 aaattcaaga ctataaagca atgagtgaaa tttttcattt tgtaaataat caaatagttg
    29941 aaggcaagca aaaaggtaat tttacgccaa attatttttt aaatttgcat gtgagtttgc
    30001 aaccgacaaa aaacgagtat caaaattttg ggatcatgca agctcaagat cttttaaatg
    30061 tcgcacttta ccttaaaaaa cacgctcctt ttgatactat gggggggggt ataccaatta
    30121 tcatgatagg gggttctcac gggggatatt tagcacattt ggcagctaag attgcgcctt
    30181 ggttagtaga tggagtgttg gataattctg catacgctaa gtttttatgg agagttgtag
    30241 gttttggaaa ggaaatagat tttatgcagt atagtgaatt tgctactttt gatttttttc
    30301 atcatattaa aacacattgt tcgacaaaaa ctttttggac gagtaattct tcatcgcctc
    30361 gttttttttc tcccgcaaga agaaaaattc gaaatctttt agaggaagat catcttttaa
    30421 aacaatcaaa atgtttaaaa acttgcttta taagttatca ttccttatac gatgagtatg
    30481 tttctttaaa agaaaaaact atgttctatg aagagcttga gaaacttggt tttgatgtaa
    30541 ctttgcattc tattactaaa gaatctcaag ttgatggaaa atttattaaa aacttaaatc
    30601 atggcatggg aattccagta aaacttttga ttaaaaaaga acttccttta atgttagaaa
    30661 aaataaaaca aaatctaaaa aaagattata aagaaaaatg tatctcttat ccttgtgagg
    30721 atttgttgta tcaatttagc gaaaaagatg acaaaatatt gttaaagata gataaaattt
    30781 aaggaaaact ttcatgacca tactagaaaa aaacatacaa gctttattaa gcggagtaaa
    30841 tgaaccctta ggaaatagac ttttaaattt catacaaaat aaaacttgtt ctcgttttag
    30901 tataaatgaa aatttgaata tctatgataa aactcataat gtttttatgt atgaaaattt
    30961 agaagaagaa ataaattttt tctatcaaag tattttagaa aaaactccta gatatccttt
    31021 tatatgtatt tatggtatag gcaatgcttt actgattaaa aatttagcta aacactataa
    31081 acatcttttt gtatttgaaa gtgaaatcga
//
LOCUS       DARBBO010000008        29486 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.008, whole genome shotgun sequence.
ACCESSION   DARBBO010000008 DARBBO010000000
VERSION     DARBBO010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29486)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29486)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29486
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.008"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..248)
                     /locus_tag="SB854_000251"
     CDS             complement(<1..248)
                     /locus_tag="SB854_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG0956297.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIVCII
                     PGGAEDMNSYIYIDDYLTRNYKVAVININYHCIGNRPH"
     gene            complement(310..1050)
                     /locus_tag="SB854_000252"
     CDS             complement(310..1050)
                     /locus_tag="SB854_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEG0956298.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            complement(1047..2135)
                     /gene="pstA"
                     /locus_tag="SB854_000253"
     CDS             complement(1047..2135)
                     /gene="pstA"
                     /locus_tag="SB854_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEG0956299.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPAYDLLSRAEQRKIRTGQITEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLMQKGEIELKFNSNFFLNGDSKSPENSGILPSVVGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVMLNLSAILLRKYFQGKLK"
     gene            complement(2132..3046)
                     /gene="pstC"
                     /locus_tag="SB854_000254"
     CDS             complement(2132..3046)
                     /gene="pstC"
                     /locus_tag="SB854_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEG0956300.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIETVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GFSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            complement(3056..4051)
                     /locus_tag="SB854_000255"
     CDS             complement(3056..4051)
                     /locus_tag="SB854_000255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG0956301.1"
                     /translation="MKKILSLSVASLALCGALNAADLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            4242..4745
                     /gene="ctf"
                     /locus_tag="SB854_000256"
     CDS             4242..4745
                     /gene="ctf"
                     /locus_tag="SB854_000256"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HEG0956302.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            4788..6164
                     /locus_tag="SB854_000257"
     CDS             4788..6164
                     /locus_tag="SB854_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HEG0956303.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNDYKIQNILILIFSYIIYILI
                     NPYFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFKYFPSIKGSVDEI
                     LNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLATFLSFFPTLLSG
                     PIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYAKSILDFPQSYNF
                     IQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPSNFNMPYLAKNLKDFWARWHI
                     SLSTFIRDYIYIPLGGNRKGMPRTIVNILIAFILSGMWHGNTLAFIIWGLLHGIGIVF
                     IHLLALSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYFKACYYNFFQIPS
                     YNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFILLLVFAFMPDGI
                     PDFIYSSF"
     gene            6165..7175
                     /locus_tag="SB854_000258"
     CDS             6165..7175
                     /locus_tag="SB854_000258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HEG0956304.1"
                     /translation="MSVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQENKSIDENLSKIDKVLNTLENDENTS
                     HKETNPTLIRDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSPS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            7162..8340
                     /locus_tag="SB854_000259"
     CDS             7162..8340
                     /locus_tag="SB854_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEG0956305.1"
                     /translation="MLVNKFKIILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVLKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKIKGAKINLDTTLDKKKFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIKQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(8343..9713)
                     /locus_tag="SB854_000260"
     CDS             complement(8343..9713)
                     /locus_tag="SB854_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HEG0956306.1"
                     /translation="MKIILSIFLAFFLSACGVKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALARADLIDYDLYPTLSGNLGFGADKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMKELYNYKYKLGKIEELDLLNIEQSLLRAKQNLLSN
                     DQNRNLLIKNLQDLLARQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQTLQSAMNEFALNYKDYQSDTLLLQNLQNINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDKN
                     LEFPKY"
     gene            complement(9715..11640)
                     /locus_tag="SB854_000261"
     CDS             complement(9715..11640)
                     /locus_tag="SB854_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0956307.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKNLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALINGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNEQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLILKTMPKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGKGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            complement(11640..12812)
                     /locus_tag="SB854_000262"
     CDS             complement(11640..12812)
                     /locus_tag="SB854_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HEG0956308.1"
                     /translation="MKKKIVLIILIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIANKQYQREQKLYAAKASSLENLETQKNNYYTLKANIAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVANKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNENEELIVSSSADGLATKMKLRF"
     gene            complement(12891..14081)
                     /locus_tag="SB854_000263"
     CDS             complement(12891..14081)
                     /locus_tag="SB854_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG0956309.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTAHLVCKIL
                     DEFGIKYQKNIAKTGILAIIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGPLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMTT
                     QFVNNIQSVISRRLAPYEAGVITVGQICAGTTYNVIPTNAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAVLIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            complement(14090..14970)
                     /gene="ppk2"
                     /locus_tag="SB854_000264"
                     /pseudo
     CDS             complement(14090..14970)
                     /gene="ppk2"
                     /locus_tag="SB854_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
     gene            15065..16768
                     /locus_tag="SB854_000265"
     CDS             15065..16768
                     /locus_tag="SB854_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide reductase DsbD"
                     /protein_id="HEG0956310.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLERFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKAQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVLGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGVFFSVFMGIFEKSFTIISKIKKSILILILAYSLSIFLGGLFGAKNFLNPLNFNTI
                     SASKHALSYDYINNFEQLKQEIQTNTKPIMLDFTASWCENCKLLDELTFSDERIIQKM
                     QNYKLIKVDVSENNNEQIKTMKEFNVFGPPVLIFFENGKEKLKITGFISADDLLKKIE
                     P"
     gene            16765..17433
                     /locus_tag="SB854_000266"
     CDS             16765..17433
                     /locus_tag="SB854_000266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEG0956311.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGVLDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDVHQIS
                     NAILQVSEPRKPCVKISRIHNNSNFTHEIFKTGLSGWYYKVLQVGQIRKHENIKILEK
                     NSTSLSVFELNQLFYSPHQILKQNPNLLNKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            17484..18827
                     /locus_tag="SB854_000267"
     CDS             17484..18827
                     /locus_tag="SB854_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG0956312.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMAKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(18819..19694)
                     /locus_tag="SB854_000268"
     CDS             complement(18819..19694)
                     /locus_tag="SB854_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HEG0956313.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDVFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKSV"
     gene            complement(19681..20634)
                     /locus_tag="SB854_000269"
     CDS             complement(19681..20634)
                     /locus_tag="SB854_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HEG0956314.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGLIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            complement(20631..22073)
                     /locus_tag="SB854_000270"
     CDS             complement(20631..22073)
                     /locus_tag="SB854_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG0956315.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNVEEKA
                     IRLSSEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKIERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKENETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            complement(22168..23232)
                     /gene="fbaA"
                     /locus_tag="SB854_000271"
     CDS             complement(22168..23232)
                     /gene="fbaA"
                     /locus_tag="SB854_000271"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HEG0956316.1"
                     /translation="MGVLDIVKAGVISGDELNKVYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            complement(23232..24053)
                     /gene="peb4"
                     /locus_tag="SB854_000272"
     CDS             complement(23232..24053)
                     /gene="peb4"
                     /locus_tag="SB854_000272"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HEG0956317.1"
                     /translation="MKKFSLVAATLIAGVVLNVNAATVATVNGKSISDTEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQNLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            24134..24760
                     /gene="nth"
                     /locus_tag="SB854_000273"
     CDS             24134..24760
                     /gene="nth"
                     /locus_tag="SB854_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEG0956318.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFDGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTRTFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            24757..25407
                     /locus_tag="SB854_000274"
     CDS             24757..25407
                     /locus_tag="SB854_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEG0956319.1"
                     /translation="MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFEDDTNIPKKYRTTWSDYKNSGYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
                     LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNDENIKQYQINCDKF"
     gene            25418..26050
                     /locus_tag="SB854_000275"
     CDS             25418..26050
                     /locus_tag="SB854_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEG0956320.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGVIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKYQWSLPIFSYNEEK"
     gene            26108..26542
                     /locus_tag="SB854_000276"
     CDS             26108..26542
                     /locus_tag="SB854_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG0956321.1"
                     /translation="MRRLSILLAILIVINITACDSKTENYYKNLPSEAKEKVKECKES
                     GTLSEDCINALKVGVKPTNEEGKYSPNTPKKSDNQILEALKQNDLKKEKTTKDINQSS
                     ENNESIIIPPIAETPSEIYPSKTTENNQSSIFSDGVNMTQEK"
     gene            26539..26760
                     /locus_tag="SB854_000277"
     CDS             26539..26760
                     /locus_tag="SB854_000277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HEG0956322.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKIGFPKDEWEDENISNP"
     gene            complement(26750..27460)
                     /gene="cmoA"
                     /locus_tag="SB854_000278"
     CDS             complement(26750..27460)
                     /gene="cmoA"
                     /locus_tag="SB854_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HEG0956323.1"
                     /translation="MMKDELFKQNPKKQFEFDKSVASVFDDMINRSVPFYGENLELCG
                     NLLAKILPTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFTCDVFVANYTMQFIRPPKRQELLDKIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(27447..28301)
                     /locus_tag="SB854_000279"
     CDS             complement(27447..28301)
                     /locus_tag="SB854_000279"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEG0956324.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKCLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFESIKSLDGRDFLSFLKKEFVNLKFIVVGYDF
                     SFGKNRAYNAKDIESLSGIKTIIVDEFSIDGIGVHASLIKDFLSKANLQKAKEFLGRD
                     YSIKGKMIKGQGLGSKELFATINLDCEGYFLPQNGVYVTLLKSQRKTYKSVSFLGVRS
                     SDENFAIESHILEELGENFTQGEFFELEFISFLRENQKFQDLKKLKNQIAKDIEQAIE
                     LLRKNDER"
     gene            complement(28267..29028)
                     /locus_tag="SB854_000280"
     CDS             complement(28267..29028)
                     /locus_tag="SB854_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEG0956325.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEILLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLANELKLDLLSEIYVSRAALKLKKFLEENDIEIKHKNCLDIGS
                     STGGFVQILLENQALKITALDVGSNQLHPSLRVNEKIILHENTDLRAFKSEEKFELVT
                     CDVSFISLINLLYYIDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDF
                     EKACAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            complement(29025..>29486)
                     /locus_tag="SB854_000281"
     CDS             complement(29025..>29486)
                     /locus_tag="SB854_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956326.1"
                     /translation="FLSEFLHFVSNLKFFIFSYFGYLGFRALNFIFDFFNFFMFCSLL
                     AFVFNFVLKIKIKIIVLFLCFIMVLGNYFLKEQRNNALKSEQEQILLWMNNFNFLKDN
                     NLSLIQKEKDLFEKDLKDLREIFKKNAFEIGIWWFSKEKEDLEKRINESLK"
BASE COUNT        10085 a         5032 c         3794 g        10575 t
ORIGIN      
        1 aaatgaggtc tatttcctat acaatgatag ttaatattaa taacagcaac tttataattt
       61 ctagtcaaat aatcatcaat ataaatataa ctattcatat cttcagcacc acctggaata
      121 atacaaacaa tagcttctat ttctttacta tcatcataag tcaatctaaa ttctaattta
      181 cttccccttt tgatatttaa ttctacatca tcacaagaat ctatagaata aatttggttt
      241 ataatcatat taaacctttt tttggaaatt tttaattaat tatatcatca aatttccaaa
      301 aaataaatct tatccaaaag caccacttaa ataagctttg gttttttctt gctttggatt
      361 ttcaaaaaat tccttgcttt ctccaaattc tataagctca cctaggtgaa aaaatgctgt
      421 ataatcagct acgcgtttgc cttgttgcat attatgcgta accatgatca tagaaagatt
      481 atggcttaat tctttcaaaa gctcttcaat cacacctgaa cttataggat caagtgcaga
      541 agttggctca tctaaaagca aaagtttagg tttgatcgct aaagctcttg cgatacaaag
      601 acgttgttgt tgtccgcctg aaagagctag ggcattttgc tttaatttat ctttaacctc
      661 ttcaaaaagc cccacttttt gcaagcaatc caccaccaaa gcttcttctt catctttgtt
      721 tttaatcata ccatgaagtt ttggtgcata agagatgttt tcataaatgc tttttacaaa
      781 aacattaggt tgttgaaaaa ccatgcctac atttttacgc aaggctacta catcttgatt
      841 tttaacatct tttccttcaa tttccactaa accatcgatt tttgcaattt tatcattcat
      901 tctattaaaa cagcgcaaaa aagtggattt accacatcct gaagcaccga tgagtgcagt
      961 aattttgttt tgctctattt gcatattgat atcaaataaa gcttgttttt ttccataaaa
     1021 taaatttaaa tttgttgttt ttgctatcac tttaattttc cttgaaaata ttttcttaat
     1081 aatattgcac taagatttaa cataactaaa agtcctaaaa gcacaataat acccgctgct
     1141 gttctttcta aaaatgcacg ctctggcata gccgaccatg agtaaatttg agcaggtaaa
     1201 acgctagttg gatcaaaaat cgaactagct acatcaggga taaatgctat cataccgata
     1261 atcatcaaag gtgcagtctc gcctatagcc cctgctaaag tcaaaataga acctgttaaa
     1321 atcataggca tagctaaagg tagcataatg ccttttacca tttgaacctt agtcatacct
     1381 aaggcataag cggcattttt catattgata tccacacttt ttaaagctgc cttagttgaa
     1441 acaatgataa taggcaaact catgatcgcc aaagtaagcc cacccactaa agcacttgag
     1501 cgaggcattc caaaaagatt gataaacact ccaagtccta aaagtccaaa caagatactt
     1561 ggaatacttg caaggttgtt aatacacact tctataaaat gtgtaaggat attttgtggc
     1621 gcaaattctt ctaagtaaat tgccgctgca acgcctatag gaacactcac aaccatacaa
     1681 acaagcataa caagcaaagt ccctacaact gaaggtaaaa ttcctgaatt ttcaggagat
     1741 tttgagtccc catttaaaaa gaaattgcta ttaaatttaa gctctatctc gcctttttgc
     1801 ataagatcat cgactaaagt tctttgtttt tcactaaggc gattatattt ttgcttcata
     1861 tattgatcta cttctgaatt tgccaaaagc caagattttt cagtgatttg ccctgttctt
     1921 atctttcttt gctcagcacg agataaaaga tcataagcag gagaatttct attagcctct
     1981 acaaaaatat aggtttgctt aaaagcagga aatccaagat aagccacact tcctaaaaag
     2041 atacaaagaa aaattaaatt aatataaagc cccattttac aaagtctttt aaaagacttt
     2101 gaagcttttt gtcttttttt aaaaagtttt ttcataaatt tttccttttg tgaaagcgat
     2161 tgataagata aacgctaaac atattgatga ttaaagtgat gacaaaaagc accaaaccta
     2221 aagaaaaagc acttaaagcc aaagaactat caaaagcttg atctccactt aaagcttcta
     2281 cgatttttac cgttaccgtt gtcatatctt ctaaaaaatt taaagttaaa tttggacgca
     2341 aagaagctgc catcaccact atcatagttt cgcctaaggc tcttgaaaat cctaaaagac
     2401 aagctgcaac tataccagga atagcctcag gtaaaatcac ggcaaaaacc acttcttttt
     2461 ttgtcatacc taaagcataa gcgccattaa tccttttttc gcttactgtt tcaatgcaat
     2521 cttgagataa agaagccact ataggtacta tcatgatccc catgataaaa cctgcgccta
     2581 aagcactttg aaagcttgct tgtatgccaa ataaagaaaa aaaccacact ataaaaggcg
     2641 ctacaactat agccgcaaaa aatccaaaaa caacagtagg aatccctgca atgatttcta
     2701 aaataggttt taagtaattt ttagattttt tgccagcaaa aacacctaaa tatatagcac
     2761 acataacccc taaaggtaaa gccgttagca tagcaatcaa tgaaatataa aaagttcccc
     2821 aaaaaagcga tagcgcccca aaaacacctt gtttactcgt gccatctgca ttcataaaag
     2881 ctgcatcagc tgcccactga cttgagaata aaaaggtaac aacgctttct ttttgaaaga
     2941 attttaaagc ttcaattaaa attgtaagca tgatagcaaa acttactatc acacttacaa
     3001 aagcacataa aaaaagtgca aatttgatta ttttttcttt taacaaagtt tttccttaaa
     3061 aaacttttcc agcttttaca agctcatcat ttaaaatttt tctatcttct acgtgttttt
     3121 gagaagcttt taatttatca tcactcaaag gaacaagtcc tattttttca agctctccac
     3181 cactttttgc caaatcatca ctcatataaa tttttgcaaa atcaaaggct tcttttggat
     3241 ttttcttagc attgatataa ataaacaaac ttcttgcaag ttcgtatttt tcatctgcga
     3301 tgctttcttc gcttggcgta acaccatcga tattagcagc attgattttg tctgaattgc
     3361 tcactaaaaa gctataacca aaaattccaa aagcatcctt atcaatagta agtttggaaa
     3421 cgattagatt atcattttca ccacttggga tataagcacc atcttggcgt atggttttat
     3481 actcgccttt atactcagga atttttttag acacatcact cattacaagc tcttctatag
     3541 tatctcttgt tcctgaactt gatggtggac cataaacact aattttacga tttggtaaat
     3601 ttttattgat ttgattccag tttgtataag gatttggtat aagttttcca ttttgtggaa
     3661 tttcttttgc taatgctaag aaaagttctt tttttgtgat atttaatgga gcattggttt
     3721 tattttgagc taaaactata ccatcataac ctatcatcat ccctactata tcagttaccc
     3781 ctgctttttt gcaagtttca aattcgctta atttcatagg tcttgaagca ttagaaatat
     3841 cagtagttcc ttcacaaaat accttaaatc caccccctgt tcccaagctc tctactatag
     3901 gggtttttgt atttttaatc gaagcatatt cttcagctac aaaagaagta aaaggataca
     3961 cagtcgatga acctgcgatt tttaaatctg ctgcatttaa agcaccacaa agtgcaagac
     4021 ttgccacact taaagataga atttttttca ttttttctcc ttaactttaa aaaagcaatg
     4081 gaagtttaaa aaaacttgga aacattttgg aaacattttg gaaacatttt ttattttgta
     4141 tttttcttaa atataatttt taactatcaa aaaatttagc ttgtttttaa aaaaataata
     4201 tatcattata aaacatttta aattttaata aggagataag aatgctttct aaagaagttg
     4261 taaaattact caatgaacaa ataaacaaag aaatgtatgc ggcaaactta tatcttagta
     4321 tgagttcttg gtgctatgaa aacagtcttg atggagctgg agccttcttg tttgcacatg
     4381 caagcgaaga aagcgatcat gctaaaaagc ttatcactta tcttaatgaa acagattctc
     4441 atgtagagct tcaagaagta aaacagcctg aacaaaattt caaatcttta cttgatgttt
     4501 ttgaaaaaac ctatgaacat gagcaattta tcacaaaatc aatcaatact ttagttgaac
     4561 acatgctaac acataaagac tattctactt ttaatttctt acagtggtat gtaagcgaac
     4621 aacacgaaga agaagcactt ttccgcggta tagttgacaa gattaagtta atcggagaac
     4681 acggaaatgg actttattta gctgatcaat acatcaaaaa tattgcatta agcagaaaaa
     4741 aataatcttt gccctactat gggcaaatct cgctttggat tgaaggtatg acttattttt
     4801 ctctagaatt tagtatttta atgatagctt tttttgctat ttattggact tttaaaaatg
     4861 attacaaaat acaaaatatt ttaattttaa ttttctctta tattatttat attttaatca
     4921 atccttattt cgccttagtt ttatttatat ataccttttt tatacactat tttgccttgc
     4981 taatttttgt gcgtcgcaag cgttatattt tcgctacttg catggctttt attattttaa
     5041 atttatgttt ttttaaatac tttcctagca tcaaaggaag tgttgatgag atattaaatt
     5101 ttttcggttt agaattttta aatattgatt tagtattacc aataggaatt agtttttata
     5161 cctttacttc tatcacctat cttgtagaag tttatcaaaa acgccgttta gaaagttttt
     5221 taaatttagc aaccttctta tcattttttc caacactact ttcagggcct attatgcgaa
     5281 gttctttttt ctttgagcag gcctatcaaa aacgcgaatt taaacatgca aatttaatca
     5341 tcatcttgct tgtttttggt atagttaaaa aagttttaat agccaattac cttggaattt
     5401 atgctaaaag tattttagac tttccacaat cttataattt catacaactt ttaagcgcaa
     5461 tttacgccta tgcgattcaa atatactgcg attttagcgg atatgttgat ttagtttgtg
     5521 cttttgcttt aatgttaggt tttacccttc catctaactt taacatgcct tatcttgcaa
     5581 aaaacctaaa agatttttgg gctagatggc atatcagtct ttcaaccttt ataagagatt
     5641 atatctatat acctttaggg ggcaatagaa aaggaatgcc acgcactata gttaacatac
     5701 tcatcgcttt tatactttca ggtatgtggc atggcaatac acttgctttt attatttggg
     5761 gtttattgca tggtattggc atagttttta tacatttgct agctttaagc aaatttagtt
     5821 tacaaaaaat tccagcttta ggaagatttt taacctttca atttgtatgt tttacttgga
     5881 ttttctttta ctatagcaaa aatctagaag atgcaataga atattttaaa gcttgttatt
     5941 ataatttctt ccaaattcca tcttataacg atatctatat gttggttgct tttggggttc
     6001 tttttatgat ctatccttta tttattaatt ttaaagaata ttgcattaag attttaaatc
     6061 ttactccatt tttactaaaa ccttttatca tagcttttat tttacttttg gtttttgctt
     6121 ttatgccaga tggaattcct gattttattt attcgagttt ttagatgagt gtggttagat
     6181 ttttctttat tttgattata gtgcttggct tggttgttgt agttatgaat cagagcatta
     6241 gctcttatat agaacaaaaa tatcactttg cattctatcc tcataatgat cttttaaaag
     6301 aagccaatgg cttcaaaatt aaattagaac aaattcgtgc aattttaagc aacgaaccct
     6361 tgcctcaaac taatgaagaa actacaaatc aagaaaataa atcaatagat gaaaacttaa
     6421 gtaaaataga taaagttcta aacactttag aaaatgatga aaacacttct cataaagaaa
     6481 caaatccaac cttaatccga gatgcaaata ttagttttat cgacaatacc aaattagaac
     6541 tacaaaatgg agatgagttt ttatttatcg gagattcttt aatgcaaggt gttgcaatag
     6601 ccttaaatag agatttaaga aatttaaatc ttaaggtaac cgatcttagc aaacaaaata
     6661 caggcctttc ttataaatcc tattttgact ggtcaaaagc caccaatgaa gcttttatta
     6721 aaaactcaaa tattaaatat cttgttgttc ttcttggcgc taatgatcct tgggatatta
     6781 aaaaaggagg aaattaccat cgttttggct ccccttcttg gatagatatt tacacaagtc
     6841 gtgtagatga aatcattaaa atcgctaaaa aacataaagc caaagttttt tggtttgaaa
     6901 tccctcctgt aaaaaaagaa gatttgaaca aaaaaataca agtgctcaat aaaatttaca
     6961 gcgatgaaat tcttaaaaat aaagaaattt ttatcaacac taagctattt tttagtgtca
     7021 atgatgaata ctcagcttat ataaaagatg aaaacaatag aagtataaaa gtaagaacag
     7081 atgatggggt tcattttact ccaagtggcg caagagaaat gtctaaactt ttattggaac
     7141 acataaaact taaggaagaa aatgctagta aataaattta aaattatctt attgtttttt
     7201 attattttta ctagctctta tgcacaaaat ttaaatacaa atgacacaat agattccata
     7261 ctcaatcaaa acaaaaatca ctctgcttta acaagttatg tattaaaaaa agatcttaaa
     7321 aatctagaaa aaaaattaga aaaaaatcaa aacataggaa ttagaattta tggagattct
     7381 catatggcgg ctgatttctt tccgcgtgtc ataagaggat atttaatccg ctctaactct
     7441 ataggttttg cctatccttt acagcccaaa tatcaacaaa atcttaatct tgtttattct
     7501 tataaaaact ttgaaatttt aaactcaaga aatcctgcta atgctggaca taattttcca
     7561 ttaggtggga taatagccaa agcaaaaatc aaaggcgcaa aaatcaacct tgatacaacc
     7621 ttagataaaa aaaaattcaa gataggattt ttatttaaag ccaaacaaaa taccaatgct
     7681 tttagcatca aagatgcaaa aaaccaaagc tatgagttaa gaactacaca aattaacaaa
     7741 tggtcttata aagaactaga acttgatctt cctttgcaaa tttcagcctt acaaaaagat
     7801 gctgagctag gaggatattt catcacaaat aaagataata atgttttctt agataccatt
     7861 gcaatcaatg gtgccaaaag tgatttatgg ctctcttgga atcaaacagt tgtaaaaaaa
     7921 gaactaggac ttttacacaa tgatttaatt attcttgcct atggttctaa tgatgcactc
     7981 tttaaagggt ttgaaaaaca aaaattcaaa aataatttaa aaaaatggat tagtatttta
     8041 aaaacttaca ataaaaacgc tgttatcatg ctaatctctc caccaactgt agttcaaaaa
     8101 caaggtaaaa actacaagct tgctcctgat ttttttacca tacgcaaagc attatatgaa
     8161 gttgctaaag aagaaaaaac tcttattttt gatatgcatc agtttatgca agatagtggg
     8221 ggaaaaaaca aatggataaa acaaaagctt tcgctcaatg atgtacatct tactataaaa
     8281 ggctatgagc taatggctaa aaagttactc gaggatttaa aaaatatcat cgattattaa
     8341 atttaatact taggaaattc taagttttta tcattaaaac ttaaagctgt gatttgatag
     8401 taagaattaa tggtttttaa aagattaaat ctagctctta aaaattcttg ctgggtagaa
     8461 tttaaagtat tgtttgcatc caaataatct tttaattcac tttttcctaa aatatatttt
     8521 tcataatacg ccttagtgat aagctcttgt ttaatgttaa tattttgcaa attttgtaaa
     8581 agcaaggtgt cgctttgata atctttataa tttaacgcaa attcattcat cgcgctttgc
     8641 aaagtttgct cataagaaat taaaagttgc tcataggtaa attgtgaaat tttgatattt
     8701 tgctttactc taccataatc taagaaaggt aaagaaatct taacattgcc acttaaaatt
     8761 tcaaatttaa aactatcatc gattttttta tcacttccgc ttaatgctcc acctaaagaa
     8821 atactaggca aaatagattt ttgcatggaa gaataatcct taaaagctga ttttaagcta
     8881 ttgagtttag atctcacatc tgcacggtac gctaaagctt ttaaaggtat attaaaatca
     8941 ggacttaagg ttttaaaatc atttaaagat aaagttttaa aatactctat gtaagcaaaa
     9001 ccttcttgcc ttgccaataa atcttgtaaa ttttttatga gtaaattacg attttgatca
     9061 ttgcttaata aattttgttt agctcttaat aagctttgtt ctatgtttaa aagatctaat
     9121 tcttctattt ttccaagctt gtatttatag ttataaagct ctttcatttg ttctaaattt
     9181 gaaagataag ctcgaagtaa tttatctaca tcgttaaaat aagccagctc aaacacatca
     9241 tttaaagctg tattgatcat acttattttt aaattttcaa gatcataagc acttgctttt
     9301 gcactaaatt cactcgcact tgcactatct cttaatttgc cataaatatc aagctcatag
     9361 cttaaattta aagaattatt gaaattttta ctttgtttgc ctgaatttaa atctttatcc
     9421 gcaccaaaac ccaaatttcc acttaaagtc ggatataaat cataatcaat caaatcagct
     9481 ctagccaaag ccgaaagcaa agtttttcta gcaatattaa tatcactatt attcaataaa
     9541 acaaaattta gaaattcatt taattttgca ttatcataag atctatacca atcataagta
     9601 agatttaaat ctttcatttg ttcttgagtt aaatcaactt ctttaggcaa gctaagtttt
     9661 acaccacaag cgctcaagaa aaatgctaaa aaaatgctaa gtattatttt cattttattc
     9721 ctttgataat gcactaatag gatttaaatt tgctgcattt cttgcaggga aaaaaccaaa
     9781 aaccacaccg ataaacatag aacttaaaag tcccaaaagc acagaatagg catttaaaat
     9841 cataggaaaa tccgtactta aagtattaaa agcaaaaata acaaaaatcg ataaaatcac
     9901 acctaaaatc gcccctatag tacaaatcat aaccgcttcg attaaaaact gcatcataat
     9961 atcttctctt ctagccccta tagccatgcg tatgcctatt tctcttgttc tttcacttac
    10021 agaaacaagc atgatattca tcactcctat acccccaaca atcaaagcaa tcacagccac
    10081 acaagcggta agtatggttg tagtgcgttt atttgctgta atagcttgct taaaagtgtc
    10141 agaattaaaa gtaaaaaaat ccttttgtcc gcgtttaatt tctaaaattc ttataatagc
    10201 attttcagcc aaagttgaac tcacatcatc tttaacctta actatgattt cacgcaaatt
    10261 tctatctcct gtaagcttat tcatcagtgt tgtatagggt atataaagac gtactacatt
    10321 atcttctata ggcttgtctg tatctttttg caaaactcct ataatcttaa aaggttgaga
    10381 attaaaaagc accacacgac ctaaaatatt ttcacttttt tcatcaggaa aaagattttt
    10441 tttagcatta aaatccaata cagcaacatt ggtactattt tttacatcat cattatttaa
    10501 aattcttccc gcatctatcc ttaaaccttc tatagcaaaa ttatttaccc ctactccttc
    10561 agctcttgcg cttaaagaaa tattggtata agttgccact cctgaagtat ttgaatgagc
    10621 atcaactgct tctaaatatt ctagggatct tagcgtttct aaatcactaa aattaagcct
    10681 tgttttaccc gaacgcaaat ccccaaatcc ttttccaggg cgaatttcaa tagtatttgt
    10741 cccaagtctt gcaatagact caagcacttt agcttgagag cctaatccta aagctacaac
    10801 acaaactaca gaagcaatac ctatgatgat tccaagcata gttaaaatag aacgaagttt
    10861 gtgtgcaagt atggaagaat aagctatctt aaaacattca aaggcttgat ttttaagcaa
    10921 agtaagtgtt tttttctctt tgggcattgt ttttaaaata agtttttctt gagctttttc
    10981 ctttttagta tcgcttaaaa tttctccatc tttaatctct ataacccttt tagcttgtgc
    11041 tgcaattttt ggatcgtgag ttactaagac tatagtatga ccttgctcgt taagtttttg
    11101 taaaatttca agcaccataa taccgctttt actatccaaa gctcccgttg gctcatcagc
    11161 taaaataagc tctccgccat tgattaaagc tcttgctata gaaacgcgtt gttgctgccc
    11221 tccgcttaat tcgtttggct tagaatctaa cttgtgagct aattctaaat catttaagag
    11281 ttttttagca ttttgacttc tttcttgtaa attttttccc gcataaactg caggtaaaga
    11341 aacattttct ttagcactaa gcaagcttaa aagattatat ctttgaaata taaagcctat
    11401 tttttcacgc cttaatcttg ctttttcatc gttattaagt ttagtgactt catactcatc
    11461 aaaaacataa gttccgctac ttggcgtatc taatgttcct atgatattta aaagtgaagt
    11521 tttaccactt ccactttgtc ctataatagc aacaaattca cctttttcta tacttaaact
    11581 tacatttttt aaaatggcat tttcacctat attcttgcaa atatttttaa gaaaaatcat
    11641 taaaatctca acttcatttt agtggctaag ccatcagcac ttgagcttac tatcaattct
    11701 tcattttcat ttacgccttc taaaatttga gtattgatag aatctttaat gccaagtttg
    11761 acatattttt taacagcttt ttgattttct aaaatttcaa cataataacc ttttggatcg
    11821 cttttaattg cataagttgg cactgctaaa acagcctttg cactcgctac gacaatttca
    11881 ttttgtatac tcataccaat acgcaaaaaa tcatctttat tggctacata aaattttgcg
    11941 taataataaa tagcatttga tgagcttgag cttgaagaac tcgaacttga tgagcttgag
    12001 cttgtactag aatcactcac ttcagtatca gctggatcta tacttgcaat cttagcatga
    12061 taagtttttt gaggatcatt aagcaaagaa aaatcaagct ctgttcctac ttttatctta
    12121 ctcacatcag cctctgctat ttccattctt acttccattt cgtctaaatt agctatacgg
    12181 actatagtag gagtgttttg attagcatta actgtttgtc cttcatctac agctacatta
    12241 atcacaacac catccatagg agcagtaatg gttgtataac ctaaatcttt ttgtgcattt
    12301 ttaagagtga tttcaagctg aactacttga gcattaagct ctgcaatatt agcttttaaa
    12361 gtataataat tatttttttg agtttctaaa ttttcaagag aacttgcttt agctgcataa
    12421 agtttttgct ctctttgata ttgcttattc gcaatctcaa gggcaacttt tttactctct
    12481 aaattagcct tagcactttc aagctgagct tttgtaatat ctaaatcgtt ttgttgttta
    12541 tctttatcaa tttgagcgat caaatcacct tgctttacat gagttcccac atcaacataa
    12601 agttttataa tttgtccact aacttgagca cccacatcga cttgatcttt ggcatatacc
    12661 tttcctactg cctctatggt ttgagatata tctttttttt gtattttttg agttaaatag
    12721 ctgatttttt catcattatt aaaaaaaata aaataagccc caacacttcc aagtattgca
    12781 attaaaatga ttaaaacaat cttctttttc ataataacaa atcctaaaga aaaatcaaga
    12841 ttaaatttta ctcatttttt gtgaattttt tgtgaatttt taattctatt ttataaattt
    12901 aaaaattcta aagccatcat cacatcaccc tgcattaaaa cttttaaatt ttcatcatcc
    12961 caacaaaaag tagaactatg atgcaaagct ggatgattta aatcctttga aattccaaca
    13021 aatacataag cccccattct ttctcgtgtt aaaaaagcaa aatcttcagc ccccatgtca
    13081 ggtttagaag aaacaatgat attttcttct cctaagacct ttgcaaaagc ttttcttgct
    13141 attaaaacag ctttttcatc attaatcaat ggaggaaatt ctttagtata tttaagctta
    13201 taatctccgc cattggattt tgctgtagca gcagccactt cttctaaaga actttttaaa
    13261 atatcttgcg ttttatcatt taaaaagcgc acagttcctt ttaaataagc atttgtagga
    13321 ataacattat aagtagttcc tgcacaaatt tgacctacgg taatcacccc tgcttcataa
    13381 ggggctaaac gtctagaaat aacactttgt atattattta caaattgcgt tgtcataatt
    13441 ataggatcta tacaagtgtg cggatgagct ccatgccctc ctctgccaat aaattccaaa
    13501 tcaaaaatat ccgttccagc catcatttca ccacttacaa tttgagcagt attttcaagc
    13561 aaaggccccc ataaatgaca accaaaaact gcatcaacat aaggattttc caatacacct
    13621 gattctatca taggtttagc tccaccgctt ccctcttctg cgggctgaaa cataaattta
    13681 atcgtgccac aaaattcatc tttaagctca tttaatatca aagcagctcc caaaagccct
    13741 gctgtatgtc catcatgtcc acatgcatgc atcttaccat caatttttga agcatagctt
    13801 agattagttt tttcttgcac aggcaaagca tccatatccg ctcttaaaag aacacatttt
    13861 ggttttttct gactcttctt ttttccttct ataatagcta aaattcctgt ttttgcaata
    13921 tttttttgat atttaatgcc aaactcatct aaaattttac acactaaatg ggctgtattt
    13981 tcttcttcaa attcaagctc aggatgcata tgaatttgat gtcttaaatc aactacttta
    14041 tcatagtact ttagtgctaa attttcaacc agcttttgca ttcttttcct taatctaaat
    14101 cttttatttt ctcatctgct tttttactgt caagtttttc caaattcgcc tccatttttc
    14161 gtatttcttc ttctccacta cgcactaatt ttgcatcaat tttggaaaaa tctccagttt
    14221 tttatttgga tattctacct tagaaagtat aaaacgcaat aaatttaatc ttgctttttt
    14281 cttatcatca gaagaaataa tagtccaagg acaagttgga gtattagatg ctaaaagcat
    14341 agagtattta gctaaagtat atttatccca taattcttgc gatttttgat ccacaggaga
    14401 taatttatat tgtttaagtg gatcgcttcg gcgtttttca aaacgttttt ttgctcgtct
    14461 tttgatactg aaaaataaaa tttaaaaaaa taatatcact atttgaaatc atattttcaa
    14521 acaaaggcac ttctcttaaa aaatctttat gttgttgcgg tgtacaaaaa cccataaacc
    14581 ggttctactc ctgcacgatt ataccaagat ctgtcaaaaa tcacaatctc accggctgag
    14641 ggcaaatgtg ctatataacg ctgaaaatac cactgtgttt tttccacatc actaggtttt
    14701 tcaagagcca caacgcggca accacgcgga tttaaatgct caatcaaacg tttaatcgcc
    14761 ccaccttttc cagccgcatc acgccccttc tataagtata agaaccttta aacccttggc
    14821 tttaacatga ttttgaaatt tcaaaagctc aatttgcaaa ttctttaaat ctttttcata
    14881 ttctattgta cttttctttc ttttaacaga aacataaatt tcattctttt taacagtcgc
    14941 ttgcgctttt ggagaattgt tttcttgcat tttcaaacct ttatagagta tttaaagtaa
    15001 atttaccata ataaattata attgaagcta aaaataaagg aaaaaataag tttttaggaa
    15061 atttatgcgt atttttggta ttattttatt aagtttttgt ttatgttttg cttctatatt
    15121 atctttaaat gaagctttta atgtaaaatc aaactcttat aataactcta tctcaattga
    15181 tattgaactt ggaaaagata tttatcttta ttctaataaa cttaaattat atataaacga
    15241 aaaagatata agttctttga ttaatctacc tcaaagttct acaagaggta atgaaaatgt
    15301 ttattatcaa aaattaaatt tagctttgcc aaatttatta ctagagcgct ttgcaaaaaa
    15361 taccacaaat ttaatcaaac tcgaatttca aggctgttct gaacaaggct tgtgttataa
    15421 tcctcaaact tggtactttg atctcatttc taaaaaagat gcttttgaaa tttcaaaacc
    15481 ttacaaagct caaaaaacag ataaaaaaac taaaattgaa tctgaagaaa gctctatagc
    15541 aaatttttta gcaacagata actttttttg gattttgcta agtttttttg gctatggact
    15601 tttactctcc ttaacacctt gtattttacc tatgattccg attttatctt ctcttatcgt
    15661 agcaaaaagt aatgctaaat tttcaaaaaa atatagtttt tttctctctt ttatctatgt
    15721 ttttttcatg tctttagcct atgctattgc tggagttata gcaagttttc taggagcaag
    15781 tattcaagga attttacaaa aacctattat tttaattctt tttgctctaa ttttcatagc
    15841 ttttgctttt gctatgtttg gagcttttcg ttttgaattg ccattaagat ttcaaacctt
    15901 tatacataaa aaaagcgaaa aagggaaagg agttttaggt atagccatca tgggattttt
    15961 atctgcttta atagtaggtc cttgcgtagc agctccttta gcaggtgctt taatttatat
    16021 agccaataca ggcaatgctt tattaggtgg tagtgcgctt tttatcatga gttttggcat
    16081 gggtatacct ttgcttttca taggcttagg attaggtttt attaaacctg gtttttggat
    16141 ggaaaaagta aaaattttct ttggttttgt tatgttggct atggctattt ggatactttc
    16201 tagaattatt gaagaaaatt acattttaat tgcctatgga attttaggtg tattttttag
    16261 tgtttttatg ggaatttttg aaaaaagttt tacaataatt tctaaaatta aaaaaagtat
    16321 tttaattctt attttagctt attctctaag tattttccta ggaggacttt ttggggctaa
    16381 aaatttctta aatcctttaa atttcaatac tatatctgcc tcaaaacatg ctttaagcta
    16441 tgattatatc aacaattttg aacaattaaa gcaagaaata caaacaaata caaagcccat
    16501 aatgcttgat tttactgcat cttggtgtga aaattgcaaa cttttagatg aattaacctt
    16561 tagcgatgaa agaatcatac aaaaaatgca aaattacaaa cttatcaaag ttgatgtaag
    16621 cgaaaataat aatgaacaaa ttaaaaccat gaaagaattt aatgtttttg gcccacctgt
    16681 tttaattttc tttgaaaatg gaaaagaaaa attaaaaatc acgggtttta tcagtgctga
    16741 tgatttatta aaaaaaatag aaccatgaaa attcaaagtt tgcaaatagg gaaaattaaa
    16801 aactataaaa atttccaaag cgcatttatt aaagatactt acctagaaga aacacaaatt
    16861 gattttctag gtgttttaga tgatcaaata gctgataaaa ttcatcatgg aggctaccat
    16921 aaggctattt ttgccaactc ttgtcaaaac tatcccatat gggaaagatt tcttaataaa
    16981 aagctaaatt ttggctcaat gggtgaaaat ttgagcatcg atgggctttg cgaacaaaat
    17041 gtttgcatag gtgatgtaca tcaaatttca aatgcaatac tgcaagtaag cgaacctaga
    17101 aaaccttgtg taaaaatttc tagaattcac aataattcaa attttacaca tgaaattttt
    17161 aaaacgggct tgagtggatg gtattataaa gttttacaag ttggacaaat acgaaagcat
    17221 gaaaacatta aaattttaga aaaaaattct acttcactta gtgtatttga actcaatcaa
    17281 cttttttact ccccgcatca aattcttaag caaaatccga atttattaaa taaattagaa
    17341 aaattaaact ctctcatatc tcaaaattgg cacgaaacta tacacaaacg cttaaaaaat
    17401 acttacgata taagctatat ggatagctta taagttttta aagttatttt taggtaaaat
    17461 aattcttttt cgaaaggata atcatgcaaa gacaaacatg gagtagcaca ctaacttata
    17521 ttctaacagt tgctggagca accataggat ttggagcaac ttggcgtttt ccctatcttg
    17581 taggagaaaa tggtggcggt gcttatgtat tagttttttg tatagctatg attatcatag
    17641 gcattcctgt tattttagtt gaaaatgtca taggcagaaa agcgatgaca aatagcgtag
    17701 atgctttcaa acaaaaatgg caaagtattg gatatatggg acttttagga agctttggca
    17761 taatggctta ctacatggta cttggaggat gggttttagt ttatatttgg gaattaaccc
    17821 tagggaattt tagccttgcc aatgtagtaa gcaaagaatt tactcatcag ttttttaacg
    17881 acaaaatagc cttcaatcct ttaggagttg gtatttttac cactgttttt gtaattatta
    17941 attatattat tttaaaaaga ggcattatag atggtataga aaaatccgta aaatttttaa
    18001 tgcctttatt atttatctgt cttattattg ttgtaggacg caatttaacc cttgatggag
    18061 ctatggctgg agttaaattt tatcttgaac ctgattttag taaaatttta tcaccaaaac
    18121 ttttaatcga tgttttagga caagtctttt ttgctttatc cctaggtttt ggggtaatga
    18181 taacactttc atctcatctt aataaaaatg aaaatatggc aaaaaccgct atttatacag
    18241 gagttttaaa tactatcata gctgttttgg ctggttttat gatttttcca gcacttttct
    18301 cagcgggact tgctccagat agcgggcctt ctttggtttt tgaaacttta cctatagcat
    18361 tttctcatat ccattttggc accattgtgt gtattttatt ttttgtctta ctcttgattg
    18421 cagctttaac cacaagcttg ccaatttatc aagttattat tagcgtatta gaagaaaaat
    18481 ttaaatattc taaaaatctt tctattaacc taactctagg gtttatcttc atacttggca
    18541 atcttccttg tattctaact tatgggcctt ggcgtgatat tgttatcatc aaaggaaaaa
    18601 acatttttga tagttttgat ttcattagtg gaaatatttt gtttgtttta actgcatttt
    18661 tttgctgtat ttatgtaggt tggattttag gcaaacaaga aagtctaaaa gaacttagca
    18721 ataacaatac acttaaaagt tcatggtttg gaatttggtt ttattatgta aaatatatag
    18781 tacctttgat tattttaatc atttttatct atggaatttt aaactgattt tttaaattta
    18841 tatctctcta acatagtgga atttcctaaa attccacctt gatgtatata aagcaatggt
    18901 tttttccact cttgttttaa tgctatactt aatcctaaaa tatcatacaa caagtcaaat
    18961 tctatattgc actttaactt taaatccata taaagctcat aaaattcttt atacggctta
    19021 gcaaagtgat attttttatc acttgttaaa aattctaaat ttgaaaaatc atagcttgga
    19081 tctaatgtta aaatttgttt tttaagatat ttaatatcac ctacacaagc gcaagtaaat
    19141 actttaaatt tagaatactt tgccaaaaaa gctgccgaag tgcctgtgcc cgaaggtaaa
    19201 aaaatatcaa aatcaagctt taaactttga ctttgcattt gaatttcttg agcaagttcc
    19261 atatagccat attgagcttc taaattagct atgccttgtt ctataaaaac atcatctttt
    19321 ttacacaaag acaaagcaaa ttgctttaag gataaagaat ggatattttc tacaaaatca
    19381 acaccatttt ctaaagctaa agcatagttt ccacaaggat tattcttaag aaaagtagaa
    19441 attttttcac aagcaaaaac aagcttatat gatctttgtt tagcaaaaat acttaatgcc
    19501 gccaaagcat tactttggct tcctccataa cttacaaaag attgattttt aggatatctt
    19561 tgatggatat aaaaagcaag tttcctagct ttatttccat taatttcccc taataaatca
    19621 tctcttttaa tataaaattc aaatccgtta aaattgattt tttgtatagg actaattgtt
    19681 ttaatgaaat tcaaagaatt tttctacatc ctttaaagca ttatcatttt taatgctaaa
    19741 ttttatttct atgcgacgac tcttatcctt atcttcaact ccgttgacaa acacaggatc
    19801 tgaaaaagaa cgtccacttg ccattaaaag cttttgaagc ttatcactct tataaaaagt
    19861 atagataaaa ttcatcacct cataagctct tttttgcgac aaatctaaat tataaatata
    19921 agatccatca ctatcagtat gtccttcaat aatgatattt tcaatgttag aaaaaatttt
    19981 tggatcttca agaatagcat caaaatattc gcttaagatt tttctcaaac ttgcctttgc
    20041 ctcatttttt aacacataag aatccttatc aaaaagtact tcagcaggca aagaaataga
    20101 tcctgtcttt tcatctatag tgatattatt atcaagtttg ctttgtaatt ccttgcttaa
    20161 attttcacga atcaaaccaa gattttgcac cttttcttta gctttttgaa aatcttcttg
    20221 taaattttta agctcttcat cttttttctc tagttgacct agtaaaatca aaatttgctt
    20281 atctttatta tctaaagttg agtttaaatc tttgcttaac tgcttgtaat ttgtaatatt
    20341 agcctctaat tctgcttttt gagaattagc aagatttaaa gcactagaag cattgtttaa
    20401 atcagaactt agtttaaaca ctatggcttc tttatttcta agctcttctt tactctcctc
    20461 taagcgtgcc tcttgtttat tgagattatc tttaatttct tttaaatcac tttgagttaa
    20521 aacatatttt acaacaatag cacctattag caaaataaaa acaaacagca atcctgccat
    20581 taaatcagca taagctatcc aaaaattgct atcttctttt gactcatttt tcatttattt
    20641 tctttatctt cattttttag ctcatcattg ctttcttgct tagatatttc tgcttgaatt
    20701 tcatcttgat tttcttcagt cttagactct gaaaaatctt ctatttgttt ggtttcattt
    20761 tctttattct gattttcatc cccagaaagc ttgctcatca tttgacttgt ttcttcatca
    20821 agtgctttca tttctttttt aagctcatcc atcattttga ttttagcatc aatacttttt
    20881 tcttcttcat atacttcttt aaatttatgc ataccttcaa acaagcttgc tttaaatccc
    20941 tcaaaaacct tttcttgact ttccaacatt gctttttcat aaagttcaaa atttttacca
    21001 aaacgctcta ttttttcatc gaatgcactt agtgtcttat caagatgatg aattttatca
    21061 ctactgatat caagcaagcg attatattgt tctgacattc ttgtattgat ttcttttaaa
    21121 ttttgattga gcaaacctat accatttaac atttcactat aaagctttcc aagatcgcgt
    21181 tgatctcttt gtgctttact aagctcaccc atggtttgtt tgatatgttc actacttaat
    21241 ctaatagcct tttcttctac atttagcata tcttggaaaa taccaaactt tctatcaata
    21301 gcatgatcaa gctctgcaaa aaaatcatca ttactaactt gtttaaaaat tgctccaatt
    21361 ttttcaaaat gttgcaaact ttcagttaaa tatctttgat caagctcttc ttttgtccaa
    21421 aaaaatccac ttgtagcgtt tttttgacga tttagcaaac gatctatttt gcttttacca
    21481 tatttttcaa aaaacatcca ccataatgca agaaaaattc cataaattga aacataaaaa
    21541 gcagttccca ctccacttaa caaatctgca atttcttgtt ctaaagcggc tgtatcacta
    21601 gaactaaaat ttggcattga aaaagctata ctgataaaag ttcctaaaat tcccatcatt
    21661 ggaaaaattg ccgaacctat actagcaaaa ttctcatttc ttgcaccctt aatatatgta
    21721 taagcaaagt catcaaaatt ggcatttgat ttcgtgtctt tccctatggc aagaaaatgc
    21781 ctcataatat gtctttttaa agcctgttta aattcatctt tttgttgttc aaaaatacta
    21841 tacgcatact cagcactatg tctagcaaaa atcaatgctg taaaaaaaat cacacctgtc
    21901 ataataaccg tatgtaattc gaccttaaag tcaattacat taaaataacc caataaaatc
    21961 aaaatataaa gaaaagctgg aataaaaata attttaaaat aaaccaaaga acctcttgca
    22021 tctttgcctt caggcaaaac aagttctgaa atttcatctg atttaatatc catgaaacca
    22081 atacctcatt aaaaatttta ttttaaagat tgctacttaa tttgataaaa atttttaaaa
    22141 caaaataaaa ctaagctttt aaaatgctta gtttttgttt atacagttta aatcttcaaa
    22201 agcgatttca agacgtttta tcatgctttc ttcaccgctt cttaaccaaa cacgcggatc
    22261 atagtatttt ttatttggct tgtcatcacc ttctggattt ccaatttgtc cttgcaaata
    22321 agccctattt ttaagttcat attcacgcac cccatcccaa aaagcccatt gagtatctgt
    22381 gtcaatattc atcttaatta cgccatagct tactgcattt ttaatatctt ttagctcact
    22441 accgctaccg ccatgaaata caaaatttat aggcttatcg ctatttaaag caaatttatc
    22501 ttttacaaat ttttgcgaat tttttaaaat ttcaggttgt aagctaacat ttcctggctt
    22561 gtaaactcca tgtacatttc caaagcttgc tgcgattgaa aatttatcac taatttttcc
    22621 aagtctttca tatgcaagag ctacatcttc tggttgggta taaagcttgg aattatcaat
    22681 acctgtatta tccactccat cttcttcgcc acctgtacaa cctaattcta tttcaagcgc
    22741 gacacctaaa gcatcaagtt tttgaagata aacttcacaa gtgctaagat tttcttctaa
    22801 actttcttcg ctaagatcaa gcatatgaga actaaataaa gcttgtccat gggttttttt
    22861 atattgtgca tttgcctcaa taagcccatc aatccaaggc aaaagttttc ttgcagcatg
    22921 atcagtgtgt aaaatcacag gtacaccata agctttagca agtaaatgca catgtttagc
    22981 cccactaatt gcacctaaaa cttctccatt aggacaattt tttcctgcat aaaattttgc
    23041 cccaccattt gaaaactgga taataactgg agaattaact ttttttgcag cttctaaaac
    23101 tgcattaata gaatcagttc ctacaacatt aacagcaggg atagcaaaac cctctgcttt
    23161 agcatagtca taaactttat taagctcatc tccgctaatc acccctgctt ttacaatgtc
    23221 taaaacaccc attatttata ttccacttta gcactattta agagatcttg gcctttttga
    23281 ttgataactt ttttaaattc ttcaaattta agtccgtttt caataccttg ttttacttca
    23341 tcaaatttga tttgaccttt agcctgcgaa ttttctttta agattacatg ataaccaaaa
    23401 ttcgttttta ctggagttgt agtaatagta ccatttttaa gtgcgaaagc agcatctgta
    23461 aaaggcttta ccatagttga ttgatcaaac caaccaagct caccaccttg gttttttgaa
    23521 cctggatcaa ttgatttttc tttagcaagc tcgctaaatt tagcatctag ttctttacct
    23581 tttaaacctt taagttcgtt aataatatcc ttagcttctt tttctgtcgc tactaagata
    23641 tgttttgctt gcactctcgc aggttttaca tatttgtctt tattttgatc ataaaaagct
    23701 ttaactttag ccgcatcaat tttaatagta tttaaaattt tctcttgata aacattaaca
    23761 agtattgcat cttttgcacg atcaagttct tttgtgtata aaggatcttt ttctaaattt
    23821 tgttttttag catcttgcaa aattaaattt tgcataatat attgctgaat aagagctttt
    23881 ttttgattat ctggcaaagt tttaaaatcc tgtcctctaa gcataggggc aaaaaattca
    23941 cttacttctg tatcgctaat gctcttgcca ttaacagtag ctactgtagc tgcatttaca
    24001 tttaaaacta cacctgcaat caaagttgct gcgactaaag aaaatttttt cattaggttt
    24061 cctttttaat aaaatgtata taaaatcaat tatatctaaa cttggtttaa agctaattaa
    24121 ctaaaattaa aaaatgaaaa gaaatttaga aatcaaagaa ctttttttaa aacattttga
    24181 caagcctgta acagagctta aattttcaaa tttatatgag cttttagtct gcgtaatgct
    24241 ttcagcccaa tgcactgata aaagagttaa tctcatcact cctgatcttt ttaaagctta
    24301 tcctgatatc aaatcccttg caaatgcaaa tttatcaagt cttaaaacct atatacaaac
    24361 ttgttcattt tttaataata aagcacaaaa tcttataaaa atggcaaaag cagtttgtga
    24421 aaattttgac ggagaaattc cccttgatga acaaaattta aaatccttag caggcgtagg
    24481 acaaaaaacc gctcatgtag ttttaataga atggtgcgga gcaaatttca tggctgtaga
    24541 tactcatgtt tttagagttt ctcaccgctt aggacttagc aaagcaaaaa ctccagaagc
    24601 tacagaagaa gatttaacac gcacatttaa agataatctt aactatcttc atcaagccat
    24661 ggttcttttt ggacgttaca cctgtaaagc taaaaaacct ttatgtaaag aatgtttttt
    24721 aaatcatctt tgcaaaagta aagataagga acttaaatga aaattttcat ctttttactc
    24781 actatatctc ttaatatttt tgccttagaa ccttacaagc ctagtgctga tttttcttct
    24841 tattttaaca atataaattg ctcgcaaatc ttagataagt ttttttatct aaattgctat
    24901 gattataaac tcaaaggcac aaaagccgtt gcttataaag tagaggcttc aaatttgaaa
    24961 gataaacaaa tcaaaaaacg ccctcgcttt gaagatgata caaatatacc taaaaaatac
    25021 cgcactactt ggagtgatta taaaaacagt ggttacacac gaggacacac tgcacccaat
    25081 gcttctttta gctttagtaa agctgctcaa aattcagtat ttttaatgag caatattacc
    25141 ccacaaattg cacaaataaa taataaaatt tggaatgaaa tcgagcaaag agaaagaaat
    25201 ttggctttca aatttcaaag tatcgaagtt ttaaatttag tactttacga taaagaacca
    25261 caatacatta aaaaccgtat tgctatacca agtttttatg taaaaattat taaaactccg
    25321 aaatttaaag aatgctatca agtaccaaac catgaagtaa atgatgaaaa tattaaacag
    25381 tatcaaataa attgtgataa attttaaggt ataaattatg gagataaatg ctcttacgat
    25441 aaccactctt tatatcatag gtatttccgc agaaggaatg acaggggctt tagctgcagg
    25501 acgccataaa atggatcttt ttggagttat ttttattgct ctcgtaacag caattggagg
    25561 cggaagcata agagatgtgc ttttaggaca ttatccttta acttgggtta aacatcctga
    25621 atatattatt ttaatctgtt tttgcgccct tgtagccaca aaaattccgc gcgtagtaac
    25681 caaacttgaa actttatttc taactcttga tgctatagga cttgttgttt ttagcatact
    25741 tggagctcaa atagccatag atcaaaacca tggctttatc atagccgttg ctgctgctgt
    25801 aattaccggt gtttttggtg gaattttaag agatatttta tgtatgagaa tccccttggt
    25861 gtttcaaaaa gaaatttatg caggaattgc cataattgca ggagtaatct attattctct
    25921 aataatttgg cttgagctta atgccctagt ttgcacactt ttaactcttt ttataggagt
    25981 ttttgcaagg cttttagcta tcaaatatca atggtcttta cctatttttt cttacaatga
    26041 agaaaaataa tttatcgttg ctttatacaa gtttgctaag atattaaaaa ttttaggaga
    26101 ttaataaatg cgaagactaa gtattttact tgcaatttta atagttatta atataacagc
    26161 ttgtgatagt aaaacagaaa attactacaa aaatcttcct agcgaagcaa aagaaaaagt
    26221 gaaagaatgc aaagaaagcg gaactcttag cgaagattgt attaatgcat taaaagttgg
    26281 tgttaaacca acaaatgaag agggtaaata cagtccaaac acaccgaaaa aatctgataa
    26341 tcaaatatta gaagctttaa aacaaaatga tttaaaaaaa gaaaaaacca caaaagatat
    26401 taaccaaagt tcagaaaata atgaaagtat tataatacca cctatagcag aaacaccttc
    26461 tgaaatttat ccttccaaaa caacagaaaa caatcaaagt tctatcttta gcgatggtgt
    26521 taatatgaca caggaaaaat gaccatgaaa ataactcttt ttttaagcct tattggtata
    26581 ttttttgcag catgcgaaca aaccaaaagt gtagaatatt atcaaaatca ccccgaggaa
    26641 gcaaaaaaaa gaagtttaga atgcagacac aaagctatca ttagtcaaga ttgtgttaat
    26701 gcatataaga taggttttcc aaaagatgaa tgggaagatg aaaatatttc taatccttaa
    26761 aagctatgaa agtttcaaaa tttgcccatt taaaaatact ttctattttc ttaaaacctg
    26821 ccttttctag catgtttaaa ttttcttttt gactataagg aattaaaaca ttttctaaag
    26881 cctctctttt agctgcaatt tcaaatttag aataaccttg tttttcttta taatctgcat
    26941 aaagttctat gatattttta gacaaaaaag catcttcata aaggattttt tcactcataa
    27001 tcaaaatgcc tttagagttt aaatttttat aaattttatc aagcaattct tgtcttttag
    27061 gagggcgaat aaactgcatg gtataatttg ctacaaaaac atcgcaagta aaaaaatcaa
    27121 attcacataa attagcttca aaaaaactta tatcaagtcc ataagcttta gcttttgact
    27181 ttgcaacttc aagcatagaa gcagaattat ccacgccaaa aagtttaaaa tcctttctta
    27241 gatttgccaa aaaaatcaaa aaattagcac ttgagcagcc caaatcacaa acacttgcat
    27301 ttgtaggtaa aattttagcc aataaattgc cacaaagttc taaattttct ccataaaatg
    27361 gcacagaacg attgatcata tcgtcaaaaa cactagccac gcttttatca aattcaaatt
    27421 gttttttagg gttttgttta aaaagttcat ctttcatcat ttttccttaa taattctata
    27481 gcttgctcta tgtctttagc aatttgattt ttaagttttt ttagatcttg aaatttttga
    27541 ttctctctta gaaaagatat aaactcgagt tcaaaaaact ctccttgcgt gaaattttca
    27601 cccaattctt ctaaaatatg actttctata gcaaaatttt catcgcttga tcttacacct
    27661 aaaaaactca cacttttata agtttttctt tgacttttta acaaagtaac ataaacacca
    27721 ttttgaggta aaaaataacc ttcacaatct aaatttatag tcgcaaaaag ttctttagag
    27781 cccaaacctt gtcctttaat catcttccct ttgatactat aatctcttcc taaaaattct
    27841 tttgcttttt gcaaatttgc ttttgataaa aaatccttaa ttaaacttgc atgaacacct
    27901 attccgtcta tgctaaattc atcaactatt atagttttta tcccacttaa agactcaata
    27961 tctttagcat tataagctct atttttccca aaagaaaaat catatcccac cactataaat
    28021 tttaaattga caaattcttt tttcaaaaag cttaaaaaat ctctaccatc taaagatttt
    28081 atactttcaa aatccacttc tataactttt tttcctgaaa tttcttcttt ttgacgattt
    28141 gaacaaagaa attgaccctt aaatttatta ataactaata aagccccatt ctcatctaaa
    28201 cattttacaa gttttagatg tcctaaatgc ataccatcaa aacaacctat ggctaaagag
    28261 gtaatattaa tttttgatat agtagtaaaa atattcaaca ttaccttcct ttcctttaat
    28321 gcttgatttt tgcgtatttt ttaaaagcca acccaattta gcacatgctt tttcaaaatc
    28381 cattcttgcc tttaagattg ccttatcatc ttttaaaaca ccttttttat ctcttttgat
    28441 attttttccc acttcaaact gaggtttaaa aagtaaaata atttccttta aagctaaatt
    28501 atcaatataa taaagtaaat taataagaga aataaaactc acatcacaag taacaagttc
    28561 aaatttttct tcacttttaa aggctctaag atctgtattt tcatgcaaga taattttttc
    28621 atttactctt aaacttggat ggagttgatt actacccaca tcaagagcag tgatttttaa
    28681 agcctgattt tcaagtaaaa tttgaacaaa accgcccgta ctagatccta tatcaagaca
    28741 atttttatgt tttatttcaa tatcattttc ttctaaaaat ttttttaatt tcaaagctgc
    28801 tcttgaaaca taaatttcac ttaaaagatc caattttaac tcattggcta aaagtatatc
    28861 ttcaggattt aaatcttgcg ttttttttaa attttctaaa aaatttttca catcaaaaga
    28921 agctttaaaa ctcttaccat taagtaaaat ctcttcattt tctataagct ctaaggcttt
    28981 atttctactg atatttaaac gctttgaaac aaaaaaatca aatctcattt taaactctca
    29041 tttattcttt tttctaagtc ttctttttct ttagaaaacc accaaatacc tatttcaaaa
    29101 gcattttttt taaaaatttc tctaagatct ttaagatctt tttcaaaaag atctttttct
    29161 ttttgaatta aacttaagtt attatctttt aaaaaattaa aattattcat ccataaaagt
    29221 atttgctctt gttcggattt taaggcatta tttctttgct cttttaaaaa ataatttcct
    29281 aaaaccatga taaaacataa aaataaaaca attattttta tctttatttt caaaacaaaa
    29341 ttaaaaacaa aagccaaaag agaacaaaac ataaaaaaat taaaaaaatc aaaaataaaa
    29401 tttaaagccc taaaccccaa atatccaaaa taagaaaaaa taaaaaattt taaatttgaa
    29461 acaaaatgta aaaattcaga taaaaa
//
LOCUS       DARBBO010000009        29374 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.009, whole genome shotgun sequence.
ACCESSION   DARBBO010000009 DARBBO010000000
VERSION     DARBBO010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29374)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29374)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29374
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.009"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(176..523)
                     /locus_tag="SB854_000282"
     CDS             complement(176..523)
                     /locus_tag="SB854_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956327.1"
                     /translation="MKKSILFASALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGTSATPNTQAIPV
                     ARKIEIQCYKKAY"
     gene            complement(587..1192)
                     /locus_tag="SB854_000283"
     CDS             complement(587..1192)
                     /locus_tag="SB854_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956328.1"
                     /translation="MFYLNKILYFFLILFLLIGILGFFINSNPSNQIIKKPYLPFLEI
                     GDLVFRAGIGSESFLIENLSQSPYSHIAMVVKTSPTILIHATTDDDKNAKNQVILSSM
                     DDFLKLSHKIAIKRLKFDEKTKQKIVAKALEHLGRKFIISTDKDAFYCTTFLEQSINS
                     ITPFHLQYTLIKAPFNEGLYLFPQTFFENNQSVLIYESQNF"
     gene            complement(1176..1517)
                     /locus_tag="SB854_000284"
                     /pseudo
     CDS             complement(1176..1517)
                     /locus_tag="SB854_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
     gene            1760..3055
                     /locus_tag="SB854_000285"
     CDS             1760..3055
                     /locus_tag="SB854_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate transporter"
                     /protein_id="HEG0956329.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYICFM
                     IGLAIILPLNYPNLKTAKKVLDRASAGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIKDHIKRSFFYI"
     gene            3289..5258
                     /locus_tag="SB854_000286"
                     /pseudo
     CDS             3289..5258
                     /locus_tag="SB854_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="oligopeptide transporter, OPT family"
     gene            5332..6135
                     /locus_tag="SB854_000287"
     CDS             5332..6135
                     /locus_tag="SB854_000287"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HEG0956330.1"
                     /translation="MENLYALILGIIEGLTEFLPISSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLEFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLGNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAGSEFKL"
     gene            6266..8074
                     /locus_tag="SB854_000288"
     CDS             6266..8074
                     /locus_tag="SB854_000288"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEG0956331.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKSEALAKFQNDDLKQEVLLRIPDRAVSIYKQGEFEDLCRGPHVPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALDEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTIQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     AKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            8071..8589
                     /locus_tag="SB854_000289"
     CDS             8071..8589
                     /locus_tag="SB854_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEG0956332.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            8628..9719
                     /locus_tag="SB854_000290"
     CDS             8628..9719
                     /locus_tag="SB854_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEG0956333.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKMPIFSNFSCEF
                     EVMQKDANMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            9761..13223
                     /locus_tag="SB854_000291"
                     /pseudo
     CDS             9761..13223
                     /locus_tag="SB854_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter outer membrane beta-barrel
                     domain-containing protein"
     gene            13304..14332
                     /locus_tag="SB854_000292"
     CDS             13304..14332
                     /locus_tag="SB854_000292"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEG0956334.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTPLNLCFENKNLDELELDLLFLATPHKFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFSSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKEKITLQFTPHLVPMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            14342..14788
                     /locus_tag="SB854_000293"
     CDS             14342..14788
                     /locus_tag="SB854_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG0956335.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     NLSVVAVIDEEIVGSILCGHDGRTGGFYHVCVHKDHRKKGIAHEMAKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            14792..15637
                     /gene="argB"
                     /locus_tag="SB854_000294"
     CDS             14792..15637
                     /gene="argB"
                     /locus_tag="SB854_000294"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEG0956336.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATIEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDENFNTYNINADDAACAIAKALRAEKLAFLTDTAGLYEDFNDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            15641..16828
                     /locus_tag="SB854_000295"
     CDS             15641..16828
                     /locus_tag="SB854_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEG0956337.1"
                     /translation="MKMDYKEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGF
                     MQGLSLDKSVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(16848..17477)
                     /locus_tag="SB854_000296"
     CDS             complement(16848..17477)
                     /locus_tag="SB854_000296"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HEG0956338.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            17566..18114
                     /locus_tag="SB854_000297"
     CDS             17566..18114
                     /locus_tag="SB854_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HEG0956339.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDNALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEV
                     SFLKQSALNYVDFKNEFLKDLQ"
     gene            complement(18083..19456)
                     /locus_tag="SB854_000298"
     CDS             complement(18083..19456)
                     /locus_tag="SB854_000298"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEG0956340.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDTEDIEFLRKQGIFDTKFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCVKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQEGGVRIDSGNLLELSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLELVYKEKRLLKKSSLNTIQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(19443..20465)
                     /locus_tag="SB854_000299"
     CDS             complement(19443..20465)
                     /locus_tag="SB854_000299"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEG0956341.1"
                     /translation="MQRKRIYNPNSNETLGDRKIFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTVGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(20468..20890)
                     /locus_tag="SB854_000300"
     CDS             complement(20468..20890)
                     /locus_tag="SB854_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG0956342.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYIPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFVRKDRLNLHDILTQSCIATKSIKKG"
     gene            complement(20891..21499)
                     /gene="pyrE"
                     /locus_tag="SB854_000301"
     CDS             complement(20891..21499)
                     /gene="pyrE"
                     /locus_tag="SB854_000301"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEG0956343.1"
                     /translation="MNLEQIYKDCGAYLEGHFLLSSGKHSQFYLQSAKVLEDPKLAAK
                     LCDELAKIITSYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKSEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            complement(21502..22065)
                     /gene="frr"
                     /locus_tag="SB854_000302"
     CDS             complement(21502..22065)
                     /gene="frr"
                     /locus_tag="SB854_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEG0956344.1"
                     /translation="MIMLNEIFNKQKTQSEKSLEALKKDFTTLRTGKVNTHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAATNIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDTYTTKIDESVKNKESELLKV"
     gene            complement(22075..22446)
                     /gene="secG"
                     /locus_tag="SB854_000303"
     CDS             complement(22075..22446)
                     /gene="secG"
                     /locus_tag="SB854_000303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEG0956345.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGTYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPAT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            complement(22550..23245)
                     /locus_tag="SB854_000304"
     CDS             complement(22550..23245)
                     /locus_tag="SB854_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEG0956346.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            23406..24041
                     /locus_tag="SB854_000305"
     CDS             23406..24041
                     /locus_tag="SB854_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEG0956347.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRIGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            24038..25921
                     /locus_tag="SB854_000306"
     CDS             24038..25921
                     /locus_tag="SB854_000306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEG0956348.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANMSKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSNVNLDSFKSKITNSEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVSFVNIGKIVISALVLVFFISLRRFFANIVYFFLVQ
                     FFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(25944..26915)
                     /locus_tag="SB854_000307"
     CDS             complement(25944..26915)
                     /locus_tag="SB854_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HEG0956349.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(26925..28106)
                     /locus_tag="SB854_000308"
     CDS             complement(26925..28106)
                     /locus_tag="SB854_000308"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HEG0956350.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDIYGNPNSLHQYGSATHP
                     ALREALDKLYAGLGANDLDDIVITSCATESINWVLKGVYFDYILDRERNEVIISSVEH
                     PAVAAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKREHRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            complement(28284..28685)
                     /locus_tag="SB854_000309"
     CDS             complement(28284..28685)
                     /locus_tag="SB854_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG0956351.1"
                     /translation="MTYNEKIISMNNDLLDHQHKELFEISKKLSLMNQCHVGTKELKI
                     VLRELLIMINRHFSDEEAFMREIGYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEEKFKK"
     gene            complement(28822..>29374)
                     /locus_tag="SB854_000310"
     CDS             complement(28822..>29374)
                     /locus_tag="SB854_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956352.1"
                     /translation="LKPYLTKNAEVSKSGLLMNFIYHDIKTQNEKEFNFFMKPATLEL
                     SSHQNLQKILKGETDIEDYIKKENEKKMSFDLYLYVNGVDKKTSTQDKLSVFFQQYIN
                     YQKDMDLREFANSSSIFQIYIDQNRNDFDALKKQYQNQSQDTQRLEEANQLRSSSIEN
                     FLDRRQKQANINKILNSYMSVMV"
BASE COUNT         9949 a         3909 c         5053 g        10463 t
ORIGIN      
        1 cctaatataa aacaaaaaac aataaaaatc cattttttca ttatttgcct tagatgaaaa
       61 tataagtgtt attttataaa ttgcttgtta aaaaagagtt taaattttta tttaagagta
      121 atgaagtagt ttgccgaaga atgattttta taaatccctt gttaagggat ttatattaat
      181 aagctttttt ataacattga atttcaattt ttctagctac tggaatagcc tgagtatttg
      241 gtgtagcaga tgttccataa gaaattttac tttctaaaaa atttccaacc tgtaaatctt
      301 taaaagttcc atctttatct gttccaaaaa taccacaatc atccatttct atttcggtat
      361 ttggtagaac ttttatagcc atttgtccgc cataaataga gtcaataagc aaggttttgt
      421 tgttatcata aatttgtgca atagtacctt caagttttag actatctgca aaaagcattg
      481 agctagctaa aagtgctgat gcgaataaaa tacttttttt cataattatt tctccttaat
      541 gtaaagtgat gacattataa aatttttaag tgaagtgaat gtgaaattaa aaattttgac
      601 tttcataaat taatacgctt tgattatttt caaaaaaagt ttgtggaaaa agatataaac
      661 cttcattaaa aggagctttg attagagtat attgaagatg aaatggggta atggagttaa
      721 tagattgttc taaaaaagta gtgcagtaaa aagcatcttt atctgtactt atgataaatt
      781 ttctgcctaa atgttccaaa gctttagcaa ctattttttg tttggttttt tcatcaaatt
      841 ttaatctttt aatagcaatt ttatgactca gttttaaaaa atcatccata gagcttaaga
      901 taacttggtt tttagcattt ttgtcatcat ctgttgtagc atgtatgagt atagttggag
      961 aagttttaac taccatagcg atatgagaat aagggctttg acttaaattt tctattaaaa
     1021 aactttcact tcctattcct gcacgaaaga caagatcacc tatttcaaga aaaggtagat
     1081 agggtttttt gatgatttga tttgaaggat tggaatttat aaagaaaccc aaaattccaa
     1141 tcaataaaaa taaaattaag aaaaaatata aaattttatt taagtaaaac aagccatttt
     1201 ctatcttttt tagcaagaaa aacattgctg ctttgattat tatcattgtt aaataacact
     1261 aaaactctga ttttagcaga atctttattg attgtttttt cttcaatttg aatatcttta
     1321 acaccaccca ttctttttgc tttggctgca ttttcagcaa caacttgagt gattttatca
     1381 ctaacaaatg ttttttcttc atcgctttta gcttcgctaa gatcaatgta actcataaca
     1441 gatttagtat caccactgta aagatctttt gtaaaatttt tagctaaatc ttcaggattt
     1501 gaagaacctc aagccactaa aaaaaggcaa ctaaagccaa gaaagaaagt ttaaaaaatt
     1561 tcattttttt cttttgatag tataaattaa aatattcata attatagcaa aataattcaa
     1621 aattattttt ttattcttgt ttataatggt tacattagaa aatatatttt tttaaaaagc
     1681 tataaattta aacacatata agttggagtt aaaatatcct attttattat cgaataaaaa
     1741 tgatacaaaa ggataggata tggaaatttt tttagcttta ttgggttttt tctcgttagg
     1801 attgatagtt tggcttttgc taaaagatta tactactcca gcattagctt ttataagtgt
     1861 aagtattagt gtagcttgta ttttacttat tcttgaacgg cttggttttg gcgtgggtgt
     1921 agctttaggg gttaaaggag gtgtttttga tattaaaaca ttggttgttt ttattaaaga
     1981 tggagtcaaa agcgtaacgg atacggcagc tttgtttgtt ttttctatac tcttttttag
     2041 tgttttaaat gcaagtggtt tttttactaa aattttaaat gcatttttat caaaaatgaa
     2101 agctaatgta tatcaagttt gcattcttac tgtttttatt gctgctgctg tgcatttaga
     2161 tggttcaggt gcttctactt ttcttattgt aatacctgca ttattaccta tttatgagcg
     2221 tttaggtata agaaagactt caatgttatt gattattact tcggctatgg gggttatgaa
     2281 tgttattcct tggggtggtc ctactttaag agcggctact aatataggaa tggatgcaaa
     2341 tttgctttgg caccatatta tacctattca gattgtaggt ttggtattat cccttctttt
     2401 ggcaatttgg attgctaaga tagaaataaa aagaggtgca ggcgcaggta acttgtctgg
     2461 aataaattta aatatagaaa aaagcgaaca ccataatgaa aaatggtttt ggttaaattt
     2521 acttgtagct attggagtta ttgggctttt aattagcggt attattccta gttatatttg
     2581 ctttatgata ggacttgcaa taattttacc gcttaattat cctaatttaa aaacagctaa
     2641 aaaagtttta gatcgtgcaa gtgctggtgc aatgcttatg tatattactt taattggtgc
     2701 tgggatatta ataggcgtat ttgataaaag tggtattatg gagaaaatgg gtgttttgat
     2761 tttaaatttt gttccagatt atttaggcgc ttatattcct ttgatggtag ggatattggc
     2821 tgttccaatg gcaattattt tttgtacaga ttcttatttt tatggagtga tgcctatagt
     2881 tttgagtgta actaaggctt ttggcgctga acctttgact atagctatta tcatggtgat
     2941 agcaagaaat tgtgcgacat ttatttctcc tgttgtgcct gcaactttgc taggttgtgg
     3001 tttagcagag gttaatatta aagatcatat caaaagaagc tttttttata tatgaggtat
     3061 aagtattatt tgcttgattt ttgctgaggt agttgggata atataattaa aataaaagaa
     3121 cttttgattt ttcaatgatt ggttcattgt tttatgatat ttttgagtca aaaatttata
     3181 aaaatataag cgtttttttg tattatttta ttttgcttta gagaaaaatt ataaatttaa
     3241 acttataaga atatttttta agttgaaagt aaattttaaa acggagaaat gatgtacaaa
     3301 aaacaaaatt taccagaact taccttaagg ggtttgattt tgggaagtat tttaactatt
     3361 atttttacag cttcaaatgt atatttgggg ttaaaagtgg gacttacttt ttcatcatca
     3421 attccagctg tggtcatctc catggcggtt ttgagtcttt tatggttcaa actcaagctt
     3481 cagcagcagg aactttatca tcagttattt ttgttatccc agggcttttt atgtgtgggt
     3541 attggagtga atttccactt tggcaaactt ttatgatatg tctttgtggt ggcggacttg
     3601 gagtgctttt tactatacca ttaagaagga ctatggtggt tgaaagcaag cttgcttatc
     3661 ctgaaggtag agccgcagct gaaattttaa aagtagccaa taaagatcag agtagtaaaa
     3721 aaggaaaaca aggcattaaa gaaatagcat taggctcttt tatagctgct atttttagtt
     3781 tgttaagcaa tggttttaaa ctcgctgcaa gtgagagtaa ttttgctttt atttggaata
     3841 aaatggcttt tggtttttct atgggatatt ctttggcact tttaggggca ggttatttag
     3901 ttggtttagc aggtgctata gctctttttg taggtatgtt tttagcttgg ggtattttta
     3961 ctccctatct ttcaaatttt gaattcgata gtacaaaaaa tgccgtagat ttagcttcta
     4021 gtgtatggag ttctaaagta aggcttatag gaacaggagc tattgctata gcagcgcttt
     4081 ggactttaat agaactttta aaacccgtta ttgagggtat taaagaaatt gttaaaaatg
     4141 ttaaaattac taatcaagaa aaaaatgaaa gaacaaatat agacctttct ttaaaaagta
     4201 tttttatact ttttgtttta atggttgtgg gtttatttat tactttttat agttttgttg
     4261 aagatgctaa cttaagtatt tattatcaaa tgctattttc atttgttgga actttagttt
     4321 ctgttttaat aggttttttt gttgcagcag cttgcggata tatggcagga cttgtaggat
     4381 cttcttctag tcctatttct ggaatcggac ttattggtgt tattatttct tctattgttt
     4441 ttttggtttt aggtgtggaa ctttttcaag atcctatgct ttctaaattt gcagtagcat
     4501 tagctatttt tactactagt gttattttag ctacagctgc tatttcgaat gataatttac
     4561 aagatttaaa gacaggacat ttagtcggag ctactccttg gaaacaacaa gttgctttac
     4621 ttgtaggctg tgtttttggt gctttggcta tagttcctgt tttaaatttg ctttatcaag
     4681 cctatggttt tgtcggagca atgccaagag aaggtatgga tgcttcatca gctttagcag
     4741 caccgcaagc aaatttaatg agcactatcg cccaaggaat ttttcatcac aatatagagt
     4801 ggggttatat ggcttttggt gtatttgtag gaattttaat gattattata gataaaattt
     4861 taaaaggaac acagaaaatg tctttgccgc ctttagccgt tggaataggt atttaccttc
     4921 cccctgctgt aaatatacct ttagttatag gcggaatttt aaaatatatt gtaatgcaac
     4981 acttgactaa aaaatatgca aaaaattctc ataaagaaga aaaacttgca agttgtgagc
     5041 aaagaggcac gctttttgct tcagggctta tagtgggtga aagtattttt ggggtaatta
     5101 tcgcaggaat tactgtattt tcagtaagta tgggtggtag tgaaaatcct ttagctttaa
     5161 atttagcaaa ttttcatgat agcgagcttt tcgcacttat cttttttgtg ggagttgtat
     5221 tatatttcat taagcgtatt gttaaaaaag atgcttaatt tttggggtta aaaccccatt
     5281 taatccattc tgatataatt tttcttttgc aattatcatt caaggattaa aatggaaaat
     5341 ttatatgctt taatacttgg aattatagaa ggtctgactg agtttttacc tatttcttca
     5401 acaggacata tgattttagg tacgactatt ttaggtatcg atatagatga gttttggaaa
     5461 agctttttga ttatcatcca gcttggttct attttggcgg tcatttttgt attttggcgt
     5521 aaattgtttc aagggcttga tatttggtta aaacttgcag ttggattttt tcctaccgga
     5581 gttatagggc tttttgtggc aaaatactta aatgctttat ttaatggttg ggttgtggtt
     5641 ggaatgctca tttttggcgg tgttgtgttt attcttatag aacttgcaca taaaaataaa
     5701 caatatcgta tcaattcttt agaagaaata agttttaaac aagctttttg cataggtatt
     5761 tttcaatctt tagccatgat tcctggtact tcaagaagtg gagcaagtat tattggtgga
     5821 cttttgctag aatttaatag aaaagttgcg gctgagttta gttttttgct tgccattcca
     5881 acgatgatta tcgctacagc ttatagcatt tataaagagc ctgagcttct tggcaatgca
     5941 aattctttaa ttcctttagg cataggtttt atcactgctt ttattgttgc agttttagtt
     6001 ataaaatttt tcttaaaatt tatttctaaa ttcgacttta tcccttttgg aatttatcgt
     6061 attattttag gatttgtttt cttttatttg tattatagtg ggattttaaa tgctggaagt
     6121 gaatttaagc tataaataaa tattaaattt attctaagat ttttttaaaa ataagctgaa
     6181 tttcaaaaat aattaagtct tagaaagtta aaattagaac tttataaaca ctcacagggt
     6241 aagtgagcga caaagggtta aaaatatgga aaaagaagtt attgcgtatt tggacaatga
     6301 gacaataatt gactctcaaa gtgtgaaaaa tacaaattta aaagaaattt attttgataa
     6361 ttctaaagaa agtttagaag taatccgtca ttcttgtgcg catttaatgg cacaggcgat
     6421 taagagtttg tatcctgaag ctaaattttt cgttggtcct gttatagaag atggatttta
     6481 ttatgatttt cgtgtggaaa gtaagattgg cgaagaagat ttggtaaaaa ttgaaaaaaa
     6541 gatgaaagaa cttgctgaag caaagattga aatttcaaaa tatgaaatca caaaaagcga
     6601 agctttggct aaatttcaaa atgatgattt aaaacaagaa gttttattgc gtattcctga
     6661 tagagctgta agtatttata aacaaggtga atttgaagat ttgtgtcgtg gtcctcatgt
     6721 gccaaatacg aaatttttac gcttttttaa actcactcgt gttgcaggag cgtatttggg
     6781 tggcgatgaa aaaagagaaa tgcttactcg aatttatgga actgcttttg cagataagga
     6841 aagtttaaaa gagtatttaa ccattattga agaagctaaa aaacgcgatc atagaaagct
     6901 tggaacagag cttaagcttt ttacttttga tgatgagatc ggaggaggtc ttcctatttg
     6961 gttgagtaat ggtgcaagac ttagatctaa acttgaacat atgctttata agatccatcg
     7021 tttacgtggt tatgagcctg tgcgtgggcc tgaactttta aaagcagatg catggaaaat
     7081 cagtgggcat tatgcaaact ataaagaaaa tatgtatttt acacaaattg atgaacaaga
     7141 atatggcatt aagcctatga actgtgtggg acatattaaa atttatcaaa gtgatgtaag
     7201 aagttatcgt gatttgcctt tgaaattttt tgaatacggc gtggtacatc gtcatgaaaa
     7261 aagtggcgtt ttgcatggac tttttagagt gagagaattc actcaagatg atgcacatat
     7321 tttttgtatg ccaagtcaga ttaaagagca ggttttagaa attttagctt ttgtggataa
     7381 tttgatgaaa ttatttgatt ttagctatga aatggaaatt tcaactaaac ctgaaaaagc
     7441 cataggtgat gatgaaattt gggaaatagc gactaaggct ttaaaagaag ctttagatga
     7501 acaaggttta aaatacggta ttgatgaagg tggcggggct ttttatgggc caaagattga
     7561 tattaaaatc accgatgctt taaaaagaaa gtggcaatgc ggaaccatac aagtagattt
     7621 taacctgcca agtcgtttta aacttgaata cactgatagt gataatgaaa aaaaacaacc
     7681 tgtaatgttg catcgtgcga ttttaggttc ttttgaaaga tttataggaa ttttaaccga
     7741 gcattgtgcg ggtgagtttc cattttttat cgcaccaact gcggtgggta tagtgccaat
     7801 aggcgaagca catattgctt acgcaaaaga aattcaaaaa gaattattag agcttaatat
     7861 cgatagcgag gtgtatgaaa aaaatgagag cttaagtaaa aaaattcgta tcgctgaaaa
     7921 gcaaaaatta cctatgattt tagttttagg cgatgatgag gtggcaaagc gtagcgttgc
     7981 tttaagagat agaagagcta aagaacaaaa aaatcttagc ttggacgaat ttattaaatt
     8041 agttaaggag aaaatgagtg aggtacactt ttgagtaaag aaaaagaagt attgctcaat
     8101 gaagaaataa gagcggatga aatcagatgt gttggcgatg atggcaaagt ttatggtatt
     8161 atcagtagtg atgaagcttt agaaattgca aatcgtttag gacttgatct tgtaatgata
     8221 gctgcagatg ctaagccacc tgtttgcaag atcatggact atggtaaatt ccgttatcaa
     8281 caagagaaaa aacaaaaaga agcaaagaaa aaacaaaaag tgattgatat aaaagaaatc
     8341 aaactttctg taaaaattgc tcaaaatgat attaattaca aggtaaaaca tgctttagaa
     8401 tttttagaac aaggtaagca tgtgagattt cgtgtgttct taaaaggacg tgaaatggca
     8461 actcctgaag caggtgtagc tttgcttgaa aaaatttgga ctatgataga aaatgaagct
     8521 aatcgtgaca aagagccaaa ttttgaaggt cgttatgtaa atatgcttgt aactccaaaa
     8581 aaagcttaat ccacttttgt ggataaagct tttaaaggtt ttaaattttg aaagaaaatc
     8641 cttctttttt aaaagagcaa attataactt atcttggaaa taaaagagca cttttaagtt
     8701 ttttaaataa tggctttaag gtagctaaaa aagaacttgg taaagataaa tttagttttt
     8761 gtgatatatt tagtggctca ggtgttgtaa gtcgttttgc aaaagcacac tcaaattata
     8821 ttttagccaa tgatttagaa gattattcaa aactcatcaa tgagtgttat cttgctaata
     8881 aagacaaaga tttacttcaa aatataaaaa agtattataa aaatttaatc caaaatttag
     8941 attttcaaaa aggttttatc agtgagcttt atgctccaaa agatgatgat gatattaaaa
     9001 aaaatgaaag ggttttttat acttttaaaa atgctttata tcttgatact ataaggcaaa
     9061 aaatcgaaaa tgaaattcca aaagaattga ggcatttctt tatagctcct ttgatttatg
     9121 aagccagtgt tcattcaaat actagcggag tttttaaagg tttttataag ggtaaggatg
     9181 gcatcggaaa atttggtggc gaaggacaaa atgcacttaa acgcattaaa ggagaaatag
     9241 agcttaaaat gcctattttt tcaaattttt cttgtgaatt tgaagtgatg caaaaggatg
     9301 caaacatgct tgcaaaagaa cttgattttt ttgatgtagt gtatcttgac cccccttata
     9361 atcagcaccc ttatagttct aattatttta tgctaaattt aattgcaaat tataaaaaac
     9421 ctgaagaaat ttctaaaatc agtggcattc caaaggattg gaaccgcagt acttttaata
     9481 agtcaaaatt tgcccaagat gctttatttg aacttattaa tgatttaaaa gcaagagtga
     9541 ttttactttc ttataattgt gaaggttttg taaaaaaaga aattttttta aagcgcttaa
     9601 gcactcttgg aaaatgccgg attttagagc aaaaatataa tacttttaga gcttctcgca
     9661 atcttaaaaa tcgcaatatc catcttcatg agcaacttta tattttagtt aaaaattagt
     9721 ttttcgtgct aaaattgcac ttaaaaatga ggagggattt atgaaactaa aattatcttt
     9781 ttgtacatta atggcatttg gtttttctaa ctatcttttt gcttcagcta ttgatccaaa
     9841 gttattttca agaatatctt gattttgcca gtaataaagg caaatttcaa gtaggtcaaa
     9901 ttggctttta aattttagca aaaaatccta gtcaaaatat ctcttttaat gtgcctatga
     9961 ttgatttttc tacttcaaat cgtggaggaa aattccaagg agaatttacc aatataggac
    10021 aatcttatat agtcagcgct tctcatatga gtacaagttt aaatactggg aagtaaataa
    10081 agactatgtg aaacaaggta gtgttttaca ctttggaggg gtagcaaata gaatcgtaag
    10141 ctcaagtgat aattttactt ataaaaaaga aaatgtggat tttgctgttt taaaaatgag
    10201 taagattagt ctcaataaaa gtgcaaattt gagtaaagat ttaaatctta ttgaaaaaat
    10261 tctggcgatg gtggagatat ttatgaatac aaggatccat tttgggatag ttgtcaaagt
    10321 ggaaaatgtg attattcaaa aggtaaaggc aagctttttg atagttcggg ttatgagtac
    10381 tttgcaagag agggaagtgg tattgtagct ttaggttttg aagatacaaa taaagtaccc
    10441 attaagattt ttgattctaa tgaaatcaat ttaggaggtt ttgtcggttt aactcctaaa
    10501 aatactgaag ataagcgttt taagttgcaa tttcttaatt ataccaatga taaaagaaat
    10561 ccttttacaa gttcttcaat atccggggat tctggaagta gagtttatgt ttatgataag
    10621 atggataaaa aatggtattt agtaggtgta gtaagtacga gtaattgtaa tgtccatttt
    10681 actatggata tacttgtttg caggttgatt atgctttgat caatcaagca aagatcaatg
    10741 aattttaaaa tgctcataaa gtagtcatag gatctggaac ttatacactt agtagcgatg
    10801 gtttgatgaa agatggtaaa aaaatagaaa atgtaagttt gatttctaag actaatgtgg
    10861 gttatgtaag ctataaaaat tcttttgatg ataaaataat tgtgataaga gaattgaaga
    10921 aatgcaaaat agcaaggatt tgtatttttc tcaaaatgga agtataaatt taaatagcga
    10981 tgtggattta ggcgctagtg ttttaaattt gataaaaatt caaattggca aataacaggc
    11041 gataaatggc ttatacatgg cggaatttat gctgataagg gttcaaggta gaatataatg
    11101 ttaaaaccaa aaaagatgat tttctttaat aaaatgggtg aaggagagct tgttgtcaaa
    11161 agtcaaagtg tggatacagg acttagaatg ggtgaggacc aaggtaagtc ttgagggtga
    11221 aggtttaagt tttagcgaaa tttatatgaa tggcagaact ttggatttat caggcttaac
    11281 attaaatttt gatcaaatta aaactgactc taataatgtt tttatcacaa gttcttaatc
    11341 aggaatacat ttaaatttag aaaacaagca agattatctt tatcatggca atatcttttc
    11401 agatgaagct gtaacaatga gtgccaatac agacaaagct ttgatttttg atggtaatat
    11461 ttacaataaa gaaggtgttt ttaggacaga aaatgccaag ttaaattttc aaggacatgc
    11521 tagaatacac gcttatgtaa gcaaagaaca agctaaaaaa cttcaagaac atggtttaag
    11581 tgctttaact aagcctgtaa gttttacaca agaagattgg gaagataggg tttttgtttt
    11641 aaaagagctt aatttagaaa aaaagcgagt tttatttagg gcgtaatgta agcttaaaag
    11701 tagaaaacct taatgctaaa aattccaaaa tagagcttgg aagtaaaaat ttgtggatcg
    11761 atgaaaaaga tggggaaaat attattgata agactgatga ttattcttat ggagatgttg
    11821 tataaacagg agttggcaaa gaaatggctt ttgagcaaaa gctttaaaat acccaaaatg
    11881 ctaagataga aaaggtttat tttagtgtaa atttaaatct tgatcattct gatgttactt
    11941 tgcaaaacac attttttagt ggtaatatca aaggtatcaa tgatacgcaa aaaaaatctt
    12001 gcgattaaag attctttgct tgagtctcat atataaatga gcaatcttca agtagaaaaa
    12061 agtgctattt ataggaaagt tgatgcaaaa aaattaagtg caaataatac aatatttaaa
    12121 atcaatgcgg attttgaaaa ttctaaatca gattatatta attctaagga aagcacacaa
    12181 ggagtaaata atactttagt attaattttt cttaataatc ctagtaaaaa gcgggtttaa
    12241 atatcttact agctcattta aaagatgaaa ataaacattt aacaaaggaa ttttttacta
    12301 tgccaaatgt gagcaaggtt ttagtacgta taccccaaat gttgtttttt ctcataatga
    12361 ggaaaatttt gcccagagtg gaatttagaa aaaattgatt ctaagattaa agatgaatat
    12421 ttttttacta atgataatac tcaagctatt gtaaaaacta aatctatact tgctcaagct
    12481 attttaggct ccatgatagg agtggaataa tatgcataaa agaatggggg aattacgcaa
    12541 taatccttat gaaagtggtg tatggttaag aacttttgga tggggtacga gtgatgagta
    12601 taatagtgga aaatactttg aaattcaaag cggacatgat aaattaaacg agtattcgaa
    12661 tttcgagctt tacagtggag taaggttttt atagtgattt tgttttagat atatttatta
    12721 tcaaaatgaa ataaatgcaa attttattcc aggaaatcaa ggtagattag atgataatga
    12781 tggttcgcat aatattatct taagtgctga gttaggttat agaaaagctt atgataaatt
    12841 ttatcttgag ccgatttgga atttatcagt ggttatgtag gagctatgga tctaaaagga
    12901 gatattgcta gtttaaaacg attttcttat attcctttag tcgtaaaaac agcatttttc
    12961 ataggaagtc aaaattaaaa tttaaatttt agaacaggac ttggtttgta tgcggatccg
    13021 attaaagcag gagatcaaat tttagaggat caagcaagtc agagaagata tgaaggaaaa
    13081 aagatcaaag aatgtttata aatttaggaa atgattataa gcttaacgat aaaacacgct
    13141 ttaattttga atttgaaaag acattttttg gcgatttaaa tgtagattgg agtgcaaatg
    13201 ctaatttaag atatagtttt taaataaaaa ataatttaaa aattgtattt ttattttaag
    13261 cttttttgtt tataatactt gcttttacat ttaaaggata aagatgaaaa taaaagttgg
    13321 gattttagga gcgagtggtt atgcgggaaa tgaacttgtt cgcattttgc ttaatcatcc
    13381 caaggttgaa atttcttatt tgggttcgag ttctagcgtg gggcaaaatt atcaagatct
    13441 ttatcctaac acccctttaa atttatgttt tgaaaataaa aatttagatg aacttgaact
    13501 tgatcttttg tttttggcta ctccgcataa atttagtgct aaacttttaa atgagaattt
    13561 attaaaaaag atgaaaatca ttgatttaag tgcggatttt cgtcttaaaa atcctaaaga
    13621 ttatgagctt tggtataaat tcactcatcc taatcaagag cttttgcaaa atgcggttta
    13681 tggactttgt gagctttata aagaagagat aaaaaaagca agtttagtgg caaatccagg
    13741 ttgttatacc acttgttcta tcttaagtct ttatccgctt tttaaagaaa agatcattga
    13801 ttttagctca gttattattg atgcaaaaag tggagtaagt ggagcaggaa gaagtgcaaa
    13861 ggtggaaaat cttttttgtg aagttaatga aaatatcaaa gcttataatt tagctttgca
    13921 tcgccatact cctgaaattg aagagcattt aagctatgcg gccaaagaga aaatcactct
    13981 acaatttacc cctcatcttg tgcctatgca aagaggaatt ttaatcagtg cttatgcaaa
    14041 tttaaaagag gacttgcaag aacaagatat acgcgatatt tatacaaaat actatcaaaa
    14101 caataaattc ataaggcttt taccgccgca gtcgcttccg cagactcggt gggttaaatc
    14161 aagcaatttt gcggatataa attttagtgt agatcaacgc acaaagcgtg ttattgtgct
    14221 tggtgctatt gataatttaa tcaaaggtgc agcaggacaa gctgttcaaa atatgaattt
    14281 aatgtttgat tttgatgaag atgaaggact taaattcttt gcaaatttgt aaaggataaa
    14341 aatgttaata cgagctatgc aaaaaagcga ttatgaagcc gtttataagc tttggtgtga
    14401 gataaaaggc tttgggataa gaagcattga tgatagcaaa gaaaatatag aaaatttttt
    14461 agatagaaac ccaaatctta gcgttgtagc agtgattgat gaagaaattg taggaagtat
    14521 actttgcggg catgatggac gcacaggagg attttatcat gtatgtgtac ataaagatca
    14581 tagaaaaaag ggcatagcgc acgagatggc aaaattttgt cttgaggctt taaaagctca
    14641 aaagattaat aaaatcgcct taatcgcttt taaaaacaat gatttaggca atgagttttg
    14701 gaaacattat ggttttactt taagagagga tgcgaattat tacgatcttt ctttaaatga
    14761 gtataatcaa actagcttta atgcttaagg aatgatcatg caaaaatatt tagaaaaagc
    14821 taatgtctta atcgaagctt tgccttatat acgcaaattt aattctaaga ttatacttat
    14881 aaaatacggc ggatcagcta tggaaaatga agagctaaag cattgtgtga tgcaagatat
    14941 agctctttta aaactcgtgg gtttaaagcc tattattgta catggtgggg gaaaagatat
    15001 ttctgctatg tgtgaaaaat taggcgtaaa gagtgagttt aaaaacggtc ttagggttag
    15061 tgataaagcc actattgaag tagccagcat ggttttaaat catatcaata aaaatttagt
    15121 ccatagtttg caaaatttag gagttaaagc catagggctt tgtggtaaag atggcgcgct
    15181 tttagaatgt gtgaaaaaag atgaaaattt agcttttgtt ggcacgatac aaaaggtaaa
    15241 ttcgaaaatt ttagaagagc ttttggaaaa agatttttta cctatcattg ctcctattgg
    15301 catggatgag aattttaata cttataatat caacgctgat gacgcagctt gtgcgatcgc
    15361 taaggcttta agggctgaaa aacttgcttt tttaactgat actgcagggc tttatgagga
    15421 ttttaatgat aaaaattctt taatttctaa aatcagcctt gaacaggcta aaattttagc
    15481 tcctaaaata gaaggtggta tgcatgtaaa attaaaatct tgcattgatg cttgtgaaaa
    15541 tggagtcaaa aaggtacata ttttagatgg gcgtgtgaaa cattctttgt tgcttgagtt
    15601 ttttaccgat gaaggtatag gcactttggt gggttaaagg atgaaaatgg attataaaga
    15661 acaaagtcat attatcccta cctataagcg ttttgatata gttttagaaa aagggcaggg
    15721 ggtttatctt tttgacgata aggctaaaaa atatcttgat ttttcaagtg gcataggtgt
    15781 ttgtgcttta ggatataatc atgctaaatt taatgctaaa atcaaagcgc aagtggataa
    15841 gcttttgcat actagcaatt tatattataa tgaaaatata gctgctgcag ctaaaaattt
    15901 agccaaagct agtgctttag agcgtgtttt ttttacaaat tctggtacag aaagtataga
    15961 aggagcgatg aaaacagcta gaaaatacgc ctttaacaaa ggtgttaagg gtggacaatt
    16021 tatcgctttt aagcattctt ttcatgggcg tactttaggg gctttatcgc ttactgctaa
    16081 tgaaaaatat caaaagcctt ttaaaccttt aatttcaggg gttaaatttg caaaatataa
    16141 tgatatttca agcgttgaaa aactggtgaa tgaaaaaact tgtgccatta tcttagaaag
    16201 cgtgcaagga gaaggtggaa taaatcctgc aaataaagat ttttacaaag ccttaagaaa
    16261 gctttgcgat gaaaaagata tattattaat cgctgatgaa attcaatgtg gcatgggtag
    16321 aagtggaaaa ttttttgcct atgagcacgc acaaattttg cctgatatca tgacttcagc
    16381 taaggcctta ggttgtgggc ttagtgtggg tgcttttgta ataaatcaaa aggtagcaag
    16441 caattcttta gaagcaggtg atcatggtag tacttatggt ggaaatcctt tagtttgtgc
    16501 aggagtgaat gcggtttttg aaatttttaa agaagaaaaa attttagaaa atgtcaataa
    16561 actcacgcct tatttagagc aaagtttaga tgagttgata aatgaatttg atttttgtaa
    16621 aaaacgcaaa ggcttagggt ttatgcaagg gctgagtctt gataaaagtg taaaagtagc
    16681 taaggtcatt caaaaatgtc aagaaaatgc acttttatta ataagttgcg gggagaatga
    16741 tttgagattt ttacctcctt tgattttaca aaaagaacat attgatgaaa tgagtgaaaa
    16801 gttaagaaag gctctaaaga gtttttaata aattttgtaa aaaaagttta ttctttccca
    16861 tctactatag gcacaaataa acattcttct aaaatttctt tttgtaaatt tgtgccattt
    16921 tttctaaggc gtgtgatgaa ttgtttgcca ttgtgtaaaa taggagcgac taaaataccg
    16981 tcatcgctta attgatcaag taaaatttca ggaatttgtg tcgcataagc agaaaataaa
    17041 atcctatcat aaggagcata atttttccag ccattttgtc catcatcaaa ttttacattg
    17101 atattaaaaa gttctaattc tctgaaagtt tgagcggctt ttttggctaa attttctatg
    17161 cgttctatgg taaaaacacg ccttatgact ttgcttaaaa tcgcagcttg atagccactt
    17221 ccacaaccta tctctaaaat actatcagca tttttaaaat ctaaagccat agtcatttta
    17281 gctacagtta aaggtgaact aatccattga gaatttgcta aaggcaaagc atcaaggcga
    17341 taagcatggg cttttaaagg agaaaaaatt tcacgtggaa tttgacaaaa agcattaaaa
    17401 agttcttcat tgataaaaac tttttgtgca atttcttcag ccatattttg acatcttttt
    17461 tgttcaaatg cgttcattac ttctcctata aatttaaata aaaattgtaa ctaaaaaagt
    17521 tgaaatagag ttaaacttag ctatacttaa ataaaaagga aaaaaatgct tataaaattt
    17581 aaaaatcata gtcccaaact aggtcaaaat gtttttgttg cagagggcgc taaaatcata
    17641 ggagaaatag aaataggaga tgaaagtagt atttggttta attgtgtttt aagagccgat
    17701 gttaatttta taaaaattgg caaaagaacc aatattcaag atcttagcac agttcatgtt
    17761 tggcataggg aatttgatga aaaaggaaag ttaaaagatg ctggttttcc tacaataata
    17821 ggagatgatg taactatagg acataattgc gttatccatg cttgtgtgat aaaaaatcgt
    17881 gttttaatcg gaatgaatgc tgttatcatg gataatgctt tgatagaaga agatagcata
    17941 gtgggtgctg gaagcgttgt aacaaagggt aaaaaatttc cgccacgctc tttgatactt
    18001 ggaaatcctg caaaatttgt gcgtgaatta aacgatgaag aagtcagctt tctaaaacaa
    18061 tccgctttaa attatgtgga ttttaaaaac gagtttttaa aagatcttca gtgatatttt
    18121 gaagtttagg cgagagtttt acttcaaatt tcacaaaacg atcaagatct aaaaaactct
    18181 catcgagttt tgaaatttgc tcttttgtat aatcttgaat agtatttaaa gatgactttt
    18241 taagaagtct tttttctttg tagactaatt ctaaaagttc tttgcgttct aaattttcat
    18301 cttgatttgg gttttcgtca aaaacataaa gttcatcaaa aaggattttt tgcgtgtttt
    18361 tatcataaac tctaaaaagc tttttaaaat gaggtagggt tgatttttcg ttattttcgc
    18421 tgattttgat tttaggtttt atgccttgat cttctaaggc tgcgagttta taaacgcaac
    18481 taaaaatagg gtcacttgaa gcagtgatca atctttcacc tacaccaaag atatcaatag
    18541 gtgcattttg ttctttgagt tttttaatgc tccattcatc aagtgcgtta gaaactatga
    18601 ttttacattt ttgaagtcct gcttgatcaa gctcttgtct gattttcaaa ctcaactcaa
    18661 gtaaatttcc agaatctatt ctcacgccgc cttcttgaat accaaattct ttaaaaactt
    18721 taatcgcatt tttaagtccg ctatttagac aatcataagt atcaatcaaa aaaacaggat
    18781 tttttggata aattttcaca taagctttaa aagcttcaag ttcattttca aacatttgca
    18841 cccaagaatg tgccatagtt ccattgatag ggatattata aatttttcct gctaaagtac
    18901 aagcacttcc tatgcaacct cctataaaag ctgctcttgc tccttttaag gctgcttcac
    18961 ttccttgtgc tctgcgtgaa ccaaattcta aaattttact gtctttagct gcacgcacga
    19021 tacgattggt tttggtagca ataaggcttt ggtggtttaa acttaaaagt aaaaaagttt
    19081 ctaaaagctg tgcttctatg gttgtagctt taacgcaaag taaaggttcg tttggaaaaa
    19141 tcacttctcc ttcacgcata gcataaattt cacccttaaa tttaaagtta gctaaaaaat
    19201 ctaaaaattt tgtatcaaaa ataccttgtt ttcttaaaaa ttctatatct tctgtatcaa
    19261 aactcaaatt ttcaacaaag tctaaaatat cttcaagacc tgcaaaaata gcaaaagaac
    19321 ctgaatctgg aatttttcta aaaaatatat caaaataaca aatttgatct tttttattgt
    19381 ttttgaaata gccttgagac attgtaaatt cataaaaatc acaaagtaag gctaaagaag
    19441 ttttagaagt catcaaagct tatactaccc ttagaataat tcgttacttt actttcaaag
    19501 aaattgctct tttgatcgtt aaattttgaa aaatcatcta cccatttaat aggatgtttt
    19561 gcattatata acttatctaa attgatcgca cttaatcttt gatctacaag ataatggata
    19621 tattcttcta tgatatcatc agtaaagccc atgatttgat tttgagtgat gtatttaccc
    19681 catttgatct caagatctcc agctttttta aacatatcat aaattttatt gatattttca
    19741 tcatggaata aatcaggtct ttctttgcgt actgaattga tcatattttg aaataataaa
    19801 agatgtgtga tttcatctct ttggataaag cggatcattt gtgctgaacc tagcattttt
    19861 cctgcacgtg caagtgcgta aatagcagta aaaccactat aaaaatatac tccttctaaa
    19921 atttgatttg ctaccatagc caaaagaagt ttattatcat ctacatcgcc tgctaattct
    19981 tcataaatgc ttgaaataaa gtcatttttt tcacgcaaag tttcatcatg cttttccatt
    20041 tcataaatca aatctgtatt atcgcaaatc gcttctacca taacagcgta agattttgaa
    20101 tggtttgcct cttcataagc ttggcgtgcc aaaaccgcat tgatttcagg agctgtgatg
    20161 taagggttga tattatctgc taaattattg gtttgaaaac tatccataga aataagctga
    20221 ctccaaacca aatcatacat tcttttttca cctacagtta aattacagcg ataatcaagt
    20281 gcatctttag ttgtatccac ttcttttgga aaccaagtat ttgcctccat taaatcccaa
    20341 agttttaaag cccaggtata ttttgcctta gtgaaattta aaattccatg tgggttacca
    20401 tcaaaaattt tacgatctcc tagggtttcg tttgagtttg gattgtaaat tctttttctt
    20461 tgcattttta acctttcttt atgcttttag tagctataca actttgagtt aaaatatcgt
    20521 gtaaatttaa acgatctttt cttacaaaac tgacaaataa accaaagagt aagccaaaac
    20581 ttataataaa tatcacatat cttagtaaaa ttctaagaaa acttagtttc tttcccgttt
    20641 ttatatcaat aagatataaa tcatatgctt taagacctgg gctttgtgcc ttttttgtta
    20701 aaaaaatagc ttgaatcaag ccaaataaaa aagtacataa agttgtgata aaatggttgt
    20761 ttaaaaaagc ttctttagag cctaatagaa aataaaataa atacaaaata ggaatataaa
    20821 taagaaaaat atctataagc aaagctctaa atcttagcca tctagagcta atttttgctt
    20881 tagttttcat ttaatttcca cgacttcctg gttttatagc tttactccct tttttacaaa
    20941 gtggacaatt tgtttcatcg taaatttcaa attcaaaatt tcctagagta aagagtggta
    21001 aattttcagg taatttcgca ttatcttttc ttggagattt taaattttct actgcacaaa
    21061 aaccacgatt tgccaatgct gcaaaaccta caacaatgcc acctaaactt tcaatgattt
    21121 ttgcactctc taaagcacta ccacctgtag taatgatatc ttcacaaatt ataaattttt
    21181 cactcttttt tacctcaaaa ccacgtctta aagtcatttc tttatttact ctttcggtaa
    21241 agataaaacg tttactacaa gctcttgcaa gctcataacc tgctaaaatt ccacctaaag
    21301 caggagaaca aatgctatca aattctatct tatagcttgt aataatcttt gcaagttcat
    21361 cacaaagttt tgctgctaat tttggatcct ctaaaacttt tgcactttga agataaaatt
    21421 gcgaatgttt acctgaactt agtaaaaaat gcccttctaa ataagcacca caatctttat
    21481 aaatttgctc taaattcatc gttaaacctt taaaagttca ctttctttgt tttttacact
    21541 ctcatcaatt tttgttgtat aggtgtcggt aagtttttgc acttcatcat aagctttttt
    21601 tgcttcatct tcgcttattg ccttatcttt ttctagtttt ttaactgcat cgttggcatc
    21661 tttgcgtata tttcttatag aaacttttgc cttttcaccc atagctttag cttgttttac
    21721 attttcttct ctttgctctc tagtcatcgg agggaaaaat aattttacac tttcgccgtc
    21781 attgtttgga tttacaccga tatttgtagc tgcaatagcg ctttctatgg tttttagtaa
    21841 aggtttttcc caaggagtga tgctaatagt tgaagcatca cttgctaaaa cagttgctac
    21901 ttgatttaaa ggagtttgag ttccataata atccactgta atatgatcta aaatatgggt
    21961 attaactttt ccagttctta aagtggtgaa gtcttttttt aaggcttcta aagatttttc
    22021 actttgggtt ttttgtttgt taaaaatttc atttagcatt atcatttcct ttaattattt
    22081 acttgaatta acatcgcttg gaagttgtgg tgcacttgga gcgatagaat ttgtgttggg
    22141 ggtagcaggc acaataggag cacttggaat agtagtattg ttgttttcta ctttaatttt
    22201 ctctgctaga gagtctttgc tagctttatt gtataaataa ccaagaccaa tagtatttgc
    22261 aataagtaaa attcccataa caaaggtaaa ttttgccaaa aatccagctg gtcctttggc
    22321 gccaaataaa ctttcattgc ttccactata agttccaagt cctatacttg aacttttttg
    22381 aagtaaaact gctatacaaa taactacaac gatgataaat tgtaaaatga ttaaaagagt
    22441 gatcattgaa aattcctaaa agttaatttt taaatgatta ttttagctaa ataaaacttg
    22501 aaaagttttg aaacttgaaa agtttttgtg agaaaaatcc cacaaaaatt tatctgctat
    22561 tgaagcttct taagatatta agtaaagata cgaaaagatt aacaaaatca agataaagtg
    22621 ctactgcacc ttcgattgga gtttcataat ttccgcggat aatattttgc gtatcataaa
    22681 gaatgtaaaa tgaaaataat attgcagcta ctgctgaaat agctagatta actatactgc
    22741 tttggaagaa aaggtttagt aaagatgctg ctacaataac gattaatact ataaataaag
    22801 ctttacccat aacggtaaaa tctttttttg tattcatagc aaatacacta agtcctgcaa
    22861 aagcaactgt tgttaaagca aaagcttgag cgatgataat tcctccagct ggtagagcta
    22921 acactgaaat aagcaaaggt gtaagcgtta aacctgagca gaaagtaaaa ccaaaaagca
    22981 aaacaagatt taatggagcc tctctttttt tccattgcaa agcaaataaa agtccgattt
    23041 caacagcaaa aaggatccaa aaagttactt gtgattgtat aaaaaatgat gctaaagcaa
    23101 aaattcctac atacgcacct actgttgcag ctaataatga agcagcaaaa agttgataag
    23161 tttgtttaat aaaaatactt aattcgcttg agcgtgtatt ttcaaattct tttgatcttg
    23221 agtagtctct atcataaaga ctcataaaat tctccttgca aaattgttag attttttaaa
    23281 atcttgagcg aaatctaaca tattagacta aataaaaagt taatttatat aatatcttta
    23341 tgattaaatg aaatctttgc tgaaattttg ttataatttc aagattttag tttcaggttg
    23401 gttttatgga aaatcttatt agtggtgcga ttaagtttat gcaagaagac tttaaggagc
    23461 atgaagaact ttttgaaagt ctaaaaaata agcaaaatcc ccatactctt tttataggtt
    23521 gttctgattc tagagtaatt ccaaatttga tcaccaatac gggtccaggt gagctttttg
    23581 taatacgaaa tattgcaaat atagttccac cttatcgcat tggggaagat tacttagcga
    23641 caacttcagc aatagagtat gctttaaatt cattgcatat taaaaatatc gtcgtttgtg
    23701 gccatagtaa ttgtggaggt tgtaatgctc tttattattc tgatgaagag ttaaataaaa
    23761 ttcctaatgt gaaaaaatgg cttactatgt tagatccgat aaaaaaagat gtaatgattt
    23821 ttgcaagaga cgatttggct atgcgttcat ggcttacaga aaaattaaat ttagtaaatt
    23881 ctttgcaaaa tatacttact tatccaggcg tgcaagaagc tttagatgaa ggaaaaatag
    23941 aagtacatgc ttggtattat attatagaga caggtgaaat ttatgagtat gattttaaag
    24001 caaaaatttt tactttaata caggatagga aagttcaatg aaaaaaatta tttttagttt
    24061 atgttttttt attttatacc ttggagcaca agaatttaaa tttattgatg caaatatgag
    24121 taaagaggat gaaggaattt atgctttagt tgaaaaatat gttgatctta acaatcaaat
    24181 taaagaattt aagaaaaaca atgatgaaaa ttcaagcact tttaatggta ttttaagtga
    24241 atttgaaaaa gacaaaaaga ctattttagc aaaaataccc gatatgatag taggacaaaa
    24301 gattaatgaa gaggcagtgg ctagattttt aaaagcaaaa gaaaaattac tagatgttca
    24361 aaaaaagaat attaataagc cttatattta tacagatgcc actcttaatc tagtttattt
    24421 taatattgtg gaaagttttt attcttcttt gtttgaagtg gaaaaacttt ttaaaaatac
    24481 agcaagcagt gaagatttga ttgctactgt tgataaggca atggaaaatt tacaaaattc
    24541 ttctaatgtt aatttagata gttttaaaag caaaattaca aattcagaag aattagaaaa
    24601 aattacccta aaagaaagat atatcagtaa tgctgtagat tcttattctg aaattcttaa
    24661 gtatttacgc tcaaatgcag atttgcttga aagtaattat attttttcat tactcgagct
    24721 tcaagtttgg atagatcgta taaatgaggc aattggggta agttttgtta atatcggaaa
    24781 aatagtaatt tctgctttgg ttttagtatt ttttatatct ttaagacgtt tttttgcaaa
    24841 tatagtatat tttttccttg ttcagttttt ttatagaaat aaaaatgatg tagatgatat
    24901 taaagtcatt tttattgaga atattaaaaa acccgtaggc ttcttgttga ttgtctatgc
    24961 tatttctctt tgtcttacta tagcaactta tcctgcacct ttgagtgtaa atttaagtaa
    25021 tttttttcat atagtttatg cagttttaat tgcatggctt attttaagaa tgcttgatgg
    25081 ttatggcgtg gtattggttt ctaaacttgc tcaaaaaagt ggaaaaaaag aagttgtaaa
    25141 tttaattatt aaaattttat attttgtcat tattattata gctttattat atattcttgc
    25201 tcaacttggt tttaatattt cggctattat tgcatctttg ggaattggtg gtttagctgt
    25261 tgctttagcg gcgaaagata tcattgcaaa tttctttgct tctatactct tactttttga
    25321 taatagcttt aatcaaggag attgggtaga ggtttcaggc atagaaggaa ccgtggttga
    25381 aacaggactt agaaaaacta ctattagaac ttttgataat tgtcttgtat ttttaccaaa
    25441 ttcaactatt atgggagcta atatcaaaaa ttggagcaaa agacgcatgg gtcgccatgt
    25501 tagaatgtat ttgggtgttg gttatgatgc tactcctgaa aaactagaac aatgtgtaaa
    25561 agatctaaga gaatttttgc atacaagtga tttagtagct cacgatgagg atagcgcatt
    25621 aaaatatggc gatcatacaa caaaatatcg tcaaaatctt gtatctatta atgatttaga
    25681 aggctataaa aatgcttgtt atgtggcttt aagtgaattt gcagatagta gtattaatat
    25741 agagctttat ttttatatca aagaaatagg tggaaaagat tttagagaag ctagacaaag
    25801 tttaatgctt gagtttatgc gtataattga aaaaaatggt ttaacctttg ctttcccaag
    25861 tcgtagtatt tatatagaaa atttaccacc ccttgatttg caagcaaaag ctataaaata
    25921 gcaagatttt atcttgctat tttttaaacc ggcataacgc gtatatttgg acttaattct
    25981 tcttgtaaaa ttgtttcaat agcataaagt gttgcaccac ttccactaga acaaccacta
    26041 caagcaccaa gataacgaat ataaacatca attgctgcac cttcagcctt ttgtatatca
    26101 atcacttcca aatctccacc atcattatga agcatagggc gaatttcagc atctaaaaca
    26161 ctttcaactg cttttaattg tcccactacg gtcatttcat caaaagctac atcacttttc
    26221 attgtatttt tgagtttttc tctatctatt tcagctctag tttcagctaa aatatctaca
    26281 aggtaataat ctcttttttc atgtccgcct ggtttgatac aggatttaca aaaagcaccc
    26341 gctttagtat attgtgtgat ttcttctacg ctatgcaaat cattaagttt aatcacttct
    26401 ttaatagttc caagacttac cctagcgcac tcgcaaacta taatttgatc ttcaaaatct
    26461 tcaggactta tacctttata atgcgctgct gcttgtttga ttacatcata agccataacc
    26521 gaacagtgca ttttttgagg tggaacagct ggagtttctg gattatcacg catagcaaat
    26581 tccacatcta aatttgtgat ttttactgct tcatctacag tttttcctat acaaagatcc
    26641 accatagtat cactacttgc tatagctgta ccacaaccaa aacttttaaa ttttgcatcg
    26701 ataattttat cagttttttc atctacaagc caaaaaagtc ttaccgcatc gccgcaactt
    26761 tctgcaccaa aatcagctac gatcaatttt gcattgcgtg ctttagcatc ttcttcacta
    26821 aattctccca tatgttgagg attattcatt ctatcttgaa ctttttgtga atactcatcc
    26881 caaatggatc caccaattaa actatttttt cccatttttc atccttattt gtaattattt
    26941 ggattataag cataagtaca agaaattgct cttaatctct gtgttgcatt tttaatttgt
    27001 tttgctgcat aatcaatttc ttcttcagtg ttaaaacgtg acaaagaaag ccttaaagct
    27061 gtatgcgcta aatcatgctc cgcaccgata gcttccataa taggattgct ttctaaagct
    27121 tcacttgcac aggctgagcc cgtacttgca gctataccat ttttatttaa atcccaaagc
    27181 attgcttcgc cttcaactcc tttaatactt gctaagattg tattaggcac acggtgttct
    27241 ctttttccaa ccactgttgt atcaggcaag gctaaaattt gatcttctag tttatctctt
    27301 aaacggcgta tatgagaatc ttcaaaatca agcatagtat ttgcaatacg caaagcctcg
    27361 cccatagcca ctatgtaagg tacatttaaa gttccgcttc tacgaccacc catgtgttct
    27421 ccaccgtgta aaagtggggt aagtttaagt ccttttttta taaaaagtcc acccacaccc
    27481 tttggtccat gaaatttatg tgccgaaaat gaagcaaaat caactcctac ttgagttaaa
    27541 ttaaccttta ttttacctac tgcttgagta gcatctgtat gaaaaagagc accaaattca
    27601 tgcgcaagtt ctgccatcgc tttaatatca aaaatcatac ctgtttcatt atttgcccac
    27661 ataacactta caagtgctgt tttatcgcta atcactttgc gcaaatcttc tacagtagaa
    27721 actccttctt cgtttacagg aagttctatg acttttactc caagactttt taaaaaataa
    27781 gcagcagcag caacagcagg gtgttctaca ctagaaataa tcacttcatt gcgctctcta
    27841 tctaaaatat aatcaaaata cacaccctta agcacccagt taatgctttc tgtcgcacag
    27901 gaggttataa ctatgtcatc taagtcattt gctccaagcc ctgcataaag tttatctaaa
    27961 gcttctctta aagcaggatg tgttgcgctt ccatattgat gaaggctatt tggatttcca
    28021 tatatatcct ttaaaaaagg tagcatcaac tcataagcat taggatcaag cattgtcgtt
    28081 gcgttgttat ctaaatatac tttcacttta aaatccttaa tttatcctta attttaatta
    28141 ggatattttt tatctttatt tgaaaacgga taataacaaa aatttataaa aattaggtta
    28201 aaaattataa caaaaataaa atgctaaagt aaaattttaa agtgaaatat tttgtgaatt
    28261 ttatatagca aaaatgagaa atactatttc ttaaattttt cttcgtaata ctttactatt
    28321 tttgaatctt ctttggctgt atgtttaaag ataaaatctt gaacaacgag atttaatttt
    28381 tcggtcatta tatttacaaa tttagcttca ctgatgataa tttcttcaat ttctaagata
    28441 atttttctat gaattcttgt atgatggttg atataaggat atcctatttc tctcataaag
    28501 gcttcttcat ctgaaaaatg tctattgatc attatcaaca actctcttaa gacaattttt
    28561 aattcttttg ttccaacatg acattggttc attaaagaga gttttttaga aatttcaaaa
    28621 agttctttat gttgatgatc taaaagatca ttattcattg aaataatttt ttcattataa
    28681 gtcatggttt tgagtatttt tatatttata tttttcgaga gcggattata atgctataat
    28741 acttaaaatt ttattaatta attatataaa aattattatt attaaagtat ttataattta
    28801 tatatttttt aaaaaattat tttaaaccat cacagacata taagagttta aaattttatt
    28861 tatatttgct tgtttttgac gacgatctaa aaaattttct atagagctag aacgtagttg
    28921 atttgcttct tctaatcttt gcgtatcttg actttgattt tgatattgtt ttttaagagc
    28981 atcaaaatca ttgcgatttt gatcgatata aatttgaaat attgaacttg aatttgcaaa
    29041 ttctcttaaa tccatatctt tttggtagtt aatatattgt tgaaaaaata cagatagttt
    29101 gtcttgagta cttgtttttt tatctacgcc attaacataa agataaagat caaaactcat
    29161 ctttttttca ttttcttttt tgatgtaatc ttctatatct gtttcgccct tgagaatttt
    29221 ttgtaaattt tgatgagagc ttagttctaa agtggcaggt ttcataaaaa agttaaattc
    29281 tttttcgttt tgagttttta tatcatggta gataaaattc attaaaagac cagattttga
    29341 tacttctgca tttttagtta aataaggttt taaa
//
LOCUS       DARBBO010000010        29345 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.010, whole genome shotgun sequence.
ACCESSION   DARBBO010000010 DARBBO010000000
VERSION     DARBBO010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29345
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.010"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..393)
                     /locus_tag="SB854_000311"
     CDS             complement(<1..393)
                     /locus_tag="SB854_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEG0956353.1"
                     /translation="MADAHENEQRKGFWEFLQSLKKGKISTPQLILMGDIFDLLIGEI
                     SATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFFKRVKIFNLQEQPIKLNLHTS
                     KGNNLVLNNAFIKLAHGDIFLPPLLQFTL"
     gene            complement(430..915)
                     /gene="greA"
                     /locus_tag="SB854_000312"
     CDS             complement(430..915)
                     /gene="greA"
                     /locus_tag="SB854_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEG0956354.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIMDLDTEKES
                     KYTLVGICEGNLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            complement(927..2021)
                     /locus_tag="SB854_000313"
     CDS             complement(927..2021)
                     /locus_tag="SB854_000313"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HEG0956355.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELANLSFTQKINGILCIDSPAFNI
                     PFAKALKKTGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYI
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRHLMPIFKELSQKFKGE
                     KILCVPSFNLEKLEVYGDIGEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFIL
                     AYKAKAIDIFIAKLFVKLKHIGLANIFCDFAGKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILNEI"
     gene            complement(2118..2870)
                     /gene="peb3"
                     /locus_tag="SB854_000314"
     CDS             complement(2118..2870)
                     /gene="peb3"
                     /locus_tag="SB854_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HEG0956356.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIANKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVV
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            complement(3012..4381)
                     /locus_tag="SB854_000315"
                     /pseudo
     CDS             complement(3012..4381)
                     /locus_tag="SB854_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006639.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            4560..5336
                     /gene="surE"
                     /locus_tag="SB854_000316"
     CDS             4560..5336
                     /gene="surE"
                     /locus_tag="SB854_000316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HEG0956357.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPTSEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAHSNVNPRGVEYYWLAAANLDFEDE
                     KNSDIALLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            5326..5985
                     /locus_tag="SB854_000317"
     CDS             5326..5985
                     /locus_tag="SB854_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA cyclic N6-threonylcarbamoyladenosine(37)
                     synthase TcdA"
                     /protein_id="HEG0956358.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFKNLTLIDADKFEITNQNRQIHSENIGEEKAKVFERIYKVKGIVSKIDENFLKNFD
                     LSEFDLIIDAIDDIPAKVALAHLIDFKKQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAKK
                     S"
     gene            5969..6427
                     /locus_tag="SB854_000318"
     CDS             5969..6427
                     /locus_tag="SB854_000318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG0956359.1"
                     /translation="MLRKADIKDLNACLSLFEQSVKTLCAKDYTKDQICAWIKIDRQQ
                     WEEKFKYDEIFVYEKRGKIASFISVKQEQKLLDLLFTHPDFIRQGLAQNLLDFILKTY
                     LHNEIYTFASLSAKDFFLKNGFELIRENKVIKEGQNLKKFLMKKDVVYKN"
     gene            complement(6490..6870)
                     /locus_tag="SB854_000319"
     CDS             complement(6490..6870)
                     /locus_tag="SB854_000319"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEG0956360.1"
                     /translation="MNITLLKSKIHRASVTEARLDYIGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(6867..7715)
                     /locus_tag="SB854_000320"
     CDS             complement(6867..7715)
                     /locus_tag="SB854_000320"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEG0956361.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKHA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDATQMYLKNF
                     STYVDMNTITDKLCGAKRPGHFRGVCTVLTKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSKEERKASLAISQSIFLAEKLVREGEKN
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIENITDNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(7726..8550)
                     /gene="panB"
                     /locus_tag="SB854_000321"
     CDS             complement(7726..8550)
                     /gene="panB"
                     /locus_tag="SB854_000321"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEG0956362.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSARILDNSDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVLECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            8770..9543
                     /locus_tag="SB854_000322"
     CDS             8770..9543
                     /locus_tag="SB854_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HEG0956363.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(9628..10512)
                     /locus_tag="SB854_000323"
     CDS             complement(9628..10512)
                     /locus_tag="SB854_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEG0956364.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
     gene            complement(10509..11183)
                     /gene="modB"
                     /locus_tag="SB854_000324"
     CDS             complement(10509..11183)
                     /gene="modB"
                     /locus_tag="SB854_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HEG0956365.1"
                     /translation="MLDPAFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVRFPFKT
                     ILQSFISLPLILPPSVLGFYLLVTFSANSFLGQVLKEYFNLSLVFSFEGLVFASLIFS
                     LPFMVNPLQSAFSSINPNLLDASYSLGKSKIYTLFRVILPNSKAGIFSACAMSFAHTV
                     GEFGVVMMIGGHKQGETLVASIAIYDELEILNYSLAHQYAFILFIFSFLVLFSLYFIN
                     KKMSFQ"
     gene            complement(11176..11577)
                     /locus_tag="SB854_000325"
     CDS             complement(11176..11577)
                     /locus_tag="SB854_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum-pterin-binding protein"
                     /protein_id="HEG0956366.1"
                     /translation="MNLIKGQICELLNQEDIVIVKILSKEVIFSVLMLELKSLENLKI
                     GVSVELLFKEHELCFSASKTLLSVENSFLAKITKIKKGKLLYQVFFDFKGNELSSIIT
                     KEKALELEICENQEWLCFVKANDIVLRSHSA"
     gene            complement(11574..12323)
                     /gene="modA"
                     /locus_tag="SB854_000326"
     CDS             complement(11574..12323)
                     /gene="modA"
                     /locus_tag="SB854_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG0956367.1"
                     /translation="MKKFVVFFGILLFVSCLNAQNLSIFVASSASKAMSEVKDEFLKT
                     HPEDKIELVFGASGKYYELLKQGREFDLFFSADTKYAKAIYDDKNALIKPKVYVLGVL
                     ALYSLDENLLQGGVENLKEKANKITHLSIANPKVAPYGVAAKEVLENLGLNELLKDKI
                     VLGENISVPVLHVDSKNSDIAIVAYSLVSSINHPKGKAVIIDAKYFSPLEQSYVITKY
                     AKDKKLAFEFNEFIGSSKAKEIFKKYGFSTP"
     gene            complement(12374..13060)
                     /gene="bioC"
                     /locus_tag="SB854_000327"
     CDS             complement(12374..13060)
                     /gene="bioC"
                     /locus_tag="SB854_000327"
                     /EC_number="2.1.1.197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malonyl-ACP O-methyltransferase BioC"
                     /protein_id="HEG0956368.1"
                     /translation="MNFLKAKDYEKHAKVQDFMGLKLCEILKDLKISHFEKVFEFGCG
                     RGELSKKLQNFITFDEYLKNDILDFKENSSILIFDMNEIAKQDLSKEKFDLIVSNATL
                     QWLDLKRIIPSLRDMLNQNGILLLSTFAEQNLKEIKQSTGFGLNYFSLNELEQIFKVY
                     FNEVKITQELIKLSFDNALDVFRHLKLSGVNSLGFYPLNKGFLKEFEEKFQNKLTYHP
                     VFILCKNDIK"
     gene            complement(13057..13668)
                     /locus_tag="SB854_000328"
     CDS             complement(13057..13668)
                     /locus_tag="SB854_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF452 family protein"
                     /protein_id="HEG0956369.1"
                     /translation="MKYEFLCKNPDSKKLIVAFGGFASHPSHFSHLKSDKNVILFYDY
                     ENFDLNFNFKAFDELFLIAFSMGVCVANRLLKELNFKQKIAINGTNLGIDKSKGIHPT
                     IFKKTLQNFKLEHFKEALFKERKSLAKDFIFKDEKALKIELEKLFDFALVKQEENLLW
                     DKVYSSKKDEIFPPNALKNAFSKLIFLNEPHFAFFHFKTWDEL"
     gene            complement(13665..14807)
                     /locus_tag="SB854_000329"
     CDS             complement(13665..14807)
                     /locus_tag="SB854_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase
                     family protein"
                     /protein_id="HEG0956370.1"
                     /translation="MKLEKILQDLEQNHNLRTLTPLKHENKFVYKQDRKLLNLAGNDY
                     LYLASSKELKAEFLNTLKEQDLFFSSSSSRSLSGNFEIYEELESFLKAKFKDKEILHF
                     NSGYHLNISCIAALSSVSKTLFLADKFIHASMIDGLRLGGVDFFRFHHKDMNHLESLI
                     QKHYENYENIIVLSEALFSMDGDFSDFKTLCELKKRYDKIKLYIDEAHSVGCFDEEGL
                     GLVKKLTLENEVDFLVFTFGKALASMGACMICEEKYKKFFINKARAFIYSTALPPINV
                     AWTQFIFKKMPYFKKEREKLELLSTFFKSKLQEKNHTILGDAYIICLLLGENKKALEI
                     SQKLQKAGFFAPAIKEPTVPKNTARIRFSLHAGLNIEELERIIELL"
     gene            14875..16158
                     /locus_tag="SB854_000330"
     CDS             14875..16158
                     /locus_tag="SB854_000330"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HEG0956371.1"
                     /translation="MQNQILKNLDLKHIWHPCTQMKDHETLPLIPIKKAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKALLLECLSTPVPQGKDYTKELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEARFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(16145..16750)
                     /locus_tag="SB854_000331"
     CDS             complement(16145..16750)
                     /locus_tag="SB854_000331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HEG0956372.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(16760..17074)
                     /locus_tag="SB854_000332"
     CDS             complement(16760..17074)
                     /locus_tag="SB854_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG0956373.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELVSTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLITVIIACTVGLKF
                     LS"
     gene            complement(17077..17415)
                     /locus_tag="SB854_000333"
     CDS             complement(17077..17415)
                     /locus_tag="SB854_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG0956374.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWHYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIVILLLSI
                     IALKWISKEA"
     gene            17549..18085
                     /locus_tag="SB854_000334"
     CDS             17549..18085
                     /locus_tag="SB854_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEG0956375.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDPVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            18082..18627
                     /locus_tag="SB854_000335"
     CDS             18082..18627
                     /locus_tag="SB854_000335"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEG0956376.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHAKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            18629..19687
                     /locus_tag="SB854_000336"
     CDS             18629..19687
                     /locus_tag="SB854_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HEG0956377.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFF
                     APFLMLIMYYFFPVIARFFNLAFVTFIAFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            19731..20939
                     /gene="lysA"
                     /locus_tag="SB854_000337"
     CDS             19731..20939
                     /gene="lysA"
                     /locus_tag="SB854_000337"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEG0956378.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAAIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKNECEPDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQGEESLCDVVGGICESGDFFA
                     KARSLPSTQSDDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFEDQ
                     IALEEKFLKA"
     gene            20941..21708
                     /locus_tag="SB854_000338"
     CDS             20941..21708
                     /locus_tag="SB854_000338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HEG0956379.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYLIITNNTK
                     KLDFLEKLQQKGLVIKENAYIDPFSVLKHLLRPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFKDFATMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRRQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKDLKCQI"
     gene            21696..22769
                     /gene="pheA"
                     /locus_tag="SB854_000339"
     CDS             21696..22769
                     /gene="pheA"
                     /locus_tag="SB854_000339"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEG0956380.1"
                     /translation="MPNLEEFRNKIDAVDDKILDLLNERMTYVKSIGELKQSSGGSIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSRIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            22759..23853
                     /locus_tag="SB854_000340"
     CDS             22759..23853
                     /locus_tag="SB854_000340"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEG0956381.1"
                     /translation="MKFNEFLNNLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNLDEFKKLYETHKDEIKLIFLCL
                     PNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAMDDDEFTE
                     KTLENNFSQMELYKEFAKKHNIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            23905..25587
                     /gene="fliF"
                     /locus_tag="SB854_000341"
     CDS             23905..25587
                     /gene="fliF"
                     /locus_tag="SB854_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HEG0956382.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIIVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            25587..26615
                     /gene="fliG"
                     /locus_tag="SB854_000342"
     CDS             25587..26615
                     /gene="fliG"
                     /locus_tag="SB854_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEG0956383.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            26623..27453
                     /gene="fliH"
                     /locus_tag="SB854_000343"
     CDS             26623..27453
                     /gene="fliH"
                     /locus_tag="SB854_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HEG0956384.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENTNISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFTKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            27446..29293
                     /locus_tag="SB854_000344"
     CDS             27446..29293
                     /locus_tag="SB854_000344"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEG0956385.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHAQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIALRYPRGSFILDKEFNPCEIKLGKAQWLVKNNSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNSLLTKVLKFYH"
BASE COUNT        10377 a         4285 c         4775 g         9908 t
ORIGIN      
        1 cagagtaaat tgtaaaagag gtggtaaaaa aatatctccg tgagctaatt ttataaaagc
       61 attatttaaa acaagattat tacctttact tgtatgcaaa ttaagcttta tgggctgctc
      121 ttgtaagtta aaaattttta cccttttaaa aaaacaagaa agattaaaat catgattgcc
      181 ttctaagtag ataatttcaa tttttaaggc caattcttct aaaagttcta tgtaaggttt
      241 agcaaattca tgtgtagcag agatttcgcc tataagcaaa tcgaaaatat cacccataag
      301 tatgagttga ggggtggaaa ttttaccttt ttttaaggat tgtaaaaatt cccaaaatcc
      361 ctttctttgt tcattttcat gagcatctgc gattaaaatc gctccatttt gtagtaaaat
      421 tttttatcct taaaatttca aaggctcata atttatagaa aggatttcaa attcactttc
      481 accttttggc aaacgcactt taaaatcatc cccttctttt ttcccaagca tagcttttgc
      541 tattggagat gcgatggaaa tataaccctt atctaaattt ccttcgcaaa ttcctactag
      601 agtatatttg ctttcttttt ctgtatccaa atccatgatc acaacacttg aaccaaattt
      661 cacactatcg tgttcatagc tcgaaggatc gattacttga gctcttgcta gcaagtcact
      721 aagctctgca atacgacttt ctatcaaagc ttgcttttct cttgcagcat ggtattcagc
      781 attttctttc aaatccccat gacttcttgc tgtatcgatt tctattacaa cggcagggcg
      841 ttgattgtct tttaaatctt ttaattctgc ggctaactta tcatagccaa attgactcat
      901 tggttctttt tgcatgattt atccttttat atttcgttta ggatttttgc taaattttta
      961 gcacttccaa attgtaaata ttcttttaaa aaatcgactt tagcaaaaaa tgccttataa
     1021 tcatatttat tgtaagcttc atataaattt aaaacattga ctttatcttg taaaaattca
     1081 ggatttaaag cttcttttcc agcgaaatca caaaaaatat ttgcaagtcc tatatgtttt
     1141 aattttacaa aaagttttgc gataaaaata tcgatagcct ttgccttata agcaagaata
     1201 aaaggagttc ccactaaagc tgcttctaaa gtagctgttc cactacaaat aaaggcaaaa
     1261 tcagcttttt taagcacttt tggagtgtta ctttctatct taaattcgcc aatatcacca
     1321 taaacttcta atttttcaag attaaatgag ggaacgcaaa gaattttttc acccttaaat
     1381 ttttgagaaa gttctttaaa aataggcatt aaatgcctaa tttcactacg ccttgaacct
     1441 ggtaaaaagg ctatagtttt ttcatcatct ttttttgaaa atgtatgatt aatgtcttct
     1501 tgatttttaa attcttttat ctcatctaaa agcggatggc ctatataggt gcttttgtta
     1561 aaaaattgat tatcaaaggg caaaatagaa gctaaaatat caaaatgact ttctatgata
     1621 ggtatgcgac cttttttcca cgcccaaact tgaggcaaga tataataaat gcgtggaatt
     1681 ttactgcctg ttttttttaa agccttagca aaaggtatgt taaaagcggg tgaatctata
     1741 cataaaatcc catttatttt ttgagtaaag cttaaatttg caagttcttt tatagctttt
     1801 tttgctttga aaatcaaagg taaaacttct ataaaaccca tagcactaaa ttcatgtgag
     1861 ctataaagtg gtttagaatt taaatcaaat tctttgcata aactctcatc ataaatccca
     1921 tgaagttcaa attcaccaaa atctttttta taagctttta aaacttcttt taaatgcaaa
     1981 tttgctgaag gttctaaagc acaaactaaa aaggttttca aaaaatttcc ttatcaatat
     2041 tttaaacatt ttatcttatt ttggcttaat taaaagaagt tatgcaagaa tacacgctaa
     2101 aaagcgtgta tgaaggttta ttctctccag ccgtattttt taaaaatttc tttagcttcc
     2161 ttagaactta aataagcaat aaaatcttgt gtttctttgc tcgcaccttc tttagctacc
     2221 acattaaaag ttctataaac aaccaaatct ttttctatag ctacagcagt tcctatgtca
     2281 ggattgcttt ttgaccagtc aatccaagtg atccaagcat cggcttgatc ttgtgcgaaa
     2341 agctttcttg cacttccact atttggaaca aaggccacga tattgtttct aaaattttgt
     2401 atggttttta tatcttgagt tctacctatc atatcttccc aaactccagt tccagaagta
     2461 ttgctctttc cagcaccttc aggcacaacg attcttactt ttttattagc caaatctttt
     2521 aaacctttga tttttaaagg attgcctttt tgagtaagta tgatggcttc tctaaaatat
     2581 aaaggcttga ttttactcac attaaaatct tttccaaaat cactcgctat agctaaagcc
     2641 gattgatctg aagcgccaaa taaaatatct gcatcttttt tagccttttc aaaccaagtc
     2701 gcttgagggc caaaattcac atttacttta acgcctgttt tttcgctata tttgtttgct
     2761 atatctttta aggccgtgtg tgggccacct ggtccgtaaa ggtttacatc tgcatttgcc
     2821 atactaaaag ctaaggcaca tgcaccaaat aaagtaataa tttttttcat agtatttcct
     2881 tttatgataa atttttattg attgaaggta agattttaga aattatatgt taataaatag
     2941 ttataatgta acaaaaatat tattaaaatc taacttttgc ttggtatttt tgcaagcaaa
     3001 agttaaaatt gttattgatg cttcttttta gcgctaaaat gacataaagt agaacaaagt
     3061 atacaaagaa tacaagcact aaggagcatg ataagaccag cattccaact accatagtaa
     3121 tccacagccc aacctatagc ttttgttcca agtgaagcgc cgactacata actcataaag
     3181 ccacgaaatc ctacacaaga tcctactgca aaagcaggaa cgacttccat agtttgcaca
     3241 cttgctaaaa attgtggtat atagactaaa caccccgcca tagctgcaaa gaaaataacc
     3301 atataaagat tatttgaagt aaaatatcca ataatcataa agaaaataat caccatggcg
     3361 cctatagcag gaggcattct atagccttta aaaattttat ctgaaatata tcctgcaagt
     3421 aaagtagaag gtatagcagc ctattcaaaa agccaaaagg caatacccat ttgttcttta
     3481 ttaaagcctt ttgtttctag caagtaaata ggaagccaag aaataagccc aaaacgcacc
     3541 atataaacaa aagtatccat ccaagccaca tactaagcat ttttgttttt aagtacataa
     3601 tgataaaaaa tttcaaaact gcttaaattt ggagtttcta tagctttgat ttcttctgtt
     3661 ttaatccctc gcatttcatt gatttcagta atatcaacca aaccttcatt tttaggattt
     3721 cctttaactg cataaagcac ataaagacta atgataactg cacaagcagc aggagtataa
     3781 aaatgattca tgtgccaata tgtttcgtta aaatttgcca tactcacacc caataatgct
     3841 gctaaagcaa aacctgaaag cgaaactata ggagcaacta tcccgcctcc tatattatgt
     3901 gagatattcc aaacggccgt gtaaattccc cgctcttttt aggataccag tttgcaagag
     3961 cgataaaaga aggacctatc cccatacctt gaaaaacccc aagcgcgata acaaaaccta
     4021 cataagcgta aaaagaattt gaaaaaccaa gtaaaacatt tacaagagca cataaaataa
     4081 gacctaaagc catgtatttt ttaggatcag ctttgtcgct tataacgctc attgtaccct
     4141 tgctaatccc gtaagctata agcattgagc ctgtgattgt tccgatgtct gatttactga
     4201 gattaagttg attttgtata aatggagttg aaagagtgat attatttcgc acaagataat
     4261 atcccatata tcctataaaa accccactta aactccaagt tctcattttg taatatctag
     4321 gtaaaatttc ctaaagagga aatttaatag cttttgcctt aggtttgaaa aaatcaaaca
     4381 tatttaaacc atccttacta actttatatt tttatagttt aaataatgtt aatcgatata
     4441 aaataaaaaa ataattaaaa ataatacgaa atttatataa ttaaaaatta aaattttata
     4501 ctatgaagct ttaaaaaaat atgttaaaat ccagattttt atcttttgca aggaagacaa
     4561 tgaaagaaat tcttatcact aatgacgatg gttatgaaag cgaaggactt aaaaaactca
     4621 ttaagatgtt aacaaaagaa tttaaagcca agatcaccat agtagctcct actagtgaaa
     4681 aatcagcttg ttcgcactct ataaccctaa ccaaaccttt gcgttttgtt aaagtgggaa
     4741 aaagatttta caaacttgat gatggcactc cagcagattg tgtttatctt gctttgcatg
     4801 ctttatacaa aaagcgtttg cctgatcttg taataagtgg gattaataaa ggtgctaatg
     4861 taggcgagga tattacctac tcaggaactt gcgcaggagc tatggaggcg gttttacaag
     4921 gaattcctgc tatcgctctt tctcaatttt ataaaaaaag cgaaaaagaa ctagactata
     4981 aaaatgcttt acaaattacc aaaaaaatca ttcaaaatat ttttgataaa ggttttcctt
     5041 tggaaaaaaa agaattttta aatatcaatt ttcctgcaaa atcaaaaatc aaaggcatta
     5101 aaatttgtaa agcaggcaaa agggtttata attttgaagc ccattcaaat gtcaatccga
     5161 gaggagtaga gtactattgg cttgcagcgg cgaatttaga ctttgaagat gagaaaaata
     5221 gcgatattgc cttacttaaa aaaggctacg ctacaataac acctataatg ctggatctta
     5281 cagcttatga aagaatgaaa aaagttaaaa aatggttaaa ggcaaatgat gaatgataga
     5341 tttacacgta taaaatggct agttggagaa gaaaaatttc aaaaaatttc acaaacaaaa
     5401 gttttggttt gcggacttgg tggagtgggt ggaatttgcg ttgatgcgct ttatcgtagt
     5461 ggttttaaaa accttacttt aatcgatgcg gataaatttg aaatcactaa tcaaaatcgc
     5521 caaattcata gcgaaaatat aggcgaagaa aaggctaaag tatttgaaag aatttataag
     5581 gttaaaggta tagtcagtaa aatcgatgaa aattttttaa aaaattttga tttaagcgag
     5641 tttgatctta tcatagatgc cattgatgat attcctgcaa aagtagcttt ggctcatctt
     5701 atagatttta aaaaacaaat ttttatctcc tcaacaggtg gagctagaaa gcttgatcca
     5761 acacgcatta aaactacaag tatttttaaa actcacggcg atgctttagc gaaaaaattt
     5821 cgttatgagc ttagaaaatc aggctttaag ggaaattttg atgtggtatt ttcagatgag
     5881 gaagcgcatt gtaaagatct tggatctttt atgggtgtga ctgcatcttt tggtttagcc
     5941 ctagccagct tggcattaag aaaagttctt gctaagaaaa gctgatatta aagatttaaa
     6001 tgcttgtttg tcgctttttg agcaaagcgt aaaaacactt tgtgctaagg attatacaaa
     6061 agatcaaatt tgtgcttgga ttaaaattga tagacaacaa tgggaagaaa aatttaaata
     6121 tgatgagatc tttgtctatg aaaaaagagg aaaaatcgca agttttataa gtgttaaaca
     6181 agagcagaaa ttgcttgatt tgctttttac tcatcctgat tttattagac aaggtttagc
     6241 acaaaattta cttgatttta ttttaaaaac ttatttgcat aatgaaattt acactttcgc
     6301 atccttaagt gctaaagatt ttttcttaaa aaatggtttt gaacttataa gggaaaacaa
     6361 ggttatcaaa gagggacaaa atttaaaaaa atttttaatg aaaaaagatg tggtttataa
     6421 aaactagaag ttaagataag caaaaataat ggattaaaag atagaaaaaa ttacaaaaat
     6481 agctagatgt tagaaaatag ctccgtgttt ttcataattt gttatttttg tagcagtgtt
     6541 attttcatcc acaaaaacaa cttttggttt aaatgttttt gcttcttctt cattaaaatc
     6601 agcataagac atgatgatca ccttatctcc cacttctgca agacgagccg cagcaccatt
     6661 taagcataca actccttctt cttgcgtggc tatggtatag gtttcaaatc tagcgccatt
     6721 attgacattg actacttgga ctttttcgta ttctaaaatt ccactcgctt gcaataattt
     6781 ttcatctata cttatacttc ctatataatc aagcctagct tctgttacgc ttgcgcgatg
     6841 tatttttgat ttgagtaaag tgatattcat tttaatcctt gtactaaaaa attatcaatg
     6901 agtcttgttt ttccaacaaa agcagccacc gctcctaaaa cattatcagt gatattttcg
     6961 atattttcca tggtgttaaa atcgactaat tctatataat cgattttgat tagtttttct
     7021 ttttctaaaa tatctttcat agcttggatg atcttagaag tatttttttc tccctctcgg
     7081 actaattttt cagccaaaaa aatgctttga gatatagcta gtgacgcttt tctttcttct
     7141 ttgctaagat atacatttct agagctttta gctaagccat cttcttctct aatgatagga
     7201 caaatttgaa tttttaaatc aaaatttaaa tcatcaacca tatgcctaac gactacgcat
     7261 tgctgcgcgt ctttttgccc catatagact atatcagggt ttaggatatt aaaaaattta
     7321 gttaaaaccg tgcaaacgcc tctaaaatgc cccggtcttt tagccccgca aagtttatca
     7381 gtgatcgtat tcatatctac ataggtgcta aaattcttaa gatacatttg agttgcatcg
     7441 gggataaaaa ccatatcaac gccattatct tgacacattt taatgtcgcg ttctaaatct
     7501 cttggataac tagaaaaatc ttcattaggc ccaaattgca taggatttac aaagatactt
     7561 actataacct tatcttgtgt tttggcatgt ttgactaaac ttaaatgtcc atcgtgtaaa
     7621 aaacccatgg ttggaacata gcctatacta agttgatgtg atttccaatc ttttacaatt
     7681 tgttttgctt ctttgacaga agtaatgact tgcatatttg tatccttagt ataatttatc
     7741 taataattca tcatctaaat aatcaaagct gtgctcttgg gaaggaaaaa taccgctttt
     7801 aacttcatct ctatattttt caactcctac ttgaggatca attttatcaa aatgctttac
     7861 aaattttgct ttaaaatctt tatttaaacc caaaagatcg tgataaacta aaacttgtcc
     7921 atcgcagtat ttgcctgaac ctatgccgat tgttggaatt tctaaaatag agcttatttt
     7981 ttgtgctagt tttacaggca cacattctaa aaccaacata caagcacccg catcttgcac
     8041 agcttttgca tcatctataa ttttttgggc tgattgtaaa tctttacctt gaaccctata
     8101 gccacctagc atatttacag cttgtggggt tagtcctagg tgagcaacga cgggtattcc
     8161 tgattgggaa atcaatttaa tcttacttgc gatttctata cccccttcca cttttacccc
     8221 atttgcgtgg ctttctttga taaatcttga ggcatttaag atagcgtcac gatctgaact
     8281 ttgataagac ataaaaggca tatcagcaag tacgaaagac tttttagctc cgcgagaaac
     8341 agctttggta aaaatcaaca tttcatccat agtaacactt aaagtatctt gcataccaag
     8401 taccgtcatg gctaatgaat ctccaaccaa tataatatct atatcgctat tgtctaaaat
     8461 tcttgcacta tgataatcat acgcacttac catggttatt ttttcatttt tggccttttt
     8521 ttccaaaaaa ctaatcatac tttttctcat tttgcatacc tcaattttta gctataaaat
     8581 aataagcaaa aaactagcat ataatttttc ataaatagta aatgaatgat aaagtaagtt
     8641 atatttaatc gatggattgc tttaatggtt acaattttag aaaatttcag ttcatgttaa
     8701 aggatattta aagaaaataa agctttaaaa agtattttgt ttaaaattat ttaaatagaa
     8761 agatatttta tgaaaaaaat aactttattt ttacttttct taaatttagt gtttgggcaa
     8821 gataagatat taaataattg gtttaaagag tataatacaa gcggcacttt tgttttttat
     8881 gatggaaaaa cttgggcgag taacgacttt tcaagggcta tggagacttt ctctcccgct
     8941 tccactttta aaatttttaa tgctctaatt gcacttgata gtggtgtgat aaaaactaaa
     9001 aaagaaattt tttatcacta tagaggtgaa aaagtatttt tatcttcttg ggcgcaagat
     9061 atgaatttaa gttcagctat aaaatattct aatgttcttg cttttaaaga agtggcaaga
     9121 agaattggta tcaaaactat gcaagaatat ttaaacaagc ttcattatgg taatgctaaa
     9181 atttccaaga tcgatacttt ttggcttgac aactcactaa aaataagcgc taaagaacaa
     9241 gcaattttgc tttttagact ttcacaaaat agcttacctt tttctcaaga agcaatgaat
     9301 agtgttaagg aaatgattta tttaaaaaat atggaaaatt tagagctttt tggaaaaaca
     9361 ggttttaatg atgagcaaaa aattgcttgg attgtaggtt ttgtgtattt aaaagatgaa
     9421 aataaatata aggctttcgc gctaaattta gatattgata aatttgaaga tttatataaa
     9481 agagaaaaaa ttttagaaaa atatttagat gaacttgtaa aaaaagttaa aaatgatggc
     9541 tagtgagtat ttcgtaaaat gcaaaaatac ttaattgtat gatttgcgta cacttaaagt
     9601 actcattaaa aaattaaatt tttgctctta tttatcaagt tttcctacga tgatagggtt
     9661 aaaggctttt atggatagca aaagcgtatc gccgattttt acatcttgat aagcttttag
     9721 aaattcctct tcactaagag tgattttaat aatatcttga tttaaaagca aggttaaaac
     9781 cactaaaata tcactttttt taatttctag caaagttgca cttaagcgta attttgcgct
     9841 gatatttgaa tgagtaaaaa attcattttt aggaaaatct ttaataattt ttccgttttt
     9901 aagctctaaa attctatgac ttaacttata aatttcagct agatcatgac ttaccaataa
     9961 agtacttatt ttaaaatact ctaaaatctt ggttaattca tcttgtaaat tggcacgcat
    10021 tttaaaatcc aaagcactca aaggttcatc taaaagcaag atttttggtt ctcttgctaa
    10081 agctcttgct aaagctactc tttgtgcctg ccccccactt aaatgtttag gataaatttt
    10141 agctaaattt tcaagcttca ttaaggctaa aagctcgcta acctttgctt tagaactagc
    10201 ggcataggcg atgttttctt ttatattcat atttggaaaa agcgcataat cttgaaaaac
    10261 aaaaccaatt tttctttttt gtaaagctaa actaaaattt tttgaagaat caaaccaaag
    10321 ttcattatct acttctatac gccccaattt aggctttata agtcccgcta tgatttttaa
    10381 aagagtggtt tttcctgctc cactttcgcc aaaaagtgca gtaatttttc ctgattctat
    10441 atctttttta aaatttaaat ccagtcttcc tttagcggta ttcataggat gattgatatc
    10501 aattcttatc attgaaaact cattttttta ttgataaaat aaagactaaa aagtactaaa
    10561 aaagaaaaaa taaacaatat aaaagcatat tgatgggcta agctatagtt taagatttca
    10621 agttcatcat aaatagctat actagccact aaagtttcac cttgtttatg tcctcctatc
    10681 atcatcacga ctccaaattc acccacagta tgggcaaaac tcatcgcaca agcactaaaa
    10741 attcctgctt tagaattagg taaaatcact ctaaaaagag tataaatttt acttttacct
    10801 aaactataag aagcatcgag caaatttgga ttgatcgatg aaaaggcact ttgcaaagga
    10861 tttaccataa aaggcaaaga aaaaatcaaa gaagcaaaaa caagaccttc aaaactaaaa
    10921 accaaagaaa gattaaaata ttcttttaaa acttgcccta aaaaactatt agccgaaaaa
    10981 gttacaagca aataaaatcc caaaacacta ggaggtaaaa tcaaaggcaa ggaaataaag
    11041 ctttgaagga ttgttttaaa aggaaaacgc acaaaactta acaaataagc taaaaaaaca
    11101 ccgataaaaa aaaggataaa agtcgtgata aaagcaagtt taaaagtaag ataaagggtt
    11161 tgtaaaaaag ctggatcaag cactatgact ccttaataca atatcatttg cttttacaaa
    11221 acaaagccat tcttgatttt cacaaatttc aagttctaaa gctttttctt tggtgataat
    11281 actagaaagt tcattacctt taaaatcaaa aaatacctga tataaaagtt tgcctttttt
    11341 aatttttgta attttagcta aaaaagaatt ttcaacactt aaaagagttt tgcttgcgct
    11401 aaaacaaagc tcatgctctt taaaaagaag ttctacactc acaccaattt ttaaattttc
    11461 taaagatttt aattcaagca ttaaaacact aaaaatcact tctttagaaa gtattttaac
    11521 aataactata tcctcttgat ttaaaagctc acaaatttgt ccttttataa ggttcatggt
    11581 gtgctaaatc cgtatttttt aaaaatttct tttgcttttg aagagccaat aaattcgtta
    11641 aattcaaagg ctaatttttt atccttagcg tattttgtga tgacataact ttgctctaaa
    11701 gggctaaaat actttgcatc aattataaca gccttgccct taggatgatt gatagaagaa
    11761 actaaagaat aagccactat agctatatct gaatttttgc tatctacatg taaaacaggc
    11821 actgagatat tttcgcctaa aacgatttta tccttaagaa gctcatttaa acccaaattt
    11881 tcaagcactt ctttagctgc tactccataa ggagctactt taggattggc tatgcttaga
    11941 tgcgtgattt tgtttgcctt ttcttttaaa ttttcaacgc ctccttggag taaattttca
    12001 tccaagctat acaaagccaa aactcccaaa acataaactt ttggttttat taaagcattt
    12061 ttatcatcat aaatagcctt agcatattta gtatccgctg aaaaaaagag atcaaattct
    12121 cttccttgtt ttaaaagctc ataatatttt ccagaagcac caaaaaccaa ttctatttta
    12181 tcttctggat gtgttttcaa aaactcatct ttaacttcac tcatcgcctt tgaagctgaa
    12241 gaagctacaa aaatacttaa attttgcgca tttaaacacg aaacaaaaag caaaatccca
    12301 aaaaatacta caaacttttt catttagttt tccttgtgta aaaatttaat ttttggatta
    12361 taacacaaaa aattcatttt atatcatttt tgcataaaat aaatacagga tgataagtga
    12421 gtttgttttg aaatttttct tcaaattctt ttaaaaaacc tttatttaaa ggataaaatc
    12481 ctaaagaatt tactccgctt aattttaaat gtctaaaaac atctaaagca ttatcaaagc
    12541 ttaattttat gagttcttga gtaattttta cttcattaaa atagacttta aaaatttgct
    12601 ctaattcatt taagctaaaa taatttaaac caaaacccgt gctttgcttg atttctttta
    12661 aattttgctc tgcaaaagta gaaagaagta aaatcccatt ttgatttagc atatctctaa
    12721 gacttggtat aatgcgtttt aaatcaagcc attgcaaagt tgcatttgaa acaataagat
    12781 caaatttctc tttacttaaa tcctgttttg caatttcgtt catatcaaaa attaaaatac
    12841 tagaattttc tttaaaatct aaaatatcgt tttttaaata ctcatcaaaa gtaataaaat
    12901 tttgaagttt tttgctcaat tcacccctgc cacaaccaaa ttcaaatact ttttcaaaat
    12961 gtgaaatttt taaatctttt aaaatttcac aaagttttaa acccataaaa tcttgcactt
    13021 ttgcatgttt ttcataatct tttgctttta aaaaattcaa agctcatccc aagttttaaa
    13081 atgaaaaaaa gcaaaatgcg gttcatttaa aaaaataagt tttgaaaaag cattttttaa
    13141 agcatttggt ggaaaaattt catctttttt acttgaataa accttatccc aaagcaaatt
    13201 ttcttcttgt tttactaaag caaagtcaaa aagtttttca agctctattt tcaaagcttt
    13261 ttcatcttta aaaataaaat ctttggctaa gcttttgcgt tctttaaata aagcctcttt
    13321 aaagtgttct aatttaaaat tttgcagggt ttttttaaaa attgtaggat gaattccttt
    13381 tgatttatct atgcctaaat ttgtgccatt tatggctatt ttttgtttaa aattaagctc
    13441 ttttaaaagt ctatttgcca cacaaactcc catagaaaaa gcgattaaaa aaagttcatc
    13501 aaaagctttg aaattaaaat ttaaatcaaa attttcataa tcataaaata aaatcacatt
    13561 tttatcgctt tttaaatgcg aaaaatgact aggatgtgaa gcaaaccctc caaatgccac
    13621 tataagtttt tttgaatcag gatttttgca taaaaattca tatttcataa aagctctatt
    13681 atcctttcaa gttcttctat attaagtccc gcgtgtaaag aaaaacgaat tcttgctgta
    13741 ttttttggca cggtaggttc tttgatcgcg ggagcaaaaa atccagcttt ttgaagtttt
    13801 tgtgaaattt ctaaggcttt tttattttca cctaaaagca agcaaataat ataagcatcg
    13861 cccaaaatag tgtgattttt ttcttgcaat ttacttttaa aaaaagtgct taaaagctct
    13921 aatttttctc tttctttctt aaaataaggc atttttttaa aaataaattg cgtccaagct
    13981 acattaatag gtggcaaagc tgtagaataa ataaaagctc tagctttgtt gatgaaaaat
    14041 tttttatatt tttcctcgca tatcatacaa gcacccatgg aagcaagggc ttttccaaag
    14101 gtaaaaacca aaaaatccac ttcattttct aaggttagtt ttttaacaag ccccaaaccc
    14161 tcttcatcaa aacaacccac gctgtgtgct tcatctatat aaagcttgat tttatcataa
    14221 cgctttttaa gctcacacaa agttttaaaa tcgctaaaat ctccatccat actaaacaaa
    14281 gcttcgctta aaacgatgat attttcataa ttttcataat gtttttggat caaactttct
    14341 aaatgattca tgtctttatg atgaaaacga aaaaaatcaa ccccgccaag tcttaagcca
    14401 tcaatcatac ttgcatgaat aaatttatcg gctaaaaaaa gcgtcttaga aacgctagaa
    14461 agtgctgcta tacaagagat atttaaatga tagccactat taaaatgcaa aatttcctta
    14521 tctttaaatt tagcctttaa aaaactttct aattcttcat aaatttcaaa atttccactc
    14581 aaacttcttg aactcgaact tgaaaaaaac aaatcttgct cttttagggt gtttaaaaac
    14641 tcagctttta actctttaga agacgccaaa taaagataat catttcctgc taaatttaaa
    14701 agtttgcgat cttgcttata aacaaattta ttttcatgtt ttaaaggtgt tagagttctt
    14761 agattgtgat tttgctctag atcttgcaaa attttttcaa gcttcatttt tttcctgtaa
    14821 atttaaaaat ttaaagtatt attttgccaa aatattttta aaaaagaagt tataatgcaa
    14881 aatcaaatct taaaaaatct cgatttaaaa cacatttggc acccttgcac acaaatgaaa
    14941 gatcacgaaa ccctaccttt aatccctata aaaaaagcaa aaggcgtgtg gctttatgat
    15001 tttgatgata aggcttatat ggattgtgtg agttcttggt gggtaaatct ttttggtcat
    15061 tgtaatgaaa aaatcgcaaa tgccatcaaa aaacaagttg atgagcttga gcatgtgatt
    15121 ttagcaggtt ttacacatga gcccattatc aagctttctg caagactttg cgaaaaagta
    15181 ggcaggaatt ttaacaaatg tttttatgca gataatggat caagtgctat tgaagtagca
    15241 cttaaaatga gttttcatta tcatttaaat aagggagtga aaaaaagtaa atttttatct
    15301 ttaagcaatt cttatcatgg tgaaacctta ggagccttaa gtgtgggcga tgtagcgctt
    15361 tataaagata cttacaaagc cttgctttta gagtgtttaa gcacgcctgt gccacaaggc
    15421 aaagactaca ctaaagagct tgaaatttta aaagatattt tagaaaaaaa tgcaagtgaa
    15481 atttgtgctt ttatacttga acccttggta caatgtgcag gaaatatgca tatgtatgaa
    15541 gcaaggttta ttgatgaggc cataaagctt tgccataaat ttggagtgca agtgattttt
    15601 gatgaaattg cagtgggctt tggacgcaca ggaactttgt ttgccttaca tcaatgcaaa
    15661 caaagccccg attttatctg cctttcaaaa gggataacgg gtggatttat gccactttct
    15721 gtagtgctta caagagatga aatttataat gctttttatg atacttatga aagccaaaag
    15781 gcttttttac attctcatag ctatacggga aataccttag cttgcgcggc agcaaatgcg
    15841 gttttagata tctttgagga tgaaaatatt ttagtaaaaa atcaaatttt aagcgagttt
    15901 atcaaaaaag aattttcaag acttgaaaaa tttgactttt tgggtaattt tagaacttgc
    15961 gggatgatca gtgcttttga tattttaagc accaagtata aacgcgtagg actttttgta
    16021 tttcaaaaag ccttagaaaa aggtttgctt ttaagacctt tagcaaatac gatttatttt
    16081 atgcctcctt acatcatcac aaaagaacaa atcgtttatg tactagagag tttagagcag
    16141 atttttaagg aattttaagt tgtaaaattt cttgcatttg ctctttaaaa tctttattta
    16201 aaatgctatt ttcatcaaaa aaatcaagat tgattatagg aatttttgca taatttttta
    16261 taaaatcatc ttgtaagata tcttttttac ccatcattac aagggctaaa agattgatat
    16321 ttctttgctt taaagcttca atgctaagca agatatgatt aatgcttcca agatagtatt
    16381 ttgctaccaa aatcgtaggg tgtttgaaaa tattcacaaa atcaatcata gtgtaatttt
    16441 catccatagg agaaaaaagc ccacccgcaa gctcaataag taggtttttg ctttttggta
    16501 aaatgatatc taaggcttta taatcaagct tttctttgat ttttccaaga tgaggagaag
    16561 ctggagtttg caaaaaaata ccttctttaa aaatctttgt ttttgggcta aattttgcaa
    16621 taaactcact atctgttgga gttcctgctt gaatgagttt aaaataatca tagttaaaat
    16681 tcgcacaaaa agctgcacta aaatgtgttt ttcctacatc agtatgtatt ccactcacat
    16741 aaatttgcac aaaaaatcct taagaaagaa attttaaacc tactgtacaa gcaataatca
    16801 cagtgattaa aaaaagtttt aaaaaacttt tactttcttt ataaaaaagt actcctatca
    16861 ttaccccacc agcagttcca gctcctgtcc atatagcata agcaacactc atagcgatat
    16921 tttgcatact taaacttaaa aaagtaaaag aaaatccaaa acacactatc aaagccaaaa
    16981 ggtaaagctt atttttagtg cttacaagtt ctttcatgat caccacgcca aaaatttcac
    17041 aagcagtagc taaaaacaaa taaaaccatt ccatatttaa gcttccttgc ttatccattt
    17101 aagggctata atgcttaaaa gtaaaatcac tataagcaca agtttaatta tagaaacagc
    17161 ctcgttaaaa ataaacattt catttaaaac caccccaata gtgccaatgc ctacaaaaac
    17221 actataagta atacttactt caagtctttc acaagctttt aaaaagcaag taaaagaaat
    17281 acaaactcca atggctgtta aaatatagtg ccaaatttct gtagaatact taagtccact
    17341 gacccaaaaa cattctataa tcccgcctaa gattattaaa aaccaagcta tattgatatt
    17401 gaatttttca ttcacatgaa gccttaaatt aacataatat ttgtaaaaca aattatatct
    17461 taaagaaatt aaaagaagct ataaatttac ttttccataa gccaaaatta gatataatca
    17521 aagctcattt tttaagaaag gataaaagat gttagaaggt atcgttagag agagtatcgg
    17581 tagaaaagct gctaaagctt taaaaagaga tggttatcta attgcaaaca tctatggaaa
    17641 aggattagaa aacatcaatg ccgcttttaa agtaaatgag tttattaagg aagttcgtaa
    17701 aaaaactact ttaatttttg atgtaaaagt aggttctcaa actttaagcg ttgtagttgt
    17761 ggattatcaa aaagatcctg taactgcaga acttaaacat gtggatttaa aagttgcgca
    17821 aaaaggtgtg atttctaaat acatggttcc agttaaaatc acaggaacag ctataggtct
    17881 taaaaataaa ggtgttttaa ttcaatcaaa aagaagatta aaagtaaaat gtgcagctga
    17941 aaatttacca aatttcttcg aacttgatgt aagtaaactt gatgtgggtg atgctttact
    18001 tgttcgtgat attgtagttc ctgcgggagt aactatgatt gatgctgata gagtagcggt
    18061 tgtaggtgta gaaaaagcta gatgatttta gtcgtagggc ttggcaatat aggcgtagag
    18121 tatgaaaata cccgtcataa tgtcggtttt atgctaattg acttactttt aaaagaaagc
    18181 aattttacaa atcttacaaa ctctaaattt aaaggagagc tttttaaaat aggttcttct
    18241 ttacttcttc ttaaacctag tacttatatg aataattcag gacttagcgt aaaagcagtg
    18301 aatgattttt ataaatgcga aagaatgata gttatccatg atgatataga tataaattta
    18361 ggagccttgc gctttaaaaa aggcggttca agtggtggac ataatgggct taaaagcata
    18421 gatactttat gtggaaatga ctatgaaaga gtgcgtatag gagtgggaaa gggtgaaaat
    18481 gtgatttccc atgttttagg taaatttaaa tccgaagaag aaataacttt aagcaaagtt
    18541 ttagagcatg caaaaaaagc tttgcttgag cttattgaaa atgatgattt gtctgctata
    18601 tcatccaaat acagcctaaa ggcttaagat gtggatattt tttcgtttta tttcagggat
    18661 ttatttaaaa aattttttta ttatattttt ttctttactt ggtttttatt gcggtattga
    18721 tttgctctta aattttaaag atctaccaaa agccgcaaat cttgatttgc tttatgttat
    18781 gtttttatct ttttcggcag tgccttatgt attacccatt tctttgattt ttgctttggt
    18841 agtttctttg atttctatga tcagagcaaa tgaatttgta agtctttatg cgttaggact
    18901 gagtagaaat tatgttattt tatttccttt tttatgggct ttattttttt gttgtattta
    18961 tataggattg aattttactt cttttgctta tgcaaatgat tataagagaa atattttgaa
    19021 aaatggcact attatgaatc aaagtggaga agtgtttttg aaatttaaca ataattttgt
    19081 ttatatttca aagataaaca atggacaaaa tagtgctcaa aatataaaaa tttttaatat
    19141 taatgattta aatttaagct cttttgtaag tgctaaaaat gcccattttg aaggtgaaag
    19201 ctggattttg cgagatggta atattacatt attacctaaa aattatgaac ttgctaatga
    19261 tggtttaaag atacaagatt tctccgagct taaatcactt gagggtttta aaccaaagat
    19321 tatagaaggg gttgctagta atagtgatta ttcaatatct gacgcacttg aaagttttga
    19381 gctttttaag gcgcaaaatg tcaatacaga tactcttaaa atcaatcttt ataaatttgt
    19441 ttttactcct ttttttgcac catttttaat gcttattatg tattattttt ttcctgtaat
    19501 agcaagattt tttaatcttg cttttgtaac ttttatagct tttgtagtga ctttgatgat
    19561 ttggggagtc ttgtttttgc ttactagatt aagcgaaaat agtgtgattg caagtgaaat
    19621 tggcattgta gtgcctatta taattttggg ttgtttaagt gcttatatgt attataagca
    19681 tcgataaatt aagctttgtg tagtaaaatt ataaaaatta aaggttaaat atggattata
    19741 aacaattaaa gcaagaattt aatactcctt tttatattta caattttgat ttcataaaag
    19801 agcgtttttt aaatctcaaa gaggctttta aggcaagaaa atctcaaatt ttttacgctg
    19861 taaaagccaa ttcaaattta agtttgttgc aaatgcttgc aaatttagat agtggatttg
    19921 attgtgtaag tataggcgag gtaaagcgtg ccttaaaagc aggagcaaaa gcttataaga
    19981 ttatttttag tggagtagga aaaaccaaag aagagttaag acaagcttta gaatatgata
    20041 ttttatatat taaccttgaa agcgaagctg aaatgatgct tttagaaagt gtggctaaag
    20101 aacttaatct aaaggcaaga atcagtattc gtgttaatcc aaatgttgat gcaaaaactc
    20161 atccttatat ttctacagga ttaaatgaaa ataaatttgg tgttgaaatt gatatagcaa
    20221 gaaaaatgta tctttatgca aaaaattcat cttttttaga gcctgttgga gtgcattttc
    20281 atataggttc gcaactttta gatatttctc ccattcatga agcagcagcc attgttgcaa
    20341 aacttgtaag agagttaaaa gccttgcaaa tcgatcttaa attttttgat ataggcggtg
    20401 gtttgggtgt ggcttatgaa aaaaatgagt gcgaacctga tctttatgat tatgcacaag
    20461 gtatattagc acaacttcat gggcttgatt taactatagg aatggagcct ggaaggtatc
    20521 tagttgctaa aagtggagaa tttgtttgtt cagtgcttta tgaaaaacaa aataaaacca
    20581 agcgttttgt tgtagtagat ggagcgatga atgatcttat acgcccaagt ttatacgagg
    20641 cttatcatga aataatctta ccttataatc aaggcgaaga gagtttatgt gatgttgtag
    20701 gtggaatttg tgagagtggg gacttttttg ctaaagcaag gtctttgcct agcactcaaa
    20761 gtgatgatat aatggttatt aaaaatactg gagcttatgg ttttagcatg agtagtaatt
    20821 acaatactcg taataaagtt tgcgaattag cccttgaaga aggacaggta agattgatcc
    20881 gtcaaagaga aaattttgaa gatcaaatcg ctttagaaga gaaattttta aaggcttaaa
    20941 atgttttttt tagatgttca agggacttta atttctgatc atgataaatc tttaatccat
    21001 ggtgctaaag aactgatcga ttttttaaat gcaaaaaatc ttccttatct tatcatcact
    21061 aacaatacaa aaaaacttga ttttttagaa aaattacagc aaaaaggatt ggttataaaa
    21121 gaaaatgctt atattgatcc tttcagcgtt ttaaaacacc ttttaagacc ttgtaaagtt
    21181 gcggcttttg gtgcagatga gtttgtaaaa agtcttgaaa atcttggttt tgagctcgat
    21241 tttgtaaatc ctagtgctgt gcttgtggct agttatgatg attttaaatt taaagatttt
    21301 gccactatga tagaattggc tagaagagaa gttagattta tagctatgca cgaaactagt
    21361 atttataaaa aagatggtag gccttatcct ggtgtaggta gcattatggc tatgcttaaa
    21421 aatgctattg attttgaata cgaggttgtg ggtaagccta gcattgcttt ttataaagaa
    21481 gctttaaatt taataagaag acaaaattca aaaatcgatt ttgaagatat taaaatcatt
    21541 agtgatgatt ttaggggtga cttgcttaag gcaaaagaac ttggcatgaa aaccttgcta
    21601 gttttaagcg gcaagataag cgacacaaaa gggcttgata cggatttgct tgatggagtt
    21661 tatcctagtg tttttgagtt tttaaaggat ctaaaatgcc aaatttagaa gaatttagaa
    21721 ataaaatcga tgcggttgat gataaaattt tagatctttt aaatgaaaga atgacttatg
    21781 ttaaaagtat aggtgagctt aagcaaagta gtgggggaag tatttatcgt cctgagcgtg
    21841 aaagagccat tatcaatcgt ttaaaaaatg caaatttagg acttttagat caaaatgcca
    21901 tagaggcaat ttatcaagaa atttttgcag tttcaagaaa tttagaaatg cctcaaacta
    21961 tagcttattt agggcctgaa ggaacttata cacatcaagc agcaagaagt cgttttggtg
    22021 cgatgagtcg ttatatagcc ttggctaata tcgaagatgt ttttaaagag ttaagcaaca
    22081 aagaagcaaa atatggtgtt gtacctatag aaaataatac cgaaggtgca gtgggcatta
    22141 ctttagattg tctaggtaag tataatgagc ttaaaatttt tggcgaaatt tatatggata
    22201 ttcatcattc ttttgtagga attaatgaaa atttaaaaga aatcaaacgc atttattcgc
    22261 atccgcaagg ttataatcaa tgtcgtaaat ttttagaaag tcatgaactt agtgctatag
    22321 aatttgttcc ttcaaaatct acagctaatg cagcttacct agcttcgcaa gataaatatg
    22381 cggcagcaat ttgttctaga atagcggcta agctttataa tgtgcctgta ctttttgata
    22441 aaatagaaga taatgcagcc aataaaacaa gatttttaat tttaagcgat attaaaaatc
    22501 ctaaaatgcc aaattgtaaa acttctattt tagcacacac agcacataaa cctgggggac
    22561 ttagcttttt attagagcag tttaaaaaag aaaatatcaa tcttactaag cttgaatctc
    22621 gccctgtaaa atcaaaagaa tttttacaca gtttttatat agattttgaa gggcatattg
    22681 atgatgaaaa tgtaaaaaaa gccttaaaag atatacaaga gattgtttgg cttggatctt
    22741 atttatcagg agaaaaagat gaaatttaat gaatttttaa ataatttaag caattatgaa
    22801 cccggcaaag atatagaagt tattgctaaa gaatatggcg ttaaagaagt gataaaatta
    22861 gcaagcaatg aaaatccttt tggcacgcca ccaaaagcta tagaatgttt aagacaaaat
    22921 gcaaacaaag cccatcttta ccctgatgat agtatgatag aacttaaaag cacattggct
    22981 caaaaataca aagttcaaaa tgaaaatatc attatcggtg caggcagtga tcaagtgatt
    23041 gaatttgcta tacattctaa gttaaattct aaaaatgctt ttttgcaagc tggagttact
    23101 tttgctatgt atgaaattta tgccaaacaa tgtggtgcaa agtgttataa aactcaaagt
    23161 attactcata atttagatga gtttaaaaaa ctttatgaaa cgcacaaaga tgaaattaaa
    23221 cttatttttt tatgcttacc aaacaatcct ttaggcgagt gtttggatgc aagtgaggcg
    23281 accgagttta ttaaaggtgt aaatgaggat tgtttagttg tgattgatgc agcttataat
    23341 gaatttgcaa gttttaaaga tagcaaaaaa catttagaac cttgtgaatt gattaaagaa
    23401 tttgacaatg tgctttattt gggaactttt tctaaacttt atggattagg aggcttacgc
    23461 attggttatg gcatagctaa tgctaatatt attagtgcat tttacaagct tcgtgctcct
    23521 tttaatgtga gcaatcttgc tttaaaagca gcagttgcag caatggatga tgatgaattt
    23581 actgaaaaaa ctttagagaa taatttttct caaatggagc tttataaaga atttgctaaa
    23641 aaacataata tcaaaattat cgatagttat acaaatttca tcacttattt ttttgatgaa
    23701 aaaaatagta cagatttgtc tgaaaaattg cttaaaaagg gtataataat aagaaattta
    23761 aaaagctatg gtttaaatgc tatacgcatt actataggaa catcttatga aaatgaaaaa
    23821 ttttttacag aatttgataa gattttaaga tagataaatc aaataaaaat atgtaaaatt
    23881 cgctaaacta agggatgaga attaatggat tttaaaaata tgcttcatca aattgggcaa
    23941 ctttatcaaa atttaactcg caagcagcgt atagtgattg ctgcatctat tatagttgtg
    24001 gttgggtttt tggttttttt agctttattt cgtggaagtg gtagtaatgc aaataatgga
    24061 tatgcagttt tagttgaaaa tgtaagccca agttcttctg ctgcaattgt agctaaactt
    24121 gaacaaaata atattcccta taaattagaa agtgaaaata aaattttagt tccacaagat
    24181 caggtttatc gtcaaagaat gtttattgca agcgaaggtc ttataaaaga tagtcgcgtg
    24241 ggttttgaag cttttgatac tcaagctttt ggagctacaa atgaagagca aaaggtaaaa
    24301 taccaaagag ccatagaagg cgaacttgca agaactattg agactttaga acctattcgt
    24361 agcgctgttg tacacatagc atttcctaaa gatagtgttt ttactgaaag gcaaattccg
    24421 cctacagctt cagttgttgt taatgttcgc gaaggcttaa agcttactag aaaacaaatt
    24481 gatggtataa aaaatattgt ttcagcggca gttccaaaac ttactaaaga aaatgttaag
    24541 attagtgatc aaagtggtgt gcctttagat gagcaagaag catatgaaga tgacttggtt
    24601 cgtgcgcaaa ttaaatttaa aagtgatcaa gaaaaagctt tagaagataa gattatagaa
    24661 aatttagctc cttttgcagg tggcatggat aaagtaaaag tgagtgtaaa tatagatttt
    24721 gatttttcca agcaagaatc tcaaagtgaa atttatgatc caaatcctat agtacgtagt
    24781 gagcaaactt taaacgagga aagaacaggt agaaaagatc cagaaattca gggtgttcca
    24841 ggtgctgttt ctaatatagg tcctgttgaa ggacttgaca ataagggtca aattgacact
    24901 tataaaaaaa atcaagttac tacaaataat gaactttcta aaactatcac aaataccaaa
    24961 aaacaatttg caacagtttt acgcacttca gcagctgtta ctatagatgg aaaatatcaa
    25021 gatgtggttg atgaaaatgg ggatgtgaaa agcgaatatg tcccattgac taaagaagag
    25081 cttgcaagtg ttgagagtat agttaaaaat actattaatt ttagcgctac tagaggtgat
    25141 agtgttgtgg tgcaaaattt accatttcat cgtgagtcga ttagagttga gagtaaagtt
    25201 aaaacttttt acaatcgttt tgttgagcca tttattccgc cggttaaata ctttattgca
    25261 gcgattttac tttttatttt ttacaaaaaa gttattgctc catttactca aaaaatgctt
    25321 gaagatgtcg cagcacaaga ggaaatgcag caaggtccaa atgctgtttt agatgatgct
    25381 gaagatgctt tagagaaatt taatgcagca aggaaaaaag ttgaagaaca acttggtttt
    25441 ggggataact tcaatgaaga ttctatccag tatgaggttt tgcttgaaaa attgcgtggt
    25501 ttggtaagtg ataaaggtga ggaaattgca gcacttttgc aaaacttaat tcaaaatgat
    25561 agcgaatttg gcgaaaagga tatgtgatga taaagctaag tgaagaacaa aaaatggtct
    25621 atgatgattt atcgatgcct gagaaggtag cgatatttct tatacaactt ggcgaagatg
    25681 caaccacttc tgtgttttca catatggaaa ttgatgtaat cacagaaatt tcacgttata
    25741 ttgctatggc taaaaatgtt gatagatctg tagctactgc agttttagaa gaattttaca
    25801 ctctgcttca atcaaatcaa tatattaaaa gtggtggttt ggaatatgct aaagaaatac
    25861 tttttcgtac ttttggacca gagattgcaa ataaaattct tgaaaaactc actaaaagta
    25921 tggagaataa tcaaaatttt gcttatttgg cgcaaattaa accacagcaa cttgcagact
    25981 ttattaccaa agagcaccca caaaccatcg ctcttatttt ggcacacatg gattctattc
    26041 atgcggcaga aactttagag tattttagcg atgaattaag ggctgaggtg gttataagaa
    26101 tggcaaatct tggtgatatt tctccaagta ttattaaaag agtttctgca gtgctagaaa
    26161 gcaagcttga aagtcttacc tcttataagg ttgaagtggg cggcccaaga gcagtagcag
    26221 aagtgcttaa tcgtttgggt caaaaagcaa gcaaatcaac cattacttat attgaacaaa
    26281 gtgatgaacg cttagcagag actattaaag agcttatgtt tactttcgat gatatacaaa
    26341 aacttagcac tcaggctata agagaaattt taaaagtagc cgataagcgt gatttaatga
    26401 taggtttaaa aggtgcaagt gaagagttaa agcaaaaatt cttagccaat atgtctacgc
    26461 gtgcaagcga agcttttctt gaagaaatgg gttttttggg tgctgtgcgt gttaaagatg
    26521 ttgaagatgc acaaagaaag gttgttgaag tggtgcaaaa acttgcagaa caaggtcttg
    26581 ttcaaacagg cgatgcggat gaaatgatag agtaggtgag agatggttaa tcgtagcaat
    26641 gtaatttctg gtggggcttc tgatcagcat gttgttgaag gatatcgttt taaagttatt
    26701 tcagaatttg ataatcatac aggtgaaaaa aaacatactc aaactccaga tgaagaaaat
    26761 actaatatat ctttaaatga cgaaaaacca gtcgaagaaa atcaagtcat tgcctctaca
    26821 caagctgtta tggaaactca aattccaaca tttcaaccaa gctttgttga agatttactt
    26881 aaaaaaacag atgaaatgtc aagcaatatt attaaacttc aaatgcaaat agaaagccaa
    26941 gagaatgaat ttaataaccg cttaaattca gaacttgaaa atgctaaaga aaaatttacc
    27001 aaagagggtt atgagaaagc aaaagaagaa tttcaaaagg aattgagtga ttttaaagat
    27061 aagtatttaa aaagtatagc caaacttgat aatgcttgcg aaaatcttga aaatttcata
    27121 gaaaaaaatg agaaagaatt agcagatact gctatagata tcgctaaaga agtaatctta
    27181 aaagaacttg aactaaattc aagtaagata gcttatgctt tggctaaaga tttaatcggt
    27241 gagcttaagg gtgctagtgc aattgagctt aaggttaatg cagaggatta tgagtattta
    27301 aaagagcaat ttgatcagaa tgctcatatt aaaataagtc ttgatgatgc aattagcaaa
    27361 ggaagtgttg ttattataag tgacgcaggc aatatagaat ccaatcttaa ctctcgtcta
    27421 actaaaatta aaaaaatggt gaataatgag taaaaaattt gcccatactc aagaagagtt
    27481 agaaaagcta agtttaaaag aattagaaaa tttagcagca tctatgcgtg aaaaaatcat
    27541 acaagttgtg agtaaaaatg gtgggcattt aagttcaaat ttgggtgctg tagaacttag
    27601 tatagcaatg catttggttt ttgatgcaaa aaaagatcct tttatttttg atgtgtcgca
    27661 tcagtcttat acacacaagc ttttaagcgg aaaagaagaa atatttgata ctttaagaca
    27721 aatcaatggt ttaagtggtt atacaaaacc tagcgaggga gattattttg tagcagggca
    27781 ttctagtacc tctatttctt tggcagtagg tgcttgtaag gctattgctt taaagggtga
    27841 aaagcgtatt cctgttgctt tgattggaga tggtgcttta agtgcgggta tggcctatga
    27901 ggctttaaat gaattgggtg attctaaatt tccttgcgta atacttttaa atgataatga
    27961 aatgagtatt tcaaaaccaa ttggagcaat ttcaaagtat ctttctcagg ctatggcaac
    28021 gcagttttat caaagtttta aaaagcgtat tgctaaaatg ttggatatat tgcctgatag
    28081 tgctacttat atggccaagc gttttgaaga gagttttaaa cttattaccc ctgggctttt
    28141 gtttgaagaa ttagggcttg aatatatagg gcctattgat ggacataatt taggtgaaat
    28201 tatttctgca ttaaaacaag caaaagctat gcaaaagcct tgtgtgatac atgctcaaac
    28261 cataaagggt aaaggctatg ctttagctga aggaaaacat gctaaatggc acggggtggg
    28321 agcctttgat atagatagtg gagagagtgt taaaaaaagt gatactaaaa aatctgctac
    28381 tgaaattttt tctaagaatt tgcttgattt agcctcaaaa tatgaaaata ttgttggggt
    28441 tacggcggct atgccaagtg gaacaggtct tgataagctt atagaaaaat atccaaatcg
    28501 tttttgggat gtggctattg cagaacagca tgcagtaact tctatggccg ctatggcaaa
    28561 agaaggattt aaacctttta ttgcaatata tagcaccttt ttgcagcgtg cttatgatca
    28621 agtgatccat gattgtgcga ttatgaattt aaatgtggtt tttgctatgg atagggcagg
    28681 gatagtaggc gaagatgggg agacgcatca aggtgttttt gatcttagtt ttttagctcc
    28741 tttgccaaat ttcactcttt tagccccaag agatgaacaa atgatgcaaa atataatgga
    28801 gtatgcttat ttacatcaag gacctattgc tttgcgttat cctagaggga gttttatttt
    28861 ggataaagaa tttaatcctt gtgagataaa acttggtaag gcacaatggc ttgtaaaaaa
    28921 taatagtgaa attgcttttt taggttatgg acaaggtgtg gcaaaagcgt ggcaagtctt
    28981 aagagccttg caagaaatga ataataatgc taatttgatt gatttaattt ttgctaaacc
    29041 tttagatgaa gagcttttgt gtgagcttgc taaaaaaagt aaaatttggt ttatttttag
    29101 tgaaaatgtt aaaattggcg gtatagaaag tttaattaat aattttttac aaaaatatga
    29161 tttgcatgta aaagttgtta gctttgaata tgaagacaaa tttattgaac atggaaaaac
    29221 aagtgaggtg gaaaaaaatc tagaaaaaga tgtcaatagt ttgttgacga aagttttaaa
    29281 attttatcat taaataataa aaaatattat ttaatataaa cttcttttaa taaaaatttt
    29341 attat
//
LOCUS       DARBBO010000011        26282 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.011, whole genome shotgun sequence.
ACCESSION   DARBBO010000011 DARBBO010000000
VERSION     DARBBO010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 26282)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26282)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26282
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.011"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(29..841)
                     /locus_tag="SB854_000345"
     CDS             complement(29..841)
                     /locus_tag="SB854_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG0956386.1"
                     /translation="MPQLSIIIPLFNSCDFISRALQSCINQTLKDIEILIIDDKSKDN
                     SLNIVLEFAKKDPRIKIFQNEENLGTFASRNIGVLHSSSDFIMFLDSDDFLTLDACEI
                     AFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDEVLNQKEFLEFLSKQRHFCWSVWAKC
                     FRKDIILKNFEKVKIDERLSYGEDVLFCYVYFMFCEKIAVFKTCIYHYEFNPNGRYEN
                     KNKEILNQNYQDKKKSNEIIKRLSKEFLLDEFHQKLFEVLKREEVGVKNRLK"
     gene            900..1859
                     /gene="waaF"
                     /locus_tag="SB854_000346"
     CDS             900..1859
                     /gene="waaF"
                     /locus_tag="SB854_000346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HEG0956387.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTAL
                     FKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFTFRSAFSSKIILHILKTRQRYFF
                     DKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
                     SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVAIFGSTKFTQTSPWQNQNAKLV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHL"
     gene            complement(1840..2400)
                     /gene="gmhA"
                     /locus_tag="SB854_000347"
     CDS             complement(1840..2400)
                     /gene="gmhA"
                     /locus_tag="SB854_000347"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG0956388.1"
                     /translation="MINLVEKEWQEHQKIVQESEILKGQIAKIGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSPNVLEAFKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDESF"
     gene            complement(2397..3782)
                     /gene="rfaE1"
                     /locus_tag="SB854_000348"
     CDS             complement(2397..3782)
                     /gene="rfaE1"
                     /locus_tag="SB854_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HEG0956389.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKSLGADVFALGVVGDDESGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDTSEILLENELIALFDEKIKDFKAVVLSDYAKGILTPKVCKAVI
                     KKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGENLEKGIKKLKE
                     DFSLRYSIITLSEVGIALFDEGLKIAPAKALEVYDVTGAGDSVIAVLAFCLANGIEIF
                     KACELANEAAAVVVSKIGSVSVSFDEIRSFKSMSFEKKIKNKEELLTLLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDILIVGLNSDASVKRLKGESRPVNSEFQRACMLAA
                     FYFVDFVVIFDENTPLELISFLKPDILVKGADYKDKLVVGSNLVSRVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(3775..4728)
                     /gene="rfaD"
                     /locus_tag="SB854_000349"
     CDS             complement(3775..4728)
                     /gene="rfaD"
                     /locus_tag="SB854_000349"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HEG0956390.1"
                     /translation="MRVAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFERSDQIYRDFT
                     YIKDVINANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLSCEYIPNPYVKSY
                     QFHTEAKLDQTWDYQPKFSLEEGIKDYLDEIKRLFEKEVNA"
     gene            complement(4729..5247)
                     /gene="gmhB"
                     /locus_tag="SB854_000350"
     CDS             complement(4729..5247)
                     /gene="gmhB"
                     /locus_tag="SB854_000350"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HEG0956391.1"
                     /translation="MKTKALFLDRDGVINIDKKYVYKIEDFEFCDGIFELCRYFLAKK
                     YLLFIATNQSGIARGYYKESDFFKLCDYMLKEFTKQGIKIDKIYHCPHLEGCECRKPK
                     AGMLLKAKDEFNLDMKNSIFIGDNLSDMQAGLNADIGTLILVNEEKKEGDFFRQFKNL
                     KEILSFFKEKDI"
     gene            5371..5673
                     /locus_tag="SB854_000351"
     CDS             5371..5673
                     /locus_tag="SB854_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG0956392.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(5696..5902)
                     /gene="ccoS"
                     /locus_tag="SB854_000352"
     CDS             complement(5696..5902)
                     /gene="ccoS"
                     /locus_tag="SB854_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HEG0956393.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(5899..8256)
                     /locus_tag="SB854_000353"
     CDS             complement(5899..8256)
                     /locus_tag="SB854_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HEG0956394.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKIFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIENIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYVYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFDGKEFVSKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENTPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLLAYFSRTVLLIAFICFAFWFFYKEESFEISLINAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     FKEVFLDKALDLNELYNFVKLSKHPISQNIASYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEELLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREGAKELIA
                     YLKKEKKELMILSGDHQKAVEKIARKLEIQNYQTSCLPEDKMKTIENLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            8365..9663
                     /gene="rho"
                     /locus_tag="SB854_000354"
     CDS             8365..9663
                     /gene="rho"
                     /locus_tag="SB854_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEG0956395.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IKKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            9667..11196
                     /locus_tag="SB854_000355"
     CDS             9667..11196
                     /locus_tag="SB854_000355"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEG0956396.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPEKIKAFYQAILTKDKEKVFAYLEELQDYEAS
                     SVIDEMLFYLKESFFAKSTEFSILIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQEIKQENITNITPRITPSPIIPNLEKKIEKNAYEILLDSIYDRDFDLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKAKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(11193..11372)
                     /locus_tag="SB854_000356"
     CDS             complement(11193..11372)
                     /locus_tag="SB854_000356"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEG0956397.1"
                     /translation="MFWDYFFNLCILWFFAFQVVVAEWFGMWMSKVWKGLPDTIRLVT
                     YMFLALIFISLKNDD"
     gene            complement(11534..11713)
                     /locus_tag="SB854_000357"
     CDS             complement(11534..11713)
                     /locus_tag="SB854_000357"
                     /inference="COORDINATES: protein motif:HMM:NF021453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HEG0956398.1"
                     /translation="MQQKCFCISKMIRFSKIIILLTVVSLAGIVVFGNVTDYNSNFQF
                     VSHVMSMDTKPDLFR"
     gene            complement(11785..13884)
                     /gene="copA"
                     /locus_tag="SB854_000358"
     CDS             complement(11785..13884)
                     /gene="copA"
                     /locus_tag="SB854_000358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HEG0956399.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACKKIDGVKDASVSYVNSSGVF
                     LLEDQKKRKDIIAKIKNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGFKSKNLDMNTLVALGTLSAFVYSF
                     LVYLQIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGSIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLSIFKHNLSKDDFDKLCQIESLSSHPIAKALH
                     KDHFFDLKGEGRVIVGSGIKYKEDNDNYLVGNAQFLHENEIDTKESDIFFDTFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVFNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFHAQLKSEEKLQIIQKFKKTLFVGDGINDAAALSAASVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRGIIKLNLFWAFIYNVLCIPIAAGFIPFISLSPHIAALAM
                     CFSSITVVLNSLRLKRI"
     gene            complement(13884..14078)
                     /locus_tag="SB854_000359"
     CDS             complement(13884..14078)
                     /locus_tag="SB854_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal transport/detoxification protein"
                     /protein_id="HEG0956400.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLEQKILSLNLEEN
                     QVSNFTKEFQDLGFEIVERL"
     gene            complement(14068..15018)
                     /gene="czcD"
                     /locus_tag="SB854_000360"
     CDS             complement(14068..15018)
                     /gene="czcD"
                     /locus_tag="SB854_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HEG0956401.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSVDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSDIVYIDTILAIVLSILLL
                     RWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCNLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(15094..15357)
                     /locus_tag="SB854_000361"
     CDS             complement(15094..15357)
                     /locus_tag="SB854_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HEG0956402.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(15427..15921)
                     /locus_tag="SB854_000362"
     CDS             complement(15427..15921)
                     /locus_tag="SB854_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEG0956403.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIVLAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(15918..16694)
                     /locus_tag="SB854_000363"
     CDS             complement(15918..16694)
                     /locus_tag="SB854_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HEG0956404.1"
                     /translation="MEKPDIQRLTNFLIIYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAIYDHKYDLE
                     KAKVVFGQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            16761..17687
                     /locus_tag="SB854_000364"
     CDS             16761..17687
                     /locus_tag="SB854_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEG0956405.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVIQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVPNLENLASCDIIILAFRKESLKELPSRLVELKNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKLLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQKLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(17684..18286)
                     /locus_tag="SB854_000365"
     CDS             complement(17684..18286)
                     /locus_tag="SB854_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG0956406.1"
                     /translation="MQEIISFIVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEAKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLINFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(18367..18594)
                     /locus_tag="SB854_000366"
     CDS             complement(18367..18594)
                     /locus_tag="SB854_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956407.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(18605..20023)
                     /locus_tag="SB854_000367"
     CDS             complement(18605..20023)
                     /locus_tag="SB854_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HEG0956408.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNTDDEITKLQKQLAQIQAELAEI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVDGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMGWSGSPLDLDAGRNTRTSGP
                     VLYVDRAYLDYYITPEWIATIGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSDQKDADANLYYAAVEGELPIEGM
                     GDNLLLLNVAYISDFSLPIDGGAIINNLIGGAGVKNLGDATIANIHFENYKAFGTNFN
                     WFASLGYYNGSNANAFWIPAASSLANNLKFNEEDGYAVHVGGRYDFTKALKVGYEFFW
                     GSRYWYTMSRPSINDPLNIRMTRGTAHDVYVIYQLDRYQFLRLSYTNIQNKWGNRGIP
                     LMGAKKEKSRADNIMLMYNVKF"
     gene            complement(20187..20669)
                     /locus_tag="SB854_000368"
     CDS             complement(20187..20669)
                     /locus_tag="SB854_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEG0956409.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     VNEGFYKDLNFHRVIPNFVIQGGCPHGNGIGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
     gene            complement(20679..21386)
                     /locus_tag="SB854_000369"
     CDS             complement(20679..21386)
                     /locus_tag="SB854_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEG0956410.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIEAKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            21495..21836
                     /locus_tag="SB854_000370"
     CDS             21495..21836
                     /locus_tag="SB854_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG0956411.1"
                     /translation="MNIAKKELFVAWFFLIAAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIILSIVG
                     IIMINIGEVKE"
     gene            21836..22144
                     /locus_tag="SB854_000371"
     CDS             21836..22144
                     /locus_tag="SB854_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEG0956412.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKHKIWGLAAIINAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(22162..23754)
                     /locus_tag="SB854_000372"
     CDS             complement(22162..23754)
                     /locus_tag="SB854_000372"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEG0956413.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFELVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFDTEYYVNDAGNQIYLL
                     GLSILLSVKENILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSQENIPSLADWAK
                     DKMLVLIKQNLEQAKIKIDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAILNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(23766..24005)
                     /locus_tag="SB854_000373"
     CDS             complement(23766..24005)
                     /locus_tag="SB854_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEG0956414.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            complement(24007..24630)
                     /gene="gmk"
                     /locus_tag="SB854_000374"
     CDS             complement(24007..24630)
                     /gene="gmk"
                     /locus_tag="SB854_000374"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEG0956415.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKP
                     REGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            complement(24627..26270)
                     /locus_tag="SB854_000375"
     CDS             complement(24627..26270)
                     /locus_tag="SB854_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEG0956416.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDDAQDDNAN
                     KTLETQNLEHETIKEQTQEDTQIDLDLTLEDGESEKEDLSQEHTALDTESSLDELDDK
                     NDEDLEIKEDDKNEEIEKQELLDDSKTNTLEMQEELSESQDDNSNKTLETQNLEHDNL
                     EHDNLEHETIKEQTQEDTQIDLDLTLEDGESEKEDLSQEHTALDTEPSLDELDDKNDE
                     DLEDNKELQANISDFDDLPEVEEQEKEMDFDDLPEDAEFLGQAKYNEESEENLEEFAP
                     VVEEDVQDEIDDFASNLSTQDQIKEELAQLDELDYGIDSDNSSKVLEDFKDEPILDDK
                     ELGTNEEEVVVPNLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVTKDDNSEEIVN
                     ELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
BASE COUNT         9111 a         4807 c         3339 g         9025 t
ORIGIN      
        1 agaactaaaa tcaaaaaaaa tttttaatct attttaatct atttttcacc cctacttcct
       61 ctctctttaa aacttcaaat aatttctgat gaaattcatc aagtaaaaac tctttggata
      121 gtctttttat gatttcattg cttttctttt tatcttgata attttgattt aaaatttctt
      181 tatttttgtt ttcatatctt ccatttggat taaattcata atgataaata caagttttaa
      241 aaacggctat tttctcacaa aacataaaat aaacataaca aaaaagcaca tcttcaccgt
      301 aactcaaacg ctcatcgatt ttaacctttt caaaattttt taagatgata tcttttctaa
      361 aacacttcgc ccaaaccgac cagcaaaaat gcctttgttt gcttaagaat tctaaaaatt
      421 ccttttgatt caaaacttca tcttgtttaa aacgataaaa ttgtttggtt tttaccctat
      481 gtacaaaggc atcaaaacaa agcaaatcaa aacctttttt catttcttta aacgctattt
      541 cacaagcatc gagtgttaaa aaatcatcac tatctaaaaa cattataaaa tcagaactag
      601 aatgcaaaac tcctatattt ctacttgcaa aagtgcctaa attttcttca ttttgaaaga
      661 tttttattct tggatctttt ttagcaaatt ctaaaactat atttaaacta ttatctttac
      721 ttttatcatc gataatcaaa atttcaatat cttttaaagt ctgatttata caactttgta
      781 aagcccttga aataaaatca caagaattaa aaagcgggat tatgatcgaa agttgtggca
      841 tatttttcct aaattttgtt aaaataataa aaacaattct atcaaagttt aggaaattta
      901 tgaaaatttt tatacatctt cccacttggc tgggcgatgc agtgatggct tcacctgctt
      961 tatacgctat aaaagaacat tttaaaaatg cccagtttat cctttatggc tctttggttt
     1021 ccacagcact ttttaaagaa tttcctaatt ctaaaatcat catagaaaat aaacaatctc
     1081 gctataaaca agccctatct ttacgtaaag aacttggtaa aatcgatctt agctttactt
     1141 ttagatctgc gttttcttct aagattatct tgcatattct taaaacaaga caaagatatt
     1201 tttttgacaa aaataagcac aaagaagaac atcaagtttt aaaatacctt tattttatag
     1261 aaaactcact tagtataaaa gctcatttta aagacttaaa gcttcccttt aagctaaaat
     1321 ttcaaaaccc tcttgtctta aaaaatggta aaaaaattct aggactcaac cctggtgcaa
     1381 gctttggaag tgcaaaaaga tgggatgcga gttattttgc taaagtggct ttaaatttca
     1441 gccaaagtca tgaaatttta atctttggcg caggaaaagc cgaacaagaa ctttgtaatg
     1501 aaatttatca aattttaaaa gaacaaaaca taaaagtaaa aaatctttgc aataaaacca
     1561 ccatcaaaac cctttgtcaa aatatcgctt tttgcgatct tttcatcaca aatgacagtg
     1621 gacctatgca cataagtgcg gtttataagg taaaaaccgt ggctattttt ggctccacaa
     1681 aatttaccca aacttcacct tggcaaaatc aaaacgcaaa attagtgcat ttagatctag
     1741 cttgtatgcc ttgtatgcaa aaaacctgcc ctttaaaaca ccacaaatgc atgaaagatt
     1801 taaagcctca aagggttata gaagaggcta gaaatttact taaaaactct catctatgat
     1861 ctgacaaagt gtgtgtatga ttaaaatgtg catttcttga attctagccg tatcatcgct
     1921 tggcacaaca agattatgat cacaaagctt attcatcatt ccaccgccct ttccactaag
     1981 ccctaaacaa agcatattaa gttcttttgc ttttttaaaa gcttctaaaa cattgggact
     2041 ttttccactg gttgaaatgc cgattaaaac atcattttca tttcctaaag cctccacttg
     2101 tcttgaaaaa acaaactcaa aaccatagtc atttcctata gcactaagcg ctgaagtatc
     2161 ggttgtaagt gctatacctg ctaaagcctt gcgttctttt ttataacgcc cactaagttc
     2221 agctgcaaaa tgctgtgcat cagctgcact tccaccattt ccgcaaatta aaattttacc
     2281 acctttttta agacattcac ataaaagctc gcctatttta gcgatttgtc cttttaaaat
     2341 ttcactttct tgaacgattt tttgatgttc ttgccattct ttttctacta aatttatcat
     2401 tttttatcct taatcttttc tataatctta ctcgtactaa atccttcttc aaaatcgatt
     2461 aattcaactc ttgaaaccaa atttgaacct acaacaagtt tatctttata atcagctcct
     2521 ttaaccaaaa tatcaggctt taaaaagctt ataagttcta aaggtgtgtt ttcatcaaaa
     2581 atcactacaa aatctacaaa ataaaaagct gccaacatac aagctctttg aaactctgaa
     2641 tttacaggac gactctcgcc tttgagtctt ttcacactcg catctgagtt caaacctaca
     2701 atcaaaatat cgcctaatct tttagctttc tcaagatatt ttatatgtcc aaaatgcacg
     2761 atatcaaaac aaccatttgt aaaaacaatc tttttatcat tttgtttcaa aagcgttaaa
     2821 agctcttctt tatttttgat ctttttctca aaactcatac ttttaaaact tctaatctca
     2881 tcaaaactca cactcacact acctatttta cttaccacaa cggctgcagc ttcattggca
     2941 agttcacaag ctttaaaaat ttcaatccca tttgccaaac aaaaagccaa aacggcaatc
     3001 acactatcac ccgctcctgt tacatcataa acttctaagg ctttagcagg tgcgattttt
     3061 aaaccctcat caaaaagcgc aatccccact tctgaaagag tgatgataga ataacgcaaa
     3121 gaaaaatctt cttttaattt tttaatccct ttttctaaat tttcaccctc taaattttca
     3181 aatttcaaag cttctaaagc ttctttttta ttaggcgtga gcaaggttgc accgctatat
     3241 ttactaaaat cactgccttt aggatcaact aaaacaggaa tatttaaagc cttagccttt
     3301 tttatcacag ccttgcaaac cttaggcgtt aaaataccct tagcataatc gcttaaaacc
     3361 acagctttaa aatctttaat cttttcatca aacaaagcta taagttcatt ttcaagcaaa
     3421 atctcacttg tatcttcttc atctagtctt aaaacctgct gattgtgtgc cataatgcga
     3481 tttttaaaag gggttttgcg tcctttttgg atcaaaaatt ctccttttaa attttcttgt
     3541 aaaaatttcc cactctcatc atcacccaca acaccaagcg caaaaacatc agcccctaaa
     3601 ctttttaaat ttgcataaac attcgcagcc ccgcctaatc ttttatcttc cttaagagtt
     3661 ttagctacca aaacaggggc ttcaggactg atacgcgaac aatcacacca agtataatta
     3721 tccaccataa aatcccctat aatcaaaatt ttaggttttt gctggcttaa aaactcaagc
     3781 atttacttcc ttttcaaaaa gtctttttat ctcatctaaa taatctttaa tcccctcttc
     3841 aagactaaat tttggttgat aatcccaagt ttgatctagt tttgcttcag tatggaattg
     3901 ataagatttt acataaggat ttgggatata ttcacaagac aaatcagtct ttaactcttt
     3961 ttgcaaaata tcgactatat cttgaaaggt tcttgcttta ccactgccta cattataaac
     4021 cccgcatttt gaatcaaggg cgattaaatt ggcattaata acatctttaa tataagtaaa
     4081 atctctataa atttgatcac ttctttcaaa caagcgtgga ttttttcctg ctaaaatttg
     4141 atggccaaat tgcaaaacca tagaagcggt tttgttttta taaaattcgc cttttccata
     4201 aacattaaaa tatctaagtc ccaccaaatg ggctttatcg tagtattttt tcgctaactt
     4261 atccatcatc aattttgaaa aagcataagg attttttggt tcttcatctt tacctacggt
     4321 ttgtggactt tttgcatcgc cataaactga agctgaactt gcataaataa gctttgcatt
     4381 aagatctatg ctaagttcta taaaatcttt aaaagtattt aaattggttt gtaaaacctt
     4441 agtttgatca aaaactgtag tgtctgaaat tgctgcttga tgaaaaataa tctctggctt
     4501 aaaatcttca atctttttta aaactttttc atcgttaata tcacctgcaa aaagttctcc
     4561 atcaaattca agtaaatttt taaaatgtcc aaaactttgt aaatttccat tttcaaaagt
     4621 cgcactgcta cgcattttat caatgattaa aatttcatgt ttttcttgca aatttaaagc
     4681 cagttgcgaa cctataaatc ctgcaccacc tgtgattgct actctcattt aaatgtcctt
     4741 ttctttaaaa aaactcaaaa tttcttttaa atttttaaat tgtctaaaaa aatcgccttc
     4801 ttttttttct tcatttacca aaatcaaagt gccaatatca gcatttaacc ctgcttgcat
     4861 atcgcttaga ttatctccga taaaaataga atttttcata tctaaattaa actcatcttt
     4921 tgcttttaaa agcattcctg ctttaggttt gcgacattca caaccttcta aatgcggaca
     4981 atgataaatt ttatcaattt ttataccttg tttagtaaat tctttaagca tataatcaca
     5041 aagcttaaaa aaatcacttt ccttataata tcctcttgca atgcctgatt gatttgtcgc
     5101 tataaaaagc aaatattttt tagctaaaaa atatctacaa agttcaaaaa ttccatcaca
     5161 aaattcaaaa tcttctattt tatagacata ttttttatct atattaatca caccgtctct
     5221 atctaaaaat aatgcttttg ttttcataaa aaacattata atatagcttt tttgaaaaga
     5281 aaataaacat tatctttatt ttcttaagat ttttataaaa ataaagatat ataatatctg
     5341 gcaatctaat ttttactgag gagaaatcaa atgaaaaaat tattagtagt ttctgctttg
     5401 gcatgtcttg gtgtttctgc ttttgctgca gatggtgcta cactttttaa aaaatgcgca
     5461 gtatgccatg gtgcaaatgc tgacaaagtt tacttaaaca aagttccagc tttaaaaact
     5521 ctttcttctg ctgaaagact tcaatacatg aaagaatatt cagaaggtaa aagaaatgct
     5581 tatggtcaag gtgcgatcat gaaacttaac cttaaaggtt taactgaaga agattttaaa
     5641 gctatcgaag ctcatattga aactttaaaa taatttctaa aaaaggcttt cctttttaag
     5701 aaagcctttt tttatccaaa gcttcttttt tacgtctttc taattctata gcatcacgta
     5761 aagaatcctc atcatcattt aaagtagtaa atttataatc atcatcaaat tgcttatttt
     5821 taatccccca aagcaaagtt gccaaaatga taaaaaacgc taagatagaa actcctatca
     5881 tcatcatgat tatactattc attctttaat ccttaaagca tttaaaacga ctattatact
     5941 actaaaagac atagaaatag cagcaaataa aggatttatc atacccaaaa aagccaaagg
     6001 tatggtgcaa gcattataaa acaaagaaaa agcaagattt tgcttgataa ttttaaaggt
     6061 gtttttagat aatttgatgg ctttttttaa agaaagcaag tcatttttca aaagcaaaac
     6121 atcactactt tctatagcta gatcacttcc ttctcttaaa gtcattgaaa cacttgcgta
     6181 ttttaaagct agtgcatcat ttaccccatc acctacaaat aaaactttgt aatttttact
     6241 taaattttct atagttttca tcttatcttc aggcaaacaa gaagtttgat aattttgaat
     6301 ttctaatttt ctagctattt tttccactgc tttttgatga tcgccactga gtatcattaa
     6361 ttctttcttt tcttttttaa gataagcgat aagctctttt gcaccttctc ttaaaacact
     6421 atcaaactca aaaaaagcta aaattttacc ttccttggca aaaataaaat gcgtattatc
     6481 aaattcttta gccacaatac ccttttcttg caaaaattta gaacttccgc ctaaaagcaa
     6541 ctcttcattt aactcagcac ttaaaccttt agcttgaata ctcgaatgct ttttaaaatc
     6601 caaatttaaa tccttagctc ctttttgctt taaatacgac gcaatatttt gagatatagg
     6661 atgtttagaa agttttacaa aattataaag ctcatttaaa tcaagcgctt tatctaaaaa
     6721 aacctcttta aattcaagct ctattttggt taaaataccc gttttatcaa acaccacaca
     6781 atcacatttg cttaaatctt ctatcacgct agaactttta aacaaaatat gttttttcaa
     6841 agctctacct aaagctacaa gattgctcac gggcgttgct aaagccaaag cacaaggaca
     6901 agcgataatc aaaactgcaa tcgcattaat taaagaaatt tcaaaactct cttccttata
     6961 aaaaaaccaa aaagcaaaac aaataaaagc aatcaataaa accgttctag aaaaataagc
     7021 caaaagacta ttaaccaaac tttcaagttt tgctttttta gagcttgcaa gttctaaaag
     7081 ctggataatt tgactgagtt ttgaatcttt gtaaagcttt gttgcttcat actccacact
     7141 tccatcaagc actatacaag ctgaaaaaat ttcatcttct ttttgtatga gttttggggt
     7201 attttctcca tttaaagaag aagtatctac gctcatttca ccacttttac aaatcccatc
     7261 gattaaaatt ttatctccag ttttaagcaa aattctatcc cccaaacaaa ccttttgcac
     7321 ttctttagag acaaattctt taccatcaaa aaccaaaact tcattttgca aaaaatcatt
     7381 aagcccatct atagtatcta aagcacgctt tttgctaaac atctcaagat atttacctat
     7441 aaaaacaaag caaattatca tcgccacaga gtcaaaatac acttccccta ccctaaaaaa
     7501 catggcccat aaagaataaa cataagccaa actcgctccg ctaatcacca atacatccat
     7561 atttaaacta tgcattttta aagttttaaa agcactttta taaaaatgag atcccgtata
     7621 aaaaagcaca ggagaacaaa ggataaattc agcaaaattt aaaatatcct tagtgtcctt
     7681 atccataccg ctaaaaaatc ctgcgtattt tgccactgct atccacatga tattcatcac
     7741 acaagctata gccacaacaa gcttagaata aaattccctt tttagtaaat ccgctttttt
     7801 tgaagccttg ctcgcatcat aagcactcgc tttatagcct atgttttcaa taagtcttaa
     7861 aatttgcacc aaagaaatgc tttgctcatc aaaaacaatg cgtgctttat ggtttaaatg
     7921 attaatatca agttctaaaa ttccttcttg tttggttaaa attttctcat taagccacac
     7981 acaagctgca cattctatac cgtgtatcat gagataaatt tcactaaatc cttctttggt
     8041 tttagtgata aactcatcat aatttttcat ttcattttga aaatttacag ggcttaaagt
     8101 ttgatttcca agcttttcat aaaactcatc taatccactt tcatgcaaaa tttcccaaac
     8161 gctctcacaa cctttacaac aaaaaatttt acccttatac tctatcattt gggcttgttt
     8221 ataatcaagt ttgcaatgtt cacatttcat aatcattctt taaaaaaata ttttttataa
     8281 ttataaacaa atttgacaaa aagtgcattt ttttattaaa atcacatttt acaaaaatta
     8341 ttctgctaaa tcttacgagg acttatggaa aaagaaaaaa aacaacatca aagaacccac
     8401 gttccagtgg aaggttataa aatcgaagaa ttaaaattat tagatttaga aaatctagtt
     8461 aaaatcgcta atgaatgtga aatcgaaaac ccaagagaat ttcgccgcca agaacttatt
     8521 tttgaaattt taaaagcaca aacaaaaaaa ggcggtttta tactttttac agggatttta
     8581 gaaatttctt ccgaaggtta tggcttttta agaggtatgg actctaatct tagcgatagt
     8641 gttaatgacg cttatgtttc aaattcacaa attaaaaaat ttgctctgcg tgtaggcgat
     8701 atcgttacag gacaagttag agaaccaaaa gatcaagaaa aatactacgc tcttttaaaa
     8761 atcgaagcga tcaattatct gcctttacaa gaagccaaag aaagaccttt gtttgataac
     8821 ttaaccccta tttttccaac agaaaaaatc aaactcgaat acgatgcaat gaagcttaca
     8881 ggtcgtgttt tggatctttt tactcctata ggaaaaggac aacgcgggct tatcgttgct
     8941 ccaccacgca caggtaaaac agagcttatg aaagaacttg ctactgctat tgcaaaaaac
     9001 cacccagaaa tgcatttaat cgtactttta gtcgatgaaa ggcctgaaga agttaccgat
     9061 atgcaaagat gtgtaaaagg cgaagttttt agttctactt ttgatttacc tgcttataat
     9121 catgtgcgtg tagccgaact cgtgatagaa aaagccaaaa gaatggtaga aacaggcaaa
     9181 gatgttatca tcttacttga tagtatcaca agactggcac gtgcttataa caccgcaact
     9241 ccaagcagtg gaaaagtcct aagcggcggg gtggatgcta atgccctaca caaaccaaaa
     9301 cgcttctttg gtgcagctag aaatatagaa aatggaggct ctttaaccat agttgctaca
     9361 gctttaattg atacaggttc aagaatggat gatgtgattt ttgaagaatt taaaggcaca
     9421 ggaaatagcg aaatagttct tgatagaaat atcgccgata gaagaattta tcctgcgatt
     9481 aatatcatca aatcaggaac aagaaaagaa gaattgctcc aaggcgtagc aaatcttcaa
     9541 aaaatttggg caatccgttc agcgatttct caaatggatg atgttgaagc gttgaaattt
     9601 ttatattcta aaatgcttaa aaccaaagac aatgtagaac ttttatctat aatgaacgag
     9661 tagaaaatgc ttcaagcttt agcgattaaa tacagaccaa aaacctttga tgaactcata
     9721 ggacaaaaga cagttagcgt aagtttaaaa tacgccctaa atcataatcg cttagctcat
     9781 gcttatcttt tttcaggact tagaggaagt ggaaaaactt caagtgctag aattttttct
     9841 cgtgctttag tttgcgaaca aggaccaagt gatactccat gtggcacttg caaacactgt
     9901 cttgcagcac ttgaaggcaa acacatagac attatagaaa tggatgctgc aagcaaccgt
     9961 gggcttgaag atatacaagc cttaattgaa caaaccaaat acaccccttc tatggcaaga
    10021 tttaaaattt tcatcattga tgaagtacat atgcttaccc cacaggctgc aaatgcactt
    10081 ttaaaaacct tagaagaacc cccaagttat gttaaattta tacttgcaac cactgatcct
    10141 ttaaaactcc cagctaccgt gctttcaaga acgcaacatt ttcgctttaa acaaattccc
    10201 caaagtgaaa ttttaaatca tcttaaagaa attttactta aagaaaatgt taaatttgaa
    10261 gaagaagctt taaaatttat agcaagaagt ggcaacggat ctttaagaga tactttaacc
    10321 ttgcttgatc aagccattat tttttgtcaa aatgaaatca gcattagtaa aattacagac
    10381 atgctaggat ttttagatcc tgaaaaaatc aaagcctttt atcaggctat tttaacaaaa
    10441 gacaaagaaa aagtttttgc atacttagaa gaattacaag actatgaagc ctcaagcgtg
    10501 attgatgaaa tgctttttta tttaaaagaa agcttttttg caaaaagtac ggaattttct
    10561 attttaattt atgaaagatt tttccgtatt ttatcaaaag ctaaaaatat gctttgcgat
    10621 gatgatggct ttacgctttg tgttatggct tttatgatga tggaagcaag ccatttaaaa
    10681 gaaattgatg cacaaatcca agaaatcaaa caagaaaata taacaaatat tacacctagg
    10741 atcacacctt ctcctatcat acctaatctt gagaaaaaaa tagaaaaaaa tgcttatgaa
    10801 atcttgcttg atagtattta tgatagggat tttgatcttg cagaatgctt taaacaaagc
    10861 acaaaattta ttagttttga aaacaatacc ttaaatataa gctcaaacgc acaaggacaa
    10921 aatcgcgata cactcaataa aggttttaaa ctcatacaag aactttttaa agctaaattt
    10981 ggagaaaatg ctaaaattaa tgtgcaaaaa gcactaacaa ttgatgaaaa taagcttcaa
    11041 tccttaactc aagaattacc aaacaatgaa aataaaaaca tagatattca aagttctatt
    11101 aatatgctta aagaaggggc caaaaaattt gacccacaag aagatcttaa agaggctctt
    11161 aaagattgtt ttggagagcc tagtatagaa aattaatcat catttttaag agagatgaaa
    11221 atcaaagcta aaaacatata agttaccaat cttatagtat caggtaaacc tttccaaacc
    11281 ttactcatcc acattccaaa ccattctgca acaactactt ggaaggcaaa aaaccataaa
    11341 atacacaagt taaagaaata atcccaaaaa atcttagcat tatgaaagct ttgagcatct
    11401 aaatttctag ctttaacata tcataagcac cttttttaga gctgttaagg caataaaagt
    11461 ttcaaaaaga ataattgcta tatagcctat atgataaatc acgggagaag taatagccat
    11521 ataaactaca gcattaccta aataaatcag gctttgtatc catactcatc acatgcgaaa
    11581 caaattggaa attagaattg taatctgtca catttccaaa aaccactata cctgctaacg
    11641 atacaacggt aagcaaaata ataatttttg aaaatctaat cattttgctt atgcaaaaac
    11701 atttttgttg catttatact cttttaataa tatattttag taatattaat tatatataat
    11761 atattattaa taaaaattaa atttttaaat tcttttaagt cttaaagaat taagcactac
    11821 agtaatagaa ctaaaacaca ttgcaagtgc tgctatatga ggacttaaag agataaaagg
    11881 tataaatcct gccgcgatag gaatgcaaag cacattataa ataaaagccc aaaaaagatt
    11941 tagcttaata ataccgcgtg tttttttagc aagtttaaaa catttaaaaa tcgctgataa
    12001 atcatctttt atcaagataa aatctcctgt ttttttagca agttcatttg cctttgaaaa
    12061 actcatactc acacttgcag cagataaagc cgccgcatca ttgatcccat ctcctacaaa
    12121 aagagttttt ttaaattttt gaatgatttg tagtttttct tcactcttaa gctgagcgtg
    12181 aaattcgtct atttgtaatt ctttggctat tttttctaca ttttttacat gatcgccgct
    12241 taaaataaaa gttttaagat tttgcttttt taaattgaac acaagctctt tggctccatc
    12301 ttttaaagca ttgcttaaca aaacaccgcc taaacacttt ttattcttag caaaatacac
    12361 cctaacatat tctttaaaag tatcaaaaaa gatatcactt tcttttgtgt caatttcatt
    12421 ttcgtgcaaa aactgtgcat tgcctacgag ataattatca ttatcttctt tgtattttat
    12481 accagaaccc acaatcactc ttccctcacc ctttaaatca aaaaaatgat ctttatgtaa
    12541 agccttagct ataggatgag agcttaaact ttcaatttga cataatttat caaaatcatc
    12601 tttagaaaga ttgtgtttaa aaatactcaa attttccttt gttaatgtac ccgttttatc
    12661 aaaaaaagca tacttaacta aggctaattt ttctaaagca gcaggatttt taataagaat
    12721 gaaatttttt gccgcatttg cacttgccac aaccaaagct ataggcgttg caagacctaa
    12781 agcacaagga caagagatca aaagcacagc acaagagtgt aaaaaagctg tatttaaatc
    12841 tgcttttagc acccaaaaaa caaaaactaa aaaagcaaaa aatattatac cccctacaaa
    12901 gtatttagaa atttgatctg ctaaatttgc caaaggactt ttgatacttc ctgcttcaaa
    12961 aactagattt ttgatttgtt ctaaagtact atccatggcc tttttgtttg ctttgatcct
    13021 taaagcacca tttaaaacta ctgctcctgc ttgaacttca tcgccttctt tttttaaaac
    13081 aggcaaaaac tccccattta aaaaactcat atcaagctct gcactcccta aaagcactac
    13141 tccatctgca acaatgcttt ctccttcttt taccaaaagt acatcgccac ttttaacaaa
    13201 agaacttgaa atttctttga tactttcatc ttcaagcaaa atttttgtct tttttgtgtc
    13261 tatattttct aaaattcttt gataatcttg tgccttaaat ttagccttac tttcaagata
    13321 ttttcctaaa agcacaaagg aaataatcat cattgcacca ctaaaataca aatcttcttc
    13381 tttaaaaatt tgcaaataca ccaaaaaaga atacacaaaa gcactcaaag tccccaaagc
    13441 tacaagggta ttcatatcta aatttttgct tttaaagcct aaaaaagcat gagaaaaaaa
    13501 gtctctccca caataaaata tcccaaaaaa actcaaagcc atttggatat tttgagaaaa
    13561 agaactttta acaaacattt caaaatacat aataatcaca ctcaaaacta tacttaagag
    13621 caaatttttt cttaattcta agtgtttttt tgccttgtat gcgttcaagc tttgttcatc
    13681 ttctaaaatt tcaaagccta aatttttaat ttttgcgatg atatccttgc gttttttttg
    13741 atcttcaagt aaaaaaaccc cgctagaatt cacataagaa acactagcat ctttaacacc
    13801 atcaattttt ttacaagctc tttctatagc attagaacaa ttaacgcaag tcattttgcc
    13861 tatttttata cgcaattctt ccattataaa cgctctacaa tctcaaaacc taaatcttga
    13921 aattcttttg taaaatttga tacttgattt tcttctaaat ttaaacttaa aattttttgc
    13981 tccaaatcca cttctatatt tccaaattca tcttcaagag aatttttgat caaatttaca
    14041 caattcatgc aattaacatt ttttacttta aatttcattt tcactcctta taggttgtat
    14101 ggtaatatgc ccgatttcaa attcatgcaa caacttatga gataaatcct gagatagttt
    14161 ttcaaattcc tttagattgc aaactcttac ttttaaatgc atagaggcta ctagcatttt
    14221 attagtgatt tgagtaatat gcaaatccac tacctcatcc acactaggat ttaaaagcaa
    14281 aacttgtctt actttttcta tatccacagg agaactttca agcaagacat tagcactttg
    14341 tttaagcaag ataatcgccc atcttaaaag caagattgat aatacaatag ctaaaatcgt
    14401 atctatataa acaatatcac taaaatacac cacaatccca cctataataa ccgctaaaga
    14461 acccaataaa tcgctcatca tatgcaaaaa agcggacttc atattgacat tttctaaatt
    14521 tgcaccctta aacatcatca aagcattaat cccatttacc aaaaagccca aaatagctac
    14581 aattatcatg gttttagcgt caatttcttt tggattgata aatttttcta tagcctcata
    14641 aatgataaat aaagccgata aaataatggt taaagcattg ataaaagcca ctaaaacttc
    14701 aagacgaaaa tacccaaagg tcttttgatg atcttgccat ttttctacag ctataatggc
    14761 taaaaaacta agagctaagg caaaaacatc agaaaacata tgcaaagtat cgcttaaaag
    14821 tgccaaagaa tttgaaagga ttgaataaat aaattgcaca agcatcatag aaaaagtcat
    14881 taaaagagaa atttttaaaa tctttttatc cacactcctt gcatcggcat gggaatgatg
    14941 atgttcatga gaatgttctt cgtgattatg atgacaagat ttgttagcta aaggctcgtg
    15001 tgataaaaat ttatacattt tatatccttt tttgcttgac attttaagat attaagctaa
    15061 aaaggatata aatatttgtt atttttataa aaattaaaag tcaaaaagct cgcctagcca
    15121 actttctttc tttttctttt tataatagtc attgtgctga tgataagctg agtcattata
    15181 tcttgactct tgtcttggag cttggttaaa atttgctgta ttagggacac tgcgttctat
    15241 gattttgtca agctctccac gatcaagcca aacgccacga cactttggac aataatcaat
    15301 ctcaactcca ctcctatcac tcataaccaa atctacatta caaactggac ataacataca
    15361 ataccttttt ttaaattttt gacttaaaat tataaaaaga aatattaaac aaatttacaa
    15421 caagttttaa tgtttttttg catgtctagt catcataaaa ctttgttcaa aaaatataag
    15481 caaggtaaca ctcactccta tagctagagc caaagtcaca gaaacagttg taaaaaaata
    15541 atcaaaaaat tgaactaaaa attcagactt agccttcaaa tcatcactgc gtataaaaga
    15601 aataagatac aaaatcgctt tataagcata aattccaggt atcataggaa taagagcagg
    15661 gaaagcgata atttcagcag gagttttgat gatttttgct aaaacaattc ctaaacatcc
    15721 tatgcaaaat gaagcaacaa aagttgcaat tgctaaagtt tgaaaatgaa aatattccac
    15781 caaggtaaaa cgaagtccat gtgcaattgc cgctaaaaga gcagataaaa taagggtttt
    15841 taaaggtgga ttacaagcat aagcaaagcc aaatcccgcc acagcagcaa aaaacatatc
    15901 tcttaaaata aattcaatca tcttaaaatc ccaaaatccg aaatactaag cgtcatgtaa
    15961 attccaagtg ctatacaaca aatcaaaata gccacgctga taatacggct aagccccatt
    16021 aaaatatgat cttttaatat atcaatcaca gaatttataa aaaatacccc tggtataaga
    16081 tacaagatac tagaacccaa agccacatca gaagtattgg tatatcccat atccagtcca
    16141 aaaaatacaa accatgatga gataaaagaa caaaggatgt attgaattct taaatcaatc
    16201 tttgctttag ttaaaatata tcttaataac aatcccacaa aagttgcaaa aaatactaaa
    16261 tttccagcac caaaatcacc accaaaaagc ctgcaaaaag ccgaatttgc catagaaaca
    16321 aataaaagat taagcaaata agaatgcttt ttttgttgag aaatttgccc aaaaacgact
    16381 tttgcttttt caagatcgta tttgtgatca tatatagccc agcttaaagc acttaaatca
    16441 aaaataagtt taaaattaac atgggcatga tgattgggta taacataagt tctttgaatg
    16501 gagttatcat ccatatctac aacatttaaa gtaatatgat gaaaaaagaa attgatattt
    16561 atctcatagc cataaacctc agctattctt cctacgcatt ttgccaccct agctgtataa
    16621 gttccagcac ctagcaaagt tttagtatat atgattaaaa aattagttaa tctttgtata
    16681 tcaggttttt ccatatttta ataatctttg attgaatttg ttataattat agcaaatttt
    16741 aaaataaata aggagaaaaa atggcaaaaa tcggtatagt tggtttaggt tatgtaggag
    16801 ctgctagtgc ttatagcata gttattcaag gaatttgttc agaactttac ttatatgata
    16861 taaaacaaga tttagctcta gctcatgcaa gagatttgga agatatgtca gccattcatt
    16921 tttcttatac aaaaattttt catgtgccaa atttagaaaa tttagcttct tgcgatatta
    16981 tcattttagc ttttagaaaa gaaagcttaa aagaattacc tagtcgctta gtagaactta
    17041 aaaacaatat cctcgaactt aaagacattg tcttaacctt aaaaaatgct aattttaaag
    17101 gcaaatacat tgtcgcaaca aatccaaatg acaccataac ttactacact caagtattaa
    17161 gccaattacc taaaaatcat gtttttggta gtggaacaaa tttggatagt tcaagactta
    17221 agaaattgtt agccaaagat ttaaacataa attcaaaaga tatttttgct tgtatgattg
    17281 gtgaacatgg agattctcag tttgcagcac tttctaatgc aagcgtttta ggacaaaatt
    17341 tattagattt ttataagcaa aaattaggca aagatttaga catacaagaa ctcgaaaaag
    17401 ccgtgattag cgagggatat ttcatctatg aacgcaaagg aaggacagaa tttggcatag
    17461 gaacttcttg tgcaaattta gccaaagcca tcctagaaga tagaaaaagt ttacatcctg
    17521 taagtgtggt ttttgatgat atagcttttt caatgcccgc tatcatagga aaagatggta
    17581 tagaaaaggt ttttgaatta aaattcaatg aaaaagaaaa aataaaatta gaaaattcaa
    17641 aacaacaaat caaaaacgcc atacaaagcg taaaagataa aatttaagcc tttttaaaag
    17701 gctttttgat tttaatataa attaaacttg ctaaaatcac aaaaacaatt ataatgatta
    17761 aaatttgagt taaataagtt ttaatcaact cttcattttg tcctatataa taacccaaaa
    17821 atacaagtat agccacccaa atagcactac caagtgcagt aaaaagtata aaatttataa
    17881 gtttcatttt taccaaacct gcaggcatag agatgtactg acgaatccct ggtaaaagac
    17941 gacaagtaaa ggttgaaaat tccccatgtt tgttgaaaaa ttcttcaaat ttagcaaatt
    18001 tggcttcgtt tataccaaaa tacttacccc attttaatac aaaattttta ccccaaaaaa
    18061 agcaaatata ataattaatc aaagccccta aaacagaacc taaagtccca ctaagtatac
    18121 aaagagtgat atcaagctcg cctttatgtg ccaaatatcc agcaggtatc ataacaactt
    18181 cacttggaaa aggtataaaa caactctcta aggtcattaa gataataata cccaaatacc
    18241 cccaagcact agccgtctca acaataaaag aaatgatttc ttgcatatta gccttatttg
    18301 aagaaaattt taaaaaattg tagcttaaaa gattaaacag taaaaagcgg ttttacaccg
    18361 ctttttttat ttacctgcaa ctgaaacttg atttggattg tctgctgcac gagcgatcat
    18421 gcactctttt aaaacagcag catcagctgg atcgctaact tttttattaa tccagcgttc
    18481 aacttgtttc attgtttttg actctggctc tggagcttcg tattttgcca tcaaacttgc
    18541 acaatcagcc aaagcaatga taggtaataa acttgcaaaa agtatttttc tcatcttttg
    18601 ctccttagaa ttttacatta tacattaaca tgatattatc agctcttgat ttttcttttt
    18661 tagctcccat taatggaatt ccacgatttc cccatttgtt ttggatattg gtatagctta
    18721 agcgtaagaa ttgatatcta tcaagttgat aaatcacata aacatcatga gctgttcctc
    18781 ttgtcattct tatattaagc ggatcattga tacttggacg gctcatagta taccagtatc
    18841 tacttcccca gaaaaactca taacctactt ttaaagcctt ggtaaaatca tagcgtccgc
    18901 ctacatgcac agcataacca tcttcttcat tgaattttaa attatttgct aaactactgg
    18961 cagcaggtat ccagaaagca ttagcattgc ttccattgta gtatcctaaa gaagcaaacc
    19021 aattaaaatt tgttccaaaa gctttgtagt tttcaaaatg gatatttgct atagtggcat
    19081 caccaagatt tttaacaccg gcaccaccaa ttaaattatt aattattgct ccaccatcaa
    19141 taggaagtga aaagtcgcta atataagcta cattaagaag taataagtta tcccccatac
    19201 cctctatagg aagttctcct tctactgcag catagtaaag atttgcatca gcatcttttt
    19261 gatcgctcat ccagtctctt accttaccct cttcatccca ttgataagtt ttaccataag
    19321 ctgcacggat ggctacctta tgatcttgta aactttcagg tttataagtg attactgctg
    19381 catcacctaa agcattaatt gctaaggctg gataagtgga ttgtcttaga gcattgtttc
    19441 taagattact tcctggacca tcggttcctg gctgtcttcc tatggttgca atccactcag
    19501 gtgtgatata gtagtcaaga taagctctat ctacataaag tacaggccca cttgttcttg
    19561 tatttcttcc tgcatctaag tcaagtggac ttccactcca acccatttga gaccaatttt
    19621 tagccataga taaacgacca tagaatttgg ttttatcatt aatatcagca ttcatattta
    19681 aatgaagctc attcatccat ttgttattgg cactataatc ttgtccgtca actttatagt
    19741 ttgtatttga aaccgctgtt gaaaactcaa gtccaaattt aaccttgctt aaagcagctt
    19801 gaaattctgt ttcatcggct ctatcattaa gatcagcaag ttcagctttt acagcttcat
    19861 tttgcttagc ttgagcttct ctttcttttc tgatttctgc aagttcagct tgaatttgtg
    19921 caagctgttt ttgaagcttg gttatttcat catctgtatt tttagcaaaa agtgaagatg
    19981 aaagaagaca agcacttaaa ataagtgaaa acttagtttt cataatcata actccttgta
    20041 attttgttac atttagtaaa ttaaaattgt gattatagaa aaaaaagttt aaaaaaaaat
    20101 tatacattaa tcatttttag ctagtcaaac ttatgactag ctttgtaaat attgtagttt
    20161 caaaaaagtt ttaaaatttt aaatttttaa attttatcgc aaatttttat gtctaaaatt
    20221 ttatctcctt ggcgtatgga gtctaaaact tctaaacttt cttcatcttt tggatcaatt
    20281 tgcccaaaaa cagtatgaac tccatctaaa tgagcttgag ggctgtgaca aataaaaaat
    20341 tgagagccac ccgtatcgcg tcctgcgtgt gccatagata aggttccacg ctcatgttta
    20401 tgttcttgat catcacattc gcaaatgatt tcatatccag gcccacctat accattgccg
    20461 tgtggacaac ctccctgtat gacaaaattt gggatcacac gatgaaaatt taaatcttta
    20521 taaaatccct cattaaccaa agtagcaaaa ttacaaaccg tttgtggagc ctcatcgcca
    20581 aaaagtttta gtttcattgt gcctttttca gtttctataa gagcaaattt gtattcattt
    20641 actttgcttg tgtcaattgt ttttatcatt atttctcctt aatctatatt tgtataaaca
    20701 gcttgaacat catcatcatc ttctaactta tctaaaagtt tttctatatc gctaagctgt
    20761 tcttcgctaa agcttacagg attgtttggt atatactcaa gccctgcttt tttaagaact
    20821 aaacccttag cttctatagc agaacttagc tcaccaaagg cagtgtaatc accgctaatt
    20881 actaactctt cttcattttg ttctaattct tcaagccctg catcgatcaa atcaagttct
    20941 aattcttcta aatctcctgc aaatttttca agatgaaaaa ccgcttttct agtaaacata
    21001 aagcctaaag atccattttg taaaacttct ccaccatttt tgctaaaaat ggctttaaca
    21061 ttagccacgg tgcgcgtagg gttatcgctc atacattcaa ctataaccaa agctccatgt
    21121 gcagcttttc cttcataatg aatgttttta atatctgcgc tatcttttcc acttgcacgc
    21181 ttaatagccg catctatatt atcttttggc atattatttg cttttgctgt ggctatagca
    21241 cttcttaatt ttggattcat atcaggatca gtgccacctt ctttagcagc tacttgtatg
    21301 gctttagcaa gcttaggaaa aagcttactc attttatccc atctagcctc tttagaagct
    21361 cttcggtatt caaacgctcg tcccataaat tctcactttc tttaaagatt tttaaactta
    21421 aaagtataaa ctaaaaaggc taattaaagc tttaaatggt atgattttac catttatttt
    21481 tgggaagaag ctttttgaat atcgcaaaaa aagaactttt tgttgcttgg tttttcttga
    21541 ttgctgctat tgtatttgaa gttttaggta ctagtttttt aaaaatggaa aatcaaattt
    21601 taggctatat atttatggct ttatttatag ctttttctta tttttttatg ggtaaggcga
    21661 ttaaaaaaat tcaagtaggc atagcctatg ctgtatggga acttttaggg attattctta
    21721 tacttttagt ttcttttata gtttttaaag agagtttaac cttgactcaa attctaggca
    21781 ttattctttc tatcgttgga attatcatga ttaatatagg cgaggttaaa gaataatgta
    21841 tatttttatc attgttttat cagcattgtt agatattgta gcaaatttat tgctaaaaaa
    21901 atcagatggt tttaagcata aaatttgggg cttggctgcg attatcaatg ctatacttgc
    21961 tttttttcta ctttcttttt ctttaaaata tgttccttta agcatagctt actcaacttg
    22021 gggtgctata ggcattatag gaacttgtct tggtggatgg attttatata aagaaaaatt
    22081 aaacaaaata ggaattttag gtatcattat cgtgataata gcagtatttt tgctaaatta
    22141 ttaaaacagc aaaatgctgt tttaatgttc cattttgttt tttgcttcaa tacccattaa
    22201 agaaaatgcg gttttaatac taagagcaac caaagaaaat aatttaagta aatcattttc
    22261 atttgcagag cctacaactt tattttcatt gtagaattta tgaaaatttg cagctaaatt
    22321 tttaagataa tcaggaattt tttgcaaagc tctagcctca aaagcatcat ttaaaatagc
    22381 ctttaaattc aaagcttcaa agagtaaatt tacaccatct tgatttaaac tttgtaaatc
    22441 agctttcatt acatcatcga tttttttacc agctttagca aatacttgat gaattctagc
    22501 gtgtgcatag ttgatataat acacaggatt agaactatct tctttttgca aatcactaat
    22561 atcaaattcc aaatgcgtat cgcatttttt gctcaaaaag atataacgca aagcatcact
    22621 tcctatctca tcaaccacat cgctcatcaa gataaaattt cctgctcttt tactcatttt
    22681 ataaggttct ccatctttaa gtagggaaac catttgtgct aaaataatct caagattatt
    22741 agagtcaaat cccaaaaatt ccatcgcagc tttcattcta gggatataac catgatgatc
    22801 tgctccccag atattaatac actttccata accacgactc attttatctt tatgataaac
    22861 aatatctgct gccaaataag tcccgcgtcc atcttcacgg ataattaccc tatctttttc
    22921 atcgcctttt tgcgaagaag caagccaaat tttaccttct tgctcgtaaa ttcctttatg
    22981 ctcttttaaa gattctaaag ttgcatttaa agcatcataa tacgatcttt cgcttacata
    23041 gctgtcaatt ttaatctttg cttgttctaa attttgttta atcaaaacaa gcattttatc
    23101 ttttgcccaa tcagccaaac tagggatatt ttcttggcta aaaaattctt taccaaattt
    23161 ttcaaaagct tcttttgcta aatccgctat atactcgcct ttgtaatatt gctctggata
    23221 ttcaacattt tcatgaagta tattttcttt cacacttagt aaaatagaaa gccctagtaa
    23281 ataaatttga ttacccgcat cattgacata gtattctgta tcgaatttat agcccaaatg
    23341 tcttgcaagt cttgttaagg tgtctccaaa aacagcgcct cttgcatgtc ctatgtgtaa
    23401 aggcccagta ggatttgcac tcacatattc aagcaaaaaa ctttcttgtt ttttttctcc
    23461 tttagtaaaa tcatttggat ttgttaaagc ctgatttgca agttcattta aaaaagtttt
    23521 ggaaattcta aaatttaaat acccatttac agcttcaact aattcaaaac aatcatgatt
    23581 ttgaaatttg ctcgctaagt cgctagcgat caacataggg gattttttta attccttagc
    23641 cagtgaaaaa gccaaagggg tagcaaaatg tgctaaattt ttatcctttg gattttcaag
    23701 cgcaaaatca cactctaaaa tctttttaat ttcattaaaa ataatacttt tcaaaagact
    23761 aaaccttaag ctttttttgt ttcgtctata cttgcatcag catttgtatt attagttgtg
    23821 tttttgtttt cttctatttt ttgagtattt tttgctactt catcatcatt attcatttca
    23881 tctttaaaag ttttaatacc tttgcctaaa ccctttgcaa gttctggaat tttttttgct
    23941 ccaaaaagca atacaacaat caataaaata atcaaccaat gacttggact tgaccaacca
    24001 cccattttat tctccttcat tccaaatatt ctgaatttgc cctagattct gccctttggt
    24061 tctaaattta tgggcgatta aaatcgctcg caatgcttca taactttgct ttaactcatc
    24121 gttaatgata agataatcat actcgctaag ctctttcatt tcatcactag cgttttgtaa
    24181 tcttttttct agttgtatta ttgtatcagt atttcgctta ataagtcttt tttttaactc
    24241 atctttattt tttgtagtaa taaaaacaga aacaatctta tcagccattt tttttctggc
    24301 tattttaaat ccttgcacat caatatcaaa aacaactatt tttccattat ctaaagcatt
    24361 ttgagtgtgc tttaaagaag taccataaaa attttcatgc actctagccc attctaaaaa
    24421 atgatcacta tctatacctt tttgaaattc ttcatgggat ataaaatgat aatgtattcc
    24481 atttttttca ccctctcttg gtttgcgagt tgttgaagaa atagaaaaat aaagctcatc
    24541 ttcaaattca tcaaaaagtt tttttaaaag agttgatttt ccagcaccac taggacctga
    24601 aatcaacaaa acaaaacctt gcaatttcaa tcctctttaa aactaatgtt tatatttata
    24661 ttcatattca tacccttaag agcagctttt aaggtatcat ctttaatact tgaagtgatc
    24721 gctcctgcta tgctttggct aagctcatta actatctctt cgctattatc atctttagtt
    24781 acatcactta ctataggctc ttcatttttt tctaagattt cctctccaag agcttcttgt
    24841 atatcacttt ctttcaatgt atcaaaatca cttatattta aatttggcac aaccacttcc
    24901 tcttcatttg ttcctaattc tttatcgtct aaaattggtt catctttaaa atcttctaag
    24961 accttgctac tattgtcact atcaatacca taatcaagct catcaagttg agctagttct
    25021 tctttgattt gatcttgagt actcaaattt gaagcaaaat catctatttc atcttgaaca
    25081 tcttcttcca caacaggagc aaactcctct aaattttcct ctgattcttc attatatttt
    25141 gcttgaccta aaaattcagc atcctcagga agatcatcaa aatccatttc tttttcttgc
    25201 tcttcaacct caggaagatc atcaaaatcg cttatattag cttgtaattc tttattatct
    25261 tctaaatctt catcattttt atcatctagc tcatctaaac taggctcagt atccaaagct
    25321 gtatgttctt ggcttaagtc ttctttttca ctttcgccat cttctaaagt taaatctaaa
    25381 tcaatttgag tgtcttcttg agtctgttct ttaattgttt catgttctaa attgtcatgt
    25441 tctaaattgt catgttctaa attttgagtt tctaaagttt tgtttgaatt atcatcttga
    25501 gattcgctaa gctcttcttg catttctaat gtatttgttt tagaatcgtc taataattct
    25561 tgcttttcta tttcttcatt tttatcatct tctttgattt ctaaatcttc atcattttta
    25621 tcatctagct catctaaact agactcagta tccaaagctg tatgttcttg gcttaagtct
    25681 tctttttcac tttcgccatc ttctaaagtt aaatctaaat caatttgagt gtcttcttga
    25741 gtctgttctt taattgtttc atgttctaaa ttttgagttt ctaaagtttt gtttgcatta
    25801 tcatcttgag catcatcatc aaaactcaaa tcttccattc cctctgaatt tatatctaaa
    25861 gaattttcat caggcaaatc atctaaattt aaattatcta aatccaagct tatatcagca
    25921 taaggatttt catcattgct taacattggc aaatcaatag atgtatgctt gttcgcatct
    25981 ttattattaa gtaaatttaa aaaatctgta ggtaaaaaag gtttttgtaa aatttgcgca
    26041 tctatatctt ctacattttg atttcgcggg gctaaaaaaa tcaatctatc gcatttttct
    26101 ttaagaattt ttaaaggtgc tggagtatca ctatctacaa caatcacatc ataattaccc
    26161 aaattttcac tataagcatt aagttcttca aaatcataag acattttttt agcactaagg
    26221 cttacaagtc ttgaaactac agggttttca tttaaaagta aaattttcat cactttaatc
    26281 ct
//
LOCUS       DARBBO010000012        25826 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.012, whole genome shotgun sequence.
ACCESSION   DARBBO010000012 DARBBO010000000
VERSION     DARBBO010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25826
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.012"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..903)
                     /locus_tag="SB854_000376"
     CDS             complement(<1..903)
                     /locus_tag="SB854_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG0956417.1"
                     /translation="MALLSVIIPFGLSKERPYIEERVIEKAKYFKSDENIEFIFVEGY
                     SSKNHELKNFIQANHHIYLKDMEQKAFSQGKCRNLGASCAHSNVLLFLDVDCYISLDN
                     FEKILKLIQIKNIAQNINALIVLPVVYLNKEANEKLKQYDEEFWDILIQEDLFIAKNT
                     WVKFFSPSSTSSIVINKHQFLRLGGNDENFIGHGYEDFDLFARILKACVSFEKMPANL
                     SYDARNWNFFDFKGFRSWFSLLGYEACFYGIYMYHFYHIEPNQNAYMQNKDKNHRLFY
                     KHLKNIKKHDLKPLQVFKAKGEKVL"
     gene            complement(903..1850)
                     /locus_tag="SB854_000377"
     CDS             complement(903..1850)
                     /locus_tag="SB854_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HEG0956418.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPEDVLITISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQSDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSNNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKTSDKPRFDFRAKEIMSTNPKVVDA
                     DAMASEAEEIMLKHKIKEIIVGKEERVIGIIQLYAIGNV"
     gene            complement(1860..3518)
                     /locus_tag="SB854_000378"
     CDS             complement(1860..3518)
                     /locus_tag="SB854_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEG0956419.1"
                     /translation="MKKILILLFSCILCFGAVDISQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLAVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVNGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSENITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     DIDMKPGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            complement(3520..4638)
                     /locus_tag="SB854_000379"
     CDS             complement(3520..4638)
                     /locus_tag="SB854_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HEG0956420.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIVWFIMIFVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLGSTSTASEDLNYLKGYIESSDMLKILDGKIKLKSL
                     YQEQHIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLQVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     EAKASLVAQIETNLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            complement(4638..5300)
                     /locus_tag="SB854_000380"
     CDS             complement(4638..5300)
                     /locus_tag="SB854_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0956421.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGYNGAG
                     KSTLMRLLSGAELPDSGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKE
                     LQEKVKFVEDFAEIGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQG
                     KV"
     gene            complement(5297..6079)
                     /gene="kpsM"
                     /locus_tag="SB854_000381"
     CDS             complement(5297..6079)
                     /gene="kpsM"
                     /locus_tag="SB854_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide transporter KpsM"
                     /protein_id="HEG0956422.1"
                     /translation="MLNVIHALFFRELKTRFGKNRYLGYIWVVGEPMSVVLLVTIIGT
                     VIREYHHQVMPEGISIFMFLISGIMPFFMFRSIVTQLMNGIGANLSLFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRLDVFPVHLLGVLFCIFLLICSAFALGICFA
                     IVWHFVEPLRTLLAYFSIVFYWSSGIIFPTWLTPRPLLDIFYYNPLLHIMELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAAKKE"
     gene            complement(6151..6558)
                     /locus_tag="SB854_000382"
     CDS             complement(6151..6558)
                     /locus_tag="SB854_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956423.1"
                     /translation="MDERILEFIKNEQLLSWAVIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKESKIAFLKGVQAKAEFKMASKEQMKIYFSKFPFAK
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            6637..7200
                     /gene="ciaI"
                     /locus_tag="SB854_000383"
     CDS             6637..7200
                     /gene="ciaI"
                     /locus_tag="SB854_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HEG0956424.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSVSYANNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDENHQNAIMNNFTNKLSDLLKQNQTDDKDINASMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            7237..7926
                     /gene="dut"
                     /locus_tag="SB854_000384"
     CDS             7237..7926
                     /gene="dut"
                     /locus_tag="SB854_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HEG0956425.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFTWKHWKNISSLTNWENVRIEIVDIWHFILSLLLEEYRDKNNKDFKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            7928..8641
                     /locus_tag="SB854_000385"
     CDS             7928..8641
                     /locus_tag="SB854_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HEG0956426.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNTNEVSTLKTIFEIFKIFIKFIGILLLCTLALFLPFINIFVYYLAF
                     YYLFHKLLMIDVTSTILDKESFKNFHSDFSPLEFKFSTLCFYLLSSVPLLGLFLQVFF
                     VIFLTHLSYQRILKLKAKA"
     gene            complement(8624..9589)
                     /gene="tilS"
                     /locus_tag="SB854_000386"
     CDS             complement(8624..9589)
                     /gene="tilS"
                     /locus_tag="SB854_000386"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HEG0956427.1"
                     /translation="MQIKDEILSLLKRGKNLLAFSYGSDSSVLFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQ
                     GYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRSNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKRSFSYLDEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALAYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(9579..10898)
                     /gene="rimO"
                     /locus_tag="SB854_000387"
     CDS             complement(9579..10898)
                     /gene="rimO"
                     /locus_tag="SB854_000387"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HEG0956428.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVLIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRISVFAYSKEEDTAAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGKSSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            10972..12069
                     /gene="prfB"
                     /locus_tag="SB854_000388"
     CDS             10972..12069
                     /gene="prfB"
                     /locus_tag="SB854_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEG0956429.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLANSENDTETLEALFNDA
                     PKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWTSILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            complement(12226..12432)
                     /locus_tag="SB854_000389"
     CDS             complement(12226..12432)
                     /locus_tag="SB854_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002927569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956430.1"
                     /translation="MFDLGNQEIMKKYPNYKLYDYTSVRTISDINNPEGKIKEMKRDL
                     EIDKTPYSNYVFLLNPNDKKTIKL"
     gene            complement(12662..13780)
                     /gene="truD"
                     /locus_tag="SB854_000390"
     CDS             complement(12662..13780)
                     /gene="truD"
                     /locus_tag="SB854_000390"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEG0956431.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILETFIHENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQG
                     FTNYFGYQRFGKFGDNYKEGLEILRGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
     gene            complement(13749..14570)
                     /locus_tag="SB854_000391"
     CDS             complement(13749..14570)
                     /locus_tag="SB854_000391"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEG0956432.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAIIDDWCFSKDLFFENVHFKREWF
                     SLEQIATKAMLVNISDAISMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GTLKPNHVFIKPKLRASFFYEIAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIKTIAKKHGVKLNIFGKAVKGKYEFRGREHHF"
     gene            14657..15730
                     /locus_tag="SB854_000392"
     CDS             14657..15730
                     /locus_tag="SB854_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HEG0956433.1"
                     /translation="MKKLELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQD
                     DDIYFDFDKDEDTYIVVNKQIIPLFTPLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKN
                     DFLDKYKYLEKFGDEEDKKLYAKYDYLYYASEILDYLPEYMGDGVFYLASKMIEKYPE
                     KKIEILKTLADKEKGIFYHLENKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNA
                     FDNEIKELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNP
                     TLSYKIAADIVLDAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILSRFE
                     FLALIEGIQAPSLKNHTLKVSLI"
     gene            15727..16110
                     /locus_tag="SB854_000393"
     CDS             15727..16110
                     /locus_tag="SB854_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG0956434.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIYTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            16103..16786
                     /gene="rsmD"
                     /locus_tag="SB854_000394"
     CDS             16103..16786
                     /gene="rsmD"
                     /locus_tag="SB854_000394"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEG0956435.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPPKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALMAAEA
                     LSNHALKAYAIELDAKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDTREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYAS"
     gene            16845..17891
                     /locus_tag="SB854_000395"
     CDS             16845..17891
                     /locus_tag="SB854_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HEG0956436.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNNDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            17891..18232
                     /locus_tag="SB854_000396"
     CDS             17891..18232
                     /locus_tag="SB854_000396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956437.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKSKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            18295..18492
                     /gene="flgM"
                     /locus_tag="SB854_000397"
     CDS             18295..18492
                     /gene="flgM"
                     /locus_tag="SB854_000397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HEG0956438.1"
                     /translation="MINPIQQSYVANTALNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            18535..18969
                     /locus_tag="SB854_000398"
     CDS             18535..18969
                     /locus_tag="SB854_000398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HEG0956439.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            18979..20805
                     /gene="flgK"
                     /locus_tag="SB854_000399"
     CDS             18979..20805
                     /gene="flgK"
                     /locus_tag="SB854_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HEG0956440.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAVESIVRLHDEYSYYKLKGASTQLEYTKYMASTLQEIAQRFP
                     DLQNTGILQDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYKDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNDNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLSGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            20822..21586
                     /locus_tag="SB854_000400"
     CDS             20822..21586
                     /locus_tag="SB854_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
                     /protein_id="HEG0956441.1"
                     /translation="MKNFIHLKAKLDFLANQKNTNHSLFETPDPLQIAKIHNDEFIAL
                     ICALFAYGNAKNIVNFLKKLDFSLLNLQEKQIKKELKNLKYRFQNEKDIQEIFITLSR
                     LKNEISLYELFYQAYQERENTTDAILAFMQKIKTLNSYSSYGYDFFFGKIWQNTPTSP
                     LKRYNMYLRWMVRKDELDLGLFTKIHTKDLLIPLDTHAHKISLTLGLLKRKIYDYKSV
                     LELTQNLKKLDANDPIKYDFALYRLGQSKEIDKFKE"
     gene            21590..22354
                     /locus_tag="SB854_000401"
     CDS             21590..22354
                     /locus_tag="SB854_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HEG0956442.1"
                     /translation="MGFEHLNTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFFTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIIVGATIIKVAWDYFS"
     gene            complement(22347..23528)
                     /locus_tag="SB854_000402"
     CDS             complement(22347..23528)
                     /locus_tag="SB854_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEG0956443.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYLMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGASLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFSCDFLFLKVPLISRLIIYNQNYYFFMVFSLLLKNGISISK
                     AFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRL
                     EVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNF
                     N"
     gene            complement(23525..25084)
                     /locus_tag="SB854_000403"
     CDS             complement(23525..25084)
                     /locus_tag="SB854_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HEG0956444.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLACAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(25074..25661)
                     /locus_tag="SB854_000404"
     CDS             complement(25074..25661)
                     /locus_tag="SB854_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG0956445.1"
                     /translation="MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKY
                     NKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKELEEVKAVQENTHISKIE
                     IDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
                     LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
     gene            complement(25665..>25826)
                     /locus_tag="SB854_000405"
     CDS             complement(25665..>25826)
                     /locus_tag="SB854_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0956446.1"
                     /translation="NKCLKFLQKISQGNLRYIDKTLKSFYEINSFFDKNKSQEYILKL
                     SALENGLLR"
BASE COUNT         9298 a         4343 c         3466 g         8719 t
ORIGIN      
        1 taaaactttt tcacctttgg ctttaaaaac ttgcaaaggc tttaaatcgt gttttttgat
       61 attttttaaa tgcttataaa aaagccgatg attcttatct ttattttgca tataagcgtt
      121 ttgattgggt tctatatgat aaaaatgata catataaatt ccataaaaac aagcctcata
      181 accaagtaat gaaaaccaag atctaaaacc tttaaagtca aaaaaattcc aatttctagc
      241 atcataactt aaattagcag gcattttttc aaaactcaca caagctttta aaattctagc
      301 aaaaagatca aaatcttcat aaccatgccc gataaaattt tcatcatttc cacccaatct
      361 taaaaactga tgcttattta tcacaatact tgaagtagaa cttggggaaa aaaattttac
      421 ccaagtattt tttgctataa ataaatcctc ttgtatcaaa atatcccaaa attcttcatc
      481 gtattgtttt aatttttcat tagcttcttt attaagatac accacaggca aaactatcaa
      541 agcattgata ttttgagcaa tatttttaat ttgaattagt tttaaaattt tttcaaaatt
      601 atccaaggaa atataacaat ctacatccaa aaacaaaaga acatttgaat gcgcacaact
      661 tgctcctaaa tttctgcatt ttccttgaga aaaagctttt tgctccatat ctttaagata
      721 aatatgatgg tttgcttgga taaaattttt aagctcgtga tttttagatg aatatccttc
      781 aacaaaaata aattctatat tctcatcact tttaaaatat tttgctttct caataaccct
      841 ttcttctata taaggacgct ccttacttaa gccaaaagga ataataacag ataaaagagc
      901 cattaaacat ttcctatagc ataaagctgg ataatcccta taaccctttc ttctttccct
      961 actataattt ctttgatttt atgttttagc atgatctcct ctgcttcact tgccatagca
     1021 tcagcatcga ctactttagg atttgtactc atgatttctt tggctctaaa atcaaatctt
     1081 ggtttatcgc ttgtctttaa agcacgacgc aaatccccat cagtgatgat acccactaat
     1141 ttttcatttt caagtaccac acaaagccct agctttccac tagtcatcac atcaacaaga
     1201 tcgttaaatt cagtatcagg atgcactata ggaaggttat ttgaaaccat aagatctttt
     1261 accttggtta aaagcttacg ccccaaactc ccccctggat gaaaaagggc aaaatcatca
     1321 ggcttgaaat ttcttacctt catcaaagca gcagctaaag catcccccat aaccaaagtt
     1381 gcggttgtcg aagacatagg agcaagctgc aaaggacaag cttccttttc cacagctata
     1441 tttaaaaata tatcgctttg ctttacaagg gtggaatttt ttttaccaca cattactata
     1501 agtggaattt tacgcttttt tatagctgga atgattttta aaatttcttc agtttctcct
     1561 gaatttgaaa tagtaattaa aacatcttca ggagttagca ttccaagatc tccatgcaaa
     1621 gcctctcctg gatggatgaa aaagcttggc gttcctgtac ttgctaaagt agctgctatc
     1681 ttagcaccta tatgacccga tttacccatt ccactgacta tgcaacgccc tttggtattt
     1741 agcatcaaat tcacagcttg attaaaattt tcatctaaat ttttagccaa atccaaaata
     1801 gcttgtgctt ctttttcaaa gacttctttg gctatttcaa gagtattcat ttttaaacct
     1861 taaagattaa gcacaacatt ggttgcgata gcaatttgat aaagaatttg agttaacatt
     1921 gaaaaaattt gcaaattctc actatctact tttggcaata ccaacacaga atcgcctggt
     1981 ttcatatcta tatcactatg atatttttca gcttttccat tgcttcgtat caccaaaact
     2041 tttgaagtat ccgctctttc tccataacct cctgcaagat tgatataata tcttaaatct
     2101 ttgcccttat catacacaaa agctccaggt aaagaaacct caccttgaac tatgatgaga
     2161 ttattcttac ttggtacatt aatagtatca ccgtcttcta aaataaccga attataagac
     2221 tttggattat caatgacaat ttgaccctta ggctctactt gcttagctct ttggataaat
     2281 tctaaaatcg tttttgcctg ttgagctctt atagctgcac cttgagctgt aacagaacca
     2341 ctagttaaag ctagagtttc aagctcttta agctgagcat tgataagttc tttttgagtt
     2401 ctagctacac tttttctaaa cacttgtaaa gcttgcatgt ttgattgtgg attagcttta
     2461 attaatttag aaatatcttc taaagtcgtt cctttaccca caactaaagt ttttaaacca
     2521 ttatgctcgc catttacact tatagttata ttttcagaaa catactcagg gtgaaattct
     2581 acctcatctc ccgttctaag taaaactttt gaaaattgca ttttattata agcactgaca
     2641 tcaagtttat gatcttcacc ataacttttt acgatagcat tagtcacgat aggtttagca
     2701 cctgatactc tagctaagtc agctaaagtt ttaatatcat ttgaaagttc aaaacgaaaa
     2761 ggtctttgca catcaccgtt aacaaaagcg taattttgaa catttcctac taaaataaca
     2821 tctccgcttc taaaaggaaa aagatccatt tgtcctttta gcaaaaaatc atataaatcg
     2881 atatttttta tcacgctgtt attacgcaaa atttgaatat ctctaaaact tccatattct
     2941 aaatttatac cccctgcttt atcaagatac tgaatcactg aatccgaact aagtccttga
     3001 taaagtcctg gagcattaac acttcctgtt acaaaaacac tgacattttg ataagcattc
     3061 atatctgcat aaacaaaaac attgctttta tagattttat taacacgtgc ttttataaca
     3121 cttacaaggg cactattttt cacgcctagt aaatttacag ctcctacttt agggataaaa
     3181 atatttcctt gagaatccac cgctaaaact tgcgaaaact caacagctcc ccaaatttta
     3241 agactgattt gatcaccaac tgcgatctta taatctgggt tataaactct ttgattgtaa
     3301 tttttaaaat ttccattaaa aagatgagca ccgaatacta aaatttgatg aatttttgta
     3361 agattatttt ctttatttgc tatatcataa tttgaactta aattttgatc tatgctagtt
     3421 gtagtagaac cttgatcctc tgctgaaatg atttgtgaaa tatccacagc tccaaaacat
     3481 aaaatacaac taaaaagtaa aattaatatt tttttcattt taatacttat gctcctctat
     3541 tatcatttta ataaatttaa caatcccaaa aatcaaagat aatacaataa atgctgttaa
     3601 aatatcataa attctttcag gatattttgc gctttctgga atatctggac tttgaatgat
     3661 gacaagttgt tttatttttc ttaatgcttc tattctagca ctttcataag cttttaaagc
     3721 tgcttcataa gctttttgcg caaaagtagc ttctatagtt agatcttgaa atttagcagc
     3781 caaatcatta agcttttgag aagaattgtt agctgaaatt ttagattttt cccttaaaag
     3841 ctgtttttta atcgcttcaa tttctgcttt aagtgctact acttcaggtg ctgcatcatt
     3901 catatagctt tgtaaagtta aaagtttagc ttctttttga gctaaattag tctcaatttg
     3961 cgcaaccaaa cttgctttag cttcagcttg tttcaaggga tcaaaaaccc catatttatt
     4021 ttgaaaagca atcaaatcat tttgtgcttt ttgatatcgt tctttgtatt tttgtacttc
     4081 attttcagca aaagccattt gttctctagc tgctttatga gagatttcgt tgataaactt
     4141 ttcgctttct tgcataatag tttgagcaat caaatgagct gatttaggtg taaaaccttc
     4201 tacttctacc tgcaaaagct tagtagtttc atccgtatgc accttaactc ttgcttggta
     4261 atatttaaga taagattcta tcgaacttga atcccaaatt ttaaaaggca aatctatatg
     4321 ttgttcttga taaagacttt taagtttaat tttcccatct aaaattttta acatatcact
     4381 tgattctata taacctttta gataatttaa atcttcgctt gctgtagaag tactaccaag
     4441 caaagacaaa attccacttg tttgagcact ttctccactt gttgatctaa catctaaaat
     4501 catcgtgctt acatatcttg gtgctgcaat caatgtataa taaatcacaa caaaaatcat
     4561 tataaaccaa acaattttaa aagaatcaaa tatacttaaa tctttgattt tttctaataa
     4621 agttttattt tcttccatta aacttttcct tgatatacag ctattccttc atctacatca
     4681 tcataaaccg taatttgtcc atttttcata taaattattt tatcacacca ttctttaatt
     4741 tcagctacat tatgagatac cataatcacc tttgatttgc ttaatctttc tctatataat
     4801 ttcacgcttt tttccctaaa agcaggatct ccaacagctc cagcctcatc gatcaaataa
     4861 taatcaaaat caaaagccat actaagtcca aaagctatcc tagcactcat tcccgaagaa
     4921 taagtcttca taggctcatc aaaaaatttt cctatttcag caaaatcttc tacgaatttt
     4981 actttttctt gaagttcttt acccttatat ccatacaccc tagctacaaa tttagcatta
     5041 tctctggcag ttaaagaacc ttgaaaagct ccatttaaac ccaaaggcca agataatttt
     5101 ttattagtaa ttatcttgcc actatcagga agctctgctc cgcttaaaag tctcatgaga
     5161 gtggacttgc ctgcgccatt atatcccatt aaacctatgc tacaattttc aggaaattca
     5221 aaagtaaaat ttttaaaaac ataatgcctt ccaccactaa ataaaggata agatttagtt
     5281 agattaatta gctttatcat tctttttttg ccgccgttag agcttgtcta ttatagtagt
     5341 aaataaaaag ccctataaat aaaacaagta aaatccaaaa tatagcataa aaataactat
     5401 attcatcttg caaaggataa ttttcaaaaa aattaaatct taaaagctcc attatgtgaa
     5461 gcaaaggatt gtaataaaat atatcaagta aaggacgagg agttaaccaa gtgggaaata
     5521 taatcccaga actccaataa aatactatac taaaataagc taataaagtt cttaaaggtt
     5581 ctacaaagtg ccaaacaata gcgaaacaaa tccctaaagc aaaagctgag catatgagta
     5641 aaaaaataca aaataaaact ccaagtaaat gaacaggaaa tacatcgagt ctaaagaacc
     5701 accctgcaaa aaaaagcaca gtgataaaaa tcacaaaata aatacaaaac tcgagtaaag
     5761 ttctagcaat aaatacatgt ataggtttta caggtttata ggcaaacaaa gataaatttg
     5821 cccctattcc attcataagc tgagttacta tacttctaaa cataaaaaaa ggcataatgc
     5881 ctgaaatcaa aaacataaaa atagaaattc cttcaggcat aacttgatga tgatattccc
     5941 taataacagt tcctataata gtcaccaaaa gtacaacact cataggctct ccaactaccc
     6001 atatatatcc aagataccta ttttttccaa atctagtttt taactctcta aaaaataaag
     6061 cgtgaattac atttaacatt tattttctat acctaacaat ttacataaac tataatcata
     6121 actcattttt ttaaacaaaa tcataaaaat ttatttttta caaaactcaa gctttttact
     6181 aagtcctaaa gcattgttag taaatttaag ccaaaaaagc tctaaggcat aaatttttgc
     6241 acttttatca agtttagcaa agggaaattt agaaaaataa attttcattt gctccttact
     6301 tgccatttta aactcggcct tagcttgcac accttttaaa aaggctattt tactttcttt
     6361 ggctatatta agtgctatac ttgaattttc actggctaat cttatatgct tagtatcttc
     6421 atgagaagcg ataataaaag ctaaattctt ctcatcaaaa gcataaaaag cactagctgt
     6481 ataaacacct ttttcatcaa tcacagccca agataaaagt tgctcatttt ttataaattc
     6541 taaaattctt tcatccatga ttataaaaat tatactaaaa tatttttaaa aataaccgat
     6601 tttatatttt ataaactata aatataaggg gaagaaatgc aaattgatgc tagcaaaaac
     6661 caaagttttt cgatggatta tacaacaaaa agtggcaaac atttagcctt atctatgtat
     6721 gacaatcaaa gcgtgagtta tgcaaataat gaagaaggta aaactcttaa tcttaagcgt
     6781 cagtatggct ttagctttac ttttgaaggc tctaagctca cacaaaatga tcttgatgag
     6841 attaaaaatg ctatgaaaga agttgaacct atgatcaaag actttttagc aaattctaaa
     6901 gtcggagagt taaagccaaa agaaattata gaatcagcta tgcaaatggc aaatgttcta
     6961 ccaacaccaa atgatgaaaa ccatcaaaat gctattatga ataattttac aaataaactc
     7021 agtgatttac taaaacaaaa tcaaacagat gataaagata tcaatgcttc catgcttgaa
     7081 gatagcaaaa aacttcttga tgaagtttta gaacaaatga aaaaacaact tgaaaaacag
     7141 caagaaaaag ccaaggaaaa tcaagataag acagatgata gtttaaatct ttacgcttaa
     7201 atcatataat attaaaaatt atcaaggagt ttttaaatga caaatatcga aattttagaa
     7261 aatatgctca aactccaaca aaaactcaac gatgaaacaa acggcttaaa ttgggaaaat
     7321 ggctacacca aagaaggaaa actgatcagt tggagacgct gtatttatat ggaatgtgca
     7381 gaacttatag actcttttac atggaaacat tggaaaaata tttcaagtct aacaaattgg
     7441 gaaaatgtgc gtatagagat tgtcgatatt tggcatttta ttttaagtct tttacttgaa
     7501 gagtatcgcg ataaaaacaa taaagatttc aaagctatag ccacagaagt taatgctgta
     7561 agcgtgtttc aagatttttg caaagaagaa gaatacccta atgagggtga tatttatggt
     7621 attttaaatg atatagagct tattatccat aaatgcagtg gttttggatt taatcttgga
     7681 gaattacttt caacctattt taccctagct attaaatgtg ggctaaatct tgaaattctt
     7741 tataagacct acataggtaa aaatgtttta aatattttta gacaaaacaa tggttacaaa
     7801 gatggcagct ataaaaaaac ttggaatggc aaagaagaca atgaagtttt agctcaaatt
     7861 ttagaacaag agcttgattt tgatactatt tataaaaaac tagaagaatg ctacaaaaag
     7921 gcataatttg gatattttaa aacttgcaat caaagatttt ttaagtctta aatttttaaa
     7981 atttgcctta attcctttga tttttagcct tatactgatg ctttttttag gagtacttgg
     8041 cttttcggcc ttgcttgatt attttaattc tttatttagc gttggagaag attcgttttg
     8101 ggcgtggttt tatgctcttc attttgtaca aattttaatc accatcataa gttttttatt
     8161 ttcaggtttt attgttgttt ttgcttcggt ttttttagcc ctttttatca cttcttttct
     8221 tactcctttt atcgctaaag aaatcaacca aaaatattac cattatgata atacaaacga
     8281 agtttcaacc ttaaaaacta tctttgaaat ttttaaaata tttataaaat ttatagggat
     8341 tttattgctt tgcaccttgg ctttattttt accttttata aatatttttg tatattatct
     8401 tgctttttat tatctctttc acaaactttt aatgattgat gttacaagca cgattttaga
     8461 caaagaaagt tttaaaaatt ttcattccga tttttcgcct ttagagttta aatttagcac
     8521 tctttgtttt tatctactct catcagtacc acttttagga ctttttttgc aagtattttt
     8581 tgtgattttt ctcacacatt taagctatca aagaatttta aaactaaaag ctaaggcttg
     8641 aaatatcgat tttatgatta tataaataag ctcttaaaag tcttggaatt ttagctattc
     8701 tacactcttc tttgaaattt ttaggtaatt tttgacaagt ttcatactca aaaacaatag
     8761 cttgttcgtt tttatatgca agtgctattt taccacctaa aacacaatca ccctttaaaa
     8821 gctcttttct ttgtgccgtg cttaaaagca aacctttcat tttcaccgct ctagcaatca
     8881 agctttcatt tttagggcaa ataagaagtc cttgaatttc tttgatattt tcaaaatcat
     8941 aaagtttttt cctgtcttca tcaagataag aaaaacttct ttttaaaccc tgatgaaatt
     9001 cactcacaaa ggcattagag aaattttttc ttatataatt tctaaaatat ttttcatttt
     9061 cattactttc atcatggaaa taaaaaatat ctttttcttt taaaaaagat gaaatttcat
     9121 ctttacttat aaagagtaaa gggcgtaaaa gtgtataatt tgagcgtttt tcacactctt
     9181 gcatacctaa aatttcagcc aaacctgcgc ctcgtgaaag ttgcatcaaa aaccattcaa
     9241 attgatcgtt taaatgatgg gctaagataa gatggtcata accttgctca agacaaattt
     9301 tttcaaaaaa atcatagcga aaatctctgg cttttttttc aaagttactt tgaaatttag
     9361 gagcgtgttt tatgaaaatt tttttatgaa attttaaagc aagttctttg gcttttaact
     9421 cttctaaatc actatttttt ctagttttgt aatttatcat cacaagatca aagtcgatct
     9481 tttcttgcat taaaagataa aaaagcacac tagaatcact tccataagaa aaagcgagta
     9541 aatttttacc cctttttaaa agggataaaa tttcatcttt aatttgcatc tacttttctt
     9601 aaagccttag caaggagctt tttatcaagg ttttgtaaaa tttcacattc ataaatttgc
     9661 cccatttcta aatttccaca ttcactttca ttgataagaa tttccccatc aatctctcta
     9721 tcccatctta aatctttagc tgcgatgaaa aactctccct cgctactttt tcctgtgcaa
     9781 actactaaac gcttttgccc tacttctttt tcaaaacttt tttctatgac ttcatcaaca
     9841 attttttcta tgattttaag ccttttattg atcactttaa aaggcacttg ctccatatca
     9901 aaagcagccg tatcttcttc cttagaatac gcaaaaacgc ttatcctatc aaaaccaaaa
     9961 tctttaacaa actcacaaag ctcttcaaaa tccgcctcac tctcacctgg atgtcctacg
    10021 ataaagcccg tgcgtaaaaa actatttggc gcacttttca ttaaatttag catttcttta
    10081 agtcttgtgc tatttgcccc acgcttcatg attttaagca tattatcact tatgtgctgc
    10141 aaaggcatat caaaataatt tacaaaaatt tcagaagcta taatgcgttt gatcaaagct
    10201 tcactcgcgc tcgtaggata aagatataaa attctagctg ctcttatgcc tttgattttt
    10261 tccacctcat cgattaagcg tataagccca tctttttcac ccttatcaaa caaataagaa
    10321 ctcgtatctt gtgcaataaa agaaaagtcc ttataacctc tagctaccaa atctttaagc
    10381 tcagctataa tgctacttat ctcgcgagat tttaacttgc ctttaaaact tgggatagca
    10441 caaaaagagc atttttgatt acaaccttcg gcgattttta taaaagcatg ggaatttgaa
    10501 cctgtgataa tacgtttaga attttcactt tgcaaataag tcgaatttga aaataaattt
    10561 gtttttttaa gtatcatttc atcgattctt tcataatcac ccacacctgt gaaaagatca
    10621 acctcaggaa gttctttcat aagttcttcg cggtaacgct gcattaaaca acccgtaacc
    10681 accaaaagag aatctttttt tctttgttcg tgcaaatcca aaatcgcatt aatactttct
    10741 ttttttgcac tatcgataaa accacaagta tttacgatta aaacatcagc tttgcttggt
    10801 tcatcgcaaa gttcataagc actaaggcgc cctagcatga tctcactatc gactaaattt
    10861 ttattacaac ctaaagacat aagataaagt tttgacattt ttttcctata ttaaagtttt
    10921 cttttgatat aatttttgac tttaaaaata taattatagc aaagaaattt tatggataat
    10981 tacgaattta gcgaactttt aaaaacttta aaaaacaaag tcggcaacat agcctccatc
    11041 atcaagcctg aaaatatcca aacaaggctt aaagaaatcg aagagcttga aaattctcct
    11101 tctttttgga gtgatgttaa acaagcagga atcataggta aagaaaaaac taaaatcacc
    11161 aatctactta aaaactatga aaatgctttt aatgctctaa atgacgcaag cgaacttttc
    11221 gatctggcca atagcgaaaa cgatacagaa acacttgaag ctttatttaa tgacgcacca
    11281 aaacttgaag ataccatcac aagtcttgaa atttccatgc ttttaagcgg ggaaaatgat
    11341 ggtaaaaatg ccattgtttc cattcaccca ggtgcaggtg gaacggaaag taatgactgg
    11401 acaagcatac tttatagaat gtatttaaga ttttgtgaaa gagaaggttt taaagtcgaa
    11461 actttagact ttcaagaagg cgaagaagca ggacttaaag atgtgagctt tttagttaaa
    11521 ggagaaaatg cttatggtta tttaaaagct gaaaatggta tccatcgttt ggtaagaact
    11581 tctccttttg atagtgcagg acgccgtcat acaagctttt caagtgttat ggtaagccct
    11641 gaacttgatg atgatataga aattgaaatc gaagaaaaag acataagaat agattattac
    11701 agagcaagcg gtgcaggcgg acaacatgtc aataaaacag aatcggctgt gagaatcacg
    11761 cattttccaa ccggcatagt cgtacaatgc caaaatgaca gaagtcagca caaaaacaaa
    11821 gccaccgctt ttaaaatgct aaaatctcgc ctttatgaac ttgaactcat gaaacaacaa
    11881 gatagtgcta atactggaga aaaaagcgag ataggttggg ggcatcaaat ccgttcttat
    11941 gtgcttttcc cttatcagca agtcaaagac aatcgcagcg gagaagcttt ttctcaagtg
    12001 gataatatcc ttgatgggga tatcaaaaaa atgatagaag gcgttttaat tgccttaaaa
    12061 gcggagtaac aggcttaaaa ataagtaatt tctgcaaaat gtcggtataa aaaattagaa
    12121 agatagcggg attttcccgc ttgttttatt atcttgcata aaacctaaga gtatcattca
    12181 cagaacaata aactcttttc ttaaaatctt tatcgcaata aacactcaca actttatagt
    12241 ctttttatcg tttggattta ataagaaaac atagtttgag tatggagttt tatctatttc
    12301 taaatcacgc ttcatttctt taattttgcc ttctggattg ttaatatcac taattgttct
    12361 gactgaagta taatcataaa gtttataatt tggatatttt ttcataatct cttgattacc
    12421 taaatcaaac atagcttgat cgttgccatt gtttttttac tcgactaaat cgccatcgcc
    12481 acaacctata atcaaagtca tagctcctaa agccaaagca cttgttaaaa tctttttcat
    12541 tatttttgct cctagtttta aaattaaatt aatataacta tacctaaatt taaaatttaa
    12601 atatcatttt tgcaataaat tctaaagtaa aaatcacgta aaaatttaac tcataattat
    12661 ttcactcaaa caaattttta tgcaaaattt cttctaaaac cacagtagca taagagcctt
    12721 tttgcaagaa aaactctata caaaaatgag ctttttcttc atcataacgc cattttaact
    12781 cttctaaata tccccacata aagcgtcttg aaccttgcat tttagcctta aactccaaag
    12841 tatctttaaa aatttcattt tctaaattta aggccaaacc ttctcctgtt tcataagcct
    12901 tagcaccgat taaaagcccc atggcgctta tatctcttgc cttaaaacgc ccaagctcag
    12961 cacttaaatc ctcgcataaa aaacactttc caaaaggata atgccctaaa acctcacctt
    13021 ttaaaagctt aaaaaattgt tcttgttttt taagttcctt agcttcttct ttagaaattt
    13081 tataaatttg gatcaattct ttttcgctaa aatcatttgc aaaatgtgat aactccactc
    13141 ttttactcaa atatcgatta aaaagctcac tttgaaaagc tgaaattaaa aactctttca
    13201 tttttacatt tttcattttt ttgccacgca aaatttcaag cccttcttta taattatccc
    13261 caaattttcc aaaacgctga taaccaaaat aattcgtaaa accttgctta tccaaattca
    13321 tcaaagcttg ttctagtttt aaagcatcgc ttggtaaaac tttttttaag cgtatgaaaa
    13381 aagtatttcc ttttaaatgc cctattctta gcttgttttc atggataaaa gtttctaaaa
    13441 ttttaagttt aggatgagaa aaatttgaca aaaaactctc aaatttttta ggcatagaaa
    13501 ggtattgaaa ggttgatcct tgcttatctt taagccctgc ataaccaaaa tctcttattt
    13561 taaccccgct tgtttcgctt aaaattttta aagcttcatt tgtggttaaa tcttttttat
    13621 tgatatgcaa aataagatgt tcacccttac cgctaaattc atacaaaggc ctttcacgca
    13681 ctacaaaatc atcgctattt ttactaaaat acgcattaat aggactgtgt tttaaactat
    13741 acaaaggctt aaaaatggtg ttctcttcct ctaaattcat attttccttt cactgctttt
    13801 ccaaagatat ttaatttcac gccgtgtttt ttggctattg tttttatatt ttgacgctct
    13861 ttttcatcaa aagcaaacaa aatttcatat tcttctccgc tataaagcgt ataatcatca
    13921 agttttttaa accaagaaat accgcattta tttaaggcta aaagtcttga taaatccttg
    13981 cttaaaccat ctgaaatatc catagcacaa gaaattaaag gtgcgatttc ataaaaaaaa
    14041 ctagctctta attttggctt tataaataca tggtttggtt ttaaagtgcc cccattttgt
    14101 aaaatttcaa gtccttttaa acttcgtcct aattttcccg tataagcaag taaatgcccc
    14161 ttttttaaac cttttctaaa aacagcttta tcgttaatct ttgaaatgat agtaagacta
    14221 atgtctattt tatcattgct tatagtatca ccgcctatga tttttatatt aaatttccta
    14281 gctgttttta aaaaaccttt ttgcaaggct ttgatctcat tttcgcttaa attttttggt
    14341 aaagcaagtc ctaaaagtgc gtattttggt acagcattca ttgaaatagc atctgagata
    14401 ttaacaagca ttgcttttgt agcaatttgc tctaagctaa accattctct tttaaaatgc
    14461 acattttcaa aaaacaaatc cttactaaaa caccaatcat caataatagc tccatcatcg
    14521 ccattttttt catttaaaaa agctttgata ataaaatctt ctttgttcat aatgcgtgat
    14581 tttataaaat ttccttttaa attctagtga attttagaat aattttatat aatataaaaa
    14641 tatttaagga aaaaccatga aaaaattaga attaagaatt tttagatttg ataaaaccaa
    14701 ggattatgag gcttattata aaccttatat ttatgataat tatgaaaatt ttgcaagttt
    14761 ttatgatctg cttttgcaag ttcaagatga tgatatttat tttgattttg ataaagatga
    14821 agatacttac atagttgtaa ataagcaaat cataccactt tttacacctt tagaaaaaat
    14881 agcaaaagaa tttgatttta gtctttgtat cgagccttta agcacaaaaa gagccattaa
    14941 agatcttatc atcgataaaa atgatttttt agacaaatac aaatatcttg aaaaatttgg
    15001 tgatgaagag gataaaaaac tttatgcaaa atatgattat ttatattatg caagtgaaat
    15061 tttagactat cttcctgaat atatgggcga tggagtgttt tatttggctt caaaaatgat
    15121 agaaaaatat cctgaaaaaa agatagaaat tttaaaaact ctagcagata aagaaaaggg
    15181 tattttttat catcttgaaa acaaaaatga aattttagaa acaacgatca aaaacctaca
    15241 aaatgaaatt ttaaatttag ggctttttga taaaaatatt ttacactttg atttacctaa
    15301 aaccaatgct tttgataatg agatcaaaga acttaaagaa attaaacata attttaaaga
    15361 tttcaatata gctttttatg gttttaatgc ttgcgatacc ttaaaatcca aacttaaggc
    15421 taaatttatt tcctatgaaa acagtataaa aaataatggc tttagcttgc ttaatctaaa
    15481 tcctacgcta agctataaaa tagccgcaga tattgttttg gacgcttatg atagcggggc
    15541 tgattttatg gtagtaaaag aagaaaaaga tttttatctt tttgatactt gtgctaaaaa
    15601 acttatgcaa acaagtggaa gggaatttga agacttttat attttgagcc gttttgagtt
    15661 tttagccctt atcgaaggca tacaagctcc atcattaaaa aatcacactt taaaggttag
    15721 tttgatatga aaatctcttt agaatgcaaa gatctcatca tagaaaaaac tttagaactt
    15781 tttttaaaag atcatttggt aatgaaaaaa aattgtgatt tcatcattag cgatgaaaaa
    15841 atttataccg caaaaccctt atttatcatc tctaaaaact ctccattttt aagcatacca
    15901 tttagcaaag aagccttgtt tgagtcttta aatgaatttg ataatgcctt aaaagcagca
    15961 gctttgcaac ttgcacttga acaaaaaaga ctgcttgaag aaaaaattga cgctattgct
    16021 ttggaattta aaaaagatta tgaaaataaa atcgatcttg ccataaaaga tcttaaaaac
    16081 aaactcgtaa aagcacttaa tgatgaatga tgaatttata agcgttaaag acttttttaa
    16141 tcacaatgaa aaaagaaaaa aatttcttca aaaacaagaa attaaacctc ctaaagaaaa
    16201 aacaaaaaaa actaaagaaa caaagcttta tacaaatata gaaagtggta aatacaaagg
    16261 gaaaaaacta cttttaccta gtcttacaac aacaagaagt actaaaagca tagtcaaaag
    16321 ttgtgttttt aatgtaataa gagaagattt aagaagtaaa attttcattg aagcctttgg
    16381 aggaagtgct ttaatggcgg ctgaagcact aagtaatcat gctttaaaag cttatgctat
    16441 agaacttgat gcaaaagctt ataaaattgc tttagaaaat gctaaaaata tagatccaaa
    16501 tttagaagtg atccatgcaa atacttttga aattttacct aaactcatag aaaattcaaa
    16561 aaatgaaatc atcttatatc ttgacccacc ttttgatacc agagaaggtt ttagcgatat
    16621 ttatgaaaaa atttatcatt ttttagaaaa tttagattta aagactttaa atttaatcat
    16681 ttttgaacac cactcaacca taaaaactcc cgaaaaaatc caaaattttc aaaaagtcaa
    16741 agaaaagaaa tttggatcaa ctagcttaag cttttacgct tcttaactta cttggaacac
    16801 ttcttgcttg atctatcatc aacaatagat taaaggaaga atccatgaga gttttaacga
    16861 tatttttact ctttatgaca agcatttttg cagtgcaaat caaggatgta gcaaacactg
    16921 taggtgtaag agataaccaa cttataggtt atggacttgt tgtagggctt aatggaagcg
    16981 gcgatggaac aagctctaaa tttacactac aatccatctc aaaccttttg caaggtatga
    17041 atatcaaagt agatcctaac gatatcaaat caaaaaatac cgcagctgtt atggttacag
    17101 ccaaacttcc agcctttgca aaaagcggag ataaacttga tattaccgtt tcatctatgg
    17161 gtgatgcaaa atctttacaa ggcggaacac ttttactgac tgcacttcgt gggattgatg
    17221 gtgaaattta tgccatagca caaggctcta tctcaacagg aggtttaaca cctagaccag
    17281 gaggagcagg ttctcactca actgctgcaa ctgtaatggg cggagctaat gtagaaagag
    17341 aaattccaca aaattttagc caaaacaatg atctaacctt aagtttaaaa gtagcggatt
    17401 ttaaaaccgc aaacgatata gaaagagttt taaatactgt ctttggcgaa gaagtagcta
    17461 aagccatcga ctctcgcaca gtaaaactca aaaaacctga agatctttca aatgttgatt
    17521 ttatggcaag agttttagaa caagatatag cttataaacc acaaagcaaa gttatcatcg
    17581 atgaaagaac aggaacagtg attgctggag ttgatgtaga ggtagaacct gttttaatca
    17641 ctcataaaga tatcactata aaaatagatc caaacaataa cgcagtagct aatcaaaatg
    17701 aaatcgatat gaaagatggt ggttttgtag atccaagttc aaatacctta agaatcaaca
    17761 atgccaaaag cacagttgca aatatagcta gaatgcttaa caaacttgga gcaaccccaa
    17821 atgacattat cgctattatg gaaaatttaa agcgcgcagg tgcaattaac gcggatttgg
    17881 agatcatcta atgaaagtgg ataatttttt aaatacttat agtatgaata gcgctttact
    17941 tgatcgtgca gccaaagcaa gaagtttaga atcaagcatc aaaataaatg acaatgatat
    18001 agttacaaag agcaaagaag atgaagcctt aaaagaacaa acggatgctt ttgaggcatt
    18061 ttttttaaag caagttttag atgtatcttt aaaaagtcaa aattcactct ttggaaaaga
    18121 tgccagcgat gaaatatact cttccatgta taatgatacc atgagtaaag ctttaagtgg
    18181 aggtatgggt ttttcaaaat tattatacga ttttttaaaa gaaaggggtt aagtttttta
    18241 aatttaggtc gatatggttt gtagaggatt ataactaaga tcaaggaggc agaaatgatc
    18301 aatcctatac aacaaagtta tgtggcaaat accgcattaa atacaaatag aatagataaa
    18361 gaaactaaaa caaacgatac tcaaaaaacg gaaaatgata aagcgagtaa aatcgcagag
    18421 cagattaaaa atggtactta taaaatcgat acaaaagcta cggctgctgc gattgctgac
    18481 tctttaatct aaaaactttc attctccttt ttttgagaga gaaaaggaga aaatatgctt
    18541 aaacaaagac ttgatgaagt aaatgctatc ttagcaaaac ttattgcttt aaccgaagaa
    18601 gatatagaaa atatcaaagt ggctaaacat gagagtgtaa cgccaagtgt agaagaaaaa
    18661 aacaaactta tcgcggaatt tattacagct aaaaaacaac ttgatgttgc cttggttgag
    18721 ctaaataata gctctacaaa agggcttagt gaactcttag atgatgaaga taaacaaaaa
    18781 ctagatctac ttaaaaaaaa tcttcaaaac cttcatagta aaaacaaaga gtatgctaaa
    18841 tttgttctta ttgtcaaaga ttttcttgat ggcttagtaa ataaaatgtt tgatatcaat
    18901 gatggaacaa ataatgctta tggagataaa aagacaaatc cagagtcaat tttcaagatc
    18961 aatgtataag gatttataat gggtattttt ggaacattat acacaggtgt tacaggctta
    19021 aaggcaagcg aagttcaaat cgcaacaact ggaaataata tctcaaatgc taatgcaact
    19081 ttttatacac gccaaagagt ggtgcaaact acaaatggat atattacaac aggtggagtt
    19141 caagtaggca caggaactgc tgtagaaagt atagtgcgtt tgcatgatga gtattcttac
    19201 tataaattaa aaggtgcatc tactcaacta gaatatacta aatatatggc ttccacttta
    19261 caagaaattg cgcagcgttt tcccgactta caaaatactg gaattttgca agatttagaa
    19321 aattataaca aagcttggaa tgattttgca tctaacccca acgaaaatgc cacaaaaata
    19381 gcccttgtaa aagcttctca gaccttaaca gaaagcgtta ataacacttt tgcaacctta
    19441 gataaaatcc aaaaaaaagt aaatgatgat attaaaaata cagttgatga gattaataga
    19501 attggcgaag aaattgctac tataaataaa caaatttatg gacaagaagc cttaccaaca
    19561 gaacacgcaa atgaacttag ggatagaaga gatgaacttg agcttactct ttcaaagcta
    19621 gttagtgcag ttgcaagcaa aaatgaaatc aatcaagaca atcgccttga tacaaccatc
    19681 actgatccag gacatcaata caatctaagt atagaaggtt ttagtatagt agatggaata
    19741 aattttcatc ctttaaagct tgattatgat gataaaaata aatcttatag catttattat
    19801 gaaactcctg atgaaaaagt tcgcgatctt actgcaaaaa ttagcggtgg acagcttggt
    19861 gctcaacttg acttacgcgg tagaaactat agcaaaagcg aaggaaaata taaagatgga
    19921 attatccaag gttatatgga ttctttagat acttttgcta agaccatgat caatgaaact
    19981 aacaatcttt atgcaagttc tgcgaaaagt tctgttactt ctgattatct atctgggctt
    20041 aagggagata ttcctttagt taattacgac agaaccatac aaccaggaag ttttgatata
    20101 gtcatttatg atgataaagg cgataaaaaa ctcaccaaaa ccatcaccat agatgtaaat
    20161 acaaccatga atgatatcat gcgtcaaatc aatgctaata cagatgataa tgacaataaa
    20221 aattcaaacg atgatgttga tgatcatatc aatgcaagtt ttagctacga tgcaaaaact
    20281 ggagatggtt tatttcaaat caatgcaaaa tcaggtttta aggtagccat tgaagataag
    20341 ggcacaaatt tcgcaggtgc gtttagtata ggtggttttt tcagcggaac tgatgcaagt
    20401 aatatgaaag taaaagattc catcttaaat gatccaagca cagtaagagc aagtttaagt
    20461 ggggttgata gtggcaatga catggcaaat aaaatcatcc aacttcaata tgaaaaagtt
    20521 aatttttata atgaagatgg cactatcgat aatcttacca tggaagaata ttaccgcaaa
    20581 cttacaggta aaatagcctc agatggtgaa aataacaatg tcgtcaattc aagcaatgaa
    20641 actctttata attctgttta tagcgagtac caatctaaaa gtggcgtaaa tacaaatgaa
    20701 gaattagccg cccttataca atatcaatca agttacggtg cagcagcaaa aatcgtctca
    20761 accgtagatc aaatgcttga taccttacta gggcttaaat cttaagctct agtaatatca
    20821 aatgaaaaat tttatccatc ttaaagctaa gctcgatttt ttagccaatc aaaaaaatac
    20881 caatcattcc ctttttgaaa ctccagatcc tttgcaaatt gctaaaattc acaatgatga
    20941 atttattgcc ttaatttgtg ctttatttgc ctatggaaat gctaaaaata tagtaaattt
    21001 tctaaagaaa cttgattttt ctttattaaa ccttcaagaa aaacaaataa aaaaagaact
    21061 taaaaattta aaataccgct tccaaaatga aaaagatata caagaaattt ttatcactct
    21121 ttcaaggctg aaaaatgaaa tttcactcta cgaacttttt tatcaagcct atcaagaaag
    21181 agaaaatacc acagatgcca tcttagcttt tatgcaaaaa atcaaaacct taaattcata
    21241 ttcaagttat ggatatgatt ttttctttgg aaaaatttgg caaaacaccc ctacttcacc
    21301 tcttaaacgc tataatatgt atctaagatg gatggttaga aaagatgaac ttgatcttgg
    21361 actttttacc aaaattcaca ccaaagatct tttaattcca cttgatacac atgcacataa
    21421 aatttccttg actttaggac ttctaaagcg taaaatatat gattataaaa gtgttttaga
    21481 actcacacaa aatttaaaaa aattagatgc aaatgatccc ataaaatatg actttgcact
    21541 ctatcgttta gggcaaagta aggaaattga caaatttaag gagtgaagaa tgggttttga
    21601 gcacttaaat acgatttatt atttcatact tttttttgta gctctttttg ctggttttat
    21661 agattctatt gtaggtggag gagggcttat tactctacca gcactcatag cctgtggaat
    21721 tcctgcgcat ttatccttag caacaaacaa actccaaagc gtctttggtt cttttacggc
    21781 tactttaact tattttaaat ccaccactct acctcatctt gcttggggtg tttttttcac
    21841 agccttagga gcagctatag gaagttatag tgttcttttt gtaaaagatg agcaattaaa
    21901 gcttattatc ttaatctttt taactcttac cttcttatat acagccttac gtcccaactt
    21961 aggcaaacac gaaagcgaac ctaaaataaa aaatatcaaa atttttcatt taatttgtgg
    22021 cttaacttta ggattttatg atggattttt agggcctgga acgggttcat tttggatttt
    22081 tgcttgtgtg atgctactag gttttaatat gagaaaagcg agcattaata ctaaaatttt
    22141 aaatttcaca agcaacatca ttgctcttgc tatattttta tggcaatatg aacttttatg
    22201 ggctgtaggt ttgcttatgg gtgtaggaca agttttagga gcttatttgg gttcaaaact
    22261 tgtgttaaaa actaatggaa agtttataaa aactttattt ttaatcattg taggagctac
    22321 tattattaaa gtagcttggg attattttag ttaaaattga cccctgagct aagctcccac
    22381 ataggtaaaa atatacctaa agccaaaaac aaaactaaaa gcgctacaaa taaagtcatc
    22441 ataggctcta aaaaaatcaa aaatctatcc atcaaatttt cgcttttttg ttgataatat
    22501 ttggcaattt cttcacttaa tacttcaagt cttccacttt tcatcgcaac actaagcata
    22561 gaaaacacca aagaatcaaa aatatcaatc tttttaaaag cctgacttaa ctcaagacca
    22621 gaatctataa aactaaaaag ttttttatac tgaaaaatta aaaatttatt ttcaagccct
    22681 ataatagcta aatcaaaagc tttagatatt gaaattccat tttttaaaag caaagaaaaa
    22741 accataaaaa aataataatt ttgattataa ataatcaaac gagaaatcaa aggtactttt
    22801 aaaaataaaa aatcgcaaga aaaagcaaaa gaatgaaaat ttttataagc taaaataagc
    22861 ataacaataa aaataacaaa caaaaatatg caaaaaattc catagtcatc taaaaaatta
    22921 taaatttcta acattacatg cgtgataaaa ggcaaactcg cgcctaaatt ttcaaataaa
    22981 tctttaaaat taggcactac aaaaagcatt aaaaacaaaa atgctccgat aatacttaaa
    23041 aaaaccaaag taggatatct aaaagccttt tttaattgtt tttgactctc taaacttttt
    23101 tctcgaagtt tagaaatttg actaaacact tcactgattt ttcctgtctt ttcagccgtt
    23161 ttaatcaaag ctaactccgc acgatttaat ccaaaattag cattttcaaa agcttgattt
    23221 agattttggg ctaaaattaa attgtctaat atctttttca taatcttgca agagtgcata
    23281 agatataatt ctctaatcgc ttcttgaaca cttaatccaa cttcacacaa caaagctagc
    23341 tctttaaaaa agagtataaa attttcatcc tttaatctct gaaaattaga tttttgaatt
    23401 tcttttatat caatgatttt ccaattcttt gacaaggctt ttgcttgtgc tgtatttaaa
    23461 ttttcagctt ttatagtttt tgtataattt tgattgtttt taagaaattc tacttcataa
    23521 aatttcatct tacaaccctt aaaagctcat ctatacttgt aagaccttct ttggcttttt
    23581 ttaaaccttg ttcaaacata gtttgaaagc catatttttt tgcaagctcc attaaaatcg
    23641 ttttatcttg attttcccta attgcacaag ctaaatcttc attgatctct aagcactcag
    23701 cgattaattc tctgccaaaa aatccactat gatgacaacg ctcacatcct tttggttcaa
    23761 aaaattcacc ttcaaattca atataatgtt ttttgctttt ttgcttacac caaggacaaa
    23821 gttttctaac caaacgctgt gctataacaa gactcaaagc cgatgctatc aagtaacttt
    23881 ttgcttgcat atccaaaagc ctatcaatgg tactaagagc atcattagta tgcaaggtgc
    23941 ttaaaagcaa atgacctgtt aaagaagctt taagtgcaat atctaaactt tcttcatcgc
    24001 gaatttctcc tatcatgata atatcaggat cttgccttaa aattgctctt aaaacactat
    24061 taaactcgac tccaactttt gaattgagca aaatttgctg cactaaagga attttatatt
    24121 ctataggatc ttctgcggaa ataatctttt tttcaatact tttcaactca tttaaacacg
    24181 cgtataaagt tgtgctttta ccactacctg taggaccggt taataaaatc attccattgg
    24241 gacgatgtaa aatctttttt aaaatttcta aatttttatt tccaagattt agtttataca
    24301 aatccaaaat ttctttatca tgttttaaaa ttcttataac aacactttcg ccataaatca
    24361 aaggcaaaca tgaaacacga aaatcatatc tttcattttc aaaatctaat tcaaaacttc
    24421 catcttgtgt ttttcttgat tcagctaaat tcaaacaagc taaaaatttg acatgaaaaa
    24481 ccaaagcttc ataaatatcc ttctcaaaaa tagcaaattc acgcaaaatt ccatcaaccc
    24541 taaacctaat caaagcatca tcatttcttg cctctatatg aatatcactc gcatgaaaag
    24601 ataaaatttc atgtaataaa aaatcaaaaa tttgactgat gcaactttga tcatctcttt
    24661 tgtgattttc ttgccattca agtctaagct taatgcttaa tcttttaatc tcctcttgaa
    24721 tgcgaatttg atttaaaatt ttagctatct ttaattcatc ggcaattgca gtgtcgattt
    24781 tttcacaaat cataaaagtc ttaacttgct ctaaaagctc taaagaacaa ggtttggatc
    24841 taataatcat aaagccgtca ttgtttttaa taagcagaaa tttaaatttt aaaagtaaag
    24901 aaaaaggtat accttcataa ataaaatcat tatcttcatc taaatcaaca aaatgcaaat
    24961 tacaaaaatt tgctaatttt ttaaaaaaat cccaagaagt gatattaaat ttagtgcaaa
    25021 tttcatcaag acttatttca ttatcaatat aagcttgaaa aattttatcc attctacttt
    25081 ccatctaatt ccattaaacc ataataattt atataagcat ctaaagcact ttgagcttct
    25141 ttttcttcgc ctaaagctct tttagcctga gcaaaaatca gccaagaatc ttgtttttgc
    25201 ttgtcaagtt cattggcttt taaagcccaa aatattgtct tttgataagc tttaatatca
    25261 aaatacttct tagctaaatt taatgccttt tcatagcttg gattttgata aaaagatttt
    25321 tttaaatcag aaatatttaa aattttagaa tcaatttcta tcttgctaat atgtgtattt
    25381 tcctgcaccg ctttaacttc ttctagttct ttatataact tttccctaga aatcttattt
    25441 ttttcttgta aaatttgcgc ttgaagaatc ttttgctcca aatgcttttt atgttcaata
    25501 gcttgcaaat aaatattttt ttgcttatta tatttttgca ttagcacaaa aaaacaaaat
    25561 gctattactg atattagaat aattaataat aaatatttta aatatttttt aagtaaaaag
    25621 tatttatacc taagctcaag ctctttaatt ctttcttgca tatcttacct taataagcca
    25681 ttctctaaag cactaagctt taaaatatac tcttgacttt tgtttttatc aaaaaaacta
    25741 tttatctcat aaaaactttt taaagtttta tcaatatatc ttaaatttcc ttgagaaatt
    25801 ttttgtaaaa acttaagaca tttatt
//
LOCUS       DARBBO010000013        25194 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.013, whole genome shotgun sequence.
ACCESSION   DARBBO010000013 DARBBO010000000
VERSION     DARBBO010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25194)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25194)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25194
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.013"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(85..1122)
                     /locus_tag="SB854_000406"
     CDS             complement(85..1122)
                     /locus_tag="SB854_000406"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HEG0956447.1"
                     /translation="MKKLFICCLFIGVCMKKAKSRIAILGTGGTIAGFIDSTIATTGY
                     TAGAIDIDVLIKAVPQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDG
                     VVITHGTDTMEETAYFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKE
                     AKNKGVMVAINDKILSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHT
                     KNVPFDVSKLTSLPKVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKD
                     VLKELLKKGLKVVVSSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLMLALTKTSD
                     PKKIQEYFLKY"
     gene            complement(1176..2747)
                     /gene="recJ"
                     /locus_tag="SB854_000407"
     CDS             complement(1176..2747)
                     /gene="recJ"
                     /locus_tag="SB854_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEG0956448.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDVLPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            complement(2734..4365)
                     /locus_tag="SB854_000408"
     CDS             complement(2734..4365)
                     /locus_tag="SB854_000408"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEG0956449.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDANSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKHGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            4485..5108
                     /locus_tag="SB854_000409"
     CDS             4485..5108
                     /locus_tag="SB854_000409"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEG0956450.1"
                     /translation="MQITLLFHIPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            5228..6613
                     /locus_tag="SB854_000410"
     CDS             5228..6613
                     /locus_tag="SB854_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEG0956451.1"
                     /translation="MDKQFFQDFLMLSQAHTITTLAMLCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAKEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIYEG
                     NKQIREIQTFSNIILGLIPSNIIAAINKENIIAIVIFSFFIGISAKKISKKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(6652..9021)
                     /locus_tag="SB854_000411"
     CDS             complement(6652..9021)
                     /locus_tag="SB854_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEG0956452.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLCEYF
                     EKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVVIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(9037..10365)
                     /locus_tag="SB854_000412"
     CDS             complement(9037..10365)
                     /locus_tag="SB854_000412"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEG0956453.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLINDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEVIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ILHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDAIFKRTFK"
     gene            10443..11345
                     /locus_tag="SB854_000413"
     CDS             10443..11345
                     /locus_tag="SB854_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG0956454.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNEILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILVAKNKKAQIDLKALFEKKLVQKEYLALANGKIE
                     ENFIIDKAINLAKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKEQIESILDEKLTPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFNINSKINIKEIFNNSIK"
     gene            11458..12336
                     /locus_tag="SB854_000414"
     CDS             11458..12336
                     /locus_tag="SB854_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEG0956455.1"
                     /translation="MKFVNFIQGQKPNLGVLNSSGKIVSFDDLGIEANDMNEFIIHFD
                     KFKHKLTDLDSKIAYEIPQENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATPPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYQAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            12400..13314
                     /locus_tag="SB854_000415"
     CDS             12400..13314
                     /locus_tag="SB854_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG0956456.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAELGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLTEQAMGPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAVAE
                     FEKTLITPNSPFDRYLSGDQNAISTQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            13304..15082
                     /locus_tag="SB854_000416"
     CDS             13304..15082
                     /locus_tag="SB854_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG0956457.1"
                     /translation="MTNKKSSFLIKFIILSILVLTFILVLLAIIFNNYSSSKNNKDLI
                     NIVQQLEISDEKINSIFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLSTE
                     NILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYKMIVKQISIMQDNSSIYENNSLMK
                     ELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKKVIMPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            15188..15355
                     /gene="dba"
                     /locus_tag="SB854_000417"
     CDS             15188..15355
                     /gene="dba"
                     /locus_tag="SB854_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HEG0956458.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            15367..16893
                     /gene="dsbI"
                     /locus_tag="SB854_000418"
     CDS             15367..16893
                     /gene="dsbI"
                     /locus_tag="SB854_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HEG0956459.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(16914..17588)
                     /gene="queC"
                     /locus_tag="SB854_000419"
     CDS             complement(16914..17588)
                     /gene="queC"
                     /locus_tag="SB854_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HEG0956460.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCTSDTPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            17665..18891
                     /locus_tag="SB854_000420"
     CDS             17665..18891
                     /locus_tag="SB854_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD family hydrolase"
                     /protein_id="HEG0956461.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            18983..19507
                     /locus_tag="SB854_000421"
     CDS             18983..19507
                     /locus_tag="SB854_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YagU family protein"
                     /protein_id="HEG0956462.1"
                     /translation="MKKYFQKRYTLAFFIGILAGIFGAIVKWGWEVPFPPRNPNVFWP
                     ADALERVTPPKIFLEQLGLPTDWTYMFSGMQMPLSIFIVHVGFSIIFGVAYCMIAEKW
                     HRITMWQGAVFGFFVYLFAHVIIMPLIAEVPPLSEIPFDEHLSEIFGHIVWLWGMEIV
                     RRDIRNRITKEIEE"
     gene            complement(19519..21195)
                     /gene="ilvD"
                     /locus_tag="SB854_000422"
     CDS             complement(19519..21195)
                     /gene="ilvD"
                     /locus_tag="SB854_000422"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEG0956463.1"
                     /translation="MRSDAIKKGHLRAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSRELIANSIE
                     TVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYESKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLKERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAKQGCVI
                     KTAGIIGERKFKGKAVCFNSQDEAIKGIIKGKVQKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANVSEEEIAKRKKEFALPQKEVSSRWLRMYQKLVSNASKGAVLDME"
     gene            21355..22002
                     /locus_tag="SB854_000423"
     CDS             21355..22002
                     /locus_tag="SB854_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="desulfoferrodoxin FeS4 iron-binding
                     domain-containing protein"
                     /protein_id="HEG0956464.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTVVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVTAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            22067..22306
                     /locus_tag="SB854_000424"
     CDS             22067..22306
                     /locus_tag="SB854_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HEG0956465.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITIE"
     gene            22339..22914
                     /locus_tag="SB854_000425"
     CDS             22339..22914
                     /locus_tag="SB854_000425"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEG0956466.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(22915..24360)
                     /locus_tag="SB854_000426"
     CDS             complement(22915..24360)
                     /locus_tag="SB854_000426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEG0956467.1"
                     /translation="MGNARGFLDFKRMDFKKIAPKERVLNFKEFTIPLDKKEQEVQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWNDLVYRSLWKEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGVSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAVIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDSKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADMAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKRPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTHVEGVEANDLKREFKEGKA
                     INVEISNSKKTYKADLVLLAMGFSGCEEAISKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
     gene            complement(24363..>25194)
                     /locus_tag="SB854_000427"
     CDS             complement(24363..>25194)
                     /locus_tag="SB854_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HEG0956468.1"
                     /translation="SFDKNFIESIEAKWEGIKNAFIETFRLLRSFGFEAKTLSSNNAI
                     LPILYFIYHKNLTNNIVDSVKCNENRAIIKKWLLRAIILKPFGGSSDTVLSNMRKAFI
                     KDFKQNSGFFDREIELFPLEEIEKEAKYIQTIDEEYLENNVIECRKNSPEAFAVLSLL
                     YPNLDYKNNNFHKDHLHPESAYKEYEKLYKATDNCISFNIYDSLPNLQMLDANENESK
                     NNKPLKQWVNEKCNGNRKEFLGKHLIPDVDLSLENFNNFIEERKKIIIDKLKSILNKE
                     "
BASE COUNT         8564 a         4437 c         3602 g         8591 t
ORIGIN      
        1 caagatataa tatactatta ataggattga aaggcttgac ttagggaaga taagttccct
       61 aagtttagaa atatttaaaa aattttaata ttttaaaaaa tactcttgaa tttttttagg
      121 atcacttgtt tttgtaagtg ctaacataag caaaactctt gctttttgag gatttaaatc
      181 ttcagcacta ataaaaccta atttttcatc tgaatcactc acagcaacac aacctgctac
      241 aacccttgaa cttacaacaa ccttaagccc tttttttaaa agctctttta aaacatcttt
      301 ttgatttttg tgtatacttc ctgctccact tcctgcaaca actatgccct tagttccatg
      361 ttcaaataaa gcttttgcag cgacaccact accatcattt gaatagctat aaagaatatc
      421 tacttttggc aaacttgtga gtttgcttac atcaaaagga acgttttttg tgtgagcttt
      481 agtaacatta ttatagaaaa agactttacc atctactata taacccaaat ccccaaaatc
      541 aggagaagag aaagcatcaa catttaaact atgagttttt actacgcctc tagcgcttaa
      601 aattttatca tttatagcta ccataacacc cttattctta gcttctttat tggcaactaa
      661 tgccactgca ttataaagat ttttcggacc atccgcactt atagcagttg atggacgcat
      721 agcgccaact agaactacgg gcttatcact tttaatggtt aaatttaaaa aataagcagt
      781 ttcttccata gtatcagtac catgagttat caccacaccg tctatcccct cagcaaaaag
      841 cttagcaatt tttttagcaa gccttaacca aatttcatca cacatatttg aactatcaat
      901 atttgctatt tgctcccaac taatatctgc taaatctcta atttgcggaa ctgctttaat
      961 taatacatct atatcaatgg ctccggccgt atatcctgtt gtagcaatag tgctatcaat
     1021 gaagcctgct atcgttccgc ctgttcctaa aatagcaatc cttgatttag cttttttcat
     1081 acatactcct ataaaaagac aacatataaa taatttttta atctcttgta tattaatttt
     1141 ttaatgttat taatgcaaat tataagtaaa aatttttata aaatctcttt aacaacaaac
     1201 tgtggagtta ccattcccct aaattcattc ttagaaatac ttccaagcaa agaaatattt
     1261 tgattcaatt ctggctcttt atcaaaatta aaaaataaag cttctatggt tttattttcc
     1321 ttagttaaaa caagctttaa gtgtttttca tctttaccta gaagtttttt attttttaca
     1381 caaagatttt ctaaaacaaa aaaaggtcgt ggatttttat gtccaaaagg ttcaaaagat
     1441 tctaaaattt caagcatttc aaaatcaatt tcgctaggtt ctaagattcc taaaatttca
     1501 tctgtatcca aaaattcact ttcagaaatt tgcgaacatt cttttttgat tttattttta
     1561 aattgttcaa aattttcaga gtttaaactg attccagcag cacctttatg accaccataa
     1621 ttgcttaata tagaatttgt cttagaaatt aaagctaaaa tatcaatctt gccaacactt
     1681 cttgcactgc cttttaagtg ttcttcattt tgagaaaata caaaagcagg tttattaaaa
     1741 tgtttagcta aacgacttgc cacaatccct aaaacacctt catgccaatt taaacccgat
     1801 accacaatac aagaatcgtt ttcatcgatt tgatttaaac tatcttcaaa aagctgtttt
     1861 tcttcatctt tacgactttc attaaaacta acaatttgct ctagatattc taaagcttta
     1921 ttaaaatctt tagtgtgtaa aaattcataa gaaatacttg catcatccat tcttccagca
     1981 ctatttataa gcggagcaat taaaaatcct atattatcaa gagcaaattt atccttttga
     2041 taataatgct taatagccct aaaagcagcc cttttagatt tgttaatatg atctatgcca
     2101 cgccttacta aagcacgatt taaatctcta agttccatca tatctgcaac aattgcaatc
     2161 gccaaaagtt ctaaaaattt acacatgtca tatttaagct tgcacacctc ttttaaagcc
     2221 gctatcaaat accatgcgac ttgagctcca caaatttcaa tttctggaaa atcacaatct
     2281 ttttgctttg gattgataat ggcaaaagca tcaggtaaaa catcttgagg catatgatga
     2341 tcagtgataa tcaaatctat atttttttct ttacagagtt tggctgcttc aagagcagct
     2401 attccattat ctactgttat tattaaattt acatcaagtt cgttgatgat ctcagcattt
     2461 aatccatatc catctttaaa acgatttgga attcttataa tataatcaaa acctatatca
     2521 tcgaaaaatt ctgccataat aacacaagaa atgattccat caacatcata atctcctact
     2581 atggcgactt tctcattttt ttctacagct tctttgatgc gattagctgc tttatatgca
     2641 tcctttaaac agcatggcaa aggcagatca caaagtttgg tatgcaaatc tttttcaaag
     2701 cgtgaagcca aaattttttt aatttcattt ttattaatta tcttcatagt ttatagctgc
     2761 cttgataaaa ctgcaaatca caggattaac atgctcaagt cttgatgtaa attctggatg
     2821 aaactgcaca gccaagaaaa aaggatgaca gttaagctca actgcttcaa tcaatccttt
     2881 gctttcacca cttacaatca aaccgtgttt ttcaaaatct gctctatatt ttggatttgc
     2941 ttcatagcga tgacgatggc gttcttttac actctttact tcattataaa ccttagccaa
     3001 aagggatttt tccttgatat cacatttata agcccctaaa cgcatagttc cacctaaagg
     3061 agtttttgca gtacgaattt gtttttctcc atttgtatcc ataaattcat caatcaaata
     3121 aaccacagga ttttggcatt tttcattaaa ttcacttgaa tttgcatctt taagttttaa
     3181 tacatttcta gcaaattcca ctaaagcaag ctgcatacct aaacaaattc ctaaaaaagg
     3241 aattttattt tctcttgcgt attgaatggc ttttatctta ccttctacac cacgatatcc
     3301 aaatccccca gcaaccaaaa ttccactcac atctttaaat acttcagaac tttccatatt
     3361 ttcaagtttt tcactatcta cccattttaa ctccacttta gtatctaggg ctgcacctgc
     3421 gtgtataata gcttcagtaa ggcttttata actttctttt aaatccacat atttgcctac
     3481 aaaagcgatt ttaacttcat tgcttggagc tataactctt tttaccaaag agtcccaatt
     3541 ttccatatta ggttttaaat ttttcaaatc caaaatttca gcaatagggc ttaaaatatc
     3601 ttgctttaaa aaattaagtg gaatttgata aatactagcc gcatcaacac tttctatcac
     3661 gcaatttttt tccaccccgc aagaaatagc aattttatct tttaaatctc tatcaagagc
     3721 tttttcacta cgacaaataa tcatatcagg actaatgcct atgcgcctta actcgcctac
     3781 actatgttga gttggctttg tttttaattc ccctgcagcc ttaataaaag gtactagagt
     3841 aagatgaata ttcatagcat tatttttacc cacttccaaa cgcaaagcac gaatagcttc
     3901 taaaaaaggc aagccttcta tatccccaac agttccgcct atttcaacga taagtatatc
     3961 tttgccttct cctgcttttt taatgcgatc tttgatttct cctactatat gagggataac
     4021 ttgaatggtt ttgccaagat attctccacg cctttctttt tcaatcacac tttgataaac
     4081 ccgtcctgta gtgaagttat tatcttgaga taaactctca tccaaaaaac gctcataatg
     4141 ccccaaatca agatccgttt ctgctccatc atcagttaca aaaacctctc catgctcaaa
     4201 aggactcata gtgcctggat caacattgat ataaggatca gcttttaaaa tactcacttt
     4261 aagccctgaa ttttttaaaa gtgttgcgat agaagcagcg gctatccctt tacccaaaga
     4321 acttaaaact ccacctgtta caaaaatata ttttgtttgt ttcattgata ataagcctta
     4381 tttttttatc taattatagc ttgataaaac tttttatttc attagaattt taagtaaaaa
     4441 atgcaagaat tacaaaaaat atttttatca aaaaaggaat aagcatgcaa atcactttac
     4501 tttttcacat tccattatct gtttgttctc atgcaacaag aacttgttgg caaagctttg
     4561 aaaaaggcga ttgcggtggc gaaaaagata aagaacttat cgatcgcgtg ggcaacaaat
     4621 tcaaacacgc ttcaacctta gaacatctaa actatacttt ttatatacaa ggaatttcaa
     4681 gagcttgctt acaagaagtt gcaagacatc gtcacactag tcctagtgta aaaagcacgc
     4741 gttatacctt aaaagaactt cgcaatgaag ctgaatttaa aataggagat tttgaaaatg
     4801 caagccgtta tcttgtgctt tgtggtaatg aagaggttga taacgcaagc attaaagcct
     4861 tagaaaattt acgcactatt ttacaaaaaa gcattagtct agatatagcc aaatactgct
     4921 taccagaaag ctataaaact gaacttacac taacgattaa tgcaagaagt ttgcagaatt
     4981 tcatttcttt gcgtagttca aaatcagctc tttgggagat tagaaattta gcaaatgctt
     5041 tatttgaagc cttgccacaa gaacacaaat ttatatttga acattgctta cataaagata
     5101 tagaataaat catactaatt ttatcttatt taaaatattg ttatgctacc atttataaaa
     5161 tcaagcttta cgcaagtata ttttcatata ccttgtgctt gattatagtt tcttataagg
     5221 actttttatg gataaacaat tttttcaaga ttttctaatg ctttcacaag ctcatactat
     5281 aactactctt gctatgcttt gtgttgtttt ttacgcatta aaaaaaatgc gggatataaa
     5341 aatcaatttt tctcttcgca tgctatttgc gcttttaatg ggtttggggt ttggttttgc
     5401 tttgcaatat ttggcaaatt ttccagatgc taaagaagca agtaatattc tttggtatag
     5461 cgaaacaaaa cattggtttg catttgtaag ttctgttttt gtagctttta taaaaatgct
     5521 ggttgttcct cttgtaagca tttgcattat aaaagtaatt atagaaattg ataaaaatat
     5581 caaaatatcc tccttgcttg gaataagtct tttttggata ctctttagca cagccatagc
     5641 tgcaaccttg ggtatatttt taggttatag ttttgattta ggaagtaatt ttgctatata
     5701 tgaaggaaat aaacaaattc gcgaaattca aactttttca aatattatac tagggctaat
     5761 acctagcaac atcattgcag ctattaataa agaaaatatt atagctattg tcattttttc
     5821 tttttttata ggaattagtg ctaaaaaaat ttctaaaaaa gaagagtatg aacaagcctt
     5881 taaaagtttt cataatttta tcctaacctt ttataatatt atgatgaaca tgactgctac
     5941 agttattaga tttatgcctt atgctgtagt ttgtatgatg gctaatgtgc ttttaagcaa
     6001 tggttttgaa gctatcaaaa cagctggact ttttataatg cttatttata tagctatgtt
     6061 aataatgttc ggggtgcatt ttttacttct tgcttcacaa gggctaaacc ctataaaata
     6121 tgcaaaaaaa gcatttcctg tatggttatt tgcatttagc tcaagatctt ctttgggcac
     6181 tttgcctatg actacttcaa ctttgcaaaa taaatttgga gttaattcag ctatagctaa
     6241 ttttgtagca tctataggta caacaacagg acttaatggt tgtgcgggat attttccagc
     6301 tttagcggca gtttttgtag cttttgctac acatacacat attgatttta catttgcttt
     6361 aatgatagtt ttggtagctg ttattggatc cttgggtata gctggagtac ctggaagtgc
     6421 aactatggca gcttctatta tgctagcagg gattggattt ggtaataatt ttgtcatgct
     6481 aagtttgatt ttagctatag atcctattat agatatggca agaacagcaa gtaatgtctc
     6541 aggagctatg acttcggcac tttgtactgc aaaaaatcta aaagccctag ataaagaaat
     6601 ttacaattct taatctctta aaacccaata tttttcattg ggttttagta tttattggca
     6661 accttcacat tctatgctac gatctgcaac attgactttt tcactatcag ggctttcgct
     6721 tcttagataa taagtagatt ttactccgag ctcccaagcg agttgataaa tttcatttaa
     6781 atatccccca cttgctttat caagcgataa aaagatattt aaactctgcc cttgatcgat
     6841 ccatttacca cgcacagcag cagcctttac aagaattttt tgatcaagtt cgtaggctgg
     6901 agtatagtat tgccaagtat caaggcttaa atttggcaca acaacaggta tcataccact
     6961 taaattttgt tcaaaccact ttcttttgta aacaggttct atagtctgcg tagtacccac
     7021 taaaatagaa atagaagaag taggtgcaat ggccatcaaa taaccatttc tcataccatc
     7081 ttttttaact ttttctctaa gtttaaccca gtcgcattca ctttgatcaa ataagccctc
     7141 tcttaaagtt aaagctttag ccttaggact tgctacatca ataggaaaaa tccccttgct
     7201 ccaatttgat ccttcaaaat cttcataaga acctttttca agagctaaat ttgaactcgc
     7261 attaatagcc tcaaagctaa tttgttccat aatctcatcg attttattta aatgctcatc
     7321 gcttccccaa taaatcttag cctcagcaag catttgtgcc tcacccatga ctccaagacc
     7381 tatggcgcga gattttaaat ttgtatcttt tacttttcta tgaggataaa aatttaaatc
     7441 tatcacatta tcaagcatac gaatagccgt tggcacaaca cgctctatat cttctttagt
     7501 atacactttg ctaagattta tacttgctaa attacaaacg gctgtttttc catcattttt
     7561 atatttttcc actatataaa ctttattacc atcaatacta tctaaagttg agattttttt
     7621 ggctggtttt tcatatcccc catcgatcac aactttttgt tcttcatcaa aatgaagctc
     7681 atctccattt tcaaaaacta ctttgatttg ataataattt ggctcggtat tttgaaaaat
     7741 ttcagtacat aaatttgaac ttctaataat tcctacatga gcatttggat ttgctctgtt
     7801 ggcactatct ttaaagcata aaaatggcaa gcctgtttca aaataattta gcaaaatttt
     7861 cttccaaagc tctttagctt ctacgatttc tttggtaatg ctttcatctt tttcatattc
     7921 ttcatagcgt ttttcaaaag cctcgccata taaatcacac aaatccgctg tatctgcagg
     7981 atcaaaaaga gtccatttat cattagctct tactcttttc ataaaaagat cattgatcca
     8041 taaagcaggg aaaagttcat gagcacggcg tctttcttcg cctgaatttt tacgcaaatc
     8101 gataaaatca cttatatcca tgtgccaagg ttctatataa acggctatag ccccttttct
     8161 ggttcctagt tgatctactg ccacggcaat atcattagta attttcaaga aaggtataat
     8221 ccctcctgcg gcatttttat gcccatctat gcttccaccc atagcacgca ctttagacca
     8281 atcccaacct ataccaccac caaatttaga aagtaaagcc atttcttgat aagaatcaaa
     8341 aataccttca atattatcag gggttgatcc tatataacaa gagctaagct gatggcgtgt
     8401 tgttcttgca ttagataaag tcggagttgc aagcatgagt tcaaatttag aaataagatc
     8461 gtaaaatttc ttcgcccatt cttgaggatt aaattcattc tgcgctaaaa acatcgcaat
     8521 ggccataaac atttgctgag gaagttctat aggcatacct ttactatctt taatcaagta
     8581 tctatcatat aaagttttaa taccaagata agtaaattgc atatcgcgtt caggtttaat
     8641 ataagcattt aaatcatcta aatcatattt ttctttaaga ccaagtaaaa ttcttccttc
     8701 tttttcacct ttttcaaaat actcacacaa atgattatag cgattcatac cattaacttt
     8761 tttatataaa tcaaataaaa aaagtctagc tgcaacaaag gtccaatttg gacaatcaat
     8821 atctatctta tctactgcag ttttaattaa agttttttga atttcttcag ttgaaattcc
     8881 atcgcgaaat tgaatctttg catcgagttc aagttcgctt aaattcacac cctctaaatc
     8941 ttttacagca tcagaggtgc attttttgat cttggaaaca tccaattctt ctgtacgacc
     9001 atttctttta ataactttca ttgccttcct tgctttttat ttaaatgttc ttttaaaaat
     9061 tgcatcaaca ttttttgtat agtagttata atcgaaacat tttcttacat cctcttcgct
     9121 caaacttttt cttaaatctt catcgcttaa aagcgctaac aaaaacaaac tttcattttt
     9181 ttcattgata gcagccttgc cattttgcaa atctgcccaa actttcatag cgtttctttg
     9241 aactatttta taagcttctt cacgactaat gcctttaaat ggaagctcta aaagcaccct
     9301 ccctgaaaat acaagcccgc ctgtaagatt taaatttttc atcatatttt caggataaac
     9361 taaaagctta tcaatcaaat ttgtaagacg cataagcata aaatcagccg tgataaaagc
     9421 atcaggcaaa ataaatcttt caacactaga atgagatata tctctttcat gccaaagtgc
     9481 aacattttct aaagctggag ttacaaaaga tctaagcaca cgacaaagcc ctgtgatatt
     9541 ttcacttaaa acaggatttc ttttatgtgg catagctgaa cttccttttt gtcctacact
     9601 aaaatactct tcagcctcat aaacttcagt tctttgaaaa tgtcttatcg ctacagcgat
     9661 ttgctcacaa cttgaagcta aaattgcaat agcagaaata acttgagcat aacgatctct
     9721 ttggatcact tgatttgaaa caggggcagc tttaagacct aaatttttac aaacttcttc
     9781 ttcaaattct aaaggagcat gagcaaaatt tcccattgca ccactgattt ttccatagct
     9841 tatcacttct tttgcatgtt ctaaaagctc ttttgcatgc aaaatttcat cataccaaat
     9901 agctaacact aaaccaaaag tgataggctc tccatgaatt ccatgacttc ttcctaccat
     9961 taaggtattt ttatgctcca aagcacgctt tttgatcact tctaaaagca aagaaacatc
    10021 ttctaaaata agctccaaac tctcttttat ctgtaaagca acagccgtat ctatacaatc
    10081 agaacttgtc attgcataat gcacaaaacg actctcttct cccaaacttt cacttacact
    10141 tgtaagaaaa gcgataacat cgtgttttgt ggttttttct atttcgtcta ttcttgcaat
    10201 atcaaatttt gcatttttaa gaattttttc gcagtctgtg tcattaatga gaccgagttt
    10261 attccaagct tttacagcgg ctaattctac ttttaaccac gcatcgtatt ttgcttgcat
    10321 gtcccatttt ttagccatga tttctctgct atatctttca accatctttg aaaccttttt
    10381 agctataatt ttatatttta aaaaacagaa attatatcaa attatcctaa gaaagttatt
    10441 aaatggctta cataaaaata aaactctcaa ataatggaaa aaaggcattt caagtcctta
    10501 tggaaaattt aaaaattagc ataaatgaag cacaaaaact catagacaaa aaaagacttt
    10561 tttgtgatgg aattttagta gaagaaaaga atgaaatttt aaatggttta gtagagctta
    10621 tagtctatga aaacaatccc aaaggagtag aaattgtctt tgaaaatgaa gactttgcca
    10681 tacttgaaaa agaaagtggg atcttaagtc atccaaatgg tagacattgt aaatacagtc
    10741 ttagtgatga aatttggcat ctttggggaa aagaagcttg cgtagcacac agacttgata
    10801 aagaaacgag cggacttata cttgtagcca aaaataaaaa agctcaaatt gatcttaaag
    10861 ctttgtttga aaaaaaactg gttcaaaaag aataccttgc tctagctaac ggaaaaatag
    10921 aagaaaattt tataattgat aaagccataa atttagccaa aaactacgat gatgtaaaaa
    10981 caaggatgca aatttgtaag gaaggaaaac aagctatcac tgagtttgaa attttagaat
    11041 actttcctaa aatcaacgct actcttttac tctgcaaacc cttaacaggc agacaacacc
    11101 aaataagagt gcatttacac tataaaaatc ataccatttt aggcgatcca ctttatgggc
    11161 ttagcaaaga acaaatcgaa agtattttag atgaaaaatt aacccccaaa gaacgcttaa
    11221 aacttacagg tgccttgcgt ttgtgtttgc attcttatcg tttgaaattt caatataaaa
    11281 atcaaaattt taatatcaac tcaaaaataa acataaaaga aattttcaac aattctataa
    11341 aataaaatga tgtttcacta cgctacaatc aatcactttt ttaccaaatt ttaaaacaaa
    11401 aaaataattc ttgctaaaac tttaagtata attaaataaa aaagcgagat tttccaaatg
    11461 aaatttgtta attttataca gggtcaaaaa cccaatctag gagtactaaa ttctagtgga
    11521 aaaattgtaa gttttgatga tcttggcatt gaagctaacg atatgaatga atttattatc
    11581 cattttgata aatttaaaca caaacttaca gacttggatt ctaaaatagc ctatgaaatt
    11641 ccacaagaaa attatctagc ccctattata gaacctcgtc aagatattat atgtcttggg
    11701 attaattttt tagatcatgc caaagaatct gccaaattta agggtgaaaa atttgaagaa
    11761 agagaatatc ctgtatattt tggaaaacgt tgcaatcaag ctacgccacc ttttggcgat
    11821 atacctttac atgcagatgt aacttctcag cttgattatg aatgcgagct tgcatttatt
    11881 ttaagtaaag atgcttataa aatcaaagct aaagatgcaa aagattatat ctttggctat
    11941 actattatca atgaaatttc agctcgcgaa cttcaaaaac gccacaaaca attctaccaa
    12001 gcaaaaagtc ttgaaggtag cactataatg ggaccttata tcacaagcgt agatgaaatt
    12061 tcttatcctc ctaaactcca acttcaaagc tatgtcaatg atgaactacg ccaaaactct
    12121 aacactcaat tgtttatttt tgatattgct tatgtcttag aagaacttag tgcaggcatg
    12181 cttttaaaag ctggaagtat tatatctatg ggaactccta gtggagtagg tatggggtta
    12241 aatccaccta cttttttaaa atcaggagat aaagtacgtt gcgttataga aaatttagga
    12301 gaactttgta ataaaataaa aaatatcaat tattaaataa tttactaaaa ttatactata
    12361 atggcatttt aaaaacttaa attaaggcag aaatttatca tgaaaaaaat aataatgatt
    12421 ttatgtttat cttatgcaaa tatagtcttt gcagtagata tgataacccc tattccaaat
    12481 tccatctctt atgataaaga aaaagctgaa cttggaaaaa gtctttatat ggataaaagt
    12541 ttatctaaag atggaaaagt ttcatgcaat acttgccata ggcttgatca acacggtgtt
    12601 gatgggcttg aattttcaat aggagttgat aatcaactcg ataaaccctt taacactcct
    12661 acaaccttta attctgtgtt taattttgtg caattttgga atggcagagc taaagattta
    12721 acagaacaag ctatgggacc ttttttcaat ccaaaagaaa tggggctaag tcctgaactt
    12781 cttttacaaa aagttaattc aaatgaaaat tatgtaaaaa cttttaaaaa actttatgga
    12841 gaagttacgg tagaaaacat agcccttgca gttgctgaat ttgaaaaaac cttaatcacc
    12901 ccaaattctc cttttgatcg ctatcttagc ggggatcaaa atgctatttc aactcaagct
    12961 aaaaaaggtt acgaagattt taaagctaat ggctgcatct cttgtcatca aggtcaaaat
    13021 ataggcggga atatgtttca aaaaatcggt atttttgaag aatacccaaa ccaagaagat
    13081 ttagggcgtt atgaaatcac aaaaagagaa gctgataaaa tggtatttaa ggttcctagt
    13141 cttagaaata tagccaaaac cgcgccttat tttcatgatg gttctatacc tactttagat
    13201 gcttgtgttc agtttatggc ttactatcaa ctaggaaaat ttttagatca agaaacagtt
    13261 gacaatatag ttgcattctt agaaagctta acaggagaat atcatgacaa ataaaaaaag
    13321 ttcatttttg ataaaattta ttatcttatc tatactagtt ttgactttca ttcttgtttt
    13381 attggctatt atttttaata actattcttc atctaaaaat aacaaagact tgataaacat
    13441 agttcagcaa ctagaaattt cagatgaaaa aatcaattct atttttcaaa atagttttaa
    13501 ttttatcaac tacgatccaa gtgtgcaagc aataaaaaaa atgcaagaaa actttacaaa
    13561 acttaaaact tttgggattg acataaacaa agcagaagaa atttttaatg ccaaactaat
    13621 ccagcttaat tattttaaat ccgcaaattc catagcagta aattcaaaac tttatttatt
    13681 tgaactagct aaaaattatt ttgaagaatt ggaacaaaac catgaaacaa ataaaaacaa
    13741 ctataaaaca atgagttcta tgttaagcgt tctttcaact gaaaatattt tacaaaaaac
    13801 aacactaaat caactcaaca atcttatgaa agaaatcaaa aatgatacaa aaagtgaaaa
    13861 tttacaactt tttttaaaac actataaaat gattgtaaag caaatttcta ttatgcaaga
    13921 taattcttct atttatgaga ataattctct catgaaagag ttaaaacaac ttaacacttt
    13981 tacccaaaat actatagaac aatctaattt atttaaattt tatatcgctt tagcagtatt
    14041 tggaatcact cttgtattat ttgtattttt tattttatta acactaaaaa aagtcatcat
    14101 gccaattcat actttagaaa aactaagcgc taatttagct agcaaagaag ccaatctaca
    14161 ctctcgttta aatatagatc caaaaagtga gcttggacaa agtgctcaat atattaattc
    14221 atttatttcc accgttcaaa actcaatcat agaagccata gaaaatgcta aatcaagtca
    14281 tcaaaattca caaaaactca aaaacaactc tatgatgctt gaaaacagct ctaattcgca
    14341 acatgaacaa attcaaggag ttaaagaaat cactcatgtt ttagatgatc atatcaatct
    14401 tgcgggaaat ttagcacaag aaagtataga aaatatgcaa gatatgcaca tactaatgga
    14461 taaagtagaa cttactctat ctgaacttgt aaatttaata aatgaaaaca atgaaaaaga
    14521 acaaaatata gtagccaata tggacaatct aacccaaagt gcggataata ttatagaaat
    14581 cacaaactcc attaaagaca tagctgatca aactaattta cttgccctaa atgcagctat
    14641 cgaagctgca agagcaggcg aacatgggcg tggatttgct gttgtagccg atgaagttgg
    14701 acagcttgct gataaaacaa gtaaatctct tttaaacatc aatgctactg ttaatactat
    14761 agtccaacaa atcaatgaca acaaagcctt aatggatctt atccatgatt ctatgaaaga
    14821 aacctcttca aaaaccaatg atttacaaca agaacttgta aattctatgc ataaattgga
    14881 aagctctata gaatcaaccc aaaccatgaa agataaaagc atggaagtaa aagataaaat
    14941 gcttatctta ggaacaaata tagataaagt taacgaactt gcaaattctg ttaaagattt
    15001 atcatgtgaa atcaataata tctctcaaaa tgttctaaat ggtgcctcta aactctccga
    15061 aaaattaagt agctttcagt aacttttttc acgttaattt aacttaacgt gaaatttcaa
    15121 taaaaatttt atttttaatt tatgtttttc aagtaaaatt agcagttttt atttcaaagg
    15181 agatactatg gagtttcttg aacttttatt agttttaatc gccttgatac tgattatcaa
    15241 aaaaccagaa aaagaaaatt tggcttttgg tttggtaatg gtagcttggc ttttaatggt
    15301 ttttttctat gttggccaca aaacaggcgc actattaaca ataatgaatc tgtaaggaag
    15361 ggctaaatga acgaaatcaa taaaacaaaa aatttctaca cactaatgtg tttagcaggc
    15421 tttttgatta tactcttgcc tgtaggtatt gcaaatttga tatttggtta tatgttgggc
    15481 gatagtcctt gcacgctttg ctggggacaa agagaagcaa tgatctttat cggtgtaatg
    15541 gcgcttttca ttgttcgtta tggtatgaaa ggtaaatacc ttgctgctct tttaatcatg
    15601 acagcagtag ggctttatca atcttttgct cactatggta atcacgctca tagagattta
    15661 gatcaaggtt ttggtttagc agtttttggt atccatactt atttttgggc tgaagtagta
    15721 ttttgggctg ttgtattgct cttaggtgtg atttttgctt ttgctcctaa atttaatgct
    15781 tttgaagctg aactaaatgg agaaaagttt agaaaatata ctaaatttag ctttgcagca
    15841 gttttaatca gtgctatcat cgtagcatca aatgttttcc aagcctttgt tagcacaggt
    15901 attcctcctt atgtaggaca aggcgatcct gtaagattta gtttaaatcc aaaatacatc
    15961 atttggagta aagaaggttg gaatggttta tggcaaaata tttctttctt aggaaaacgc
    16021 gatgttaaag ctcctgatta tgcttttgca cctgcaagtg aaaaacttgg cataaaattt
    16081 gataatgata tcaacaatgc tccatttgca aaaatcaatg atgagcttaa aatcacaaat
    16141 gaacaaacca taaattttga caaagccatc aatactcttg attatatcaa taacgaattt
    16201 gtagcaagtt ctaaatggga tgtagctttc ttagataata attttagcgt taaagaaggt
    16261 tttgaacttg atccttattt ttcagcttct atcgatccaa tcatcggtat cataccttat
    16321 atgaacgata aattcattct tatgggctca aacaaatctt tcttaagatt tgcaaaaaat
    16381 cctaatgcaa gtgaagaaga tatcgccaaa caatacgctg actttgtaaa aggtaatgat
    16441 aaatttaaag gtcaaggcga aagtttaggt cgcggaagac ttgataccgt aagagcaaaa
    16501 tttaaccatg tagcaagtat gactacagat ggaaattatc tttatcttgc aactgttcca
    16561 aacaacaaag acgctaaaac ttttgtaatc tctaaagttt ctttaaaaga tcgtgttctt
    16621 tcaggagaat ttactccaaa agcaaatctt aaagaaggta aaactttagg cgatctttat
    16681 gtaacttcta tgacttttaa agatggggaa atttatgcac ttagcaaaaa tcacaatgtg
    16741 attgccgtaa ttgatccagt caaagaagaa gtagtaaaaa ccatcgcttt cccaagctct
    16801 atcactaatg ctagaagcat tttctttaaa gatggaaaaa tcaatattct ttcttatcaa
    16861 gatggagcaa acaagcttta tactttaaac taagctttaa gtcctagtga aaactaggac
    16921 ttatatttaa tcttatcttt aaatcctgct ttttcaaaac ctcttaaacg aagcaaacaa
    16981 ctatcgcact ccccacaagc ttcatcttca ctctcataac aagaccaagt aagttctaaa
    17041 ggtacatttt cttttaaggc tagttctaca attttagctt tgtttagtct aacaagcgga
    17101 gtttttatac aaactttgaa attcttactc gtaccttcat tgataaattc ttgtgccttt
    17161 tgtataaact catcagtaca gtcaggataa ccactgccat cttcttctac cacccctata
    17221 aaaatactct cacaattttc cttttcagcc aaagatcctg ctatacttaa gaaaattcca
    17281 ttgcgaaaag gcacataagt gataggtgga gtatcgcttg tacaaagctc atttttaggg
    17341 atgtctatac ttttatcggt taaggcattg ccccctatat ccttgataaa actcacatct
    17401 aaaatataag atttttctac ttttaaagcc ttgcaaattt gcttaaaaca ttctttttct
    17461 ttttcttgag tgcgttgttc atagtcaaaa tgcaaagcga tgatttcata accttctttt
    17521 ttggccagat aagcacacaa agtactatcc ataccgccac ttatgataca aagtgctttt
    17581 ttactcattt ttatccttaa atttgctata atttcacaat tttaacgaaa atttttaaat
    17641 ttaaattgca aaaaaggcaa aagcatgata aacataaaac tcatagaaca catttttaaa
    17701 gccgcttcta tcagtcgttg gaatgattat ccaagaatgg caaatttggt tgaacttgac
    17761 aaacaagctc ataaattcat catcgcatat tttatcgcta aaatggaaaa agatgtggat
    17821 atgagagtga ttatagaagg gggaattttt gagtttttaa gtcgtgttgt ggtaactgat
    17881 atacgccctg atgtgtatca tgaaatcgtg cgtcaaaaaa aagctgaagt taatgcttgg
    17941 gttttaagca aaatcgaacc tatgatagaa gatatagaag atggggaatt tctaaagcgt
    18001 tttgaagcgt atttaaatgg taatgcttat gctaaagaaa gacttatctt aaaagcagct
    18061 tcatattttg ctacaagatg ggaatttaac atagtttatc aaacctcagc ttttttaaat
    18121 gatattgatg agattaaaaa caaagttgaa gaagaattag aagattacta tgagcttata
    18181 ggagctagaa aaatcgcttt aaatcaaaaa atagccaaaa ttattgatct tagcggaaga
    18241 cttcgctttc aaaaacgttg ggctcaaact ccacgcatac cagaaaccgc ggttttagga
    18301 catatgcttg tggtggcgat tttaggatat ttttactcac taaaaatcaa ggcttgcgat
    18361 aaaagacttg agaataattt ttattgtgct ttgtttcatg atttgccaga gtctttaaca
    18421 cgtgatatta tcagccctgt aaaatacggc attgatggac ttcatgatat cataaatgat
    18481 tatgaaatga aacttattaa tgaaagaatt ttaccctttg tacctgaggg tttaagggct
    18541 gagttttctt atattttagg cattagagaa ggtagaaacg gtgagtcaaa ttttgtaaaa
    18601 aatgagtttg aaaatcgcac ttataaaaat gctaaaatcg agctttgcag cggaagttta
    18661 agctctttta atgaaaatga atttggtgct atagatggta aggcgcttaa atactgcgat
    18721 aaaattgctg cttatataga agcaggactt agtataagtt atggtgtaaa gtctaaagaa
    18781 cttgaaagtg gttttttagg aatgcatgag ttttttaaag aaaatcctac catagatggg
    18841 gtgaattttt ttgaaatttg cgaaagttta agagaatatt ttaaaattta aataagattt
    18901 ttatactcct atttttaata tgttttaaat aaaaatatta taaattcaaa ttttattttg
    18961 tataaaacat aaaggagtta ttatgaaaaa atactttcaa aagcgctata ctttagcctt
    19021 ttttataggt atattagcgg gtattttcgg agctattgtt aaatggggtt gggaagtacc
    19081 ttttcctcca agaaatccca atgttttttg gccagcagat gctttagaac gtgttactcc
    19141 acctaaaatt tttctagaac aactaggctt acctactgat tggacttata tgttttcagg
    19201 tatgcaaatg cctttgtcaa tttttatagt acatgtcggt ttttctatta tttttggagt
    19261 ggcttattgt atgatagcgg aaaaatggca ccgtattact atgtggcaag gtgcagtttt
    19321 tggatttttt gtttatcttt ttgcccatgt tattataatg cctttaattg cagaagttcc
    19381 accactttct gaaattcctt ttgatgaaca cctgtctgaa atttttggcc atattgtttg
    19441 gctgtggggc atggaaatag ttcgtagaga tataagaaat cgtataacca aagaaataga
    19501 agaatgaaag gaagcctttc attccatatc taaaaccgca cctttactag cattgctaac
    19561 aagtttttga tacattctaa gccatcttga agacacctct ttttgaggca atgcaaattc
    19621 ttttttacgt ttagcaattt cttcttcact tacatttgca tggatagtat aagcatctac
    19681 atcaatttct atttcatctc catcttttaa aagtcctata agaccacctt cagctgcttc
    19741 aggggaaata tgaccgacgc ttaaacccct tgtagcccca ctaaaacgac catcggtgat
    19801 taaagctaca tcagcaccta aacccatacc cattaaaagt gaagtaggac ttaacatttc
    19861 ttgcatacca ggaccccctt ttggaccttc atagcgtatt acacaaacat ttcctttttg
    19921 caccttgcct ttaataatgc cttttatagc ttcatcttga gagttaaaac aaacagcttt
    19981 gcctttaaat tttctttctc cgattattcc tgcggttttt ataacgcaac cttgcttggc
    20041 taaatttcca aacaaaatgg caagcccacc tacttttgag taagcattat ctactttacg
    20101 aatgatattt tcatctttga ttttggcatt ttttaagcgt tctttgagac tttctcctgt
    20161 aatggtcagt gcatcaagtt ctaaaatatg tccttgtctg cttgaaattt cagccataac
    20221 tgcactcaca ccgcctgctt tgtggatatc atccatataa acactattta gcgatggggc
    20281 tatttttgct atgtgtgcaa ctttgcttga gatgaaattt aaatctttaa tatctagtgc
    20341 tacccctgct tcacgcgaaa tggcaagcat gtgtaaaact gtattgctac ttccacccat
    20401 tgccatatct actaccatag cattacgcac agctttttga gtgatgatat tacgaatttt
    20461 aaaacgttca tctagggcga tttcacaaat acgacgcgct gcttttctta aaagctcttc
    20521 tctttcttta cttaaagcta aaatggttcc attgccttct agtgctatac ccatagcttc
    20581 gcataaggta ttcatagaat ttgctgtaaa cattcccgaa caagatccac cacttggaca
    20641 ggctgaacat tctatatctt taaattcttc ttcactaatt tttttggatt cataagcccc
    20701 tacagcttca aaaacagagc taaggctgat cttttctcct tttttggtta ctcctgaagc
    20761 cataggccca ccacttacaa aaatggttgg aacattgacc cttaaagctc ccattaacat
    20821 accaggagta attttatcgc agtttggaat acagattaaa gcatcaagtt gatgagcatt
    20881 catcaccgtt tcaatagaat ttgcgataag ttcacgactt ggtaaagaat aaagcatacc
    20941 ttcatgtccc atagctatac catcatctac gcctatggta ttaaactcaa aaggtacgca
    21001 accatttttg cgtatctcat ctttaatgat tttagcataa tcatttaaaa aataatgccc
    21061 tgggattata tctatatagc tatttgctac acctataaaa ggtttgtcaa aatcttcatc
    21121 tttcaaacca caagcacgaa gtaaagaacg attaggtgct cttaaatgtc ctttttttat
    21181 cgcatcgctt ctcattgtaa ctcctgataa taatttttta aaattatatt tagcaaagct
    21241 taatttttgt gaaatttatt ttgatataca ttttcataaa tgataaaaat tattaattga
    21301 caaaaatatt tttttataat acaatacttt ttgataatca aaaaaggagt caaaatgaga
    21361 caatatgaaa cctataaatg ccaaaaatgt ggcaatgaag tagaagttca aaatgtaggt
    21421 ggcggtaagc ttagttgttg tggtgaagaa atgaaatgta tcactacaga tttaactgta
    21481 gtaaatttaa tgaaagcttt tgcaggcgaa tctatggcaa gaaacaaata cgatttattt
    21541 gctgatgtag ctgaagaaga aggttggcat gcggttgcta gacattttag agaagcggct
    21601 gaaaatgaaa aatggcatgc aagagcagaa tttaaagctt atcatgaaat cgttgatggc
    21661 aaacctttag aagtaactac aaaaaaccta gtaactgctg cagaaggtga aaactatgag
    21721 cacacaacta tgtatccaaa ttttgcaaaa atcgctgaag atgaaggcaa aaaggctata
    21781 gcgagattat ttacagctat tggtaaagta gaaatcgaac acgaaagaga atatctagcg
    21841 cttaaaaaaa tgctcgaaga agaagaattt tttaatagtg aagtagaaga attatgggtt
    21901 tgtgaagtat gcggacatat acatcgtggc aaaaaagctc cagcagcctg tcctttatgt
    21961 aaagcaccaa aagagtattt taaacgcgaa tttttgggtt aagttaagaa attcttatcc
    22021 tttttaagat aatattataa ttatttttta ataaaaggat aagaaaatga aaaaattact
    22081 atttttattt tttgctttaa cggcttttct ctttggtgct gtaaatatca acactgcaac
    22141 actaaaagaa ttaaaaagtt taaatggtat tggcgaagct aaagctaaag cgattttaga
    22201 ataccgcaaa gaagcaaatt ttacaagtat tgatgatctt aaaaaagtta aaggcatagg
    22261 tgataagctt tttgaaaaaa tcaaaaatga tatcacaata gaataaaagg gcatttttgc
    22321 ccttcttttt agaaaaattt gaaaacttta tttgacacaa aagaactttt aaacgaattt
    22381 gatataaatt taatcggtat tgatgaagca ggacgcggtg ctttagcagg tcctatgatg
    22441 atggcagctt gcaaactgaa caaacaactt gatgggttgt gtgattctaa aaaactaagc
    22501 gaaaaaaaac gcgaagaact ttatgaaatc atcatcaaaa attcaaacta tctcatactt
    22561 gctttttctt cagaacaaat cgacgcacta ggcttaagca cttgtttaaa aaaaggctta
    22621 aaacttataa aaaagcattt taaaacagaa aataacttct tatatgatgg aaacaccaac
    22681 ctaggtataa acgggataaa aacacaaatc aaagccgaca ctagcatttt gcaagtaagt
    22741 gcagctagca tactcgcaaa agttagtaaa gatagagtga tgaatttctt agctaaagac
    22801 tttccttgtt atgaatttga aaaaaacaaa gcctatggca caaaagctca taaagaattt
    22861 atagctaaat ttggaatttg caaactccac cgaaaaagtt ttaaactttt atgattattt
    22921 tgctaaattt tgatgcaaac tcaaagcaca ttctatacca tcttttatag cccaaacaac
    22981 taaagattgt ccttttctag catctccaca agcaaagatt tttttatgag tggtttggaa
    23041 attttctgtg cttatgttgt ttttctcatc taatttcact ccaaaatttt tagagatagc
    23101 ttcttcgcac ccgctaaaac ccatagctaa aagcactaaa tccgctttat aagttttttt
    23161 agaatttgaa atttcgacat ttatagcttt gccttcttta aactcgcgtt ttaaatcatt
    23221 tgcttcaaca ccttctacat gagtttttcc taaaaatttc tttgtcattt tttgatattc
    23281 cctaggatct ttgccatata cagcaatggc ttcttctaaa ccataatcag tagtaaaaat
    23341 gtcagctttt aaaggccaag gattgttttg gcttctttgc aaaggtcttt ttggacttct
    23401 ttcaaaacgc actatagatt tagccccttg tcttgtcgct acagcgatac aatccacact
    23461 tgtatccccg cttcctataa ccaagacatt tttacctttg gccatatctg cacccttgcc
    23521 tgtttttaac aaagttttgg tattttgcgt taaaaaatca agggcaaatt caaccccttt
    23581 tagctttcta ccttctatat caagatctat aggcttactt gctcctgtac aaagcaccaa
    23641 agcatcaaat tcttttagaa gttttgaaac cttatctttg ctgtctatat tttcattcac
    23701 tttaaattca atcccacttt ttttaagcaa atccacccgt ctttgaacta tacttttatc
    23761 aagcttcata tcagggatgc catacatcaa aagtccgcct attttatcgc ttctttcaaa
    23821 aacacttact ttataaccta gtgaatttaa agtattggca caagcaagcc cagcaggccc
    23881 acttcctatg acagcgattt ttttgccatt gtattgctta ggtttattta ctcttactaa
    23941 attttcctta aaagcatttt ctataatgga taattcatta ttttttatgc tcacactaac
    24001 accatttatc gcacacacac aagaatcctc acaaggagca gggcaaacac gaccggtaaa
    24061 ttcaggaaaa ggattggtaa gatcaagtct ttcataagct tctttccata aagaacgata
    24121 aacaagatcg ttccattcag gaatgagatt gtttaaagga cagcccacat cttttccttc
    24181 gctcatcaca cccgtatgac aaaaagctac cccacaatcc atacatcgtc caccttgaac
    24241 ttcttgttct tttttatcca aaggtatagt aaattctttg aaatttaaaa ccctttcctt
    24301 aggagcaatt tttttaaaat ccattctttt aaagtctaaa aaacctcttg catttcccat
    24361 ttttactcct tatttaatat actttttagc ttgtctataa taattttttt tctttcttct
    24421 ataaaattat taaaattttc caaagataaa tcaacatcag gaattaagtg ttttcctaaa
    24481 aattcctttc tatttccatt acatttttca tttacccatt gctttaaagg tttgttattt
    24541 ttagattcat tttcatttgc atcaagcatt tgtaaatttg gtaaagaatc ataaatatta
    24601 aaagaaatac aattatctgt agctttataa agtttttcat attctttata tgcggactct
    24661 ggatgcaaat gatctttatg aaaattatta tttttataat ctaaatttgg ataaagtaaa
    24721 gataacacag caaacgcttc aggactattt ttacggcatt ctatgacatt attttctaaa
    24781 tattcttcat ctattgtttg tatatatttt gcctcttttt caatttcttc caatggaaat
    24841 aattctattt ctctatcaaa aaagccacta ttttgcttaa aatctttaat aaaagcttta
    24901 cgcatgttag acaataccgt atcactactt ccaccaaaag gctttaaaat aattgccctt
    24961 aacaaccatt tttttattat agctctattt tcattacact tgacagaatc tactatatta
    25021 tttgtcaaat ttttatgata aataaaatat aaaatgggta aaatagcatt atttgatgaa
    25081 agtgtttttg cttcaaatcc aaaacttcta agcaatctaa atgtttcaat aaaagcattt
    25141 tttatgcctt cccatttagc ttctatggat tctataaaat ttttatcaaa acta
//
LOCUS       DARBBO010000014        25082 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.014, whole genome shotgun sequence.
ACCESSION   DARBBO010000014 DARBBO010000000
VERSION     DARBBO010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25082
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.014"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..418
                     /locus_tag="SB854_000428"
     CDS             <1..418
                     /locus_tag="SB854_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEG0956469.1"
                     /translation="FSILGVFYIFLYMHHFANKFNNLINIILLNIWTFFAMVLPVLYF
                     FPLISYQQILGIILSGIFVIFYPLVLFLHLINYGDLLNFILDEFFKFKIYGTNIHIPF
                     WIFISYLIASLISVRFKYLAFLCIFANFIPFIMIVI"
     gene            complement(362..1168)
                     /locus_tag="SB854_000429"
     CDS             complement(362..1168)
                     /locus_tag="SB854_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEG0956470.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(1172..2554)
                     /locus_tag="SB854_000430"
     CDS             complement(1172..2554)
                     /locus_tag="SB854_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG0956471.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            complement(2557..3282)
                     /locus_tag="SB854_000431"
     CDS             complement(2557..3282)
                     /locus_tag="SB854_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HEG0956472.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDLR
                     QFCDDNAVGILVVALENHAEVVDCQDFNKLYEVPISKPTSVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            3404..4564
                     /locus_tag="SB854_000432"
     CDS             3404..4564
                     /locus_tag="SB854_000432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG0956473.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            complement(4561..4764)
                     /locus_tag="SB854_000433"
     CDS             complement(4561..4764)
                     /locus_tag="SB854_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956474.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEINEK
                     EKEELATLLNSLINAKDKALLSN"
     gene            complement(4766..5446)
                     /locus_tag="SB854_000434"
     CDS             complement(4766..5446)
                     /locus_tag="SB854_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="laccase domain-containing protein"
                     /protein_id="HEG0956475.1"
                     /translation="MGRSRKNFLSLLENDKVVIFCAFDKDYNVFRAKVYSENLFYHLG
                     FKDIKKCVFMDQIHSHKVIIYEKNLKNLSCDGLISKEKNIALCVLSADCLPLILYHES
                     GIIAALHSGRKGSFENILKECVDQITMQNSHLDKNKFHLFILPGICAKNYEIDGEILE
                     FAKKEFKEFVQDDKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTPKRF
                     VSVVYLKD"
     gene            complement(5410..6021)
                     /locus_tag="SB854_000435"
     CDS             complement(5410..6021)
                     /locus_tag="SB854_000435"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEG0956476.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGACLSVT
                     KLYEGGFEVELSRESRTHIAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFYISLPKEAMKFMAEKGSIAVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            complement(6030..8570)
                     /locus_tag="SB854_000436"
     CDS             complement(6030..8570)
                     /locus_tag="SB854_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956477.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLRFSSLELQANIANMADFNLKGALSPFKLGFDLDYLISLNQNYAKNLG
                     LNLNQNLSFVGKIQGKASDFTLDGKGYLLGSNVLLNARMYNYSPIALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTNYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDISKNALSTDFNLSIPSLVKLET
                     LTKTRLNGNLGVIGQTSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKLNTNELKKIAKIELPNTIFS
                     FDAKANAKNSNIAYNALLASNLLNIKKLQGSYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLAAKAHIIGTQIQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     AGMPNYASGIVNAKINLDNIDFNNLNGKANLEAKGILNATTLSKILNKNFPNNTSYDL
                     NTKINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFNLKINDFSKLGFLLDR
                     KLKGKAEFNGKVGFDKSLNFVVNSPNLFEGRLQSTLKDNLLLADLNGVDLSSLAQGLD
                     FMDVYQGKADVKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILTLKDITNDVYRTA
                     NAKALIKKENIKLDLNMQADRSYILVQSGALNSKSGALNLPFDIKLDRANFKGSITGT
                     TENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNKIF"
     gene            8732..8992
                     /gene="groES"
                     /locus_tag="SB854_000437"
     CDS             8732..8992
                     /gene="groES"
                     /locus_tag="SB854_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEG0956478.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            9013..10650
                     /gene="groL"
                     /locus_tag="SB854_000438"
     CDS             9013..10650
                     /gene="groL"
                     /locus_tag="SB854_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEG0956479.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(10693..11883)
                     /gene="dccS"
                     /locus_tag="SB854_000439"
     CDS             complement(10693..11883)
                     /gene="dccS"
                     /locus_tag="SB854_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HEG0956480.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDVKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     GFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNAKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKANFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(11876..12541)
                     /gene="dccR"
                     /locus_tag="SB854_000440"
     CDS             complement(11876..12541)
                     /gene="dccR"
                     /locus_tag="SB854_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HEG0956481.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            12689..13288
                     /locus_tag="SB854_000441"
     CDS             12689..13288
                     /locus_tag="SB854_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG0956482.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDVSFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
     gene            13299..13547
                     /locus_tag="SB854_000442"
     CDS             13299..13547
                     /locus_tag="SB854_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HEG0956483.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(13638..13712)
                     /locus_tag="SB854_000443"
     tRNA            complement(13638..13712)
                     /locus_tag="SB854_000443"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(13678..13680),aa:Asn,seq:gtt)
     gene            complement(13805..15052)
                     /locus_tag="SB854_000444"
     CDS             complement(13805..15052)
                     /locus_tag="SB854_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG0956484.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVVLGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            complement(15049..15723)
                     /locus_tag="SB854_000445"
     CDS             complement(15049..15723)
                     /locus_tag="SB854_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG0956485.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            complement(15799..17217)
                     /gene="htrA"
                     /locus_tag="SB854_000446"
     CDS             complement(15799..17217)
                     /gene="htrA"
                     /locus_tag="SB854_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HEG0956486.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFSQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNDKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLLLK"
     gene            17417..18310
                     /locus_tag="SB854_000447"
     CDS             17417..18310
                     /locus_tag="SB854_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HEG0956487.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSDIYGDMYLILNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            18326..18700
                     /gene="hspR"
                     /locus_tag="SB854_000448"
     CDS             18326..18700
                     /gene="hspR"
                     /locus_tag="SB854_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HEG0956488.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRLELSKQQDK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            18707..20332
                     /locus_tag="SB854_000449"
     CDS             18707..20332
                     /locus_tag="SB854_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG0956489.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTTLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            20342..20674
                     /locus_tag="SB854_000450"
     CDS             20342..20674
                     /locus_tag="SB854_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956490.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKNELLNLANALDKQKKQGGKKEKH
                     KNYLKDYE"
     gene            20671..21291
                     /locus_tag="SB854_000451"
     CDS             20671..21291
                     /locus_tag="SB854_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG0956491.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSNFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKSKNCFL
                     AIATNAPQSSLSNILKKHDIIPYFDKILGVSLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKNLKENEFSNSSELKDFLQKYL"
     gene            21347..23341
                     /locus_tag="SB854_000452"
     CDS             21347..23341
                     /locus_tag="SB854_000452"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEG0956492.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWNNVLEEYRLVSDFKF
                     YYTPRRLVFFHENFADKQEDSFAEFIGAPKNVAYKDGVLTPAGQSFLQKARISENELS
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMVEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSTKKTFIHRSVSYDLQDFNNAKEYFELLKKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYQICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSNHYKSFD
                     IQILKNFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIKLSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            23338..24159
                     /locus_tag="SB854_000453"
     CDS             23338..24159
                     /locus_tag="SB854_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG0956493.1"
                     /translation="MKALWLFLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNNG
                     KNIPTFTHPKNQEKVLAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTIQERITKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAATGTPIYAANSGIVKIAKDRYFAGNSVVIDHGFGIYSQYYHLS
                     KIDVKVGQKIKKGELIGLSGASGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFQ"
     gene            24156..>25082
                     /locus_tag="SB854_000454"
     CDS             24156..>25082
                     /locus_tag="SB854_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEG0956494.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDKKILQLPLELVEIGANEGYLSRDFLSALLELRPEIFSQISFFVIEPHEKLR
                     TLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFACELIDHDKMAFVENFKLIFK
                     NMDENLITKCKALNLKKGELSLELENFFKDLNQTCERFIFAGFDYGTLNPQSFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLAFMDFGFE
                     DLLEYAKNKNIKTYESFLSQAKILFFNFDEKFH"
BASE COUNT         9099 a         3965 c         3494 g         8524 t
ORIGIN      
        1 attttctatt ttaggtgttt tttatatttt tttatatatg catcattttg caaataaatt
       61 taataatctt ataaatatta ttttgcttaa tatttggact ttttttgcta tggttttgcc
      121 tgtgctttat ttttttccac ttataagcta ccaacaaatt ttaggtatta ttttgagtgg
      181 aatttttgta atattttatc ctttagtatt atttttgcat cttataaact atggagattt
      241 gctcaatttt atcttagatg aattttttaa atttaaaatt tatggaacta atatccatat
      301 cccattttgg atttttataa gttatcttat tgcttcttta atctctgtgc gatttaaata
      361 tctagctttt ctttgtattt ttgcgaattt tattcccttc attatgattg tgatttagaa
      421 aataatagag tttaagccca aaaagataaa taatccaaga aatataaatc caaataaaaa
      481 agaataaaat agtagaaaaa gatccataaa cgctagcgta tgttttatta tataccacgt
      541 aatatacaaa taaatttttt cctatatacc aaatagtacc cgctccaaaa gatactaaag
      601 ctaaactttt aagagttccc ttatgaacag aacttgaata agatataaaa aataaacccc
      661 aaataattac aaagggtaaa atttcaaaaa aattaaaccc tattttataa tcatctaaag
      721 tttgttggat aaaacctgaa atataaaaac taagcccaag ccccaaagga acaagagtta
      781 aaagagtcca ataagaacta atactttgcc aaagtccttt aggttcattt ttagtaatgc
      841 gattgattac aaaatcatag cctgaaaaaa aagctaaaga agtaaatgcc atagcaataa
      901 gacctacaat acccaaattt acactatttt ttaaaaaagt atcgatgtag gtagcaacaa
      961 catcttgttg cgttggtatt aaaaaagcaa aaattacttg ctttgctttt tcataataag
     1021 ctttaaaact ggaaatttgc gtaaaaacag aaaaacatac aaataaaata ggtattaaag
     1081 ataatacagt ataaaaacta agcgctgctg cataatttaa aatttcctta tcacgcaaat
     1141 ttagtaaaat agtaaaaaaa tttttcacct tctaaagtcc cattttaaaa ggatttagta
     1201 tattatttgg atcaaaagct tttttaatat ttctcattaa attcatttcg gcttcagaaa
     1261 aagctaaatt cataaaaggt gccttagaga gtccgatacc atgctctccg cttaaagttc
     1321 ctccaagttt cactgttaat ttaaaaatct cttccacagc ttcatagcct tttttcacct
     1381 gctctttatc atttttatca ggaaccataa cattagtatg cacatttcca tcccctgtat
     1441 gtccaaaaca aggaatttta aaaccatatt ttttagaaat ctcatctata ccttcaagta
     1501 aagtaggtag tttagaacgc ggaactgtaa tatcttcatt aagttttaaa gttccataca
     1561 tggcaatgct ttgagaacaa tttcttctag caaaccaaat atctgcggtt tcttgttcat
     1621 cttttgctat tttaaattcg ctagcgccag cttctaaaaa ataatattct aaatttctta
     1681 aatcctcatc aatagcctct ttaacattac catccacatc agcaatcaaa atagctccag
     1741 cttctatagg caaaccttta ttaaatttgc tctcaactgc tctaatgcta agattgtcta
     1801 aaaattccat agatacagga cttacaccgc tagcaagact tttgtaaacc gcattcatag
     1861 cactttttac acttggaaaa atagcaaaag cagttttttt aaatttaggc aaaggtatta
     1921 attttaaagt aagctcactt aaaactgcca aagaaccttc actagcgatt aaaattcctg
     1981 ccaaattata acctgctaca tctttaatag tgcgtttccc tgcacgaatg atttctccgc
     2041 taggcaaaac agcccttaaa gccatcacat aatcttttgt aatgccatat tttgcagctc
     2101 tcattccccc agcattttcg cttacattac cccctaagct tgaatactcc atgctagcag
     2161 ggtcaggtgg gtaaaaaagt ccatatttag ccacttcttt ttgtaaatgt atattaataa
     2221 ccccaggttg cacaacagcc actaaatttt caagatcaat ttctaaaatt ttattcatat
     2281 gcttttcaaa agcaagcacc accccgccat taacagctaa agctcctcct gtaaaaccag
     2341 atcctgagcc tcgaggtatg actatgatat tattttcatt gcaaaatttt aaaatttgag
     2401 caatatcttc ttcatttctt ggaaaaagaa ccccatcagg taaataatgt ttttttgtcg
     2461 catcatagct ataagctctt ttgtgaattt catcaaaata agcgttttct tctcctaaaa
     2521 atcgtttaaa atattgttca aattcttttt tcatgtttat tgcaccttag gaagattaat
     2581 caaagcatca taatacctat aataatttcc tatttcttga gagttaaaat caaaaaaatt
     2641 acttttatat ccacctatac gagaataaaa aggaacctga acgctagttg gcttgcttat
     2701 aggcacttca taaagcttat taaaatcttg acaatccaca acttctgcat gattttccaa
     2761 agccacaacc aaaatgccga ccgcattatc atcacaaaat tgcctaagat ctgaacgctt
     2821 aggagaaaga gtagccgttc taattaattg tgctccaaaa atatcaatat gggtaaaata
     2881 tatctgcgga aattctctaa caagttcatt ataagtttgt tcatcaggag caattaccaa
     2941 tcctctatca taaagaaaat ttaaaacaac ctcatcacct actttaggta aaacatttgg
     3001 taaaggcaaa gcatcttgct taagagctga aaaaacacta aattctaatt ttgccaaacc
     3061 atttttttta tctataacac ttgctctagc gatgatactt tgcgaattgc taaaatgttg
     3121 cactactacg ccacttgaat aaagttttat atcatcacta tctttaatat aaccataaat
     3181 atcatcaact tttacaagtt cactttttat aggttttaaa tcaaatccaa ccgcaaagag
     3241 gctaaggttt aaagctaaaa aacacactat agttttaaac aaatttgctc cttaaataaa
     3301 aatttataga attataatcc ttttttgtta agcaattgta agaaaaataa agtaaaatat
     3361 agctttcaaa tttcaaaatt cttttaaaaa ttaaggttat ctcatgaaaa aattattgct
     3421 tttatttatt tttgttgttc aaagttttgc agctttaagt gttgaagagc taacttggga
     3481 taatggagat accttgctta aattcttaca aagaaattcc atacctatgt cgctttatta
     3541 tggacttgat agagaagatc aagaacttgc ttctgatata gcctataaaa taaaatatca
     3601 agttttaaaa gatgaaaaca acaacataga acaagtttta attccaatta gtgatgattt
     3661 acaaattcat atctataaag ataaagatgg acaatacact cttgctttta ctcctgtatc
     3721 ttatcaaaaa gaagatagaa ttttacattt aaccattaaa agctctgctt atcaagatgt
     3781 ctatgaagaa agtggtagca gtactttagc tcgtgctatg gttcgtgctt ttcgaggaag
     3841 tataaatttt cgcaatatcc aaaaaggtga tgaagtaacc ctatattatg aacaaaaaag
     3901 acgcatgggt aaactttggg gcgatataaa tataaaaatg gcaatggtag aaattaataa
     3961 aagcgctaga gaagtctttt cttataatga tatattctat gatcgcgatg gcaaagaatt
     4021 agaatctttt ttacttacaa aacctgtgaa ctacactaga atttcctctc cttttacaac
     4081 agcaagatat catcctatat taaaacgcta tcgcgcccat cttggtatag actatgctgc
     4141 acctactgga actcctgtaa aaagtgctgg caaaggagta gtaaccttta taggcacaaa
     4201 aggtggttat ggaaatgtaa ttcaaatcaa gcatgactca ggttatatga ctttatatgc
     4261 tcatcttagt cgttttgcaa aaattaaaaa cggacaaaag gtaaatcaag gacaagtaat
     4321 tgcatatgtt ggttcaacag gtatgagcac aggtcctcat ttgcattttg gagtatattt
     4381 aaataataaa gctataaatc ctgcatctgt tgtaaaaatc gccaaatcag aacttagtgg
     4441 aaaagcaaaa gagaatttta aacatatcat agctggatac gagcaggttg ttaaagaagc
     4501 cctagcctcg aatcaaccta atcctccaaa agaagaagat tttgaaaact atatagaatt
     4561 ttaattactc aacaacgctt tatcttttgc attgattaaa gaatttagaa gagttgcaag
     4621 ctcttctttt tctttttcat taatttcaca aaaatctgca tcaatcaatt gttttaccaa
     4681 agcttcattt aacaaatctc catcgccaaa ttctctagct ttttgaatga tttttaacac
     4741 tcttaaatct tttctttcat acattttaat cctttaaata aaccacactc acaaaacgct
     4801 taggcgtttt atcacgacga taagaaaaaa aactctcatc atcaaaacta caaattccac
     4861 aatctttaat attttcaatg cctaaatttt gagcttgaaa ttttactaaa gcttttaaat
     4921 caagtttatc atcttgaaca aattctttaa attctttttt agcaaattct aaaatttctc
     4981 catctatttc ataattttta gcacaaattc caggcaggat aaaaagatga aatttattct
     5041 tatctaaatg tgaattttgc atagtaattt gatcaacgca ttcttttagg atattttcaa
     5101 agcttccttt tctacctgaa tgcaaagctg ctataatgcc gctttcatga tataagatca
     5161 aaggcagaca atccgcactt aaaacacaaa gagcgatatt tttttcttta cttataagcc
     5221 catcacagct aagatttttt aaattttttt cataaatgat aactttatga gagtgaattt
     5281 gatccataaa aacacatttt ttaatatctt taaaacctaa atgataaaat aaattctcac
     5341 tataaacctt agctctaaaa acattataat ccttatcaaa agcacaaaaa ataacgactt
     5401 tatcattttc taataaagat aagaaattct ttcgacttct tcccatgata atcctttgtt
     5461 tttaccttgc aattgtgcat aaatataacg agcaagtaaa tcactttcta tatttatttt
     5521 tctacctact tgatagtctt taaaaagcgt ttctttaaaa gtaataggaa taatagtaag
     5581 cctaatacca ttttttaaaa tttcattgat agtaagactt actccatcaa cagctatact
     5641 tcctttttct gccataaatt tcatagcttc tttaggtaaa gatatataaa aatccactcc
     5701 attttcatct ttttgaatct tttcaagtgt gccgataaaa tcaatatgtc cttgcataag
     5761 atgtccatca attctatcgc catatcttaa agcaggttct atatgaactt tatcttttaa
     5821 attctctata gctatatgag tgcgactttc acgagaaagc tccacttcaa aacccccttc
     5881 ataaagtttt gttacactta aacaagctcc atttacggct atgctatcgc caagatttgg
     5941 gcgatatttt gcttttaagc ttaaagtatt gttttgataa gattgaactt tagcaatttc
     6001 tcttatgagt ccattaaaca ttttttacct taaaaaatct tatttaataa tttattcacc
     6061 gctttatcaa ctttatcgcc cgtactttta gcaccatcac tcacaccgcc acctactaca
     6121 tttttaatag aatttaacac acttcctgca tttaaattca ctttaggatt ttccgtagtt
     6181 cctgtaatac ttcctttaaa attggctcta tcgagtttaa tatcaaaagg caaatttaaa
     6241 gctccgcttt tagaatttaa agctcctgat tgtactaaaa tataagaacg atctgcttgc
     6301 atattaagat caagtttgat attttctttt ttaatcaaag ctttagcatt agcagtgcga
     6361 taaacatcat tggtaatatc ttttagtgtt aaaattttta aagcattggt aataagattt
     6421 ggttttaatt taccctcttt catatccaaa ttaacctctc cttcttcact taaaagattg
     6481 taatttgcct tcacatctgc cttaccttga taaacatcca taaaatctaa accttgagct
     6541 agactactta aatccactcc atttaaatca gcaagcaaaa ggttatcttt aagtgtgctt
     6601 tgaagcctcc cttcaaataa atttggacta tttacaacaa aatttaaact cttatcaaaa
     6661 cctacctttc cattaaattc tgccttacct ttaagttttc tatccaacaa aaagcctagt
     6721 tttgaaaaat catttatctt tagattaaaa tccgaattta aaagcatttt gcttatatca
     6781 aaacttcctt gtagctttgt aagatcagct aaagatgaat ttaaaacaga atcaaattga
     6841 gcgatattgt ttttaaaatt aattttggta tttaaatcat aacttgtatt gtttggaaaa
     6901 tttttattta aaattttact taaagttgta gcatttaaaa tacctttagc ttctaaattt
     6961 gctttaccat taaggttgtt aaaatcgata ttatctaaat taatttttgc attaacaatc
     7021 ccactggcat aatttggcat acctgctata acaaaaagtt tagataaatc aagtttatca
     7081 atgtttaaat caagtttttt accatttgaa tcagccttga ttacaccatc tgccaaattt
     7141 gcatttgcat ttaaattttg tatttgagtg cctataatat gagcttttgc agcaagatct
     7201 gccttgcctt gtaatttttg tcctgctata gcactaaact gagataaatc atcgataaaa
     7261 gcatttaaat ctgtatttaa ctcactattt tttaaattat aacttccttg aagttttttg
     7321 atattaagca aatttgaagc aagcaaagca ttgtaagcaa tattgctatt ttttgcattt
     7381 gctttagcgt caaaactaaa aattgtattt ggaagctcta ttttagctat ttttttaagc
     7441 tcattggtgt taagttttgc attgtttatt tttgcttcaa gatcaaaatt agaaaaatcc
     7501 aaatctgcat ttagaagttt agcatttaaa tttccagaaa ccaaagctcc atatcctgca
     7561 agagctaata atttttccaa acttgcttca ttaatatctg caaaaatttt attatttttc
     7621 aaacttgcct ttacctctcc accaagtccg ataacttgag catttaaact tgataaggca
     7681 ttatttacaa cacttgtttg acctatcaca cccaaattac catttagtct agtttttgta
     7741 agtgtttcaa gctttacaag agaaggaata cttaaattaa aatcagtact taaagcattc
     7801 ttgctaatat cataaagagt tttttgggtt tgtaagttaa gataatcatt gtaaatttta
     7861 cttacagcat aaatcttatc ttctttaaca ttggccaaaa tttctgcttt aggattagaa
     7921 tttaaaggca agtctaaaga aaaatctttt tttatcgcct catagtttat ataatttgta
     7981 tcaagtttta tgatgatatt cccatcaggt tttaaattct gtgctgaaat ttttgcttga
     8041 gcatttaaaa aacctttagc gtaactaggg taagataaaa gatgaagtat ttcttctatc
     8101 ttaagatttt gcgcatctaa atttaaagca atagggctat aattatacat tcttgcattt
     8161 aaaagtacat ttgaacctaa caaataaccc tttccatcta aagtaaaatc acttgcttta
     8221 ccttgaatct taccgacaaa agaaaggttt tgatttaaat ttaaacctaa atttttagca
     8281 taattttgat ttaaagaaat aagatagtca agatcaaatc caagcttaaa aggactcaaa
     8341 gctcccttaa gattaaaatc tgccatattt gcgatatttg cttgcaattc aagacttgaa
     8401 aaacgtaaat taaaatgcgt gatatttaca tctaatcccg cactttcttt gatctttttt
     8461 tgcgctatat ttgccactat attattacca aaacttgtga aaagtatggt ataaatagca
     8521 attaaaagca caacaacaaa agctataact ccataaaaaa tctttttcat ttttatcctt
     8581 tagtttattt tataaaataa ctttagtcta taaaactaaa cttttataaa tattttaatt
     8641 taaagtattg acaaaattca ttttttatag tatgatatta tcactctaaa taaaagagtg
     8701 ctaaaatcaa tatttttaag gatggacaaa aatgaatttt caacctttag gaaagcgtgt
     8761 tctagttaaa cgcgtagaag aaactaaaac aacagcctca ggcataatta taccagataa
     8821 tgctaaagaa aagcctttaa tgggtgaagt agtagcagta agtaaagaaa tcactgatat
     8881 tgcaaatggt gataaaatcg tgtttgctaa atacggtgga acagaaatta aacttgataa
     8941 taatgaatat ttagttttaa atttagatga tatcttagga attttaaaat aatttataaa
     9001 aaaggataaa aaatggcaaa agaaattatt ttttcagatg aagcaagaaa taaactttat
     9061 gagggcgtta aaaaacttaa tgacgcggta aaagtaacta tggggccaag aggacgcaat
     9121 gttttaatcc aaaaaagctt tggtgctcca agcattacta aagatggcgt aagtgttgct
     9181 aaagaagtag agcttaaaga tagtcttgaa aatatgggcg cttcacttgt aagagaagta
     9241 gcgagtaaaa cagctgatca agcaggcgat ggaacaacta ctgcaacggt tttagctcat
     9301 gcaattttca aagaaggttt aagaaatatc acagcaggtg caaatcctat cgaggtaaaa
     9361 cgcggtatgg ataaagcttg cgaagctata gtagcagaac ttaaaaaact ttctcgcgaa
     9421 gtaaaagata aaaaagaaat tgcacaagtt gctacaatct cagccaactc tgatgaaaaa
     9481 atcggaaatt taatcgctga tgctatggaa aaagtgggca aagatggtgt tatcactgtt
     9541 gaagaggcaa aatcaatcaa tgatgaatta aatgtagttg aaggtatgca atttgacaga
     9601 ggttatttaa gcccttattt tatcactaat gcagaaaaaa tgacagtaga gctttcaagc
     9661 ccttatatcc tgctttttga taaaaaaatt acaaatttaa aagatttatt accggtttta
     9721 gaacaaattc aaaaaacagg caaaccactt ttaattatcg ctgaagatat tgaaggtgaa
     9781 gcgcttgcaa ctttggttgt aaataaactt cgcggtgttc ttaatatttc agcagtgaaa
     9841 gctccaggtt ttggcgatag aagaaaagct atgcttgaag atatagcgat tttaacaggt
     9901 ggagaagtga tttctgaaga acttggaaga actcttgaaa gtgcgactat acaagatctt
     9961 ggacaagctt ctagtgtaat catcgataaa gacaatacaa ccatagtaaa tggtgcaggc
    10021 gaaaaagcaa atattgatgc gagagtcaat caaatcaaag cacaaattgc tgaaacaact
    10081 tcagattatg acagagaaaa attacaagaa agacttgcaa aattaagtgg tggtgttgca
    10141 gttattaaag taggtgcagc aactgaaact gaaatgaaag agaaaaaaga tcgcgttgac
    10201 gatgctttaa gcgctactaa agcagcagtt gaagaaggta tagtaatcgg tggtggtgca
    10261 gcgcttatca aagcaaaagc taaaatcaaa cttgatctac agggtgatga agcaattggc
    10321 gcagctatcg ttgaaagagc tttaagagca cctttaagac aaattgctga aaatgcagga
    10381 tttgatgcag gtgtggttgt aaatagcgta gaaaatgcta aagatgaaaa cacaggattt
    10441 gatgctgcaa aaggtgaata tgttaatatg cttgaaagtg gaattatcga tcctgttaaa
    10501 gtagaaagag tagctttact caatgcagtt tctgtagcta gtatgctttt aaccacagaa
    10561 gcaacaatta gtgaaattaa agaagataaa cctactatgc cagatatgag cggtatggga
    10621 ggaatgggtg gcatgggcgg aatgatgtaa tatctgctct aacctcttat cagcaaggat
    10681 tttccttgct gattaccaat ttaatttaaa aacactccct tgattttcta cagattcgca
    10741 aataatctta atatcattat catcacaaac tttttttacc aaagaaagcc ctataccaaa
    10801 tcctccttga tcggtattaa atcttgtata tctatcaaaa atatgattta aatttgactt
    10861 tgaaattcca caacctgtat ccgcaatact taaaaaattg gctttcaaaa ttatagaaat
    10921 tactccacct tttttattgt atttaatagc attgcttata agattatcaa tcaatttaga
    10981 aatttgactt ttaggagcaa aaatatttgc ttgatttaaa tcaagcttta gtgtaatttt
    11041 tttttgctca aaaaatactt taaaatattc caatctttct tcaagtagta ttcttaaatc
    11101 aaatttttgt ttttctgttt ctaaggtatt agggaaatta taaaaaacaa gatcagaata
    11161 cacttgagac aaactttttg cagcaagctt aatccttgta aatttagcat tatctcctaa
    11221 attttgatgc tcaagttgtt ctatactcat caaaataaca cttaatgggg tattgagttc
    11281 atgagttgaa tctttaataa aacgatttag tgtgctgatt ttatcctcca aaggctttag
    11341 agcaattttt actaaaatat aagatattaa acccaatatg caaaaagcca taatagcaaa
    11401 accaaaaact ttcgttctaa tccaaaaaag atctttgcca acatcttcac cctgtattaa
    11461 aatttgcaaa ccatcgttag tatttacttc ttcattgcta gcatgtctta aaaaataatg
    11521 atctgcactc ataggggcaa ggaaaaaaac cttattatca caaatacctc tacctttaag
    11581 ctctatcttt gcctttctta aatcaaaatc tatattacta aaaacaatct ttttaacatc
    11641 aaatatagca aattttagtg ctgtgctttg agcaatattt tttgcactta tatctatagg
    11701 ggtaaaacga gaatttaaga tgcttataac aatgtttcta tgattttctc tcaaagtggc
    11761 accctttaaa acaactaatt cttcatataa tttttgatac cataatgcaa aaaaaatagt
    11821 taaaaaaata cctgtagttg ttaggtagat taataaaatt tgcctaatga cttttttagc
    11881 catagcaata tcccctgcct ctttgattta taattttttc ttttcctaaa attttacgta
    11941 aatttttcac ataagccctt aaacttagct cactaggctc ctcatcataa tcccagagtt
    12001 cttcaaaaat tctctctgta cttaaaaagt tgtttttatt tttaagtaat aaagataaaa
    12061 gcttaatttc tttactcggt aaagtcaagg ctttattatt atggtaaaga atttgtgtag
    12121 taaattcaaa tctaaatcca tctcctaaat cttcaaaatc ttcattttta tgtgaaaaag
    12181 ctcttttaag caaagcttta accctgatag ataactcggc aagttcaaaa ggttttttta
    12241 tataatcatc acaacctgcg tcaaagcctt gttttaaatc gtttgttgtg tttaaagaag
    12301 tcatgaaaat tgctggagtt tgctttccgc tttttcttaa ttctttaagt aatgaaaatc
    12361 catctcctaa aggaactttt acatctaaaa tccaaagatc aaaatatctt tcataagcca
    12421 tatctaaagc ttcttgcgca ttatcgcata aaaatacttc atatccctca tcgtttaaaa
    12481 actcttcaat gatctcactc aagctcaaat catcttctaa aagtaaaatt ttagcagcca
    12541 taatttaaat ctttctaact tcaaatctct taaatatata tcattgtatc aaaattctta
    12601 tcaattattt aataaaattt cattttcatt taatttattt ttatctataa tcctttcata
    12661 caaataaatt tttccttaag gagttaaaat gcttccaaaa tgggataaca gctatagtgt
    12721 gcacaatgct aaaattgatg agcagcataa aaagcttttt aaacttgctg caaaagttga
    12781 agttgtatca gatagatctg taagtaaaaa tgaagtcaaa gaacttttgg ctgaattttt
    12841 taattatatg aaagatcact ttaatgatga agaaaaatac atgcagctaa taggctatcc
    12901 aaatttagaa gaacatcgaa aaatacataa agaaatcatc caaaccatga ttaatttaat
    12961 caaagatatc aaatcaacca atgatcttaa agaaaaactt tatatagtgg ctaaaaagtg
    13021 gcttttagaa cacatactat atgaagacat gaaagttgaa aaatggagaa gttcttcttt
    13081 gtctacagat gatggtggcg atgttagctt tgaagcagca gaagatgaag ataatgagca
    13141 tccacaattt tatctttata cctgtaattg tcctggtaaa attcacgatg ttccttatag
    13201 cattcatcaa aaaatagaat tacaaggtca taaatttact tgtaaaactt gtaaacaagc
    13261 tataaaattt tacaaaaaat attcttaagg aggataaaat gaaacgcaat gtaaaaactt
    13321 attcttttag aatgccttta gagcttaagg agcgtttgga taatttaagt aaaaatcttt
    13381 ctaaaccaaa atcaaccata gtaaaagaag ccatagaggc ttatcttaat gaagttgaag
    13441 atttttcttt tgctgttaat gccctagaag aacttaaaga tggggattat caaaaggcaa
    13501 gtaaaaaaat agataaaatt gtcaaaaatc ttaaacaaac aaaataaaaa actttatcac
    13561 aatttttttg tgataaagac ttattaattt tttatattaa aatacattta tgaatattaa
    13621 aaatggagtt aaaaaagtgg ctccggatgt aggattcgaa cctacgacca atcggttaac
    13681 agccgactac tctaccgctg agctaatccg gaatatttaa aagtaaaatg tgattatagt
    13741 gaaattaaaa aactttgtca agggtttttt cacaaaaatg cattttttat gtaaaaaaat
    13801 taatttactc cttaacaata acacttttta aatttctaaa ataaaacaaa tttaccccat
    13861 cttcatataa ataatcaagc ttcattccat gtgtttctaa aatagtattt acaatataaa
    13921 gccctaatcc aaaacttgat ttttgttttg atccttgagt aaaagcttga gtatagtatt
    13981 ctaaagtatt gttaagctca ggaccacgat ttttaaaaca aatataatca tctataatat
    14041 caatttgcac aaacccatct tcagaatgtt taataccatt atctatcata tttttaatcg
    14101 ccgtagtaaa aagtttaaaa tccacattta caaaaaaact ttcttccata aaaatacgta
    14161 tattgctatc atctcgcatt gcaatttctt tggcttcatc taaaacatct aaaatattgt
    14221 atttttttct atttataaaa gcagcccctg aagtaatttg ctcaatagca gcaaattcat
    14281 taattaaaat ttcaagtcta gtaaaaaccc catttaagcg ctctttatat ttattatctt
    14341 ctatcatttc taaagttaag agccctttag taataggagt tttgagttca tgcataatat
    14401 ttcttaaaaa aaactgacga gattggttta actttcgaat ttgaacaata gcttgataaa
    14461 aagcttcact tacttgtgaa atttcatcca ccccagtgct tacatcttct atatcaccaa
    14521 gctttccttg ggcaaattta tcaatttgtt ttttaagtct tttaagtggt tttaattttt
    14581 taaatatata aatataaagc aatacaagaa tacaaatcac agctacagct atagctttga
    14641 taataaaata cctataggtt tgataatctt gatccttata aagataaacc tttccatcat
    14701 aaataatatt taaatacacc tgtctattat aagaaataat ctcgattaag ccattgttaa
    14761 cctcaaccct agctaaaaca tcacctctaa aaagaatttt acggatctgc tttgcttctg
    14821 ttatctcatc cattttatta taattttttg tctgctcttc aaattctttt tcactgataa
    14881 ctcctgcaaa atttaagagc cttgcattag ctatcaaaga atattttgta tttaattctc
    14941 tagtataatt ttgctgatca tattctataa gccacaaaaa gccaagtaca acactaaccc
    15001 cagcaaaaat aaaaataaaa gttatagtat aaaaaatcga agatttattc attgagtaag
    15061 cttataacct attccacgta tagagtgaat atattttgga gtttttggat catctcccat
    15121 cttttgacga attctactga taataacatc tatactttta ttactagaat cctcactaat
    15181 agaagaacaa ttataaacaa gctcttcacg acttaccact ccaccctctt ttttaatcaa
    15241 atagcttaaa atatcaaatt cagcattagt taaagtaagc tcttgtcctt tcatggtaat
    15301 aatatgctta tattgatcat aaacaagatc ttttacactt tttgctatgg cgctttttgt
    15361 atttgaaata cgtcttaaat gacttttaat acgtgcttgt aattcttttg gattataagg
    15421 ttttggtagg taatcatctg ctccaagctc taaagcatta accttatctg taatatcatg
    15481 tcttgcgctt gaaacaataa taggcgtatc atacttttta cgaatctctt cacacacttc
    15541 aagcccatca agccctggca aagaaaggtc taaaatgata agctgatatt cttttaatgc
    15601 aagcttagaa agacctatat aaggttcatg agctatatca actttcatat caaatttttc
    15661 caaatattca gctgtaattt ctgctaattc taaatcatct tctatcataa gaatatttgt
    15721 catagttttc ctttatttta aacttaattt taattttaaa ctaaaattta taacgaaagg
    15781 aaaatccttc cgttattttt atttaagcag aagcaaagtc gcaaaaccat tgcgatatac
    15841 ccaaactttg gtaaattctt ttttattaac ttgttttaaa gcttgttcta aatcttttaa
    15901 atttttaatt tcactttgtc caacacctat gataatatca ccctcttgga aaccagaatt
    15961 ttttcctttg ctcttttctt taacactatc aaccaaaaca ccattaacat cttttggaat
    16021 ttgcaaacga tccttaagtc ttggatctaa atttctcaaa ctcaaaccat caatcaaatc
    16081 gctttgtacg cctttaggat tttctttttc acctttaaga ataaaacttg cttgcttatt
    16141 ttctccatct ctttcgtaac ttaatgaaat tttttgacca atctctaaag ttcctatata
    16201 atttttaaga tcaataggac tttttataac cttatcatta actttagtaa ctaaatctcc
    16261 acgcttaagc cctgcttcat cagcacttga acctttttga acatcagtga ttaaagctcc
    16321 ttcttgattt ttgtaagctt ttttagtatc accttgcaaa gctaaaatag ttacacctaa
    16381 aaatcctcta tcaatcttgc ctttttcaat aagtttttta gctatatctt taaccatatt
    16441 tgaaggtatg gcaaaaccta tgccattatt tccaccacca cgagaaagaa tagctgaatt
    16501 aatacctact aaatatccgc gactatccac caaagctcca cctgaatttc ctggattgat
    16561 agaagcatct gtttgtataa aattttcata ttgatttaaa cctatattgt ctttatttaa
    16621 agcagatatt atcccacttg taacactaaa accaactcca aaaggatttc caagtgcaaa
    16681 aacaacatct ccttccatta aatcatcaga atttgtaaaa gtaatagctg aaagattatt
    16741 agcctctatt tttataacag ccaaatctgt ttttggatct ttacctataa gttttgcttt
    16801 atattctatg tcgcttcctg gtaaattcac tgtaatcgta tcagcatcat ctacaacgtg
    16861 attatttgtt actatataac catcttttga aataatcacc cctgatccca aagaactcac
    16921 cacttcttta tcattttttc cttttctttg agaaaaatca aaatcaaaaa attgtttaaa
    16981 ataaggatca ttaaaaaaat catccaaagg gcttggacga tttgctcttg taatagtttt
    17041 tgaggtggaa atattaacca ctgatttttt tgcatcttta atagaatcat gataagaaag
    17101 cactgcattt ccagcagcag gattcacacg attagccgtt gcagtcgatt cgttaaaatt
    17161 aatacttgca gcaaataaag cacttgctaa acttaatgat aaaaaaatct ttttcatttc
    17221 atttcctttt gttcttaaag ataaattatc tcgtaaaata ttttactgtc ttcatagtat
    17281 aaaaccgaaa atttacaaaa ttgtaaataa aaccttgagt gataaaaatt tataaaactt
    17341 gattgactta ggctaaagtt tatgttataa tttaatcctc tatataatca agtaaaaatt
    17401 tttaaggaaa tataacatga atagtttata cgaaactctt ggagttagca aaaacgctag
    17461 tgcagatgaa ataaaaaaag cttaccgtcg cctagctaga aaatatcatc ctgatatcaa
    17521 caaagaaaaa ggtgctgaag aaaaatttaa agaaattaat gctgcttatg aaattttaag
    17581 tgacgaaaaa aaacgagctc agtatgacca atacggcgat tctatgtttg gtggacaaag
    17641 ttttcatgat ttttcaagaa atactggtgg ggtaaatttg gacgatattt taaaagatct
    17701 ctttggagga ggctttggtg gacgctcaag agggggtttt aacggctttt cttcaaaagg
    17761 ctttagcagt ggttttggag gatttggagg ttttgaagaa gaaattttag acagcaatct
    17821 agagcttcac attcctttcg aaaaagctgt taaaggcggg gaacatagtt ttaattttca
    17881 aggcgaaacc attaaattta aaattccaca tggtataaaa gaaggcgaga aactaagaat
    17941 tcgctctaaa ggaaaacaaa gcagaaatgg agctagagga gatttaatca ttattgtaaa
    18001 aatagaagaa agtcctattt acacaagaga agatgatgat ttatatcaaa aggttgatat
    18061 ttctttaaaa actgcacttt ttggtggaaa aataaatata aaaacactca aagaaggcaa
    18121 ggaagaagca acaattaaca taacgcctaa ttcaaaaaat aaccaaaaaa ttcgtttaaa
    18181 aggttatggt gtgcaaaata gaaaaagtga tatttatggg gatatgtatt tgattttaaa
    18241 tgttgttttg ccaaatttag atacccttga tgaaaaattt atagaactct taaaagaaaa
    18301 attaccttaa agaaaggaat aaaatatgga acagcattat gatgaacctg tatatttaat
    18361 cagtgttgtg gctaaagttt taagcataca tccacaaacc ttaaggcaat acgaaagaga
    18421 aggattgata gagccaagta gaaccgatgg caaaataaga ctttattctc aaagagatat
    18481 tgaccgtatt aaacttatat tgcgtttaac aagagacatg ggaatcaatc ttgctggagt
    18541 agatgttatc ttaaaattga aaaaccaact tcacgaattt gaaaatttaa ttgatgaact
    18601 acgcttagaa ttaagcaaac aacaagataa agaagcggct agtaaagccg ttgttaagca
    18661 taaaaatagc tttgatttga ttttttatga gaaaaaataa aaaataatgg ataatttttt
    18721 agaaattttt ttaatcaccg ttgctatagc tatagtttta aatgtcatat ttaaaaaatt
    18781 tgaaattcca actatcattg gatatatagc tgctggagaa atcatttctg aaatttatca
    18841 tttaagtggc aaaggcgaaa tcacccatat agccgaattt ggtatagtgt ttttaatgtt
    18901 taccataggg cttgaatttt cttttaagca tttaatggca atgaaacaag aagttttttt
    18961 aaacggctct ttgcagatgc ttacttgtgg ctttgttttt atgttacttg ctataggaat
    19021 tttaggactt ggagataaaa gcgctactat agtaggcttt gcactagcgc tttcttcaac
    19081 cgcagtggtg cttaaaattt taaatgataa tggcgatatc aatgagcaat atggtagaaa
    19141 agcattggga attttgcttt ttcaagatat agccgttatt cctttgcttt tgcttgtaga
    19201 tattttttca tccaacaatc aaaacataga aaaactcctt tttaccactt taatttcagc
    19261 acttatttta atcactttat tatttttcat aggtaaatat ctagtggata gaatttttag
    19321 actcattatc cacacttctt ctcaggaaat ttttattagt actgttttat ttatggttat
    19381 tggagcaagt tttttagcaa attattttgg attttcttat tctttgggtg cttttatagc
    19441 aggtgctttg atagcagaaa caaaatataa acacaaaata gaagcggact tgatcccatt
    19501 tagagatttg cttttagggc tttttttcat aactgtaggc atgcaaattc aacttgatgt
    19561 agtggcacaa aattggtttt taatcatagt tttaaccctt cttgtaatgg ctttaaaatt
    19621 tggcatagtt tttggctttt tatttcttta caccaaaaaa agagtagcgc ttaaaacagc
    19681 ttttgccata gctcaaattg gcgaattcgc cctagcaatt ttttctcttt tacaagcaaa
    19741 aaatatgctt gatatcaaaa cttcacaaat tttaattgtt gtttctattt taaccatgat
    19801 tatcacacct tttattttaa acaatataag aaaaattacc aatgttgtag aagatatagc
    19861 acttaatacc aacgctgtgc aaaatattga cagcaatatc aagcttaaaa atcatcttgt
    19921 tgtttttggc tacggacgct taggacaaga agtcgtacaa aaaatcaaaa acacaggcgt
    19981 accttatctt gttttagaaa gtgatttaaa tttagtagaa cttggagtta gtcgaggtga
    20041 aaatgtcgtt tttgccaatg ctgctcaaga agaaacctta aaaattgcca atatagaaga
    20101 atgtgccgta gctattatca cagttacaaa tgaagctaaa cttgaaattt tatgtcaagt
    20161 gctagctaat tatccaaaac ctatagacac catcattcat gtaaatggaa ctttaaaaaa
    20221 gatgcttttt tctagcatag atgaaaatat acgcatcatt cgctctgaaa aagtaatcgc
    20281 tagaaattta gttcaagaag cgctagaatg ccgcattcac aaaaatacct aaggaagaat
    20341 tttgacaaaa aatgaagaaa aagccttacg cgtaaaatac ctaagaaatc ttgaaaaatt
    20401 tttcaatggc gctatatctg cacttaaaaa agaagatttt gataaaacta aatttgaaga
    20461 aagaatgtta aaaaatgcta aattttttga aaaaaatccc gcggtaaatc ttaactcaac
    20521 ctatgcaaaa aatcttgaat tttttgtcaa tgcttgttta gatttttcca aagaaaaaaa
    20581 cgagctttta aatcttgcca atgctttaga taagcaaaaa aaacaaggtg ggaaaaaaga
    20641 aaaacataaa aattatttaa aggattatga atgattaatg tattttttga tatggatgga
    20701 actttaatcg atagtgcaaa tgccatttct tgtgcagtca atgaaataag acaggattta
    20761 aatctagccc cactttcaag agaaatcatt atgcaaacca tcaatactcc caatattgac
    20821 tgggcaaaag aactttataa tatagaaaat ttccatcatt ctaattttaa agaaggctat
    20881 gaaaaatatt ttgtcaagca ctatgaacaa agcgtggtgc tttttgaagg agtaaaagaa
    20941 cttttagaat ttttaaaaag caaaaattgt tttttagcta ttgctactaa cgccccacaa
    21001 agctcacttt caaacatact taaaaaacac gatatcattc cttattttga taaaatttta
    21061 ggcgtaagtt taggcataga acccaaacct catcctatga tgctagagct tttaaaaagc
    21121 gaggctccat ataaaacaag cgtttttata ggagatagtc aaaaagataa agaatgtgct
    21181 aaaaatgcta atttgcctta ttttcatgcc aaatggtatc aaaaaaattt aaaagaaaat
    21241 gaatttagca actctagtga acttaaagac tttttgcaaa agtatttata agttttttaa
    21301 tgaaatttta gttaaaatta gaaataaatt ttaaaaagag taaattatga gtgaattatt
    21361 aatagaaatt ggtacagaag aattacctgc tattcctttg ctaaaagaat tagctaatat
    21421 agaaaaaaaa tggaacaatg ttttagaaga ataccgcttg gtaagtgatt ttaaatttta
    21481 ttatactccg cgtcgtttag ttttttttca tgaaaatttt gcagacaaac aagaagatag
    21541 ctttgctgaa tttataggag cacctaaaaa tgttgcttat aaagatggag ttttaactcc
    21601 tgcgggacaa agcttcctgc aaaaagcaag gatcagtgaa aatgaactct cttttaaaga
    21661 aatcaaaggc aaggaagttt tgtaccatca aaaagctatt aaaggtttgc aaagtcaaga
    21721 aattttagga gaaatggtag aaaaatttct aaaaagtctt agttttggca aaagtatgcg
    21781 ctggggtgca aattcttttg aattcatccg tgcgatccgt tctatagctt gcattttaaa
    21841 tgatgaactt gttaattttc aaagctatgg agtaaaaagt actaaaaaaa ctttcattca
    21901 cagaagcgta agttatgatt tgcaagattt taacaatgca aaagaatatt ttgaactact
    21961 aaaaaaaaac tatatcatcc ttgatccaat caaaagaaag gaaaaaatac ttgagcaatt
    22021 taaactcata gaaagtcaaa aaaatataca aattggagaa gatgaagagc ttttagctga
    22081 agtagttgct atcacagaat atcctaatgc acttttagga agttttgaag aagaattttt
    22141 agaaattcct agcgaagtaa tcatcacttc aatgagagaa aatcaacgtt attttgcagt
    22201 ttttaacgat aaaggcttaa gtaatcattt tatagtagta agtaatgcag tatgtaagga
    22261 ttattcaaaa atcatacatg gaaatgaaag agttttgcgt gcaagactta gcgatgcaat
    22321 gtttttttat caaaatgatt tacaaaatgg cttaaaacct gaaaaacttg ccaaaatgac
    22381 ctatcttgaa ggtttaggca caatgcaaga taaaagttta agagagatta aaattgctga
    22441 aattttatgt caaatgctcc ataatgataa aatcgaaaat atcagcacag cactaaaata
    22501 cgccaaagca gacttagcca cacaaatggt ttatgaattt actgatttgc aaggcattat
    22561 gggaagttat tatgcgcaaa aaatgggctt agattatcaa atttgcttag ccatcaaaga
    22621 acaatatctt cctaattccg aacaagctcc acttccaagt acagaatttt caagcatagt
    22681 agcccttgca aacaagcttg atacccttat aggacttttt agcataggaa aaattccaag
    22741 cggaacaaag gatccttatg ccttaagaag agctgccaat gggatcatta aaattgcttt
    22801 aaatttaaat aaagaatttg atatccaaat tttattagaa aaactttcaa atcattataa
    22861 aagctttgat atacaaattt taaaaaattt tatttttgaa agactttata ctttttatac
    22921 agtcaatgct tcttttgtaa aagcggtttt aagctcacaa aatacagatc ttatccatat
    22981 caatcaaagc gtaaatgctc ttataaaact tagcaaaaaa gataatttta atgaaaattt
    23041 tgcaaccttt aaaagactag ccaatatcgc cactaaaaat cctcataaag ttgatgaaag
    23101 tctttttgtt caagaagcag aaagtaaact ttacaaagct tttcaagaaa aaactaaagc
    23161 caactcttta caagaaaaac ttgaaaatct ttttgcactt aagcctttta ttgatgagtt
    23221 ttttaatcaa gtgatgatta atgctgaaga tgaaaaactt aaaaataatc gccaagcttt
    23281 ggtttatgaa atttatgcgg agtttttaaa aatcgccgat cttaaagagt taagcctatg
    23341 aaagccttat ggcttttttt aagccttact ctttggcttt ttggagctca aaatttagaa
    23401 ctcatcaaag gtcaagcttt atttttggag ctagataaga aagatttttt atctttaaaa
    23461 aataatggta aaaatattcc cacttttaca catcctaaaa atcaagaaaa agttctagct
    23521 attttttcct taccttacaa aaatcccccg caaaatacaa aacttatcgc attttataaa
    23581 gataaaaaag aagaaatttt cataaaaact ttagaaggta attataaaag tgaaaaattg
    23641 caagttgaaa acaaaaagat ttttccacca aaaaccatac aagaacgcat cactaaagaa
    23701 ttaaaagaag ccaatgcgat ttatagttct tatactccaa aagctttatt taacggtgct
    23761 tttaatatac ctttaaattc ttttatcaca agtgattttg gcaaagcaag aacttttaat
    23821 gaaaaagtag caagttatca tagcggaacg gactttagag ctgccacagg aacacctatt
    23881 tatgcagcca actcaggcat agtaaaaatt gcaaaagatc gttatttcgc aggaaattca
    23941 gtagtcattg atcatggttt tggaatttat tcacaatatt atcatctttc taaaatcgat
    24001 gttaaagtag gacaaaagat aaaaaaaggc gaacttatag gacttagcgg agctagtggt
    24061 agggtaagtg ggccgcattt gcattttgga attttagctg gaggcaaaca agttgatcct
    24121 ttggattttg tatccaaatt taatgctatt tttcaatgaa atttagtgac tttttccatg
    24181 cttggctcca tgaaagctat tataaaaatg ctgtaagtat aggaaaaaac ggagattttt
    24241 ttactgctgt aagcgtagga aatctttttg gcacactttt agccaagcat tttttaaatt
    24301 taatagataa aaaaatttta caactccctt tagaacttgt agaaataggc gctaatgaag
    24361 gatatttaag tcgtgatttt ttatccgctt tgcttgaatt aagacctgaa attttttctc
    24421 aaatttcttt tttcgtcata gaaccgcatg aaaaattaag aactttacaa aaaaagactt
    24481 tagaaggagt ggaatttact cacaaaaata gtcttaaaga atgccatttt aagaacgctt
    24541 ttttcttttg caatgaactt tttgatagtt ttgcttgcga acttatagat catgataaaa
    24601 tggcatttgt agaaaatttt aaacttattt ttaaaaatat ggatgaaaat ttaatcacaa
    24661 aatgcaaagc tttaaatctt aaaaaaggtg aactcagttt agagcttgaa aattttttta
    24721 aagatttaaa ccaaacttgt gagagattta tatttgcggg atttgactat ggaaccttaa
    24781 atccacaaag ttttagctta agaatctatc aaaagcacga agtttttagc ccttttgaag
    24841 tatctttaaa agattttttc ggcaaaagcg atctaactta taatgtcaat tttactcatc
    24901 ttcaaaaact catcaaagaa tatgatttta aacctttagc ttttaaaaaa caaagtcttg
    24961 ctttcatgga ttttggtttt gaagatttat tagaatacgc aaaaaataaa aacattaaaa
    25021 cttacgaaag ttttttatct caagctaaaa ttttattttt taattttgat gaaaaatttc
    25081 at
//
LOCUS       DARBBO010000015        24376 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.015, whole genome shotgun sequence.
ACCESSION   DARBBO010000015 DARBBO010000000
VERSION     DARBBO010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24376
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.015"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..616
                     /locus_tag="SB854_000455"
     CDS             <1..616
                     /locus_tag="SB854_000455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HEG0956495.1"
                     /translation="AKNVKIFKNIKANLEIKNNKIYAKPKEKLIIFASTHKDEEELLL
                     DYFKLEENEKLIIAPRHPERFKEVENLLLNKGLEFEKFSSLKDENKKFSKKILLLDAL
                     GELVNFYAISDVVVLGGSFIEGIGGHNPIEAAYFDNVLISGKFIHNQKVLFEEVENVY
                     FCEKLKDLNDKIHYLNLKAKISKKENLDLIIQTIQKGIDARKSL"
     gene            597..1349
                     /locus_tag="SB854_000456"
     CDS             597..1349
                     /locus_tag="SB854_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEG0956496.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKAKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKVKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLAKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFNYHFRANLDSGFAKFGFDIKNLDF"
     gene            1417..2754
                     /gene="ffh"
                     /locus_tag="SB854_000457"
     CDS             1417..2754
                     /gene="ffh"
                     /locus_tag="SB854_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEG0956497.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKINLENILSVNGKNQGFVFTSKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMDELRAVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLSGMANVVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            2819..3046
                     /gene="rpsP"
                     /locus_tag="SB854_000458"
     CDS             2819..3046
                     /gene="rpsP"
                     /locus_tag="SB854_000458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEG0956498.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            3049..3291
                     /locus_tag="SB854_000459"
     CDS             3049..3291
                     /locus_tag="SB854_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEG0956499.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            3284..3823
                     /gene="rimM"
                     /locus_tag="SB854_000460"
     CDS             3284..3823
                     /gene="rimM"
                     /locus_tag="SB854_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA processing protein RimM"
                     /protein_id="HEG0956500.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNANNSTVLFENYEDIEKAKELTNLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVVDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNID
                     IEKRQIFCTQDAFLILENS"
     gene            3820..4524
                     /gene="trmD"
                     /locus_tag="SB854_000461"
     CDS             3820..4524
                     /gene="trmD"
                     /locus_tag="SB854_000461"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEG0956501.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEVFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLEEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            4535..4891
                     /gene="rplS"
                     /locus_tag="SB854_000462"
     CDS             4535..4891
                     /gene="rplS"
                     /locus_tag="SB854_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEG0956502.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKIGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
     gene            5024..5437
                     /gene="uraH"
                     /locus_tag="SB854_000463"
     CDS             5024..5437
                     /gene="uraH"
                     /locus_tag="SB854_000463"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HEG0956503.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
     gene            5461..6801
                     /locus_tag="SB854_000464"
     CDS             5461..6801
                     /locus_tag="SB854_000464"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-7-phosphoheptulonate synthase class II"
                     /protein_id="HEG0956504.1"
                     /translation="MWAKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVIK
                     IGRIAGQFAKPRSSDFEELDGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAI
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLSGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKTRK"
     gene            6798..7127
                     /locus_tag="SB854_000465"
     CDS             6798..7127
                     /locus_tag="SB854_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC family transcriptional regulator"
                     /protein_id="HEG0956505.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(7140..7346)
                     /locus_tag="SB854_000466"
                     /pseudo
     CDS             complement(7140..7346)
                     /locus_tag="SB854_000466"
                     /inference="COORDINATES: protein motif:HMM:TIGR02174.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SelT/SelW/SelH family protein"
     gene            7575..11177
                     /gene="dnaE"
                     /locus_tag="SB854_000467"
     CDS             7575..11177
                     /gene="dnaE"
                     /locus_tag="SB854_000467"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEG0956506.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGIEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDYSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLELNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDMVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGLEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            complement(11189..11821)
                     /locus_tag="SB854_000468"
     CDS             complement(11189..11821)
                     /locus_tag="SB854_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEG0956507.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKENIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(11856..12605)
                     /gene="flaC"
                     /locus_tag="SB854_000469"
     CDS             complement(11856..12605)
                     /gene="flaC"
                     /locus_tag="SB854_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HEG0956508.1"
                     /translation="MMISDATMMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINDSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATDGLSID
                     SQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            complement(12643..13113)
                     /locus_tag="SB854_000470"
     CDS             complement(12643..13113)
                     /locus_tag="SB854_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HEG0956509.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFQS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFQIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENATKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            complement(13126..13941)
                     /locus_tag="SB854_000471"
     CDS             complement(13126..13941)
                     /locus_tag="SB854_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEG0956510.1"
                     /translation="MTIKNALMEAKSSLKDYENEAVFILCEYLKKDKAWLFLNQDIKI
                     DHEPYFELIRRFKSGEPFEYIFEKVDFWGLEFKIKKGVLIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELGLKITACDINPKALELALENAKLHKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQGYNRAFVAKFTNMRYDKK"
     gene            complement(13938..15125)
                     /locus_tag="SB854_000472"
     CDS             complement(13938..15125)
                     /locus_tag="SB854_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG0956511.1"
                     /translation="MTLIAILCLYTALLSWISYAQICFLEREKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINIAWIGFGFLYLKELLILNNTRFENTLFLLSFLIITS
                     ILNLPLSIYESFIKDKAHGFSNMTVKLFIKDTVKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMKKLDDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFAHKDII
                     KALFNGAITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFILANIFSFLISPMLNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYTFFYLSHPSISDRIK
                     ALS"
     gene            15252..15437
                     /locus_tag="SB854_000473"
     CDS             15252..15437
                     /locus_tag="SB854_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HEG0956512.1"
                     /translation="MFFKKKISQKQKEKPKIPINDVILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLVRANKF"
     gene            complement(15434..15976)
                     /gene="mog"
                     /locus_tag="SB854_000474"
     CDS             complement(15434..15976)
                     /gene="mog"
                     /locus_tag="SB854_000474"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HEG0956513.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(15997..16980)
                     /gene="corA"
                     /locus_tag="SB854_000475"
     CDS             complement(15997..16980)
                     /gene="corA"
                     /locus_tag="SB854_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HEG0956514.1"
                     /translation="MLYIYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSVAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            17097..18143
                     /locus_tag="SB854_000476"
     CDS             17097..18143
                     /locus_tag="SB854_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEG0956515.1"
                     /translation="MSKKFFLSLGLVALLFSNSQAIDENLIKAAQAEGRVNSLAMPDT
                     WANWKDTWADLKNLYGIEHSDTDMSSAQEIAKFKAEKKNASGDIGDVGASFGEIAVKQ
                     GVAQPFKTSYWDQIPTWAKDKDGNWLLAYTGTIAFIVNKDVVKDIPKTWQDLLKGNYK
                     ITVGDVSVAAQAVSAVLAANYALGGDEKDLSPALAFFNTLAKQGRLVNNDVSIANLEK
                     GEVEVGLVWDFNGLGYRDKVGKDRYEVLIPADGSVISGYTTIINKYAKHPNAAKLARE
                     FILSDKGQINLAKGYARPIRIDHIILPDDIKAKLLPSEQYKNARAIKDQKAWEKSAKE
                     LPQLWQEKVIVDMK"
     gene            18154..19479
                     /locus_tag="SB854_000477"
     CDS             18154..19479
                     /locus_tag="SB854_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase-like activity of phytase family
                     protein"
                     /protein_id="HEG0956516.1"
                     /translation="MKKVILTSAMLCSVLFGVQEYEANLAGHIIIDSKSTVKPPKDAP
                     DFFKTYGKFANIAREEKIGTFKSKGNRETDFYLPFKNQPIQGHSGIKYIPKKDVFWVI
                     SDNGLGKKYNSYDAMLYAHEFKFDFKNSKYELLKTVFFKDSDKKYPYPITTETTKERY
                     LSGANFDTESIQVINDEFYIGDEFGPYLLHFDKNGNLKEVFDVYVEGKKLISPDNPSL
                     KFSDKPDGENEKFNIKRSKGFEAMASSKDGSKLYLLLEGSIYNNNAYENEKGKEYLRI
                     IEFDVKNKKFTGKTYKYFLEDKNHSIGDFNMIDDKYGIIIERDQKEGTKDKACKEGED
                     TKHCFNNVAQFKRIYKVKLDDKTHEAQKISYIDLLNIKDRNKISKKPLVNDKFVFPFE
                     TIEGVDIVDDSHIVIENDNNFPYSSSREPNKTDDNEFILLEVKDFLKSK"
     gene            19476..20285
                     /locus_tag="SB854_000478"
     CDS             19476..20285
                     /locus_tag="SB854_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEG0956517.1"
                     /translation="MMSKVILVVLDGLNCKSTSINMGYLNALCKENLGKFYSLECELP
                     SMSRPLYECLLTGVKPVLSGIINNKSSFSKQISIFDLCKEQGLKAGGAAYHWVFELYN
                     KKEFIPSLHRHIEDENLTLPYGHFYYEDDYLDSHLFADGEHLRNKYNLDFTLIHSMNI
                     DDAGHKFGSHSIEYANKTKKVDNLISEYLPTWLEQGINVIITSDHGMTEGKSHGGLSE
                     DEILVPFFTFGSAFSYENAKIKQDEICGSVCEILGLKHDKRYNDEILKAKK"
     gene            20282..21121
                     /locus_tag="SB854_000479"
     CDS             20282..21121
                     /locus_tag="SB854_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0956518.1"
                     /translation="MKEKFLAFLSILPFFIVFTFFMIAPLIWIVFNAFYVEEDEIYSL
                     ANFIHIFESKFYLQSIINSLQISFISSIFGLLIGLLASYSLFILAPSKICNFLFSLNT
                     MISNFSGVPLAFAFIIVLGSNGVVNVFLKNLGIEPFVSVYANFGVNIVYVYFQIPLAI
                     LLLLPAFKSFENSHLNACKMLGGGNFLYWLKIALPLLAPALFGVFVILFANAFGAYAT
                     IYALSSGNFNVAPVRIAALIAGDINLDPYMASALSIIITIIMLVVTFIANFLSKKYNF
                     KVL"
     gene            21122..21901
                     /locus_tag="SB854_000480"
     CDS             21122..21901
                     /locus_tag="SB854_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0956519.1"
                     /translation="MNENLSLKAKIYHYAVLFLVFLFLALPLMATFLYSISTSWGVSV
                     LPDDLTLKWYQELFHDERFLLALWHSLLVCVGSILLSVILVFPLVFVLNYYFLKLKAS
                     VNILIIMPFAVPPIVSCVGLLQLYADNIGGTAWILIFTYFTIALPFIYRALDNAMSNV
                     NLNELIASNAMLGGSLMGAIFKLVLPNLRNGILVAVFLSFSFLIGEFLYANILVGSAY
                     ETLQVYLYNIKNQSGHYSSALVIVYFVLIFITTFIASLIKE"
     gene            21905..22894
                     /locus_tag="SB854_000481"
     CDS             21905..22894
                     /locus_tag="SB854_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0956520.1"
                     /translation="MAYLKIKNFKKAYGDKIIFEDINFSAKKGEFITLLGPSGCGKST
                     LLRCIAGLSQINGGKISLNDKDLTKLSPQKRNIGMVFQNYALFPNLNVFENVAFGLKI
                     KKMDKKDIEKRVKKMLKLVELEEYAKTYPHKLSGGQMQRVALARSLVTKPDLLLLDEP
                     LSALDAKIRKHLRVQIKEIQKELELTTIFVTHDQEEALELSDRIILMNEGKIIQNSNA
                     NNLYLLPESHFVASFIGNYNILSPKELDSLGLKHDFKKDIALRPETIEISNEGLEAKI
                     KEKSLLGNIIRYRVRVQEIEFKVDTLNFSTHSTYEAGDKIALKFNLSLAKELK"
     gene            22891..23529
                     /locus_tag="SB854_000482"
     CDS             22891..23529
                     /locus_tag="SB854_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEG0956521.1"
                     /translation="MKLVLFDLDDTLIQGDSAKLWLKFCVEKGFLPQEYLEKIVFYQK
                     QYQEKKLDMDEFMTFFLQSVKGKNEDRISSLVDEFIKIYIKPYEKAKELIIKYQDQRC
                     IIISATAEFLVRKIASFLGVRESIAIKCERVGDKFSGKAYGIYSFKEGKVLRLKEYLG
                     KDYEKWMKDSYFFSDSINDLPLLESVSKAFVCNGDEKILKIAKERKYEILTF"
     gene            complement(23553..24308)
                     /locus_tag="SB854_000483"
     CDS             complement(23553..24308)
                     /locus_tag="SB854_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG0956522.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNFKQDSKLTGFDTDLIEEIAKKNGIEIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKNNDSLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNNKIDAIVADQDTAKGFLAENPELVSFYQETDGGEGFSFAFDK
                     NKQKDIIEIFNKGIDEAKTDGFYNTLIKKYELE"
BASE COUNT         8550 a         3136 c         4210 g         8480 t
ORIGIN      
        1 agctaaaaat gttaaaattt ttaaaaatat taaggcaaat ttagaaatta aaaataataa
       61 aatttatgcc aaacctaagg aaaaacttat catttttgcc agtactcata aggacgaaga
      121 agagcttttg cttgattatt ttaaactaga agaaaatgaa aaactcatta tcgccccacg
      181 acaccctgaa cgttttaaag aagttgaaaa tttgctttta aacaaaggtt tagaatttga
      241 aaaatttagt tctttaaaag atgaaaataa gaaattttct aaaaaaattt tgcttttaga
      301 tgctttaggg gagcttgtaa atttttatgc aatttctgat gttgttgtgc ttggaggttc
      361 tttcatagaa ggcataggag gacacaatcc tatagaagcg gcatattttg ataatgtatt
      421 aatcagcggg aaatttattc acaatcaaaa ggttttgttt gaagaagtgg aaaatgtata
      481 tttttgtgaa aaattaaaag atttaaatga taaaattcat tatttaaatt taaaagctaa
      541 aatttccaaa aaagaaaatt tagatcttat catacaaact atacaaaagg gaattgatgc
      601 aagaaaaagc ttataaactc ttagctttgc aagaaaaaat ttcaaatcgt gaagctaaag
      661 atttgattga taagggttgt gttttttcac atggaaaaaa agttgtggtt gctagagctt
      721 tgatgagcga taaggcaaga tttaatgtga taaaagctaa aaatcctcaa attatttttg
      781 aagatgataa gattattgct attaataaac cttatgctta tgtgagtgaa gatttagaga
      841 aaaaatttaa tgccaagctt ttaaatcgtt tagacaaaga aacaagtggt gtgattttgc
      901 tttgtaaaga tgaagatttt agaaagcttt gtatagaaga atttaaaaaa cacagggttt
      961 ataaaagtta tattgcggtt ttagatgggg ttttggctga agaggttgaa gtgaatgaac
     1021 ctatttttac tataaaagta aaaggcgggg cgttaagtaa agtttcaaaa gatggtttaa
     1081 gtgctttaag tatcattact cctatcatga tgcagtcaaa aaaaacctta gcaaaaatag
     1141 ttattcaaac aggtagaact catcaaatca gagtgcatgc taaatttata aaacatggcg
     1201 ttgtaggtga tgaaaaatat gctaaaattt caagcgatag aatgtatttg catagctatg
     1261 aaattaaaat ttttaattat cattttaggg ctaatttaga tagtggtttt gcaaaatttg
     1321 gctttgatat aaaaaattta gatttttaaa gccatttaag aaaaaatttt gtataatgca
     1381 aggtctaatt taaaaatttt atagaaaggt gataaagtgt ttgagttagt cagcgaatct
     1441 tttaaatcag cgattaataa attacgtttt gttgatgatg aaaaagcact taagaacgct
     1501 ttagaaacct taaaaaaagc tcttttaaaa gcagatgttc atcataaggt aactaaagag
     1561 cttttgactt taatagaaga agatgtaaaa caaaatggca taggtcaaaa acaattttta
     1621 aatgccatta aaataaattt agaaaatatt ttaagtgtca atggtaagaa tcaaggtttt
     1681 gtttttactt ctaaaccccc aacagtagtt ctaatggcag gtttgcaagg aggcggtaag
     1741 actacaagca ctatcaaact cgcaaattat ttaaaattac gcaataaaaa agttttagtt
     1801 gcagcttgtg atttgcagcg tttagcagca gtggagcaac taagacaact ttgtgaagct
     1861 aatgaaattg aacttttctt catagaaaat gaaaaagatc ctattagggt tgctaaagag
     1921 gctttaaaaa aggctgaaag ttctatggtg gatgttttgc ttgtggatac tgctggacgt
     1981 ttggctatag atgaagcttt gatggatgag ttaagagcag ttaaggatgt cttaaatcct
     2041 gatgagattt tttatgttgc tgatgcaatg agtggtcaag atggggttaa gactgctgct
     2101 agttttaatg aagttttagg tatcagtggg gtaattttat caaaatttga tgcagatact
     2161 aaaggtggag tagccttagg tatagcaaaa caaatcggta ttcctttaag atttattggt
     2221 gtgggtgaaa aagtagcaga tttagaagtt tttataccag atcgtatagt aagtcgtatt
     2281 atgggtgagg gtgatttggc aactttagct gaaaaaactg ctgcgattat tgatgaaaaa
     2341 gaggctaaaa aactcaatca aaaaattaaa aaaggtgaat ttaattttaa tgattttctt
     2401 aatcaaatgg aaagtattaa aaaattagga agtatgaagt ctttaatcgg tatgatacca
     2461 ggacttagcg gaatggcaaa tgtggtaaaa gatatagatt tggataattc taaagaaatc
     2521 atacgcatta aagcaatgat ttcttcaatg actccaaaag aaagagaaaa tcctgattta
     2581 ttaaataatg ctagaaagcg tcgtatagca gagggagcag gtctttctca ggtagaagtc
     2641 aatcgttttt taaaacaatt tagcaatgca gcaaaacttg caaaaagatt ttcaggtaaa
     2701 aaaggaatgg aaagtttaac acagatgatg agtcaagcta gaaggcaatt ttaaatttta
     2761 tttataaata ctttttatag tatctataaa taaaattttt aatttttaag gagtataaat
     2821 gacagttatt agacttacaa gaatgggtag aaccaaaaga ccattttatc gtattgtagt
     2881 tacagacagt agaaaacgtc gtgatggtgg ttggatagaa agtattgggt attataatcc
     2941 tatggtagaa cctgaggtaa ttaaagttga tgcagagcgt ttagcttatt ggaaaagtgt
     3001 tggtgcaaaa cttagcgata aagttgcttc tatcactagc aaataatcat ggtagagaat
     3061 tttcttagag aatacgcaaa attaattgca gattatcctg aacagattga tactcaaaaa
     3121 attgaattaa gtgaaaattt ttttgagatt gttctttttg cacataaggt tgatacaggt
     3181 aagcttatag gtaaaaatgg aaaaatgatc aatgctataa aaaccgtaat ctctgcttat
     3241 aagagcaagg atgcaagttc ttatagagta acggtaaaag cacttgagtg aaaaagattt
     3301 tgttcaagtt gcaaaacttg gtaaaactgt gggtcttaag ggttatgtaa aattgcataa
     3361 cctgagcgac ttttcttctc aatttaaaaa agatgctact ttttttataa aaaacaccaa
     3421 agaaatgtta aagattaagc attataatgc aaacaattct actgttttat ttgaaaatta
     3481 tgaagatata gaaaaggcca aagaattaac taatcttatt ctttttcaga gtatcgagaa
     3541 aagcagacaa acttgtaaat taaaaaaaga tgagtttttt tattttgata ttttagagtg
     3601 tgaagttttt gaagaagata aaagattagg taaagtggtt gatatcttgg aaactggagc
     3661 ttcttattta tttgaaattc aaagtgatga aaaatgggtt gaaaaaaaat atcctaaaat
     3721 attttttatt ccatatttgg ataaatttgt taaaaatata gatatagaaa aacgacagat
     3781 tttttgcacg caagatgctt ttttaatttt agaaaattca tgaaatttag tttcgtttct
     3841 ttgttcccta atcttatgga attttacttt caagattcta tacttgcaag agcaaaagaa
     3901 aaaaaacttt tcaaacttaa tttttataat ccaagagatt tttctaaaaa ttcttatcat
     3961 aaagtcgatg attataaaat aggtggtgga gctggacttt tgatgcaagc tgaacctatg
     4021 tatgaggtgc taagaagtat tcaagaaaaa aaagaaaatc cctattttat ttttttaaat
     4081 ccaagtggta aaacctttaa tcaaaaagac gccaaacgct taagtaaaaa agaacatata
     4141 gtttttgtat gtgggcgcta tgaaggtata gatgaaagag tgcttgaaat ttttgcgaat
     4201 gaagttttta gtatagggga ttttatttta actggaggag aattacctgc gcttgtaatg
     4261 tgtgatgcaa ttttaagaaa tgttaacggg gttttaggaa atatggaaag tttggaagaa
     4321 gaaagctttg aaaataattt actcgaagcg cctgcttttt caaaaccttt tatttttgag
     4381 aaaaaaaata aaaaatttta tactccttca gagtttttaa agggtaatca cgctagaatt
     4441 gcaagtttaa aaactacttt ggcgtcttgc aaaacgaaat tttttcgtcc agatttattt
     4501 ttagagcatg aacgcaaaaa ataagggatt ttttatgaaa aataaatata tagaacaatt
     4561 tgaagcaaaa caaattgaag gtaaaaatgt tccagatttt cgtgctggtg atactttaaa
     4621 gcttgcaatt cgcatcaaag aaggagataa aacaagaatc caaaattttg agggtatttg
     4681 tattgctaga agaggtaatg gcgtaagtga aacttttatc gtgcgtaaaa ttggcgctaa
     4741 taatgttggc gttgagagaa tttttcctat ttatagtgaa agtttagaaa gtattactgt
     4801 tttgcgtcgt ggtcgtgtac gccgtgcaag attattctac ttaagagata gacgcggtaa
     4861 agcagcgcgt attaaagagc ttaaaaaata atttataatt atttttatta taagtctaac
     4921 aattaaataa ttataattaa tttataatta ttatttattt gattttaatt attaataata
     4981 ctcttgtata atattccttg taaatattat acaaggagag aaaatgtttt ctattaaaaa
     5041 aactttatta atactagcaa gcgtgccaat gtttttgagt gctactgaat atcaattaag
     5101 tactcatgtc ttggatatta cttctggaca acctgctcct aaagtaaaag ttgagcttta
     5161 taagttggaa gcaaatcaac agtggaaaaa agtaagtgaa gaatttaccg aagaaaatgg
     5221 tagaatagga gatttattac catatgaaaa agctgaaaat agggcttttg gaatttataa
     5281 gcttaaattt tttacaaaag actattacac atcacacaaa ataaatactt tttatccttt
     5341 tgtagaggta agttttgagc tttctaaaga tcagaaacat tatcatgttc caataaccct
     5401 ttctcctttt ggttattcaa cttatagagg aagctgataa ataaaacgaa agaaaaaacc
     5461 atgtgggcta agaattcttg gaaaaactat cctataaaac agcaacctat ctatccagat
     5521 caagaggaaa tgaatagagt tttagcaaga cttgagaaac ttcctccttt ggtttttgct
     5581 ggagaagtga gaaatcttca aaagtcttta gcaagagttt gtaaaaaaga agctttttta
     5641 cttcaaggtg gagattgcgc tgaaagtttt gaaaattttg gcgctgtaaa tatccgtgat
     5701 atgtttaaaa ttttacttca aatggctata gtacttacat ttgctggtgg atgtcctgtt
     5761 ataaaaattg gtcgtattgc agggcagttt gccaagccaa gaagtagtga ttttgaagag
     5821 ttagatggta taagtcttcc tagttatcgt ggtgatatta ttaatggttt tgaatttagt
     5881 gaacaagcac gcattcctga tccacataga atgcttgaag cttattatca aagcgcaata
     5941 acgctaaatt tgttgcgtgg atttgctaag ggtggtttag cagatttaca tgaagtacat
     6001 cgttggaatt tgggcttttt aaaaaagagt gaactccata agcaatatac tgatatcagt
     6061 gaaaaaattt cacaagcttt agcttttatg gaagcttgtg gaattaatac aagtaatact
     6121 ccaagtctaa gagaagttag tgtttatact tcacatgaag ctttactttt gccttatgaa
     6181 gaagctttaa ctagagtgga tagtttaagt ggagaaattt acgattgttc agctcacatg
     6241 ctttggatag gtgaaagaac aagggcgctt gatgaagctc atgtgcattt tttaagtgga
     6301 gtaaaaaatc ctttaggggt taaaatagga cctagtgcaa gtgctgatga tatcatagct
     6361 ttagcaaatg ttttaaatcc aaacaatgaa gaaggaagat taaatattat tatccgcatg
     6421 ggtgcagata aaattatcaa taatttgcca aaaattttct ctaaacttaa aagtgaaggt
     6481 ttaaatttag tatatagcat agatcctatg catggaaata cggtaaaagc aggcaatttt
     6541 aaaacacgtg agtttgataa aattatgcaa gaagtgagat ctttttttga gattgcaata
     6601 agcgaagggg tttatccagg tggagtgcat cttgaaatga ctgggaaaga tgtaacagaa
     6661 tgcacaggtg gtgcaagcaa tgttactgct caaagcttgg aagatcgtta tgagactcaa
     6721 tgcgatccaa gacttaatgc ggatcaagca ttagaacttg cttttttaat cgcagatttg
     6781 gtaaaaaaga ctagaaaatg aaactttatg gtattaaaaa ttgcaattct gtaaagaaag
     6841 ctatggatgc tttaacacaa aaaggtattg tgtttgattt tatggatatt aaaaagatta
     6901 atcaagatat tttatacaca tggttaaaac aaaaatcttt tgaagaactt atcaatactg
     6961 ctggattaac ttctaaaaaa cttggcttaa acaaagaaaa agttaaaaat ttaaatgaaa
     7021 aagaacttga aaaaattgta ttggaaaatc caagttgtat taagcgtcct attatcgagt
     7081 atgagcaaaa tatatatatt ggtaaggaat atgagaaaat gttatgatag agtgtttgat
     7141 tacactctat tttttattaa ttgattaatt tcattttgat atggaaatct ttcactttcg
     7201 caattaataa gttgtgtttt agagaagata acttttccgt ctacttcaac gataaaatca
     7261 cctctgccgc caatttcaaa ttctacttca acatctttga aatcgctttg tagttcttct
     7321 gcaacccttg cagcttgtgg gcgataattt caaagattgc aataagcaat ttttactttc
     7381 atcatttcat cctttgagaa gttcttttta ttaagattaa aatcttagat tttattatag
     7441 tttattttgg ctgaattttt gcctttttgt aaaatttaag ttgaaattta gggtcaattt
     7501 ctttcaaatt cagcgagaaa aatttataat ttttatcaaa attaaaataa gccttaaaaa
     7561 actaaaggaa gaaaatgagt caatttacac acttgcattt acatacagaa tattctttgc
     7621 ttgatggagc caataagctt aaagaattag ctttgacttt aaaagagcag ggtgctacaa
     7681 gtgtggctat gacagatcat ggaaatatgt ttggggcaat tgatttttat caaacaatga
     7741 aagcacaagg tttaaaacct atcattggta tagaagcgta tttgcataat catgatgagt
     7801 tagatgataa aagttctcgt cagcgttttc acctttgttt gtatgcaaaa aatgagattg
     7861 gatatcaaaa tttaatgtat ttaagttctc aaagttatat taaaggtttg tattattatc
     7921 cgcgtatcaa taaaaagctt ttggaagatt atagcgaagg tcttatttgc tcttctgctt
     7981 gcttgcaagg tgaagtaaat tggcacttaa atacttatag tgaaagaaat gtgcgttttg
     8041 gtgcaaaagg ctatgaagca gcaaaagaag cggcattatg gtataaaaaa gtttttaaag
     8101 atgattttta ttttgaaatc atgcgtcatg gtataggcga tcaaagaatg atagatgatg
     8161 atattatcag actttctaaa gaattaaata taaaaatcat tgctacaaat gatacgcatt
     8221 atacttttaa agaaagagcg gctgcccatg aggtttttat gtgtatagcc atgggaaaaa
     8281 aacttaacga tcctgataga atgcgtcata gtgtgcatga attttatgtt aaaagtcctg
     8341 agcagatgag tgagcttttt gcagatattc cagaagctat agaaaataca caagaaatcg
     8401 cacaaaaatg taatttagag cttaatcttg gcaatcccac tccaccgaat tttaaattta
     8461 caagagaata tgctaaagat cataatatta tcttacctga agaaacaaaa gaatttagct
     8521 ttgataatga tgacatggtt tttgaagaac tttgcaaaaa gggacttgaa gagagattaa
     8581 aatttatcga tgaaagtaag catgaagaat acaaacaaag acttgaagta gaaattaaca
     8641 tcattaaaaa tatgaaattt tcaggttata tgcttattgt tcatgatttt attaaagtgg
     8701 ctaaggataa aggtattcca gtaggccctg gaagaggatc agctgcagga agtttggttt
     8761 cttattgttt aaggattacg gatttagatc ctattcctta tagtctactt tttgagcgtt
     8821 ttttaaatcc tgagcgtgtg agcatgcctg atattgatgt ggatttttgt caagacagac
     8881 gtgctgaagt gattgattat gtgattgata aatatggagc ggataaggtt gcacaggtga
     8941 ttacctttgg taaacttttg gctaaagggg tgattcgtga tgtggctaga gtttgtgata
     9001 tgagtattca agatgctgat gagcttgcta aacttgtgcc tgaagagctt aaaatcactc
     9061 ttgatgctgc ttatgaaaaa gaacctaaaa tcaaagaatt tatcgatcgt catcctaaag
     9121 gtcttgaagt ttgggagtat gcaagagctt tagaaggatt aaatcgcaat gcgggtatgc
     9181 acgcagcagg tgttgtaatt tctaatgaaa gtttatggaa gaaaactccg ctttttagac
     9241 aaagtaaaaa tgatgaaaga catttggtaa cgcagtattc taaagatcat ttagaagatg
     9301 tggatttgat aaaatttgac tttttaggtc ttaaaacctt aacagtaatc aataatgcga
     9361 tcaagcttat taaaaagcgt tacaataaag acattatttg ggaaactata gatgtaaatg
     9421 atagcaaagt ttataaaacc atacaaagtg gaaatacttt gggaattttt caaatcgaat
     9481 caggcggtat gcaaagttta aatgcacgct taaaaccaga gcgttttgaa gatatcattg
     9541 cggttcttgc gctttatcgt ccaggcccta tggaatcagg aatgcttgat gattttatcg
     9601 acagaaagca tggtttaaaa agtatagaat atccttttga cagtttagaa aaggttttag
     9661 aacctactta tggggttatt gtttatcaag aacaggttat gcaaattgtt caaattatag
     9721 gtggcttttc tttaggaggt gctgatgtag tgcgtcgtgc tatgggtaaa aaagatcctg
     9781 agaagatgaa aaagcttaaa actgattttg cagatggagc agaaaaacaa ggatatgata
     9841 gagcaaaagc tgaggattta tgggagctta tcgtaaaatt tgcaggatat ggttttaata
     9901 aatctcactc tgcggcttat gcgttgatta cttttcaaac agcttattta aaaacttatt
     9961 atcctagtga atttatggca gcacttttaa caagcgaaga aaacaatgtg gataaaattg
    10021 ctgtttatat tgatgagatg aaaaaaatga atattaaact tttacctcca tcgattaaca
    10081 aagcgatccg tgaatttagt gctttagagc aagatggcaa ggatgctatt atatacggac
    10141 ttggggctat aaaaagtgtg ggtattcctg cagttgaaaa tttacttgaa gcaagacaag
    10201 atggagaatt taaggatatt aatgatttct taggtaagat agatcccacc aaaataaacc
    10261 gtagaacatt agaaagtctt attaaggcag gggcttttga tgagtttggt tttactagaa
    10321 aagctttgtt tgataatatg gaaaatctta gcgaagcatc gcgtaaaatg gctgaagtaa
    10381 gaaaaaatgc tgcaagttct ctttttggtg aagaggaatt aacttcaggt gttcaagtaa
    10441 attttactcc caaaaatgaa gaatttgaag tgatggaaaa attaggatat gaaaaagaaa
    10501 ttttaggaat ttatgtttca ggccatcctt tagatcgatt ttatgaacaa attaatgcca
    10561 tagattatgt taaaagttta gattttgaaa gtttaaaaaa caatggagaa attttaagta
    10621 taggtaaaat tgaagatttc aaatccatga tgagtaaaaa taataagcgt tatggtagaa
    10681 ttgaaatttt ggattattat tcttcgtttg atgctactgt atttgaaagc aatgtagaag
    10741 aaatagaaaa catcatcaaa gatgaaaatt taaaaaataa tgcctatggt tttgtattgg
    10801 gatttaaagc tgaaggaggg gagaagccta gctttttttt aaaagcaatt aaagatttgc
    10861 aaagtcttga agatggcgag attaaagcta taaaaaaatt tggagcaaaa aaagatttta
    10921 aaaataaaga agaaaatcat tttaccgcag aacctaagga atttgaaaaa aatatcatag
    10981 agctagattt gacaagattg aatagagaat taatctatga aattcatgaa attgctagaa
    11041 atgcacataa tcctaatgaa aaaaataata aaaaacttgt tttaaaagtt attagtgcgg
    11101 gatcttgctt gctttatcat acagatttta ttatctctga tagtatagta gaggaaattt
    11161 ctaataaata tgcttaagta agattgtttt acttaagatt tttaaataaa atgcttccga
    11221 gtcttaccaa gttggatccg cattttatag caatttcaaa atcattactc atccccatag
    11281 agcaaatctt agccccatgt ttttgaagaa tttcataaat tttaaatgta gtttcaaagc
    11341 tttttataat attttcttta tcttggctgt gtgatcctat gctcattacg ccacaaagat
    11401 ttaaattaga gcattcttct tgtatttgta aatattcttc tacggcttga tttggatcta
    11461 gaccgctttt gctattttca tttgcactat tgatttctaa taaagtattt aatttataat
    11521 caagtctttt gtccatagct ttagctattt taataccatt gcaagagtgc cataatatag
    11581 gtttttgttt gattaagaga ttgattttgt tgctttgtag cgttcctata aaatgccact
    11641 ttatgtctag ttttttttca tcaagatttt cttttttttg tgctagagct tggacttgat
    11701 tttctccaaa ttctactata ccttgatcaa aaagcttttc aattatactt gcatcgacat
    11761 acttgcttgc ggctacaaga cgaacgtttt tggttttttc taaaatttgc tctaaagtca
    11821 ttttgataaa aaataagccc tatttagggc ttattttatt gtaataaatt agcaattttg
    11881 ctttgaagct gcatgttgga ttgcgcagca acaaaagcag cagcattttc ttttagataa
    11941 ttggcattaa aatcattgac attttttgcc atgtcattat ttagtaaatt attttcagct
    12001 gcttttgagt tgatgctatt ttgaacactt gcattaatat ttgatgtgat ggcattgata
    12061 cctgagccta tttcacttct taaacttcca agttgatcca taaaatttgt aatactatct
    12121 tgactatcta tgcttaatcc atctgttgct aatggattta aatttgtagt ttcagttccg
    12181 ctacctacta caaaattcat agtttgaaag acattttttc cattataagt tgcattatta
    12241 aaagaatcat tgatggattc ttgtatgcgt gttgcttctg ttcttagcat tcctttttga
    12301 gaatcattaa gtgcagcatt gttcattttt actgaaagtt cattaagtct atctgcgctt
    12361 tgagagatat tggtaaggct agcatctgca atttgtaaaa cccctatagc atcataagca
    12421 tttgcgacac cttgatctat agtgcttgat tgagatctta aagaatcagc aatagctaaa
    12481 ttagcactat caactccact tattgcgcga acagctgcaa tattttctaa agctttatcg
    12541 ctagcttttt gtgcattatt taaataataa ttttgttgca tcatagttgc atcagagatc
    12601 atcatggcct actccttctc ttttggattt atttatattt tatcattttt ttgctatttt
    12661 aaagcttaag aaatataaaa aaacttgcat tatcaagatg attttaatca ccacttcact
    12721 tgcattatgg atactgataa attcttgagt ttttgtagcg ttttcgccta agttttggag
    12781 ttcaattatg gtattagtaa aataaaaaac aaatattaag cttaaaatca aaataagcaa
    12841 actcagcata aattttgaaa attttatttg aaatttcatt tcatctttta taagagaata
    12901 aatttcatat aaaaaattaa ccactgaaac aaaaatcagt aaatatccca ttttaataaa
    12961 aatttgcgtc atcattaagc cactttgaaa atggctcaac actccttctc ctataagatt
    13021 ttgaggaaaa aaaattgttg gtgcaacaac tattcctagt atgagttcaa cccctatgat
    13081 ggaggcaagt aaaaataaat taacagcttt caagagtttc tccttttatt ttttatcata
    13141 acgcatattt gtaaatttag ctacaaaagc acgattataa ccttgttcat ctttgaaaaa
    13201 atcaacaatg aaattatttt gatataaaat tttttccaaa atttcttttt gatcatagcc
    13261 aaattcgcaa gctaaaaatt taactttttt atcaagggaa aaatgtatga tttcttctag
    13321 aatttcatat cctttttctc cgccaaataa agcctctttg ggttcttttt gcacccaaat
    13381 atctatagga tatgaatttt taatataggg cggatttgaa aaaataaaat cataattttc
    13441 tttaatttgc ttaaaattac aaagtttaaa gtcaatcaag tgatcgactt tgtgtaattt
    13501 ggcattctct aaagctaatt ctaaggcttt gggattgata tcacaggctg tgatttttaa
    13561 cccaagttct ttggctaaaa caatgcttaa aattccgctt ccaaatccta tttctaaaat
    13621 tccattaaaa gtattttttt tgcataaatt taaaatttga aaaagtaaaa tttcactatc
    13681 gtagcgaggg attagaacgc ctttttttat cttaaattct aagccccaaa aatccacttt
    13741 ttcaaatata tattcaaaag gttctccaga tttaaaacgc cttataagct caaaataagg
    13801 ttcatgatct atttttatat cttggtttaa aaatagccaa gctttatctt tttttagata
    13861 ttcgcaaagt ataaatactg cttcattttc ataatctttt aagctagatt tagcttccat
    13921 aagagcattt tttatagtca agaaagagcc ttgattctat cactaatact tggatggctg
    13981 agataaaaaa atgtatatat tttacttgtt ttgataaaag ctttattttc tcttgctaga
    14041 gctatcaatg catttttcat atcttctttg cttgtaactt tagctccgtg ttgatcagct
    14101 gcaaattcat tttttctact taaggcatta agcataggag aaattaaaaa gctaaaaata
    14161 tttgccaaga taaataaaag agcaaacacg ccaccattta ctccttctag atgactttct
    14221 aagtaaacaa attcaggtaa atttgcaaaa acaaaaaaaa gtaaaaacat agttatagcg
    14281 ccgttaaata aagctttgat aatatcctta tgagcaaaat gtccaagctc atgtcctaaa
    14341 acagctaaaa gttctctttc atttaaggct tttaataatg tatcaaaaag caccactctt
    14401 ttgcttttaa aaagtccacc aaaataagca tttaaacgct tatctctttt gcttgcatca
    14461 ataacataaa ccccatttgc actaaaccca cattgtttca tcaaagagct gatttttttc
    14521 agcaaatttt catcgtctag ttttttcatt ttattaaaaa taggtgctat taaggtaggg
    14581 tagatgagat ttataatcac tataatacaa aaggcaaaaa taaaggccgc aatccaccaa
    14641 aaagttccaa aaaaatcata gcaaaaaagc aaagcataaa ggattaaaaa tccaaatatt
    14701 aaagttaaaa taagactttt tacagtgtct ttgataaaaa gttttacagt catatttgaa
    14761 aaaccatggg ctttatcttt gataaaactt tcataaatac ttaaaggtag atttaaaata
    14821 cttgtgatta ttaaaaaaga taataaaaat aaagtatttt caaaacgagt gttgtttaag
    14881 ataagcaatt ctttaagata taaaaatcca aaacctatcc atgcaatatt gatgattaaa
    14941 ttataaaaat tggaaaatag tttaaatttt tcattttcga tggcaatatc tgctgcattt
    15001 tgatagtctt tttcgcttaa aatttgagct tgtttgtctt tttctctttc taagaaacaa
    15061 atttgagcat aggaaatcca agataaaagt gctgtgtaaa gacataaaat tgcaattaaa
    15121 gtcattattt ttccttgatt ggttttttgc gaattctagc ttaaaataat gaaataaagt
    15181 taatagttta aaatctaaaa taatattctt ttcaactaag ttggtgtata tttataaaaa
    15241 aggattaaag aatgtttttt aagaaaaaga tttcacaaaa gcaaaaagaa aagcctaaaa
    15301 ttccaatcaa tgatgtgatt ttagatgaca ggctttgtaa gtttaaaaat aaagtgcaaa
    15361 agataagtaa agatgaggct tcagcaagtc tgcttgctag acaattaagc agacttgtta
    15421 gggctaataa attttaattt tgacattttt tcttagggcg aaaaacctta ataacttcat
    15481 catttgcttc tatataagca ccttctatca aatcgataca gtaaggtata gccggaaaaa
    15541 caggctctag gcattctttt atagccttag gatttcctgg taaattaatg ataaaagatt
    15601 tattgcgaat tcctgcactc tgtcttgaaa gtatagctgt tgggacatat tttaaacttt
    15661 ctaagcgcat aagttctcca aaacctggca tcattttatc acacacggct tccgtggctt
    15721 ctggggttac atcacgaagt gctggacctg tacctccgct tgtaacaatc aaatcgcatt
    15781 ttttttcatc tgctagataa agtaattttt taatgatcaa atcataatca tcagggatta
    15841 attctttatg ataaataata tcatttttta tatatgaatt taacactctt tcaatttcag
    15901 cagtggcttt atcttcgtat ataccactac ttgctctatc gcttagggtt aaaattccta
    15961 tgtttattgt atccattgtt tctccttaat aaatttttat aaccatcctt ttttcttgaa
    16021 aacaactaaa ggtaagatga tagaaattac catcacgcca agcactatgg gataagcata
    16081 gtgaagttca agttcgggca tgaatttaaa attcatacca taaacagttc ctattaaagt
    16141 aggtggcatc atggcaacag ttgcaacggt gaaaatttta atgattttat tttgttctat
    16201 gttgatttgg ctggctaaaa tggtttggat attatctaag atattaagtt gcgaaacact
    16261 aaattcaacc aaagaattta agtcttttaa aactatagtg agattttgtt ttatatcttt
    16321 atcgatttta tcgcttttta gcaaagaagt catagcgcga cgcttatcaa ataaagaatc
    16381 tcttacgcgc atattaagct cttgtaaact tgaaatatcc tttagcattt catcataact
    16441 atattcatct tttttttcta aaacacttgt tcttaagcgt cttgcttctt tatctatcca
    16501 ttctagtaaa tccgcatctt tttcaacgcg cacttcaaac attttatcaa taatatcaaa
    16561 accatcttca aaattcttcg gactagctaa aatccttgct tgaatttctt caaaagtgct
    16621 aaattcgtta tatcttatag taaataagat atttttagcg gtagcaaaag taacaatttc
    16681 tgtgcgaagc ttgattaaat tcctatcctc ttcatcgctt ttaagatctc ttactaaaaa
    16741 atgagcattg atggttattg tcgcattatc ttcccaatat tttgcgctaa gctctatttc
    16801 ttccctttct tcttttgtag gaaactcaag attaaattca cttgatataa aagcaatttc
    16861 tgctacactt ggatgaagta aatcaatcca taaaatattt tgcggtagtt cttgactatc
    16921 gagattaaaa ttgattcttt gaactaaagc attttgagtt ttgatataaa tataaagcat
    16981 gatcgctcct tgtttatgac tttaaaatta taaccttgtt tgcttaaaaa ttaacttgtt
    17041 tctaaaatgt ttctaaaact cattaaattt ccaaaatatt ttttgaaagg aaaaaaatga
    17101 gtaagaaatt tttcttaagt ttaggtcttg ttgctttatt gttttcaaat tcacaagcta
    17161 ttgatgagaa tttgattaaa gctgcgcaag cagaaggtag ggtaaattct ttagctatgc
    17221 ctgatacttg ggcaaattgg aaggatactt gggcagatct taaaaatctt tatggcatag
    17281 aacatagcga tacagatatg agttcagctc aagaaattgc taaatttaaa gccgaaaaga
    17341 aaaatgcaag cggtgatata ggggatgtag gggcttcttt tggagagata gcggttaaac
    17401 aaggagtagc tcagcctttt aagacaagtt actgggatca aattccaact tgggctaaag
    17461 ataaagatgg aaattggctt ttagcttata caggaaccat agcttttata gtcaataaag
    17521 atgtagtaaa agatatacct aaaacttggc aagatttgct taagggaaat tataaaatta
    17581 ccgtaggtga tgtaagtgta gcggctcaag ctgtgagtgc agttttggca gctaattatg
    17641 ccttaggtgg ggatgaaaaa gatttaagtc ctgctttagc tttttttaat actttagcca
    17701 aacaaggaag acttgtaaat aatgatgtaa gtatagccaa tcttgaaaaa ggtgaagttg
    17761 aagtgggttt agtttgggat tttaatggtt taggctatag agataaagtg ggcaaagatc
    17821 gttatgaagt tttaatccct gctgatggta gtgttatttc gggttataca actattatca
    17881 ataaatacgc aaaacatcca aatgcagcta aattagcccg tgagtttata ctttctgata
    17941 aaggacaaat caatctagca aaaggttatg caaggccaat aagaattgat catattatct
    18001 tgccagatga tataaaagcc aaacttttac caagtgagca atacaaaaat gcaagagcaa
    18061 tcaaagatca aaaagcttgg gaaaaaagcg ctaaagaatt accacaactt tggcaagaaa
    18121 aagttatagt ggatatgaaa taaaggagat tggatgaaaa aggttatttt aacaagtgct
    18181 atgctttgca gtgttttatt tggagttcaa gagtatgagg ccaatttagc agggcatatt
    18241 atcatagatt ctaaaagtac agtaaaacct cctaaggatg ctcctgattt ttttaaaact
    18301 tatgggaaat ttgcaaatat cgctagagaa gaaaaaattg gaacttttaa atctaaggga
    18361 aacagggaaa cagattttta tttacctttt aaaaatcaac ctatacaagg acatagtggg
    18421 ataaaatata ttccaaaaaa agatgttttt tgggtaatta gcgataatgg cttgggtaaa
    18481 aagtataatt cttatgatgc catgctttat gctcacgagt ttaaatttga ttttaaaaac
    18541 tcaaaatacg aacttttaaa aacagttttt tttaaagata gtgataaaaa atatccctat
    18601 cctatcacca ccgaaacaac caaagaaagg tatttaagcg gggctaattt tgatactgag
    18661 agtatacagg ttatcaatga tgaattttat ataggtgatg aatttggtcc ttatttgctt
    18721 cattttgata agaatgggaa tttaaaagaa gtttttgatg tgtatgtgga gggtaaaaaa
    18781 cttatttctc ctgataatcc aagtttaaaa tttagcgata agcctgatgg agaaaatgag
    18841 aaatttaata tcaagcgttc taaaggcttt gaagctatgg caagctctaa agatggttct
    18901 aaactttatt tgcttttaga aggaagcatt tataataaca acgcttatga gaatgaaaaa
    18961 ggtaaagaat atctaagaat catagaattt gatgtaaaaa ataaaaaatt caccggaaaa
    19021 acttataaat atttcttaga agataaaaac cattccatag gtgattttaa tatgatagat
    19081 gataaatacg gcatcatcat agaaagagat caaaaagaag gcactaaaga taaggcttgc
    19141 aaagaaggtg aagatactaa gcattgtttt aataatgtag ctcaatttaa aagaatttat
    19201 aaggttaaat tagatgataa aactcatgaa gctcaaaaaa tttcttatat agatctttta
    19261 aatattaagg atagaaataa aatttctaaa aagcctttgg taaatgataa atttgttttt
    19321 ccttttgaaa ccatagaagg tgtggatata gtagatgact ctcatatagt tatagaaaat
    19381 gacaataact ttccttattc ttcaagtaga gaacctaata agactgatga taatgagttt
    19441 attttgcttg aagtaaaaga ttttttaaag agtaaatgat gtccaaagtt attttagttg
    19501 tgcttgatgg cttaaattgt aaaagcacta gtataaatat gggatattta aatgcacttt
    19561 gcaaagagaa tttaggcaaa ttttattctt tagaatgcga acttcctagt atgtctcgtc
    19621 ctttatacga gtgcttatta acaggcgtaa agcctgtttt aagtgggata attaataata
    19681 aatcgagttt ttcaaaacaa ataagcattt ttgacctttg caaagaacaa ggcttaaaag
    19741 ctggaggcgc agcttatcat tgggtttttg agctttataa taaaaaagaa tttattcctt
    19801 ctttacatcg ccatatagaa gatgaaaatt taactttacc ttatggacat ttttattatg
    19861 aagatgatta tttagattct catttatttg cagatggaga gcatttaaga aacaaatata
    19921 atctagattt tactcttata cactctatga atatagatga tgcaggacat aaatttggct
    19981 cacactctat cgagtatgct aataaaacca aaaaagttga taatttgatt tctgagtatt
    20041 tgcctacttg gttagaacaa ggtattaatg taatcatcac aagcgatcat ggtatgacag
    20101 agggtaaaag tcatggaggc ttaagcgaag atgaaatttt agtgcctttt ttcacttttg
    20161 gtagtgcttt ttcgtatgaa aatgccaaga taaaacagga tgaaatttgt ggcagtgtct
    20221 gtgaaatttt aggacttaaa cacgataaga gatataatga tgaaatttta aaggccaaaa
    20281 aatgaaagaa aaatttctag cctttttaag tattttacct ttttttatag tttttacttt
    20341 ttttatgata gcacctttga tttggattgt ttttaatgct ttttatgtag aagaggatga
    20401 aatttattct ttagccaatt ttatacatat ttttgagtcc aaattctatc tacaaagcat
    20461 tataaattct ttacaaatca gttttatttc tagtattttt ggacttttaa tagggctttt
    20521 ggcgagctat tctttattta ttttagctcc atcaaaaata tgtaattttc tcttttcttt
    20581 aaatactatg ataagtaatt tttcaggagt tcctttagct tttgctttca ttatagttct
    20641 tggaagcaat ggtgtagtta atgtgttttt gaagaattta ggcatagagc cttttgttag
    20701 tgtttatgct aatttcgggg taaatattgt ttatgtgtat tttcaaattc ctttggcgat
    20761 cttgcttttg cttccagctt ttaaaagttt tgaaaattca catttaaatg cttgtaaaat
    20821 gttaggtgga ggcaattttt tatattggtt aaaaatagct ttgcctttgc tcgctcctgc
    20881 tttgtttggt gtttttgtga ttttatttgc caatgctttt ggagcttatg cgactattta
    20941 tgctttaagt tcgggaaatt ttaatgtcgc tcctgtaaga atcgctgctt taatcgcagg
    21001 cgatatcaat cttgatcctt atatggctag tgctttaagt atcattataa ctattatcat
    21061 gcttgttgtt acctttatag ccaatttcct ttctaaaaaa tataatttta aggtgcttta
    21121 aatgaatgaa aatttgagtt taaaagctaa aatttatcat tatgcagttt tgtttttggt
    21181 ttttttgttt ttagctttgc ctttaatggc tactttttta tattctattt ccacttcttg
    21241 gggtgtaagt gttttgcctg atgatcttac gcttaaatgg tatcaagaac tttttcatga
    21301 cgaaagattt ttacttgctc tttggcattc tttgcttgtt tgtgtgggta gtattttact
    21361 ttctgtgatt cttgtttttc ctttggtttt tgtgctaaat tattattttt taaaattaaa
    21421 agcctctgta aatatactta ttatcatgcc ttttgctgta cctcctatag ttagctgtgt
    21481 ggggcttttg caactttatg ctgacaatat aggaggcaca gcttggatac tcatttttac
    21541 ttattttact atagctttgc cttttatata tagggcttta gataatgcta tgtctaatgt
    21601 caatttaaat gaactcatcg catctaatgc tatgcttgga ggttctttaa tgggagcgat
    21661 ttttaagctt gtcttgccta atttaagaaa tggaattttg gtggcagttt ttttaagttt
    21721 ttctttttta ataggcgaat ttttatacgc aaatattctt gtaggaagtg cttatgagac
    21781 tttacaagtt tatctttata atatcaaaaa tcaaagtggg cattattcta gtgctttggt
    21841 aatagtttat tttgtattaa tttttataac aacttttata gctagtttga ttaaggagtg
    21901 aaaaatggct tatttaaaga ttaaaaattt taaaaaagct tatggggata aaattatttt
    21961 tgaagatatt aattttagtg ctaaaaaggg tgagtttata acccttttag gcccaagtgg
    22021 ctgtggaaaa tccactcttt taaggtgtat agcagggctt agccaaatta atggaggaaa
    22081 aatttcttta aacgataaag atcttaccaa attaagtcct caaaaaagaa atataggtat
    22141 ggtttttcaa aattacgctc tttttccaaa tcttaacgtt tttgaaaatg tagcttttgg
    22201 tttaaagatc aaaaaaatgg ataaaaagga catagaaaaa agagtgaaaa aaatgttaaa
    22261 actcgtcgag cttgaagaat acgctaaaac ttatccacat aagctttcag gcggacaaat
    22321 gcaaagagtg gctttagcaa gatctttggt gactaaacct gatttacttt tacttgatga
    22381 gcctttatcg gcacttgatg ctaaaattcg taagcattta agggtgcaaa ttaaagaaat
    22441 tcaaaaagaa cttgaactca ccactatttt tgtaacgcac gatcaagaag aagctttaga
    22501 gttatccgat aggattattt taatgaatga gggtaaaatc atacaaaatt ccaacgcaaa
    22561 caatctttat cttttgccag aatctcattt tgtggctagc tttataggaa attacaatat
    22621 tttaagccct aaagagcttg atagcttggg tttaaaacac gattttaaaa aagatatagc
    22681 cttgcgtcct gaaaccatag aaatttctaa cgaaggctta gaggctaaga tcaaagaaaa
    22741 atcattgcta ggtaatatca tacgctatag ggttagagtg caagaaattg aatttaaggt
    22801 agatacttta aattttagca ctcatagtac ttatgaagca ggtgataaaa tcgctttaaa
    22861 attcaatctt tctttagcaa aagagttaaa atgaagcttg ttttatttga tttagatgat
    22921 actttaatac aaggcgatag tgctaagctt tggcttaaat tttgtgttga aaaaggtttt
    22981 ttacctcaag aatatttaga aaaaatcgtt ttttatcaaa aacaatatca agaaaaaaag
    23041 cttgatatgg atgaatttat gacttttttt cttcaaagtg ttaagggtaa aaatgaagat
    23101 agaatttcat ctttagtaga tgaatttata aaaatttata taaaacctta tgaaaaagct
    23161 aaagaactta taatcaaata tcaagatcaa aggtgtatta taatttcagc tacggctgaa
    23221 tttttagtta gaaaaatcgc ctcttttttg ggagtgagag aaagcatagc cataaaatgc
    23281 gagcgtgtgg gtgataaatt tagtggaaaa gcttatggga tttatagctt taaggaaggc
    23341 aaggttttaa gacttaagga atatttgggt aaagattatg aaaaatggat gaaagattct
    23401 tattttttta gtgattctat caatgattta cctttactag agtctgttag caaagccttt
    23461 gtatgtaatg gcgatgaaaa aattttaaaa attgcaaaag agagaaaata tgaaatttta
    23521 actttttaag ctataagcgt gaaaattcac gcttattcta attcatattt tttaattaaa
    23581 gtattataaa atccatcagt ttttgcttca tctatgcctt tgttaaatat ttcaataata
    23641 tctttttgtt tatttttatc aaaagcaaaa ctaaagcctt ctcctccatc tgtttcttgg
    23701 tagaaactta ccaattctgg attttcagct aaaaaacctt tagcagtatc ttgatcagct
    23761 acaatagcat caattttgtt gttttttagt gctaaaacag ctatgtttaa atctttattg
    23821 ctttgtactt gtgcattttt gatagctttt gcagtatttt cttgtaaagt tcctaattga
    23881 actcctattt ttttaccttc taaatcattt tttgtttgaa gagagtcgtt gttttttagc
    23941 ttaagataaa gatttttact catatagtaa ggtttggtaa aatcaacact ttgtcttctt
    24001 tcatcagttg cactcatagc tgaggcaatc atatcgattt tgccagcttt taaagcagga
    24061 atcaatccat cgaaattggt ttcaacccaa acaatttcaa taccattttt tttagcaatt
    24121 tcttcaatca aatcagtatc aaaacccgta agtttagaat cttgcttaaa attaaaaggt
    24181 ttataatttg gagcagttcc aacctttaat tctacacttg catttgattc tttattttta
    24241 gaatcactac aagcacctaa aaataaacca actaaagcaa ctagagcaat gcttaatatt
    24301 tttttcattt ttttcctttg atataaaatg ttttaaaatt atacttattt taaatttata
    24361 tttaattaag tctgga
//
LOCUS       DARBBO010000016        23395 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.016, whole genome shotgun sequence.
ACCESSION   DARBBO010000016 DARBBO010000000
VERSION     DARBBO010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 23395)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23395)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23395
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.016"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            186..320
                     /gene="rpmH"
                     /locus_tag="SB854_000484"
     CDS             186..320
                     /gene="rpmH"
                     /locus_tag="SB854_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEG0956523.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            317..643
                     /gene="rnpA"
                     /locus_tag="SB854_000485"
     CDS             317..643
                     /gene="rnpA"
                     /locus_tag="SB854_000485"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEG0956524.1"
                     /translation="MKNFDKFSTNEEFSSVYKIGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLRDGKYIFVAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            640..981
                     /gene="yidD"
                     /locus_tag="SB854_000486"
     CDS             640..981
                     /gene="yidD"
                     /locus_tag="SB854_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEG0956525.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRVLRCNPFFKGGFDYPRVSKNFYPINLCFKPIFLAKKQLCFLYIPYKNKSFY
                     LIKIIFKRTNQ"
     gene            978..2570
                     /gene="yidC"
                     /locus_tag="SB854_000487"
     CDS             978..2570
                     /gene="yidC"
                     /locus_tag="SB854_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEG0956526.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVVYDYFFIPKQPLKIEQNIT
                     QQNQQNTSINNTPNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DKKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANQNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKQAEHEK"
     gene            2567..3385
                     /locus_tag="SB854_000488"
     CDS             2567..3385
                     /locus_tag="SB854_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002776870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HEG0956527.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIETKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQNVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAKFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            3378..4706
                     /gene="mnmE"
                     /locus_tag="SB854_000489"
     CDS             3378..4706
                     /gene="mnmE"
                     /locus_tag="SB854_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEG0956528.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEESFKLGTHLLRIIDTAGIRESK
                     DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYLNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLELFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            4717..6903
                     /gene="purL"
                     /locus_tag="SB854_000490"
     CDS             4717..6903
                     /gene="purL"
                     /locus_tag="SB854_000490"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEG0956529.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGNIHNEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPIRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVIGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPISEPKYLSEIKDYKFE
                     LKLSIQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASAIRIKENGASVA
                     MAIECNSRLNYVNPKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFGGSMVMKIQDKKVSGSLKELDYKAEIALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGANLTSGFDDEKMIFDESASRAIVGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDSIELSKAELDKLYFESFKEQIQ"
     gene            6900..7670
                     /locus_tag="SB854_000491"
     CDS             6900..7670
                     /locus_tag="SB854_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family molecular chaperone"
                     /protein_id="HEG0956530.1"
                     /translation="MTLVLIILVVLVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSSKKELSLDEAFTILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            7673..9205
                     /gene="purH"
                     /locus_tag="SB854_000492"
     CDS             7673..9205
                     /gene="purH"
                     /locus_tag="SB854_000492"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEG0956531.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLGFEILSTGGTFKFLKENGIKV
                     MEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSNENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQID
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDAKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESSFLIRSFDKYDFKHIDGGFVYQNSDEVGEDEFKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKVAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            9304..9765
                     /locus_tag="SB854_000493"
     CDS             9304..9765
                     /locus_tag="SB854_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014517250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956532.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     NTVSTSVFQTMRMAMNLGDPEKIKEAIEDVKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENINGVVYLRLIRPLIADESCVTCHEMLIQEV"
     gene            10222..10755
                     /locus_tag="SB854_000494"
     CDS             10222..10755
                     /locus_tag="SB854_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG0956533.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSIVSQNENELAKKV
                     ENMVNQAGNIQKATQMMDKIADKTKLPSLNADIEVARAGAFGLGFSVIAEDDRQLAQN
                     SEEFLGNVVQITKELLQSINEVNAELKKNTQSIQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENI"
     gene            10771..10890
                     /locus_tag="SB854_000495"
     CDS             10771..10890
                     /locus_tag="SB854_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002908971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCP-domain signal transduction protein"
                     /protein_id="HEG0956534.1"
                     /translation="MQENVEVSEKNEEISKILLQVVDELKIVCHNLESELNQF"
     gene            10906..11340
                     /locus_tag="SB854_000496"
     CDS             10906..11340
                     /locus_tag="SB854_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HEG0956535.1"
                     /translation="MKKTLQIALAATFFAGCASTSVTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGIFKISNENGKLVLSNDEMKIFFK"
     gene            11439..12416
                     /locus_tag="SB854_000497"
     CDS             11439..12416
                     /locus_tag="SB854_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase family protein"
                     /protein_id="HEG0956536.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKAVS
                     EFQKVLLIAPKQSDFENFKDIKNVEYFKCDTNDTWIRDFGAIDIIENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEDVMLTSSHCLLNEN
                     RNSHLNKTQIDIKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLVELPIPNPLYYEGRRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPSHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            12413..13300
                     /locus_tag="SB854_000498"
     CDS             12413..13300
                     /locus_tag="SB854_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEG0956537.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICILI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            13297..14169
                     /locus_tag="SB854_000499"
     CDS             13297..14169
                     /locus_tag="SB854_000499"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HEG0956538.1"
                     /translation="MKIALIQQKFHSNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLITSLFEKRSAGLYHNIAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGIEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFADLTKRFID"
     gene            complement(14181..15527)
                     /locus_tag="SB854_000500"
     CDS             complement(14181..15527)
                     /locus_tag="SB854_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HEG0956539.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENKHYAKLEY
                     EQNVSILPQFAYDINFDAKRYKKYFFNPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNTGSPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSNNRAKIYENLN
                     FITPLKEKFAIYSEDGKFFFESRIGAIYPYYKEDKNYFYGKIGSKKYKISKKDVSKFP
                     LQFNDKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPRNSAAQKNSFN
                     HFDISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIHNIWGLRKDTT
                     QRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKSYLENIQNK"
     gene            15576..16919
                     /gene="pif1"
                     /locus_tag="SB854_000501"
     CDS             15576..16919
                     /gene="pif1"
                     /locus_tag="SB854_000501"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HEG0956540.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGHCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSANVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYVFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     DDYTLLCGINKKVNNINQEKLSKLDTPLVCFKAQVKKEDKRIKDEELDSWIRSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILASVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLEIQEQII"
     gene            16929..17663
                     /locus_tag="SB854_000502"
     CDS             16929..17663
                     /locus_tag="SB854_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956541.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGTNVLKKVEISL
                     EFDGNNLKENENKLIDAVNTVISGFFYEDIFTEIGKNNFKKTLEKFLDKKYKIELDDI
                     YIISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPKTQVPSVEKIPTPS
                     VPNLEVKQVEQLFKDPDEENKNDNGEINIDNLNTPKMTPDIEEKIKRDLIANPPQIFK
                     ENNASKPYHLPQTGYDIKLDENSTQN"
     gene            complement(17660..18169)
                     /gene="lolA"
                     /locus_tag="SB854_000503"
     CDS             complement(17660..18169)
                     /gene="lolA"
                     /locus_tag="SB854_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein chaperone LolA"
                     /protein_id="HEG0956542.1"
                     /translation="MKKTFLIFFIFIGQLFALDLNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLAAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDIFKAK
                     IPQNYDIVR"
     gene            18270..20858
                     /gene="secA"
                     /locus_tag="SB854_000504"
     CDS             18270..20858
                     /gene="secA"
                     /locus_tag="SB854_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEG0956543.1"
                     /translation="MFLNTLKAVFGTKNDREVKKYFKRVAQINALEGNYQNLSDDELK
                     AEFAKFKEQILSGEKNENDVLNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVVLS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKAEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDIRAKISQNIAEYSANVMNDYMLDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMLRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEAQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            20855..22060
                     /locus_tag="SB854_000505"
     CDS             20855..22060
                     /locus_tag="SB854_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0956544.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLAFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYLSTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALTDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGIPKNPN
                     YDGIHVYSNNAFKDVEKIKSYLKDDYVVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGASKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPVDVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            22083..22868
                     /locus_tag="SB854_000506"
     CDS             22083..22868
                     /locus_tag="SB854_000506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG0956545.1"
                     /translation="MSLFTQKNKNFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELVRGTPLLVQVLLIYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK"
     gene            22930..23005
                     /locus_tag="SB854_000507"
     tRNA            22930..23005
                     /locus_tag="SB854_000507"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:22963..22965,aa:Lys,seq:ttt)
     gene            23013..23088
                     /locus_tag="SB854_000508"
     tRNA            23013..23088
                     /locus_tag="SB854_000508"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23046..23048,aa:Val,seq:tac)
     gene            23140..23216
                     /locus_tag="SB854_000509"
     tRNA            23140..23216
                     /locus_tag="SB854_000509"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23174..23176,aa:Asp,seq:gtc)
     gene            23221..23296
                     /locus_tag="SB854_000510"
     tRNA            23221..23296
                     /locus_tag="SB854_000510"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23254..23256,aa:Lys,seq:ttt)
     gene            23316..23391
                     /locus_tag="SB854_000511"
     tRNA            23316..23391
                     /locus_tag="SB854_000511"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23349..23351,aa:Arg,seq:tct)
BASE COUNT         8350 a         2867 c         4320 g         7858 t
ORIGIN      
        1 cttgtaaaat atctaaatct tcttgtctta aatcaataat tttaaattct gacattttta
       61 accttttaaa aataatttca aaatttatca aaagaattta aaaattactc ttaatcaaaa
      121 gcaatttata agtaagatta agataaaata caagtttatt ttataatttt ttaaggaaaa
      181 atcaaatgaa aagaacctat cagccacatg gcactccaag aaaacgtact catggttttc
      241 gtgttcgtat gaaaactaaa aatggtcgca aggtgatcaa tgcaagacgc gctaaaggta
      301 gaaaaagact tgctgtgtga aaaattttga taaatttagc acaaacgagg aattttcatc
      361 tgtatacaaa ataggtaaaa aatggcattg cgaaggtgtg attatttttt atctgaatag
      421 ttatgaaaaa aaaatagcag ttgttgctag taaaaaagtt ggaaaagcag tggttagaaa
      481 tcgttcaaaa cgaattttaa gggctttgtt tgctaagttt gaaagatatc ttcgagatgg
      541 caaatatatt tttgtagcta aaaatgaaat cactgaactt tctttttcta ggttagaaaa
      601 aaatctaaaa tggggattga aaaaactaga atgtttcaaa tgatatgcct aaaaatactc
      661 cgtttttatc agaaattctt aagcccttta aaacccgctg cttgtaggta ttatcctagt
      721 tgttctgagt atgcgctttg gcagtttcaa aaaaagaatt tttttctagc ttttttttct
      781 acttttttta gagttttaag atgcaaccct ttttttaaag ggggttttga ttatcctaga
      841 gtttctaaaa atttttatcc tataaattta tgttttaagc ctatattttt agcaaaaaaa
      901 caactttgtt ttttatatat accttataaa aataaaagtt tttatcttat aaaaatcatc
      961 tttaaaagga caaatcagtg aataattcaa ataatatttt tcagcaaaag cgtatacttt
     1021 tagctgttgt gatttctttt ttattttttg ttgtttacga ttattttttc attccaaaac
     1081 aacctttaaa aatagaacaa aacattacac aacaaaatca acaaaacaca agcataaata
     1141 acactcctaa tatacaaaat accaccacaa atactccaag tgcggcttta gtttcgcaag
     1201 atagtgtgat atctaaggtt caaagcaagc attttgaagc acaaattgac tcttttggta
     1261 gaatttctgc tttttattta aaagataaaa aataccaaaa tgagaaagga gaatttataa
     1321 atcttgttag caaggaaaat agtccttatc ctttagaaat gcgttttagt gatccaagta
     1381 ttaactcaga ggcttttaaa attccttatg ttgctaacgc tagcaatctt tttgttgatg
     1441 aaaatggaag tcaagtttta aaactcactc aaaatctttc tggattgaaa atcgaaaaag
     1501 atattacttt ttatccaaaa ggaaattatg agatagaagt taaactcagc aagaatgcaa
     1561 attattttat aagtccagga tatcgtccaa atattgccgt agatagttat acagttcatg
     1621 gtgctttggt aatggataat aaagaaacca tcgaaactta taaagatgga gatgtagaaa
     1681 aggatgaaag tgctaataat gtcgtaatga cttcggcttt tgatagatac tatgcaactt
     1741 tcttttataa ttttgataaa cctttaaatg tggcaatcag caaggatgct aatcaaaacc
     1801 ctatagtttt tgcttatagt gataatgaat ttaaagcagg gggctatata ggctctaaag
     1861 aacatgtgat tttaagaagt atagatccac gccttgaagc agttgttgaa tatggttggt
     1921 ttacttttat tgctaagcct atgtttgagt ttttgaattt cttgcatcag tatataggaa
     1981 attggggttg ggctatcgtt gtgatgactt taattgtgcg tattatttta ttcccgctaa
     2041 cttataagtc tatgatttct atgaataaac ttaaagatct tgctcctaaa atgaaagata
     2101 ttagagagcg ttataaaggc gatccacaaa aaatgaatat gcacatgatg gagctttata
     2161 aaaaacatgg tgcaaatcct atgagtggtt gtttgcctat acttttacaa attcctattt
     2221 tctttgctat ttatcgcgtt ttgcttaatg ctattgagct aaaagcagct ccttgggcgt
     2281 tttggataca tgatttatcg gtaatggatc cttatttcat tttgcctatt ttaatgggtg
     2341 caacgatgtt tttacaacaa cttattacac ctatgactat acaagatcct atgcaagcta
     2401 agattatgaa atttttacca gtgattttta cttttttctt tatcactttc ccagcaggac
     2461 ttacgcttta ttggtttgta aataaccttt gttctttggt tcaacaatgg gttatcaata
     2521 aaatatttgc taaagaacat cacaaaaaac aagcggagca tgaaaaatga aaatcgaagc
     2581 cattgatctt caaagtgcct taacagaagc ttcaagaagt ttagaatgtt ctgtgatgga
     2641 cttagaatat gagattattc agcatccaag aaaaggtttt tttggatttg gaagaaaaaa
     2701 ggcaattata gaggctaaag caaaaaaaag gattttgaaa aaaaatccta aaaaagaatt
     2761 tacaagttca aaaaatcaca aaccagaaac acatgagcca aaacaagaaa acaagattga
     2821 aacaaaaaat gaaaaaaata aaagtcaaaa agaaaaatat acagtaaaaa gtgatgaaat
     2881 ttttgatagt tttcatcgag aaagcaaagg agtgcgtaat actcaggata ttttagatga
     2941 gattcgcatt cagcttgtaa aacttttaga aagctcccag tttaaaatag agcttagtga
     3001 acttagaatg tatgatgaag attgcgtttt gattcgattg gatggggaag atgctgcttt
     3061 gatgataggt aaagaagcac atcgttacaa ggctatttct tatcttttac ataattggat
     3121 caatttaaaa tataatcttt tagtgcgcct tgagatcgct caatttttag aaaatcaaat
     3181 tcaaggtatg cagctttatt tacaaaacgt gattgaaaaa attaaaattc atggacgcgg
     3241 acaaaccaaa cctttggatg gggttttgat aaaaatcgct ttagagcagt taagagctaa
     3301 atttccagat aagtatgtag gaattaagca aaataatgat caaagatttg ttgtaataaa
     3361 cgactttttc aaaaaagatg agtgatacta tagcggctat tgccacagct catggtgtgg
     3421 gttcgatttc tattgtaaga ttaagcggtg aaagggcttt agaatttgcc ttaaagctta
     3481 gccacaaaac caaacttacc ccacgccatg ctacttttac aaaacttttt aatcaaaata
     3541 atgaaattat cgatgaagct ataatgatat attttaaagc cccttatagt tttacagggg
     3601 aagatatagt agagtttcaa actcatggag gatttagtgt gagtgaagtt ttactcgaag
     3661 aacttgtgag tttaggagca agacttgctt tagcagggga atttagcaaa agagcgtgtt
     3721 taaatggcaa aatgactcct ttaaaagctt taaatataca agatctcata ctttcaaaat
     3781 ctgcacttgc agctaaaatt atagcacgca acatgcaagg aaacttagga gaacttttag
     3841 aaaaaattcg cacagatttg gttaaaactt tagcttttgt agaaactagt attgattatg
     3901 ctgatgatga tttaccttct gatttattag aacaaatttc tactatgtgt gaagaaaatt
     3961 ctaaaatttt aaaagaaatt tatacgcttt ctcaaagcaa aaaaggactc atagaaggtt
     4021 ttaaaatcgc tattgtaggt aagccaaatg taggcaaatc ttcgctttta aatgccttgc
     4081 tttcttatga aagagctatt gtttcagata tagcaggcac cactcgtgat actatagaag
     4141 agagctttaa attaggaacg catttattac gcattataga tacagcgggt attagggaaa
     4201 gtaaagatgt tatagaacaa atcggcgtag ctttaagtaa aaaaagttta gaagatgcag
     4261 atattatttt ggcagtcttt gatgcttcaa gagtgcaaga taaagaagat gagaaaattt
     4321 ttgacttatt agcaaatact gataaaaaaa tcttttggat tttaaataaa agtgatttag
     4381 aaaatgtttt caaaaatact caaaataaaa attttatcaa gcttagtgct caaaaagaca
     4441 tcactttgtt aaaagaagaa ttgcaaaatt atcttaattc ttttgatagt gaaggtatta
     4501 tggtaagttc tttagatctt attaatgctt gtaaaatttc aagtgaagcg atttttagag
     4561 ctaaggggct tttagaggaa agttctttag aactttttgc ttttgaactt aatttagcga
     4621 ttaatgaact tgcaagattt accaaagatt ttcaaagaga tgaaatttta gacgaaatgt
     4681 ttggtaattt ttgtttagga aaatgaaagg ataaaaatgg acaaagaaac cataaaagca
     4741 cacaaaatta gcgatgaaga atatgcacaa attttagaaa ttttaggacg tgagccaaat
     4801 ttattagagc ttggggttat ttctgcgatg tggagtgagc attgctctta taaatctagt
     4861 aaaaaatatc ttaatggttt tccaactaaa gcaccttggg tgattcaagg cccaggtgaa
     4921 aacgcagggg ttattgatat cgggcaaggt atggcagcag tttttaaagt agaaagtcac
     4981 aatcacccta gctttattga accttttgca ggtgcggcta caggagtagg gggaatttta
     5041 cgtgatgttt ttactatggg tgcaagagtg gttgcagggc taaattcttt aaaatttggc
     5101 aatattcata atgaaaaatg cggcaaacat caaaaatacc ttgttaaagg tgtggtaaat
     5161 ggaatttctc attatggaaa ttgcatgggt gtgccaacta taggtggaga atgtgctttt
     5221 gatgagtgtt ttaatggaaa tatcttagtt aatgcctttg ctttaggggt ttgtaaaagt
     5281 gaagatatct tttatgctaa ggctgaaggt gtaggaaatc ctgtgattta tgtgggttca
     5341 aaaacagggc gtgatggact tggtggagcg gttatggcaa gtgatagctt caatgaagaa
     5401 agcaaatctt tgcgtcctac agtgcaaatt ggcgatcctt tcagtgaaaa acttcttatg
     5461 gaagcttgtt tagagctttt taaaactgat tatattgtgg gtattcaaga tatgggtgct
     5521 gcagggctta cttcaagttc ttttgaaatg gcaggaagaa gtggcagtgg catgaaactt
     5581 tacttagata aaactcctat acgtgaaagc ggtatgactc cttatgagtt aatgcttagc
     5641 gagtctcaag aaagaatgct tatttgtgcg aaaaaaggct atgaagataa ggttatagaa
     5701 attttcaaaa aatgggattt agatgctgtg gttataggtg aagttaccaa tacaggaaaa
     5761 atggagcttt tttggcatga tgagcttgta gggcttattc ctatcgagcc tctaagtgaa
     5821 aaagcgccga ttttaagtcg tcctataagt gagccaaaat atttaagtga aattaaagat
     5881 tataaatttg agttaaaatt aagcattcaa gagcttttta tacaaatgct tcaaaatgaa
     5941 aatattaaca acaaagcttt tatttatgat caatttgatt caagtgtgca aaccaatact
     6001 ataaaagctg atggaagatt aggtgctagt gccattcgta tcaaagaaaa tggcgcaagt
     6061 gtggctatgg ctatagaatg taactcacgc ttaaattatg taaatcctaa aataggagca
     6121 gctttagcag tagcttcagc aggaagaaaa gttgcttgta cgggggctaa gcctttggca
     6181 ataagtgatt gtttaaatta tggaaatccg caaaatcctg aagtgatgtg gcaatttgca
     6241 caaggttgcg aaggcattaa agaagcttgt aaagagttaa ataccccagt agtaagcggc
     6301 aatgtttcac tttataatga aactgaaggc gtaagtattt atccaagtcc tactatagta
     6361 agcgtagggg ttttagaaga tgcaaataaa accttaaaag ctagttttga aaaagaaaat
     6421 ttaagtgttt atcttttggg tgaaagttta ggggaatttg gtggatctat ggtaatgaaa
     6481 atccaagata aaaaagtatc aggaagtctt aaagagcttg attataaagc tgaaattgca
     6541 ctttgggatt tgctttataa agccaatcaa aattctttac ttgagtgtgc caatagcgta
     6601 ggaatagggg gtattgctat gactttggca aaaatgtttg ctatttctag tgtaggtgca
     6661 aatttaacaa gtggttttga tgatgaaaaa atgatttttg atgagagtgc aagtcgtgct
     6721 atagtagggc ttagtaaaga aaatgaagaa gcttttttaa atttagctaa agaatttgga
     6781 gtaaaagctt ataaattagg tgtgagtact agccaaaaac attttaaact tgatagcatt
     6841 gagttaagca aggctgaact tgataagctt tattttgaaa gttttaaaga gcaaatccaa
     6901 tgactttagt tttaattata ctcgttgttt tggtgtttta ctggtattat aaaacttggg
     6961 gaaaacagga ttttttaaac tcagctacaa gaggagccaa aggctttgct aagggttttg
     7021 ctcgtggggt tatggaagaa agaatggatg agtttaaaag gcgtatgaat tactatgtta
     7081 tcgcactttt ggcaaaaatt gcaaaaagcg atggcagagt aagtgaaaat gaagctgaaa
     7141 tgatcaaaga tcttttagat gcaaatgcca aagatgaaaa agaaagagct tttttaaaag
     7201 caagttttaa tgaacataaa gaaaatttaa gcgatgcttt ttacgtggca aaagattttt
     7261 taaaagaagt acctttacct aaaaatgagc gttttaatgt tttgcgtgtg cttgttttta
     7321 tggctttaat cgatgcagat tttaatgcta aaaagcgtga aattttagag caaatcgcta
     7381 aagcctttga tatagcaaaa agcgaattag acgcttttat agcaagtctt tcaaatttaa
     7441 aaagttctaa aaaagaatta agtcttgatg aagcttttac tattttagaa cttccaaata
     7501 atgcagattt aaatgcggta aaaaaacaat accgcaattt agcaaaaaaa tatcatcctg
     7561 atattttaaa tgcaaacaat gttagtgaag aagagcttaa aatcggtgta gagaaatttc
     7621 aaaaaatcaa cgaagcttac gaaaaagtta aaaaacattt agaaaggtaa aaatgagagc
     7681 attgcttagt gtgagtgata aagaaggtat agtagaattt ggcaaagagc ttgaaaattt
     7741 aggctttgag attctttcaa caggtgggac ttttaagttt ttaaaagaaa atggaataaa
     7801 agttatggaa gtgagtgatt ttacaaaaag tcctgagctt tttgaagggc gtgtaaagac
     7861 tttacaccct aagattcatg gtggaatttt acacaaaaga agcaatgaaa atcatatcaa
     7921 acaagcaaaa gaaaatgaaa ttttaggaat tgatctagtt tgtgtgaatt tatatccttt
     7981 taaaaaaacc actatcatga gtgatgattt tgatgaaatt atagaaaata tcgatatagg
     8041 tgggcctgcg atgataagaa gtgcagcaaa gaactataaa gatgtgatgg tactttgcga
     8101 tccgcttgat tatgaaaaag tcatcgagac tttaaaaaaa ggtcaaattg atgagaattt
     8161 tcgtttaaat ttgatgataa aagcttatga gcatacggca aattatgatg cttatattgc
     8221 aaattatatg aatgaacgct ttaacggagg ttttggagcg agtaaattta tagtaggaca
     8281 aaaagtattt gatgcaaaat atggagaaaa tccacatcaa aaaggggctt tatacgagtt
     8341 tgatgccttt tttagtgcaa atttcaaagc ccttaaaggc gaagcaagtt ttaataatct
     8401 aaccgatatt aacgcagctt taaatttggc tagtagtttc gataaagctc cagctattgc
     8461 tatagtaaaa catggaaatc cttgcggttt tgctataaaa gaaaatttag tacaaagcta
     8521 tatacatgct ttaaaatgcg atagcgttag tgcttatgga ggagtggttg caatcaatgg
     8581 aactcttgat gaggctttag caaataaaat caatgaaatt tatgtagaag taatcatcgc
     8641 agccaatgta gatgaaaaag ctttagctgt gtttgaaggt aaaaaacgca ttaaaatttt
     8701 cactcaagaa agctcatttt taatccgcag ttttgataaa tatgatttta aacatattga
     8761 tgggggtttt gtatatcaaa acagcgatga agttggcgaa gatgagttta aaaatgcaaa
     8821 gcttatgagt caaagagagg caagtaagga agaattaaaa gatcttgaaa tcgccatgaa
     8881 aatagcagca tttaccaaat caaacaatgt tgtttatgta aaaaatggcg ctatggtggc
     8941 tataggcatg ggtatgacaa gcagaatcga tgcagcaaag gtagcaatcg ctaaagctaa
     9001 agaaatgggg cttgatttgc aaggttgcgt tttagcaagt gaagcctttt ttccttttag
     9061 agatagcata gatgaagcaa gtaaagtagg agttaaagct atagtagaac caggcggaag
     9121 tataagagat gatgaagtgg taaaggcggc tgatgagtat ggtatggcgc tttattttac
     9181 aggagtaaga catttcttac attaagttta atggaatgtt atgtttttta cacataattc
     9241 aataaaaatt aaataaatta tgtgtaaaat atttccgaaa aattttattt ttaggaaact
     9301 atgatgttta aaactatagg atttaaggtt tctgctgcaa tttttgtggt gttgcttata
     9361 agtttcattg taatgcaagt gattttaaat ttggatttta aaaatactgc caataaaatg
     9421 agcagggcaa atttaaatac cgtaagtact tctgtttttc aaacaatgag aatggctatg
     9481 aatttaggag atcctgaaaa aattaaagaa gccattgaag atgtaaaaag tatagagggt
     9541 attagtgata ttaaaattta tccttcaaaa gatactatag atctttttga gatgaaagcc
     9601 cctcaaattt caaatgataa gcgtattata gaacaatttt caaatcctaa aattcaagct
     9661 ttggaagaaa atataaatgg tgttgtgtat ttaagattga tacgcccttt gattgcagat
     9721 gaaagttgtg ttacttgtca tgaaatgcta atacaggaag tgtgattggg gttatggata
     9781 tatcacattc tttagaaggt gtttaaaaag atataagcaa aaccggtcaa tcttatatta
     9841 taatatttac tattgctttg atttttaccc tttgtggtgg ttcttttaat gcttaaagtt
     9901 gttgttggaa agcccgtttt agagctttta aatcatgcta aagaattagc tcaaggaagc
     9961 ggcaatttta aaagctcgta tttcagttaa aggtcaagat gaaattgctt tagcttgtgg
    10021 atatatcaat caatttatcg aaaaaactca caaggcagtt agcagtgcaa gtcataattt
    10081 aaaaaatgta gaaaaacaaa gcaatctttt aaattcaaat gctatttttt aagtgatatc
    10141 agttcacaaa gtcataagca aatagatcaa agttttaaac ttggtgcaaa tgttggcaat
    10201 gaacttagag aacttgctag tttgtcaaat aaggcaaata gtgccaatga aaaatccttt
    10261 ttattattag agcaaatgct taaatctttg tttaatgttg ctaataaagt atcaatagta
    10321 tcccaaaatg aaaatgaatt ggctaaaaaa gttgaaaaca tggttaatca agcaggtaat
    10381 atacaaaaag caactcaaat gatggataag atcgcagata aaacaaaatt accatcccta
    10441 aatgctgaca tagaagtagc tagggctggt gcatttggac taggtttttc tgtaattgct
    10501 gaggatgata ggcagttggc tcagaacagt gaagaatttt tgggaaatgt agttcaaatt
    10561 acaaaagagc ttttgcaaag tattaatgag gttaacgcag aattaaagaa aaatactcaa
    10621 agtatacaag ctttaaatga tgacaccgct ttattggttg atgatgctaa tgaggttaaa
    10681 ttatgtaacg aagatgctag ggctttggta actcaatgta ctgaaaaaat aaaaatttcc
    10741 caagagaata tataaaattt actttctcgt atgcaagaaa atgttgaagt aagtgaaaag
    10801 aatgaagaaa tttctaaaat tctacttcaa gttgtagatg agttaaaaat agtgtgtcat
    10861 aatctcgaaa gcgaacttaa ccaattttaa atttaaagga ataaaatgaa aaaaacgctt
    10921 caaattgctt tagctgcaac tttttttgca ggttgtgcta gtacttctgt tacttcatct
    10981 acttctaaag gtaataatga acttgtacaa aatcagcttt tcaaaataga aaaaattata
    11041 gttaatggta aaacttttga tccaaaaaac gcagaggaaa gtccaaatat tagttttgaa
    11101 aataataaat tttatggtta ttcagggtgt aatcgttttt ttggttctta ccaaactaag
    11161 gcggatactt tgcaaatcga aggtgatcgc gtagcttcaa ctcaaatgct ttgtcatcca
    11221 atggatgtaa tggattttga aaattctttc ctttcaaatt tcaaaggaat ttttaaaatt
    11281 tcaaatgaaa atggaaaact tgttttaagt aatgatgaaa tgaagatctt ttttaaataa
    11341 taccctaaag cctcgaaata tcgaggtaat cttcttaaat ttgacaaaag tctaaaaaat
    11401 gatacaatta taattttatt atcaaaaaag gtagttaaat gataaaatca attcctgaat
    11461 ggagtgagca agaatacctc atgctttctt taccccatga aaaaagcgat tggaatccct
    11521 atttagagga aattttgcaa agttataaag aatttgtaaa agcagtgagt gaatttcaaa
    11581 aagttttact tatagctcct aaacagagtg attttgaaaa ttttaaagat ataaaaaatg
    11641 tagagtattt taaatgtgat accaatgata cttggatacg tgattttgga gctatagata
    11701 taatagaaaa tggtcgttta aaggctcttg attttacttt taatgcttgg ggaaataaat
    11761 ttcaaagtga gcttgataat gctgtaaatt ctaagctttt taaagaaaaa tttaaagagg
    11821 aacttaaaaa ggttgatttt attttagaag gaggaagtat tgactttaat ggagaggatg
    11881 tgatgcttac aagctctcat tgtcttttaa atgaaaatag aaattctcat ctaaacaaaa
    11941 cccaaattga tataaaatta aaagaaattt ttggtttaaa gcaaattatt tggctagaaa
    12001 atggtttcat aaaaggtgat gatacagatc atcatatcga taccttagca agatttatag
    12061 ataaaaatac catagcacat tgtatttgtg aagatgaaga ggatgaacat tatttgcctt
    12121 tgcaaaaaat gaaagaagag cttaaaaaaa caggctttga tttagtagaa cttcctatac
    12181 ctaatccttt atactatgaa ggaagaagat tgggcgcaac ttatgcgaat tttgttttta
    12241 taaataatgc tttaattgtg cctttttata aggataaaaa tgatgaaatc atagctaaaa
    12301 gactttctaa agctttacct agtcataaaa ttataggagt agatgcaaga gtgtttttac
    12361 gacaaaacgg ttctttgcat tgttcttgtc aaaatcgttt caaaggttta agatgagttt
    12421 gcaaaaaaaa gcaactcttg tagcaagttt atgtgccatt gttttagcct tggttaaatt
    12481 tatagtaggc ttaacaagtg gttctgttgc agtactttca agtgcgattg attctttaat
    12541 ggattttgct atttctgctt ttaatttttt agctcttaaa aaaagctcac aaaaggcgaa
    12601 tgaaaattat aattttggtt tttctaaaat tgaagcttta atgggtttgt tagaaggtgt
    12661 ttttatagtt ggcgtgggga tttttatttt ttatgagagt attttaaaga tttattataa
    12721 agaagaaatt aaagatttaa attcaagcat ctatgtgatg atttttgctt taattatgac
    12781 tttttttctt gtgctttttt taaattatgt agctaaaaaa accaaaagtt tgattataga
    12841 aagtgatgct ttgcattaca aaacagattg cttaaccaat gcttgtactt taggggcttt
    12901 ggttttgatt tattttacaa atttacatat tattgatgct atttttggga tagtgatcag
    12961 tctttatacg gcattttctg cttttaaaat cattaaaaaa gctttggctt ttttaatgga
    13021 tgaggcttta cctaaggaac aagtggataa aatttgtatt ttgatttcta ataatcctga
    13081 aataatttcc tatcatgaat taaagacgcg taaaactcca agttgtaatt atttaagcgt
    13141 gcatttggtt ttttgcccta taatttcgct tttaaatgcg cataaaattt cagatgaaat
    13201 agaagaaggt gtgcgtaaga tgtttgaaaa tgaaaaatgg gatatacaaa ttcatttaga
    13261 tccttatgat gatgcagaac aagaaaggca aagacaatga aaatcgcttt aatacaacaa
    13321 aaatttcact caaacaaaga acaaactata aaaaaaactt gcgaatttat agaagaagcc
    13381 tctaaacaag gagctgagct tgtttgctta ggagaacttc atcaaagtga gtatttttgt
    13441 caaagtgaaa atgtggattt ttttgactat gctaatgatt atgaaaaaga tgtgaaattt
    13501 tgggcaaata tagctagaaa aaatcaaata gtgcttatta cttcattatt tgaaaaacga
    13561 agtgccggac tttatcataa tattgcagtg gtttttgaaa aagatggttc tatagcaggc
    13621 aaatatcgca aaatgcacat acccgatgat ccttgttttt atgaaaaatt ttattttact
    13681 cctggagatt tgggttttga acctataaat acaagtttag gtaagcttgg agtgcttatt
    13741 tgttgggatc agtggtatcc tgaagcagca agaattatgg ctttaaaagg agctgagatt
    13801 cttatttatc ccacggcaat tggttggttt gataaggata aagatgaaga aaaacaaaga
    13861 cagctcaatg cttggcttgg cgtacaaaaa ggacatgcta tagctaatgg tttatatgta
    13921 gtagctatca atagagtagg ttttgaaaaa gatgtaagcg ggatagaaga gggcattaga
    13981 ttttggggaa attcttttgt ttttggccct caaggtgaag aactttgtct tttagattct
    14041 caaaacgaat gtgtaaaaat catagaaata gataaaaaaa gaagtgaaaa tgtgcgtcgt
    14101 tggtggcctt ttttgcgaga tagacgcata gaatattttg cagatttaac taaaagattt
    14161 attgattaaa tcaataaatc ttatttgttt tgtatatttt caagatagct ttttatttgc
    14221 tctttttctt gttcatttaa atttataaaa cttatttctt taagtcttga taaaagcaaa
    14281 ttatcttcta aaatttcatt ttttcctatt tctaaagaag tgatgacgct agaacttatg
    14341 agaagtcttt gggttgtatc ttttcttaag ccccatatat tatgtatggc aatattatta
    14401 tctgtaattt gtcctgcata aagcataata tgtccaggta aataaagtaa gcttaaataa
    14461 gcttttccaa agcgatttaa aaaatctttt ttttgagaat tgctaagagt gcttatatca
    14521 aaatgattaa aagaattttt ttgtgcagct gaatttcttg gtagataaag tccaaaagct
    14581 gaaaagatat cacgagttag taaagaacaa tctctttcaa aattataacc gccccagcca
    14641 taaggcaaat ttaaaacttg tgaaagttga ttttttaaat ttttatcatt gaattgtaaa
    14701 ggaaatttag atacatcttt tttagaaatt ttatattttt tagaacctat ttttccataa
    14761 aaatagtttt tatcttcttt gtagtaagga tagatagcac caattctact ttcaaagaaa
    14821 aatttaccat cctcgctata gatagcaaat ttttctttta gtggtgtgat aaagttgaga
    14881 ttttcataga ttttcgctct attgtttgag aaaaattcca aatttttact ttcaacaaat
    14941 ccaaatccag cttcacctaa aacaaaagca taacgcttat ctttactaaa atgtgaaatt
    15001 aagacagggg atccagtatt taaaatgcca tcgcttgcat agtcaaaagg aattccttca
    15061 ttttcaaaaa aaggattttt taagatagct ctttgggttg gaagattttt aatgattgta
    15121 ttttggataa tcaaagcttt ttgattaagt ttgccaaatt cttggatatt tgcgttattt
    15181 atagcatttt taaaccatga aagcggaata atttgtttat tgaaaaaata ataagtattt
    15241 tttgaattta aatataaagg aaaggaccaa aaaatatttt gtcctttgta gtttttaaat
    15301 gaatcatgcc aagggttaaa gaaatatttt ttatatcgtt ttgcatcaaa attaatatcg
    15361 taagcaaatt gtggcaaaat gcttacattt tgttcgtatt caagttttgc ataatgttta
    15421 ttttcatttt tttgttctaa attttcatga tggagtgaag ttaaattttt tgttgaacaa
    15481 gctgttaaaa atagcactat aaaagtaaaa tataaacaag atttcataat caacctttta
    15541 gaaaaaatag ttataattaa agctaaggaa atataatgct tgataaacta gaaaaaattt
    15601 tagcttatga taatgttttt ttaagtggtg gcgctggagt tggtaaaagc tttttgacaa
    15661 atgagcttat caaatcttat agaaaacaaa aaaaattagc catagctctt ggttctagtg
    15721 ctctatcggc gtttaatata ggcggtgtta ctttacacag ctttttttgt ttagggcatt
    15781 gtgatgatat gatgaaatta agtgcattgg atcgcaatca aaaacaaaaa gaaaaattaa
    15841 caaaacttaa agagctttta aaaacgattg agcttattat tatcgatgaa atttccatgg
    15901 ttagcgcaaa tgtttttgaa atgataggct ttagacttaa aaattctcaa tttaatggaa
    15961 aaattttagt tgttggagat ttttttcaac tgcctccagt aattaaagaa aaaaaagaaa
    16021 ctttatttaa ccattcttat tatgtttttt cttcattttt ttggcaagat ttaaatttta
    16081 agaatattaa actttctcaa cctaaaagaa cgcaaaatat ggaattttat aaccatttat
    16141 ctttgattag acaaggtttt ttagatgaaa aaattttaag cttttttgaa tctttgcgaa
    16201 ttgattataa agaattagaa aatttagaag atgattatac tttactttgt ggtatcaata
    16261 aaaaagtaaa caatatcaat caagaaaaat taagcaaact tgataccccg cttgtatgct
    16321 ttaaggctca ggttaaaaaa gaagataaga gaataaaaga tgaagagctt gattcttgga
    16381 ttagaagctt aaatatattg gaagaattaa atattaaaat aggcgctcgt attatttttt
    16441 gcgtaaataa ttgggataag aattattata atggagagca aggtattata gaagatattc
    16501 tttatgaaga ggagaaaatt tatattagca ttattaaaaa taatgggatg aaaattttac
    16561 ttgaacctta tacttttttc atggaagaac ttgagcaatc aggtaaagat tttgttgtta
    16621 atattctcgc aagtgttaca cagtttccta ttaaattagc ttatgctatt actatacaca
    16681 aatcacaagg tatgagtatt gaaaaattag tgtgtgatat tgatcatatt tttgaaaatg
    16741 gacagcttta tgtcgctctt tctcgcgcta caaacccaaa tactttaaaa atttattcta
    16801 caaaaaagat aaattttgga ttttattttg ctaatatttt aaaaatagat tctaatgtga
    16861 ttgaatttta taaaaaacat aattttttag atctcgaaat acaagaacaa atcatttaaa
    16921 ggcattaaat gaaaaaaata tttttaagtg tttttttggt tttgagttta aatgctcaaa
    16981 atcttgaaat agataaaata agaacagatt tgtattctaa aagtgggaca aatgttctta
    17041 aaaaagtcga aatttctttg gaatttgatg ggaataattt aaaagaaaat gaaaataagt
    17101 taattgatgc tgtaaataca gtaatttcag ggttttttta cgaagatatt tttacagaaa
    17161 ttggaaaaaa taatttcaaa aaaactttag aaaaattttt agataagaag tataagattg
    17221 aattagatga tatatatatc atatctttaa gcggagtgga aaaatttgat ttagaggagt
    17281 ttaaacgctt tttagaaagt actgaggcta aagagaaggg tatgggtagc gaggtaaaaa
    17341 aagcacttga aaatttagaa gttcctaaaa ctcaagttcc tagtgttgaa aagatcccaa
    17401 ctcctagtgt tccaaattta gaagtcaagc aagttgaaca gcttttcaaa gatccagatg
    17461 aagaaaataa aaatgacaat ggagaaatca atatagataa tttaaataca cctaaaatga
    17521 ctccagatat agaagaaaaa attaaaagag atttaatcgc caatcctcca caaatattca
    17581 aagaaaataa cgcaagcaag ccttatcatt tgccacaaac aggctatgat ataaagcttg
    17641 atgagaattc aacgcaaaat tagcgaacta tatcataatt ttgcggaatt tttgccttga
    17701 aaatatcgga gttgattttt ggatttttaa tttgattgtt tagattgatt ataacatcat
    17761 tttcaaattc atctttatag gatatgcttt gaatttgctc ttgattaagc ttaattgtat
    17821 agtttatatt atcatatttt gctgcaagtt tatccttgtc tataagactt gcttttttga
    17881 aaatttcatt aagatttgga atgttatcaa gatgagagaa aatgacttgt tctagatcgt
    17941 gctctactat ggttacttga tttttgttga tataaatctc ttttttacta ggagtatcat
    18001 aactccaata tgcttgatct ttgctcagta taaaatgccc agaataagaa agtgtagagt
    18061 ttttggattt cactatttgg gtaaaattgc ttgaaaaggt attaaaatta agatcaaggg
    18121 caaaaagttg tcctataaaa ataaaaaata tcaagaatgt ttttttcatt tattttcctt
    18181 aaaaaaaata tattttttat gtcattctag ctaattttaa ttaaataatc gttataatga
    18241 tagtttgaaa aatttataaa ggtttaaaaa tgtttttaaa tactttaaaa gccgtgtttg
    18301 gcacaaaaaa tgatcgtgaa gttaagaaat atttcaagcg tgtagcacaa atcaatgctt
    18361 tagaaggcaa ctatcaaaat ttaagcgatg atgaattaaa agccgaattt gcaaaattta
    18421 aagagcaaat tttaagcgga gaaaaaaacg aaaatgatgt tttaaatgat gtttttgcta
    18481 tagtcagaga gacaggtaag agaactttaa atatgcgtca ttttgatgtg cagttaatcg
    18541 gtggtatggt tttgcacgat ggaaaaatcg cagaaatgaa aacaggagaa ggtaaaactc
    18601 ttgtagcaac cttacctgtt gttttaaatg ccatgagtgg caaaggcgta catgtcgtta
    18661 cagtaaatga ttatctagcc aaaagagatg ctgagcaaat gagtgcgatt tataattttt
    18721 taggttttag tgttggcgtg gtgctttctt ctcaaaatag tgatatagaa cacaagcaag
    18781 cttatgattg tgatattact tatggaacca ataatgagtt tggttttgat tatttgcgtg
    18841 ataatatgaa attttcaaaa gctgaaaaag ttcaaagaga gcataatttt gttatcgtag
    18901 atgaagtaga tagtatttta attgatgagg caagaactcc gcttatcatc agtggtccta
    18961 caaatcgtac tttagatggt tatattaaag ccaatgaagt agctaaacaa atgcaaaaag
    19021 gtgaagcagt tttaccccct gcaaaacctg agggtgattt tgtagtagat gagaaaaatc
    19081 gtaatatttt aattacagaa gcaggtattg ctaaggctga aaaacttttt ggcgtagaaa
    19141 atttatacag tcttgataat gctatcttag ctcatcagct tgatcaagcc ttaaaagcac
    19201 ataatctttt tgaaaaagat gtgcattatg ttttaagaaa taatgaagtt atcatcgttg
    19261 acgaatttac agggcgttta agcgaaggac gtcgttttag cgaaggattg catcaagctt
    19321 tagaagctaa agaaaatgta aaaattcaag aagaaagcca aactctagca gatattactt
    19381 ttcaaaatta ttttagaatg tacaataaac ttgcaggtat gacaggaact gcacaaacag
    19441 aagcgactga attttctcaa atttatagtt tagatgttat ttctataccg acaaatattc
    19501 ctattaaaag acaagataaa gatgatctta tctataaaac tcaaaatgaa aaattcaaag
    19561 ctgtaattga agagattaaa aaagccaatg ctaaaggtca gcctgtactt gtaggaaccg
    19621 caagtataga gcgcagtgaa gtttttcaca atatgcttgt aaaagagaaa atccctcatc
    19681 atgttttaaa tgctaaaaat cacgagcaag aagctttgat tatccaagat gcaggtaaaa
    19741 aaggtgctgt aactatcgct acaaatatgg caggtcgtgg tgtggatata aaaatcgatg
    19801 atgagattag ggctttgggt gggctttata tcatcggtac agaaagacat gaaagccgcc
    19861 gtattgataa tcaacttcgt ggtcgcgcag gaaggcaggg tgatcctgga ataagtcgtt
    19921 tttatctaag tttagaagat aatcttttaa gaatttttgg tggggatcgt attaaaagta
    19981 ttatggatcg cttgggcata gaagagggcg aaagcataga atcaagaatc gttacaagag
    20041 cggttgaaaa tgcgcaaaaa aaagttgaaa gcttgcattt tgaaagcaga aagcatttgt
    20101 tagaatacga tgatgtagca aatgaacaaa gaaaaactat ttatcgttat cgtaatgagc
    20161 ttttagatga aaactatgat attagagcta aaatttctca aaatatcgct gaatatagcg
    20221 caaatgtaat gaatgattat atgcttgacg aaagcggttc taatgtaaat tttgaaaatt
    20281 tgaaagcaaa aattttgtat gaatgttcaa ctcagattag tgaaaaagat tttgagaatt
    20341 taagcgtcat tgaaatgcaa gacaagctaa gtcaaattct tgaaaattct tataatgaaa
    20401 agatgttaag acttgagatt aaagaattgc gtaatataga gcgtatttta tatttgcaag
    20461 ttttggataa tgcttggaga gagcatttgt atcaaatgga tattttaaaa acaggaatag
    20521 gacttcgtgg atacaatcaa aaagatcctc ttgtggaata taagaaagaa agttataatc
    20581 ttttcttgga gttggtcaat cgtattaaat ttgatagtat taaactactt tttagcgtgc
    20641 aatttaatca agaagaggcg caaaatttag aaaataaagc caatgaagaa aatgaaaagc
    20701 tacttcaaag ctcagtagaa atgggcgcaa gcgaagataa tcttggcgaa gctgaattta
    20761 aaaaagttcc acgcaatgct ccttgtcctt gcggaagtgg aaaaaaattt aaagaatgcc
    20821 atggaaaaag tggtcctaag caaggaattt tagcttgaat aaaagcgttt taaaatattt
    20881 actttttaag tatttaagat ttgataaaga gcaacccttt atcaatcttt ctatgctttt
    20941 ggccttttta ggagtttgtg taggactttg cgttttgctt gtagctatgg caattatgaa
    21001 tggttttgat aaagaatttg aaaaacgctt ttttgtgatg aattatccta ttactatttt
    21061 gcctaaattc tacgctcctg taaatgatga atttatagat gagttaagaa aaacatttcc
    21121 aaatttgtta tttagccctt atttaagcac tcaagttgtt gtaaagggag ataatcgttt
    21181 tgaaggtggt gtgctttttg gcgttaattt taatgatgaa aaaaaaataa acgaagtggt
    21241 tgctaaagct ttaaaggatg agaatttaag tggttttgat atacttgtag gatcagcact
    21301 tactgatgaa tttggtttgc ataaaaatga caaactttca cttatttttt caaatcttaa
    21361 tcctagtgga ttttctttag taccgcaaac taaacgtttt gatgttaaag cgcgttttac
    21421 ttcagggctt gcattttatg ataaagctta tatgtacaca gatgttgatg cattgaaaaa
    21481 agtacttgga atacctaaaa atccaaatta tgatggaatt catgtatata gcaataatgc
    21541 ttttaaggat gttgaaaaaa ttaaatctta tttaaaagat gattatgttg tggtgggttg
    21601 gtgggagcaa aataaaaatt ttttttcagc cttagaactt gaaaaaagag cgctttttat
    21661 agtgttgatg cttattattt tggttgcaag tttaaatata gtaagttctt tattgatgat
    21721 agtaatgaat cgtcgcagtg aaatagcact tttacttgct ctaggtgcaa gcaaaaatga
    21781 ggtaaaaaag agtttttttg ccttaggtat gcttattggt ggtggtggta tgatagtggg
    21841 tgtggtactt gcattttttg ctttatggct tttgggaaat tttgatattg taactttacc
    21901 tgttgatgtt tatggaacca gtaaattacc acttgatttg tctttaatgg atttttcttt
    21961 aaccattgtg ggtgctttaa taatcatagc tttatcatct ttttatcctg caaaaaaagc
    22021 aactcaaatt aatattttag atactttaag aaatgaataa attgtaattt tggagatttt
    22081 tattgtcttt gtttactcaa aaaaataaga attttaaacc tttaaaacct ctatcaaagt
    22141 caaaaataat cactaattta attcttttga ttttattttt aatattgttt tgttattgta
    22201 gttttagtat aagtgcttat cattttgatt ttagcgcaat tgcaacctat aaagaaaaat
    22261 ttcttcaagg ttttttaaat actttaataa tcagtttttt ttctttattg ttgagtataa
    22321 ttttgggtgg agttttttgt gctttttctt taagttcgat tgttttttta agatttttat
    22381 ctacatttta catagagctt gtcagaggaa cccctttact agtgcaggta ttattgatat
    22441 attatatcat tgcaaataat ttaggacttg ataatcgata tgtggctgga gttattattt
    22501 tatcatgttt ttctgctgct tacttagctg aaatatttag agctggaatt ttaagtattt
    22561 ctatatctca gcttgagagc gctagggctt tagggttaaa agagatgcag gtttttgcgt
    22621 atgtaatttt tccccaagct ttaaaaaata ttttagcacc gctgagtgga caatttgcaa
    22681 atttaattaa agatagttcc ttattaagcg ttattgctgt aaatgaatta acccaaagtg
    22741 cgcaagagat aaattcttat acttttgcta ctcttgaagc ttatgtaatt ttggctatta
    22801 catatcttgt tttgacttta cctataagta tattttctcg ttatttggag agaaaatgcc
    22861 aaaaatgatt taaaaaagct tgacaaatag agctaatttt ggcataatca catttttatt
    22921 tcagaaaatg tctcgttagc tcagccggta gagcatctcc cttttaagga gggggccgtt
    22981 ggttcgaatc caacacggga caccattata aaggtcgctt agctcagttg gtagagcgcc
    23041 acccttacaa ggtggatgtc ataagttcga gtcttatagt gaccaccatt ttataaaatc
    23101 ataaataggt tttataatct ctacttcttt actttggatg cagcggtagt tcagctggtt
    23161 agaatgccgc cctgtcacgg cggaggtcgc gggttcgagc cccgtccgct gcgccatatt
    23221 gtctcgttag ctcagccggt agagcatctc ccttttaagg agggggccgt tggttcgaat
    23281 ccaacacggg acaccatttt tattgttagg gttatgaccc tttcgtctag tggcccagga
    23341 caacactctc tctgtgtgga aacagaggtt caaatcctct aggggtcgcc aatca
//
LOCUS       DARBBO010000017        21946 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.017, whole genome shotgun sequence.
ACCESSION   DARBBO010000017 DARBBO010000000
VERSION     DARBBO010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21946
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.017"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(16..780)
                     /locus_tag="SB854_000512"
     CDS             complement(16..780)
                     /locus_tag="SB854_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HEG0956546.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCVM
                     ISLVHDNRPVLSLIQNPSKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYSPLNYKSSPFICVSSRNFLQDFL"
     gene            complement(860..2128)
                     /locus_tag="SB854_000513"
     CDS             complement(860..2128)
                     /locus_tag="SB854_000513"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEG0956547.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIVATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(2243..3418)
                     /locus_tag="SB854_000514"
     CDS             complement(2243..3418)
                     /locus_tag="SB854_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HEG0956548.1"
                     /translation="MHQSVIDTQALIDLKILIVIALCLLFSPHIAKILRLPLSATEII
                     LGAIIAHFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEIAKKSFFYIFL
                     LYALSSFIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDERLYSALILTALFEAIIVMSMIKFLSNSKK"
     gene            complement(3399..4235)
                     /locus_tag="SB854_000515"
     CDS             complement(3399..4235)
                     /locus_tag="SB854_000515"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HEG0956549.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAYVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLESSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLSADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLRERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(4237..6339)
                     /gene="topA"
                     /locus_tag="SB854_000516"
     CDS             complement(4237..6339)
                     /gene="topA"
                     /locus_tag="SB854_000516"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEG0956550.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKSAIENALKNPRKLNMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     ITNKDRAKLILEACKNEVYSISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAVENARKFIQANFGKDYLPSKANVY
                     TTKTKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMSPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGQNLKVQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVTIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGTFLECLKCKIKKEMKD"
     gene            6534..7805
                     /locus_tag="SB854_000517"
     CDS             6534..7805
                     /locus_tag="SB854_000517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0956551.1"
                     /translation="MNDKTYKFHPNDTKMDKKIIQITEKSGFKAAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGVTLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     MDKFGKLKFILPAMVVWTISGISGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIETKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFLLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARSRAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLIWSIVIFIVCIVFLFLKQKPRIN"
     gene            complement(7833..9098)
                     /gene="secY"
                     /locus_tag="SB854_000518"
     CDS             complement(7833..9098)
                     /gene="secY"
                     /locus_tag="SB854_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEG0956552.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYIELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSSYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            complement(9098..9490)
                     /locus_tag="SB854_000519"
     CDS             complement(9098..9490)
                     /locus_tag="SB854_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEG0956553.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISVTGSK"
     gene            complement(9495..9938)
                     /gene="rpsE"
                     /locus_tag="SB854_000520"
     CDS             complement(9495..9938)
                     /gene="rpsE"
                     /locus_tag="SB854_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEG0956554.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            complement(9950..10306)
                     /locus_tag="SB854_000521"
     CDS             complement(9950..10306)
                     /locus_tag="SB854_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEG0956555.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            complement(10316..10852)
                     /gene="rplF"
                     /locus_tag="SB854_000522"
     CDS             complement(10316..10852)
                     /gene="rplF"
                     /locus_tag="SB854_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEG0956556.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            complement(10931..11326)
                     /gene="rpsH"
                     /locus_tag="SB854_000523"
     CDS             complement(10931..11326)
                     /gene="rpsH"
                     /locus_tag="SB854_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEG0956557.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            complement(11336..11521)
                     /locus_tag="SB854_000524"
     CDS             complement(11336..11521)
                     /locus_tag="SB854_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001085694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEG0956558.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            complement(11523..12068)
                     /gene="rplE"
                     /locus_tag="SB854_000525"
     CDS             complement(11523..12068)
                     /gene="rplE"
                     /locus_tag="SB854_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEG0956559.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            complement(12072..12305)
                     /locus_tag="SB854_000526"
     CDS             complement(12072..12305)
                     /locus_tag="SB854_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEG0956560.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            complement(12305..12673)
                     /gene="rplN"
                     /locus_tag="SB854_000527"
     CDS             complement(12305..12673)
                     /gene="rplN"
                     /locus_tag="SB854_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015106543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEG0956561.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            complement(12673..12924)
                     /gene="rpsQ"
                     /locus_tag="SB854_000528"
     CDS             complement(12673..12924)
                     /gene="rpsQ"
                     /locus_tag="SB854_000528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEG0956562.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            complement(12934..13119)
                     /gene="rpmC"
                     /locus_tag="SB854_000529"
     CDS             complement(12934..13119)
                     /gene="rpmC"
                     /locus_tag="SB854_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEG0956563.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            complement(13106..13531)
                     /gene="rplP"
                     /locus_tag="SB854_000530"
     CDS             complement(13106..13531)
                     /gene="rplP"
                     /locus_tag="SB854_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEG0956564.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            complement(13534..14235)
                     /gene="rpsC"
                     /locus_tag="SB854_000531"
     CDS             complement(13534..14235)
                     /gene="rpsC"
                     /locus_tag="SB854_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEG0956565.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            complement(14235..14660)
                     /gene="rplV"
                     /locus_tag="SB854_000532"
     CDS             complement(14235..14660)
                     /gene="rplV"
                     /locus_tag="SB854_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEG0956566.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVIVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKSEEKKTVAKKTTTTKAPAKKTASTKKATVKKES"
     gene            complement(14671..14952)
                     /gene="rpsS"
                     /locus_tag="SB854_000533"
     CDS             complement(14671..14952)
                     /gene="rpsS"
                     /locus_tag="SB854_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEG0956567.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            complement(14954..15784)
                     /gene="rplB"
                     /locus_tag="SB854_000534"
     CDS             complement(14954..15784)
                     /gene="rplB"
                     /locus_tag="SB854_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEG0956568.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPAHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVAAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            complement(15786..16067)
                     /locus_tag="SB854_000535"
     CDS             complement(15786..16067)
                     /locus_tag="SB854_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEG0956569.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKIKRFRGRLGQRNNYKKFYVKLPEGVSLENTEA"
     gene            complement(16070..16684)
                     /gene="rplD"
                     /locus_tag="SB854_000536"
     CDS             complement(16070..16684)
                     /gene="rplD"
                     /locus_tag="SB854_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEG0956570.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGVLFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIMEKSVLESITKEG"
     gene            complement(16681..17256)
                     /locus_tag="SB854_000537"
     CDS             complement(16681..17256)
                     /locus_tag="SB854_000537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEG0956571.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTIKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            complement(17266..17577)
                     /gene="rpsJ"
                     /locus_tag="SB854_000538"
     CDS             complement(17266..17577)
                     /gene="rpsJ"
                     /locus_tag="SB854_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEG0956572.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            complement(17775..18536)
                     /locus_tag="SB854_000539"
     CDS             complement(17775..18536)
                     /locus_tag="SB854_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEG0956573.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIADALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLKFNEIRY"
     gene            complement(18572..20566)
                     /locus_tag="SB854_000540"
     CDS             complement(18572..20566)
                     /locus_tag="SB854_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEG0956574.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRISHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(20535..21335)
                     /gene="rsmA"
                     /locus_tag="SB854_000541"
     CDS             complement(20535..21335)
                     /gene="rsmA"
                     /locus_tag="SB854_000541"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEG0956575.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMAQREMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVMSAVMSLIKTKDFDELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDLYLKIYDKLKDEYGRKQRDK"
     gene            21416..>21946
                     /locus_tag="SB854_000542"
     CDS             21416..>21946
                     /locus_tag="SB854_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEG0956576.1"
                     /translation="MIICAGGNENFSFAKAIGIGLVESAFHLSQLCFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSHAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKENLEEYLKKYHY"
BASE COUNT         6581 a         4179 c         3111 g         8075 t
ORIGIN      
        1 attatactct ttattttata aaaaatcttg taaaaaattc ctagatgaaa cacaaataaa
       61 aggactggat ttataattta aagggctata taaaatgtat tttttagaaa aatctcccat
      121 aaatcctcca ttttgattaa tcaaaaaatc tcctgctaca atatcccaaa tattaagctt
      181 ttcaaatctt ttataaactc ctgccctagc ctctaaaata gcacaaaatt tcaatccaga
      241 gcctatatta atagcttcta attgatgctc ttttgcaaag tcttcatctt ctttgctaag
      301 atgattaaca ctcaataagg ctttatattt atttttctcg tattcttgct ggtcaatttg
      361 caaaggttta tcgtttttat aaaccttggt ttttgcatga gcatagaata tatcaccttt
      421 tgatggattt tgtatgagtg ataaaacagg gcgattgtca tgaaccaaac ttatcataac
      481 gcaaaattca tcactgcctt ttaaaaaacc acttgttcca tcaagaggat cgataagcca
      541 aaaagttttt aattcttcac actcttcttt gctgagtaat ttttcttctg atagaatttt
      601 aatatccgta gaacccaaaa tatcatttag aattttatta gaagcaagat ctgctgatgt
      661 aagcgggctt ttatcttctt tttcccaagt tttgaaattt tttctctctt ctaaaatagc
      721 tttagaagct tgattgctag catttatagc aatttctaaa aatttatcaa gattaagcat
      781 gattataaac tttctataag attttttaaa attatacaag aagattttgt ggaattttta
      841 atttccacaa aaattttaat taaattttac tagtttcacc caaataaagt tgtcttggac
      901 ggactatttt aagactttct tgctcttttt gttctatcca ctgagctatc catcctgggg
      961 tgcgccctat aacaaataaa gtagcaaaca tttcatttgg aatacctaag gcttttaaaa
     1021 taagtccact atgaaaatca acattcggat ataaccctct ttgaacaaaa taatcatcgc
     1081 ttaaagcaat ctcttctata cgcgttgcta ctttaataag attggtatca atacccaact
     1141 catcaataag ttgatcacga agctttttca gtacttttgc tctaggatca aaatttttat
     1201 aaaccctatg cccaaagccc atcaagcgga aaggatcgtt tttatcctta gctcttttga
     1261 tgaattcatc taccctatca acactaccta tttgctcaag cattctaata acaccttcat
     1321 tagctccacc atgtgcatga ccccaaagcg caccaatacc tgctgctata caggcataag
     1381 gatgagcatg agttgaaccc acagcacgaa ctgttgaagt tgaagcattt tgctcatgat
     1441 ctgcatgaag cataaaaact gtatcaagtg cttttacttc tataggttta agctctacat
     1501 gatcgtaagg ataggttctt aacatatata agaaattttc tgtaaaacca cgatctaaat
     1561 ttggataagc cataggaaag ccgtgtttat atctataagc ggtggccact atagtaggga
     1621 ttttagctac tattctagct gccatttcca tatattcttc ttttacattc atgtttaaat
     1681 gatcaggata aaaagcacta agcgatgaaa cagcaccttg taaaactgcc ataggatgag
     1741 cattatcagg gaaagaatca aaaagacggt gcataccttc atggataaaa gaacgttttt
     1801 tcatttcata acgaaatgct tcaagacgcg tagcatcagg tagttcttta taaagtaaaa
     1861 gatgaaccac atctaaataa agtttgtttt cagcaagcca ctctatagga tagccacggt
     1921 gcattaaaat tccgttttct ccatcaatat aagtgatttt tgatttacaa gtagctgtag
     1981 aagtcaagcc ctcatcataa gaaaacattc ctgtttgttt ataaaaactt gacatatcta
     2041 caacgcttgg cccagttgta ccatcatata taggaaattc atagcttttt ccatttctat
     2101 tatcggttat agtaacggaa tttgacattt tcgctccttt tattgttact tttattaatt
     2161 ctaacaaaaa aggacgatta tgagtttttt tattattaaa tttttaagat tttgtttgct
     2221 tttttgagta aaaaagtaac tttcattttt tagaattaga aagaaattta atcatactca
     2281 taacaataat agcctcaaat aacgctgtta aaataagcgc tgaataaagc ctctcatcaa
     2341 taaccttgcc cgaataaccc agagtagctg ttgctataag caaggttaaa ggcatagaat
     2401 gactaagacc aaataaaatc atatttttaa aaccaattct ttttaaaaaa acacttgcac
     2461 ataaaattct taaacccacc ataacaaaca taagtaaaaa tgcttgtaaa acgattttat
     2521 aatctaaaat cattttaaga tcaaaggttg aacctatatg gataaaaaaa atagggatca
     2581 aaaacccgtg tccaaaagta gaaagcttgt gctcaagatc ttttttatga tcaaaaaaag
     2641 tagctataaa tgaacctgct ataaaagaac caagaacgat ttcaagtttt gtaataacca
     2701 tagcaacaat gatcagtata aaaatggcca tacaaaatct tatatctttt tcatttttat
     2761 cttcccatgg cataagcaca actttaagct gaggatacca ccaaaaaagc acaccaagca
     2821 ttttaaatcc aagcaaacaa agccccaaaa agatattaag atataaaata ctttgcgcta
     2881 catcaataat acctgttcct tcgcgcaaaa aagctcccgc tatagtcaaa agcacaatag
     2941 aaatcacctc agctaaagta gccactatca tagcaatatt tagccaataa cactcttttc
     3001 caaaatcctt aaaaagtaaa gataaaagcc ctacactcat cacaggtata atgataacaa
     3061 atactaaaga aagtccaaaa atccatacta taaaagaaga taaagcgtaa agtaaaaaaa
     3121 tataaaaaaa acttttttta gcaatttctt tatccatatt aaagaaggct cttaaattta
     3181 cctccatacc cgctataaac attagataat aaaaacctac atttgccaaa agtgcaaaat
     3241 tttcactttt tcctatgaaa ccaaaatgcg ctattattgc ccctaaaata atttcagtag
     3301 ctgaaagagg caagcgtaaa atttttgcaa tatgcggaga aaaaagtaag cataaagcta
     3361 taacaataag aatttttaaa tcaattaaag cctgtgtatc aatgacactc tgatgcaaaa
     3421 gtaaatccca tttcttttaa ttttattata tcttgacttg gttcttcacc tttagtggtt
     3481 aaataatccc ctataacaat agccccagca cctgcttgaa aaatttcata ttgtctttct
     3541 cgtaatacca cttcacgccc acctgctacc attaccacgc tttgcggtaa agcctctttg
     3601 gtatcacgaa caatttttaa ggcttcatca gcgctaagtc ttggaacttg tagttttaaa
     3661 ttttcatttg ctataaaaaa attaataggc gttgaaaaag gttgtaattc ttgcaaagat
     3721 tttctaaaac ttagcctatc ttcttcactc tcacccatac catagattcc accacaacaa
     3781 agcataagcc ctgcttcttt agcgtttaaa ttggtttgaa atctactttc ccaagtatga
     3841 gtggtgcaaa tttgtggaaa aaattcctta gaactttcaa gattgtgatt ataagaaaaa
     3901 attcctgctt ttttaagttc tttgagttgt tccacgcttg ccatgccatt acaggcaatt
     3961 aaaagcaagt taggcacttc tttttgcacg gccttagcag cttcgcaaac atactcaagc
     4021 ttttcatcat caagcccaag tcctgctgta accaaacaaa aacccaaggc ttcatttttc
     4081 tttgccattt ttgcttctaa aacgatttgt gaaagttctt tacgacgata tttttgaata
     4141 tctgttttta cataagcgct ttgggtgcag tatttacagt cttctgaaca atttccactc
     4201 gctatatttg aaatagcaca aagcatgatt tgcattctaa tccttcattt cttttttgat
     4261 tttacacttt aaacattcta agaatgtacc ttttttaagc tcttttatca ctaaagtttc
     4321 gccacactct tcgcattttt cttcacttgg tttgtatttg cttataaaat tgcattttgg
     4381 ataagcacta cagccataaa atttaccacg ttttgaaaag cgttctacga tttcaccttt
     4441 ttgacaactt ggacaagtaa tgcctgtacc attagcttta gcttttgcgg ctgtattttc
     4501 gctttcgttt ttgctttcac tttttaaatt tcttgaatac ttgcattttg ggaaatttaa
     4561 acacgctaca aattctccaa aacgcccttt tctaatagca agctctccgc cacaatcagg
     4621 acaactttcg cctagttttg tgacagtttt ttgactagct atttttgttt ttccttcttc
     4681 gatttttctc ataaaaggat agtaaaattc ttttaaagtt tcttgccaat ctgccttatc
     4741 ttctgcgatt tcatctaggg tattttcaag gtttgaagta aatttactat ctactatatc
     4801 gctaaaattt ttctcaagca cttcggttac attaaaagca acatcgctag gaatgagttg
     4861 ttttttatct attgttacat aatcacggct tgtaagtata gaaatggttg gtgcataagt
     4921 agaagggcga cctatgccta aactttcaag tttttttaca agtcctgctt ctgaatacct
     4981 tgaaggtggt tcggtaaaat gtgagttcat ttctaaattt tgcactttta aattttggcc
     5041 tattttaaaa tttggcaaaa ttttatcctt atccatatca ccataaactt tataatatcc
     5101 atcaaaaagg atttttctac cgcttatttt aaaaactgct ctatcatttt ttacaaatac
     5161 attttgagtt tgagagatag caggactcat ctgacaggct aaaaagcgat tgtaaataag
     5221 tgtgtaaagt tttaactcat ctttgtctaa aaatttagcc gcaatttctg gagtaaaact
     5281 taaatttgta gggcgtatag cttcatgagc ttcttgagcg cctttagtct ttgtagtata
     5341 tacatttgct ttgcttggaa gatagtcctt gccaaaattt gcttgtatga attttcttgc
     5401 attttctact gcttctttgg ctaaatttaa actatcggtt ctcatataag taataacccc
     5461 catcacgcct tcatgggtat ttactccttc atagagcttt tgagctatca tcatggtttt
     5521 tttagggtta aaaccaaggc gattgctggc actttgttgt aaagttgaag tcataaaagg
     5581 aggcggcgga gcgatttttc tttctttgct ttcaatgtca cttatactat aaacttcatt
     5641 tttacaagct tctagtataa gtttagcacg atctttgttg gtaatggtaa gtttttctat
     5701 cttggcttta tcaaactcaa ctagttctgc atctaaatct ttttgaaaaa tcatatcaat
     5761 actaaagtat tctaggggta caaaggcacg aatttctttt tcacgatcga ctatgatctt
     5821 taaagccgca ctttgaacac gcccagcact aagtcctctt tgaatttttt gtcctaataa
     5881 agggctgagc ttatacccta caatgcgatc taaaagacgt ctggtttgct gagcatttac
     5941 agagtgcatg tttaattttc ttggattttt taaagcattt tctatagcgc ttttagtgat
     6001 ttcatgaaaa acaatgcgtg gtaaggtgtt ttcatctttt cctatagctt ttgcaatatg
     6061 ataggctata gcctctcctt ctctatcttc atccgttgca agatagactt ctttggcatc
     6121 tttggctttg cttttaagtt ctttaactaa ggcgctatga tcacttgtga ttctatactc
     6181 agggataaat tcatcatctt ctattttaat cccaaagctt gatttaggca aatctctaat
     6241 atgtccttta gaagcgataa cttcataatc ttttcccaaa aaatttccta tggttttagc
     6301 ttttgcagga gattctacta tgattaaatt tttcttcatt ttgcaccctt gttaaataaa
     6361 aagctgaatt tagctaaaaa tatttaaaat tctacttata aaatatattt taatcaagct
     6421 aaaatatttt aaaaacaaaa ctatcataac aaaataaata aaatataatt ttaagtaatt
     6481 ttaaatacaa accataattt ttggagtata ataaaataaa aaaggtaaaa attatgaatg
     6541 acaaaactta taaatttcat ccaaatgaca caaaaatgga taaaaaaata attcaaatta
     6601 ctgaaaagtc cggatttaaa gcagctgtgt tttctatggc tgctatgact atgctaggaa
     6661 gcgtggtcat ttcatctgct ctgcctgcta tcaacagaca ttttgaagaa cttttaaccc
     6721 aaagtggcgt tactcttgct tcaagtttca cattagctca tcttgatata cttgttcgct
     6781 tagttttaac catccctgct atttttgttg tcattttatc tccatttgct ggtattttaa
     6841 tggataaatt tggcaaatta aaattcattc ttccagctat ggtggtttgg actatttctg
     6901 ggataagtgg ctttttctta aatgatattt atgctatact gacttcaaga gctatttttg
     6961 gtatggcaac tgcttttata atgacaggcg cttcggcttt gcttggggat tattatagtc
     7021 gtggtggctt taatcgcaga gaaaatgctt taagtcttca aggatttttt tgtgcggtag
     7081 ggggtgctgt ttttatttct attgcgggat ttgtttcaag ttattcttgg cgttatcctt
     7141 ttttggtata tggacttgga attttaatta ccttaatggc tatcatttat ctttttgaac
     7201 ctagaaaatt taaattctat aatcatacaa aaatagaaac aaaaacaaat tattggcaat
     7261 ttttccctat ctattttata ggttttttta tcatggtagt ttattatatt tcgccaactc
     7321 aacttcctta ctatatagaa gaacatttgg gattggatcc taaatatata ggtatttcga
     7381 tgtctgtatc tgcactatgt tatggttttt tctctctaag ctatagatat attataaaat
     7441 tcttaagtat taaaactatc tatgttttaa ctctttttat cgtatcttgt tcttttttgc
     7501 tgcttttttt agtagatagc tttttcacag ttttaatcgc cttagctttg cttggaatgg
     7561 gtggaggtat tatgcttgta aataatacgg cttatctttt ttcaatctgt cctgaaaatg
     7621 ctcgctctag ggcttatgga attttagcaa gttgtatatt tttaggacaa tttttaagtc
     7681 ctattatctc tcaacctatc gttagacaaa tgggtcttgt agatgctttt ttaatatggt
     7741 caatagtaat ttttatagtg tgcattgtgt ttttattttt aaagcaaaaa cctagaataa
     7801 attagcaaga aaaatcttgc taattttatt tattacaaac ctaccgcact taaagtttgg
     7861 tatttactca tataaatttg agcttcaatt tttctcatcg tatcaagtgc tacttgaact
     7921 acaataagta cagaagtgcc gccaaaatga aaaggcacac ccataaattt caccaaaacc
     7981 caaggtaagg ttgcaacaag ccctaaataa atagaacctg ataaagttaa acgagaagcc
     8041 acttcgttaa gataacttga agttccttca cctggacgaa ttccagggat aaaaccgcct
     8101 tgttttttca aattttctgc tatgtcttta gcgttaaata cgatagaagc ataaaaataa
     8161 gcaaagaaaa ttacaaacaa gaaagttaga acatgaaaca aataaccatt tggatttaaa
     8221 aagtcattaa tggcttgtag ataaggattt gtactagttt gtaaaattgt tgttggaaac
     8281 atcaaaatcg cactagcaaa aatcggtgga ataaccccac taagattgag tttaatagga
     8341 atataattca taatgcgttt gttttgattt tgcattacaa ctttacgaga ataagaaata
     8401 ggaattcttc tttctccaag ttctatataa ataatcaccc ctatggtgat taaaatcaaa
     8461 gcaaaaattg caaaagcggt taagaaattc atctcgcctg aattgatttg tcctacagtt
     8521 cctgaaatcg ctcttggaat acctgaaaca atacctgcaa aaatgattaa agaaatacca
     8581 tttcctatac ctctttgtgt gatttgttcg ccaagccaca ttaaaagcat agttccagca
     8641 agcatagaaa tagcacaaag tgcgataaac atatttaaat cttccaccat tatagcccct
     8701 gcaccaccac gaccgtgcaa gctttgcaaa cctatagcaa cgcctatact ttgaaccaaa
     8761 gtaatcacaa tagtcgcata acggataatt tgcatatatt tttgcatact atcacgctct
     8821 tttttcatct taccaatatt tggaaaagtt gctgcaagaa gctccataat aatagaagca
     8881 gtaatataag gcataatacc taaagaaatg atagaaaagc gttcagccgc tccaccacta
     8941 aaaacattaa ataaacccaa agcattgttt tgattgttat taaaaaattc cgcaatcaca
     9001 tcagcattga cgccaggaac tggcacataa gccagaaccc tataagcaaa taaaaatgct
     9061 aaggtgatta aaatcttatt cgtcaatgct ctattcatta ttttgatccg gtgacgctaa
     9121 tattctcgtc tttgattttt gatactaagt cttttgcact tgcaccaatt aatttgattt
     9181 tattcacaga ttttgaaatt ttgtgaacac ttttaatgct ctcaaatgta atttcactaa
     9241 gctcttttac agctgtgatt ttttcaacat tgatcacata aggtttttga attttagaag
     9301 taaaacctac ttttggtagt cttctttgaa gtggttgttg acccccttca aaacctcttt
     9361 tttcattata accttttcta gcagtttgac ctttaccccc tttagtagca gtcttaccca
     9421 tgccagaacc ttgaccacgg ccaattcttt tagttttatg cgttgaaccc gctgcttttg
     9481 ttaaattcat cttcttatcc ttttaacatt gttaaagctt tgattgtagc acgaaccaca
     9541 ttagctgaat tatttgaacc caaagacttg gttaagatgt ctttaatacc tgcaagttcc
     9601 acgatagggc gtgtagaacc acctgcgata actcctgtac cttcgctagc tggtttaagt
     9661 aaaattctac ttgcgttgta tttcacctct acatcgtgag cgatagttga gcctttagtt
     9721 ttaacttcaa cgatattttt aaacgcatcg tcaacagctt tacggatggc atctggaact
     9781 tccttagcct taccataacc aacacctact aaacctttgc ggtttccaac gataactaaa
     9841 gcagtaaatc taaatcttct accaccttta acaaccttag taactctgcc gatatcgacg
     9901 attacttctt caaattcttc tctattatat ttttccatcg atttacccct tatagcctaa
     9961 tgccattttc tcttaaagat tcagccaatg ctgcgataac accatgatat acataaccat
    10021 ttctatcaaa aacagcttgt tctatctttt tagcttttaa agttttagca aattcagcag
    10081 cgattttttt agcaccttct ttatttgctt taacgccaag tttgcgtcca tcaactgctg
    10141 ctaaagttac agcttttaca tcatcaatcg cttggatata tagagttctg tttgatttaa
    10201 atacagaaat tcttggaaaa ttttcacaac ctgaaatttt cgctctaatt cttttttttc
    10261 ttttgattct taaagttagt tttcttttta atacatttgc tctcatattc tacccttact
    10321 tcttagatgt cttaccagct ttgcggataa tgcgttcatc agaatactta acgccttttc
    10381 ctttatatgg ctctggtggt ctaaattcac gaatttgagc agcaacttga cctacaactt
    10441 gtttatcact tcctttaact gcaatagtat ttttatccac tacaatttca attccttctg
    10501 gaatatcata attaatagga tgagaaaaac caaggcttag ttctaaaact ttacctttta
    10561 aagctgcctt ataaccaact ccattgattt caagagtttt tgaaaaacct tgagttaaac
    10621 ctacaacgat attgtaagct aaagctctgt aagttcccca ataagctcta ctttgtctgt
    10681 cttcaccttt tggagaaaaa agaatattat tatctttaat ctcaacattt acatttgctt
    10741 tagtatcaag ttcttttgcc aaatttcctt ttttaaattt aagcaaattt ccttctaatt
    10801 ttacttctac tcctgctgga atagcaatcg gttgtttacc tatacgagac atatttttcc
    10861 tttttatttg tctaggatat ttctactttt ttaaaagaat ggatacccaa tgccataaaa
    10921 agcagatttt ttaccaaatg gtacataaaa tttcgccgcc aacacctgct ttataagctt
    10981 catcattagc taaaacacca tgacttgtgc taactacgat agtaccataa ccatttttaa
    11041 aacgcttgat ttcatcttta cctttataaa cacgacgacc aggcttagaa attcttttaa
    11101 gctcattgat aacactctta cctttttcat cgtattttaa aactacattg ataaatttct
    11161 ttttatcttc ttcaataaca ttaaaactct caatatagcc tttagcttga aaaattccaa
    11221 ctaaagcttc tacaacttta gaatgtaaaa gcttggttgt ttcaagcttt ctcattcctg
    11281 catttctgat acgagtgagt gaatctgaaa taatatcatt tatcatattt tatccttacc
    11341 aacttgcttt cttaagacct ggaatcaaac cttcattgcc catttttctt aagcaaactc
    11401 tgcaaattcc aaaatctcta taaaccgaat gcggacgccc acaaatttgg catcttgtat
    11461 aagctctaac cttaaattta ggcttgcgtg ccgcttttgc aatcattgat tttttagcca
    11521 tcttactttc cttttgtaaa tggcacaccg ataagttcta ataacttttg tgcctgtttg
    11581 tcattttgtg ctgttgtaac tatagaaatg ttcataccat gagttcttaa aattttatca
    11641 tactccactt ctgggaacat caactgctca tcaagaccga agttatagtt tccgcgtcca
    11701 tcaaaaccat ctctacttaa acctctaaag tctttcaccc ttggcaaagc aatagaaatt
    11761 aatttatcaa gaaaagcata catattttct tttcttaaag ttaccattac acctacagga
    11821 aaaccttcgc gaactttaaa tcctgcaact gattttttag ctttagtaat cacagccttt
    11881 tgtcctgcaa ttaaagaaat agtatctgca acattttgca atactttttg atctttagcc
    11941 aactcaccag cacctacgct gataactact ttttcgatca cagggataag cataggattt
    12001 ttaatatcaa attctttaac caatgcaggt ttaatgcttt gattatattt ttcttttaat
    12061 ctcatcatcg cttactcctg aacttttgcc acattggaaa tatccattgg catttcttta
    12121 ttgataaaac caccatttgg gtttttctca ctcggcttaa tagctttttt agcgatttta
    12181 catccttcaa ctaccacttt aagtgttttt ggatataccg ctaaaacttt acctgtttta
    12241 cctttatcat cacctgtgat aaccttaacg ctatcacctt ttttgatttt taatttaacc
    12301 gccattataa tacctccggt gctagtgaaa cgattttcat aaagccacca tatctaactt
    12361 ctctgcccac tggcccaaag atacgagttc cgataggctc tcttttgttg tcaagaataa
    12421 ccgcagcatt ttcatcaaaa cgaatcaaag aaccattatc tctatgaatt tcttttttag
    12481 ttctaacgat aaccgctttt accacttgac cttttttaac ttttccattt ggtaaagctt
    12541 ttttaacaga tgcaacgatt acatcaccta cggtagcgta tcttcttttg ctacccccta
    12601 aaaccttgat acacattaat tcttttgcac cgctattatc agcaactgca agtcttgtaa
    12661 aactttgaat cattactcaa ctcctgtagc taatacagat tttaagcgaa atgattttct
    12721 ttttgaaagt ggtctgcatt ctactgcaac aacagtatca cccactttaa cttcatttct
    12781 ctcatcatga attagatatt ttttaaagcg tttaacaatt tttctatatc ttggatgaac
    12841 cacttttctt tcaaccaaaa cacttgcggt tttttcacca gcgattttaa caacaacgcc
    12901 ttgaatttct cttttaaatg ccattttcta tccttatctt aaagcgttaa ttgctgtatt
    12961 tattctagca atgtcttttt ttacttggct aatctctttt ggattagtaa gttgcattgt
    13021 ttttagcttt tgttttaaag tgaataaaag cacctttttt tcttttagca ttgttgcaag
    13081 ctcagctgct gttttatctt taatctcagt atatttcatt ttggctctct cttgtaacaa
    13141 acttagtttt aaatggaagt ttatgcatag ctaaagtcaa tgcttctctt gccatttctt
    13201 cgcttactcc tgccatttca taaataatac gacctggctt gatattcatt acccattcct
    13261 caacagcacc tttaccttta cccatacgag tttctaaagg tttttttgtc aaaggcttat
    13321 ctggaaaaac tctaatccaa gtttttcctt gtcttttaac aaaacgagtt aaagcgatac
    13381 gcgctgcttc gatttggcgt gagttaatgc gtcctgcttc agttgctttt aatgcaaatt
    13441 caccaaaagt aaattctgtt ccacgattag cataacctct gttacgccct ttcatcattt
    13501 tgcgatattt agttcttttt ggcattaaca tgattattta ccccttcttg tgcgtcttgg
    13561 ctttttagct ggagcacttt cttcagtttt ttcaggttgc atacctttgt gcaatacttc
    13621 acctttaaag atccatactt taactcctat gtttccataa gtagttctag cttctgcaaa
    13681 accataatcg atttttgctc ttaaagtatg aagtggaacg cgtccttcaa gataccattc
    13741 tgttcttgcc atttcagcac cgcctaaacg accggaaact gaaactttaa ttcctttagc
    13801 acctgctttt tgcgcacctt ggattacttt tttcattgct cttctaaaag caattctttt
    13861 ttcaagttga gttgcaacac tttcagcagc aagttgagct gaagctcctg cttttctttc
    13921 ttctttgata ttgatattta catctttacc gattaaatct tgcaattctt ttcttaaatt
    13981 atcaacatca ctaccttttt taccgatgat gatacctggt cttgcagcaa ctacagtaac
    14041 gcgaagtttt ttagcagttc tttctactaa aatttgactg attcctgcgt aataaagttt
    14101 tctttttaag aaagctctga ttttgtaatc ttcaccgata ttttctacta aatttgcttt
    14161 agtcggaaac catcttgatt cccaatttct attgattcct agtcttagac caattggatt
    14221 aactttttgt cccattagct ttcctttttc actgttgctt ttttagtgct tgctgttttt
    14281 ttagctggag cttttgttgt agtagttttt ttagctactg tttttttctc ttcagatttc
    14341 acttccgctt ttgccacttc tactaaaata tgtgaagttg gttttctaat acgacttgca
    14401 cttcctctag ctcttggtct aaatcttttt aataccgcag ctgcgtcaac acgacaactt
    14461 tttacaatca cttcgtttgc ttcaaagcca ccatttgcta ctgcgcttga aattgcgttt
    14521 gcaatgtatt ttgcaccttt atttggcata aattttaaac tagccatagc taattctgca
    14581 ttcatcccct gaacttctct agcaatcaat cttgctttag ttggagataa tcttatgaat
    14641 ttaattaatg ctttactcat atcttatccc ttacttacca attttctttt gcacagagcc
    14701 tttatgccct ttaaatgtgc gtgttggagc aaattcacca agtttataac cgatgtgatt
    14761 ttcagtaata taaaccggaa tgaagctttt gccattatga acattaaatg taagtcctat
    14821 catatcagga gtaattgtgc ttcttcttga ccaagtttta attggtttat tatcattagc
    14881 ctttttagca gcgatgactt ttttcattac atgatcatca acaaaaggac ctttttttag
    14941 tgatctagcc atcttacttt ccttttcttc ttgaaattat tagcttatcg ctagcctttt
    15001 tacgacgagt tttcgcacct ttggttggtt taccccacgg agttactgga tgacggcctg
    15061 aatttttctt accttcaccc ccaccgtgcg ggtgatctac tgggttcatt gcagaaccac
    15121 gagtttgcgg gcggatacct ctatggcgat ttctacctgc tttaccgata gttacattag
    15181 cccattcttc atttccaact tcgccgatac ttgccataca ttcagctaaa acttgtctca
    15241 tttcgccact tgcaagtctt aaaataacat atttttcttc tttacccata agttgtgcat
    15301 aagcacccgc agaacgaatc atttgaccgc ctttacctgg ttttaactca acattatgaa
    15361 caatagtacc cacaggaatg tttttaagtt tcattgcatt acctggttta atatcaagtc
    15421 cgctttcagc agctgcaacg atatcaccaa cgcttaatcc acgtggttga agaatatatc
    15481 ttttttcccc atctttataa gcaatcaaag caattctaca atttctgtat ggatcatact
    15541 cgattgcttc tactttgcct tctataccga atttacgacg tttaaaatca ataattctgt
    15601 aaagtttttt agcacccgct tctttatgac gacttgtaat tcttccatag ctgttacgac
    15661 ccgcgtgtgc tggaagttta acaagtagtg agcgtacact tggtttagct gtaatatctt
    15721 cagaacttaa acctgtgata tatcttctac ttggagtata tggtttataa gttttaattg
    15781 ccatcttaag cctccgtatt ttctaagcta acaccttcag gtagcttaac atagaatttt
    15841 ttgtaattgt ttctttgacc taaacgacct ctaaaacgct taatttttcc atccattctt
    15901 aaggaattga tgctttttgg agttacacca aaatactctt ttaaaaccgc ttttaagcct
    15961 gttttagtca tttttggcga agtttgaata actacgacac cttgctcttg caaattcaaa
    16021 cttttttctg tgtaaagtat agtctttata tcagtaatat ctgccataat tatccctctt
    16081 ttgtaataga ttctaacact gatttttcca taataacagc attaaataca gatactaaat
    16141 aagcatttac ttcagttaca tcaactacat agcaatttgc taaatttctg taagctaaaa
    16201 gtgttttttc atctagtaaa tctttaacga ttaaagcatc tttgacgcca agttttttaa
    16261 tcacagcgtt tgcatctttt gttttaccac tttcaatagc caaagaatca gcagtaaata
    16321 acacaccttt agctgcttta tctgctaaag ctctttcaag cgccaatctt ttttgttttt
    16381 tatttacttt ttggaagtag tttctttcat ttgttggacc aaaagcaacc gcaccgccta
    16441 cccaaacgtt agttcttgtt gaacccgctc tagcaccgcc acgacctttt tgtctccaag
    16501 gttttttacc accaccactt acatcacttc tacctttagt atgagctgta tttgctctta
    16561 aacttgcaag gtaagatttt acatacaagt aaagattgtg tggatttact tccgcatatt
    16621 ttgaaggtaa atcaagttca cctgcttttt ctaatttatc atttaaaaca actactttac
    16681 tcattttgca atccttattt tacccatggc accattataa cctggtactg cacctttaac
    16741 tactaaaatt ttattttcag catcataaga tacaacttcg tttttaatgg tcactttagt
    16801 atttccatag tgtcctgcca ttttcatacc tggttgaaca cgacctggcc attctctatt
    16861 accaatagat ccatggcgtc tatgaaatct cgaaccgtga cttgctggac cccctgcgaa
    16921 gttatgtctt ttcataacac cgctataacc tctaccttta gtgttaaagc ttacttttaa
    16981 aatttttgct tcatttaatg gagtttcatc taaatctcct gcttcagtat ttgctacttc
    17041 taaagtcgca aatctattgt attctgcaga aagattgtat tttttttgtt gtcctgcgac
    17101 acatttatta cttgctttac cttttggata tgctactaaa gcctttccgc cttcaacttc
    17161 acatactttt gcatttacaa ctcttagtaa agttacagcg atacttggat tagtaattgt
    17221 tctgctcatt ccaatttttt ctacaatata ttccatatct tatccttact tacccatagc
    17281 tcttacttca acgcttactt ctggcgctaa atcaagcttc gttaaagaat caactgtatc
    17341 tggagtcgct gctactatat ctagcatacg cgcgtgaatt cttatttcaa actgctcacg
    17401 agaatctttg ttaatgtgtg gagattttaa aactgtatag cgtttgattt tagtaggcat
    17461 tggtatcgga cctctaatat ccgcacctgt tcttttaaca gcttctacga ttgctgcaac
    17521 tgttctgtct agtactcgat ggtcataagc ttttagctta agcctaattc tttccataat
    17581 atttccttta aaaagaactc gttagttaaa aactaaccaa tttataaaaa ttgaaatgag
    17641 agtatataaa atcttgtttt caaagtcaag gaatttgatg aaatttttct attattttcc
    17701 ttttaaaaag gataaaaata gaatttttag aatttaaaaa ttatcattat tttttaaatt
    17761 tttgtatata atggtcaata tcttatttca ttaaatttta aaaaatctct taatttttca
    17821 tattcgccat tttctaaata acgatgtttt cccgccttca acataccaag atctaaagcc
    17881 ccaaaagcaa cacgcttaag atccatgact tcaagatcaa aatgtccaaa aaagcgtcta
    17941 agctctctat ttttaccttc atttataacc actctaagct tagtatagcc tccacttgat
    18001 ccaaaaattt caaagtctat aaaaggagca aaactcatag aggtaatttt agtttttgca
    18061 tgtgcgcctt ttttttcatt tttaatctca agtccatttt gcatggcttc gatgacttgt
    18121 ttgctcaccg tgcctttaac tttaaggtag tattctcttt ctaaatcgct atgcattaaa
    18181 gcatcggcaa tcacaggaga atctgtaagc aaaagtaagc cttcacttgc ataatccagc
    18241 ctacctacgc taagccaagt actaaattgt cttggcaagg tatcatatat agtttttctt
    18301 ccacgatcgt cttttttact gacaatttca cctttttgtt tatggtagat tatcacgcta
    18361 aattgcgttc ttttttgtac tcttttacct ttaacaaaaa ctttatcatc aaatttaact
    18421 tcatcgctta aaagggcaat tttgttgttt atttttacta agccttgttt gataagttca
    18481 tcggcttcac ggcgtgaata gcgggtgtta tgggatataa atttattaat tctcatttga
    18541 tcttccttaa aaagggcgtt tttgcccttt tttacattac aaaaatagtt ggaactatgg
    18601 ttgggtattt tttaatcttt ctaaagatgt gttttcttaa aacttggcgg atttgatttt
    18661 ctaaaaatct tggatcattg agtacttcat ctttaacatt gatgaaaaat tgtcctaaaa
    18721 cttcagccat atctttgcta aaagcatgat cgtgtttgtc agctactagc ccatagctaa
    18781 atactcttgg tttgttgatc agtgtttttg tagctttgtc aatttgtgcg ataataacta
    18841 ctataccact atctgcaagt ttttggcgat ctataactac atcatcggcg atttgtttgt
    18901 tgatttgatt atctacaaaa actttacctg tttttacggt ttttatgcgt ttgacatatt
    18961 tttggcaaag ttctacttga tcgccatcac tcataagata aatatttctt tcagggatac
    19021 cgcacttcat cgctgtttct ttgtgtttgg tgatgtgatt gtattctcca tgaactggta
    19081 ggaaaaattt aggcttagta agggttagca taagcttttg ctcttctata ctagcgtgtc
    19141 cgcttacatg aatttcacta aattcttgat acgctacttt agctcctgct tttaaaagat
    19201 agtcaagcac cgcagaaaca cttgcttcat ttcctggtat ggctttagct gaaataatca
    19261 cttgatctgt aggtttgatt tttataaatt tatgctcatc agttgccatt ctataaagcg
    19321 cactcatggt ttcgccttga cttcctgtag ttacgataag cacttcattg tctttatatt
    19381 tgcttacttc atcagcatcg atgaaaattt ttctatcaag tttgatgtag cctaattcca
    19441 tagtggtata aagatttctt tccatagaac gaccgatcac acaaactttt ctaccgtatt
    19501 ttaaaccata agtgatagct tgataaacgc ggtggatatt agaactaaaa gtactcatga
    19561 tcaccctgcc tttggtacgt gcaaagattt gatcaaaagt tggccctacg gagctttcac
    19621 tttttgtata accttctttg tacgaatttg tactatcgct taaaagacat aaaacccctt
    19681 cttctccata atgtgccaaa cgtcctaagt ctgttggata gccatcgatt ggagtttgat
    19741 caattttaaa atcacctgtg tggataatcg ttcctgcttt tgttttgatc gcaagcgctg
    19801 aagcatcaat gatagaatgc gtgatgtgga tccactctat atcaaattcg cctatctcat
    19861 aaacacggcg tttttctaca gggcgaaacc atttgcgttc tgcttttaag ccatgttctt
    19921 caaatttgtt tgaaatcatt cctaaagcca aaggtgtagc gtagatagga aattggaatt
    19981 ctttaaagaa ataaggcact gcaccgatat gatcttcgtg tgcatgagtg atcactatac
    20041 cacgaatttt atctttaatt tttcttacat agtcaaaatc agggatgata atatctaccc
    20101 catgcatagt tccatcagga aaactcatac ctatatctac tataattgca tctttattgg
    20161 tttcaaaaac actgatattt ccaccaattt ctcctaaacc tcctaaagga gtgatgcgga
    20221 ttttatgctc gctagaatta ttatatttta aagggtgtaa gcggttttca tgtgaaatac
    20281 ggttagcttc tatgcattct gcaagagcga tttgccaatc ttcattacct gtgagttttg
    20341 aaggaagatt gcgatttttc ttcttttttt tctcagtttt attttctgag ttttcagaat
    20401 tttccttgtt ggaattttga tcaatttttg gagtatcatt ttcattttgc aaagaatcag
    20461 ctaatttttt tctacgattt ttatatttat agcgtttatt gttttttgaa tttgagttcg
    20521 gattttgttc gtttttattt atctctttgt tttcgtccat attcatcctt taatttgtca
    20581 taaattttaa ggtataaatc aacgcaaatt tcatgtggtc tgatgttttc ttttaagcca
    20641 agagtgctta aaacttctaa aacttttgct ttatatgttt ttaaatttcc taagagttgt
    20701 tttctaggag ctttaaaaca atcttttaga aaatttttga aattttctat ttcgcaaagt
    20761 tcatcaaaat ccttagtttt aatcaaactc atcaccgctg acataacttt tggtggagga
    20821 ttaaaacatt gtggatcaac atcaaaaagt atttttcttt cgcaaatcat tgcacttaaa
    20881 acacctaagg aagaaaactc actatttcct tctttagcgc agaatttttc agccatttcc
    20941 ctttgtgcca ttacaataag ccctagacaa tttttatctt ctaaagcttt taatataatg
    21001 tgacttgcaa cataataagg caaatttgca accaaaaaat atggtttttc atcaagacta
    21061 ggattaaaag cttcgcttgc gtcttgatgg atcaagttaa attttccaca ttcaagttct
    21121 ttttgaaatt tcttttttaa aataggtatg agatcattat cgatttcata agcttttact
    21181 tgagaaattt ttaaaagttc ttgcgttaaa tcacctaagc caggcccaat ctcaatgata
    21241 ttgttcatct ctttgggtat ggcttggatg atttttgcta atacgctttt atcgattaaa
    21301 aaattttgtc cgtattgttt ttttgcttta accataagaa ataattttat ctaaaaattc
    21361 ttaattaagt ctttttaggt agaattattt tttgtaaaat ttcataagga tcaaaatgat
    21421 tatttgtgcg ggtggaaatg aaaatttttc ttttgcaaaa gctataggca taggtttggt
    21481 tgaatcagct tttcatttga gtcaactttg cttcaaagaa aaaccatcaa aacttatatt
    21541 tataggaact tgtgggcttt atgataaagg agagatttta gaaatttata gaagttcgca
    21601 cgcttttaat gtagaatttt ctaaaatttc acatgcattt tatactcctg caaaatatga
    21661 aatttgctta gaaaaagaaa atgtttctcg tgaaacaata aaaatcaatt cttcaaatta
    21721 tatttgtcaa aattcaaaag cggcaaaaga attttcaaaa ttaggttttt ttgcagaaaa
    21781 tatggaagcc ttttctgttt tgagcgtagc taaaaattta aatattgatg cagagtgtat
    21841 tttgtgtgca acaaattttt gtaatgaaaa cgctcacgaa gattttataa aaaatcatca
    21901 aaaggcaaaa gaaaacttag aagaatactt aaaaaaatat cattat
//
LOCUS       DARBBO010000018        21904 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.018, whole genome shotgun sequence.
ACCESSION   DARBBO010000018 DARBBO010000000
VERSION     DARBBO010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 21904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21904
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.018"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            18..869
                     /locus_tag="SB854_000543"
     CDS             18..869
                     /locus_tag="SB854_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaN family lipoprotein"
                     /protein_id="HEG0956577.1"
                     /translation="MKFYTILSILFISFMLSACAVLQKSSPLQENKDFYILDTHTQKK
                     ISFEDMILELLKADVILLGEKHDEVKHKISQVMIFNALEGNLSSQNINFDVALEMLAS
                     TEQNHLDKAFKNKKTIKANELTNALNWDKVWKWKDYEQFVNVVFYSKSKILGANLSRS
                     EITSIYNGAQPLKGYVSTTNEVKKQLFDIISLSHKLNPEENKELLDKLVEIQQFKDRR
                     MADVLVHHVNKVLLLAGSYHTSKKIGIPLHIQDFKSSKKIVVVNLSYGEIDLKDSDYV
                     LIYKGEE"
     gene            866..3133
                     /locus_tag="SB854_000544"
     CDS             866..3133
                     /locus_tag="SB854_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG0956578.1"
                     /translation="MKKLSLFCAVGLCFASFAFSEELEFDSLEISGSKIKNDEKPFVT
                     PGATSTREGIGSDTQSIDSIVRSIPGTYTNTDQAQGTVQVNIRGMSGFGRVNTMIDGV
                     TQTFYGSASDDPARFHSQTGTSAFGAVIDTNFLIGVDVTRGTFEGVGGANALMGSANF
                     KTIGINDIVHDGNIFGFLGRFSYGSNGIGPSYMSAVAGKTELENNGYVGALFGYSAKR
                     ITQNYTVGGGGKIGSSMVDTDGDGIADTNIAPFDPDFLTQKPNSQLFKLEYVPNSFTN
                     TIFSYRRYQNELAGRKIHNDNYQLDFWHNPNEWLNVNTLIAYNQGIQTYGSKSTFAAN
                     DAIANTKAKNTATTFDISDTLEGEWHRFNLNTRFGANILLNDYKNTLNTSIQGVNSIP
                     FQPRGKQNLFTYYLDNSLNYGIFTLDTNVNLLDWNIKGHRPACDEVNFMCFPKAATDI
                     DKNGLRLNASVMLSAAIHELFTPFVSFARTNRAPNVQEMFFSNNEGNGINSFLKPEQA
                     NTWQIGFNSFKHGLLKDDDRFGFKAVYYHTKIKDYIYNEQFYLEDPSKDPPSSQFYMH
                     LNSADDTIFKGVELELSYDLGFAYAKAMYSRQDTSSTISQTSGPLLGSFSASKIMELP
                     KDYANVELGFRLNDKISFGGIAKYTGKAKRVNPNTDDWNKDPNNPYYPKPTTQDLPKI
                     PIIVDLYWNIEWFKNLTMRAEVQNLFDKNYMDALNAYNSLDNQLQYNGAGDPIYLFSN
                     SARGRTFIVSFEYKY"
     gene            3145..3906
                     /locus_tag="SB854_000545"
     CDS             3145..3906
                     /locus_tag="SB854_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HEG0956579.1"
                     /translation="MLKKCFYFVFLLLNLNAEANATDTNLSFDSSKIETEAPKIELSL
                     SSLYQNADEVVKGVIYILVLFSILAWAVFISKLMQFYFMKKNLDLSIQKIKELKNLNE
                     LDQTKDFAGVLSLEIQDELEKSEYKNDHIKERIELRLQNTISKQITASKNGLSLLASI
                     GASAPFIGLFGTVWGIMNAFIGIANLGNASLAVVAPGIAEALFATAFGLIAAIPAVLF
                     YNYLTRKNLKLMHHLDELANFVYILFHRSYFNDKN"
     gene            3893..4303
                     /locus_tag="SB854_000546"
     CDS             3893..4303
                     /locus_tag="SB854_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biopolymer transporter ExbD"
                     /protein_id="HEG0956580.1"
                     /translation="MIKTEMAHKEEELSEINITPFIDIMLVLLIVFMAVTPLITSSIK
                     IELPKSSQQAEDKLKNPIILYLNTDNTLAINDDKLSLENLSSALDIKTKGNKEEIIYF
                     HIDKSVKYEDIMQVMQKLKENGYGKIALSSKKMD"
     gene            4305..5051
                     /locus_tag="SB854_000547"
     CDS             4305..5051
                     /locus_tag="SB854_000547"
                     /inference="COORDINATES: protein motif:HMM:TIGR01352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG0956581.1"
                     /translation="MKSSVIFGFVLSLILHTLVLMFFLFSFYTQEKSSGVDFKQGAEF
                     TSIMMVSEFPIGELKEVSIDQKKSNSQDKNKKQDERISFNSQDKNAVLKVQKKIEKQD
                     ENQAQKEIANASENSKFKNESLSAPLQSNEDKTQTIVSGNAKEQVKSYQALLMAHLTK
                     FKKYPQEAIMQKQEGVVRIRVSIDESGNVLSKELKKSCPYAALNDEALSLFKRASPLP
                     KPPKEMLKNGDKISFVMPIDYNIKDYLGKK"
     gene            5097..6302
                     /locus_tag="SB854_000548"
     CDS             5097..6302
                     /locus_tag="SB854_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HEG0956582.1"
                     /translation="MIMFSSFFKSKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSD
                     FYNVLQKPKIELLDSNSTQKIEENLENNATLIQEANQRAEQNFQKANFINKGALYYYQ
                     NLLEYFFNSRAMIEKPNYSASDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREA
                     MTFSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSL
                     SDVVSKALFANLSENSFFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQ
                     KAEAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMI
                     VIVPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSIFITNWTTITQLRSIYKRLKE
                     FEKNISYKS"
     gene            6401..7759
                     /locus_tag="SB854_000549"
     CDS             6401..7759
                     /locus_tag="SB854_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEG0956583.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSILMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTMAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWMLFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELNHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(7772..8956)
                     /locus_tag="SB854_000550"
     CDS             complement(7772..8956)
                     /locus_tag="SB854_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEG0956584.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGGVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFSIINAYNETLKIYKDLAKQYRYKIYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSRDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDDGGYLRVVTLDEKGFECIEIKNQIYK
                     KK"
     gene            complement(8966..9175)
                     /locus_tag="SB854_000551"
     CDS             complement(8966..9175)
                     /locus_tag="SB854_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEG0956585.1"
                     /translation="MAKDANGIELNTGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            complement(9168..9887)
                     /locus_tag="SB854_000552"
     CDS             complement(9168..9887)
                     /locus_tag="SB854_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEG0956586.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVAIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            complement(9959..10525)
                     /gene="purN"
                     /locus_tag="SB854_000553"
     CDS             complement(9959..10525)
                     /gene="purN"
                     /locus_tag="SB854_000553"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEG0956587.1"
                     /translation="MLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEVVLCICNKKD
                     AFGVQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            complement(10516..11886)
                     /locus_tag="SB854_000554"
     CDS             complement(10516..11886)
                     /locus_tag="SB854_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HEG0956588.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKILFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIIDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITFCMGALKEILLEDFAKEFVGRIKIANLGIRSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDVVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIVQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            complement(11870..12568)
                     /locus_tag="SB854_000555"
     CDS             complement(11870..12568)
                     /locus_tag="SB854_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEG0956589.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            complement(12570..14075)
                     /locus_tag="SB854_000556"
     CDS             complement(12570..14075)
                     /locus_tag="SB854_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HEG0956590.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASTAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFANPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFSKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNISKTHILEALSFRARN"
     gene            complement(14072..14599)
                     /locus_tag="SB854_000557"
     CDS             complement(14072..14599)
                     /locus_tag="SB854_000557"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEG0956591.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFDENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            complement(14635..15219)
                     /gene="clpP"
                     /locus_tag="SB854_000558"
     CDS             complement(14635..15219)
                     /gene="clpP"
                     /locus_tag="SB854_000558"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEG0956592.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSAQEAKEYGLIDKVLEKSFK"
     gene            complement(15219..16562)
                     /locus_tag="SB854_000559"
     CDS             complement(15219..16562)
                     /locus_tag="SB854_000559"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEG0956593.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKENKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLEGYEKLIPEYQTPKVSKKEIDEKKDELLKRFATPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLAGKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFIPKTEKTEKSEKVSKKEKEDK"
     gene            16706..17278
                     /gene="folE"
                     /locus_tag="SB854_000560"
     CDS             16706..17278
                     /gene="folE"
                     /locus_tag="SB854_000560"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEG0956594.1"
                     /translation="MQKKFEDCVKTMLEIIGENPNREGLIKTPNRVFKAYEFLTSGYT
                     QNVKEILNDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKI
                     PRLVEVFARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGVQKANSTTT
                     TSALRGIFLKNEKTREEFFSLINSAKQVRF"
     gene            17278..18663
                     /gene="fliI"
                     /locus_tag="SB854_000561"
     CDS             17278..18663
                     /gene="fliI"
                     /locus_tag="SB854_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HEG0956595.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEATKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(18666..20003)
                     /locus_tag="SB854_000562"
     CDS             complement(18666..20003)
                     /locus_tag="SB854_000562"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEG0956596.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYVVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(20005..20733)
                     /locus_tag="SB854_000563"
     CDS             complement(20005..20733)
                     /locus_tag="SB854_000563"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEG0956597.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQARISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            complement(20796..>21904)
                     /locus_tag="SB854_000564"
     CDS             complement(20796..>21904)
                     /locus_tag="SB854_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEG0956598.1"
                     /translation="KKFTALQKLPHSIFFGTAGSGKTTFARVVAKEFGLDFYEFDGGN
                     FKLEELRKILDNYKNSLYKPLIFIDEIHRLSKTQQEMLLIPMENYRLILIGASTENPY
                     FVLSSGIRSRSMLFEFKSLGAKELETLLLRVQEKMKFSIDKEAKDFLLKSADARAMLN
                     LLEFVLVLDEKHISLENLKKLRNTINSEGVSSKDTHYILASAMIKSLRGSDVDAAIYY
                     LARLIDAGESADFIARRLVIFSSEDVGNADPNALNLAVSTLDAVKNIGYPEARIILAQ
                     CVVYLASTIKSNASYKAINEALNYVKNNEALEIPNYLNNNHQEKQNYLYPHDFGGWVE
                     QKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHKA"
BASE COUNT         7325 a         3514 c         3276 g         7789 t
ORIGIN      
        1 agaaagtaac aataataatg aaattttata ctattttaag cattctattt ataagcttta
       61 tgttgagcgc ttgtgctgtt ttgcaaaaat catctccact tcaagaaaat aaagattttt
      121 atatacttga tacgcatact caaaaaaaga tttcttttga agatatgatt ttagaattgc
      181 taaaagcaga tgtgatactg cttggcgaaa aacacgatga ggttaaacat aagataagtc
      241 aagttatgat ttttaatgcc ttagaaggaa atttaagttc tcaaaatata aactttgatg
      301 tagctttaga aatgttagca agcacagagc aaaatcactt agataaagct tttaaaaata
      361 aaaaaaccat taaagccaat gaacttacta atgcattaaa ttgggataag gtctggaaat
      421 ggaaagatta tgagcaattt gtcaatgtgg ttttttattc aaagtcaaaa atattaggtg
      481 caaatctttc acgctcagaa attacaagca tttataatgg ggctcagccc ttaaagggtt
      541 atgtttcaac cacaaatgaa gtaaaaaaac aactttttga cattatatcc ttaagccata
      601 agctaaatcc tgaagaaaat aaagaattac tagataaatt ggtggaaatt caacaattca
      661 aagacaggcg tatggctgat gtattggttc atcatgtaaa taaagtttta ttgctagctg
      721 gaagctatca tacaagtaaa aaaataggaa ttcctttaca tatacaagat tttaaaagca
      781 gtaaaaaaat agttgtagtg aatttaagct atggagaaat agatttaaaa gacagtgatt
      841 atgttttgat ttataagggg gaggaatgaa aaaattaagt ttattttgtg ctgtaggttt
      901 atgttttgct agttttgctt tttctgaaga attagaattt gatagtcttg aaatttcagg
      961 ttcaaaaatc aaaaacgatg aaaaaccttt tgtaactcct ggggcaacaa gcacaagaga
     1021 gggtataggt tcagatacac aaagtataga ttctatagtg cgtagtatac ctggaaccta
     1081 cacaaacaca gatcaagctc aaggcacagt tcaagtaaat attcgtggta tgagtggttt
     1141 tgggcgtgtt aataccatga ttgacggtgt tactcaaact ttttatggta gtgcatcaga
     1201 tgatccagct agatttcatt cacaaacggg aacttcagct tttggagctg ttattgatac
     1261 aaatttctta atcggagttg atgttacaag gggaactttt gaaggagtag gtggagcaaa
     1321 tgccttgatg ggatcagcaa attttaagac cataggtata aatgatattg tacatgatgg
     1381 caatatcttt ggatttttag gacgattttc ttatggaagc aatggaatcg gaccaagtta
     1441 tatgagtgca gtggctggaa agactgaact tgaaaataat ggatatgtgg gcgcgctttt
     1501 tggttatagc gcaaagagaa ttactcaaaa ttacactgta ggcgggggtg gcaagatagg
     1561 tagtagtatg gttgatactg atggagatgg tatagctgat accaatatcg ctccttttga
     1621 tccagatttt ttaacccaaa aaccaaactc tcaacttttt aaactcgaat atgtcccaaa
     1681 ttcttttaca aacactatat tttcttatcg tagatatcaa aacgaacttg ccggtagaaa
     1741 aatacacaat gacaattatc aacttgattt ttggcacaac cctaatgagt ggcttaatgt
     1801 aaatacgctt attgcctaca atcaaggcat acaaacctat ggatcaaaat ctacttttgc
     1861 ggcaaacgat gccatagcta acacaaaggc aaaaaatact gccactactt ttgatataag
     1921 tgatacttta gagggtgaat ggcatagatt taatctaaac acacgctttg gagcaaatat
     1981 tttgcttaat gattataaaa ataccttaaa tacatcaatt caaggagtaa attctatacc
     2041 ttttcagcct cgtggaaaac aaaatctttt tacttattat cttgataata gtctaaatta
     2101 tggtatcttt acacttgata ccaatgtgaa tcttttagat tggaatatca aaggacacag
     2161 acctgcttgc gatgaagtaa attttatgtg ttttccaaaa gcggcgacag atatagataa
     2221 aaatggactt cgcctgaatg cttctgtcat gctttcagct gccatacacg agctttttac
     2281 accctttgta agttttgcga gaacaaatag agcccctaat gtgcaagaaa tgtttttctc
     2341 aaataacgaa ggcaatggta tcaattcttt cttaaaacca gaacaagcca atacttggca
     2401 aataggtttt aattctttta aacatggact tttaaaagat gatgatcgct ttggttttaa
     2461 agccgtgtat tatcatacaa aaataaaaga ttatatttat aatgaacaat tttatcttga
     2521 agatccaagt aaagatcctc caagctcgca attttatatg cacttaaatt cagctgatga
     2581 taccatattt aagggtgtgg agttagaatt aagctatgac ttgggttttg cttatgctaa
     2641 agctatgtat tcaagacaag atacaagttc gactatttct caaacttcag gacctcttct
     2701 tggctctttt tcggcaagta aaatcatgga gcttccaaaa gattatgcaa atgtagagct
     2761 tggctttagg ttaaatgata aaataagctt tggtggtata gcaaaataca caggcaaagc
     2821 aaaaagggta aatccaaata cagatgattg gaataaggat ccaaacaatc cttattatcc
     2881 taaaccaacc acacaagact taccaaaaat tcctattata gtagatttat attggaatat
     2941 agaatggttt aaaaacctca caatgagagc agaggtgcaa aatttatttg ataaaaacta
     3001 catggatgcc ttaaatgctt ataattcctt agataatcag cttcaatata atggagcagg
     3061 tgatcctatc tatcttttta gcaattctgc tcgcggtcgt acttttatag taagttttga
     3121 atataaatat taaggaatat acaaatgtta aaaaaatgtt tttattttgt ttttttatta
     3181 ttaaatttaa atgcagaagc aaatgcaaca gatacaaatt tatcttttga ttcttctaag
     3241 atagaaaccg aagcacctaa aatagagctt tctctttcta gtctttatca aaatgctgat
     3301 gaggtggtaa aaggtgttat ttatatattg gttttatttt ccattttagc atgggcagtt
     3361 tttatttcta agcttatgca attttatttt atgaaaaaaa atctagactt gtctatacaa
     3421 aagataaaag aattaaaaaa tctcaatgaa ttagatcaga caaaagattt tgcaggtgtt
     3481 ttatctttag aaattcaaga tgagcttgaa aaaagtgaat ataaaaatga tcacataaaa
     3541 gagcgtatag aattgcgttt gcaaaatacc atctcaaagc aaatcacagc aagcaaaaat
     3601 ggcttgagtt tgcttgcgag cataggtgct agcgcacctt ttatagggct ttttggaaca
     3661 gtttggggaa ttatgaatgc atttataggt atagcaaatc ttggcaatgc ttctttggca
     3721 gtcgttgcgc ctggtatagc tgaagccttg tttgctacag cttttggctt gatagctgct
     3781 atccctgcgg tgctttttta taattatctt acaagaaaaa atttaaaact tatgcaccat
     3841 ttagatgagc ttgcaaattt tgtctatata ctttttcata ggagttattt taatgataaa
     3901 aactgaaatg gctcacaaag aagaggagtt aagtgagatc aatataactc cttttataga
     3961 tattatgctt gtattattga ttgtttttat ggctgttact cctcttatca caagttctat
     4021 caaaatagaa ttacccaaga gttcgcagca agcagaggat aagcttaaaa atcccatcat
     4081 actttattta aatactgata atactttggc tattaatgat gataaattaa gcctagaaaa
     4141 tctttcaagt gctttagata taaaaaccaa aggcaataaa gaagaaatta tttattttca
     4201 tatcgataaa agtgtaaagt atgaagatat tatgcaagta atgcaaaaat taaaagagaa
     4261 tggctatgga aaaatagctc tttcaagtaa aaagatggat tagtatgaag tctagtgtga
     4321 tttttgggtt tgtgttaagt ttgatattgc atactttagt attaatgttt ttcctttttt
     4381 ctttttatac tcaagaaaaa tcaagtggtg ttgattttaa acaaggagcg gaatttactt
     4441 ccattatgat ggtatcagag tttcctatcg gggaattaaa agaagtttcg attgatcaaa
     4501 aaaagagtaa ttctcaagat aaaaacaaaa aacaagacga aagaataagt tttaattctc
     4561 aagataaaaa tgctgtatta aaagttcaaa aaaagattga aaagcaagat gaaaaccaag
     4621 ctcaaaaaga aatagctaat gcaagtgaaa attcaaaatt taaaaatgaa tcgctcagtg
     4681 ctccgctaca aagtaatgaa gataaaacac aaactatagt aagtggcaat gccaaagaac
     4741 aagttaaaag ctatcaagct ttgcttatgg ctcatttgac taaatttaaa aaatatcctc
     4801 aagaagcgat aatgcaaaaa caagaaggcg ttgtaagaat tcgcgtaagc attgatgaaa
     4861 gcggaaatgt cttaagcaaa gagcttaaaa aatcttgccc ttatgcagcg ctcaatgatg
     4921 aagctttaag tttatttaaa agagcttctc cattgccaaa accgcctaaa gaaatgttaa
     4981 aaaatggtga taaaatcagt tttgttatgc ctattgatta caatattaaa gactatttag
     5041 gtaaaaaata aacttttcat taaaaaaagt ttattagaat ttttatttta aaggtgatga
     5101 ttatgttctc ttcgtttttt aaaagtaaaa aatgggcttt atgggcttat ttgggacttt
     5161 ttttactgtt atttttctta tatatacaaa caagcttaaa tgttgcgatc aattcatggt
     5221 atagtgattt ttacaatgtt ttacaaaagc caaaaataga acttttggat tctaattcta
     5281 cgcaaaaaat agaagaaaat cttgaaaata atgccacttt aatccaagag gctaatcaaa
     5341 gagctgagca aaatttccaa aaagctaatt ttatcaataa aggcgcattg tattattatc
     5401 aaaatttatt agaatatttt ttcaactcta gggctatgat tgaaaagcca aattattcag
     5461 caagtgattt ttatgctttg attttagttt ttttggctat tgctattcct tatgttttaa
     5521 tcgctacaat taatatctat tttgctagcg tctatgcttt taagtggcgt gaggctatga
     5581 ctttttctta tttaaaattt tggaaaaata aagatgataa tatagaagga agttcgcaaa
     5641 gaattcaaga agatacttat aatttttcta aaatcgtaga gagtttagga cttagtttta
     5701 taaaagcttt gatgaccctt gtagcattta ttccgatttt atggagttta agtgatgttg
     5761 tgagtaaagc tttatttgca aatttaagcg aaaattcttt tttttatttt ttaaaaaaca
     5821 ttgatggttt gcttgtttat attgcacttt tgatttcttt aggaggcttg gttgtgtcat
     5881 ggtttgtagg tattaagctt cctggacttg aatataacaa tcaaaaagct gaagcagctt
     5941 ttagaaaaga gcttgtttat gctgaggata atcgcaaaga atacgctaaa aatgagacta
     6001 tgatagagct ttttacaggg cttaaattta actataaaag acttttttta cattatggat
     6061 attttaatat ttggctcatt ttatttgagc aaatgatagt tatagtgcca tttttaatca
     6121 tggcaccagg gctttttgct ggagctatag gacttggtat tgtaatgcag attaataatg
     6181 catttgatca agtgcgaagc tcttttagta tttttatcac aaactggaca actatcactc
     6241 aacttagaag tatatataag cgtttaaaag aatttgagaa aaatatttct tataagtctt
     6301 agttttttct tataaaatac aagaaaaaat tcaaatatta aatttacttt taattgtgta
     6361 taataaggtt taataatatt ttatttctta aggagcttca ttggacccca gtcaggtttt
     6421 ggatttaaac caaacttcta cagcatcttt tgatgcagga tattctatac ttatggttgt
     6481 tgttgcactt gctctagtgt ttttaaatgg tttttttgtt ttgtctgaat ttagtattgt
     6541 taaagtacgt cgttccaagc ttgaagagat ggtaaaagaa aaaaaagcgg gtgccaagaa
     6601 agctttggag gttacttcaa gacttgatac ttatcttagt gcttgtcaat taggaatcac
     6661 tttaagttct ctagctcttg gttggatagg tgagcctgct attgcaaaaa tgctagaaat
     6721 tccgcttatt aatcttggtt ttagcactgt tattatccat actatggctt tcattattgc
     6781 ttttagcatt attactcttt tacatgtggt tttaggagaa cttgtgccaa aaagtatagc
     6841 tattgcagtt gcagataaag cggttttatt tatagctaga cctcttcatt ggttttggat
     6901 gctctttttg ccttgtatta aaattttcga ttttttagca gctataagtt tgaaactttt
     6961 tggaataaaa cctgctaaag aaagcgagct aactcatagc gaagaagaaa ttaaaatcat
     7021 agcaagtgag agtcaaaaag gtggagtttt agatgaattt gaaacagaga tcatacgcaa
     7081 tgctgttgat ttttcagata ctgttgctaa agagattatg actcctagaa aagatatgat
     7141 ttgtctaaat aaacaaaaaa gttacgaaga aaatatgcaa atcatttgtg agcataaaca
     7201 tactcgcttt ccttatattg atggctctaa agatactatt ttaggtatga tacacatacg
     7261 agatataata caaaatgaat taaaccataa aagtcaaaat ttagatactt ttgttaaacc
     7321 tttgattttg gttcctgaaa atatcagcat ttcaaaagta cttgtaatga tgaataaaga
     7381 acgctctcat actgcattag tagttgatga gtatggtgga actgctggaa ttttaaccat
     7441 ggaagatatc atggaagaaa ttattggcga aattaaaagc gagcatgaag aagacagcta
     7501 taaaaaactt gctgaaaata tctatgaatt tcaaggacga tgcgatatag aaactgttga
     7561 agaaatgctt gtaataaact atgatgagga tttagaacaa gttactatag gtggttatgt
     7621 atttaatctt ttaggacgct tgcctatggt aggagatcgc attgaagatg aactttgtta
     7681 ctatgaagtt aaaaaaatgg atgggaattc tatagagcgt gttaaggtgg ttaaaaaaac
     7741 aaataaagat gaagaataag cctctttagg cttatttctt tttgtaaatt tggtttttaa
     7801 tttctataca ctcaaaacct ttttcatcta gtgtaactac gcgtaaatat ccaccatcat
     7861 ctattttacc ctcgcataaa aatactcttt tggctatttt cataggaagt ttttctttat
     7921 ttctgtgtcc aaagatttga taaagattgt ccgaggtgaa attacaaaat tgatttgcta
     7981 ctttttgact gtcttcatat ccacctacac cataaataaa gtcatggctt ggtataaaac
     8041 ttattttttc aggtttggag ggtataaaat ttactcctcc atgtgaacaa aatatgaatt
     8101 tattttggaa tttgtagtat aaacattctt ttagatgagg atagagtttt ctagcatctc
     8161 ttggagtaag tttttctttt ctaaaatcct ttaaagtatt ttcattaaat tctttggaat
     8221 ttgacaattc tccattagcc cattttataa gatgtctttc gtgatttcct tctaataagc
     8281 atacgttttc tttttcgcaa atttttaaaa gaaattttat tactttgcca ttttctatac
     8341 ctctgttgat ataatctccc aaaaatatat aaaattcatc ttctttgatt gttttaatgt
     8401 attcttttaa aacactatag caaccttgta aatctcctat atgatgaatt tttttgtatt
     8461 tgcttaaatt tggcatttgg taaagacatt ttttccagtc tcttgagtct aaaattgggt
     8521 atttttttgg attttttttg agcaaatctt gagttttttc caaaagagca taaggaatga
     8581 tatatccatt ttttttagct tctaaaagat ttttttcttg acattgtttt aaagagctat
     8641 caaaaacaat aacatatatt ttatagcgat attgtttagc taagtcttta taaattttta
     8701 atgtttcgtt gtaagcgttt atgatgctaa actcaccttt ttgcatacgc atttctagaa
     8761 gtttgagtaa aattttactc aaatcttcat catttttaac atttaaaatt ttatattcac
     8821 tgactatatt tttaacgcct cctgataaaa gacgcaaagc atttaaatca agtgtataat
     8881 tttgaagttt attatttttg ataaattctt cttgtcctgc gtaataattc cctcttaaaa
     8941 caagtaagat tcgcacattc tttgcctaga ttttctttaa aaattcagtt tttaaaacaa
     9001 taacgccaaa tttatctact ctagcctcaa tttcaccttc tttagaagtg agcttaatat
     9061 tttttatagt agttccacgt tttaaagttg tacttgcacc tttaacctta agatctttta
     9121 ttacactcac gctatcacct gtgttaagtt ctattccatt agcgtcttta gccatttttt
     9181 tcctttcttt gatctaaaat atttaaaatt tgcaccacta aagcaaaagc catagcggta
     9241 taaatatatg ccttatcaat atgaatatca aaactttcag caactaaaac tacgcctatt
     9301 agcaccaaaa aagctaaggc taaaatttta atgcttggat atttttcaac aaaatctgct
     9361 ataggtttag aagcaaaaag catcacagct actgcgataa taacagcgat aatcatgatg
     9421 gctacatctt gagcaattcc tactgcggta ataacactat caagcgaaaa cactatgtca
     9481 atcacagcaa tttcagctac aactatccaa agtttattgc ttgctttaaa atgactttga
     9541 ctttcttctt gatgagaaat ttgctcttta atttctttaa tagactttac aatcaagaaa
     9601 agcccaccta gtaaaagaac tagatctctt cctgaaattt cattgcccaa tacactaaac
     9661 aaaggtgtta caagtttcat tacccaaaaa agagataaaa gaagtaaaat tcttgtaatc
     9721 attgcaaaag ctaaacctaa gatacgtcct ttatcacgat gttcaggggg tagtttgctt
     9781 actaaaatag ctaaaaaaat gatattatct atccctagta caatttcaag agcacttaaa
     9841 gtagctaaag taatccaagc atcaatacta aatatccatt caaacataaa tttccttgaa
     9901 aattttaaaa ttttttaaag cgatatttta tagttttaaa gcaaatacct ttaattcttt
     9961 aagaaaaaat ttcaatcaca cttaagggta aaatttcatg ttctagacta tgaatttttt
    10021 cttcaaattc ttcaaaactc aaatttcttt tttcaaaagc tttttgagct ataatcattc
    10081 caccatcaag ttcttcactg acccaatgca cactcacacc agctactttc atatcacttt
    10141 cataactttc tttaatcgca tgtgctcctt taaaaagggg taataaagaa ggatgaaggt
    10201 taattgcctt aatatttttt gtaaaaacag gacttaaaat tctcataaaa cctgctaata
    10261 cagtaagatt tgctccactt tctttgattt tttgtaccaa aatcgtatca aattcttcac
    10321 gagtattata agccttatga tcaacaatga cagtatcaag accaaatttt tttgctcttt
    10381 gtacaccaaa agcatctttt ttattacaaa tgcaaagtac tacttcatag gtattttccc
    10441 ctatggtttt tttatgaagt ttttctaaaa tattttctaa attacttcca tttccactaa
    10501 aaagtacagc taattttaca agcattttaa tcctttgata agttttaaag cgtcaaagct
    10561 atttttatta aatttatatt tttttgcaac aagtccatga gctaaagtag cattttttgc
    10621 tgcttctaaa gcgctaaaac caaaacctaa atgtgcagca atcattccac ttaaaacatc
    10681 tccactccca cctttagcta aggcttgatt tcctaaattt acaacaaata atttttcttt
    10741 ttgcacaata ataggatttg ctccttttaa aacaagaaca caatcataat tttgtgaaaa
    10801 ttttctagca tagaaaaagc gatttttttg caatgtttct atatctaaat tctcatcaaa
    10861 gcacatttta taaagtttta taaattcttt tggatgaggg gttataacaa catcttttct
    10921 gtttaaatac caaagcaaag cttcacttaa aaagcagttt gcatccaaga tcaaaggagt
    10981 gttttgcaaa atttcatctt ttagaaaatc caaattttca agccccatac ctaaagcaat
    11041 agcacttgca ttattttcaa ttttttcttt taacatcaaa agaggcgaga aacttttttg
    11101 tgctactaaa gaaacaagac ctgctccaaa atttaaggct ccaagtcctg ctaaagttcc
    11161 agcacttgca ttggcaacta tataaatatg gccaaaattt cctttattgg cgttgatttt
    11221 tctatctata gtttttaaat cttttttttc aagcaaaaaa gcttgagaat tagggtaaaa
    11281 tttcttagat ctaatgccta aattggctat tttaatcctt cctacaaatt ccttagcaaa
    11341 atcttcaagt aaaatttcct ttaaagctcc catacaaaat gtaatatcag ctttaaaaca
    11401 aggataaaat cccaaatttg taggtatatc acaagctatt tttaaagcct tactttgatt
    11461 aactttttga ataattaaac ttgttttttc atctaaacaa cgatttgaac ctgtacctaa
    11521 aatacaatca atgataatat gaaatttttt aaaattgggt tcttttttac aaaatttaaa
    11581 agcataattt tgtaaaattt gctcttgttt tttaaaaagc gtattttctt taaagcctat
    11641 tttataagct ttagcgtgtt ttaaatttct taaagccacc aagccatctg aagcgttgtt
    11701 acccccgcct aataaaaaaa gtatttttac ttttctaatc ttgcgttgaa tgcgaatttt
    11761 tttagcttct tttttaatta gcttggctaa atttaatccc gcattttcca ttaaaataag
    11821 ctcatctaag cctttattta tagcattttg ttctaaaatt tttatattat caataatagc
    11881 tttcataatc ttttttcacc aaaaaatata tatttttttc tctttcttct tcaaattttt
    11941 tcattttggg taaaaatttc tggatcaaag cacgaaaatt cttaaaacca taattttgcg
    12001 gatgaaaatc cgagtatttg cggttcatat tagtacggat ttgtgcgtat tcggcacgcc
    12061 ctttttcatc gataagttgt tcggtgatat tgattaaagc tcttaaataa tccttactta
    12121 aaatatcttc ttttttactc tcatctttat ctaaataaaa aaattcacta aaggcattta
    12181 cataagattt tatagacttt tcaagcccca ttcctataac ttgtttttta ttttctctta
    12241 atttttgaat gagtgaagta taatcactat cgcttgaaac aataacaaaa atatctatat
    12301 ttttttcata aaatatggac ataatttcag tgattaaata catatcgctt gagtttttgt
    12361 tggctgcaaa attaaattgt tgcatagcga ttaaagaata ttcagcaatt tgctctctcc
    12421 aaccttgtat atttttttga gtccaatccc cataaatgcg tttaatgata acctctccgt
    12481 aatctgaagc gatatcaaaa atacttttag cgtattttgc agggatattt tctgcatcta
    12541 taaagatagc tatactttta ttttccattt taattccttg ctctaaagct taaagcttct
    12601 aaaatatggg ttttgctaat attaagactt tgttctaaat ccgctatact tcttgaaact
    12661 tttaaaattt tattaagcga tcgcaaagaa agattataac gtgaaattgc taaatctagc
    12721 gtatctttgg catctttttc caatacacaa aaacgactta aatcttcatc ttttaatttc
    12781 ccattaaatt ctttttgccc ccgtttttta ctaaaaataa aagcttgtaa aattttttca
    12841 ctcatttctt tagaacttat actcgtttta tcatccttgc tgatctcatc catagctaca
    12901 taaagatcaa tcctatccat aataggagct gaaatgtgat ttttgtattt tttaatctca
    12961 ttttcactac aaacacaaga aagatttttg gagaataaat ttccacaagg acaaggattt
    13021 tgggcagcta taaagctaaa ttttgtttca taagtgattt tagaatttac tcttgaaata
    13081 tgaattttat gatcctctaa aggttctctt aaactctcta tgatttgctt gttaaaatgt
    13141 ggaaattcat caaaaaacaa tactccacca tttgcaagtg ctacttctcc aattctggca
    13201 ttttttgttc ctccgccaaa aatacttgct cttgtagaag tatgatgagg atgacgaaaa
    13261 gcacgaattt tagtaaattc acaatctttt gaatctaaag acatataagc attttgcatt
    13321 aaaatttcac ttaaactttg agggggcatg atataaacaa ggcgtttagc acacatgctt
    13381 ttaccacttc ctggacttcc ttcaaataag atattatgca tacctaaagc agctatcata
    13441 caagctcttt tggctttttc ctgccctttg atatctttaa aatcaagttt aaaatccata
    13501 ttttgtaaaa aaatttcatt ttctatttgt aaagggtttg caaataaagg atgattgtga
    13561 gaaaagcgaa aattttcata atttttttct ttaaaaaact ctattgcttc atttaaattt
    13621 tcaagtccat aaacctctaa atttggtatc atggaagctt tttgtgctat actttttgga
    13681 acaacgatct tagctttttt aattttagca gagagaaaca aaagcaaaga aaaaagctca
    13741 tttgtgcttt taatacttcc atcaagtcct aattctccta ctacaaaaaa gtcatctaat
    13801 tcttcatttt gcaaaaggat taataaagcg atagccaaat caaaatgcga tccctttttt
    13861 gggatgcctg aaggactaag attgatagtg atttttttag caggaaaagc aaaatcacaa
    13921 cttaaaagtg tggctttgat gcgttcgaca ctttccttaa tcgctgtact tgcaagccct
    13981 actatgctta aatttggcaa acctcttgta aaagtggatt ctacctctat aatgtctaag
    14041 ccttcatgaa agcttatgca ctttagtttt ttcatttctc ttttttatga tttttcttct
    14101 ttttcttaaa ttctttatcg aatttttgac gcttagcaaa ggaaattttt tctataaata
    14161 aatgtccatt taaatgatca ttttcgtgtt gaatagccac agctaaaaaa ccttttgctt
    14221 caagttcttt aaattctcca aagcgatctt gatatttaag caagatatga ttatagcgtt
    14281 tcacttcttc aaaaaaatct ggcacactca aacacccttc tgtgcaagta atcatttctt
    14341 catctaaagg aataatttca ggattgataa tctctagcaa atcttctttt ttttgttcat
    14401 cgttttcatc aaaaatattt acaagtaaaa cacgcaaagg aatatccact tgaatagctg
    14461 ctaaacctac tccattactt gctatcatag tttcatacat atcatcaagc aaggtgtgaa
    14521 gttctgtatc aaatttattt acaatttcag agtttaaaaa aagtctagga ttgggatagg
    14581 tgataatttt tctaaccatt aaaaaacctt tgttttaaat gatctccaaa gaaatcattt
    14641 aaaacttttt tccaaaacct tatcaatcag cccatattct ttagcttctt gtgctgacat
    14701 gaaaaaatct ctttctgtat cttttgctat ttttgcaact ttttgcttag tattttttgc
    14761 caaaatatca ttaagtatag ttttgagtct taaaatttct ttggcttgaa tttcaatatc
    14821 tgtggcttga cctctagctc cacctaaagg ttgatgaatc ataatacgtg aattaggcaa
    14881 agcaaaacgt tttccttctg cgccacaact aagcaaaaat gctcccatag aagcagcttg
    14941 tcctatacaa atcgtacaaa catcaggttt gatatagttc atagtatcat aaatactaaa
    15001 accacttgta attacaccac ctggagaatt gatataaaga taaatatctt ttgtaggatc
    15061 ttcagcttct aaaaaaagaa gttgtgctac gatagaagcg gcaagttcat catgaatttc
    15121 accacttagc ataataattc tatcttttaa aaggcgtgaa taaatgtcat aacttctttc
    15181 accacgacta gatttttcaa taacataagg aataaacatt atttatcttc tttctctttt
    15241 ttgctcactt tttctgattt ttctgttttt tctgtttttg gtataaaaat atcattaaaa
    15301 agtttttctt caattaaagc cattttcaca gcaggcaaag ctccttgttt tttatagttt
    15361 tctaaatgct cttttggatt cataccatag cgatatgctt caaaataaat cgcttgaatc
    15421 aattcttgat catttacttc aatcttacgc aattttgcaa gttcatcaat gataaaagta
    15481 agttttacac ttttttgtgc ttcttcttta aaagaatcac gtttttcttg atatttttct
    15541 ttacttgctt taagctcttc aatttctttt tcgctaaaag tattaaaagc cgcacgcatc
    15601 tgcatatcag tttcttgttc tactatgcct ttaggtaaat caaaattata tttttcaatc
    15661 aaagcatctg caaatttgcc ttttaattca tcatttacaa gtttgaaaag tttttcattt
    15721 ttgatttgct cttttaattt ttcatctaaa acttcaacac tagctttttc ttctcctggt
    15781 aaaagttttt taagcatttc atcatcaagt tctggaattt taagctcttg aatttcatgt
    15841 agttttactt taaatactgc atctttaccc gctaaatgcg ctgcgccgta ttctttaggg
    15901 aaagttactt tgatatcttt ttcttcacct attttcattc ccaccatacc atcttcaaaa
    15961 cctggaataa attgcttaga accaatttct aaaacataat tttcagcttt accaccttca
    16021 aaagctttat catctacaaa accttcaaaa tcaaattttg caaaatcacc ttcttttaaa
    16081 gctctttttg tttttatagc ttcaggagta gcaaaacgct ttaaaagctc atcttttttc
    16141 tcatcaattt cttttttact tacttttgga gtttgatatt cagggatgag tttttcataa
    16201 ccctcaagtt tgatttcagg tttaaaagaa agtattaatt cagcaataat ttctccatct
    16261 ttacgatcaa atttttcaaa atatggctca cctacaagct ctttattttc ttttttaagt
    16321 tcttgtaaag cgctatttac agcggattta aaaagatttt gttctgcatc ttgagtgagc
    16381 tctctttcat atcttttaag tacggcactt acaggaactt ttcctggtct aaacccatcc
    16441 atttttacac ttttagaagc tttttttgct aaattttcta cttcactttt gatcattcct
    16501 gaaggaattt ttacactagc agtcgcatta acagaatcta gttgctttgc ctttacttcc
    16561 atagtttttt tccttataaa ataaaatttg ccttcaataa tagcaaattt ttccttatta
    16621 cttgcataaa attttaaagt aatttatgat aaaattgcaa tattacatta ttattaaaat
    16681 ataaaaaata tttttggaga aaaatgtgca aaaaaaattt gaagattgtg ttaaaaccat
    16741 gcttgaaatt ataggagaaa atccaaatcg tgaagggctt attaaaacgc caaatcgtgt
    16801 ttttaaagct tatgaatttc ttactagtgg ttatacgcaa aatgtcaaag aaattttaaa
    16861 tgacgcttta tttgaaagtt ctaataatga aatggtttta gtgcgtgata tagaatttta
    16921 cagtctttgc gaacatcatc ttttgccttt ttttgggcgt gctcatgtag cctatatccc
    16981 taataaaaaa gtagtaggtt taagcaaaat tccacgcctt gtagaagtgt ttgcaagaag
    17041 acttcaaatt caagaacaac ttactgaaca aatcgcacaa gctttaatgg aaaatgtcga
    17101 tgcaaaaggt gtgggtgtag tcatagaagc aagacatatg tgtgttgaaa tgcgtggagt
    17161 gcaaaaagct aattccacca ctacaacttc agctttacgt ggaattttct taaaaaatga
    17221 aaaaaccaga gaggaatttt tttctctcat aaactctgct aaacaggtaa gattttaatg
    17281 aatcttgaaa aactacgctc caaacttggc aaagaaaatt taagtgctat ttttggagag
    17341 attacaaaaa tttctgctac aagtatagaa attcgtgggc ttaaaacagg ggttggagat
    17401 atagtgaagt tagtttctaa tgaaaatgaa aatttaaaca ctctagctat ggttgtagaa
    17461 atcaaagaac aatttagcta tttaagccca ttttctttta tagaaggttt taaaataggc
    17521 gatcgtgctt ttataagtga tgcaggtatg caaataggcg ttagcgatga acttttaggc
    17581 agggtagtag atccttttat gcgtccaaaa gatggtaaag gagctataga agcaaccaaa
    17641 tatatgccta taatgcgtgc acctattgat gcaatgaaaa gagggcttat agaagaagtt
    17701 tttcccgtgg gtgttaaaac catagacgcg cttttaactt gtggtgtagg acaaaaactt
    17761 ggtatttttg caggaagtgg ggtaggaaaa tccactctta tgggaatgat agttaaaaat
    17821 tccaaagctc ctataaaagt agtggcactc ataggagaaa gggggcgtga aattcctgaa
    17881 tttatacaaa aaaatttagg cggaaagctc gatgatacag tgattattgt tgctacaagt
    17941 gatgatagtg ctttgatgcg taaatacggt gctttttgcg caatgagtgt ggcagaatac
    18001 tttaaagaac agggcaaaga tgtacttttt atcatggata gtgtaacgcg ttttgctatg
    18061 gcacaaagag aaattggact agctcttgga gagcctccta caaccaaagg ttatccacca
    18121 agtgttttaa gtcttttgcc tcaactcatg gaaagaaccg gtaaagaaga aggtaaaggc
    18181 actataacag ccttttttac cgttttagtg gatggtgatg atatgagcga tccaatcgcc
    18241 gatcaaagtc gttctatctt agatggacac attgttttaa gccgtgaatt aacagacttt
    18301 ggaatttatc ctcctattaa tatacaaaac tctgcttcaa gggtgatgag tgacattata
    18361 agtcctgaac ataaactttg ggcaagaaaa tttaagcgtt taaactcgct tttaaaagaa
    18421 aatgaagtat tgcttcgcat cggtgcttat cagaaaggaa gtgataaaga acttgatgaa
    18481 gctatttcta aaaaagaatt tatgcaaaaa ttcttaggac aaaatcctga agaaagcttc
    18541 gaatttaatc aaactttaga gcttttaagt caaattgata caccaaatac tcctttgcca
    18601 ccaactcaaa atataaatgt aggaagtgca agtgcaactt tgcctaatcc taatttaaaa
    18661 taaaattatt taataaaata atctccatca aaactgatta aagaatattt cctttcatcg
    18721 cctatgcttt gagttagctc ttctatgctt aaaaaactta gcgtatcagc ttctacatat
    18781 tcacgcactt cttcagcatt tttatttgca ctgataagtt cttcaaaagt tggagtatct
    18841 atgccataag tatcaggaaa tttgatctca ggacaagcta tggcaagatg gattttgctc
    18901 gctcctgcag cacgaagcaa agaaattatt tttttagaag tagtgccacg caccaagcta
    18961 tcatcaatga ctacgatttc tttgccttct aaaactttac gcataggatt aagttttaat
    19021 tttactttta aatttctaag ctcttgagtt ggttctataa aagttcttcc tacataatga
    19081 tttcttacta ttgccatttc aagagggatt tgtaaatatt gcgcaaaacc tatagctgca
    19141 cttactccac tatctggcac aggcacgaca aagtctgctt tataagcaaa ttttttagct
    19201 aaagcttcgc ccattttttt acgcacttca tacacgcttt tgccttctac tatactatca
    19261 ggtctagcaa aataaatgta ttcaaaagcg caaattctag gagtttgaga aaaaagttct
    19321 atgctttcaa atttatcatt tccctgagta aaaataagca tttcccctgg tttaacatca
    19381 cgaataaatt cagcctctat aagatcaaaa gcacaagttt cactagcaac tatatagcct
    19441 ccatctttta aacgccctaa agacaaagga cgcaccccat gaggatctct tacaacataa
    19501 agtttatctt tgcttgctaa aacaaaacaa taagctccta tacattcttt taaactctca
    19561 ataaatctat cttttagact ttcttgctta cttcttgcga taagatggac aacattttct
    19621 gtatccatat tggtttgaaa aatagcccca tcttgaataa gtcttgatct tacctcttct
    19681 ttattgacta aatttccatt atgcgctaaa gcaatatcac ctaaaaccga agtagctgct
    19741 atgggctgag cgtcatttaa acttgaattt cctgctgtag aatagcgatt atgccctata
    19801 gcgatttcac cttctaaagt ttttagatta tcaggattaa aaatttgact cacttcacct
    19861 ttagctttaa tagtcttaat atttttacca ttactcacac taatgccact tgcttcttgc
    19921 ccacggtgtt gcatagcaaa aagcgcataa tacgcataag tgctagcatt ttttgaattg
    19981 ataactccta caactgcaca cattttaaat tcctaaaaaa tcattgattg aatacatttt
    20041 tgcttcttgc ttgctaagcc aaatagcgat tttaatcgca cctttagcaa aagtcgccct
    20101 tgaagtagcg gtatgattaa gttctaaaaa ctcaccatct tcgtaaaaac ctaccgtatg
    20161 gcgtcctact atatcgccac cccttaaact catcacggca atctcatctt tacttctttc
    20221 acctataatg ccatctcttc cacttactct tactttttca agttctaaat ttctagcttt
    20281 tgctacactt tgagctaaag tcatagctgt accacttggg gcatcttttt tatggcgatg
    20341 atgcatttct aaaatttcta tatcaaaatt tcttagcatt tgactggctt tactagcaag
    20401 atagtttaaa accgcaacac ctaaagacat attggtcgca taaaaaatcg gcatcacttc
    20461 actagcactt tgcatcaaat gtaaaatttt ctcatcaagc cctgttgtac ctattaccaa
    20521 aggtttaggc atagttcttg cataatttaa aagctcatga gttccacttg gggaagaaaa
    20581 atcaataatc acatcgcttt tttcaaaaag ctctcctaaa tttccaccct tatcataaag
    20641 tatcgaaatt cgtgcttgtg tttcgctttt taaacattct tcaatctgtt ttcccattcg
    20701 tcctttagcg ccataaattc ctattttaat catctttttc cttgaaaata aaatattgat
    20761 tttagcattt attttgtaaa ttttaaataa taaaattaag ctttatggtt ttttaattta
    20821 tataaattat ctaacaattt tgcttcttct cctaagccct tgctatgata aaattttaaa
    20881 tttttactaa gatatttttg ctctacccag ccaccaaaat catgtggata aagatagttt
    20941 tgtttttctt gatgattgtt gttaagataa ttaggtattt ctaaagcttc attatttttt
    21001 acatagttta aagcttcatt gatagctttg tagcttgcat tggatttgat tgtgcttgct
    21061 aaataaacta cgcattgggc taggataatt cttgcttcag gataacctat atttttaaca
    21121 gcatctagag tcgaaactgc taaatttaaa gcatttggat cggcatttcc gacatcttca
    21181 cttgaaaaaa tcaccaaacg cctagcgata aaatccgcac tttctcctgc atcaataagt
    21241 cttgcaagat aataaatagc tgcatcaacg tcacttccgc gtaaactttt tatcattgca
    21301 cttgctaaaa tataatgtgt atcttttgag ctaacacctt cactatttat ggtgttgcga
    21361 agttttttaa gattttcaag actgatatgt ttttcatcta aaaccaagac aaattcaagc
    21421 aaatttagca tagctcttgc atcagcactt ttaagtagaa aatctttagc ttctttatca
    21481 atactaaatt tcattttttc ctgtacgcgt aagagtaaag tttcaagttc ctttgcccct
    21541 aaagatttaa attcaaaaag catggaacga cttcttatac cagaacttaa aacaaaatag
    21601 ggattttcag tgcttgcacc aattaaaatt aaacggtaat tttccatagg aattaaaagc
    21661 atttcttgtt gggttttgct aaggcggtga atttcatcaa taaaaattaa aggcttataa
    21721 agactatttt tataattatc taaaattttt cttagttctt cgagtttaaa atttcctcca
    21781 tcaaattcat aaaaatctaa gccaaattct tttgctacaa ctctagcaaa agttgttttt
    21841 ccagaacctg ctgttccaaa aaaaatacta tgaggaagtt tttgtaaagc agtaaatttt
    21901 ttga
//
LOCUS       DARBBO010000019        20562 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.019, whole genome shotgun sequence.
ACCESSION   DARBBO010000019 DARBBO010000000
VERSION     DARBBO010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20562
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.019"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..340
                     /locus_tag="SB854_000565"
     CDS             <1..340
                     /locus_tag="SB854_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG0956599.1"
                     /translation="NVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIA
                     NAMSKQNIFEGILVMMIFGISTLPAILFFSKISQFFSDFLKNLFNYLSYGVIVCYGIN
                     LAYIGFKAFQ"
     gene            337..1548
                     /locus_tag="SB854_000566"
     CDS             337..1548
                     /locus_tag="SB854_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing sensor histidine kinase"
                     /protein_id="HEG0956600.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHDVSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITI
                     KDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACF
                     EIFLKLKERVE"
     gene            1551..2231
                     /locus_tag="SB854_000567"
     CDS             1551..2231
                     /locus_tag="SB854_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG0956601.1"
                     /translation="MSQECKELIILVVEDEVKARESMINILSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDYLIGEKIEANMLVKISEEYQFNKTKRTLIYSGGEIVLTKK
                     ELAFISLLLKQPGALVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            2357..3823
                     /gene="ccoN"
                     /locus_tag="SB854_000568"
     CDS             2357..3823
                     /gene="ccoN"
                     /locus_tag="SB854_000568"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HEG0956602.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGIGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            3836..4501
                     /gene="ccoO"
                     /locus_tag="SB854_000569"
     CDS             3836..4501
                     /gene="ccoO"
                     /locus_tag="SB854_000569"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HEG0956603.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            4506..4769
                     /locus_tag="SB854_000570"
     CDS             4506..4769
                     /locus_tag="SB854_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HEG0956604.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYLYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            4769..5632
                     /locus_tag="SB854_000571"
     CDS             4769..5632
                     /locus_tag="SB854_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG0956605.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            5629..5850
                     /locus_tag="SB854_000572"
     CDS             5629..5850
                     /locus_tag="SB854_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HEG0956606.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILAVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            5847..5948
                     /locus_tag="SB854_000573"
     CDS             5847..5948
                     /locus_tag="SB854_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956607.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            5945..6547
                     /locus_tag="SB854_000574"
     CDS             5945..6547
                     /locus_tag="SB854_000574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956608.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     ALALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            6534..7055
                     /locus_tag="SB854_000575"
     CDS             6534..7055
                     /locus_tag="SB854_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0956609.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            7052..9418
                     /locus_tag="SB854_000576"
     CDS             7052..9418
                     /locus_tag="SB854_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEG0956610.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSKFEENLLSEISQIKEVVLSFKTSKFNLEYLLKLDFLKIFDLKINTHYEINL
                     SKQEILKEEIFKTKNSKMKLKSFELRALQCAFVMDEISHFVRKGLKPENIAVITPDES
                     FCEFLRLFDKDNMLNFASGISIKESLFYQKFQALYESASSASFVYKNQEDYFEDTRMM
                     FDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEKLLALFLENEKQELIYLIRKELYFIK
                     DLLKNQSLTLKELIHLFFMQISQLSLSDVGGGKVTVMGLLESRGLCFDGVILVDFNEE
                     FIPKRSVNELFLNNEVRKKAGLISYDRRENLQRFYYESLMKNALEVSICFVENEEKSK
                     SRFLDELDFDFFYETHIHQKAYLNALKLDYEGIKPNLTPIKAPILKHNPFEFPLSFSR
                     FNLLENQKRTYYYRYILNLAEPRVLSEESKAKNQGNFIHKMLEIYYKNYANNDFDINV
                     FANLLDKEYQKYNISELDLEVFKLKFIQFAKNEKEHFSKGFYVAHTELELNNILKLGT
                     DSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNSYQLAFYQALYDENASVGFYDLNSMQ
                     ILHQKAKSLDELRERLKDLVLMSKEEIEFENEQDEYCPYKLIYKKELK"
     gene            9415..12180
                     /locus_tag="SB854_000577"
     CDS             9415..12180
                     /locus_tag="SB854_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HEG0956611.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGVKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDNLNTNYRSKELLVDFVNETFKEKIKDYKEQFALENKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQNI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKITLDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKITLQEIQSEERLDSKELYFGNAFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEILLKNIQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEAFIIDYKTGLAMQDKHKEQVGTYKIAISEILQKDKVRAFIVYCLEN
                     EIQILEI"
     gene            12264..12689
                     /gene="rplM"
                     /locus_tag="SB854_000578"
     CDS             12264..12689
                     /gene="rplM"
                     /locus_tag="SB854_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEG0956612.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            12692..13081
                     /gene="rpsI"
                     /locus_tag="SB854_000579"
     CDS             12692..13081
                     /gene="rpsI"
                     /locus_tag="SB854_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEG0956613.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            13207..14166
                     /gene="cadF"
                     /locus_tag="SB854_000580"
     CDS             13207..14166
                     /gene="cadF"
                     /locus_tag="SB854_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HEG0956614.1"
                     /translation="MKKIFLCLGLASVLFGADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRATPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            14166..14807
                     /locus_tag="SB854_000581"
     CDS             14166..14807
                     /locus_tag="SB854_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEG0956615.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLAYREIYAQIYLEQTTLLPKAKEALELGSEIADL
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITFEDVTNPKPSSEPIILALKGLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKAHSMVFLNAYEAVNYIARLN"
     gene            14900..18460
                     /gene="nifJ"
                     /locus_tag="SB854_000582"
     CDS             14900..18460
                     /gene="nifJ"
                     /locus_tag="SB854_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEG0956616.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAAQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLDREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYNALPDVVNEYMQEISKITGREYKPFTYYGHKEPECVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIIDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKEATKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYTHLIKAITAAEAYNGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            18484..18795
                     /locus_tag="SB854_000583"
     CDS             18484..18795
                     /locus_tag="SB854_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HEG0956617.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKEIKFQYDNLEIAIQINKNDKINI
                     N"
     gene            18773..20185
                     /gene="mshL"
                     /locus_tag="SB854_000584"
     CDS             18773..20185
                     /gene="mshL"
                     /locus_tag="SB854_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HEG0956618.1"
                     /translation="MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAK
                     YCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGI
                     NTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
                     KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIID
                     VSILAVSLNESHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDS
                     IINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNN
                     YSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSS
                     VVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITP
                     SIVDSVNAPSLKDLGFKHYE"
     gene            20178..>20562
                     /locus_tag="SB854_000585"
     CDS             20178..>20562
                     /locus_tag="SB854_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0956619.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAMLESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKL"
BASE COUNT         7402 a         2434 c         3738 g         6988 t
ORIGIN      
        1 taatgttttt tttgatagtt ttgtaaagaa aattattaaa aaatctaaaa attttaaagg
       61 attaaaatca gccatatttt taggattttc aaatggtttt gttccttgtg gattggtgta
      121 tttttttata gccaatgcaa tgagtaagca aaatattttt gaaggtattt tggtaatgat
      181 gatttttgga atatcaactt tacctgcgat attatttttt tctaaaattt cacagttttt
      241 tagtgatttt ttgaaaaatt tatttaatta tttatcgtat ggcgttattg tttgttacgg
      301 tataaatctt gcctatatag gttttaaggc ttttcaatga aagatttttt taaagatcag
      361 ttttttaaag ctcttgaaaa aaatacaatt ttttcaagag ctgatgttca aggaaattta
      421 atttttgtca gtgataagct ttgtcaaata agtggatata gtaaaaaaga gcttatagga
      481 aaaaaacatt caatatttaa acatccagat gttgaggaat gttatattga agaactttta
      541 aaaaaacttt catataaaaa accttatcaa gttattttta aaaatattga taaattaggc
      601 aaaactttct atcttgaaac tttattaatc cccatattgg ataaaaataa tgaattaata
      661 gaaatagtag cattctctca tgatgttagt aattctttta agcttaatga agagcttgct
      721 ctaaatcacg ctaaattaag agaattaagt attaatcttg aaaatacagt taaaaatcac
      781 caacaagaat ttatacagtt aggtaaaaaa tttgagaaaa aaatgcaaat tgccttggaa
      841 aaaaatgaaa aagatattaa aatagcatat gaagagattt tgaaatcttc attagaacaa
      901 atgattagcg atatagcaca tcaatggaga caaccgttaa atgagctcgg tattgccatg
      961 tttcaaatga agcaaaatct taaagatgaa aaaggatttg ctgaaattta ctcacaatca
     1021 aaagatatga ttaaaaatat gtcagaaaca attgatgtgt ttagaacttt gtttaacaaa
     1081 ggagtagagc agtgtgtatt tataaaagag actttaaata aagccttgga aattgctttt
     1141 gaaactatag aaaaaaatca tgtaaatatt aatattgttt cgaaaagtga ttatgaagtt
     1201 ttggcatatg agaatggttt aataagagtt tttcttaatt tgattttaaa ttcaatagaa
     1261 gcatttaaaa acaaaaaaag gaaaatcata acaataaatt tttcaaaatt tggaaaaaat
     1321 tatctgaaaa ttacaataaa agataatgct ggtgggattg ataaagaaaa tttagataaa
     1381 atttttcaac cttattttac aacaaaacat cctagtcaag gtataggagt aggactttat
     1441 ataagtagac aaattatcga aagtttccaa ggaaaaataa aagttaaaaa tggaaaagac
     1501 ggggcttgtt ttgagatatt tttaaaacta aaagagaggg tagagtagaa atgtcacaag
     1561 aatgtaaaga attgataata ttagtagttg aagatgaggt taaggctaga gaatcaatga
     1621 ttaatatatt aagcgaacgc tttagtaaag taatcggagc tcaaaatgga gatgaggggc
     1681 ttaaaaaatt taaaaaattt aagccagatt tagttatcac agatattgct atgcctatta
     1741 tggatggact ggatatggca agagagatta aagaaatttc agatgatgtc ccaattgttg
     1801 ttcttagtgc gtattcagag aaagagagac ttttgcgttc tattgatatt ggtatagata
     1861 aatatttgat taaacctgtt gatatagaag agttgtttaa agttttagat tatctgatag
     1921 gtgaaaaaat tgaagcaaat atgcttgtaa aaatttctga agaatatcaa tttaacaaaa
     1981 ctaaacgaac tttaatttac agtggtggag aaattgtttt aactaaaaaa gaattggctt
     2041 ttatttcttt gcttttaaag caacctggag ctttggtttt gcatgaagat attaagaaaa
     2101 atgtttggat aggtgaacat gtgagtgata ctgctgttag aacttttata aaaagagtaa
     2161 gagataaagt gggtgaagat tttataaaaa atgtgccaag tttaggttat aagataaata
     2221 tcaataaata agactgattt agccttaaaa tataaaacat aacaaatgat taacaaaatt
     2281 atcattttta agaaaaaatg tataattaat attctataat attctcttgt tatcaaaaat
     2341 tttaaggaga aagtcgatgc atccaggtaa tgtattaaat tacgactata cggttgcaag
     2401 atattttatg tttgcgacca tattgtttgg cattgttggt atggctatag gaactcttat
     2461 agcttttcaa atggcatatc ctaatttaaa ttatttagca ggagaatatg ccactttttc
     2521 aagacttaga ccacttcata cttcaggtgt gatttttggt tttatgcttt cagggatttg
     2581 ggcaacttgg tattatatag gtcagcgtgt tcttaaagtg agtatggctg agtcaagatt
     2641 tttaatggct gttggtaagc ttcatttttg gctttatatg cttactatgg ttttagctgt
     2701 tatatctttg tttatgggtg tgactacatc taaagaatat gcagagcttg agtggccttt
     2761 agatattctt gttgttcttg tttgggtttt atggggtgta agtatttttg gacttattgg
     2821 aattcgccgt gaaaaaaccc tttatatttc tctatggtat tatatagcta catttttagg
     2881 tatagctatg ctttatcttt ttaacaacat ggaagtacca acttattttg ttactggaat
     2941 aggtaaatgg tggcatagtg tatcaatgta tgcaggaaca aatgatgctt tagtacaatg
     3001 gtggtatgga cataatgctg tggcatttgt atttactgtg ggtattattg ctcaaattta
     3061 ttacttcttg ccaaaagaaa gtggtcagcc gattttctct tataaactct ctttatttgc
     3121 attttggggc ttaatgtttg tttatctttg ggcaggtggt caccatttga tttattcaac
     3181 tgtacccgat tggatgcaaa ctatgggttc ggttttctct gtagtattga ttttaccttc
     3241 ttggggttca gcgattaata tcttgcttac tatgaaaggt gagtggagcc agcttcgcga
     3301 gagtccgttg attaaattta tgattttggc atcaactttc tatatgttct caacacttga
     3361 agggccaatt ctttcaatta aatctgttaa tgctttagca cactttacag attggattcc
     3421 aggacatgtt catgatggaa cattaggttg ggtaggattt atgactatgg ctgcgcttta
     3481 tcatatgact cctagagttt tcaaaagaga gctttatagc aaatctttaa tggaagctca
     3541 attttggatc caaactacag gtatagttct ttattttgct tcaatgtgga ttgcaggtat
     3601 tactcaaggt atgatgtgga gagcgacaga tgagtatggt aacttgcttt atagctttat
     3661 tgataccgtt gtggctattg ttccttatta ttggattaga gcgattggtg gattgttgta
     3721 tcttatcggt ttctttatgt ttacttataa tatttacaaa acaattgctt gtggaagagt
     3781 gcttgataaa gaaccaaaaa gcgcttcgcc tatggcagca taaaaaggag aaaatatgtt
     3841 tagttggtta gaaaaaaatc cattcttttt tgctgtagct gtttttgtag tgattgctta
     3901 tgcaggcata gttgaagttt taccaaattt tgcagaaaat gcaagaccaa ttgaaggtaa
     3961 aaaaccttat acggttttac aacttgcagg gcgtgcagta tatattaaag atagttgtaa
     4021 tgcttgtcat tcacagctta ttcgtccatt taaatcagaa acagaccgtt atggtatgta
     4081 ttctgtaagt ggtgaatttg cttatgatag accttttctt tggggttcaa aaagaacagg
     4141 acctgatctt gctcgtgtag gaaattatag aacggctgat tggcatgaaa atcatatgtg
     4201 ggatcctact tctgttgttc cagattctat tatgccttca tataagcata tgtttaaaaa
     4261 taatgcagat attgaaactg cttatgctga ggctttaact gtgaaaaaag ttttcaatgt
     4321 tccttatgat gcagaaaatg gaacaaaact tggttcttgg gaggatgcac aagctgaagt
     4381 aaaagctgaa gctcaggcta tagttgatca aatgaaaaat caagaagtaa aagatgcttt
     4441 tgctaaaggt gaaatcaaag aaatagttgc tttgatcgct tatttaaata gtttaaagta
     4501 agatgatgga acatttatca atagtttttg atgtgattaa aaatttaatc acatttgatt
     4561 tagcaacagt tcaaaaacat gagtgggaga ttttccaagg ttatggtttt tttgcactcg
     4621 tgatgttttt gtcaatagta ttatatgcgt atttgtatca tttatataga acagaaaaaa
     4681 aaggcgagag aaattatgaa aattatgcaa accttgcctt aaaagatgat attgatgata
     4741 gtgtattaga aagtaaaagg agtgcttaat gcaatggtta aatttagaag ataatgttaa
     4801 tctcttatct ttaattggag ctattcttat cattttaatc acactggtta ttgtgggtag
     4861 aatgtttaag caaatgaaag aaaagaaagg cgagtcagag cttagtgaac atagttggga
     4921 tggaatagga gagtataaaa atgctgttcc tactggttgg gctgtggtat ttttcctgac
     4981 tattgtttgg gctatttggt attttctatg gggatatcct ttaaattctt tttcaagtat
     5041 aggtcaatat aatgaagaag tagcaactca taatacaaaa tttgaagaaa aatttaaaaa
     5101 tttatctcct gaagataaaa tagcaatggg tcaaaatatc tttttagttc agtgttcggc
     5161 ttgtcatgga attacaggag atggtatcaa tggtaaagct caaaatttaa atatttgggg
     5221 tagtgaagaa ggtataatca atgtaattaa acatggttca aaaggtatga attttccagg
     5281 tggagaaatg cttggtgctg ctgatttagg tgtagcagaa gaagatatcc ctgctattgc
     5341 tgcttatgta gcaaaagatc tttcagctat taagaaaact gcaaatgaaa atttagtagc
     5401 aaaaggtaaa gaagcttatg caacttgtgc agcatgccat ggagaagatg gaaaaggtca
     5461 agatggaatg ttcccagatc ttacaaaata cggttctgca gcttttgtag tagatgtttt
     5521 acatagtggt aaggctggtt ttataggaac aatgccgagt tttccaacac ttaatgatat
     5581 tcaaaaagaa gctgttggcg agtatgtaat ttctctttca aggggtgaat gatggaaaat
     5641 aataatagat gcgtgttttc tctttcaggt gttacaggta tgttaattgc tacggttttg
     5701 ttgcttgcta tcttagcagt tttaactatt tggggtctta aagctcagca agaagtgatg
     5761 caaaagccat atagtcttaa agatgtacaa agtgtaaaga tgtttggttc aaaagaacaa
     5821 gatcatagaa gtataaagga agcacaatga gtaaggcttt ggaatattta attgttattg
     5881 gtttagttgt tgctgctgca atcaccgctt ggtcggtttt gaccgtaaat catcttcata
     5941 taggatgaaa aaaatattac aagatggctt ttttttagct atcttcttct ttgttttatt
     6001 gccttctagg gtttttgctc ttgatgctgt actttttaat gaaaatattt taagtcaaaa
     6061 agtaagtaac gagattaatc ttataggaaa agagctttac caaaaaagta atatttttat
     6121 cggcgttatg gttggtgata aaactgaaat tgaaacttta ttaaataaac aaaaagaact
     6181 tcctcaatct tatatattgc ttcttttgtc aaaaaattct cacaaagttg atatagtggg
     6241 ctcaaaaggt gctttagctt tgattgataa agaagctgtg cttagtcctt atcctggaac
     6301 aggatctatt ttgccgatat tagctacaaa taaaggtgat atttataatg ctgctatact
     6361 taatggttat gcagatattg tagatcgtgt ggcaaaatcc ttgggattac aattagaaca
     6421 ttctataggt aatgcaaatc gtgatactat caatatttta agaatactta tctatggatt
     6481 tatttgcttt gcattgttat actatgcaca aagaagaata aagaggaaaa aaaatgttag
     6541 aaactaaaaa aagtttttgg ccttatggta ttttgctttc acttttggct ataattattg
     6601 cttgtattgt aacgattttt atagcaagtc accatcctgt gtatgaggat gatttttatt
     6661 ttgactctta tcaaaatgtt gaaaataatt acaatcaaat acaaaaacaa caagtaaatt
     6721 ttgataaatt ttttaaagta aattttcaaa atgataaaat cacttttata ggtaaaagaa
     6781 aaattcctag ttatgaagtg gatcaaaatt cctatgttgc aaattttaaa atttctgcat
     6841 tacaaaatat aaattctaat gatttaaaag ttcaagttct tcttacaaga ccattcacta
     6901 aaaattttga tcaaaagtta gaaggacaag ttaaaaatgg aattttaagt atcgctttac
     6961 ctaaattaga taaaggtaga tgggagctta agctaaagtt ttatgcaaat caagaaacag
     7021 tgggtttttt tagctacgaa ttaaatgctc aatgaaatta agaattttta gctcttcaag
     7081 gcaaattaga gaatattata atcaaaaaaa acagcaaaat gctttattag atagtgctat
     7141 tcatataggt gaatttttag ataaagtttg tttgagcaat tttcataaag caagttctta
     7201 tgaaagtttg cttttaatgc aagaagcttg tctaaaaagt aaggatttag aaaaaaaact
     7261 aggaatttcg gtagaatttt ttgctttttt gaaaaataac gaatatcttt tttctttttt
     7321 taaagaactg agtttggaaa aaaaaagcat agaagatctt aaaaacaatg attattatgc
     7381 cacctataat gaacatttgg aaattttaga tgaggtatat aagaattatc ttgctttgct
     7441 tgaaaagaat tctttttatg atgatctttc tttacctaaa aattacactc ttaataaaga
     7501 ttttttagat gagtatgaag ctatagttta tgatttgcaa ggttttttaa gtaaatttga
     7561 agaaaattta ttaagtgaaa tttctcagat taaagaagtg gttttaagtt ttaaaacgag
     7621 taaatttaat cttgaatatc ttttaaaact tgatttttta aaaatatttg atttaaaaat
     7681 aaacactcat tatgaaatca atctttcaaa acaagagatc ttaaaagaag aaatttttaa
     7741 aacaaaaaat tcaaaaatga aactcaaatc ttttgaatta agggctttgc aatgtgcttt
     7801 tgttatggat gaaatttcac attttgtacg caaaggttta aagcctgaaa atattgcagt
     7861 tataactcca gatgaaagtt tttgtgagtt tttaagactt tttgataaag acaatatgct
     7921 taactttgca agtggaatta gtattaaaga gagtttgttt tatcaaaaat ttcaagcact
     7981 ttatgaaagt gctagtagtg cttcttttgt ctataaaaat caagaggatt attttgaaga
     8041 cacgcggatg atgtttgatt atcacaatac gcttttacat tctttaaaac ttgattttat
     8101 agagtttaaa aagtattttg atgagaaatg tgattttgaa tattttgaaa aattacttgc
     8161 tttgttttta gaaaatgaaa agcaagagct tatttatttg atacgaaaag aactttattt
     8221 tattaaagat ttattgaaaa atcagtcttt aactcttaaa gagttgatcc atcttttttt
     8281 catgcaaatt tcacaacttt cccttagtga tgtaggtgga ggtaaggtta cggtaatggg
     8341 acttttagaa agtcgtgggc tttgttttga tggagtgatt ttggttgatt ttaatgaaga
     8401 atttattcct aaaagaagtg ttaatgagct ttttttaaac aatgaagtgc gtaaaaaagc
     8461 aggattgatt agctatgata gaagagaaaa tttacaaaga ttttattatg aaagcttgat
     8521 gaagaatgct ttagaagtaa gtatttgctt tgtggaaaat gaagaaaaaa gcaaatcacg
     8581 ttttttagat gaacttgatt ttgacttttt ttatgaaact catatccacc aaaaagctta
     8641 tcttaatgct ttaaaattag actatgaagg cataaaacct aatctaactc ctataaaagc
     8701 tcctatttta aagcataatc ctttcgagtt tccgctttct tttagtcgtt ttaatttatt
     8761 ggaaaatcaa aaaagaactt attattatcg ttatatttta aatttagcag aacctagggt
     8821 tttaagcgag gaaagcaaag cgaaaaatca aggaaatttt atccataaaa tgcttgaaat
     8881 ttattataaa aattatgcaa ataatgattt tgatataaac gtttttgcaa atttattgga
     8941 taaagaatat caaaaataca atatcagtga acttgatctt gaagtattta aattaaaatt
     9001 tatacaattt gctaaaaatg aaaaagagca tttttcaaaa ggcttttatg tcgcacatac
     9061 agagcttgag ttaaacaata ttttaaagct cggaacagat agtataaaac ttaagggtac
     9121 tatagatcgt atcgatagtt caaaagaagg taatttgatt attgattata aaagtggaaa
     9181 agtgccaagt aattcttatc aacttgcttt ttaccaagct ttatatgatg aaaatgcaag
     9241 cgtgggtttt tatgatttaa atagtatgca aatattgcat caaaaagcca aaagtttaga
     9301 tgagctaaga gaaagactta aagatttagt tcttatgagt aaggaagaaa tagagtttga
     9361 aaatgaacaa gatgagtatt gtccttataa actcatttat aaaaaggaat taaaatgagt
     9421 caatttgagc cttttttagc attagaagcg agtgcaggaa gcggaaaaac ctttgccctg
     9481 agtgtgcgtt ttgtagcact tattttaaaa ggagctagga ttaatgaaat tttagctttg
     9541 acttttacca aaaaagctgc taatgaaatg caaaaaagaa ttattgagac ttttttaaac
     9601 ttagaaaaag aaaataaaac cagtgaatgc aatgaacttt gcaagctttt aggtaaagat
     9661 aaagaagagc ttatttcttt aagagatgct aaaaaagaag aatttttaag aacagagtta
     9721 aaaatcagta cttttgatgc ttttttcgga aaaattttgc gtgtttttgc tttaaatttg
     9781 ggcttaagta gtgattttac aatgagtgaa gagaggcttg atgtaagaga gattttttta
     9841 aaacttctta aaaaagatga attaaaagat ttggcttatt atattaattt agttgatgag
     9901 aaagaaaatt tttttaacga gcttgaaaaa ttttatgaga atgcttattt tcaaaatcgt
     9961 cctaaaattc taaatccaac taaagcttat atcaataaag cttatagtga gttaagaagt
    10021 tattgtttgg gtcttactca tgtaaaaaat tataaaaatt tgtgtgacaa tttcaaaagt
    10081 gaagttttag atttatccgt gtttatgcaa tcaagtttta tgacaaaatt tgaaagtaca
    10141 aaatatttac aagatttaga aagtactaac ctgcatttta gtgcaaaaag aatggagctt
    10201 ataaatgctt taaataccta tgccatagag cttgaaaatt ataaaattgc taatttaatg
    10261 aatcttttaa atcattatag tgaagctaaa aatatatttc ataaagataa aaatacctta
    10321 aatttccaag atgtgagtaa aaaagtttat gagttaataa ccagtgaatt taaggatatg
    10381 atttattttc gtttagatgg ttttatttcg catttgctta ttgatgaatt tcaagataca
    10441 agcgtgatcc aatatcaaat tttacgccct ttgatcgctg agcttgtttc aggagaaggg
    10501 gttaagaaaa atcgcacttt tttttatgta ggagataaaa aacaaagtat ttatcgcttt
    10561 cgtaaaggaa aaaaagaatt atttgatttg ttaaaacaag aatttagtca aattaaaagt
    10621 gataatttaa atactaatta tcgttctaaa gagcttttgg ttgattttgt taatgaaact
    10681 tttaaagaaa aaatcaaaga ttataaagaa caatttgcct tagaaaataa aaaaggcggt
    10741 tttgtgcgta ttgtggagtc taaggaacaa aaggttaaaa accaagccca agaaattaag
    10801 gaaaagactt tagaaacttt atttgagcaa attaattttt taagatctaa aaatatttct
    10861 tatgatgata tttgtatttt gtgttggaaa aatagtgatg cagatatggt tttggatttt
    10921 ttaagagagc aaaatattcc tgcatttact caaagcaatg ttttacttga aaataaagca
    10981 agtgtaagac ttgttttaga atatgctaaa tattgtattt ttggtgatga gttttacttg
    11041 gtatttttaa aggaactttt aggttttgag ccgagaaaaa ttacccttga tttttcaaaa
    11101 aatgctatgg aaaatgtact ttttttaata aaagaattaa aacttgattt aaatgatatc
    11161 gctttaatac aatttatcga atatgctaaa actaaggaga attttttaaa gcttttattt
    11221 gagccttgtg ctttgaaaat agtaagcgaa caaaatatgg gaattagtat tatgagtgtg
    11281 cataaatcta agggtttgga atttgatcat gtgattttac ttgatagttt atctaaaaac
    11341 aattcaaaca atgaagatat catgcttgaa tatgatatca atcaaggttg gcaactccat
    11401 attaaagata aaattcgaga gcttactaaa gagcctattt atactctttt taaagaaaat
    11461 attacaagag caaattatga agatgatatt aataaacttt atgtggcttt tacaagagct
    11521 aaggaaagtt tgatcatcat aaaaagaaat gaagaaagtg taaatggaaa ttatccaagt
    11581 tattttaagg ggggattttt aaatatacat tctcaagaga gaggtttttt agaaagcaaa
    11641 gaacaaattt taagcgttaa aaaagaaagc attcaaactt tgcaaaaatt tgaaaaaatt
    11701 accttgcaag aaattcaaag tgaagaaagg cttgatagta aagaactata ttttggaaat
    11761 gcttttcact tttttatgca aaatttaaaa cttcctaagg gtgaaaattt tcaaatactt
    11821 actcaaagat gcaagagtaa atttagacat tttttagatg agagtgattt tgaaaagctt
    11881 tttaaaagaa ttgaaatttt acttaaaaat attcaatttc aaaatttgat tggtgatgga
    11941 aagcttttaa aagaacaagc tttgagtttt aatggagaaa ttaaacaatt agacttgctt
    12001 gctttaaaag atgaagaagc ttttataatt gattataaaa caggtcttgc tatgcaagat
    12061 aaacataaag agcaggtagg aacttataag atcgccatta gtgaaatttt gcaaaaagat
    12121 aaagtgcgtg cttttatagt ttattgtttg gaaaatgaaa ttcaaatttt ggaaatataa
    12181 actttatttt tacttaaatt aagtaaaaat taatattatt ttttatacaa tcacatttta
    12241 aatttttggc aaaggtaaaa attatgacaa agataacaaa gccaaacgaa gtaaaacgag
    12301 aatggattgt tttagacgca gaaggcaaac gctttggtcg tcttttaact gaagtagcaa
    12361 caattttgag aggtaaaaac aaaccttgct ttactccaaa tgttgattgt ggtgattatg
    12421 taattatcat caatgcttca aaagctgtat ttacaggtgc taataaagca gaagataagc
    12481 tttatcatag acattcagga tattttggaa gtgtaaaaag cgaaaaattt ggtgatttac
    12541 ttgaaaaaaa tcctgcaaaa ttatataaat tagcagttag aggtatgctt cctaaaacaa
    12601 atttgggcag agctatgctt aaaaaattaa aaatctatgc gggtagtgag cacccacaca
    12661 ctgcacaaat tgctaaagaa ggaaaataat catggcaaca acatacgcaa caggtaagag
    12721 aaaaactgct atcgcaaagg tatgggtaaa accaggtagt ggtaaaatta gtgttaatgg
    12781 tgttgattta aacacttggc ttggtggaca cgaggcgatt aagcttaaag tggttcaacc
    12841 tttacttgtg actaaacaag aaacttcaat ggatattaaa gcaactactt taggcggggg
    12901 ctatagtgct caagctgaag ctttaagaca tggaatttca agagctttag cagctatgga
    12961 tgctgatttt agagccttat taaaacctaa aggacttctt actagagata gtagaactgt
    13021 tgagcgtaaa aaatatggac gccgcaaagc aagaagaagc ccacaattct ctaaacgtta
    13081 atatttttgg tgggattttc ccacctttct acaatttttt ataaaactca tccttttttc
    13141 tatacattta tgttataatt gcaaaattta aatttttatt ttataacaca atgaaaggtt
    13201 ttttctatga aaaaaatatt cttatgttta ggtttggcaa gtgttttatt tggtgctgat
    13261 aacaatgtaa aatttgaaat cactccaact ttaaactata attactttga aggtaattta
    13321 gatatggata atcgttatgc accagggatt agacttggtt atcattttga cgatttttgg
    13381 cttgatcaat tagaatttgg gttagagcat tattctgatg ttaaatatac aaatacaaat
    13441 aaaactacag atattacaag aacttatttg agtgctatta aaggtattga tgtaggtgag
    13501 aaattttatt tctatggttt agcaggtgga ggatatgagg atttttcaaa tgctgcttat
    13561 gataataaaa gcggtggatt tggacattat ggcgcgggtg taaaattccg tcttagtgat
    13621 tctttggctt taagacttga aactagagat caaattaatt tcaatcatgc aaaccataat
    13681 tgggtttcaa ctttaggtat tagttttggt tttggtggca aaaaggaaaa agctgtagaa
    13741 gaagttgctg atactcgtgc aactccacaa gcaaaatgtc ctgttgaacc aagagaaggt
    13801 gctttgttag atgaaaatgg ttgcgaaaaa actatttctt tggaaggtca ttttggtttt
    13861 gataaaacta ctataaatcc aacttttcaa gaaaaaatca aagaaattgc aaaagtttta
    13921 gatgaaaatg aaagatatga tactattctt gaaggacata cagataatat cggttcaaga
    13981 gcttataatc aaaagctttc tgaaagacgt gctaaaagtg ttgctaatga acttgaaaaa
    14041 tatggtgtag aaaaaagtcg catcaaaaca gtaggttatg gtcaagataa tcctcgctca
    14101 agcaatgaca ctaaagaagg tagagcggat aatagaagag tggatgctaa atttatttta
    14161 agataatgaa taaaactatt ttatttgatt tagatggcac tttaattgat tctactgatg
    14221 ctattttaaa ttctttccaa ggagctttta aagcccttgg attaacttct aaaaataatg
    14281 aagaaatcaa aaatctcata ggttatcctt tagagcaaat gtttagaatg ctttatccag
    14341 ataaagtaaa tttaagtaaa gaatttgtat tagcttatcg tgaaatttat gcacaaattt
    14401 atttagaaca aaccactctt ttgcctaaag caaaagaagc attagaactt ggaagcgaaa
    14461 ttgcagatct tggtatagtt acaacaaaag gaggtaaatt tactccgatt ctgcttgatt
    14521 atttgggagt taaaaaattc tttaaaactt taattacttt tgaagatgtc acaaatccaa
    14581 agccaagttc cgaacctata attttagcct taaaaggact caataaaact caagaaaatg
    14641 cctatatgat aggcgataca atattagata ttcaagctgc aatttctgct aatatcactc
    14701 ctttggcctt aacttgtggc tatggcaatg aaaatgaatt aaaagctcat tctatggtat
    14761 ttttaaatgc atatgaggct gttaattata tagctagatt aaactaattt caagttttcg
    14821 ttaaacgcct tttaagagaa tttatagtaa attgatagtt aaaaaattat aaaaattatc
    14881 aatataaagg aaggtctcaa tgggtaaaat tatgaaaact atggacggaa atgaggctgc
    14941 tgcatacgct gcgtatgctt ttactgaagt tgctggaatt tatcctatta cacctagttc
    15001 tcctatggct gattataccg atatgtgggc agctgcagga aaaaaaaatc tttttggagt
    15061 tcctgtaaaa atcgtagaaa tgcaaagtga agcaggagct gcaggtagtg tgcatggatc
    15121 tttacaagct ggggctttga ctacaactta tacggcttct caaggattac tccttaaaat
    15181 tccaaatatg tataaaatag caggtcaatt actcccctgt gtaatccatg tagcagcgcg
    15241 ttctttggct gctcaagctt tgtctatctt tggtgatcat caagatattt atgcagcaag
    15301 acaaattggt tttgctatgc tttgttcgca ttctgtgcaa gaaaccatgg acttagctgg
    15361 tgtagcacat ttagctgcaa ttaagggaag agtgccattt ttacattttt ttgatggttt
    15421 tagaacaagc catgaaattc aaaaagttga agtaatggat tatgcgcatt ttgatagatt
    15481 attagataga gaagctttgc ttgaatttag aaataatgct ttaaatccag aaaatccaaa
    15541 aacacgtgga acagcacaaa atgatgatat ttattttcaa actagagaag taagcaatcg
    15601 tttttacaat gctttacctg atgttgttaa tgaatatatg caagaaattt caaaaattac
    15661 aggtagagaa tacaaaccat ttacttatta tggtcacaaa gagccagagt gtgtgattgt
    15721 tgctatgggt tctgtaactc aagcacttga agaagtggtg gactatctta atgccaaggg
    15781 tgaaaaggta gggattttaa aagtttatct ttatcgccca tttagtttaa aatatttctt
    15841 tgatgttatg ccaaaatcag tgaaaaaaat cgcggtttta gatagaacca aagaaccagg
    15901 aagtctcgga gaaccacttt atcttgatgt aaaatcagct ttctatggaa gagaaaatgc
    15961 tcctgttata gtgggtggaa gatacggact ttcttcaaag gatgttgatc ctgctcaaat
    16021 gatagcagta tttgaaaatc ttaaacttga taatccaaaa gatggcttta ctgtaggtat
    16081 aattgatgat gtaactcata cttcactgag tactggagag aaaatttcac ttggagatga
    16141 aagtacgatc gaatgtttat tttacggact tggtgctgat ggaactgtgg gcgcaaataa
    16201 aaactcgatt aaaatcatcg gagataaaac ggatttttac gctcaagctt attttgctta
    16261 tgattctaaa aaatcagggg gttatacaag aagccattta agattttcta aaaaacctat
    16321 ccgttcaact tatcttgttt caactccgca ttttatcgct tgttcggtag cggcttattt
    16381 ggaaatttat gatgttttag caggaattcg caaaggagga actttccttt taaatagtat
    16441 ttggaatgct gaagaaacca taagacaact tccagatgca gtaaagaaaa ctttagctga
    16501 aaaagaagta aatttttata tcatcaatgc aaccaaacta gctcgtgata taggtttggg
    16561 aaatcgtaca aataccatta tgcaatcagc ctttttcaaa cttgcaaaaa tcattcctta
    16621 tgaagacgca caaaaataca tgaaagagct tgcgtataaa tcttatagta aaaaaggcga
    16681 tgctattgta gaaatgaatt acaaggctat tgatgtgggt gctgatggac ttgtaaaagt
    16741 tgaagtggat ccaaattgga aaaatttaga gcttaaagaa aaagaacaaa ccaatgccta
    16801 taaaggtact gaatttgttg aaaaaatcgt aaaacctatg aatgcggcta agggtgatga
    16861 tttacctgtt tcagcctttt taggttatga agatggaagt tttgaacacg gcacaaccga
    16921 atacgaaaaa cgcggtgttg gggttatggt accaagatgg atagaggcaa attgtatcca
    16981 atgtaatcaa tgtgcttcag tttgtccgca tgctgttatc aggccatttt tgattaatga
    17041 tgaagaaatg gcaaatgcac ctcgcggtgt aaaagatcat gctttagaag ctaaaggaac
    17101 caaaggagaa aaattaagct ttaaaattca agtttctcca cttgattgta caggctgtga
    17161 gctttgtgtt catgagtgtc ctactaaaga aaaatctttg gttatggtac cacttcaaga
    17221 agagatggat tttggtgagc aagaaaatgc ggattattta tttaaagaaa tcacatacaa
    17281 agatgatatt ttaaataaag aagctacaaa aggagcacaa tttgcccaac ctttatttga
    17341 attccatgga gcttgtcctg gatgtggaga aactccttat attactttaa ttacaagatt
    17401 gttcggtgaa agaatgattg tggctaatgc tacaggttgt agttctattt atgggggttc
    17461 agctccatca actccttata gaaaaagtgt gaaaaatgga catggtcctg cttggggaaa
    17521 ttcacttttt gaagacaatg ctgagtttgg tttgggtatg aaaattgcaa ctgaaaacac
    17581 aagacaccgc attgaacata tcatgaatga gagtatgcaa gaagttccaa atgctttatc
    17641 agcccttttt aaagattgga ttgcaaataa agacaatggt gctatgtctg tggaaattaa
    17701 agataaaatg atccctattt tagagcaaaa taaaaatatt aaagctgtac aagatatatt
    17761 agagcttaaa cagtatttaa gtaaaaaatc tcactggatt tttggtggtg atggttgggc
    17821 ttatgatata ggctatggcg gacttgatca tgttttagca agtggagaaa atgtaaatat
    17881 tttagtgctt gatacagaag tttattctaa tacaggcggt caaagttcaa aatcttctag
    17941 aacaggagct gtagcacagt ttgcagcagc aggcaaacct atacagaaaa aagatctagg
    18001 tcaaattgct atgacttatg gttatatttt tgtagcacaa gtaaattcaa cggcaaatta
    18061 tactcatctt atcaaagcta tcactgcagc tgaggcctat aatggaccat ctttggtgat
    18121 ttgttattct ccttgtatag ctcatggtat taaaggtggg ctgggttact caggagagca
    18181 aggtgagctt gctacaaaat gtggttattg gccactttat acctttgatc ctcgtttaga
    18241 agagcaagga aaaaatcctt taactctaac aggaaaagaa cctgattggg atttatatga
    18301 gcaatttttg atgaatgaag tgcgttataa ttcacttaaa aaagcaaatc ctgaacacgc
    18361 tgctgagctt tttgaacgca ataaaaaaga cgctcaacgt cgctatagac agcttaagcg
    18421 tatcgctatg gctgattata gcaatgaggt tgaaagctga taaaatatat ttttagtgct
    18481 acattgtgtt ttagcacttt gtttgcacaa gataattttg aagagtattt taaacttata
    18541 gataaagaaa atcgtataaa ttttaatact cttcaaaacc catttgtgaa tcctactttt
    18601 gaaaaattaa gacatattaa aattactgca attatgcttg ataaagtaaa aatttatgat
    18661 cgatggtata aaaaaggtga tatgattgat gatgctataa tatatgaaat aaatactaaa
    18721 gagattaaat tccaatatga taatttagaa attgcaatcc aaataaataa aaatgataag
    18781 attaatatta attaacattc ttttttgcca ttatctttat gctttagatt gtcaaaagcg
    18841 tctttttgat atcagtatta atgaaaaatt aagcatacaa gaaagtcttg atgagcttgc
    18901 aaaatattgt tcttttagta ttattgttaa agataaaatt gccaaagaaa aattagaaat
    18961 attgcaaaac tctgtcaata ttcatcaaat gagtttagac gaaattttta atttttttat
    19021 caaagagcat gatcttagct atgattttga tggtaaaatt ttaagaattt caggcattaa
    19081 tacgaagatt tttaagataa gttatatcac ttctatcaga gaaggacaaa gcataactaa
    19141 agcgtctgta gacgctaaac caaggcaaag tgaatatagc ggtagttttg atgacgcaga
    19201 agacaatatg attaaaagta tggaaaaatt tgatttttgg caaaatatag aaaaagagat
    19261 tattgtatta ttaaaaaatt ctcatgaaga ttatgaggct aaaactccca ttataaatcc
    19321 caatgcaggt cttattatag taactggaac aaattctcag ttaaaaagtg tgaaaaatta
    19381 tttgcaaaaa ctagaaaatc gtcttaaaaa acaagttatt atcgatgtta gcatacttgc
    19441 tgtgagttta aatgaaagcc attctagtgg gattaattgg caaaatttta atataggttt
    19501 aaattcgcaa gtaaataatg aaaattcttt tattcagttt caaaatgggc aaggttttgt
    19561 taagaatttg ggtttaaggg cgaatttaaa ttttgattct attattaact ttctttctca
    19621 aaatggaaaa actagcgtgc tttctaatcc aaagcttatg gctttaaata accaacaagc
    19681 cattatttct gtaggtgata ctataaatta tcaagttaaa gaaagttcta aaggcactga
    19741 aaatgggact actgttagtg aaagttataa caattattct atttttgtag gcattttact
    19801 caatatcttg cctgaaattt ctgatgatgg aaaaataatg ctcaggatta atccaagctt
    19861 aagtgatttt aagtatccag aagataataa acgacaaaaa gaaccaagaa ctattgctcc
    19921 tgataccata caaaaaaagc tttctagtgt tgtgcaagta gagaataatc aaactttaat
    19981 tttaggtgga ttgatttctc acgataaatc taatgagaaa aattctatca attttctatc
    20041 aaaaattcca atcctaggtt ctttgtttaa aggagaagtt ttaaattcta aagcaactga
    20101 aattgttttt attatcactc caagtatagt agatagtgta aatgctccaa gtcttaaaga
    20161 tctaggattt aagcattatg agtaaaatta ttccatttag agaagaaatt tttcatcaaa
    20221 tcaatcaaat tttagaaagc caaaaagctt ttattttttt atggggaaaa agtggtagtg
    20281 gtaaaagtgt attgttgcaa agattggcaa aaaaatataa tgttgatttt attaatgaaa
    20341 attttaaaga tcagagtttc ttaaaagaaa aaattgagtt tttgatttca caaggtcaga
    20401 gtttaatcat tcttgatgaa gtgggaatgt atgattatgc aatgctagaa agcatcagga
    20461 tttatagtga ttctataagt tttgttttaa gttctcataa aaagttaaat atacttaaaa
    20521 aagagcattt taaaagtcgt ttaagtgctt gttttaaatt ga
//
LOCUS       DARBBO010000020        20311 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.020, whole genome shotgun sequence.
ACCESSION   DARBBO010000020 DARBBO010000000
VERSION     DARBBO010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20311
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.020"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(24..743)
                     /gene="kdsB"
                     /locus_tag="SB854_000586"
     CDS             complement(24..743)
                     /gene="kdsB"
                     /locus_tag="SB854_000586"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HEG0956620.1"
                     /translation="MIIIPARLKSSRFHEKILCDVGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKNHESGTDRINETCKKLALKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMASCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLSSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYERALKIYLEK"
     gene            complement(740..2152)
                     /locus_tag="SB854_000587"
     CDS             complement(740..2152)
                     /locus_tag="SB854_000587"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEG0956621.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLNEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNKIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNVNNILSEFFNHGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEAKNIKKEILDWMQK"
     gene            complement(2149..3075)
                     /locus_tag="SB854_000588"
     CDS             complement(2149..3075)
                     /locus_tag="SB854_000588"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HEG0956622.1"
                     /translation="MNEEKNYELWLDNYFFKPNFWQKCLAFILLPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLTQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFNFTLPSGAYRLPKFYEKRADFIALEGRDFVRYSFVKENPKAV
                     LVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            complement(3079..3819)
                     /locus_tag="SB854_000589"
     CDS             complement(3079..3819)
                     /locus_tag="SB854_000589"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HEG0956623.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYTKIDEGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            3893..4489
                     /locus_tag="SB854_000590"
     CDS             3893..4489
                     /locus_tag="SB854_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG0956624.1"
                     /translation="MQIIKQACGVYETNCYILFTPKGEFIIDPGTDALLFIKKHVKNP
                     LAILNTHGHYDHIWDNAKVKKEYNIPIYIHKNDAFMLHDDFNQGYDSSDADFLVDNED
                     ILNICGVDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            4501..4806
                     /locus_tag="SB854_000591"
     CDS             4501..4806
                     /locus_tag="SB854_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956625.1"
                     /translation="MELDQILLYAFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFVGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(4847..5626)
                     /locus_tag="SB854_000592"
     CDS             complement(4847..5626)
                     /locus_tag="SB854_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HEG0956626.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(5626..6522)
                     /locus_tag="SB854_000593"
     CDS             complement(5626..6522)
                     /locus_tag="SB854_000593"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEG0956627.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            complement(6515..7765)
                     /locus_tag="SB854_000594"
     CDS             complement(6515..7765)
                     /locus_tag="SB854_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG0956628.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTI
                     PKIHTKEPKQDGVKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            complement(7762..8820)
                     /locus_tag="SB854_000595"
     CDS             complement(7762..8820)
                     /locus_tag="SB854_000595"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HEG0956629.1"
                     /translation="MAYEMIKLLLFKLNPEHAHALVEYSLRALSASFPGALSFLAHKY
                     IVDDESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VAKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            complement(8852..10594)
                     /locus_tag="SB854_000596"
     CDS             complement(8852..10594)
                     /locus_tag="SB854_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0956630.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            complement(10587..11975)
                     /locus_tag="SB854_000597"
     CDS             complement(10587..11975)
                     /locus_tag="SB854_000597"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEG0956631.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNVSKALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDATLYFQWGVSKEEREEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLD
                     TPNGTIWEKINA"
     gene            complement(11975..13426)
                     /gene="murJ"
                     /locus_tag="SB854_000598"
     CDS             complement(11975..13426)
                     /gene="murJ"
                     /locus_tag="SB854_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HEG0956632.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFS
                     SFFTKLFAFGFNADTIALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKNAPQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMTLSIKF
                     KKTKAKLQGFYGNFFHGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSDQENLALKFMQRALALLSILLIASSIVGSVFALEISKL
                     LFERGNFTHEDSVITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLII
                     SALCSMAFIFLIKDESLKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLV
                     IVALIVFTILLILIKPYILSFFIGIFTSFKGVF"
     gene            13530..15389
                     /locus_tag="SB854_000599"
     CDS             13530..15389
                     /locus_tag="SB854_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG0956633.1"
                     /translation="MALDEKIIAYTENPARELLSVASRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKKLMSFCNQYKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIVVDENEVVLKHV
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDKNYDE
                     EFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPVQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFCSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            15365..15916
                     /gene="ruvA"
                     /locus_tag="SB854_000600"
     CDS             15365..15916
                     /gene="ruvA"
                     /locus_tag="SB854_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEG0956634.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSNDKSEALAALLTLGFKQEKII
                     SVLVSAQATGTSELIKEALKKLG"
     gene            15926..16966
                     /locus_tag="SB854_000601"
     CDS             15926..16966
                     /locus_tag="SB854_000601"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEG0956635.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTILRKNQNSKEKLS
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFNTTLNALADQISLEKMIKINYN
                     FLHSINGQKGKL"
     gene            17026..17241
                     /locus_tag="SB854_000602"
     CDS             17026..17241
                     /locus_tag="SB854_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HEG0956636.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSENGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            17243..17962
                     /locus_tag="SB854_000603"
     CDS             17243..17962
                     /locus_tag="SB854_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEG0956637.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGADKKLMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPIMYETFKKVVDEDFSEIFAKQKAKSLIFWGKSDEATPLYCGEKMHQFLKNSTFYPL
                     EGDHFFFLKHSAFIAQKIKEI"
     gene            17963..19390
                     /locus_tag="SB854_000604"
     CDS             17963..19390
                     /locus_tag="SB854_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEG0956638.1"
                     /translation="MLINTLYFINSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLVYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNTIFTILALRFSFLFNLFSLPFALLSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINANLSQDTQIYIAEAGAR
                     LKGDIDEITHFLQPQISIVGEIGNVHLEYFKSVENIRSTKLEALNSERLEKAFLHSST
                     QKEEDKLISLYDDKLSLIHSSLEGLEFKVDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(19448..>20311)
                     /locus_tag="SB854_000605"
     CDS             complement(19448..>20311)
                     /locus_tag="SB854_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956639.1"
                     /translation="ERKAENNSYTSDIKKYLGIDKYYTNIDMAETIKQYYNQFNQIVN
                     YAFNDTNKTSFTEADINSMPKGISELSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAE
                     QLGMFGHINIGLQPLNFTPQSMQTQNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFM
                     SFLKSTGVSPREGSATLNPIAKSYAEAMAKESFDGSLASLDDIMTGKVDFASLLKGYA
                     QEGWLDADIYAMDKGVAWQNTSIGYGGAWFDREFNQVKANGWKASSESINSYVGSIMD
                     RLNNLMGQTRV"
BASE COUNT         7262 a         3448 c         2606 g         6995 t
ORIGIN      
        1 atttgttccg ttttggggtg gagttatttt tctaaataaa tttttaaagc cctttcatag
       61 tcttctttag tatcaatccc catgcttgtt gttgaaattt caagcatttt gattttttta
      121 ccattttcta tagctcttaa ttgctctaat ttttccgctc tttcaagtgc agaactcgat
      181 aaagaacaaa actctcttaa agcttttaca ctataagcgt aaatgcctaa atgcccttta
      241 aaactttcct cgtaattttc tctttcataa ggaattttag ctcttgaaaa atacaaagca
      301 tacccttctt tatcgcaaag cactttaacc agattaggat ccatagcttc ttcttgagtg
      361 atttttttat aacaactcgc cataaaagct tttttatcca agcaagaact tgcaaattct
      421 ttaaatttta ataaattttc acattctata aaaggctcat cagcttggac attgataata
      481 atctcatcat cttttaaagc tagtttctta caagtttcat taatcctatc cgtaccgctt
      541 tcatgatttt tgcttgttaa aactgcattt aaaccatatt ctttagcgat acttaaaacc
      601 ttttcatcat ctaaagctat acaaacttca tccacactac ttacccttct tgcagtagcc
      661 acaaacatag gcactccacc tacatcacat aaaattttct catgaaaacg acttgatttt
      721 aatcttgcag gaataataat catttttgca tccaatctaa aatttctttt tttatatttt
      781 tggcttcaaa taccttttca tcgctatttt tcaagtcaaa taaagccaaa atttcatctt
      841 taacttggac attaaactct ttagctataa attttaaatc ttctttttca ttcttagaat
      901 ccctatcgta taaagctttt atcatacttg gagtaaattt tgtccattct gctgtagagg
      961 taataatgct aggttttaaa ggatcaagca ttttaaaaca agttgcggtg tgcggatcga
     1021 ttaaaatctt gctttgtttg ataaattgca tacattcttc atcggtgcaa aaatccgcct
     1081 caaaatcttc ttgtaaactt tgcaattctt ctttttcaag tttaaaatat ctctcatttt
     1141 tcaacaaatt catcagttct ttggttcttt tatctttaaa tttcgcaaac aaaagtcttt
     1201 cgatattaga tgaaataagt atatccatag ctggagaaat agtcttctta agactttttt
     1261 cacgcaaatc ataaacgcca tgattaaaaa attcactcaa aatattattc acatttgaag
     1321 cgattttgat ttttgaaatt ttagctccca tttttttagc ataaaaagct cctaaagcat
     1381 tgccaaaatt tccacttgga acaatgattt gtacttcttc taaaaactca ttaaaaagtt
     1441 ttaaactcgc ataataatga taaataatct gaaataaaat acgcccaaaa tttacagaat
     1501 tcgctgcgca aagctcataa tttaaagctt taattttgtt ttgaaaatct tttgaaaaaa
     1561 gcaattcttt taaagtgcgt tgcgctgcgt caaaatcctc atctatagca aaaactttca
     1621 aattatcctt atctaaagct cgcatttgca actcttgaac tccacttgtg ccaccttttg
     1681 gatacataca agctacttta acattttttg cattttcaaa gctttttagg gttgcaggtc
     1741 ctgtatcgcc gctcgtagca caaataatta aaatattttt atcctttgaa aattcgttta
     1801 aaagcacgcc aaaaggctgt aaagccatat ctttaaaagc tcttgtaggc ccatgccaaa
     1861 gctcgttaat ataggttttt tcagagattt tttgcaaaga aataggtgta tttttatcat
     1921 caaagctttc gtaacttttc aaagcctttt taaaaagctc ttcttcgcca aaaccaaaac
     1981 tttctataag ctttaaagca aaatctttat aagacaaatt ggcatatttt tctccttcaa
     2041 aaataggcaa atttaaaggt gagtaaagcc ctccttccgg ggcgtttggg ttaatcaaag
     2101 cttccttaaa acttgataca ttatttacat ttctactctc gactaatttc attgctcaaa
     2161 ctccttgata taagttttta ttttttccct taatgaatct tttaattcta tatttaattc
     2221 tataatttga catttaaaac caaaatcttt aactttaaca aaatccttaa aagtaagcat
     2281 tagtgtatcg caattatgtt tttttagcaa attttctaat tcttcttttt taaactcata
     2341 atgatcttta aaaaaataac aagcccttgc tttgataaaa tgctcataca atctaaaagg
     2401 tttagcaata gcagttacta aaacagcctt tggattttct tttacaaaag aataacgcac
     2461 aaaatccctg ccttctaatg caataaaatc agcccttttt tcataaaatt tcggcaaacg
     2521 ataagctcca cttggtaagg taaaattaaa ataaggtttg attttacttt caagtaaaat
     2581 atcaaatttt ttaatatgaa atttagaaaa agcatcatca agcacaacga ttttagctcc
     2641 caattcaaaa gctttttcaa taccttttac tctatcttcg ctcacaatca cacctttgat
     2701 attttcttca aaagcatact ccatagcttc atcgccactt tgtgttaagg tgcataaaat
     2761 ttcattttga tttttaacaa caaacaaacc tttagacttt cttttatagc ccctaagtac
     2821 tataaaaaca ccatcaaatt cccttgctat agctttacaa agcggggttt ttccattacc
     2881 tccaaaactt aaattaccaa cgctaataac aggcttttta aaaactattt ttttacgaaa
     2941 aaaagtattt aaaatcgcaa aaaaagcata aagcacactt aaaggtaaaa gtataaaagc
     3001 aaggcatttt tgccaaaaat tgggcttaaa aaaataatta tcaagccaaa gttcataatt
     3061 tttttcttca ttcattgttt aaatttccaa aatttcaggc atttttccct taaaagcatt
     3121 tttttgcatg cgatttttta acatagcaat caaagaagga tcaagtgttc ttaaaagttt
     3181 ttcatcatta gtttctaaag cttttaaacc ttcatcgatt tttgtataag aaaaacctaa
     3241 atccgcctca tcactttgat tttcccaaag atccgcactt ggagcttttt tgatgaaatt
     3301 ttcatgcaag ttaaggtatt ttgctaaggc ataaatttca cttttataaa gcgatcctat
     3361 aggattaaaa gcacaagcta aatccccata aatcgtacca taacctaaaa gcaattcgct
     3421 tttattagaa gtgcctatga ctaaagaatt tttcaaagca gaataatcat aaagcaaact
     3481 cattctaata cgcgctgcaa aatttcccaa agatactaga gtggtatttt cactttgctt
     3541 tataaaagca tctaaaatgc tttgaatttc tatgatttta tattcaagat ttaaatccgc
     3601 acaaagcctt aaagcatctt caagattggc tttgtttgaa atttgagttg gcattaaaag
     3661 agcaaaaaca ttctctttta aagctctttt acaaagcgtt gctactaaag cagaatcaat
     3721 cccgccacta agccccaaaa ccacaccttg actttgagaa tttttcactt tttcttgtat
     3781 aaaatcacac attttttccg taatcttttg ccaatccata aagcttgcct tttaaaaatt
     3841 taatgtataa ttatatttat ttaaggcaaa ttttttatta aagaggcaaa aaatgcaaat
     3901 tatcaaacaa gcttgtggag tttatgaaac taattgctat attttattta ccccaaaggg
     3961 tgaatttatc attgatccag gaactgatgc acttttattt atcaaaaaac atgtaaaaaa
     4021 tcctttggcg attttaaata ctcacgggca ttatgatcat atttgggata atgccaaggt
     4081 taaaaaagaa tacaacatcc ctatttatat tcataaaaat gatgctttta tgctacatga
     4141 tgattttaat caaggctatg attctagcga tgcggatttt ttagtagata atgaagatat
     4201 tttaaatatt tgcggagttg attttaaatt tcacttttta ccaggacaca caccaggttg
     4261 cactatgata gaaattgtag gtaaaaatat catgtttagt ggagattttt tattttatag
     4321 aagcatagga agatgggatt ttccttattc agatgcaaat ttaatgaaac aaagcttaga
     4381 aaaagttatg acttacaaag aagattttaa acttttacca ggacatggac aagagactac
     4441 tttaaaagaa gagcaagtcc atctaccctc ttggcttaga tacttttaag gtatattaaa
     4501 atggaattag atcaaatttt attatatgct tttatttttt taaatctttt tgcccttttt
     4561 ggtttatttt taggaaataa aaagaaaaat caatttaacg ataaaaaatt ttataaaatc
     4621 tgcccatgta aaaaaatggc agaaaatgga tctttaagta cgatttgtat ttattcagct
     4681 gtgggaggat ttttttacag cgtattatct ataggttttg taggttttgg taattggact
     4741 ttaaatttta tttttttact tgcattatta agtgtttttt tagggtggaa attaaaactt
     4801 gattgaaaaa tatttttaag aaaaatccat tgatttttct taatttttat ttaaaagttg
     4861 taccaccatc aacgatgaaa gtatgtcctg taacccaact tgccttactt gaacaaagaa
     4921 aaagacatgc tccagccaaa tcttcaggct gccccatgcg atttaaaggg cttaaattta
     4981 tagtagcctg ttttacttct tcataatttg taaaagctct taaagcatca gtttcaatag
     5041 gcccaccact tacgacattt acacggatat ttttttctcc aagttcagta gccgcatatc
     5101 ttgccatagc ttctacagcg gcttttgctg taccatgacc tgaataattt tctatataca
     5161 ctaaatttcc tgtagatgag atagaaataa tgcttccacc ccctactttt tccatccttt
     5221 tagctgcttc ttgtgcgccc acaacaaaag catttactgt ggctgtaaaa atgttattaa
     5281 ttccctttgg ttttaacttc ataaatttgg tatagccacc tacaaccgca cgtcctgaaa
     5341 tgatagcatt tgagataaaa taatccactc tatcaaaatc cacatcaatt ttttcaaaaa
     5401 gttctttata ggtttcaggt tctaagatat taaattcata agctctagct ttgattttat
     5461 aatttttctc caaatcttga accatttcat cagcaatttg cgcattagaa ttataagtaa
     5521 aagctatatt tgcacccact ttagcaaatt cataaactat agctttgcct atcccgcgag
     5581 ttccaccgct aatcactaaa gtttttcctt gaaattctgt attcattaaa atcctttgat
     5641 cttatatttt ttcatcactt cttcaatttt agcaaaattt tccttacttg gagaacaaag
     5701 aggaagtcta aattccaaac tttctatcaa tccagctaaa tacatagccg ttttaatagg
     5761 aataggatta ctttcgcaaa ataaaatttt attgatatta taaagctcat cattgatttt
     5821 tttagcttct ttataatttt catctaaagc aaaatgagtt aaagcgctaa tcatatcggg
     5881 taataaattt gaagttactg aaatcacccc ctttccacca tttgaaagta taggataatt
     5941 gatcgcatct tcccctgaaa taagcatcat tctaggttcg tgtgcaagca aatccacaca
     6001 cttatcgata tttccactcg cttcttttac tccataaata ttttcacaat ctctaaaaag
     6061 cttgataata gtatccgttg aaatttcaca acctgttctt cctggaacat tatataaaag
     6121 cacaggaata tctacacttt gcgcaatagc cttataatgc tcgtaaagtc cttgttgcgt
     6181 aggtttatta taatacggtg ccacacttaa aatcccatca gcaccatgct ctttagcaaa
     6241 tttagccaaa cccactgcct catgagttgc attacttccc gcacctgcta aaaccttaac
     6301 tttagttcct ttacaagtct caacggctat ttctatgcaa gttctatgtt cttcatgggt
     6361 taaagttgca ctttctcctg ttgttcctac tggaactact gcatcgatgc cattttctat
     6421 ttgtctttta atcaatcttg cataactttg ctcatcaact tttccatttt taaatggtgt
     6481 aataagagcc gtcatcgccc caatgataat atttttatcc atttgaatcc tttcttagaa
     6541 ttaccgtagt tgaattttct tgaataaaat attttttagc acaagaaatc aaatctttta
     6601 attccaaatt ttgtatatct ttctcataat ttaacaaagg attgatatct cctcttgcta
     6661 gatatgaacc ataaatattt gccactgcac tagcattgtt aagtgagaaa ataaaatcac
     6721 ttttgacatt atttttcact ctttgcaaat ctttttgaga aattttaccc attttaagtt
     6781 tatcaatgat ttttaaaagc tctttttcta ctttttctgc attaacattg gggttacaat
     6841 tacaaataaa aataaataaa ttttcatcta tacaatcatt aacataagca taataatcat
     6901 tgattaaatt taatttatca atcaaaattt cactcattaa agaacttttc ccacttccta
     6961 aaagctcgga taaagcattt aaagcaggta tatctttgtg cttgaaattt ggaattttat
     7021 aagcaagggc taatagttca gtatctgagt ttttatgtaa atatattctt tttactccat
     7081 cttgcttagg ctcttttgtg tgaattttag gtatagtctt agtattttta atcttttcaa
     7141 aatgtttttt tgaaagctca aaaacttcct tactttctat atcgccactt acaagtaaaa
     7201 tcgcattttt aggttgataa taaatactgt gaaattcttt aatatcttca atactccaat
     7261 tttctatatc cttaaaaaaa cctataggag tccaatgata aggatgatac ataaatgcat
     7321 gattaaaaag cctaaaataa agatatccta aagggttatt atctgttctc catctacgct
     7381 cttctaaaac cactgctctt tcaggctgaa attcttcatc ttttaaattt aaattcgcca
     7441 taagttctgc aaaaagctct aaagctttat ctaaattttt cttcgcacat ttaatataat
     7501 aatgagtata gtcaaaacct gtgcttgcat tatccacacc accaaaaccc ttaacaatct
     7561 catcaaattc gccagctttt aaatttttag tacttttaaa atttaaatgt tctaacatat
     7621 gagctatgcc actttttccc atgatctcat ttcttgaacc cactttataa aaaatatcaa
     7681 cgctaatcac atcgctattt ttatttacag gcaaagcata aacttcaagc ttgtttttta
     7741 attgaatttt ttcataagca atcattttaa atttacccca acagcttcgc taatgtgtaa
     7801 aaaaccatct tttcttaaaa gctctataag attttgattg atatttttta ccaaagaagg
     7861 acctttaaaa atcaaagctg tataaacttg caccaaatta gccccatttt taatacgctc
     7921 ataagcaata tcagcactat caatccctcc acttgcaata agcaaggttt tgccaaaaag
     7981 aattttagct acttctttga aaaaaatacc acttttttcc gtaatcagtc ttccactaat
     8041 accaccaaaa gtacgattat tatctaataa actataatca acactagtat tggctaatat
     8101 aaacccatct gcaccttttt taatggcatt ttcacataaa tttaaagcat catctatttt
     8161 catatcagga gcaattttta tcaaaatagg cttagaagtg atttttttgg cttcttcaag
     8221 caaggtattt aaaaaatcat cattttgcaa ctctcttaaa tttttagtat taggagatga
     8281 gatattaacg ataaaataat cacacaaatc cttaaaatct ctaaacaaag taaaataatc
     8341 ctccaaggct ttatcatttg gagtgatttt atttttccct atatttaccc ctaaaggcaa
     8401 aacaaaagga taggtttttg caagtcttaa agcaatcttt tcagcacctt cgttgttaaa
     8461 acccatagca ttttgtatac tttcttgttt tacaagtcta aatagacgtg gcttttcatt
     8521 gccttcttga ggttttggag taaaagttcc cacttctaaa aagccaaatc ctaaagcact
     8581 caaaggtctt atcatagtgg catttttatc aaagcctcct gctaaaccta caggattatt
     8641 aaaatcaagt ccaagtaaat tttgccttaa actctcatca tcaactatat atttgtgtgc
     8701 taaaaaactt aaagctcctg gaaaactggc acttaaagcc cttaagctat attcaaccaa
     8761 agcatgtgca tgctcagggt ttaacttaaa aagtaaaagt tttatcattt cataagccat
     8821 tttttaatcc tttttgaaat tctaactaaa attaactaaa gctgggcttt gttttttctt
     8881 tgcttttaaa tttttgatac aaagaacaag tttgcaaaag ctcttcatct ttacctattg
     8941 ccaatacctt acccttatcc aatactacta ttttatccgc attttctata gtgcttaaac
     9001 gatgtgcaac cactaaaatc aatctatctt gttttaaatt ttctatagtt ttaactattg
     9061 ctttttcact ttcattatcc aaagctgaag ttgcttcatc aaaaataagc acatcaggat
     9121 ttttatataa agctctagcg attgctattc tttgtttttg ccctccactt aagttcttac
     9181 catgttcttt cacttcagcc caaatcccgc ccatttcttt aacaaattca taagcattgg
     9241 ccaattttaa agcttggatg actttttctt cttctaactc ttcgctataa gcaatatttg
     9301 cagcaaaact atcattaaaa agataaatat tttgcgttac aagtcctatt ttagcatgta
     9361 agctttctat ggtaaaagtg ctaatatctt cttgattgag taaaatttta cctttttgct
     9421 tttcataaaa atacatcaaa agattaataa tagaagattt accaccccca cttgtcccta
     9481 caagagcaag catttgccct ttaacaaaat caaaatttac gccttttaaa acacttttat
     9541 gcgggttttc ataagcaaat tcaacatttt caaagctaat tttttcaatg ttttttaatt
     9601 ctttgcttcc acctttaatt tgaggttcta aatccaataa ataaaaagtt ctttcacttg
     9661 ccgcaacagc accttgaagt tttccatata aagacgaaag acgctttaaa ggagtatata
     9721 tcgcaaaaag tgccgaaaca aaactgataa aacttcccac actcatagaa ccattgataa
     9781 cctctctacc ccctacaata atcaccacag caaccccaac agaacccatc atatccatta
     9841 aaggacttgt aagtgcatca atacgtgcgg attttaggtt taatttacat aaagtatcat
     9901 tatgcttagc aaatttatca ctttcttttt tttcattatc attagctttg atcaattcaa
     9961 tatttgaaaa aatttcaccc aaataagaaa gtaaatccga atttgtttct tgtatatttc
    10021 ttgcatattt tttaagtttt ttagcaaacc ataccaaagg aaaaatagct aaaggcaaaa
    10081 tcactaaagc aaaaaaagcc aaagtaggac tttgatacaa gactaccgca agcagtccta
    10141 tagcagttaa aagctctcta aaaaaatcag gaataatgtt tgatactatg ctttgaagtg
    10201 cattaatatc attagtacaa cgacttacaa gctctccgct tctatagcgt ttaaaaaaat
    10261 ccatatccaa gcgtaaaaca ttttttaaaa ccctagcacg caatactctt aacatatctg
    10321 ttcctataaa ggaaacataa aaactttgta aataagttcc aagattttta aaaaaataca
    10381 tcaatactag caaaaaaggt actgtataaa gtaaagcttc atttttttca acgaaaatat
    10441 aatttaaaat aggctctaaa gcataaaaac ttccagcagt tcctccgctt gctaaaatca
    10501 taccaaaaat agctatagca aattgtttcc aatatctttt ataaaagggc ttaaagcgta
    10561 ttaaaacctc ttttaaattc atctcattat gcatttattt tctcccaaat tgttccattt
    10621 ggagtatcta aaagagtgat ttttttacta tttaattgct ctcttattgc atcagctgtg
    10681 ttaaaatctt tgtttttctt agcctcagtt ctttctaaaa ttaacttttc aatctcttct
    10741 cgttcttctt tgcttacacc ccattgaaaa tataaagttg catccataaa accaaagcca
    10801 aaaattttag ctagctcact taaagcttct ttgatatttt gttttaaaat tttatttttg
    10861 ctttctttat ccaactctaa atttgcacta ctgataaaat catccaaaag agctaaggct
    10921 ttagaaacat ttaaatcatc atttaaaatc tctaaaattt gcttagcaat ttcgcttttt
    10981 atttcaatat catttaaaac atcaaaatca gaaatttcac ctaaatccaa tcttttttta
    11041 aggcgataaa atttatctaa acgtttttta gcattttcta aatccgataa agaataatta
    11101 aaatgagatc tataatgaga actcaaaaga taaaatctta aagcctcgcc cataaattct
    11161 tttaaagcat cttttataaa aaaactatta tttaaacttt tactcatttt ttcgccatcg
    11221 atttttacaa aaccattgtg aagccaaata tttgctaatt ttctcttaca tccacaacga
    11281 cattgcgcag cttcattttc atgatgagga aaaagcaaat ctatccctcc agcatgtata
    11341 tcaagagtat tttcaaaaat agaatcaatc atagcaacac attcagtatg ccaacctgga
    11401 cgccctttgc caaattcact ttcgtaaaaa ttttcatcaa atttccaaag cacaaaatcg
    11461 ctttcatttc ttttttgcac ttcattactt agacgagaga tattttcttc taaattgcga
    11521 tttgataggc ttaaatattt ttcatcttta cttgtatcaa aataaattcc atcttctaga
    11581 gtataaacaa acccatcctt agcaagcttt ttaatcaaat caagcatagc tgttatataa
    11641 tgcgttgcac gaggtttaaa atcaggatct aatacattta aaaccctcat atcctcttca
    11701 taacttttga tataaaattc cgtaatttcc tctaaagttt gaccactttg agccattttt
    11761 ttcaaaatct tatcatcaat atctgtataa tttctagcaa attttaccct attgccttga
    11821 gcaagtaaaa ccctacgcaa aagatcaaaa caaacactac ttcttgcatg tcctaaatgt
    11881 gcatcatcat aaaccgtagg tccgcataaa taaatactaa tatctttttt atcaagtttt
    11941 attttctctt ttgttacact atctaataat ctcattaaaa aactccttta aaacttgtaa
    12001 aaattcctat aaaaaaactt aaaatataag gtttaatcaa aataagtaag atcgtaaaaa
    12061 caatcaaagc aactataacc aataagcaaa ttttaataga tattaaagca aaaaatttct
    12121 taaaaccaaa ttctttgata ttagctccaa gcaaataaaa agcactaata gagcttgaaa
    12181 gtgctactgc aataaccttt aaactttcat ctttaatcaa aaatataaaa gccatagaac
    12241 ataaagcact gataattaaa gattttaccg cgatccaagc tgctgttttt tgtttaaatt
    12301 ttgcataaag ccacaaagaa aaaagctttt gcaaaccaaa aggtaaaagc cctataagat
    12361 aagcaatcaa aacataagcc gtaatcacac tatcttcgtg agtgaaattt cctctttcaa
    12421 ataaaagctt tgaaatttcc aaagcaaaca cagaacctac aatactagaa gcaataagca
    12481 aaatgcttaa aagcgctaat gctctttgca taaattttaa ggctaaattt tcttgatcac
    12541 tttttaaatg ttttaaaatt tttggaaaag aaacttgagt taaagcaata gcaaaaagtg
    12601 ccagggggag ttggaagaca cgatttgcat aataaagata agaaatactc ccgctcatta
    12661 aaaaactagc tatagttgta tcaagcaatg agctaaattg agtcgcagaa gaacctaaaa
    12721 ctccatgaaa aaaattgcca taaaaacctt gtaatttcgc cttggttttt ttaaatttta
    12781 tacttaaagt catagcacgt attacaggat tgttttttaa aacaagcaaa tgtaaaataa
    12841 gctgtgctac cccacttaaa accgttgcat aagaaaaata ataaagtgta ttttgcggtg
    12901 catttttatc cacaaaaaag gcagctataa caatacttaa gttaaataat gccgcagaaa
    12961 aagaggtaat gaaaaatttt tgtctataat ttaaaatagc tcctaaaaaa gtaactaaaa
    13021 aaataaaaaa caaataccaa aaattaatcg ccaccaaagg agccgctaaa gctatagtat
    13081 ctgcgttaaa cccaaaagca aaaagcttag taaaaaaaga ggaaaaaaaa cttaccaaaa
    13141 gacaaaataa aaaaactata aggctaaatt gcatcattac actaacgcaa aaagctccct
    13201 tttttttcgc ttttacaaaa ttaggcaaaa aactttgtcc aaaagcccct tctgcaaaaa
    13261 ttcttctaaa aaaagcaggc atttttaaag ccacaaaaaa aatatcacta taaagccctg
    13321 ctcctaaaaa aagcgctatt aaaacatctc tagcaagccc taaaattctt gaaaataaaa
    13381 ttcctaaagc attgataata aaatttttaa atactaaact cttcattaaa ttttttcata
    13441 aatttcaaaa tataaagaga actattttaa ctaaaattga ttaaaaattg actataatta
    13501 cattcttaat tttttacaag gggaaagttt tggctttgga tgaaaaaatt attgcctata
    13561 cagaaaatcc agctcgagag cttttaagcg tagcttcacg aacaaacctt agcttaaatg
    13621 agcttgattt tagtttattg gcattttcta cacaatatcg ttttggagat ttagaatggg
    13681 aaaaaatctc tgaaaaagaa ttaactcttt ttgataaaga tgaaattttt ttaaaaaatg
    13741 atcttcaaat taagcaagaa tacaaaatag aaattttcca cggtataaac caaagcaaag
    13801 catctcaagc agtcaaacta gttgcaaata aaaatttaac caaaatagtt gctcaaattg
    13861 attttacaaa tttagacttt catgaaaaac tagcactaga acttttgcaa aatatttata
    13921 aaaagatgtt gaaacttaaa tttttaatag gtatccgcat ttttgatttt aagaaaaaat
    13981 taatgtcttt ttgcaaccaa tataaaaaca cccctttaaa taaaactata caaatcaccg
    14041 ttgcacaagg tattgatcct atagaaagtc aagatgaatc tctgatcttg acttataaag
    14101 aaaaaaccaa aaactacact atcgatgaaa aacgctcagg tattattgtt gttgatgaaa
    14161 atgaagttgt tttaaaacac gtcaaattta aacaaggtaa agaaggaaaa gacttaaatt
    14221 tacacacctt aaaagtttta gccgcaaatg aaaataaagt taaattttct tgttcttcgg
    14281 cttttaaaca agtagagcaa gatggataca cagaatatat agccttaaaa aaaggttatg
    14341 tagtacaaga tggtgaaaaa tttgatatcg ccaatgaact agattttaat ggggtagatt
    14401 ttaaaaatat agggattata agagctggac tagacaaaaa tgtcaaaatc aatataaaat
    14461 ttctttcaga agtaaaagat gctgtaaatt ctggcgttgg gatagaatgt gaagaattaa
    14521 atgtagtcgg aagcgtagga agcaacactc aacttaatgc caccaaaatg aaaattgaag
    14581 gcactacgca ctctaaagcc aaaattcaag ccaaacaagc ctatataaaa actcatagag
    14641 gatttgcgga agccgaaatt ttaaatatag atttgctcga aggtggaaca atcaaagcca
    14701 aagaagtgag aattaaaaaa agtttaggcg gaaatataca agctgataaa atctatatag
    14761 aaaatttaga aagtaataat tcttgtgtgt tttttgaaaa caccacaata gaacgcatta
    14821 acggggataa caataaattt catgctaaaa ttaaaactct tgataaaaat tatgatgaag
    14881 aatttgcgat tttaggagag caaatttcta agttaaatca taaaataaat aaaataagac
    14941 aatacatttt atcaagcaaa aatggaattt taagcgttga aaaaaagata acagaactta
    15001 aaaatcaagg tcaaaatgtt cctgtacaat acgaaaaagc cctaaaagat ttctctttac
    15061 aaaatcttga attaaataaa ctacaaaatg aagaaaaaga acttcttgaa cgcaaaaaat
    15121 ctttacaatt agaattaatc aatttgcaaa aaatgctttt tgaagcaact tttataaata
    15181 aaagcggcaa atggactgat atgaatgaaa tcaaattttc acttctagag cctaaagaag
    15241 atattttttg ctcttcattt gttaatgaaa gtgctaaatt tataggcatt aaaaaagtca
    15301 tacaaaacaa ccaagaaagt atagaaatac ataaaaaatt agattatgaa gaaaaggata
    15361 tagcatggtt gtcggcatcg aaggaataat cacaaaaaaa gaacctactt ttatcattgt
    15421 taaatgtgct agtggtttaa gctatgggat atttatttct cttttttgtt ctgctaaaat
    15481 tcaaactcaa gaaaagcatg agttttttat cactcaaatc atcaaagaag attctaataa
    15541 attttatggc ttcttggata aagatgaaca aaaaatgttt gaaatgcttt taaaagtcaa
    15601 tggagtgggt gcaaatactg ctatggcggt atgctctagt cttgatgtaa attcttttta
    15661 caaagcgtta agtttgggcg atgaaagcgt gcttaaaaaa gtacctggca taggtccaaa
    15721 aagtgcaaaa cgcattatag tagaactttc tgacacaaaa accaaacttg aaaatgtaag
    15781 caatgataaa agcgaagcct tagccgcact tcttactcta ggctttaaac aagaaaaaat
    15841 cataagtgtt ttagtaagtg ctcaagcaac aggcacaagc gaactcatca aagaagctct
    15901 taaaaaacta ggataaagga ataaaatgaa atttgcaata ctttttggcg gaaattctta
    15961 tgaacatgag attagtatag taagtgctgt agtgcttaaa aaagttatca atcaaaattt
    16021 agaatttatt ttttgtgatg aagaaagaag attttatcat atcccaagtg aaaaaatgaa
    16081 ttctaaaact tttagcacca aagcttataa aaaagaaaaa gaactcttca tcaaacaagg
    16141 aggttttttt agcaaaggct ttttaaaaga aaataaacta gagtgcgaat gcgtgatcaa
    16201 tcttatccat ggtagagatg gagaagatgg aaaaattgcg gctttatttg agttttattc
    16261 tattaaattt ataggaccta ggcttgaagc tagtgtatta tcttttaaca aagaacttac
    16321 caaactttat gccaaaagcg ttggagtaaa aacacttgat tataccatac taagaaaaaa
    16381 tcaaaactct aaagaaaagc ttagttttcc ttgcattatc aaacctgcaa gacttggaag
    16441 tagtataggt attagtatag taaaagatga aaaagattta gaatacgcca aagatgtagg
    16501 ttttgaattt gacaatgatc ttgtagtaga agaatttaaa aacaatatca aagaatacaa
    16561 tcttgcagga tgtatgatca atgatgagtt tgttttttcc attatagaag agccaaagaa
    16621 aaaagaattt ttagactttg aacaaaaata tcttagcttt tcaggacaca atgaacttat
    16681 agaagcagat ttaagcgaag aattaaaaga aaaactcaaa gatagcttta aaaagatcta
    16741 caatcctttg tttaaaggtg ctttaatacg ctgtgatttt tttatactgg ataatgaaat
    16801 atatttaaat gaaatcaacc caaaccctgg ttctttggct aattatcttt ttaaagattt
    16861 taataccact ttaaacgctt tagctgatca aatttcactt gaaaaaatga taaaaatcaa
    16921 ttacaacttc cttcactcca ttaacggaca aaaaggaaaa ttataagctt ttaagtcaaa
    16981 atgcgctaaa ttatacataa aatttagcgt attttaggaa gaaaaatgct ctcttttaaa
    17041 caagatgaaa tttacactgc caccgaagtg gtaagaaatt ttagccccat tatggaaaaa
    17101 ctcaaaaaaa gcgaaaatgg aaaaatagtt attttaaaaa ataacaaatt tgaagctgta
    17161 atgcttagta tgaaagaatt tgaacgctta caaaatgcca tgcaactttt agaaaatatc
    17221 tacaaaaatc aaaaggctta aaatggctca aactcaactt tcttataaaa acaaaactta
    17281 tcaaatttct tatgaaattt taggtgatct ttccttaccg caaatactta tcttacacgg
    17341 ctggggagct gataaaaaac ttatgaaaca aagtttttgt ccttttttga aagatttttg
    17401 tcaaatttat atggatttag caggttttgg aaattcaagc gtggaagaaa ttttaaacac
    17461 tcaagattat gccaatatca cagaactttt tttaaaacaa aaaaaactca atgtctgttt
    17521 tttcatgggg cattcttttg gtggaaaagt aagtacccta ctcgcaaaag aaaaagacac
    17581 cctaatccta ctttcaagtg caggaatttt ggctaaaaaa tccctaaaag tgcgttttaa
    17641 aatccgtatt tttaaaattt taaaactctt tggtttggga aaattttatc gctattttgc
    17701 tagtaaagat ggagcaaatc ttagtcctat aatgtatgaa acctttaaaa aggttgttga
    17761 tgaggatttt agtgaaattt ttgccaagca aaaggctaaa agcttgattt tttggggaaa
    17821 aagcgatgaa gctacgcctt tgtattgtgg tgaaaaaatg catcaatttt taaaaaatag
    17881 tactttttat cctttagagg gggatcattt tttcttttta aaacactctg ctttcatagc
    17941 tcaaaaaatc aaggaaattt aaatgcttat caatactctt tattttatca attctttatt
    18001 ttttaatttt tgtatagctt tttatcttat gagtgcttta caatggtatt cttataaatt
    18061 taaacgcgtg ttttttcatt atcataaacc tttgtggcat ttgtattttt tatttattcc
    18121 ttatttttta ttcttagcct ttcctttata ctctttggta tattttgcat tgatccatac
    18181 tccgattttg tatttttgga ataaaggcat agataaaaag cttgttttta caagtaaggt
    18241 taaatggttt tttgtttttg tttttgttta taatactatt tttaccatcc ttgctttgcg
    18301 tttttctttt ctttttaatc tttttagtct tccttttgct ttattgagtc ttaaaattta
    18361 tgagtttttt acaaatttat attataaaaa acaagccaaa gccaaactaa gagccaatga
    18421 aaatttaaaa atcatactca ttaccgcaag ttttggaaaa acaagtatta aaaatttttt
    18481 atacgaactt ttaaaagatg actttaaaag ctacaaaaca ccacgctctg tcaatacctt
    18541 actaggtata gttgctgata tcaatgctaa tttaagtcaa gatactcaaa tttacatagc
    18601 tgaagcaggc gctagactta aaggcgatat cgatgaaatc acgcattttt tacaacctca
    18661 aatcagcata gtaggagaga taggcaatgt acatttagag tattttaaaa gtgttgaaaa
    18721 tatccgctca accaaacttg aagccttaaa ttccgaaaga ctagaaaagg cttttttaca
    18781 ctctagcacc caaaaagaag aagataaact catcagcctt tatgatgata aattaagtct
    18841 tattcattca agtcttgaag gtttagaatt taaagtcgat atagaaaata aatcctatga
    18901 ttttaaaagt caaattttag gggattttaa tgcgcaaaat ctttgtgttt gtatactttg
    18961 tgctcattat cttggcataa aactagaaaa aattcaaaag caagttttaa atataaattc
    19021 cgtagaacat cgcttgcaag tgctttcaag agagcctaaa tttatcatag atgatggttt
    19081 taatggaaat tttaaaggta tgagcacaag ctataaactt tgtaaaagct ataaaggacg
    19141 caaagtttta gtaagtcctg gtatagtaga agtaagcgaa gaagaaaata taaaacttgc
    19201 caaaatcatc aatgagtgtt ttgatcttgc tatcattagt gcacaaatca atgctgaaat
    19261 tttcaaaaaa gagttaaaaa taaaaaccat tatacttaaa gaaaagagtc aactagttca
    19321 aactctagct aaagaaacaa aacacggaga tttgatactc ttttcaaacg atgcacctag
    19381 ctttatgtga tttgcataag tatttgcaaa tgtcatcatt tttaatttga cttcgtgcaa
    19441 atacttccta aaccctagtt tgccccataa gattatttaa tctatccatt atagatccaa
    19501 cataagaatt gatactttca ctgcttgctt tccaaccatt agcttttact tgattaaatt
    19561 ctctatcaaa ccaagctcca ccataaccta tgcttgtatt ttgccaagca acccctttat
    19621 ccattgcata tatatctgca tcaagccaac cctcttgtgc atagcctttt aacaaacttg
    19681 caaaatcaac tttacctgtc ataatgtcat ctaaagaagc taaagagcca tcaaagcttt
    19741 ctttagccat agcttcagca taagacttag ctataggatt taatgttgca ctaccttctc
    19801 ttggcgatac acccgttgat tttaaaaaac tcataaacaa agcttcttta gaataacttc
    19861 catcttcatt ttgtggataa actgacatat caggattaaa agtatctatt gcagtgtctt
    19921 tatctaaatt ttgagtttgc atactttgcg gagtgaaatt taatggttgt aagcctatat
    19981 taatatgtcc aaacattcct aattgttctg cttcattata ttgctcttgt gtattataat
    20041 agtttgttat tgttagcttg tcataatttt tcggcataat acctatagtt ttatcagatg
    20101 ataattcact aattccctta ggcatagaat ttatatctgc ttcagtgaaa cttgttttat
    20161 tggtatcatt aaaagcataa ttaacaattt gattaaattg attataatat tgttttatgg
    20221 tttcagccat atctatgttt gtataatatt tatctatacc taaatatttt tttatatctg
    20281 aagtataaga gttattttca gccttcctct c
//
LOCUS       DARBBO010000021        19957 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.021, whole genome shotgun sequence.
ACCESSION   DARBBO010000021 DARBBO010000000
VERSION     DARBBO010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19957
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.021"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..1181
                     /locus_tag="SB854_000606"
     CDS             <1..1181
                     /locus_tag="SB854_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG0956640.1"
                     /translation="LSNKENMKEEKLNHNTKNQDEEKHIKASKEDENLDSGIKTHEED
                     TQDTKNDIQNNETENKPDNDIKNSTPNQEKIKDEKQEKSKENIKENPKFYETKIENKT
                     SINTNTNTSNPNTNNTQNLNNTQNIQSNNNQTMQNIFKNQEFIKQNIVKNLAFNVENL
                     DLEQVQDLSKNLNNLSRRLNESLKELEPYTQNAKLNQAELKNLEHKLNLSTKDLAQIK
                     PKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAIYNQANRLLAQIEINQLMSLANDSI
                     NTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGDLEILISLNNEKYIDINIMA
                     ENIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDTRNMKNLDLEMGMDKKV
                     "
     gene            1178..1459
                     /locus_tag="SB854_000607"
     CDS             1178..1459
                     /locus_tag="SB854_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HEG0956641.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(1456..2256)
                     /locus_tag="SB854_000608"
     CDS             complement(1456..2256)
                     /locus_tag="SB854_000608"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG0956642.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNINMSEFKA
                     PCEYESLNALFTRTLQIPRKFEEGFISPSDGKILECGSTFLANEEHFAFSIKGHAYSV
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGVLYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDTSIQTNAKISHNFTRK
                     YENLNFKKGEELGNFELGSTIVLISQKGILNFNLKAGQGIKFGEKIAD"
     gene            complement(2253..3377)
                     /locus_tag="SB854_000609"
     CDS             complement(2253..3377)
                     /locus_tag="SB854_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEG0956643.1"
                     /translation="MIFLIFSFIVLLIFGLANVYIYKRLIKKITLFKYFYKIFSFIFI
                     VLFLAQAVFLIFRRDEYLSDTWYEILAMFYAPTYCLFFMTLAWDFVKLILALMGKRDK
                     TYNLILRLIFELSLIVLSVFLIYASINNALKTPEVKSVDVEIPNLKKDLKIVMLTDIH
                     LGKNLHENFLDKLITKVNLQSPDMVVIVGDLIDTNPKDLKNYISKLNDFNSTYGTFYA
                     LGNHEYYHGINEVLDLLRKHTNMKILVNQNLDLGFINIAGLGDLAGLDRGLYAPDLAR
                     IKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIFPFMFLVKLQQGFVHG
                     LYDLGEKTKLYVSSGAGFWGPSLRVFAPSEIVILNLKGKK"
     gene            3463..4758
                     /locus_tag="SB854_000610"
     CDS             3463..4758
                     /locus_tag="SB854_000610"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEG0956644.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFSISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLVILGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAPLAKFYT
                     QEASTIKELKEKMQAIFNAKNFGEFETECKILKELLKDIELFENYEDFKNELLNKSNL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            4761..5042
                     /locus_tag="SB854_000611"
     CDS             4761..5042
                     /locus_tag="SB854_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEG0956645.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            5039..6664
                     /locus_tag="SB854_000612"
     CDS             5039..6664
                     /locus_tag="SB854_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEG0956646.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRYSMLEINPENISE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRHLLNDSIKISDIFENLIQNKANDLNKS"
     gene            complement(6561..7046)
                     /locus_tag="SB854_000613"
     CDS             complement(6561..7046)
                     /locus_tag="SB854_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0956647.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKASLPSVKEETRLVAKICLDHLPCFELNFQKYPKSLYYRSEDVDTQY
                     N"
     gene            7142..7633
                     /gene="mobB"
                     /locus_tag="SB854_000614"
     CDS             7142..7633
                     /gene="mobB"
                     /locus_tag="SB854_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HEG0956648.1"
                     /translation="MKQLIIAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLSPDFDICLVEGLKT
                     LDLPRISVFCKEIDESYFIFSNAIASYEKISHPYLTWLDLNDIQAICQYILKNAKNLQ
                     GEL"
     gene            7635..8477
                     /locus_tag="SB854_000615"
     CDS             7635..8477
                     /locus_tag="SB854_000615"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HEG0956649.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTSYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNERANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNRSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            8470..8667
                     /locus_tag="SB854_000616"
     CDS             8470..8667
                     /locus_tag="SB854_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956650.1"
                     /translation="MNEVRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            8677..10563
                     /gene="metG"
                     /locus_tag="SB854_000617"
     CDS             8677..10563
                     /gene="metG"
                     /locus_tag="SB854_000617"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEG0956651.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDEFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQNGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYVSSLDFQNKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPKFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDAYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFYNAELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALIALCANILAKT
                     SLLLSPTLPKSSQKVALALNFEISSANYTKMILDNELLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEESPKIKIDDFAKIEIKVAKVLDCQNIEGSEKLLKFQLKLDDKEIRQVL
                     SGIAKYYKASDLIGKQVCVISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            10567..11508
                     /locus_tag="SB854_000618"
     CDS             10567..11508
                     /locus_tag="SB854_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956652.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKTGFAFFNNDK
                     KEIAQAVKKGAYAIITENDITIEDKDIFYFRVENLEQALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFTDFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFKNLNLPFFYANSFAKIISFLKEKSQKIIFDFNKIDDFK
                     IYFIDDKFEITPFGSSSQAFIVSNNQNTFEFWKEKFKNIKDFKIASKNSLFCDFSYNQ
                     LSDLRKLKNFKYCLILENYDIFEQEFENKENQTPSLF"
     gene            complement(11500..11952)
                     /locus_tag="SB854_000619"
     CDS             complement(11500..11952)
                     /locus_tag="SB854_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEG0956653.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGTDFESKVYKALMEIPYGKIATYKDIAEKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIANNGIGGYNGGLEIKRFLLENEGVNLK"
     gene            12007..14553
                     /locus_tag="SB854_000620"
     CDS             12007..14553
                     /locus_tag="SB854_000620"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HEG0956654.1"
                     /translation="MSFIQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDAAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANAGWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQTGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYDGKIIKNGSAIAEFTLSPNTLLDEVRAGGRIPLI
                     IGRGLCTKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     ITLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEVGYENK
                     ATLARRAEKMREWLKNPTLLRTDKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSDEHKANIYRYLNFNEIENFKLEN"
     gene            14613..15851
                     /locus_tag="SB854_000621"
     CDS             14613..15851
                     /locus_tag="SB854_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HEG0956655.1"
                     /translation="MKLLFASFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNIA
                     SSCKESLKNQDFTKKLYAISNEIRGSNSSCNGVTYLPKLQQFDFLLLKIAIDPIAYQK
                     TLDTPENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWKEYNNAIEPLEKYFESNFNFD
                     KGSNIYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQD
                     DLTIALQAALLNQREKEILELLIRFGARIDEGYESAIFYALENYKNTNFLIQNGANVN
                     QANAFGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFIT
                     FCALEHTSKNVLMHAAAYGNVEILKLLISKGANFNTVDDLGFNALDFALAAGKKENAD
                     YLKSLGLKANENLFYGGSLE"
     gene            15848..16597
                     /locus_tag="SB854_000622"
     CDS             15848..16597
                     /locus_tag="SB854_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEG0956656.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNA
                     HKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MVDTNIKGFLYVAKAVIPTLRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSEVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            16594..18327
                     /locus_tag="SB854_000623"
     CDS             16594..18327
                     /locus_tag="SB854_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HEG0956657.1"
                     /translation="MNKFLVLLFLPLVAFANSSEAATNANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFAGVLSGTFLLSLSANIFKAQHLTFVNYYNTAVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISDISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEIRARTTGQIAP
                     LPKSGTLNTAELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASANPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGLSVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            18324..19397
                     /gene="trmA"
                     /locus_tag="SB854_000624"
     CDS             18324..19397
                     /gene="trmA"
                     /locus_tag="SB854_000624"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HEG0956658.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFASKDKHYRTR
                     AELSFYHENDTLFYAMFDPKNKKKYIIKYLDFADEKICAFMPKLLEYLRQDNKLKEKL
                     FGVEFLTTKQELSITLLYHKNIEDIKSNLENLSNILHINLIARSKGKKLIFKTENLRQ
                     TLNIQDRKIFYEFNNDCFIQPNTAINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKILATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRVE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(19384..19800)
                     /locus_tag="SB854_000625"
     CDS             complement(19384..19800)
                     /locus_tag="SB854_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002956941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopD"
                     /protein_id="HEG0956659.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLFLSGGALAGFHFKPLNLLFAVKIILAFGILSLVVFSLFCHFI
                     LKKKNPLGVFIHPFVFVLCIAIVILAKLMNYFFIPC"
BASE COUNT         7465 a         2984 c         3018 g         6490 t
ORIGIN      
        1 ttttaagtaa caaagaaaat atgaaagaag aaaaacttaa tcataataca aaaaaccaag
       61 atgaagaaaa acatataaaa gcatcaaaag aagatgaaaa tttagattct ggtataaaaa
      121 cccatgaaga agatacccaa gatacaaaaa atgatattca aaataatgaa acagaaaata
      181 agccagacaa tgatataaaa aattctactc caaaccaaga aaaaattaaa gatgaaaaac
      241 aagaaaaatc aaaagaaaat atcaaagaaa atccaaaatt ttatgaaaca aaaatagaaa
      301 acaaaacttc aatcaataca aataccaaca cttcaaatcc taacacaaac aatacgcaaa
      361 atttaaataa tactcaaaat attcaatcta acaataacca aactatgcaa aatattttta
      421 aaaatcagga atttataaaa caaaatattg taaaaaattt agcatttaat gtagaaaatt
      481 tagatctaga acaagtgcaa gatttaagta aaaatttaaa caatctttct cgtagactta
      541 atgaaagctt gaaagaactt gaaccctata ctcaaaatgc caagcttaat caagcagaac
      601 ttaaaaatct cgaacacaaa ctcaatcttt ctaccaaaga tctagcacaa attaaaccaa
      661 aaacagaaca agatatagct gaatctttac atcatgatgt aaaatcaaca cttttgcaaa
      721 tttcaaattt ggctaaaaat gaaggcaatg aagctatata taatcaagct aatcgtcttt
      781 tagcacaaat tgaaatcaat cagcttatgt ctttagctaa tgattctatc aatacttatc
      841 tgcctttttc ttgggatgat ttaaatgatt ctaaaattat gtttagacgc ggaaaaaagg
      901 ataaattttt tgctcagatt aaactcgaat ttgcaaaact tggggatttg gaaattctta
      961 tttctttaaa taatgaaaaa tatatagata ttaatattat ggcagaaaat attgaattta
     1021 gaaaaaccat ctatgaaaat gcccatgagc ttaaaagaaa tatcaataaa gcaggacttt
     1081 taagtgcaaa tttctttgta ggtgatatca taagaagtaa atttgatact agaaatatga
     1141 aaaatttaga tcttgaaatg ggtatggata aaaaagtatg agcaaaatca aaagatcgat
     1201 taaaaaagct gtagctctag gctatcaaaa agaaaaaaac tctgccccaa aagtgcttgc
     1261 aagtggcaaa ggtgaaagtg ctgctaaaat tatttcttta gccaaggaac acggagttcc
     1321 tattaaagaa gatgaagatt taatagaaat tttaagcaaa cttgacttag gcgatgaaat
     1381 tccacctaat atgtataaag ctgtagctga agtttttgcc tttatctatc aaatggcaaa
     1441 taaaactcct aaaaactaat ccgctatttt ttctccaaat ttaataccct gccctgcttt
     1501 taaattaaaa tttaaaatcc ctttttgaga gattaaaact atagtagaac ccagttcaaa
     1561 atttcctagt tcttcgcctt ttttgaaatt taaattttca tattttctag taaaattatg
     1621 agaaatttta gcattggttt gtatgcttgt atcaaaatta aaacgcattt ttcctacatt
     1681 ttgcgctcct acaaaaacaa gccaaaaaat acctttttca ttttgacatt tcaagctcac
     1741 tctttcattt tttacatata aattactaat gcgttctaaa tgtttttcat ttacgctata
     1801 aagcactcca cttgtgtaag ttgcacttaa aatttgcata tcacaagggc tgtgataacg
     1861 atgataatct tttggagaaa gataaatatt gacataatca agcccatttt taagttcatc
     1921 tttttcaaag ctatctttta aaagctcctc aacgctataa gcatgtcctt ttatagaaaa
     1981 agcaaaatgt tcttcatttg ctaaaaaagt acttccacac tctaaaattt taccatcact
     2041 tggactgata aaaccttctt caaattttct tggaatttgc aaagttcttg taaaaagagc
     2101 atttaaactc tcatattcac aaggagcttt aaattcactc atattgatat taaaatactt
     2161 aacataattt tcattaataa ctttttgtat cattttagga aatttaatcc ccgctacaaa
     2221 accaaaaagt ctcgaacttt cttttgaaaa actcattttt ttccttttaa atttaaaatc
     2281 actatttcac tcggagcaaa aactctaaga cttggccccc aaaatcctgc tccactactc
     2341 acataaagct tagttttttc tcctaaatca taaagcccat gaacaaaacc ttgctgaagt
     2401 ttaactaaaa acataaaagg gaaaatttgc cctccatgtg tatgcccact taaaacaaga
     2461 tcaaaatcac ttaaatcata aagcaaagct gttttaggtt gatgtgtgag taaaatacta
     2521 gctttacttg tatttaaatc cacttttatt cttgctaaat caggagcata taaaccccta
     2581 tcaagtccgg ctaaatctcc aagtccagca atatttataa aacccaaatc taaattttga
     2641 ttgactaaaa ttttcatatt agtatgtttt ctaagtaaat ccaaaacttc attgatacca
     2701 tgataatact catgatttcc caaagcataa aaagttccgt aagtggagtt aaaatcatta
     2761 agttttgaga tgtaattttt taaatcttta ggattagtat caatcagatc ccctactatt
     2821 acaaccatat caggactttg caaattcact ttagtgatga gcttgtctaa aaaattttca
     2881 tgcaaatttt tacccaaatg tatatcagta agcatgacaa tttttaaatc ttttttaaga
     2941 tttggtattt caacatcaac actctttact tcaggtgttt ttagagcatt atttatactt
     3001 gcataaatta aaaacacact taaaactata agagaaagtt caaaaatcaa acgcaaaata
     3061 agattatatg ttttatctct tttacccata agagctaaaa tcaatttaac aaaatcccaa
     3121 gctaaagtca taaaaaacaa acaataagtc ggcgcataaa acatggctaa aatttcatac
     3181 caagtatcac ttaaatattc atctctacga aatattaaaa acacagcttg agctaaaaaa
     3241 agcacaataa aaataaagga aaaaatttta taaaaatact taaaaagagt aattttcttg
     3301 attaatcttt tataaatata aacatttgct aagccaaaaa tcaataacac aatgaaagaa
     3361 aaaattaaaa atatcataaa agtattataa ccaagtaaaa ttaaatatcc gtataaattt
     3421 ttctgttata ataagccttt aaataatttt aaaggctata agatgtaccg ttttgcacct
     3481 tctcccacag gtgatatgca cataggaaat ttacgcgcag caatttttaa ttatatctgt
     3541 gcaagacaaa aaaatatgga ttttatctta cgtattgaag atactgataa ggctagaaat
     3601 atagcaggaa aagaagaaga aatcaaagaa attttaaatc tttttagtat ttcatggcag
     3661 cattactata tacaaagtga aaatttaaaa ttccatcgcc aaatggcttt aaaacttgta
     3721 agcgaaaaaa aagcttttgc ttgtttttgc accgaagaag aacttgaagc aaaaaaagag
     3781 ctggctaaaa aacaaggtaa agcttatcgc tacgatggca cttgtgaaaa actagccgat
     3841 attgatgttt tagaatgtga aaaacccttt gttatccgtc ttaaaaaacc tactcatact
     3901 atgaaattta ctgattttat caaaggcgag cttagttttg agcctgaaaa catagactct
     3961 tttgtgatta tgagaacgga taaaactcca acttataatt ttgcttgtgc ggttgatgat
     4021 atgcttgaaa atgtcacttg tattatacgc ggagaagatc atgtttcaaa cactccaaaa
     4081 caagaacata tccgcgcaag cttaggttat aataaagcca tgacttatgc acacttgcct
     4141 atcattttaa acgaagaagg tgttaaaatg agtaaaagag aagcacattc ttctgtaaaa
     4201 tggctacttg aaagtggaat tttacctagc gcaatcgcga attatcttgt catactaggc
     4261 aataaaactc cttgtgaaat ttttacctta gaagaagcta taaaatggtt tgatatttct
     4321 aaagtttcaa aagctccagc aagatttgat cttaaaaaac tcttacaaat taatcgcgaa
     4381 catatcaaaa tgataaaaga tgatgagctt aataaaattt tagatttaaa caaagatctt
     4441 gcaccgcttg ctaaatttta cactcaagaa gcaagtacta taaaagaact taaagaaaaa
     4501 atgcaagcta tttttaacgc aaaaaatttt ggcgagtttg aaacagaatg taaaatttta
     4561 aaagaactct taaaagatat tgaacttttt gaaaattatg aagattttaa aaatgaactt
     4621 ttaaacaaaa gcaacttaaa aggtaaaaaa tttttcatgc ctttaaggat aattttaaca
     4681 ggaaatatcc acggacctga gcttagcgat ctttatcctt atattaaaaa ttttattcac
     4741 gaattagcaa ggatttaact atggttatag actcttttat tatttctatt tttcaagtac
     4801 tacaaattgt cattaacatt tatacttgga ttattatcat cacagcactt ctaagctggg
     4861 taaaccctga tccttataat cctatagtgc aaattttata taaactaagc taccctgctt
     4921 acgccttagt tagaaaaatt ccaacacgca ttggtaatat tgatcttgcg cctttgatta
     4981 tagtcttagc attgcagttt cttggcattt ttcttgggaa tatcttaagg agtatattgt
     5041 gataaaaaaa atactcgttt ttttatttat tttttcaagt ttaaatgcta cacaatatag
     5101 tatagaaaaa ctcaaaaagg aagaaaattc acttgctaag gattattata tttataggct
     5161 tttagaaaaa aataaaatca gtaaaaaaga tgcacaggat ttaaattctc atatttttcg
     5221 ctatatagga aaaattaaat ctgaacttga aaaaatcatc cctttaaagc cttatatcaa
     5281 cccaaaatat gctaaatgct atacctatac agcaaatact atcttagatg caaatttaac
     5341 ttgtcaaagt gtgcgcttaa attcattagt ttttatagcg agtctaaatt ccaaagaccg
     5401 aactacttta gctcaaacct ttaaaaatca aagacctgat ttgacaaatt tattgctagc
     5461 ttttaatact tctgatccta tgagctatat agtacaaaaa gaagatatta atggtttttt
     5521 taaactttat aattattcta aaaaatacga cttagattta aatacaagtt tagtcaataa
     5581 actaccaaac cacattggtt ttaaagattt tgcacaaaat attattatta aaaaagaaaa
     5641 tccaaaattt agatattcta tgctagaaat aaatcctgaa aatataagtg aagattctgc
     5701 tttctattta ggagtcaatg ccttaactta tgataaaaca gagcttgctt atgacttttt
     5761 taaaaaggcg gcacaaagtt ttaaatcgca aagtaataaa gacaatgcta tattttggat
     5821 gtggttgatt aaaaacaatg aagaagattt aaaaacttta tcgcaaagtt cttctttaaa
     5881 tatttatagt ctttacgcaa aagaacttac taacacacct tttccaaaga tagaaagcct
     5941 taatccaagc aagaaaaaaa ataattttaa tatgcaagat ccttttgctt ggcaaaaaat
     6001 aaacaaacaa attcgcgatg ctaacgcaag tcaactagat gtcttggcaa aagaatttga
     6061 cacacaagaa accttgccta tttatgctta catattagaa cgcaaaaata attttaaaaa
     6121 acattatttt ataatgcctt attatgacaa tataaaagac tataacaaaa caagacaagc
     6181 tttaattttg gctattgcca gacaagaaag tcgttttatt ccaactgcta tttcagtttc
     6241 ttatgcttta ggcatgatgc aatttatgcc atttttggcc aatcacatag gggaaaaaga
     6301 attaaaaatt ccaaatttcg atcaagattt tatgtttaaa cctgaaatag catattactt
     6361 tggaaactat catctaaatt accttgaatc acgtttaaaa tctccacttt ttgtcgctta
     6421 tgcttataat ggcggtatag gatttactaa ccgtatgctt gcaagaaatg atatgtttaa
     6481 gacaggcaaa tttgaacctt tcttgtctat ggagctagtt ccttatcaag aaagccgaat
     6541 ttacggaaaa aaagttctag ctaattatat tgtgtatcga catcttctga acgatagtat
     6601 aaagatttcg gatatttttg aaaatttaat tcaaaacaag gcaaatgatc taaacaaatc
     6661 ttagctacaa gcctagtctc ttccttgaca ctaggaagag atgctttaaa ataatcagta
     6721 tagttgtttt gtattatata ttttaaatac tcatcatcca atttttcaat attggctttt
     6781 ttattattga taaaaacttc taaattttga atttttaatg tatttggagt aaaagacaag
     6841 gccaatacat catctttact tgtcttgtct agaattgggt ttaaataaga catagttata
     6901 atggcattaa tcttatcttg tgtgattttg tatttttgag taaacattaa agtttgagat
     6961 tttaaatttg tatccacaat cgcctgatct tttaaagaac aagctccaag caaaaaagca
     7021 cctaaaatta cactataaat tttcattctt tttccatatt ttttagtatt attgtagcct
     7081 tttaacccta ttttttggtt taaaaagata taattttgca aaaaaattaa gagtatattt
     7141 tatgaaacaa cttattatag cttttagcgg gccttcaaat tcaggaaaaa ctacactcat
     7201 aaccaaaata gctgataatt ttttgcaaca aaatttaaaa gttttaatca ttaaacatga
     7261 tcctgccgat aaagctcaat ttgattttaa cggtaaagat agttttaaat tttttcaaag
     7321 tggagctgaa gtcatggttt taagccctac aagaacaact tttttttctc atgaaaatag
     7381 agatatttta aaagctttaa aattaagccc tgattttgac atttgtttgg ttgaaggatt
     7441 aaaaactctt gatttaccac gcattagcgt attttgcaaa gaaattgatg aaagttattt
     7501 tattttttca aacgccattg caagctatga aaaaatttct cacccttatc ttacttggct
     7561 tgatttaaac gatatacaag ctatttgcca atacatactt aaaaatgcta aaaatttaca
     7621 aggagaatta taaaatgcaa gaagtgattt cttatataca aaaagcggtt ttagaaattt
     7681 ctaacgcttt aaaatttccc gatacaagct acagtcaaaa tcaaaatttt acaggcgata
     7741 cccaactcaa gtttgatgtt ttaagtgatg aaatcatcac aaaaacccta agtcaatgtt
     7801 caagtattaa agccatcatc agtgaagaaa aagatgaaat tttaacgctt aacgagaggg
     7861 caaattttat cgtagcttat gatcctttag acggttctag cttaatggat gttaattttg
     7921 ccataggttc tatttttgct atctatgaag aaaaagcaag tgctaaaaat ttaagagctg
     7981 cgctttatag tatgtatgga gcgcgattag aacttgtgat ttgcaaagat cagccaaaac
     8041 tttatcgctt aaatgcaaat aatgaattta tttttataaa agatcttaaa atgaatgaaa
     8101 aaggcaagat taatgctaca ggcggaacgc aaaaattttg ggaagaaaaa cacgctaaat
     8161 ttatcaaaag tctttttgat gaaggctatc gcttaagata ttctggagcc atggtaagcg
     8221 atatcaatca aattttatta aaagggggtg gcatttttag ctatcctgca acacaagatg
     8281 cgcctaatgg caaacttcgt gccttttttg aagtctttcc tctagccttt atcatagaaa
     8341 aagcaggcgg aaaaactaca aatggaaaaa accgctcttt acttgaactt gaatttgata
     8401 aaatccatgc gacaactcct tgtttttttg gctcagaata tgaaatttca aaacttttaa
     8461 aggcttacaa tgaatgaagt tagagatgaa tttgagcaag atatggataa aaaaaaagaa
     8521 attttacttt catgtcaaaa ctcaaaaaac ctaaactctt gttataattg cgatgaaatt
     8581 tttaactgcc aaactagaaa aaattatgtt gatgcagtct ataacagtat gtctaagggt
     8641 aaaaccgaag gcggatttga cttttaaagg aaaaaaatgc gttatattac aacaccaatt
     8701 tattatgtaa atgatgtacc tcatttaggt catgcttata ctaccatcat agccgatact
     8761 ttagcaagat tttatcgttt gcaaggacat gaaacaagat ttctaacagg aacagatgag
     8821 catggacaaa aaatcgaaga agctgccaaa ctaagaaatt ccactcctca agaatacgct
     8881 gataaaatca gttttgaatt taaaaaatta tgggatgaat ttgaaatcac ctatgatatt
     8941 tacgcaagaa caactgatac aaggcatatt gaatttgtta aagctatgtt tttaaaaatg
     9001 tggcaaaaag gtgatattta taaagatgaa tacgaaggac actattgtat ttcttgtgaa
     9061 agctttttta ctcaaagtca gcttattaac gattgttctt gcccagattg tggcaaacaa
     9121 actagaattt taaaagaaga aagctatttt ttcaaacttt caaaatatca agataaaatt
     9181 ttacaatggt atgaagaaaa agatcccatc ttgccaaaaa acaaaaaaaa cgaacttata
     9241 aattttgtcc aaaacggcct taaagatctt tccattacaa gaacaagttt tgattggggg
     9301 attaaactgc ctcaagaaat taatgatgat aaacatatta tttatgtatg gcttgatgca
     9361 ctttttatct atgtaagctc acttgacttt caaaacaagg gagaaaatgc taaattttgg
     9421 cctgcgcatg tgcatttagt aggaaaagat atcttgcgtt ttcatgccat ttattggcca
     9481 gcttttttaa tgagcgtgga tttgcctttg ccaaaattta taggtgcaca tggctggtgg
     9541 actaaagaag gtgaaaaaat gagcaaatct aaaggcaatg ttgtaaaacc taaagaagta
     9601 gttgatgcct atggaagtga agcttttaga tatttcttgc ttagagaagt gccttttggt
     9661 aacgatgggg attttagcga aaatatgctg ataaatcgta tcaatgcaga gcttagcaat
     9721 gaatttggaa atttacttaa tcgcattata ggtatgagta caaaatattc tcaaggaaat
     9781 atttcaaaag aaggtgtttt aaaattttac aatgccgaac taaatcaagc aaaagaacac
     9841 ttaaatttag cggtagaatt tttagaaaac ttacagtgta atcgttattt agaagaactt
     9901 tttaaagcct taagtgtggc aaatttagcc attagtaaat acgaaccttg gaatttaatc
     9961 aaagaaaaca aacacgaaca agctaatgct ttaattgcac tttgtgcaaa tattttagcc
    10021 aaaacaagcc ttttattaag ccctactcta ccaaagtcct ctcaaaaggt ggccttagct
    10081 ttaaattttg aaatttcgtc tgcaaattac acaaaaatga tacttgataa tgaactttta
    10141 gattttaaag caaatccttg cgaagcttta tttccaaaag tagaaaaagc tcttttaaaa
    10201 caagaaatta aagaagaacc taaaaaagaa gaaagtccta aaataaaaat cgatgatttt
    10261 gcaaaaattg aaatcaaagt tgctaaggta cttgattgtc aaaatataga agggagtgaa
    10321 aaacttttaa aatttcaact caaacttgac gataaagaaa tccgtcaagt actctcaggc
    10381 atagcaaaat actataaggc cagtgattta atcggtaaac aagtttgcgt tataagcaat
    10441 cttaaaaaag ctaaaatttt tggacatgaa agcgatggta tgatactttc tgcaaaaagc
    10501 ggagataaac ttgttttaat cacccctgaa caacttgtgc aaaacggctc tttagtgggt
    10561 taaaatatgc aaattagcaa tttaggcgaa ctgttaaacg caacactaat tcatgaaggt
    10621 agtgttttaa gcgtggaagg ttttgccata aatttaaacg aacttaaaac aggctttgcc
    10681 ttctttaata acgataaaaa agaaattgcc caagctgtaa aaaaaggcgc ttatgctata
    10741 attacagaaa atgacattac tattgaagat aaagacattt tttactttag agtagaaaat
    10801 ctagaacaag ctcttgtaag atttttacgc tttttttgcg aagataaaga atgtgaattt
    10861 ttacttttta aatcttacga actaagtctt tgcaaggctt tttattttaa cattttaaaa
    10921 ggaaatattt ttactgattt tgaaaaacta atcaaagcaa aaaagggtga aattttttgc
    10981 tactgtgaag aaaattactt aaataaactt tgcgcctatt ctcatagtct aaaagatgct
    11041 aattttacct tattatcgcg atctagcttc ttttttacaa ctttgatttg tgaaaattta
    11101 tattttaaaa atcttaattt gccttttttt tacgcaaata gttttgcaaa aattatttct
    11161 tttttaaaag aaaaaagtca aaaaataata tttgatttta ataagattga tgattttaaa
    11221 atttatttta ttgatgataa atttgaaatc actccttttg gttcaagctc tcaagcgttt
    11281 attgtaagca acaaccaaaa tacctttgaa ttctggaaag aaaaatttaa aaacataaaa
    11341 gactttaaaa ttgcttctaa aaattcttta ttttgcgatt tttcctataa tcagctttca
    11401 gatttaagaa aattaaaaaa ttttaaatat tgtttaattc ttgaaaatta tgatattttt
    11461 gaacaagaat ttgaaaacaa agaaaatcaa accccaagct tattttaaat tcactccttc
    11521 attttcaagc aaaaatcttt ttatttcaag ccctccatta tatcctccta tgccattgtt
    11581 tgcaataact ctatgacaag gtataaaaat aggaatttga tttttagaat ttgcatttcc
    11641 aacggctcta aaagcttttg gatgattaat tttttctgct atatctttat aagtagctat
    11701 tttgccataa ggaatttcca ttaaagcctt ataaaccttt gattcaaaat ccgtaccttg
    11761 tatcaaaaca ggaatgctaa attttctaag cttatgagta aaatataaat caagttcata
    11821 ttttgctaag tcaagcaaac tacaattttt ttctgatctt ttattatcac aaaaatcgac
    11881 tctagttaaa aattttccat cactatgtaa agataggtaa cataaaggca ttttataata
    11941 aactttaaac attttttatc cttcaaagag ctacaattat aataaaaaat atttaaggag
    12001 tagaaaatgt cttttataca agaatacaat aaacttgttg aagaaagagc cgctttgggt
    12061 ataccacccc ttcctttaaa tgcaaatcaa actagagaac tttgtaaatt acttgaaaat
    12121 gaaaataatg aagagcttgc aaatctttta gaaaatagag taaatcctgg tgttgatgat
    12181 gcagctttag taaaatgtga atttttagat tccatactta aaggcaaaat cagtgctcca
    12241 aatatagaca aaaaaagagc cttaagaatg cttggaacta tgctaggcgg atataatgtt
    12301 aaagttttaa tcgatgcctt aaaagatgaa aacatagcca aagatgctgc agaagtgttg
    12361 aaaaatatta tttttgtaca tgataatttc cataccatag ctgaacttag caaaaacaat
    12421 ccacacgcta aggaagtttt acaaagctgg gcaaatgcgg gctggtttaa taaaaaagaa
    12481 aaactaccac aagtgattaa atgtatagtt tttaaagtag caggggaaac aaataccgat
    12541 gatctaagcc ctgcaggaga tgcttttaca agaagcgata ttcctttaca tgcaaatgcc
    12601 atgctaaagg taagacaaac aggatcctta gaaaaaatca aagagcttaa aaaaagcggt
    12661 cgcgaagtgg tttatgtagg tgatgttgta ggaacaggtt caagtagaaa atcggcaata
    12721 aattccatac aatggcactt aggaaaagaa atagaaggtg tgccaaacaa gcacagcggt
    12781 ggtatagtaa tgggttcaac catagcaccg attttcttta acactgctca agatagcggg
    12841 gctttaccta tcatctgtga tgtaacaaac ttagaaatgg gcgatgagtt tgaaattcat
    12901 ccttatgatg gaaaaatcat aaaaaatggc tctgcaatcg cagaatttac actcagtcca
    12961 aacactctct tagatgaagt tagagcagga ggaagaatcc cacttatcat aggtcgtggg
    13021 ctttgtacta aggctagaga atttttagga atggaaagcg aaaatatctt taccaaacct
    13081 gaacaaccta aatcttcaag cggtggttat accttggctc aaaaaatgct aggtcgtgcc
    13141 tgtggagttg aaggtgtgcg tccaggtatg tatatagaac ctataacttt aaccgtaggc
    13201 tctcaagata ccacaggtcc tatgactaga gatgaaatta aagaacttgc aagcctaggt
    13261 tttaatgcag actttgttat gcaaagcttt tgccatacag ctgcgtatcc aaaagtaagc
    13321 gattcaaatt tacataaaac cttgcccaat ttcatgacaa gtcgtggtgg ggtaagttta
    13381 aaaccaggtg atggagttat ccactcttgg cttaatcgtt ttgtattgcc agataccgta
    13441 ggaacgggtg gggattctca cacacgcttt cctataggaa tttctttccc tgcaggaagc
    13501 ggacttgtag cttttgctgc agttactggt tctatgcctt taaatgtccc tgaaagtgtt
    13561 ttagtacgtt ttagtggaga attgcaagcc ggagttacct taagagattt ggttaatgct
    13621 ataccttatt atgcaatcaa acaaggacaa cttaccgttg aaaagaaaaa taagaaaaat
    13681 atttttgcag gaaaaatttt agaaatagaa ggcttgccaa acttaaaagt cgaacaagct
    13741 tttgaactta gtgatgcaag cgctgaaaga tctgcagctg cttgcagtgt ggatttaagc
    13801 atagaaagtg taagcgaata tatcaaatcc aatatctctt taattgaagc tatgatagaa
    13861 gtaggatatg agaataaagc tacccttgcc agaagggctg aaaaaatgag agaatggctt
    13921 aaaaacccta ctcttttaag aacagataaa gatgcaaaat acgcttatat tatagatatt
    13981 aatcttaatg acattaaaga gccaatccta gcttgtccaa atgaccctga tgatgtggcg
    14041 actttgagtg aaattttagc cgatgataag cgtccaaaaa atatagatga agtttttgta
    14101 ggctcttgta tgacaaatat aggacattat agagctttag gagaaatttt aaaagataaa
    14161 ggcatactta aaaccagact ttgggtagtg cctccaacaa aaatggataa agcacaactt
    14221 actaacgaag gttattacag catctttggc gcagcaggtg ctagaataga agttcctggt
    14281 tgttctttgt gtatgggtaa tcaagctaga gtaaatgatg gagctgtagt tttctcaact
    14341 tctacaagaa attttgacaa ccgtatggga atgggtgcta aagtatattt aggcagtgca
    14401 gaacttgcgg cagtttgtgc gattttgggt aaaattccaa gcaaggaaga atacttacaa
    14461 attgttagcg aaaaactaag tgatgagcat aaggcaaata tctatagata tttaaatttt
    14521 aatgagattg aaaatttcaa acttgaaaat taattcaaat ttaatactta tttggattaa
    14581 ataacaaaat taaaattttc aaaggaaaaa tattgaagtt attattcgct tccttttgtt
    14641 gttttgcaag tttaatggct agtgatgcca ttaactgcga caacattaaa aataataaaa
    14701 cattgctaaa tgaaagttca aatttagatt atttaaatat agcttcaagc tgtaaagaat
    14761 ctttaaaaaa tcaagatttt acaaaaaaac tctatgcaat ttccaatgaa attcgcggaa
    14821 gcaatagctc ttgtaatggt gtgacttatt tgccaaaatt acaacaattt gattttttat
    14881 tattaaaaat agctatcgat cccatcgctt atcaaaaaac tttagataca cccgaaaatt
    14941 tagaaaaaaa atatgatatt ttaaaatctt attttagata ttgggcatat caaagtatag
    15001 gaaattttag actttacaaa gctttttgga aagaatacaa taacgctata gaacctttag
    15061 aaaagtattt tgaaagtaat tttaattttg ataaaggtag taatatttac tatactagca
    15121 atgccttaaa cgaattttta aattgggctg ttggtgaaac aaaaatttac aaagacatta
    15181 gtcctttagc aaaaatcatg tcaaataaaa attattcagt atcttatata caagatttta
    15241 ttttttcaaa taatccaagc caagatgatc ttactatagc cttgcaagca gcgcttctaa
    15301 atcaaagaga aaaagaaatt ttagaacttt tgattcgttt tggtgctagg attgacgaag
    15361 gttatgaaag tgctattttt tacgcattgg aaaattataa aaatacaaac tttttaatcc
    15421 aaaatggagc aaatgttaat caagccaatg cctttggtaa aaccccgctt ttttatgcca
    15481 tagagtttaa tcgtcttgat atcataaaac tacttcttga taatggagca aatgttaatc
    15541 aaaaatatat taataacaat gaaaaattag cattaagtgc aaacataggt tcaaatacgc
    15601 cttattttat tacattttgt gctctagagc acacttcaaa aaatgtttta atgcatgctg
    15661 cagcctatgg aaatgttgaa attttaaaac ttcttatttc aaaaggagca aattttaata
    15721 ctgttgatga tcttggtttt aatgcacttg actttgcgct agcagcaggt aaaaaagaaa
    15781 atgctgatta tctaaaaagc ttaggtttaa aagcaaacga aaatctattt tacggaggta
    15841 gtttagaatg aaaaccgcat ttattacagg agctagttca ggttttggta gagcttgcgt
    15901 tgaagctttt atacaagaag gctacaaagt aatcgccctt gctagacgca aagagcgtct
    15961 agaagagtta aaaaatgctc acaaagataa gatttacacg ctttgcatag atgtaagaaa
    16021 tcaaaaagaa atctttgagg ctattgaaaa tttacccaaa gagtttcaag aaattgatgt
    16081 gctttttaat aatgcaggtt tagctttagg ggtagatgaa tttgataaat taaaccttga
    16141 agatatcaac actatggtag atacaaacat caaaggattt ttatatgttg caaaagctgt
    16201 tattcctaca cttcgcaaac aaaaaaatgc ttatattttt aacttaggtt cggttgcggg
    16261 acgcaatcct tattttggag gcaatgtata ttgtggaacc aaagcctttg taggacaatt
    16321 ttcattggcc ttaagaaatg atcttagagg aagcaatatc aaagtaacaa acattgctcc
    16381 aggactttgc aaaactgaat ttagtgaagt gcgttttaaa ggagatatcc aaaaagctga
    16441 tgcagtgtat gaaaatacgc aatttatcag tgctaatgat attgccaaag tggtaatgtc
    16501 tatcattaac ctaccaagtc atattaatgt taatgaaatc gagcttatgc ctgtcacaca
    16561 aacttggaat ggattttata tagaaagaga tgaatgaata aatttttagt tttattgttt
    16621 ttacctttag ttgcatttgc aaactcctca gaagcagcta caaatgctaa tttatttgga
    16681 gcttttacac ttataccgcc tttagttgct attgctttag cctttatcac aaaagatgtt
    16741 attttgtcac tctttgctgg agttttaagt ggaacttttc tgctcagtct ttctgcaaat
    16801 atttttaaag cacaacattt aacttttgta aattattaca atactgcggt agaatctttt
    16861 tcaaagatta tttcttatat cttaggttca acttcagatc cagtaaatgc aggaatcatt
    16921 ttacaaattc tttgtatagg tggtcttgtg gcacttatca caaaaatggg aggtgcaaaa
    16981 gctgtagcat taaaatttgc caaaagagcc aaatcagctg tatcagctca agttaacact
    17041 tggtttttag ggcttttaat attttttgat gattatgcta atttactaat cgtaggtcca
    17101 attatgcgtc ctttggcaga taaatttaaa atttctcgtg aaaaatttgc ctttattatc
    17161 gactctaccg cagctcctgt ggcaggaata gctgtaattt ctacttggat aggtttagaa
    17221 gtttctttaa ttaaaaccgc ttatgaacat ataggcatta gcgatattag tgcttttgga
    17281 atttttgtcg aaaccatacc ttatcgtttt tataatatct tcatgctttt ttttgtagtc
    17341 atgactgcaa tcatggggcg tgagtttggt tctatgtata aagctgaaat acgtgcaaga
    17401 accacaggac aaattgcacc tctgcctaaa tcaggcacac taaatactgc tgaattagaa
    17461 gatcagtttt tagcaccaaa agaaggtatt aaaattcgtg cttttgatgc tattgttcct
    17521 atttttactt taatcatttt agctatatta ggattttatt ttaatggact tagcacttta
    17581 gaaggcgaag aacttgcaaa agcaagtgcc aatcctttgt cttttgaaac ttttagagct
    17641 gcttttggaa atgctgattc ttctgtggtg ttattccaag ctgctttgtt tgctgctatt
    17701 gtagcgattt ttatcggggt gcgtcgtaaa attttcaatc ttaaagaagc ggtagaaact
    17761 tggatatatg gctggaaaac catgattttt accatagtat tgcttttatt tgcttggtcg
    17821 ctttcaagta tagtaaaaga tctaggaact tctttattta tcactagttt gcttgcagat
    17881 aaattgcctg agtttatttt gcctgctact atttttgctt ttgcttcagc catttctttt
    17941 gccataggaa caagctatgg aactatgggg attttaatgc ctttggctgt gcctttagct
    18001 catgaaatcg ccaaaatcaa tggtatggat gcaaatgcta tgcatcatta tatggttatt
    18061 aatataagct gcgttttaac aggtgcgatt tttggaaacc attgctcacc aatttcagat
    18121 aatgtaatcc tttcatctat gagtgcaaaa tgcgatcata tggagcatgt aagaacacaa
    18181 attccttatg ctttatttat ctgtggtatt tctttaatcg ctggatatat tcctgtatct
    18241 ttaggactta gcgtttggtt tgtcttgcct ttaaatttca tacttattgc acttttacta
    18301 agactcatcg gaaagaaagt tccatgagtc ttgaaaattt tggaaatttt ctcactttag
    18361 atgaaaaaca ttctttcata aaaaaatatt ttaaagaatt ttatacaaag gattttaaac
    18421 tttttgcttc aaaagataag cattatcgta caagagctga actttcattt tatcatgaaa
    18481 acgatacgct tttttatgcg atgtttgatc caaaaaacaa aaaaaagtac attataaaat
    18541 atttagattt tgctgatgaa aaaatttgtg cttttatgcc aaaacttcta gaatacttgc
    18601 gtcaagataa taaattaaaa gaaaaacttt ttggtgtaga atttttaacc acaaagcaag
    18661 aacttagcat aaccttactc tatcataaaa atatagaaga tataaagtca aatttagaaa
    18721 atttaagcaa tattcttcat atcaacctca tagcaagaag taaaggcaaa aaacttattt
    18781 ttaaaacaga aaatctaaga caaactttaa atattcaaga tagaaaaata ttttatgaat
    18841 ttaacaacga ttgttttatt cagcctaata ctgctataaa tgaaaaaatg attacttggg
    18901 tgtgtgaaat tttaaacact caaaaaagaa tggatttgct tgagctttac tgtggatatg
    18961 gaaattttac tttagcttta gcgccattct tttttaaaat tttagccact gaaatttcaa
    19021 aaagcaatat taattttgct ttaaaaaatt gcgagcttaa caatacaaca aatatccact
    19081 ttgcaagact ttcaagcgaa gaattaagtc ttgctatcaa aaaagaaaga gaattttttc
    19141 gtttaaaaga tattcgatta gatgatttta atttctctca tgttttagtt gatccacccc
    19201 gtgcaggact tgataaaagc gtaattgact taataaaaaa atatgaaaat attatttata
    19261 tttcttgcaa tcctatcact ttaaaagaaa atttaaaaga attaagccta acacatagag
    19321 tggaagagtt tgctctgttt gatcaatttg tcaatactcc acatcttgaa tgtggagtat
    19381 ttcttagcaa ggtataaaaa aataattcat taatttagcc agtattacta tcgcgataca
    19441 aagcacaaat acaaaagggt ggataaaaac accgagtgga tttttcttct ttaatataaa
    19501 atgacaaaat aaagaaaaaa caactaaaga taaaattcca aaagccaaaa taatttttac
    19561 agcaaaaagt aaatttaaag gtttaaaatg aaaacctgcc aaagcacctc cacttaaaaa
    19621 aagcaaaaga acaacaaaag gcattatttt aactccagta gcactaaaaa gacttttgtc
    19681 aaaattagga tttttctttt taactacacc caaaacaaat acatcaacaa acaaataacc
    19741 tataaacaaa atagcacaaa gaagatggat tgttaaagta tatggataaa attcttccat
    19801 ttttccctcc ttattaaact tcggaatttg ctatattata acactttttt cattttttga
    19861 attcacttta gttaattttt taatcattta agataaaata ccaaaacaaa ggttaacaat
    19921 gaacgaaaaa gaaactatct cttatattat aaataca
//
LOCUS       DARBBO010000022        18936 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.022, whole genome shotgun sequence.
ACCESSION   DARBBO010000022 DARBBO010000000
VERSION     DARBBO010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18936
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.022"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..497)
                     /locus_tag="SB854_000626"
     CDS             complement(<1..497)
                     /locus_tag="SB854_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956660.1"
                     /translation="MENICQFIIENIDKNSLNTKKIKLVFNMQEQEITTISKIFKVSS
                     EHIIAFYDTSTSFNYFSKTTGICFTGKEVIFKRKEDEVLMKINYEDFKEANKSLPEKT
                     TTLQDIKFPISFHNLGTSYLSFDDFKKKNYIEENDELIINFLHILTSKNNIESFKNES
                     MFPQA"
     gene            complement(516..1243)
                     /locus_tag="SB854_000627"
                     /pseudo
     CDS             complement(516..1243)
                     /locus_tag="SB854_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000323697.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3944 domain-containing protein"
     gene            complement(1322..1528)
                     /locus_tag="SB854_000628"
     CDS             complement(1322..1528)
                     /locus_tag="SB854_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956661.1"
                     /translation="MGIMLGILSLIAGFVAIVLMCSLYFIAFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
     gene            complement(1519..2121)
                     /locus_tag="SB854_000629"
     CDS             complement(1519..2121)
                     /locus_tag="SB854_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956662.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGSIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDVINTEEYKLKRELEIEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKTEFLLSSYKDQMIKVIDYAKKFKCLSAFLETQSEKNDLAVVKM
                     ISESMERKTQRFYLQTKFQTFPQYIFPSVWSSPMWNKQWE"
     gene            complement(2184..3560)
                     /locus_tag="SB854_000630"
     CDS             complement(2184..3560)
                     /locus_tag="SB854_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEG0956663.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELREKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDMVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKVLRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            3714..4643
                     /locus_tag="SB854_000631"
     CDS             3714..4643
                     /locus_tag="SB854_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HEG0956664.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSHNADNSDSSFIPFIGAELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYAIGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEFELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIVLTGIGYKF"
     gene            complement(4691..6018)
                     /locus_tag="SB854_000632"
                     /pseudo
     CDS             complement(4691..6018)
                     /locus_tag="SB854_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
     gene            complement(6199..7134)
                     /locus_tag="SB854_000633"
     CDS             complement(6199..7134)
                     /locus_tag="SB854_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HEG0956665.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            7205..8437
                     /locus_tag="SB854_000634"
     CDS             7205..8437
                     /locus_tag="SB854_000634"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEG0956666.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLSIQ
                     KMSIPLGLICVIYEARPSLSAEIIALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQDKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLEVFKANENTFDTEWLDFALSVKLVKDCNEAIEHINKHSSLHS
                     ETIISNNASNIAKFQRLINSSCIYGNASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIISGEGQIRE"
     gene            8434..9519
                     /locus_tag="SB854_000635"
     CDS             8434..9519
                     /locus_tag="SB854_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEG0956667.1"
                     /translation="MNKIEMLKQHFKEIAKLNSSEQVWQMPFFAALGVGIVLGLSVFF
                     GKLNYGLIAMIGALSFLYVPNTPLYHRMAVVMCCSFGIVSSFFLGILTHFLPAIFAFI
                     PIGIMAMGSSILIRYYNIGAPGYFFFVFSCVLGAYSPFEAKDFIFLVGLVFLGAMVAN
                     LMALLYSIVVIYGFKNALPSEIPPREYIGFDAVFVDSLIMGSFVAFSIFIGTFLELER
                     SYWIAISCTAIMQGVTLNSIWIKQIQRIIGTALGVCFAWWLLSKQFHNIELVLLMMSL
                     FFIGQFLVNRNYALAMIFFTPYATYLSEAANFMSENADTLILARLIDVVIGSILGLLG
                     GFVIYKPYLRVHFERIAKYIFRIKQKA"
     gene            complement(9516..10313)
                     /locus_tag="SB854_000636"
     CDS             complement(9516..10313)
                     /locus_tag="SB854_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG0956668.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GVLVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFPLSNFV
                     FGSDWPHTNFESNVNFSSALVAFNEVVVSKKEQEQILGDNACALFDF"
     gene            complement(10324..11616)
                     /locus_tag="SB854_000637"
     CDS             complement(10324..11616)
                     /locus_tag="SB854_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HEG0956669.1"
                     /translation="MIMVFLIISSIIVAIILGYITRHNVGIFAMIFAYIIGAFFMDLA
                     PKKIIAFWPISIFFVIFAVSLFYNFATVNGTLEKLAGHLMYRFANHPYLLPFVIFVVS
                     AIIAALGAGFYTVLAFMAPLTFLLCDKIGLSKIAGAMAINYGALGGANFMTSQSGIIF
                     RGLMENSGIEANEAFVNSSIIFAFTIILPIVVLSFFVFNAFKNNIKISVILKPDSFDY
                     KQKTTLILMFMMIVVVLIFPVLNIIFPHNETISYFNKKIDIAMIAMIFVAIALFLKLA
                     DEKQVVALIPWGTLITICGVGMLISIAVEAGAIKLFSDLVENEINVIFIPLIMCAIAA
                     FMSLFSSTLGVVTPALFPIVPSIAASSGLSEALLFSCIVVGAQASAISPFSSGGSLIL
                     GSCPDKYKEKLFKDLLIKAVPIGFIAAILATIIMSFIL"
     gene            complement(11735..12739)
                     /locus_tag="SB854_000638"
     CDS             complement(11735..12739)
                     /locus_tag="SB854_000638"
                     /inference="COORDINATES: protein motif:HMM:NF022646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HEG0956670.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLAMDVDIL
                     "
     gene            complement(12749..13702)
                     /locus_tag="SB854_000639"
     CDS             complement(12749..13702)
                     /locus_tag="SB854_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HEG0956671.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVVCFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(13689..14381)
                     /locus_tag="SB854_000640"
     CDS             complement(13689..14381)
                     /locus_tag="SB854_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HEG0956672.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(14541..15110)
                     /gene="efp"
                     /locus_tag="SB854_000641"
     CDS             complement(14541..15110)
                     /gene="efp"
                     /locus_tag="SB854_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEG0956673.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            15224..15544
                     /gene="rnpB"
                     /locus_tag="SB854_000642"
     ncRNA           15224..15544
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="SB854_000642"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(15542..15817)
                     /locus_tag="SB854_000643"
     CDS             complement(15542..15817)
                     /locus_tag="SB854_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956674.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLAKESPSED
                     FLKENANDVFYQVQALLQEAVILIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(15798..16184)
                     /gene="fliS"
                     /locus_tag="SB854_000644"
     CDS             complement(15798..16184)
                     /gene="fliS"
                     /locus_tag="SB854_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HEG0956675.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            complement(16196..18124)
                     /gene="fliD"
                     /locus_tag="SB854_000645"
     CDS             complement(16196..18124)
                     /gene="fliD"
                     /locus_tag="SB854_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HEG0956676.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSQGLANDGGFVNAKLNGTADLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDAQGQYKSDSEA
                     EKIFKSLGWELDTTSSIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTVT
                     DLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGTK
                     GTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAGT
                     LSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGGNTNGL
                     EFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKVE
                     SYNQNNVTGFRLNFSGDGSSDFSIKGDANILKELGLSDVNITSKPIEGKGIFSKLKAT
                     LQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKLN
                     QQLNTVTNMINAANNSNN"
     gene            complement(18127..18492)
                     /gene="flaG"
                     /locus_tag="SB854_000646"
     CDS             complement(18127..18492)
                     /gene="flaG"
                     /locus_tag="SB854_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella length regulator FlaG"
                     /protein_id="HEG0956677.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDGQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(18649..>18936)
                     /locus_tag="SB854_000647"
     CDS             complement(18649..>18936)
                     /locus_tag="SB854_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEG0956678.1"
                     /translation="EFKKHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEER
                     LGVDASAKGEAEGYLRAWPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
BASE COUNT         6615 a         3283 c         2485 g         6553 t
ORIGIN      
        1 aaggcttgtg gaaacatact ttcattttta aaactttcta tgttattttt tgaagttaag
       61 atgtgtaaaa aatttattat aagctcatca ttttcttcta tgtagttttt ctttttgaaa
      121 tcatcaaatg aaagataaga tgttccaaga ttatgaaaag atatgggaaa tttgatgtct
      181 tgaagagttg ttgttttttc aggtaaggat ttatttgcct ctttgaaatc ttcatagttg
      241 attttcatta aaacttcatc ttcttttctt ttaaagataa cttctttgcc agtaaaacat
      301 attccggtag ttttgctaaa ataattaaag gatgttgagg tatcataaaa agcaataatg
      361 tgttccgaag ataccttaaa tatcttcgaa attgttgtaa tttcttgctc ttgcatattg
      421 aaaacaagtt ttattttttt tgtatttaat gaatttttat caatattttc tatgataaat
      481 tggcaaatat tttccattaa tgcatttcct tgtgtttagt tttttgtatt gtgttttagt
      541 cttaaaatta taatttgaag tactgctggt atagtaaccc tataggctgg gctagctaaa
      601 tccaatgcag tccatgtggt cataattgtc caacctaccg gaccagaaaa aagacttaaa
      661 gctcttgtaa gtgttgcatt tgccacaaga gataaacctc ttcctagtaa aacttcataa
      721 cttgatttgc aactattact gcaatttgat agcttttaaa tccacctatt ttaataagag
      781 attgcaatcc cattacaact gtttgtttat taatattaga aatgccaagt tcgaaaatat
      841 ttacaagttc tcttaatgta ttttcatctt gagaattttt taactcttct tctattaatt
      901 tgcataaaag tgatgtttct atggagtttg tgctttcatt ttcatcaaat tttacatcaa
      961 atttttttgc aacatcgcgt agaatttcat tatataaaac tccaccacct cgaaatatat
     1021 taagaatact atttcctcca aatttttgaa attcttctaa aatgagttcg atatattctt
     1081 tatgatctgg ataatgtttt ttataaagat cattattggt taactcttca gtaaaacgaa
     1141 ctttcccgtc tttatcatgg gttaaaattt ttacaagctc atcgagttct ggactgctta
     1201 attcttttaa gaattctaaa tctttatcat atctgtaggc catattttct ccttgttttt
     1261 aaaattttta actttgtatt ttatcaaatc cctcccccca gtcaagggag aagtgaaatt
     1321 tttaagtttt acgccatagc actagcgcta aaattgtgat taaatatata gcacaaaata
     1381 ttatattata aggataaggt tgcatagaaa gaaaaataag tatcgctatg ccaacaaaaa
     1441 ccataaacgc tataaaatac aaactacaca tcaacactat ggcaacaaag ccagctataa
     1501 ggcttaaaat tccaagcatt attcccattg tttattccac ataggagaac tccacacaga
     1561 aggaaaaata tactgaggaa aagtttgaaa ttttgtttgc agataaaatc tctgtgtttt
     1621 tctctccatg ctttcgctta tcatttttac aaccgctaag tcattttttt cgctttgtgt
     1681 ttccaaaaaa gcactcaagc atttaaattt tttagcatag tcgatcactt ttatcatttg
     1741 atctttataa gacgacaaaa gaaattctgt tttgtgatta tttttagagg taaaattttg
     1801 ctcaaattct aaaaattcct tagaattaaa atattttgaa aagccgctat aacactccat
     1861 gcattcgcaa agaaattctt gaatttgatt tttcttttgt tcgatttcaa gctctctttt
     1921 gagtttgtat tcttcggtat tgattacatc cttacagctt ggaacaatag catgtgtatc
     1981 aaattttctt tctggcttgg ataatttttc gtataatttt tttatgccat atcctgtagc
     2041 tgtaagagct atactaccaa atgcgatttg ttttaacatt ttctctcctt gttttaaaat
     2101 aacaaagaaa gtataaaaca cccttgcgac aggttgtgtc gtaaaaaata actttaaaat
     2161 attaaaaact tattttatta aagctagcct gtaaattcag tagtttcata gcctataggt
     2221 ttatctacaa aacaagattt ttcttttaaa aatacaactt ctatagttcc aacaggtcca
     2281 tttctatttt ttccaacaat aatttcagca ttttcttgca taggatttgg tataaaaagc
     2341 ctttgataag ctttgccttc agctttagct ttattctctc tttctttttc ttcttgttct
     2401 ctataaacct catcgcgata tacaaacaaa atagcatccg catcttgctc tatagctcca
     2461 ctttctcgca aatcactcat caaaggacgc ttatttgccc tttgctctaa gccacgatta
     2521 agttgtgaaa gtgcgataat aggcatatca agctccctag ccaaaagctt aagtcctctt
     2581 gaaatttcac taacttgcaa atgtctatca ttaaaatttg aattactcat cataagccct
     2641 atatagtcaa tcacacaaag tcctatactt tcatcttgag attttaaacg ccttaaaata
     2701 gcccttacat cagcaatagt tgcataacca ctatcgtaaa tatataattt cttttgacta
     2761 taatcattgc aagcatctcc taaacgctcc cattcatcat cgtttaaatc tgcagttaaa
     2821 attttttgca aaggaataga agttttagaa gatagcattc tttgcatgat ttgagttgca
     2881 ggcatttcaa gagaaaataa agccacgcct tttttttgtc ttaaaacctt atcaatgaaa
     2941 tttaaacaaa gagttgtctt tcccatacct ggacgcgcgg cgattattat aagttcaccc
     3001 cctttaaagc cttttgtcat tttatttaga ccttcaaaac ctgtatcaag ccctataata
     3061 cctttatttt ctaaagtttt ttgcttttta aattcttcaa aaagttctga tattaccata
     3121 tcaacatctt taatatctct agaattcaca cgatttgtaa tgctaaaaat ttctttacca
     3181 atttcatctg cgatttcact tacagcacga tcttcattga tacgagttgg caaaagatgc
     3241 gcaaaactca agagctgtct ttttacagac ttttcgcgaa gttcatttac ataagcaggc
     3301 aaatctatca tagaaggagt ggcaagaatt tctgctaaaa tttgctcatc tattttttta
     3361 tgttttctta aaaaacttac agaaataggc tctttgttat tgctacaagc tataaccgct
     3421 ttaaaaatat cttggtgagc tttaagacta aaatcttttg ggctaatatc gcctgctata
     3481 ctagcataag cttcttcact catgatacaa ctgcttaaaa tagctcgttc taaatccaag
     3541 tcataatact cttgctgcac taaatttcct tataaatata aattaattct aaaaattcta
     3601 tctaaaaaaa cttaaattat aaaacttaat ttttttataa atatttaatg taatattagt
     3661 tacaattata aatgtaattt aattacaaac aacaaacatt tcaaggagaa catttgaaaa
     3721 aatatttatt ttcctgtgtt ttagcctcca ttttaaccca atcagctacg gctgtagaat
     3781 ttcaagaagg ttttagtgga aatttaagca taggtgtggg tgcaagggat attaaaagta
     3841 atatttcaac cttggcaaac agtgattatc taagcagtca caatgctgat aattcagact
     3901 cctctttcat tccttttatc ggtgcagaac tttactatgg taatcttata gataatgata
     3961 gaatttttat taaaaactac aatggaagag atatcagcgg tatagcttta ggctacgaaa
     4021 gagcttattt agagcgtttt agcacttctt tttctgtgat ttcctcttta agagaaaaag
     4081 cttatgcaaa tccttatgca ataggaaata gagaagaaac tgatgttgat agatatggtt
     4141 ttaaaatctc tcaactttat gaaagtgatt ttgggaaatt taccacttca tatttattta
     4201 gcaaaaacaa atatgataaa gacactatcg cacaaagctc tttaaaaagg gaggggtatt
     4261 atcacgaatt tgaattaaac tataattata gcttattaaa cctagggtta aattatgatt
     4321 acaatgatgc agacggaaaa gctcaaagct attcaagata tggttttagc atagggacaa
     4381 atttggcttt tgctaatgat tacatcttca ctccaaattt aaatcttagt aaatatgaag
     4441 cagtaggaac tgatcctatc ttccacaaaa aacaagatgg taatatagtt aagcttaatc
     4501 taaaagttgt taaaaatcaa tttttgggtt ataacggact ttatggtttt gcaaattatg
     4561 gcatagaaaa aagaaatagt gatataggat tttatgatga aacctatcaa attgtcctaa
     4621 ctggtatagg atataaattc taaaaattat aaaaaagctc ctttgataaa atttaaaaaa
     4681 gatctatctc ctataaagat agatctttaa aaattctttt aagaaaaatc caagctaaaa
     4741 tcaaaacaca aaattcagca aaaaatggac ttagccatac tccatttaaa cctataaaat
     4801 aagataaaag caaaagaaaa aacaaaggta taaataaatt ttgcgccaaa cttaaaacca
     4861 aggaaaagct tgccttatta aaggctgtca aaaaagaacc acttagaaca ttaaaccatg
     4921 caaaaaaata attaaaagca aaaagcatca aagctgtata agcaaaagtt ttaaattctt
     4981 gattgttttc ttttgtaaaa agcgtgatta aattttctcc aaatatcaat attaatacta
     5041 tagaaaataa agataaaaat cccccagcaa aaaataccac ttttacaata gctttgattc
     5101 ttgaaaaatc ttttttagca tagttgtaac taagcgcagg ctgcattgca tcacccatag
     5161 caataataag cagtataata aaactatcaa tatataaaac tatagaaaag gctgccacgg
     5221 cttgagtatc agaaattttt aataaaacaa aatttgcaaa aatactatat aaagatcctg
     5281 aaatattgcc aaaaaattca ctgcttccgt tataaagaat atttttaaaa atttttaaat
     5341 tcatatatag gctcgaaatt ttaagctcta aattttgaaa caagaaagga aaaattccaa
     5401 aaataccacc taaaacaagt cccaaacaag ttgcaagagc agctgaaaat aagccccaac
     5461 ccaactcgac tataaaatat aatcaagcac tatattgctt aatgctataa tcacattcat
     5521 taccatacta taagcagttt ttccgcaaat tcttaaataa ttatccaaag caaaagaaag
     5581 catagtaaag ggtgcaaaca aagcaaaaac aaacatacat tctttagcca tcgttttaat
     5641 ctcatcgcta acatttaaac aatcaatcaa aacaggtcct aaaaaatact ccaaaattcc
     5701 gataaaacaa gagattataa agataatcaa catacttgag ctaaatatct ttctagctaa
     5761 attcttcttg cctaaaccta aatgcataga aatttgcact gctgatccta tggctatcat
     5821 atcagccaaa gcaaaagaca tcatgataaa gggaataatc aaggctagtg ccgctaaagc
     5881 atcgcttcct agatattttc caacaaaaat tccatcaact atataataaa aagaaataaa
     5941 agccatactt ataacatttg gcacggcaca ttttacaaaa agcctaaaag ggcttaaggt
     6001 gctaaaaata cttgacataa taatccttaa aatatttaaa attaaaaata ttttaaaccg
     6061 ctaatataat gccaaaagtc ctagtatgta agaatttaaa taaagtaatt tcgcaataag
     6121 tttattaata tttattttat tttgcatatg aattttctag attaaactaa aataaaaatt
     6181 tagcccaaag gctaaatttt aaagcacaga aagaattttc acagcgtcat ttaaccctgt
     6241 aactatactt gctccatttt tagtagcaat atctcctgct acaaagatgc ctttaacatt
     6301 gctttgtttg ttttcatcca ttaaaggcac gcctttatca tcaacattaa tcccacattt
     6361 ttgtaaaaaa tcaagtggag tagaaccacc aatagcataa atgattctat cataaatatc
     6421 gcttgtacca tcggtaaaat ttactttagc tttgccatta tcatcttcta cttcattaat
     6481 gtcaattcct agttttaact ctaccttacc cgaatttcca gcttcatgaa tatctttaag
     6541 atttatatca tttaatcttg taaattcttt tttacgataa caaaggctaa cttgatttga
     6601 atttgccaaa tccacagcgt attctgctgc tgaatttccg ccacctacaa caagaatttt
     6661 ttcatttccc aaaactgaat tggcattaaa attaatgatt tttgttaaag tcataggaag
     6721 tttgtaatca ggtttattag gcttacccat tctacctata gcaacaataa tgtttttaca
     6781 ctcataaaca cctttagctg tacttactaa aaaaactcca ttttcatttt taacgctctc
     6841 aacttcagaa ccaaattcaa cttctatatt gtgctctttt aaagcgtttt gaaaagtttc
     6901 tatagtgctt tctttggtgc catcttcaaa aggaacatgt ccgtgattgg ttccttcgca
     6961 tcccttataa gctttatcta ctcttttgcc atccttataa aattgcatta aagtttgaca
     7021 aatgttattt gatttttcta gtatcaaaac ttctttgttt ttaagcttgg cttcaactgc
     7081 acagcctatc cctgttggac ctgcacctac tacaattaaa tctatttttt tcatttatat
     7141 ttacctttca attctaaatt tttttgtata atttatcaag ttttttgtaa ataaaggatt
     7201 aaaaatgcga aatttgcttg aaaatattaa gaaaaattct caaaaactac ttaacttaac
     7261 acccaaagat aaagaaaaaa ttattctaaa attagctcaa attttaagag aaaatttcaa
     7321 aattatccta gaagcaaata aaaaagatat ggcaaatttc acaaaaagcg gagcaatgaa
     7381 agataggctt ttgttagatg aaaaacgtat tttagctctt tgcgaaggcc tagaaaaaat
     7441 cgcttacatc gaagatccta taggcaaaat ttctaaaggc tggaaaaatt atgcgggttt
     7501 gagcatacaa aagatgagta ttcctttagg actcatttgt gttatttatg aagcaaggcc
     7561 tagtcttagt gctgaaatca tagctttaat gataaaaagt tctaatgctt gtgtatttaa
     7621 aggtggaagt gaagcaaaat ttacaaatga ggctatattt actcttgtta ataaagtact
     7681 taaggaattt gatttgcaag attgttttgc tatgtttacc caaagagatg agatcttgca
     7741 aattctagct tttgatgatt taatcgatgt gatcatacct cgcggaagtt caaacatgat
     7801 acaagaaatt gcaaacaata ctaaaattcc tctcattaag caagataaag gcttgtgcca
     7861 tgcttttgta gatcaaagtg ctaacttaga tatggcttta aaaataatcc ttaatgcaaa
     7921 gtgtcaaaga gtaagtgttt gcaacgcttt agaaacgctt ttaatccatg aaaaaattgc
     7981 taaaaatttt ataagtcttt taatccctga atttgaaaaa tttaaggtaa aaattcacgc
     8041 ccatgaaaat gctttggctt attttaacaa ctcaaattta gaagttttta aagcaaatga
     8101 aaataccttt gatacagaat ggcttgattt tgctttaagt gtaaaattag taaaagattg
     8161 caatgaagct atagaacata tcaataaaca cagctccttg cattctgaaa ccattatctc
     8221 aaataatgct tcaaatatcg ctaaatttca acgccttata aactcatctt gtatttatgg
     8281 taatgcttca acgcgtttta gcgatggagg agaatttggc tttggtggag aagttggaat
     8341 ttcaaccagc aaattgcatg caagaggtcc tatggggatt gaagatattt gcacttataa
     8401 atatataatc agtggggaag gacaaattcg agagtgaata aaatagaaat gctaaagcaa
     8461 cactttaaag aaattgctaa actaaattca agcgaacaag tttggcaaat gccttttttt
     8521 gcggctttag gtgtgggtat agttttaggg cttagtgtat tttttggaaa attaaactat
     8581 ggactcattg ccatgatagg agctttatct tttttatatg ttccaaacac tcctttatat
     8641 catagaatgg ctgttgtgat gtgctgttct tttggcatag tttctagttt tttcttagga
     8701 attttaaccc attttttgcc tgcaattttt gccttcatcc ctataggaat tatggccatg
     8761 ggaagttcta ttttaattag atattataac attggtgcac ctggatattt tttctttgta
     8821 ttttcttgtg ttttaggagc ttattctcct tttgaagcta aggattttat ctttttagtg
     8881 ggtcttgttt ttcttggggc aatggtagcc aatttaatgg ctttgttata ttctatcgtt
     8941 gtgatttatg gatttaaaaa tgctttacct agcgaaattc cacctagaga atacataggt
     9001 tttgatgcag tttttgtgga ttctttgatc atgggttctt ttgtggcttt ttctatattt
     9061 ataggaactt ttttagaact tgaaagaagt tattggatag ccatttcttg cacagctatt
     9121 atgcaaggcg taactttaaa ctctatatgg attaaacaaa ttcaacgcat cataggaacg
     9181 gccttaggag tatgttttgc atggtggctt ttatctaaac aatttcacaa tatagagctt
     9241 gttttactta tgatgtcttt gttttttata ggacaatttt tagtcaatcg aaattatgct
     9301 ttagctatga ttttctttac tccttatgct acttatcttt cagaagcagc taattttatg
     9361 agtgaaaatg cagatacatt gatactcgct cgtttaattg atgtcgtaat aggaagcatt
     9421 ttaggacttt taggtggttt tgtaatttac aaaccttatc taagagtaca ttttgaacgc
     9481 attgcaaaat acatctttag aataaaacaa aaagcttaaa agtcaaataa agcacaagca
     9541 ttatccccta aaatttgctc ttgttctttt ttagatacga caacttcatt aaaagctact
     9601 agagccgatg aaaaattaac atttgattca aaatttgtat gtggccaatc gcttccaaaa
     9661 acaaaattgc taagtggaaa atgttctttt aaaatttcat atattttctt tgcaaatttt
     9721 acagcttgtt cattattagc atagtctatt tttgctctat aaaaaccgct aattttaaaa
     9781 aatattctag agttttttaa gcaaattaaa tcctctaaat ttgttaagtt tgcattagct
     9841 cttgctaaat gatcgataac aatattacaa ccataaggaa ttaaattttc aacaatatca
     9901 acaagattat tatctaaatc tctttgaatt tctatttgca ttttaagctt acttaaattt
     9961 tcaaaaaatt gagtccaaac catactttta aaatttggta attctttgcc aattaaattt
    10021 aatctaactc cacaagcttt tctttctttt agttttttaa gctcatcaaa tttaatattt
    10081 tcatcaacca caactatagc ttttatattt tcatcttttt ctatactctg aagcaaaaat
    10141 tcattatcaa tacctaaaaa acttggctga actaaaaccc ctttattaaa atcataatga
    10201 tctaaatttg ctttataatc tttaaaacta gcgtcataat caggcttata tcttgcattt
    10261 gcaaccgtat ttaacttttt caaaaatata tgtgcgtgag tatcaatctt cattaaatta
    10321 tccttataaa ataaaactca ttataatagt agctaaaatc gccgctataa atcctatagg
    10381 cacagcttta ataagtaaat ctttaaataa tttttcctta tatttatcag ggcaagatcc
    10441 taaaattaga cttcctccag aagaaaaagg agaaatagca gaagcttgag cccctacaac
    10501 aatacaagaa aaaagcaatg cctcgcttaa tccactactt gcagcaatgc ttggaactat
    10561 aggaaaaagc gctggagtaa ccacacccaa agtacttgaa aaaagcgaca taaaagctgc
    10621 aatagcacac attattaacg gaataaaaat cacattgatc tcattttcta caagatctga
    10681 aaataatttt atagctcctg cttcaaccgc tatgctaatt aacatcccta ctccacaaat
    10741 cgttatcaag gttccccaag gaattaaagc aacaacttgt ttctcatcgg ccaattttaa
    10801 aaataaagca atggcaacaa aaatcatggc tatcatagct atatctattt ttttattaaa
    10861 ataactaatt gtctcattat gtggaaaaat aatatttagc acaggaaaga ttaaaacaac
    10921 aacaatcatc ataaacataa gaattaaagt agttttttgt ttataatcaa atgaatcagg
    10981 ttttaaaata acactgattt ttatattatt tttaaaagca ttaaacacaa aaaaagataa
    11041 taccacaata ggcaaaatta tagtaaaagc aaaaataata ctagaattta caaaagcttc
    11101 atttgcttca atgcctgaat tttccatcaa tcctcgaaaa ataatcccac tttgagaagt
    11161 cataaaattt gctcctccca aagcaccata gtttatagcc atagctccag caattttgct
    11221 taaaccgatt ttatcgcaaa gtaaaaaagt aagtggtgcc ataaaagcta aaaccgtata
    11281 aaaacctgct cctaaagcag ctataatagc actaaccaca aaaataacaa aaggaagcaa
    11341 ataaggatga ttagcaaaac gatacatcaa atgtccagct aatttttcaa gagttccatt
    11401 tacggttgca aaattataaa acaatgaaac agcaaaaata acaaaaaata tagaaatagg
    11461 ccaaaaagct atgatttttt taggagctaa atccataaaa aaagctccta taatataagc
    11521 aaaaatcata gcaaaaattc caacattatg tctagtaata tagcccaaaa taatagccac
    11581 tataatacta gagatgatta aaaaaaccat tatcatcctt taaaatatta tagggcttat
    11641 aatatcaaaa aatatatttt tcaaagcata aaaacaaaat ctaaatttaa aaaatatcta
    11701 tttagtaaca aatttaccca tcttatgaaa ttttttataa aatatccaca tccatagcaa
    11761 gcaaagcaaa gcttcctagc caatgcgacc caagataatc atcttctata tgagctatgg
    11821 ctttatcaaa atgctctgta gcattgtttc ttaaaagaat ttttaaattt tcatcgcaaa
    11881 aatttgaaag tattttaaaa caccaagcac gacttaaatt tagcccatct agatgtgcta
    11941 ttttaccatc gctcctatca ctcacactca caggggtaaa taaagttgca ggctcttttg
    12001 cttctaaatt tggcaaatat gctttaaaaa attttacaaa atcattttta tgtaaaacag
    12061 cacttaaaag caccgcttcc atcaaaacag gagataaaaa ctcatctcca caaggctcta
    12121 aagcttgcat atttttatca tttaaaaacc actttttagc actttggatg atgcaatact
    12181 ccaattcttg atctttttta aatcttgcat attctaaagc aaaatacaaa gcaaaagagc
    12241 tattaaaatg ggttccaact cgtataggat aatccatctt aggtaaaaac tccttaaatt
    12301 ctttaacaaa gaaatcagct atgccttcta aatttttagc ccaaatttca gctttgtcat
    12361 tttctttagc aagtaaattt atctccaaag tcagttttaa aaaccatccc catccataag
    12421 gtctttcaaa acctttgtgt gcagggtttt gaagatattt aagctctcct tctgcttttt
    12481 ctttgctaaa ttgagaatct agagctttga tgatttcatc ctttggagca aaatgagaaa
    12541 aatcttttaa aattttcacc aaaagccagt gagaatgcac gctagaatgc caatcataag
    12601 aaccataaaa tataggatac ataagttttg gtggtttaat atcattgata tcattaaaag
    12661 aatgtgtaat tttatttggc aattctctaa aaatattttc tagtgcaata aagctaaatt
    12721 gttttataaa tttttccatt gtttctcctt aaaatctaaa agctaaaaaa tacattaaaa
    12781 agatattagc cacaagcaaa acaagtcctg acataaactg ggctttaatt acgccatttt
    12841 tatcatccaa atttaaaagt gccgcaggaa ctatattaaa atttgcagcc ataggcgtca
    12901 ttaaagttcc gcaaaatcca ctaagcattc caatcgcacc tataatagca ggatttgcat
    12961 gcatttgtat aattaaaatc ggcaaagcaa tagcagcagt aatcacagga aaagctgcaa
    13021 aagcattgcc cattactata gtaaaaagcg ccatagcgat acaatacaca gctactgcaa
    13081 taaaagcatt atctaaacta atataactag ataaaagttt agatacttga tcgcccattc
    13141 ctgtagaaac aaaaactacc ccaagtgtag ccaaaatttg cggtaaaagc gctgcccaac
    13201 taatgtgatc catagtatgt gctgcatctt taacagctct tttaggagaa gccttaaaca
    13261 taaaacaaac aactactgaa gaaataatta tacctataat caaagccatc aatgtagcat
    13321 ttttattttc aaaaaaactc aaatagggaa ataaaaaagt cccaataagt gtaatcaaag
    13381 gaaccattaa agcaggaata aaaagtttat ttttataaat atttgcatgt tttatctcgt
    13441 attctttttc ttctttgcta acttcgatct ttgctggttt taataaatta aatcctgcta
    13501 taagtgctag taaaatcact atacaaccca tcacaaaatg aggcaaaact cctgctagta
    13561 aaaaagtaaa actataactt atccagaata ccccgccgct tattcttgat tttatatctt
    13621 tagcttgatt agaaaaactt aaaattccaa aaactaaaaa taaaattcct acaatataat
    13681 aaagcaaatc aagacttatc atcactcaac cctttataag ttttttctaa tcttttatca
    13741 aataaataaa gtctagaaca atggataatt aaagccaaaa ttccagttgg tatagcccaa
    13801 actgataaat gcaatggctc aacaataata ccattgctct cataaaaagc tttaataaat
    13861 aaaatagaat gcacggctat aaaaatatcc tctccaaaaa atacagcaac attatccgtt
    13921 cccgcagaaa aagctttgat tttttgacta tctttatgtg ttaagttttt aaatttaagc
    13981 ttagctgcag cttctgccat aggggctatt aaaggtctta tcatctgtgc atgtccgcct
    14041 aaagataaaa gccctaaagc tgcagtaact tgtctaaaaa caaaataaca cattaaaatt
    14101 cgtcctgtac tggcaacttt tattttggat attaaatttt tagcctgctc tcttaagcct
    14161 ttgcgttcca aaacagcaag taaaggtaaa ataagccaaa ttatagcaac atagcgatta
    14221 tctacaaaag attttcctat atcactaaca accttaacaa aatcaaaacc tgaaacaagt
    14281 ccagcataaa ttccaactga agttaccact aaaaaggggt taatctttaa agcaaaacct
    14341 aaaacaatca aaggtataga agcaagaagt aaccattcca tcaaccatct ccacaatatg
    14401 aattagaaat attatagaaa ttttaaattg aagaaaagtt taaaaaaata tttttaagaa
    14461 tggaatgaga aattaagtaa caaaataaat tttatataaa tttaaaaaag ccttggaata
    14521 gtccaaaagc tttttttgta ttatttgttc gctctttcta tatactcacc acgcacagta
    14581 tcaacgcgta taacttcacc ttctaacaca tgaaaaggaa tttgcactac tgcgcctgtt
    14641 tccaatgtag ccggtttttt atttgatcct tgagtatcac ccttaaaatt tggagctgtt
    14701 tcgatgattt tgagttcaac aacttgtgga acttctacac cgatagcttt accattatgg
    14761 aaaagcacat ctaccatcat accatcaagc atccattttt tcgcctcacc tacatcatca
    14821 tcactaatag ctacttgttc atatgtttgc gtatccataa attggcaatt ttcaccatca
    14881 tcataaagat actgcatagt tttatcttct aaatttggag cttcacattt atcacctgca
    14941 tggaaagttt tttcaagtac tttaccatca ataaaagatt tgattttaat acgcacaaaa
    15001 gcaggacctt tgcctggttt tacatgctga tactcaacta ttttaaaagg aattccatcg
    15061 atttctattt taagtccctt ttttaaatca cccattgaat aagatgccat aaatttcctt
    15121 tgttaaaaaa taaaaaacaa ttttatcaaa ttttgattga tatcacaata aaattatttt
    15181 atttgatgaa aaaataagta aaattacgtt aaaatccaaa tttaaagcat agtaaatgct
    15241 cgcttctttt taggagagga aagtccgagc tgctaaagac aaacattcca tctaacagat
    15301 ggctagggta acctaaggga tagtgcaaca gaaagaaaac taccacgcaa gtggaaaagg
    15361 tgaaacggcg gggtaaaagc ccaccagcga ttttggtaac aatttcggct atgtaaaccc
    15421 aatgtgcagc aagaagggat ggttagcgtc tttgttttaa cccttcgctt gattttgttt
    15481 gcaaaaacaa aactagataa atgagcattc aagacagaac tcggcttatc gctatgcttt
    15541 tttaagattt aaaatatgtc aacgcttttt gaaatttttg aatttcaaca gcttttgttt
    15601 ttttcttttg ttcaatcagt ataacagctt cttgcaaaag agcttgaact tgataaaata
    15661 catcatttgc attttctttt aaaaaatctt ctgaaggcga ttctttggct aaatttttaa
    15721 taaaagcttt catatcaagt tcatcaagta aattttcaag tttattgaca tcttcttgga
    15781 ttaatgcaag tttaaaatca ctgagccact gtttcattgt tatgcacttc tctccaagct
    15841 tctagcaaac ctttggttac atttataact tcattgattc tatcttcgtt attttctaaa
    15901 tttgccaaag ataaaagttg aatttctctt gtgtaaagcc cgcttaaata atgtgccact
    15961 tctccgcctt tttcatagtt taaagtatta ataagctcta taaaaatagc cgtggttctt
    16021 tttacaaaat acactctttg ttctatatct tcatttctta tggctacttt agctcttgca
    16081 caaaaacgca aaattccctc ataaagcatt tcaataagtt tttgcgggga ctctatcccc
    16141 acttgatttt gagaataagc attataggct aaattatttt gcatcttttt tatccttaat
    16201 tattagaatt gtttgccgca ttaatcatat tagtcacagt atttagctgt tgattgagtt
    16261 tatttaaaat actctcatat tgcaaccatt gattcgccat tgtatcatat cttgtatcaa
    16321 tcatagcctg agtcgagtct ttagaggtat ttaatgattt aatatcattt gtcaaactct
    16381 catcatattt tgtaattgaa ccatcttttc cagtcatctc ttgcaacgtg gcttttaatt
    16441 ttgaaaaaat acctttacct tctataggct tagaggttat atttacgtca gacaaaccta
    16501 attccttgag aatgttagca tctcctttga ttgaaaaatc cgagctacca tctccactaa
    16561 aattcaacct aaaccctgta acattgtttt gattatagga ttcaacctta acttttaagc
    16621 cttcaatacc tttactgttt atatgattag ctaaattttg aagcaattct tcctctgttt
    16681 tccctgttaa tttaaaatta gtaccatcag aatttttaga taaatcatat gtttgattat
    16741 taaaaactat agtaaaatct cctggtttaa attctaaacc attagtatta cctccattgg
    16801 aattaagata tttacttaaa cttcctgtct taattacctc tcctgtgtga ttaatgtctt
    16861 cgtatttagt aatatttgaa aaaaaacttt cagtagagtc tggatcttct ttaacttttt
    16921 gttcaaattt agaagaatca aaactcaaag tgcctgcatc atttaaactt aagccaaaat
    16981 cctgcataga aagcataacc ttagtgttta ctttattacc atttgcatct tcagtagttc
    17041 catcaacaac ttgagaatca aacaaatcag caagaatgct tgagcgtatt gaatttactt
    17101 cactgatgcc ttgtaaagtt ccttttgttc cagtttcact attatagtca gttgcagcat
    17161 taagattggt tactaaatca ttataagcat ccaccaaatc ttgcatggct tttgtcacac
    17221 cttcaaaatc ttgctgtaca tcaaaattaa tttcacctgt tttatttaaa gttaaagtca
    17281 ttcctacacc aagatcggta acagtattac ttgatctaaa catcttaata ccatcaagtg
    17341 tgaattctgc attttgcgca gtttggatat gcaaagaagc atccttaata ccataacctt
    17401 ttttatcctt agctggatca atagaactcg ttgtatctaa ttcccatcca agacttttga
    17461 atattttttc tgcctctgaa tcacttttat actgaccctg cgcatctttt tttcctgcat
    17521 agaaacttat cgcactgtct tcgcctgttt ctttactggt taaagttaag cggtaaggag
    17581 tacctttctc tcctgtgttt acaatcttag cgacaatctc tcctccacta gcttcattaa
    17641 ttttatcagc taaatctcta taggttgtgt ttttatctac cgtaacagta tattctttgc
    17701 catttgaaaa aaaagtaaga tcggcagttc catttaattt tgcattaaca aaaccaccat
    17761 catttgccaa tccttgactt tgatatacat ctttttgtgc aagttgagta acattgatat
    17821 tcatgctttg taaagcaaca cccgaattaa ctgtaagact tgctggagga ttatcgctaa
    17881 tacttcctac aacttttctt ttcgcaaaaa ccgtagcatc ggctaatgat gaaacagccg
    17941 tctgaaaact tagtaattta gttttgattt ctgttaaatc tttttgtttg gttgtatttt
    18001 cttcaatttt tttagtataa ggatcaatac gagctttttg ctctgcttct tttaatttat
    18061 ctatagtatc ttgagttaaa accccagaac caaatcctaa actagataga ctaccaaatg
    18121 ccatttttaa ctctccttat caaatatcat tcctatcaca tccctaaaat actcagctaa
    18181 tctcatagct tcttcactag gaatttgacg gatttccctt ccagtgcttt tttcagtcac
    18241 gctaatatac atagaaccga ttttatcact ataaccaaaa cgaacattgg tatctagaga
    18301 atccatttgc tcatttaact tttttgtaat atcagccaac ttttcactca cacctcgttg
    18361 ctgtccatca tcgccttctt ggccttgact tctatcggtt tgaatgttta aactagcctg
    18421 tgtctcactt gttctttggc taatgtttgc caaagctgta tccatttgcc catttgcctt
    18481 cgatatttcc attttaaaat cctttttaaa atttcctatt gctagttaaa agcttatatc
    18541 gacaaattta taaatttatg aacacctata aagaaaattt tatttttcaa taataaaaaa
    18601 ataataagca aaaactgtgc caaaatttta aaataaatct caattatctt aaaaaatttc
    18661 aaatttatta aaaagatctg gattattttc taaaatatta cgcaagatca aatcttctat
    18721 cacgctttta gtgcaatctg tttgcttagg ccaagctctt aaataaccct cagcttcacc
    18781 tttagcactt gcatctactc caagtctttc ttctttgata aaaatatctc ttttagcatc
    18841 tatattattt accacacgcc aaacaagcat ataagaattt tcaagcttat tttcagcatc
    18901 taaaaacact aaaatcctaa aatgtttttt aaattc
//
LOCUS       DARBBO010000023        18614 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.023, whole genome shotgun sequence.
ACCESSION   DARBBO010000023 DARBBO010000000
VERSION     DARBBO010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18614)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18614)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18614
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.023"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(61..363)
                     /locus_tag="SB854_000648"
     CDS             complement(61..363)
                     /locus_tag="SB854_000648"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEG0956679.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(360..1091)
                     /locus_tag="SB854_000649"
     CDS             complement(360..1091)
                     /locus_tag="SB854_000649"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEG0956680.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSSALLEHEHPAIIKENICSPGGVTV
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            complement(1091..1480)
                     /gene="fliW"
                     /locus_tag="SB854_000650"
     CDS             complement(1091..1480)
                     /gene="fliW"
                     /locus_tag="SB854_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HEG0956681.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
     gene            1641..2288
                     /locus_tag="SB854_000651"
     CDS             1641..2288
                     /locus_tag="SB854_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HEG0956682.1"
                     /translation="MKKGIFLLVFLSVFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            2305..4680
                     /gene="lon"
                     /locus_tag="SB854_000652"
     CDS             2305..4680
                     /gene="lon"
                     /locus_tag="SB854_000652"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HEG0956683.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDVPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLIPDELKKHGLKSNELSIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLV"
     gene            complement(4741..5001)
                     /gene="rpsR"
                     /locus_tag="SB854_000653"
     CDS             complement(4741..5001)
                     /gene="rpsR"
                     /locus_tag="SB854_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEG0956684.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(5012..5563)
                     /locus_tag="SB854_000654"
     CDS             complement(5012..5563)
                     /locus_tag="SB854_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEG0956685.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQSP
                     QHEEKLKEIDIDAYDSDDTNLPF"
     gene            complement(5572..5949)
                     /locus_tag="SB854_000655"
     CDS             complement(5572..5949)
                     /locus_tag="SB854_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEG0956686.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLTKNSAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            complement(6036..6902)
                     /locus_tag="SB854_000656"
     CDS             complement(6036..6902)
                     /locus_tag="SB854_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HEG0956687.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNKEKNKHLKDFFSQRPYACYNATRRFCDKSFKANERVKTLIYDVDKGLACFKFLPEE
                     QIIFSFDEDFELFLGYNYNVCEEGFWAFSLKFKKYTILQCNFCFTLENNLLLSCIQGH
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQATLGVHEKNQIRSQKGK
                     EKGYFVDYQKIWLENGGELIKINKHKYYKLHHSQKNLEEIPSQKRSMYKKRFAMLEEI
                     KTNLDKTLSIQD"
     gene            complement(6895..8001)
                     /gene="rseP"
                     /locus_tag="SB854_000657"
     CDS             complement(6895..8001)
                     /gene="rseP"
                     /locus_tag="SB854_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEG0956688.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGNIAPNSAAQEIGLQ
                     KNDTILEINGIRIQTFDEISKHLSLDPLKILINREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKV
                     PQRTFEYLSYTGMAILLSLMLFATYNDISRIIGE"
     gene            complement(7998..8534)
                     /gene="pgsA"
                     /locus_tag="SB854_000658"
     CDS             complement(7998..8534)
                     /gene="pgsA"
                     /locus_tag="SB854_000658"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEG0956689.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
     gene            complement(8659..9264)
                     /locus_tag="SB854_000659"
     CDS             complement(8659..9264)
                     /locus_tag="SB854_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG0956690.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     IQKRLDAYMPFLKSLNQEEKISYAREQAHIALASILYSANALNIASCTIGGFDKQKLN
                     SYLSLDIQKERSSLVVALGYCNDEKNPQKNRFSFDEVVKFI"
     gene            complement(9264..9884)
                     /locus_tag="SB854_000660"
     CDS             complement(9264..9884)
                     /locus_tag="SB854_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEG0956691.1"
                     /translation="MNFKELISKRRAYKLFNDKKINEKDLHFILESGVLAPSSHGFEP
                     WKFVVLEQKEHNLKLSTLCYNQQNVASASHNIIFLARKDLQSKDEFAQKQVRRFSSSS
                     EENFQKILEIYTHKTNAMNDNELYHYAQLQCYLAMMQMSLAAMSLGIDSCMIGGFEKA
                     KVDDFLNLTYPFETAVILSLGYKAHKPKYSTQRLNFNEVVEFYKEK"
     gene            complement(9948..10372)
                     /locus_tag="SB854_000661"
                     /pseudo
     CDS             complement(9948..10372)
                     /locus_tag="SB854_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
     gene            complement(10384..11472)
                     /locus_tag="SB854_000662"
     CDS             complement(10384..11472)
                     /locus_tag="SB854_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HEG0956692.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQNKTDK
                     DLPFLLENLLNQYDFITLFTSSLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     SIKSTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHEWLGISESVLENNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKINSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            11571..14324
                     /gene="ileS"
                     /locus_tag="SB854_000663"
     CDS             11571..14324
                     /gene="ileS"
                     /locus_tag="SB854_000663"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEG0956693.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYEKMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLVFASALLNSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEYVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDSGCYDETLRAKGLLPSHLLEEFIGLHIFKANEKILELLGEKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYNAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINENAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLEV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            14318..14428
                     /locus_tag="SB854_000664"
     CDS             14318..14428
                     /locus_tag="SB854_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956694.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            14425..15786
                     /gene="gatA"
                     /locus_tag="SB854_000665"
     CDS             14425..15786
                     /gene="gatA"
                     /locus_tag="SB854_000665"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEG0956695.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKH"
     gene            15796..17253
                     /gene="guaB"
                     /locus_tag="SB854_000666"
     CDS             15796..17253
                     /gene="guaB"
                     /locus_tag="SB854_000666"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEG0956696.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPNANKDNFGRLRV
                     GAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTIKAIKTKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            17250..17423
                     /gene="xseB"
                     /locus_tag="SB854_000667"
     CDS             17250..17423
                     /gene="xseB"
                     /locus_tag="SB854_000667"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEG0956697.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            17416..18192
                     /locus_tag="SB854_000668"
     CDS             17416..18192
                     /locus_tag="SB854_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEG0956698.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGANLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKIKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            18204..>18614
                     /locus_tag="SB854_000669"
     CDS             18204..>18614
                     /locus_tag="SB854_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HEG0956699.1"
                     /translation="MRKILLQILIFSVLFIVAFTINRILMQNSFIPAGLISDKNEIFL
                     MYLLGVFHDIRFLSAAFLPFLLCGFLSLIFSNIKINNKLVIYSKNFYFIFSSVYIIVL
                     SCLCIGFSYAKYYYYEIYKTKFDIFMFTLKDDNTK"
BASE COUNT         6528 a         2514 c         3181 g         6391 t
ORIGIN      
        1 tagttataaa agtaaaaagt attagtgata ttataagttc aaaaagtgta aaagctttgc
       61 tcattcttta aaataaacgc tataattttg atcttgaaag tataattttt gaaattgaaa
      121 tataccatca ttaacaaact gttcttgtaa aactataggt tttaaggctg aagtttgaag
      181 tatgatggtt ttaaaaatag gcttttcata taattcttct tgaagtttat agagtctttc
      241 aaaaatattt aaattttcat agtttttgta aagttgaata tagtaataaa aaatgccaat
      301 gaaaattaaa gatatgatcg ttatagcact aatgctttct ataagtatga aagccttttt
      361 catttagcgc tgctagcatt tatggcttca aaaaaacttc cgcgaattcc tttttgttcg
      421 agtattttta tgccttttac tgtaactccg ccaggggagc aaatattttc tttgataata
      481 gctggatgtt catgttctag taaagcacta gagcttttaa ataaagagcg cgtaagattg
      541 agactaagtt cttttgacaa accttcataa actccagcat tagcaatgct ttctgctata
      601 agtgctaaaa aagcaggagc gcagccgcta atcgccatag ctgcattcat ttgtatttca
      661 ttatctaatt tataagccga gccaaaagtt tttaaaatgt ctaaaatttc attttcgaaa
      721 tgagagtttt taagtatata tggtgtggtt gaagccttat atttagctgc tgtattgggt
      781 attattctaa cataattttg agctttgatg gtttgtagtt tttcaaaatc aacattggct
      841 aaaacagaga ttaagatacg tgcttgtcct tttagcattt gagcaatatt ttctaaagca
      901 taaggtttaa atgctaaaat aacatcttta ccttctatgt taaaatcttt gtaaagtaag
      961 gttttaaagc cttctttggc gagggcttga agtttttcta tacttcttcc tactatacaa
     1021 atttcataat catcttttaa cccataggct aaggctgttg ccatagatcc atttgcaagt
     1081 atatagagca ttatttttta atataattag caatttgatc agcttgaaaa aagtcgggat
     1141 aattaactgt atctagtatc acttgtacca tagtattatt atcaagatta atgactactg
     1201 gagctagaaa attcactgtc gattcttcaa tgctttttgc tatggctact atattaaaaa
     1261 ttttcatatt agattcaggt gttaaagaaa gaagctcttg ataataagtt ggtatatcaa
     1321 attcataatc aggtctaatc aaataaggat taattaaaac aaaagaaaag tctttaccat
     1381 caagactttt aagtcttaca aatacttcat cgatagttga aaattccata tttttggttt
     1441 cttcaaaacc taagataggg catttaacag ctagggtcat gttttctcct caagttataa
     1501 tgtttaatat tttaacataa aataagcaat aatcattcca aaattttaaa ttatttaatt
     1561 aattttatta taattttaga agaacataat tataaaatcg ttaaaatata tatttttgag
     1621 aatataaatc aaggtgaagt atgaaaaaag gtattttttt attggttttt ttaagtgttt
     1681 tttttagtgc gtgtagtacg aaaaatgatg aaggtttata caatcttagt gctagtgagt
     1741 ggtataagca aattattaaa gatttgcagg acaaggattt ggaaaaagct gatgatcatt
     1801 ataatggtat ggcaagtgag catgttgccg atcctttatt agaaactact ttaattattt
     1861 tagcacaagc tcatatggat gaagaagaat ataagttagc tgaattttat ttagatgaat
     1921 ataataaaaa atttggaaat tcacgcaatg ctgattatat tcgttatctt aaaattaaag
     1981 caaaatttga tgcatttgca gtgccaaatc gtaatcaggc tttaatgctt gaaagccaaa
     2041 aagaaataga tacttttttg aaagattatc cttatacaga atatgaacct ttggttcaaa
     2101 caatgcttac aaaatttaat ttagcggttt tttatcttaa tagtactata gaaaatctat
     2161 accagcgcat agggcatgat gaaagtgcac aaatttataa acaaagactt caagaaagtg
     2221 aattttatca gcaaagtatt atcaaacctg agcttccttg gtatagaagt atatttgaaa
     2281 gattttaata aacaaggaaa ataaatgcag attgaagaga tacaaaatta tccagcaaat
     2341 ttaccagtat tggttgaaga tgaattattt ttatatcctt ttatgataac tcctattttt
     2401 attaacgatt catccaatat gaaagcttta gatcttgcga ttaaaaatga tagcatgctt
     2461 tttgttgcac cttcaaagtt ggaaaatgga agaaattttg atgaaattta taattgcgga
     2521 gtgattggga ctatcatgcg aaaagttcct ttgcctgatg gaagagtgaa aatacttttt
     2581 caaggatatg ccaagggtaa aattatagag caaatttcta ataaaccttt agaagccaag
     2641 atagaactta taaaagaaga ctttttagaa ggaactaaaa aagaagcact tcttgaagtt
     2701 ttaaaagaga aagtaaaaaa tttggcaaat attagtcatt atttttctcc agatctttta
     2761 agaacaattg aagaaggttt tgatgcatct aggatttgcg atttgatttt aaatactgtg
     2821 cgtattaaaa aacaagttgc ttatgagttt tttgttttaa cagatcttga gcaaaaatta
     2881 gtaaaattaa tagatttaat tgctcaagaa atagaagcta ataaaattca aaaagaaatt
     2941 aaaaataaag tacattctcg tattgataag gtaaataaag aatatttttt aaaagaacaa
     3001 ttaagacaaa ttcaaaaaga gcttggttct gatacgcaaa aagaagatga ggttagagag
     3061 tatcaaaagc gtctggagtt aaagaagaaa tttatgcacg aagacgctta taaagaaatc
     3121 aaaaaacaaa ttgaaaaatt cgaacgcatt catcaagata attccgaagc atcgatgatt
     3181 caaacttaca tagaaacagc attagatgtt ccttttgaaa aaatttctaa gaaaaaactt
     3241 gatattaagg aagtttcaaa acagcttaac catgatcatt atgcattaaa taaaccaaaa
     3301 gaacgcatag aagaatattt tgcagttagg gaacttttag aaaaaagaaa aatagcagaa
     3361 aaagatggtg ctaaagttat actttgtctt tatgggcctc ctggcgttgg taaaacttca
     3421 ctggcaaatt ctgtttcaaa agctttaaaa agagagctta ttcgtatagc cttaggtgga
     3481 cttgaagatg ttaatgagct gcgtggtcat cgtagaactt atataggcgc tatgcctgga
     3541 cgtattactc aaggactcat agaggcaaaa caaattaatc ctgtaattgt attggatgaa
     3601 attgataaat taaatcgcag ttttagaggc gatccaagtg cggtgctttt agaaatttta
     3661 gatccagagc aaaattctaa atttagggat tattatttaa attttaatat tgatttaagt
     3721 aaagtcattt ttatagcaac ggcaaatgat attagcaata ttcctgcacc tttaagagat
     3781 agaatggaat ttatagaact tagctcttat actccaagtg aaaaatttca tataatgaaa
     3841 aaatatttaa ttccagatga gcttaaaaaa catggcttaa aatccaatga attatctatt
     3901 gatgatgaaa ctatagagct aatcattagc gattatactc gtgaatcagg agttagaaat
     3961 ttgcgtcgca aagttgcaga gttgtgtcgt aagagtgcta aaaaactact tttagaaaat
     4021 attaaaaaag tcattattaa tacaaaaaat ttgaatgaat ttttagataa aaaagttttt
     4081 gaaatagaaa aaaataatgg agaaaatcaa gtaggtcagg tcaatggttt ggcttggaca
     4141 agcgtaggtg gagatgtttt aaaagtagag gctgtaaaaa ttaaaggtaa aggagaatta
     4201 acgctcacag gaagtttggg tgatgtaatg aaagaatcag ctagaattgc ttttagcatg
     4261 ataaaagttt taatcgatga aggaaaaata aaaataccta aaaaaataat tattgatcct
     4321 aaagttaatg tttatgatag ttataatatt catatacatg tgccagatgg agctactcca
     4381 aaagatggcc caagtgcagg tattacgata agcacagcta ttgcttctat ttttagtgat
     4441 aaaaaggtta aagcagatgt tgcaatgacg ggtgaaatag atttaaaagg aaaagtttta
     4501 ccaataggcg gattaaaaga aaaattaatt gcagcttata aagcagatat aaaaacagct
     4561 ttaattccaa gaaaaaatta cgaaagagat ttaaaagata ttcctagtga ggttagagac
     4621 aatatggaaa tcattgctgt tgatactttc agtgatgttt tagaatatac tttggtttaa
     4681 ttttattttg agaataaatg tataagaaag caaacttttt acaagtttgc ttttaaaaga
     4741 ttatagtcct tcaaaaggat tgttgattac ttcttttcta tccactatat aagggataag
     4801 ggctacatgt cttgcgcgtt tgattgcaac ttctaccatt tcttggtatt ttttgcttgt
     4861 gcctgttaaa cggcgtggca tgattttaaa tctttcagat aaagcatgtt ttaacattgc
     4921 tgtatcttta taatcaataa attcaacttt tgcttcagtg tatttgcaat atttgcgaga
     4981 gtattttctt ttttctgcca tagtttatcc tttaaaatgg taaattagta tcatcgctat
     5041 cataagcatc gatatcaatt tcttttaatt tttcttcgtg ttgtgggctt tggtttctct
     5101 gtggagcagg gtttgctttt gctttattaa aattttgatt ttcactcata taaggatcat
     5161 agctttgatt ttcatagttt ccactataat tgttgtttga aaagctatta ttgccaaaat
     5221 ttccgccttg ttgtggagca ttggaattgc caagcatttc catattttca acttgaatgc
     5281 tatgtttaga gcgattttgt ccattttgat cactccattg ttcaaatctc aaacgtcctt
     5341 ctatgagtac ttttgaacct tttgtaaggt attggtttgc aacttctgcg gtgcgaccat
     5401 aaaagcttat atcaataaag caagtttctt ctcttttttc tccatttgcg gtaaatcttc
     5461 ttgttactgc tatagcggaa gctccaatag cactaccgct ttgtgcataa cgcatttcta
     5521 tatcacgtgt aagatttcca accaaaacaa ctttgttaaa catctttttc cttattgaat
     5581 ttcaggagca tctaaaggtt taatttcttt tttagattgc ttaatcccgt ggcttagttt
     5641 ttcccaagct gcaatttctt ttttattttc atattttacg attaaaaatc ttattacttc
     5701 ttcagtgatt cttaacaccc tttcaagctc agcgatcaag tttgtaggag ctttgaaata
     5761 aatcacaaaa taagttcctc tttcgtattt tttgatttta tacgctaatt ttctagtacc
     5821 cattggaaca acagtttcaa tttctgcact atttttggtt aggacttctt taacgaattc
     5881 caacttcgca ttcacttcct cttcagtaag tgttggtttt aagataaata aaacctcata
     5941 atgtttcatc ttttctcctt atggatatta aagcccattt ttatgagcaa ggattttgca
     6001 taaagcaagg ctagattata tcaaaatata cttaattagt cttgaatact taaggtttta
     6061 tctaaatttg ttttgatttc ttcaagcata gcaaaacgtt ttttatacat ggagcgtttt
     6121 tgcgaaggga tttcttctag gtttttttga gagtggtgga gtttatagta tttgtgttta
     6181 ttgattttta ttaattctcc accattttct agccaaattt tttgataatc tacaaaatag
     6241 cctttttctt ttcctttttg agaacggatt tgattttttt catgtacacc taaagtagct
     6301 tgaagtttta aaatttcaca aagcatctta gagcattcta taagtaaagc aacagggcgc
     6361 aaaccatgac attttttagt taaaatttta ttaatttcta aaatattaaa atctttgtat
     6421 ttatgtcctt gtatacaaga aagtagaaga ttgttttcta aagtaaagca aaaattacat
     6481 tgtaagattg tgtatttttt aaattttaaa gaaaaagccc aaaaaccttc ttcgcaaaca
     6541 ttatagttat atcctaaaaa aagctcaaaa tcttcatcaa aagaaaaaat tatttgttcc
     6601 tcgggaagaa atttaaaaca agcgagtccc ttatcaacat cataaataag tgttttaaca
     6661 cgttcatttg ctttaaaact tttatcgcaa aatcttcttg tagcattgta acaagcatag
     6721 ggtctttgag agaaaaagtc ttttaaatgt ttattttttt ctttattaag cgttttttct
     6781 agaagtctta cttgaggaaa atataaaatt tttcttgctt gaaaacgcaa atagcgccaa
     6841 aagattatac tttttcttct atcagtaaaa tttggaatag ggtaggaaaa ttttttattc
     6901 acctataatc cttgatatat cattataagt tgcaaagagc attaaactta aaagtattgc
     6961 catgcctgta tagcttaaat attcaaaagt acgctgtgga actttgcgtc taaaaatcat
     7021 ttcataaaga ttaaaaagta tatgtcctcc atcaagcata ggaataggta aaagatttaa
     7081 aatgcctaaa tttatagaaa ttaaagcagt gataaataaa agcaaagtaa agctattttg
     7141 tgcagccttt gaggtaattt cagtcatggt gataataccg cctaaatttt ttgcttcaac
     7201 ttcaccactt atgagtttta caataccctt gatgatgagt gtagaagctt gaaaactttc
     7261 ttgtgcggca tatttaaaac tttctaaacc ttggtgtttt acaagagtgc ttgtcccatt
     7321 tggactaact ccaagttgag gtttttcaac gatttgtcca aagtcattgt atccttgtcc
     7381 tatttttgga gttaaaataa attctaaatt ttttccttct ctattgatta atattttcaa
     7441 aggatctaaa cttaaatgct ttgaaatttc atcaaaggtt tgaattctta taccgttaat
     7501 ttctaagata gtatcatttt tttgaagtcc tatttcttgt gcagcagagt ttggcgctat
     7561 gtttcctatt tgcggagcaa gtttgtttag acctaaattt cctatgataa tataaagaaa
     7621 aaaagctaaa attagattaa aaaatggtcc agcaaaaaga atataaatct tttttaaagg
     7681 acttaaaatg ctatagctat ctttgtctag attttcaaaa ccaggacgca tatcatcttg
     7741 tcctttaagt ttaacatatc ctccaagtgg taaagtgctt aagcgatagt ttgtgccttt
     7801 aaattcacgc tctataagac tttttccaaa tcctatacta aaaacttcaa cttttacacc
     7861 caaagatctt gcagccaaaa aatgtcctaa ttcgtgaaag aaaattaaaa atgagatgac
     7921 taaaacagtt gctaaaaatt caatagaata aaatttaatt cccaaaatca aaataacaat
     7981 taaaaataat aaagatctca tttttctcct tttttttgag cttttatata agtatagatg
     8041 tattcaaatc cagaataaag agttaaaatc aaagctatgt aaagtagaat ttcaccgcct
     8101 atccactcca tgattaaaaa tcctatcgca gtcatttgaa aagcggtttt aagcttgcct
     8161 gcaaaagaag cattgacatt taaattttca ctgatcatta caactctaaa acccgtgata
     8221 aaaaattccc ttactagtat aatataaatt acccattcat tagcttttcc tgtaagtaaa
     8281 agccctaaaa aagctgctaa aacaagcatt ttatcggcta atggatctaa gattccaccc
     8341 agttttgtag tttgtttcca agttcttgcg atgtatccat caaaaaaatc acttaaagct
     8401 gctaatgaaa aagttaaagc agcaaaatag ttaatccaac tttgatgaat attttcaaaa
     8461 tgatgaatta ataaaaaaaa tagcaaaggc gctaaaacca ttctaaaaat cgccaagata
     8521 ttgggtaaat tcataacaag ccttgtgaaa ttaaatgtaa aattataatc aaaattgtat
     8581 aaaatttaag caaagactta gtaaaaatac aaaaaagaat cagtttattt ttatttaaat
     8641 tttgctttta agcaaaattt aaataaattt tacaacttca tcaaaactaa aacgattttt
     8701 ttgaggattt ttttcatcgt tgcaatatcc taaagccacc accaaacttg atctttcttt
     8761 ttgaatatca agtgataaat aagaattaag cttttgttta tcaaaaccac ctatagtgca
     8821 gcttgctata tttaaagcat tagcactgta aagtatgcta gctagagcta tatgagcttg
     8881 ttctcttgca taagatattt tttcttcttg atttagagat tttaaaaaag gcatataagc
     8941 atctaagcgt ttttgaattt ctgtttcact catatctctt tttctaagtt tttcttcaaa
     9001 ataatccaaa aaatcaagtc ttgaaatgat gataattaac gcagcgcaat cttttacatg
     9061 tttttgctgg ttgcaaattt tagaaagttc ttcttttctt ttctcatctt gcactactat
     9121 aaatttccaa ggttccagtc ctaaggagct tgggcttaat cttgctattt ctaaaataga
     9181 atttaaatcc tcttttttga gtttttcatt tttaaaattt ctacaagaat atcttgtgct
     9241 aaaaatttca agttcttttt tcattatttt tccttgtaaa attcgacgac ttcattaaaa
     9301 tttaagcgtt gagtagaata ttttggttta tgggctttat atcctaagga taaaattaca
     9361 gcagtttcaa aaggataagt taaattaaga aaatcatcaa ctttagcttt ttcaaagcca
     9421 cctatcatac aagaatcaat acctaagctc attgcagcta gtgacatttg catcatagca
     9481 agatagcatt gaagttgtgc ataatgatag agttcattat cattcattgc attggtttta
     9541 tgagtataaa tttctaaaat tttttgaaaa ttttcttcgc tagaacttga gaaacgacgt
     9601 acttgttttt gtgcaaattc atctttgctt tgaagatctt ttcttgctag aaaaataata
     9661 ttatgactcg cacttgctac gttttgttga ttgtaacata gagttgagag cttaagatta
     9721 tgttcttttt gttctaatac tacaaatttc caaggctcaa atccatgtga gcttggggct
     9781 aagactccgc tttctaagat aaaatgcaaa tccttttcat tgattttttt atcattaaaa
     9841 agtttataag ctctgcgttt tgaaattagt tctttaaaat tcattttatt ccttaaaatc
     9901 aaaaataata atattaatta taaaatgcaa agcttaatca aaaaatatta tagtttgata
     9961 tttttcttaa aaacaaaatc agatttttca aaacccattt tttggatata aaattcatga
    10021 tcttgtgttc taaaaaagct tgagcttagt tctaattttt catttccttg atcttttgtc
    10081 caaatttgga ttttttcaaa aaagcttgac ctataccctt tcctcttaaa gtttcatcta
    10141 cgacaaaatc acaaatataa agacaatgat tatgataaag tacattaaag ggcatgactc
    10201 cacaagctgc tttgtagctt ccctcatttt cataggcaaa aagtttataa tgttgagttt
    10261 gtgtagcaag ttggattttg tctaaaaaat ctttcaaaga taggttattt cttaattgtt
    10321 ttatcaaggg ataaattttt tccaagtctt cttttagctt aatttctttc atttttaaat
    10381 cccttaaatt tcaaaaattt caggttttaa ttttaaaagt aagcaaaaag ttgccaaaac
    10441 agcttgttct tgcataaatt cacgatctcc atctaaataa agcgtttctt ggataaaagt
    10501 tccatctcta aacattgcac ctatataaat agtgcctgaa tttatttttc cctcatcttt
    10561 ttcgccaact actccgctaa tagctaaggc aaaatcagga ttagctgttt taaaaatacc
    10621 ttttagcata aaataaacac aacgttcact gtattcgcca ttattttcta agacgctttc
    10681 gctaattcca agccattcgt gtttgatgcg gttggaataa cttacaatag aaccttcaaa
    10741 aatttcactt acacctgaaa ttttggttaa ggtgcttgca caaagtccgc ctgtgcaact
    10801 ttcagcaaaa gaaattttta attttttttc taaaagttta gagcttataa aatgtatagg
    10861 atctttacct aaaaacacct tttgtccaaa aagatttttt acgctattta aaaaaccatc
    10921 aagttttcca aaattagcgc aagtggcctt aataagcaca agattatcta aaagcttggt
    10981 tgattttata cttatctcat aagattttgt tagggtttgc agtagcaata tagcgctttc
    11041 atcatccata ccaaaaatgc aaaaatatgc aaaatttaat tttatatgcc caagaagatt
    11101 gggtaatttt tcgcttggat ttattttaac gacattgatt tttgaatttg aaaaattaca
    11161 cacaaagcta tttttactaa attctgcttt atctggaacc aaggtatcat cttttaagat
    11221 aagattatca tcatttaaag ttgctaaaat tttagcaaca gtcgcataat gcaaagagct
    11281 tgtaaataaa gtgataaaat catactgatt taagaggttt tcaagcaaaa atggtaaatc
    11341 tttatcggtt ttattttgta tgcgaatttc gttaatttct ttaaattttt cttcataagt
    11401 tctataaata taatttttga atttttcgtt tatagtaagc tcatctccta taagataaag
    11461 caaatgtttc ataaattttc ctttttttct tataattata gccaaaaaca aagtagaaat
    11521 taaagctaat ttgagtagaa tttaagatta ttaaaaatta ggtggaaaaa atggactaca
    11581 aagaaactct acttttgccc agcactactt ttgctatgcg ggcgaattta gcggaacttg
    11641 aaccgcaaag atttaaaaaa tggtttgagc aaaattatgc ttatgaaaaa atgaaagaaa
    11701 atcgcaaaaa tgcgaaaaaa agttttactt tacacgatgg ccccccttat gctaacggac
    11761 atatccatat aggacatgct ttaaataaaa ttttaaaaga aactattatc aaaacacatt
    11821 attttaaagg tgagagtgtg cgttttactc cagggtggga ttgtcatggt ttacctatag
    11881 aacaacaagt agaagtgaag cttggagaaa agaaaaaaag cttaagtaaa aaagaaattc
    11941 gtgagttttg cagacaacat gcgagtgaat ttgtagatat tcaaagagaa gaatttaaaa
    12001 atttaggcat tattgcggat tgggataagc cttatttgac tatgaaattt gagtttgaag
    12061 cagcgattta tagaacttta tgtgagattg ctaagaaagg cttactttgt gagcgttcta
    12121 aacctgtttt ttggagttgg gcggcaaagt cagctttagc agaagctgag gtagaatatc
    12181 aagataaaga agattattct atctttgtgg cttttgattt ggatgtaaaa gcttgtgaaa
    12241 aattaggcgt ttcaaaagca agcgcagtga tatggacaac tacgccttgg actttagtgg
    12301 ctaatcaagc tatagcttta aatcctaatg aaaattatgt gatcactaaa gagggtttgg
    12361 tttttgcaag tgctttactt aacagcatgg tagaaaaagg acttacaagt ggagaaattc
    12421 aaaaagaact aaacgcaaaa gaatttgaaa aacttgaagc tatcaatcct ttaaatggaa
    12481 gaaaatctgt tttaatcatg ggtgagtatg tattgatgga tggtggaagt ggacttgtgc
    12541 atactgcacc aggacatggc gaagatgatt actatgcttg tttgaaatac ggtattgaag
    12601 ttttaatgcc tgttgatgat agtggatgtt atgatgaaac tttaagagct aaagggcttt
    12661 tgccttctca tttgcttgaa gagtttatag gtcttcatat ttttaaggcc aatgaaaaaa
    12721 ttttagaact tttaggcgaa aaacttttac attcttctaa atttatacac tcttatccat
    12781 tttgttggag aacgcataag cctgtgattt atagagctac taaacaatgg tttattttaa
    12841 tggatgaacc aaaacttcaa ggaaaaacct taagagagtg tgcaaaagaa caacttttaa
    12901 aaacaacctt ttatccgcaa agtggggtaa aaagaatagg ttctatggtg gaaaatcgcc
    12961 cagattggtg tatttcaaga caaagagact ggggaacgcc tatagccttt tttagagata
    13021 aaaacactaa agaagtgatt tttgatgatg agctttttga ctttgtagca gctatttttg
    13081 aaaaacacgg tgctgatgcg tggtgggagt ttgaaatcaa agatttaatt cctacaaatt
    13141 caaaatacaa cgctgaaaat ttagaaaaag tatatgatat tttagatgtt tggtttgata
    13201 gtggaagtac ttttaatgcg gttttaaata gcggacttta tgacgcagga gaaaaaagag
    13261 caagtatgta tttagaagga agcgatcagc atcgcggttg gtttcaaagt tctttgcttg
    13321 taggtacagc gatcaatgaa aatgcacctt atgaaagcat tttaactcat ggttttacca
    13381 ctgatgaaaa agggcaaaaa atgtctaaat ctaaaggcaa tgtgattgct cctgaatacg
    13441 tagcaaaaac ctatggagtt gaaattttaa gactttggat acttttaagt gattattcaa
    13501 gtgatttaaa aatttcagac aatatcttaa aacaagtggg tgaacaatat cgcaaaataa
    13561 gaaacactat aagattttta cttgccaata caaatgactt aaaagattta gaagttaaag
    13621 aatttagctt tattgataaa tggatattaa gccgtgcaac taaagttttt aaagcaagca
    13681 aagaggcatt ttttgcttat gaatttgcta aaggttttag tttgctttta aatttcttaa
    13741 gtgcggattt aagtgggatt tatcttgata tcagcaaaga tagactttat tgtgatagcg
    13801 aaaatgctca aagaagaaaa tccgctcaag tggctatggc tttgatagca aaagagcttt
    13861 taaatttact tgctccaaat ttaagctata gtgtagatga ggctttagaa catgctaatg
    13921 ttttaatcaa aggcgatgca aaagatgtat ttgatctaag tttaactcag gattttgatt
    13981 atgattttgg tatagatgat acatttttaa tgagtgctag agagaaattt tttgaacaga
    14041 ttgatatact taaaaaagat aaaatcatta aatctacttt ggaattaaat ttaaacatca
    14101 gttttaataa attcccaaat gaggaattag ccgattggtt tatggtaagt caaatcagca
    14161 atgaaaatga agaaattttg gctgaatttg aagtagagaa tgagaaattt aaaatcacca
    14221 aagcttcact ttgtaaatgc ccaagatgtt ggaaacttca aagtaaagat gaagaaacac
    14281 cttgtttaag atgtgaagaa gttttaaaag ggattcaatg ctagaaaatc ctattccaaa
    14341 tagcattatc atcacaacta tagcggtggt tttggctttt agtgctttag cagtattttt
    14401 gatcaaaaaa acaaaggaaa ataaatgata actttaaaag aagctttaaa atactccaaa
    14461 gaagaacttg aaaatttaaa aaaagaactc aatgaaaaag caaaaaaaga aaaaaaaata
    14521 ggtgcttata tcgaacaatt tttagataaa gacttaagtg tttcaggtga aggtgtgcct
    14581 gtagctataa aagataatat cagcgtaaag ggctgggagc ttactagtgc gagtaagatt
    14641 ttacaaggtt atatcgctcc ttatgatgca agtgtgattg ttaatttaaa agctaatggt
    14701 ttttctcctt ttgggcgttg caatatggat gaatttgcta tgggaagttc aacagcgagt
    14761 tcttattatg gcaaaacttt aaatccttta aattttgagc gtgtgccagg tggttcaagt
    14821 ggtggaagtg ctgctgcggt agcgggtggc ttggctttgg caagtttggg ttctgataca
    14881 ggaggatctg tacgtcagcc tgcagctttt tgtggttgcg taggatttaa accgagctat
    14941 ggaagagtga gtcgctatgg cttagcttct tattcttcaa gtttggatca aattggggtt
    15001 ttaacgcaaa atgtagaaga tgcggcaatt ttatatgatg cgatcgcagg atatgataaa
    15061 atggatagca cgagtgcaaa tatcgagttt atcaaaaccg ctccaaattt aaatgcaaat
    15121 aaaaaattaa aaattgcagt gattgaaaat tatgtcaatg atgcagatag tgaagtaaaa
    15181 aacgcacttt taaaaaccat agatatgtta aaagctaatg gacatgagat tgtatataaa
    15241 aatttgcttg attctaagtt tgatatcgca gcgtattata tcatcgcaac agctgaagca
    15301 agtgcaaatt taagtcgtta tgatggggtg cgttatggca agcgttctga aaatatccaa
    15361 aatttaaaag aaatgtatgt aaatacacgc agcgaaggtt ttggagaaga agtaaaaaga
    15421 agaattttgt taggaacttt tgttttaagc agtggatatt atgatgcgta ttatattaaa
    15481 gcacaaaaag ctagagcttt tattaaggca aaatatgaag aaattttgca agattgtgat
    15541 cttattttta tgcctgtaac gcctacaacg gcttttaaat ttgatactca aaaaagccct
    15601 atgcaaactt atttagaaga tgtttatact atctctgtaa atttagcagg acttggaggc
    15661 attagtgtgc ctgttgcaaa agataaagaa gggcttaata tatcagcaca actgatttgc
    15721 aaagcttatg atgaacaaac cttgttagat ggggctttaa gtttagaaca aatgattaaa
    15781 cattaaggat gaaagatgaa aattgtaaaa agagctttaa cttttgaaga tgtattattg
    15841 cgtcctgggt attctgaagt tttacctaag gaagtaaaaa ttcacactaa attaacaaaa
    15901 aatatcactt taaatatgcc tttaatctct gcggctatgg atacagttac tgaacacagg
    15961 gctgctatta tgatggcaag acttggaggg cttggagtga ttcataaaaa catggatata
    16021 gcctcacagg ttagagaagt aaaaagagtg aaaaaaagcg aaagcggggt gattatcgat
    16081 cctatttttg taagtcctaa ggcaagtgtt gcggaagctt tagaaattat ggcagagtat
    16141 agaatttcag gtgttcctgt agtagatgaa gataagaaac taataggcat acttaccaat
    16201 cgtgatttaa gatttgagag tgatttttca aatttggttg aaaatgttat gactaaaatg
    16261 cctttaatca ctgctccaaa gggttgtact ttagatgatg cggaaaaaat tttcagcacc
    16321 aacaaagtag aaaaacttcc tatagttgat gaacaaggac gcttggaagg acttatcact
    16381 ataaaagatc ttaaaaaacg caaagaatat cctaatgcca ataaagataa ttttggaaga
    16441 ttacgcgtgg gtgcggctat aggagtaggg caaatggatc gtgtggatgc tttagttgaa
    16501 gctggcgttg atgttgttgt gcttgattct gcgcatggac attctaaggg tattattgat
    16561 acgataaaag cgattaaaac taaatatcca aatttagatc ttatcgcagg aaatatcgcc
    16621 actgcagctg cagcaaaagc actttgcgaa gcaggggtag atgcggttaa agtaggtatt
    16681 gggccaggaa gtatttgtac tacgcgtatt gtttcaggtg tgggtgtgcc tcaaatttcg
    16741 gccattgatg agtgcgtgga agaagcaaat aaatttggcg ttcctgtgat agctgatggc
    16801 gggattaaat attcaggtga tatcgcaaaa gctttagctg taggtgcgag ttctgttatg
    16861 ataggatcgc ttttagctgg aacggatgag agtccaggag agctttttac ttatcaagga
    16921 agacaatata agtcttatcg tggtatgggc tcacttgggg ctatgcaaaa gggaagttcg
    16981 gatagatatt ttcagcaagg tactgctcaa gataaactcg ttcctgaagg tatagaaggg
    17041 cgtgttcctt atgtgggaag tataagaagc gtggtgcatc aacttttagg aggtttgcgt
    17101 tcttctatgg gttatgttgg ggctaaagat atagaagatt ttcaaaaaag agccgaattt
    17161 gttgaaatta ccactgcagg gcttaaagaa agtcacgtgc atgatgttac tatcactcat
    17221 gaagcaccaa actacaaggt taatcatcaa tgagttttga agaaaattta aaacacgcta
    17281 atgaatcttt ggaaaaatta aataatcaag agcttgcctt agatgaaagt gtaaaaattt
    17341 ataaagaagg tttagagagt atcaaaaaag caagacttga gcttgaaaaa gcaaaattag
    17401 aagtggagca aatcgatgag taaaatagca gctttacagt ttccaacttt agctttaagt
    17461 gaatcaaggc ttgattatta tcttaaagct tcaaaagaca atggagcaaa tttagtagtt
    17521 ttgggagaat atgtgatcaa cagttttttt acagaacttt tgcatatgcc aaaaaatatg
    17581 ataaaagaac aaagcgaagc taaaaaagaa agcttgatta aacttgctaa aaaatacgaa
    17641 ttagaaatca tcgctcctta tgttagtgtt gaagctaaaa gttataaaaa actttgctta
    17701 aaagttactc caaatggtgt taaaagttat gaacagcaaa ttttaatgcc ttatgaacat
    17761 tggaatgaag aaaaattttt cagcaacaaa actccatcag aattaaaaat ttttactttt
    17821 aattatgaaa aaataaaatg tgctttgctt tttggttttg agacacattt tgatattttt
    17881 tggcaacaga ttatggcgaa aaaaattgat ttggttatcg ttcctagtgc ttgtaccttt
    17941 gaaagtaaac aaagatggga agaactttta aaaacaagag cgtttttaaa ttctacaagc
    18001 attttaagag tcaatcgcat aggtaaaaca aaagatgaat ggaattttta cggtgatact
    18061 ttgtttatca atgcttttgg tgagatagaa agtaaattag gttctgaaga agaaatgctt
    18121 atcatagagc ctaaaaaaag tgatgaagca agaaaacttt ggggttttga taaaattctt
    18181 aagaattttt aaagaaggtg aatgtgagaa aaattttact tcaaattctt atttttagtg
    18241 tattatttat agtagctttt accattaatc gtattttaat gcaaaattct tttatccctg
    18301 ctggtttaat tagtgataaa aatgaaatct ttttaatgta tcttttaggt gtttttcatg
    18361 atataagatt tttaagcgca gcgtttttac cattcttgct ttgtggtttt ttaagtttaa
    18421 ttttttctaa tataaaaata aataataagt tagtaatata tagtaaaaat ttttatttca
    18481 ttttttcaag cgtttatata attgttcttt cttgtctttg tataggattt tcttatgcaa
    18541 aatactatta ttacgaaatt tacaagacta aatttgatat ttttatgttt actctaaaag
    18601 atgataatac aaaa
//
LOCUS       DARBBO010000024        18541 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.024, whole genome shotgun sequence.
ACCESSION   DARBBO010000024 DARBBO010000000
VERSION     DARBBO010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18541
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.024"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            76..1142
                     /locus_tag="SB854_000670"
                     /pseudo
     CDS             76..1142
                     /locus_tag="SB854_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
     gene            1139..2011
                     /locus_tag="SB854_000671"
     CDS             1139..2011
                     /locus_tag="SB854_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HEG0956700.1"
                     /translation="MKEYDKLSIRLVQILSKFNNGESLSAQELAQEFNVDTRTIQRDL
                     NERLAFMPIKKENGRYVLESFALGKLSFKDIQNFATLSGIAELYPKLDQGFIVDLLSH
                     RVNKVLMVKNEGFQKVDYELFKDLSVAILKHNVLNFFYKDKERQIKPYKLVNYKGIWY
                     LLGDENDKLKHFNLDKISKLHTKNENFIPDEKLEEQIQNDPNIWLGESKEVILKLDKN
                     AKEYFFRKEILSNYQIIDKDETSYTLSTQVSYEDEILHLVKQWIPYIKILAPIELKIR
                     LEDILKSYLNNLSK"
     gene            complement(2033..2108)
                     /locus_tag="SB854_000672"
     tRNA            complement(2033..2108)
                     /locus_tag="SB854_000672"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2073..2075),aa:Met,seq:cat)
     gene            complement(2142..2216)
                     /locus_tag="SB854_000673"
     tRNA            complement(2142..2216)
                     /locus_tag="SB854_000673"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2182..2184),aa:Gln,seq:ttg)
     gene            2309..3328
                     /locus_tag="SB854_000674"
     CDS             2309..3328
                     /locus_tag="SB854_000674"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HEG0956701.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKHDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTTQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            3340..3783
                     /locus_tag="SB854_000675"
     CDS             3340..3783
                     /locus_tag="SB854_000675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEG0956702.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLVMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            3801..5501
                     /locus_tag="SB854_000676"
     CDS             3801..5501
                     /locus_tag="SB854_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEG0956703.1"
                     /translation="MKELSGSAMICEALKEENVKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYSKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELIKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENFNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKAINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISSKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            5498..5962
                     /gene="ilvN"
                     /locus_tag="SB854_000677"
     CDS             5498..5962
                     /gene="ilvN"
                     /locus_tag="SB854_000677"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEG0956704.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            5959..6915
                     /gene="lpxD"
                     /locus_tag="SB854_000678"
     CDS             5959..6915
                     /gene="lpxD"
                     /locus_tag="SB854_000678"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HEG0956705.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCEGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVILEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAMKFKKD"
     gene            complement(6902..8587)
                     /locus_tag="SB854_000679"
     CDS             complement(6902..8587)
                     /locus_tag="SB854_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002905709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HEG0956706.1"
                     /translation="MGLQKGLKDGIEKWGGGLEFHNLALGGCDGLQKLYELTHPKNQE
                     LFKNAEAILIETNINEYDMFARSGLCFQILARNFELLCKALANLNTKVIFLILPLEPS
                     ENTAKHIKIIDNFNREKIKQYNFNCIDMQRYYNEKGLNPFFVTTDCFHQLSSIMRITG
                     EKIIANLHIFKKHLQTHFKMPHFLVKSPKELFNQNLSCKELKNSLLNEQIYKLDEKNV
                     LKFQNSYSGYGILGIYICNFFEVKPYNIASFILKNTKQKIIKGIASNFYHLHTLEEFF
                     IIDEESFLYFNKTNEALSEGSIWLHKNVEILNNISHIGLAHFFLVKPDENFYEKNIDL
                     QSLETKENIDITYDFTYILPPFELYKELIEEYCQRMDSVKQKPLQEQITHLHTKINTL
                     NKQNETLQNTLNTHHFKKEKLELENLEQELISKKLSNEILAKKLGKKLDFFMPKITLI
                     EANSAKARMHNHLAYKLGSCMIKNSKSLLGYIKMPFLLIALTIAHKEYPKIQLPKLED
                     YPDYKEALKEKQSLTYKLGLAFMQANKAWYKGGYIQFYFEVRRLKKEFKASPS"
     gene            complement(8774..9802)
                     /gene="queA"
                     /locus_tag="SB854_000680"
     CDS             complement(8774..9802)
                     /gene="queA"
                     /locus_tag="SB854_000680"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEG0956707.1"
                     /translation="MNKDLLLSSYNYTLANELIANYPTNPKEDARLLVFDRKNKEIFH
                     TTFKNLQDFLPNCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHNPLFLAQIK
                     GRVKKDEILYFKEDLKARVVELLNDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMLENLRKKHEIYHLTLHVGAG
                     TFKSVECENIQEHKMHSEFFNIPKRACEIIDSKQAILGVGTTVTRTIEYYARTKTKNG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYELAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(9795..10532)
                     /gene="tatC"
                     /locus_tag="SB854_000681"
     CDS             complement(9795..10532)
                     /gene="tatC"
                     /locus_tag="SB854_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEG0956708.1"
                     /translation="MFEELKPHLIELRKRLFISVACIVVMFIVCFSLRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            complement(10525..10941)
                     /gene="tatB"
                     /locus_tag="SB854_000682"
     CDS             complement(10525..10941)
                     /gene="tatB"
                     /locus_tag="SB854_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatB"
                     /protein_id="HEG0956709.1"
                     /translation="MSFGEIIVILVIAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDKVKNNLSGQNLNTEEKPNLSKLETQDKNGKINV"
     gene            complement(10999..12066)
                     /locus_tag="SB854_000683"
     CDS             complement(10999..12066)
                     /locus_tag="SB854_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG0956710.1"
                     /translation="MHFYIHIPFCESKCNYCAFTSLKKNDYEKAYFKALKEDIVFQLK
                     QFNIQSNQIKTLFIGGGTPSCVNAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWL
                     KNMKNLGVNRISFGVQSFHPKKLHFLGRIHNQEMIIKTLENANKVGFKNINLDLIYDT
                     KLDNKKMLEFELLHLKQIKDLITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQ
                     LLELDFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKN
                     YIENPTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKNKINILLKEKKLFYK
                     NKRYFNPNFLISDELALYLSS"
     gene            12167..12637
                     /locus_tag="SB854_000684"
     CDS             12167..12637
                     /locus_tag="SB854_000684"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HEG0956711.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIARRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGVTININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEKKGYI"
     gene            12639..13841
                     /locus_tag="SB854_000685"
     CDS             12639..13841
                     /locus_tag="SB854_000685"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEG0956712.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGCPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNIEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            13842..14378
                     /locus_tag="SB854_000686"
     CDS             13842..14378
                     /locus_tag="SB854_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HEG0956713.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKATRPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSKVQLG"
     gene            14384..14983
                     /locus_tag="SB854_000687"
     CDS             14384..14983
                     /locus_tag="SB854_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEG0956714.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFIPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
     gene            14985..16127
                     /gene="folP"
                     /locus_tag="SB854_000688"
     CDS             14985..16127
                     /gene="folP"
                     /locus_tag="SB854_000688"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEG0956715.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNALLMASKEQIQKLVVKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYGAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            16128..18071
                     /gene="ligA"
                     /locus_tag="SB854_000689"
     CDS             16128..18071
                     /gene="ligA"
                     /locus_tag="SB854_000689"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEG0956716.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDALIRELRVFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEAGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFVRLCANLDEVLKAYDELLALREKKPMMMDGMVV
                     RVDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKERREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFNDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWYKQSFEAYANLEGFGEQMALSLCEFTRVNRTRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKLGGKVSGSVSKKTDYVLFGEEAGSK
                     LSKAKELEVKCIDESAFNELVKE"
     gene            18052..>18541
                     /locus_tag="SB854_000690"
     CDS             18052..>18541
                     /locus_tag="SB854_000690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956717.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRSAFSLFFLISIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSLFYRVSMGDFYLYIFSFFLAIFGLVSLFLNFLNLEKID
                     FVFIFIILPLLMIFLKKELHLQFVDNAYNDFRIVVIASFFTALFYAFYGLFFTYNELL
                     NLE"
BASE COUNT         6533 a         2362 c         3365 g         6281 t
ORIGIN      
        1 cacttgtaaa attttattaa ttgaagctca taataaatct aagcttttta aagaaatcct
       61 aaaataaggc aaagcatgaa ccacctttta atcctttata atccctacta tcaagaagat
      121 gtcatcaagc aacatttaag cattttacaa gaaaaatccc aagttgcctt tggcaaaatc
      181 aaatcaaaac tcaacgatca agaaaagcaa agttccttag aagaaattta ccaaagtaca
      241 aatgaagaaa atttcttgca actcttttta agcgattatg ctaatttatt tgtcgctaag
      301 gtggtaaaaa tttctaaaaa tgttgatgaa agtttgattc ctagttatta taaagaaaaa
      361 aatttagaag tggaagactt ttttattatt agtgatttaa gagaattggt cagggaagat
      421 tttagtcgtt taagagataa atttttagcc aatttcatca caccaaacga tcacacctat
      481 gctatctatg gcaataatta cacctatcct ttgcctgtga gattaaaaga agagtgttct
      541 tatttttagg agatgaaaag cattatctaa gtgtgtataa aagcaaagaa tacctagcca
      601 tgcaagaaaa tttcatacgc tttgtttttg gcaaaaggat tttttatctc ttacactctg
      661 atagcataag caatatcatt catgcagaat tagagctttt gcaaagcgaa aacgatcttt
      721 taaatgattt tacaagtatt atagtcaaat actctaaaac cttagaatat gaaatttacg
      781 cttttgccaa aaaagttctt ttaaaagctt gtatgaaaga tcctagcctt tatgatttag
      841 cttataatgt ccaaggcaaa tcttttatac ttaaagattt ttttacccaa aaacccaatc
      901 ttggaagtat taaatttcta ctcagacatg aaaatatcca atgtcattta ggaaaaagtt
      961 taactcaatt tatcaattat cctttttcaa aaagtcttac tatcattcaa gaaatccgta
     1021 atgaagccgt tcatgcgaaa gccccaagtt taaatgaagt caaaaaactt agaaatgaaa
     1081 ttttaggcat agaaggcgta agtttgttaa aaagcatttt aactcacaag gaaatttcat
     1141 gaaagaatac gacaaattaa gtatacgctt ggtgcagatt ttatcaaaat ttaacaatgg
     1201 agaaagtcta agcgcccaag agcttgcaca agagtttaat gtcgatacaa gaaccataca
     1261 aagggatctt aacgaaagac ttgcttttat gcctattaaa aaagaaaatg gaagatatgt
     1321 tttagaaagc tttgctttgg gaaaattaag ctttaaagat atacaaaatt tcgccacctt
     1381 aagtggcatt gctgagcttt atccaaaact cgatcaaggc tttatagttg atcttttaag
     1441 ccatagggta aataaagttt tgatggtaaa aaatgaaggt tttcaaaagg tggattatga
     1501 gctttttaaa gatcttagtg tggctatact caaacacaat gtattaaatt ttttctataa
     1561 ggacaaagaa cgccaaatca aaccttacaa actcgtaaat tacaagggaa tttggtatct
     1621 tttaggagat gaaaacgata aattaaaaca ttttaattta gataaaattt caaaacttca
     1681 cactaaaaat gaaaatttta tccccgatga aaaacttgag gaacaaatcc aaaatgatcc
     1741 taatatctgg cttggagaaa gcaaagaagt gattttaaag cttgataaaa atgctaagga
     1801 atattttttt agaaaagaaa tactaagcaa ttatcaaatc attgataaag atgaaacaag
     1861 ctatacttta agcactcaag tttcctatga agatgaaatt ttacatttgg ttaaacagtg
     1921 gattccttat ataaaaattc tagctcctat agaactgaaa atacggctag aagatatttt
     1981 aaaaagttat ttaaacaatc tatctaaata aaatttattt taaatcctta actggttgcg
     2041 aaggggagat ttgaactccc gaccttcggg ttatgagccc gacgagctaa ccactgctct
     2101 acttcgcggc atataagatc tttgaaatat aaaataagaa gtggatgggg taaagggatt
     2161 cgaacccctg aatgacagga ccaaaacctg ttgccttacc gcttggcgat accccaataa
     2221 atatttttta aaagtgtgat tataatgaat tttaatttat ttgtcaagca atttaagtta
     2281 taattttaaa aattttaagg aaataaaaat gaaatttgtt agcgtagaac aagcgattaa
     2341 ggatttacaa gcaggaaaaa tgcttgttat ggtagatgca gaagatagag aaaatgaagg
     2401 cgatttaatc tttcctgcgc aatttagcac tcaagaaaaa gtaaatttca tgataaaaga
     2461 agctcgtggt gtggtttgtg tagccttaga tgaaactttg gcaaaaaaat ttgaacttcc
     2521 tttaatggtg cctaaaaata cttcaaacca cgaaactgct tttactataa ccgtagatgc
     2581 aaaagatgct acaacgggag ttagcgccta tgaaagaaat atgactatac aaatttttgc
     2641 cgatgataat gctaaagcga gtgattttgt aagaccagga catatcaatc ctttaatcgc
     2701 aaaaaaaggt ggggttttag aacgcacagg tcatacagaa ggcacggttg atctttgtaa
     2761 attagcagga ttaaaaggtg cttgtgtgat ttgtgaaatt gtaaaagata atggagatat
     2821 ggcaagaaga gaagatctag aaattttttg ccaaaaacat gatttaaata tgatagccgt
     2881 aagcgatctt atagaatatc gcctaaaaca tgaaagcctt attaagcttg aagaaaaaag
     2941 tcaaagtgtt ttagcaggct ttaaagcaga aaaatttatc tttagtgatc ataatcaaac
     3001 ccaacacata gctttttgct ttaaagatat caaaaaatgt gaaaatgtta aatttcatat
     3061 cagtggtagt gattttgagc ttttaacttc agataaattt tcaaaacttt tagagcaaat
     3121 caaatttctt agtgaaaatg gtggcgttat agttttcatg caaggagaaa aatccagtac
     3181 tactcaatac aaaaactatg gtataggagc acagatttta agatattttg gtatagaaga
     3241 aattaaactt ttatctcaaa gttgtgataa agactatata ggtttagaag gttttggttt
     3301 aaatcttaaa gcttgtaatt ttaactaaaa aggaaaaaaa tgactttaaa agaacaaatt
     3361 ttaaacgata tcaaagaggc aatgaaacaa aaagatgatt ttaaaagaga tagtttaaga
     3421 actctaaatg cagcttttaa gcaaatagaa gtggatgaaa gaatagagtt ggataatgaa
     3481 agaatttata aaatcattgc aagtgaaatc aaaaaacgca aagacgcaat cgaactttat
     3541 cttaaggcaa atcgtgaaga tttagcacaa aaagaacaaa atgaaataag tctttttgaa
     3601 atttatctgc ctaaacaact aagtgatgag gagttaactt tagccttaaa acaacttata
     3661 gaagaattgg gcgtaagttc actaaaagaa caaggtttgg taatgaaaga agctaaaata
     3721 aaattaggtg cgagtgttga tggcaaaaga cttaatttag cacttaaaga gcttttacaa
     3781 taattttttg gagtgttatt atgaaagagt taagcggttc ggcaatgatt tgcgaggctt
     3841 taaaagaaga aaatgttaaa attgtttttg gttatcctgg aggcgctgcg cttaatattt
     3901 atgatgaaat ttacaatcaa aagtatttta aacatatttt agtgcgtcat gaacaagcgg
     3961 ctttgcatgc tgctgatgct tacgcaagaa tgagcggaga agtgggcgta gctatagtta
     4021 caagcggacc aggttttaca aatactatta caggtctagc tacggcttat agcgattcta
     4081 tccctttggt gttgatttca gggcaggtgg caaattctct tattggtaca gatgcttttc
     4141 aagaaattga tgcagtaggc atttcaagac cttgtgtaaa gcataattat ttagttactt
     4201 gtatagaaga gtttccacgc attttaaaag aggcttttta tatagcaaga agtggtagac
     4261 ctgggcctgt gcatatagat gtgccaaaag acgtaagtgc aactttggga ctttgggaat
     4321 actctaaaga aatttccatg aagacttata agcccgttta taagggtaac tcaaagcaaa
     4381 ttaaaaaatt tgcagagctt ttaaaagaag caaaaagacc tttgttttac ttaggtggag
     4441 gttgcatcag ttctaatgca agcgagcaaa tcagagagct tataaaattt acaaaaattc
     4501 cagcagttga aactttgatg gcgcttggaa ctttaagaag tgatgatgtt tttaatctta
     4561 aaatggcagg catgcatgga agctatgctg ctaatatggc tttaagtgag tgtgatttgc
     4621 ttgtgagtgt aggagcgaga tttgatgata ggattacagg aaaaacaagt gaatttgcta
     4681 aacatgcgac tatagttcat gttgatattg atcctagttc tatttcaaag attatcaatg
     4741 cgcattatcc tatagtagga gatattaaag aagttcttaa agagctttta gaagagctta
     4801 aaaaggaaaa tttcaacaca acttttaaag aatggcatga aactttaaag cgttataatg
     4861 aactttatcc gctttcttat gaagatagca atgagatttt aaaaccgcaa tgggtgattg
     4921 aagaatgtgc gaaaatggct ccagatgcaa ggattattac cgatgtgggt cagcatcaaa
     4981 tgtgggtagc gcagttttat ccttttaatt atccaagaca acttgcaaca agtggagggc
     5041 aaggaactat gggatattct ttacctgctg ctttgggtgc aaagcttgct gtgggtgaag
     5101 aagtggtgat taatttcgta ggtgatggat cggttttaat gaatatccaa gagcttatga
     5161 ctgcttatga gtatggtata aaagctataa atattatttt aaataatgcc tttttaggta
     5221 tggtaagaca atggcaaagt atgttttata aagagcattt ttcacaaact gatttaagca
     5281 ctcagcctga ttttatcaaa attgctcaag gttttggctg tgaaggttat gaaatttcaa
     5341 gcaaagaaga attcattcaa gcttttagcc aagctttaaa aagtgataaa acctctcttt
     5401 taaatgtaaa aattgatcgc tttgaagatg ttttacctat ggtgcctgca ggaggtgcga
     5461 tttataatat gattttacca aaggcaaagg atagacaatg agaagggttt tatcggtaat
     5521 tgttttaaat gagcatgggg ttttatctcg tatagtagga cttttttcag gaagaggtta
     5581 taatattgac tcgcttacag tagcaccttt ggaaaataaa gaattttctc gtattaatat
     5641 agtcacttca ggaaatgaaa gaacttttga gcagatagtc aaacaacttc ataagctcat
     5701 tcctacttat aaagtgatag aaagtgaaga atttattgac aaagaaatgg ctttggtgaa
     5761 aattccttta aatgaaaatt taggtggact tgatgccgtt ttgaaagctt ataatggtac
     5821 tattgcgaat agcaatgaga attttttgtt tttaatggtt gctgatgatg caaatcgcat
     5881 tgataatttt ttaaaaacaa ttaaaaaata caatcctagt gatatagttc gcagtggatc
     5941 tgttttgatg gagattaaat gaaattaagt gaaatagcag aatttttaag cttggaatat
     6001 aaaggagagg atatagaaat cagtgcttta aattctttat tgaaagcaaa ttttacagag
     6061 cttacttatt gtgagggtga gaaaaatacc aaagatatac ctcacacagg agctgctgct
     6121 attttagtat ctaaagaata tgaaaattta gtacctaaag atactaaagc tttgattact
     6181 caaagtccac atttgagttt tgctttttta agcaagcttt ttgctaaacc tttgataagc
     6241 acagctaaag aaaaagtaca aaatatcgca aaaagcgcaa gaatcatgcc taatgtttat
     6301 ataggtgata atgtaaatat cggtgaaaat gtaatcatta tggcaggagc ttatataggc
     6361 gataatgtca gcattggtga tgagagtatt atccatccta atgtagtgat ttataatgac
     6421 actaaaatcg gtaaaaaatg tcatttgctt gctaattgtg taataggaag cgatggcttt
     6481 ggttatgcgc acaataaaaa cggcgaacat tataaaattt atcataatgg caatgtgatt
     6541 ttagaagatt ttgtagaagt gggggcttgt acaactatag atagagcagt ttttgatagt
     6601 actattatca aagcaggtac taaggtagat aatctggttc aaatcggaca taattgcaat
     6661 ataggtcaaa attgtatcat tgtggcacaa actggaattt caggttcaag tgagttagga
     6721 cgcaatgtta ttatgggtgg tcaaagtgca acgagtggac atttaaaaat aggtgatttt
     6781 agcaccatag ctgcaagagg cggtgtgagt aaaaatttag aaggtgggcg tgtttatggt
     6841 ggttttccta tcatgcttca aaaagattgg ctaaaacttc aagctaagat tgctatgaag
     6901 tttaagaagg actagcttta aattcttttt ttagtcttct tacttcaaaa taaaattgta
     6961 tatagcctcc cttataccaa gctttatttg cttgcataaa agctagtcct aatttataag
     7021 tgaggctttg tttttctttt aatgcttctt tataatctgg gtaatcttca agcttaggaa
     7081 gttggatttt aggatattct ttatgggcga ttgtaagggc tatgaggaga aaaggcattt
     7141 taatatagcc taaaagactt tttgaatttt ttatcatgca agagccaagt ttataggcaa
     7201 ggtgattgtg catcctggcc ttggctgaat tagcttctat aagggtgatt tttggcataa
     7261 aaaaatcaag ttttttgcct aattttttag ctaaaatttc attgcttaat ttttttgaaa
     7321 taagctcttg ttctaaattt tcaagttcga gtttttcttt tttgaaatga tgagtattga
     7381 gagtattttg taaagtttcg ttttgcttat ttagtgtgtt aatcttggta tgaagatgtg
     7441 taatttgctc ttgcaaaggt ttttgtttga cactatccat tctttgacaa tactcttcaa
     7501 tcaattcttt ataaagctca aaaggtggaa gtatgtaggt aaaatcataa gtaatatcaa
     7561 tattttcttt agtttccaaa ctttgcaagt ctatgttttt ttcgtaaaaa ttctcatcag
     7621 gcttgactaa gaaaaaatga gccaaaccta tatggctgat attgtttaaa atttcaacat
     7681 ttttgtgtag ccatatgcta ccttcactaa gtgcttcatt ggtcttatta aaatataaaa
     7741 aactttcttc atcaataatg aaaaattcct ctaaagtatg caaatgatag aagtttgaag
     7801 ctataccttt gatgattttt tgctttgtat tttttagaat aaagcttgcg atattatagg
     7861 gtttaacttc aaaaaaatta caaatataaa ttcctaaaat accatatcct gagtaagaat
     7921 tttggaattt taaaacattt ttttcatcca gtttgtatat ttgttcgttt agtaaagaat
     7981 ttttaagttc cttgcaggat aaattttgat taaaaagttc tttaggggat tttacaagaa
     8041 aatggggcat tttaaaatgg gtttgtagat gttttttgaa gatatgaaga ttggctatga
     8101 ttttttcgcc agtaattctc attatagaag aaagttgatg aaaacagtct gtggtaacaa
     8161 aaaagggatt aagtcctttt tcattataat atctttgcat gtcaatgcaa ttaaaattat
     8221 attgcttgat tttttctcta ttaaaattat caatgatttt tatgtgttta gccgtgtttt
     8281 cactaggctc taagggtagg atgagaaaaa ttacttttgt atttaaatta gccagagcct
     8341 tacataaaag ctcgaaattt ctagccaaga tttgaaaaca aagcccactt ctagcgaaca
     8401 tatcgtattc attgatatta gtttctataa gaatagcttc ggcatttttg aaaagttctt
     8461 gatttttagg atgagtgagt tcgtaaagtt tttgaagtcc atcacagcca cctagggcaa
     8521 gattatgaaa ttctaatccc cccccccatt tttcaatgcc atcttttaag cctttttgta
     8581 agccaatgtg aatgagagaa ttgcttccac caagcaaaat gatatttttc atatttaaat
     8641 ccttaaaata taaaataaaa gagtgattat atcaaaaaaa ataaaattag aagggttttt
     8701 aaatctaaaa agctagagtt gaaaaagaga gttaaagtta aaaaggtggt attttttggc
     8761 ggggagctga catttataaa atcagcatcg catcgccata agagtaaaag cgatattttt
     8821 cttttatggc gagttcataa agttttaaac actgttctct accgataaaa gctgaaacta
     8881 gcatgataag agtagatttt ggtaaatgaa aattggttaa aagatgattt tgtcttatag
     8941 gtggattttg cgggtgtaaa aaaagatcac aaaaaccatt ttttgtttta gttcttgcat
     9001 aatattctat ggttcttgtt accgttgttc ctacgcctaa aatagcttgt ttagaatcta
     9061 taatttcaca tgctctctta ggaatattaa aaaattcgct atgcatttta tgctcttgta
     9121 tattttcgca ttccacgctt ttaaaggttc cagctcctac atgtaaggtt aaatgataaa
     9181 tttcgtgttt ttttcttaaa ttttcaagca tagtctcact aaaatgtaaa cttgcagtcg
     9241 gagcagccac tgcgcctaaa ttttttgcaa agatactttg ataatctttt aaatcgcttt
     9301 tttcatcctc tcttttaata taaggaggca agggtatatg tcctattttg tcaagtaggt
     9361 tgtaaagatt tgaggtgtct aaggttttat cattttgaaa aaattgaact tttcgaagac
     9421 catcatttaa aagttctaca acgcgcgctt ttaaatcctc tttaaaatat aagatttcat
     9481 cttttttaac acgcccttta atttgagcta gaaaaagtgg attgtgagaa tttaaaaaag
     9541 gttgatgtaa gaaaagctct atttttcctc cacttgcttt attaccataa attcttgctt
     9601 taataacttt ggtatcattg aaaaaaatcg cgcagttggg taaaaagtct tgtaaatttt
     9661 taaaagtagt atgaaaaatt tctttgtttt tgcgatcaaa aaccaaaagc ctagcatctt
     9721 cttttggatt tgtaggatag ttggctatga gttcattagc tagagtgtaa ttatagcttg
     9781 aaagaagtaa gtctttattc atcactttct ttatcttttg gggcaggatt taccttttga
     9841 acaattaaaa tagaaagtcc ataaagtccg caaagtggtc ctgccattaa aaattgagat
     9901 aaaacatcag gtggagtcat aaaggctgaa aaaacaaaaa taactaaaac agctatgcga
     9961 aaatggcgtt ttaaaaaact atcatctata agtccgattt tagcaaagaa aaaggcaatt
    10021 acaggcattt caaaagctaa gccaaaagcc acaacaactt tcgtaaaaaa atctacataa
    10081 gttcctatgg taatcacagg attaaaatct tcatttaaac caaaattaat taaaaattta
    10141 aaagccaaag gcactacaac aaaatagcaa aaacaagccc ccaaggcaaa cataatgctt
    10201 gcaaagctaa caaaaggcac cacaaggcgt ttttcattat cataaagtcc tggagctaca
    10261 aatttccaaa attgccaaaa aattacaggt agagaaaaga taaaggctgc aaaaaaacta
    10321 accttcattg cggtaaataa ggcttcttgt acttcaatta cattcacatg tttggctact
    10381 tcgggtaaaa cagctataag tggagctttt aaaatatcta agatatagct tcgtagagaa
    10441 aaacatacaa taaacataac tacaatgcaa gcaacgctta taaaaaggcg ttttctaagt
    10501 tctattaaat gaggttttaa ttcttcaaac atttattttt ccgtttttat cttgtgtttc
    10561 taatttgcta agatttggtt tttcttctgt atttaaattt tgtccgctaa ggttattttt
    10621 tactttatca tctctgctat caaaggttaa atctaccttt gttttatcta aaatatctct
    10681 cttaaggtca tcaaattctt caaagctgag ttttttgcgt atattttcat tagtgcttga
    10741 aaattcatct ttgtatttct tagcttcttc ttttaagtca ttgatgcgta tttctttttc
    10801 tatgcttgat tttgcatcat ctatgttgcg ttttacagcc tttagaattt ttgctatttg
    10861 tactatagct tctggaagtt tatcaggtcc taagactaaa atcgctataa ctaaaataac
    10921 tataatttca ccaaaactca ttaatcatta ctctttgatt tgatatttta ataaatattt
    10981 tacttaaaaa acttaaattt aagatgagag atataaagca agttcatcgc taatgagaaa
    11041 attaggatta aaatatcttt tatttttgta aaaaagtttt ttttctttta ataatatatt
    11101 tattttgttt ttttgccatt gattgagttt tgtttcatca atccctacta tacttctaag
    11161 tcctaaaaat aggtgctcta aattcaagtc tttggaactt agttgctcta tagatctaaa
    11221 agtaggattt tctatgtaat tttttaaatt ttttgctgta taaaaacgct tattttcata
    11281 aaatcctact gcacttaatc cacaagctag gtagtttttt ccttgccaat aagcaagatt
    11341 atgtttgcaa atttgggctt tggtttttga aaaattactg atttcatatt gaaaaaagtc
    11401 aagctctaga agttgtttga tgaaaaattt cattaaatta ggagcatttt ttttgaaatg
    11461 ttctttttta gcaaaggctg tgtttgattc tatggttaaa ttataagcac taaggtgtgt
    11521 gattaaatcc ttgatttgtt ttaagtgtaa gagttcaaat tcaagcattt ttttattgtc
    11581 taatttcgta tcataaataa gatctaaatt gatattttta aaacctactt tatttgcgtt
    11641 ttctaatgtt ttgataatca tttcttgatt gtgaattctt ccaagaaagt gaagtttttt
    11701 aggatgaaaa ctttgaactc caaaagaaat gcgattaact cctagatttt tcatattttt
    11761 aagccaattt aatgttgctg agttgggatt agcttcgcat gaaatttcta catttttatc
    11821 tagtaaggga tataaaattt taaaaatatc ttcataatta tacgcattaa cacaacttgg
    11881 tgttcctccg cctatgaata aggttttaat ttgatttgat tgaatgttaa attgttttaa
    11941 ttgaaaaaca atatcttctt ttaaagcctt aaaataggct ttttcataat catttttttt
    12001 caaacttgta aaagcgcaat aattacattt gctttcacaa aatggaatat ggatataaaa
    12061 atgcataaaa accctaaaat attttattaa atttttaatg tattttaata aaaatttgat
    12121 ttgatttagg ttaaaattat atccttgaga tttaaggaac aatattgtgg aaaacgagaa
    12181 aaattataga ccaaatgttg cagctattgt tttatcaagt tcttatcctt ttgagtgtaa
    12241 gatttttata gctagaagaa gtgatatgga taatatttgg caatttccac aaggaggtat
    12301 tgataaaggt gaaagtgtca aaaacgcttt atttagagaa ctaaaagaag aaataggcac
    12361 tgatgaggtt gaaatcattg ccgagtatcc agaatggttg agttatgatt ttccgagtaa
    12421 aattgttaaa aaaatgtatc cttatgatgg gcagattcaa aaatattttt tagtgcgttt
    12481 aaaacacggt gttacaatca atattaatac caagcatccc gaatttgatg attatcaatt
    12541 tgtgagtgtt aaacaaattt ttgaaatgat taatcatttc aaaaaaaata tttatgttaa
    12601 agtgatcaaa tattttgaaa agaaaggtta tatctaaaat gcttatagtt caaaaatatg
    12661 gtggaacaag cgttggaaca cttgagcgta tcgaagcagt agccaatagg gttatccaaa
    12721 gtgcgcaaca gggtaatcaa cttgttgttg tagtatctgc aatgagtggg gtgacaaata
    12781 ctcttattga gcaagctgaa tattttagta aaactcctaa tggtaaagat atggatatgc
    12841 ttttaagcag cggagagcgt gtaacaagcg ctttactttc tatcgcttta aatgaaaagg
    12901 gttgtcctgc tatatcattt tctgggagaa aagcaggaat tattacagat agtgttttta
    12961 caaaggcaag aattcatcat attgatacaa aagcgataaa atcagaactt caaaatggta
    13021 aaatagtcgt tatagcaggt tttcaaggtg tagatgagga aggtaatgta actaccttag
    13081 ggcgtggtgg aagcgattta agtgctgtgg cggtagcagg tgctttaaat gcggatttgt
    13141 gtgaaattta tactgatgtt gatggggttt atacaacaga tccaagaatt gaaccaaagg
    13201 caaagaaatt ggataaaatt tcttatgaag aaatgcttga acttgcaagt ttaggtgcaa
    13261 aagttttgca aaatcgctct gtagaacttg caaaaaaatt aaatgttaat ttagtaacta
    13321 gaagtagttt taacaataac gaaggaacaa tgataacaaa ggaagatgga atggaacaag
    13381 ctttagtaag tggtattgct ttggataaaa atcaagcaag agtgacttta agaaatatag
    13441 aagataagcc tggaatcgca gctgaaattt tttctgtttt agcaaatgaa aatattaatg
    13501 tagatatgat tatacaaaat gttggagttg atggtgctac aaatttgggt tttacggttc
    13561 ctcaaaatga acttgaatta gccaaaaatg ctatgcaaaa aattttaagc tcaaaaacaa
    13621 ctatagaaag tgatagtgct gtagtaaaag tttctatagt cggcgtaggt atgaaatcac
    13681 attcaggagt ggcaagtaaa gcttttaaag ctttagctga tgaggggatt aatattggta
    13741 tgatttctac tagtgaaata aaaatttcaa tgatagttca tgaaaaatac ggagaacttg
    13801 cagttagagc actacatgag tgctacggac ttgataaata aatgagtgat tttttaagtt
    13861 ttactcttga aaatattcgc aatggcggag cttttatggc atggttggag tcgcgtcgtt
    13921 tagaatgggc tcctttgatg gctgcaagac ttaaatatct tttagaagga cgcacttttg
    13981 tattaatgtg tgatgaacaa agatcttggt atgaagagta ttttttaaaa aatataaatt
    14041 caaaagccac tcgtcccatg ctcccttttg tgtcgttaaa ttctttatgt aagaagaaag
    14101 tacaaagttc agaagatata gctttactta atgacttgct tgacatttct tttcctaatg
    14161 gttatgtata tttttatata ggaagtgctt ctgataataa atctttaatc gctaaatcaa
    14221 gagatgatag tttattgtgg ctttttgatg agcagttaca agatagtttt tatttaaatt
    14281 ctaaagataa agacttggat atcaagctta ttagtttata tcaacttttt gatgtaagtt
    14341 tggatgcaat attattttcc aaggtgcaat taggataaat attttgttta ttagtaagat
    14401 tattatcagt gaagattttt taggtattaa ggaagaaatg attaataatt ttggtattaa
    14461 aaaattaaga ttttttatac cacaaaatga atttttactt gatgatgcaa gagcggttga
    14521 aaaagaaagc tatatcgcag aaactgaaga aaaaattatt gttttaatgg cggattctta
    14581 taggatagaa gcgcaaaatt ttttacttaa actccttgaa gaacctccaa aaaatattaa
    14641 atttcttatt gtgatacctt ctaaaaattt acttttacct actataaaat cacgtcttat
    14701 ttgtgaaaaa agaaaagttg aaaaggaagt taaaaaactt gatttagatc ttaaaagaat
    14761 ggatttaaga atgctttttg attttttgca aaaaaatgaa aatttggata aaaatgaact
    14821 tatggatcaa atcgcattgc ttgctaaaga atgtgtgaaa tataaagatt ttaacgctga
    14881 agaattagag tttttttatg aaagttatga gcttgcaaaa ttaaattcta aaagcggggt
    14941 gcttttagct actcttttat taaattacta tacaaagaaa taaaatgaaa ttttttaaaa
    15001 tcaatccaaa caccgatttt aatttgcttt gttctttcat aaaccctcat aaaatgggac
    15061 aaaagatcat gagtgaaaaa acaaaaattc attttatttt tatcaaagat atttctactc
    15121 ctgcggcaaa tattttaaaa caagatgctt taagagtagg agctgaactt attactcata
    15181 aagaagtaat tactgcaaaa atcactcatt caaatgcgct tttaatggca agtaaagagc
    15241 aaattcaaaa gcttgttgtc aaagaaaaac ttcaagattt tggacttaaa aatttggctc
    15301 tttttttgca aaaagatttt ttaaaaccga aaaaagccga gcttatggca gtgattaatg
    15361 tcaatgaaga cagttttaat gcaaaaagtc gtgtgagtga agaagacttt gaaaaaaggc
    15421 ttaatgactt tcttgcttta aagcctgaat atatcgatat aggtgcggta agttcaagac
    15481 ctgggagtga gtattgtggc aaggaagagg aatttaaaag actgaaaaaa gtacttgact
    15541 taatttatga gaaaaattat tacgaacaag caatttttag tttagatagt tttgatgaat
    15601 attgtctaga atatgcttta aataagggtt ttaaactcat taatgatatt acaagtttaa
    15661 gaaatcttaa tctagccaaa cttgcaagta aatatggggc aaaatattgc ttaatgcaca
    15721 tgcaaaacaa tccaaataac atgcaagata atccttttta tgaagatttg cttgatgaga
    15781 tgactttgtt ttttaaagaa aaacttgagc ttttagaaag ttttggagta aaagaaagta
    15841 ttttagatgt aggtattggt tttggaaaga gtgcggggca taatatgatt ttaatcaaac
    15901 acttagaaca ttttttgcaa tttaataaac ctttacttat aggtgcgagt cgtaaaagtg
    15961 tgattaatgc gtattttcaa agcgagatta aagatcgttt agcgggaact ttatatttgc
    16021 atttaaaggc ttttgaaaat ggtgctagta ttataagagt gcatgattta tatgagcata
    16081 aacaactttt tgctttagcg caggcaatgg ataatatagg agtttagatg aaaaaagaag
    16141 agtatttaga aaaagttgct ttagctaatt tgtggatgag ggcatattat gaaaaagatg
    16201 aacccttggc tagcgatgaa gaatacgatg ctttaatcag agaattaaga gtttttgaag
    16261 aacaaaataa agatgaaatt tcaaaagact ctccaacgca aaaaatagct cctactatac
    16321 aaagtgagtt taaaaaaata gctcatttaa agcgtatgtg gtcgatggaa gatgtgtttg
    16381 atgagagtga gcttagagct tgggcaaaac gcgcaaaatg tgaaaaaaac ttttttatag
    16441 agcctaaatt tgatggagcg agtttaaatt tgctttatga aaatggtaaa ttagtaagcg
    16501 gcgccactag gggcgatggc gaagcgggtg aggatataac gcttaatgtt tttgagatag
    16561 aaaatatacc taaaaatata gcctataaag aaaggataga aattcgtgga gaagtggtga
    16621 ttttaaaaga tgattttgag aaaatcaacg aaaaaagagc ccttttaaat caaagtttat
    16681 ttgccaatcc acgcaatgct gcaagtggga gtttaaggca gcttgataca agcatcacta
    16741 aagaaagaaa tttgaaattt tatccttggg gagtagggga aaatacctta aatttcacca
    16801 aacacagcga ggtgatgcaa tttatcagag agcttggttt tttaaaggat gattttgtaa
    16861 gactttgcgc taatttagac gaagttttaa aagcttatga tgagctttta gctctaagag
    16921 aaaaaaaacc tatgatgatg gatggaatgg tggtaagagt tgatgatctt gcactttgtg
    16981 aagaattagg ctatacggta aaatttccaa aatttatggc agcttttaaa tttcctgcgc
    17041 ttgaaaaaac cacgcgttta ataggggtaa atttacaagt aggaagaagt ggagtgatca
    17101 ctcctgtggc agttttagaa cctgtaaatt tagatggggt tgtagtaaaa tcagccaccc
    17161 ttcataattt tgatgaaatt gcaagacttg atgttaaaat caatgatttt gtaagcgtga
    17221 taagaagtgg cgatgttatc cctaaaatca ctaaggtttt taaagagcgt agagaaggtt
    17281 tagagatgga aatttcacgc cctaagcttt gtcctacttg ccaaagtgag cttttggatg
    17341 aaggaacttt aataaaatgt caaaatatag attgtgaaga tagacttgta aattctatca
    17401 ttcattttgt ttctaaaaaa tgtcttaata tcgacggact gggagaaaat atagtagaac
    17461 ttttatacaa gcacaaaaaa atcactacgc ttgagagtat ttttcattta aaatttaatg
    17521 attttgaagg tttggaaggc tttaaagaaa agaaaattaa caatctttta aatgccatag
    17581 aacaagcaag agaatgtgag ctttttcgtt ttatcacagc tttaggaata gagcatattg
    17641 gcgaggttgc ggctaaaaaa ttaagtttaa gttttggtaa agagtggtac aagcaaagct
    17701 ttgaagctta tgccaattta gaaggttttg gagagcaaat ggctttaagt ctttgcgaat
    17761 ttacgcgtgt taatcgcaca agaattgatg agttttacaa gcttttaaat ttgaaaatag
    17821 aaaaacttga aatcaaaagc gatggtgtga tttttggtaa aacttttgtg attacaggca
    17881 ctctttcacg cccaagagat gagtttaagg ctttgataga aaagcttggg ggtaaggtaa
    17941 gcggctcggt ttctaaaaag actgactatg tgctttttgg agaagaggca ggttctaagc
    18001 ttagtaaggc taaagagctt gaagtaaaat gtatagatga aagtgctttt aatgagcttg
    18061 ttaaagaata gttcttatat tttaacgctt ttaagccttt ttggcttttt gctaacttgg
    18121 caaaggagtg ctttttcttt atttttttta atttctattt ttttaacact tttttgggaa
    18181 ttctttttat ttttaaagct tagaaaaaat attataaaag aagctacttt gattaaggga
    18241 agtttgtttt atcgtgttag tatgggggat ttttatcttt atatttttag ttttttcttg
    18301 gcgatttttg gacttgtttc tttattttta aattttttaa atcttgaaaa aattgatttt
    18361 gtttttatat ttataatttt acctttattg atgatatttt taaaaaaaga attgcatttg
    18421 caatttgtag ataatgctta taatgatttt agaatagttg ttatcgctag tttttttact
    18481 gctttatttt atgcatttta tgggcttttt tttacttaca atgaactttt aaatttagaa
    18541 c
//
LOCUS       DARBBO010000025        18254 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.025, whole genome shotgun sequence.
ACCESSION   DARBBO010000025 DARBBO010000000
VERSION     DARBBO010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18254
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.025"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..900)
                     /locus_tag="SB854_000691"
     CDS             complement(<1..900)
                     /locus_tag="SB854_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956718.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVTEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFCMQNDFLNFQKKIDVDSALDLLKEKFETTSQNLTKIS
                     HEKDRYLHLLEENLYQLVNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNKNVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFF"
     gene            complement(902..2704)
                     /gene="uvrC"
                     /locus_tag="SB854_000692"
     CDS             complement(902..2704)
                     /gene="uvrC"
                     /locus_tag="SB854_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEG0956719.1"
                     /translation="MIKENLENELKTLPNSTGVYQYFNQEGKLLYVGKAKNLKNRVRS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFIATNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVDFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKLISKEKYLEILDEAMHALLNPSVLLKNLEKQMLVLAQ
                     NENYEEAAKVRDQIAMIKDLEVKVEIDIAKLEDFEVFALAFENSMLSTLRFVVQNGKI
                     ISANSKITPIKNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILN
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKALLDLAKEIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
     gene            complement(2697..3191)
                     /locus_tag="SB854_000693"
     CDS             complement(2697..3191)
                     /locus_tag="SB854_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956720.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAANKNKNDEKLSKNSYLELSKGEFKNCFEDEKLFKKFEDLRELIKKG
                     SNLD"
     gene            3330..4865
                     /gene="guaA"
                     /locus_tag="SB854_000694"
     CDS             3330..4865
                     /gene="guaA"
                     /locus_tag="SB854_000694"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEG0956721.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLNLPVLGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEIKKDNALFKNLPKKQTVWMSHSDKVENLPQGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESIWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSGEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVTDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGSSKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRASLELLRKADVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYNNAVCIRVVDASDGMTATFSHLPYEILENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            4951..6411
                     /locus_tag="SB854_000695"
     CDS             4951..6411
                     /locus_tag="SB854_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956722.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKLVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMMADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRKNRLASLEAQMKTLQSEINLKSNATDADPEKLKA
                     RQERLAKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDVKIWHLSLKSSGVKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            6651..7901
                     /gene="purD"
                     /locus_tag="SB854_000696"
     CDS             6651..7901
                     /gene="purD"
                     /locus_tag="SB854_000696"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEG0956723.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IEETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHSKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            7898..8350
                     /locus_tag="SB854_000697"
     CDS             7898..8350
                     /locus_tag="SB854_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEG0956724.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIVGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAVRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            8340..10388
                     /locus_tag="SB854_000698"
     CDS             8340..10388
                     /locus_tag="SB854_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HEG0956725.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVIIFS
                     DFYFITANKAIYNEKTGDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKVSAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYINTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNNPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYVLPGAKSGKITQDYLEEYDKENEHTSLYAVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHANMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGVYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            10458..12617
                     /locus_tag="SB854_000699"
     CDS             10458..12617
                     /locus_tag="SB854_000699"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEG0956726.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSVVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIESPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEYPEILAFIENNFQKQ
                     IKEAINQMAKSERASKLNKIAKEISNLEIAKDWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYVIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFKDNKYAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQEILKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIVEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGPKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            12614..13096
                     /locus_tag="SB854_000700"
     CDS             12614..13096
                     /locus_tag="SB854_000700"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HEG0956727.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSVKSRQDGFYYQHPRNRF
                     WPILETLFDVRLENITEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLSPIL
                     SQTKIQAIFTTGQSAYKFFIKFHPRLKAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(13135..13797)
                     /locus_tag="SB854_000701"
     CDS             complement(13135..13797)
                     /locus_tag="SB854_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HEG0956728.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     IN"
     gene            complement(13815..14999)
                     /locus_tag="SB854_000702"
     CDS             complement(13815..14999)
                     /locus_tag="SB854_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0956729.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVTEF
                     FSISTVFDMVAFLIACSFVTIYFFIHERKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAASGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVVSNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGLMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            15053..15508
                     /locus_tag="SB854_000703"
     CDS             15053..15508
                     /locus_tag="SB854_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEG0956730.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFISSAGTSG
                     EHDGEGMHYGTKNKLAQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            15760..17034
                     /gene="porA"
                     /locus_tag="SB854_000704"
     CDS             15760..17034
                     /gene="porA"
                     /locus_tag="SB854_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 major outer membrane porin protein PorA"
                     /protein_id="HEG0956731.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVNNSNLNNNKQDHKYRAQVNFSAAIADNFKAFIQFDYNAVDGGTGVNNVKN
                     AEKGLFVRQLYLTYTNEDVATSVIAGKQQLNLIWTDNAIDGLVGTGVKVVNNSIDGLT
                     LAAFAADSFMAAEQGADLLGHSNISTTSNQAPFKVDSVGNLYGAAAVGSYDLAGGQFN
                     PQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELDDKTHANGNLFA
                     LKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDTG
                     RNIFGYVTGGYTFNETVRVGADFVYGGTKTEAANHLGGGKKLEAVARVDYKYSPKLNF
                     SAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(17149..18240)
                     /gene="dnaJ"
                     /locus_tag="SB854_000705"
     CDS             complement(17149..18240)
                     /gene="dnaJ"
                     /locus_tag="SB854_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEG0956732.1"
                     /translation="MTQNADKETIKKAYRKMALKYHPDRNQGDKEAEDKFKLVNEAYE
                     VLSNDEKRAIYDRYGKDALKGGGFGSNSSGFGGFEDLGDIFSSFFGEGFGSSRRRKSS
                     NDEKIPSDFIVNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGKLQTCPKCQGR
                     GQIGVSQGFITFAQTCPDCQGIGEKASEKCSDCKGLGYNESKDSVELNIPEGVDTGMK
                     LRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQAILGQSIKVPT
                     IRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRMGNQIVQISIKFPTSLNDEQKELLE
                     KLSESFGIKDGMHQEQKGLFEKITNWFKS"
BASE COUNT         6526 a         3057 c         2813 g         5858 t
ORIGIN      
        1 aaaaaacaag gttgcatcaa aatcattttg tttaaaaagc aatacattat tttgataagg
       61 ggttttaaat tttaaagtgc aaaccttatc aagcttgttt tgcaaaatat tttcaagatc
      121 ttttttttca aaaggtaaag ttaaaaaata ctcataatgt gtatttttat gccgacccat
      181 cactataaaa tcataatttt tctttacatt tttattgaaa attttatcct tgataaaaat
      241 caaatgaaag tcattaacat caaaacttaa atttttaaaa caagtgcttt ctatgccaaa
      301 atacgaaagt aaatttgcaa gtaaaaaatt ctcaagctca tcattattaa ctatggccac
      361 acttgcttca aattgcaaaa cctttccatg agatgttcct ataatgcttt tatgatgctc
      421 taaagcctca tttaattcta atctaatttg atctttttga gaatttaagg catttaaaat
      481 caaagaatta atttctttat tatacccttc atttaagcaa cgcattgcat tagatatatt
      541 tacaagctga tataaatttt cctccaataa atgcaaatat ctatcttttt catgggatat
      601 tttagttaaa ttttggctcg tagtttcaaa tttttccttt aacaaatcaa gcgcactatc
      661 aacatcaatc tttttttgaa aatttaaaaa atcattttgc atgcaaaaaa ttttttgata
      721 tattttgttt atatttctat tttgcctaaa agcaaaaata aaaagtgtta aagataaaac
      781 aaaaatgcta gaaaacatac ctattttcag ttgttcagta acactatcaa gctttgagat
      841 atcaatactt aaatacgcta aaattagatt aaaaataaaa attatccctg ctaatatcaa
      901 atcaattttc ctttatcttt tgcgccgctt tcctgcctac aagcattgta agatctttaa
      961 aatcagcctt atatatagat tcaaaatttc cataatacgc taaaagtttt tgtataaccc
     1021 ctgaactaag tcctaaattt gcaagcttag aacttttcaa gtcctgtttt ttcttagtat
     1081 tttgatgaaa gctgatagca aaacggtgtg cttcatctct taatttctgt aagaattgta
     1141 gttttttatc gttaatgctt agactaaatt ctccttttaa ggaatgaatt ttatccttag
     1201 cacccccttt agctctatgt gcttttgcat cgattttttc ttttgaaata gctaaaatat
     1261 cgacatttgc cccactactt acaatgattt ctttagccaa atcaagcaaa gcctttcccc
     1321 catctataag ccataaatca ggaggaggta ttttatcaaa gtccaaagcc ctacgcgtta
     1381 aaacttcacg catttgatca tagtcatttt tatgttttaa atgaaatttt ctatattttg
     1441 acttatccca agaatttatt ctataagtta ccatagctcc aacatttgcc acgccttgca
     1501 aatgagaatt gtcaaaaatt tctatatcat ttggtaaatt ttcaagctca aaataaaact
     1561 ttaattcttt ttgtatagta aaatcatgat ttttttgctc tttttctata tttaaaaggg
     1621 cattttgaaa agccaaatca caaattcttc ttttttctcc tattttaggg attttaatac
     1681 tgattttttt atcaaacctt tggtttaaaa tttcttctaa aagcactcta tcttcaaatt
     1741 cttcataaac ataaataaca tttgcaagca aaggaatatc catgctaaaa ttttctaaaa
     1801 tcagttgctt ataaatttca ttttgatccc attgtatatc attttttata ggagtaatct
     1861 tagaatttgc actgataatt tttccatttt gcaccacaaa acgcaaggtt gaaagcatgg
     1921 aattttcaaa agctaaagca aatacttcaa aatcttctaa ttttgcaata tctatttcaa
     1981 ccttaacttc caaatcttta atcattgcaa tctgatctct tactttagct gcttcttcgt
     2041 aattttcatt ttgtgctaaa acaagcattt gtttttctaa gtttttaagc aaaacactag
     2101 gatttaaaag tgcatgcata gcctcatcta aaatttcaag gtatttttct ttgctgatga
     2161 gtttatcaca aggcgcaaga caacgagaaa tttgataaaa aatacaaggg gatttacaac
     2221 ttgctttttg ctttaaagga tagtataaat aaagcgcatc taaaagctct ctagcgcctt
     2281 taaaaaaagg gccaaaatat ttaattttgc ttttttttac taattttcta gtgatctcaa
     2341 agcgtggaaa ttcttcttca aaatccacat aaatataagg ataagtttta tcatctctta
     2401 gcaaaatatt atattttgga tgcagttgtt tgataaaaga attttctaaa atcaaagcat
     2461 cagcctctga attagtagca ataaattcca aatgcactgt ttcttcaatc attttttgaa
     2521 ttcttaaaga atttcttgga tttgcatgta aatttggagt aaaagcaaaa taagatctaa
     2581 cacgattttt aagattttta gccttgccta catataaaag ctttccttct tgattgaagt
     2641 attgataaac gccagtacta ttaggaagag tttttaactc attttctaaa ttctctttaa
     2701 tcaagattag aacctttttt tataagctct cttaaatctt caaatttctt aaataatttt
     2761 tcatcttcaa agcaattttt aaattcaccc ttagaaagtt ccaaataaga atttttagag
     2821 agtttttcat catttttgtt tttatttgcc gcataagtgt atttttgaga aaagattttt
     2881 atatctttta tatcaacaaa tccacttaaa ggatatttct gtccatatgc ttttatgaga
     2941 aatttaatat aaattttgct atcatcatga tttaattctt gataagctgc tggatgtaag
     3001 gttattatat ttaaaatatg attttttaca taaattttag caatcaaacg ttgcttagca
     3061 agcggaaaag aacttaaaaa atctttgcaa aaaaataagg tttttaaagg cttataatga
     3121 ggtttatcca tcaattcatt aataacagca ctagcatttt tagtcatctt aatattattt
     3181 ctttttccca taagatgatt ttagcatttc ttttcttaat tttcttctgt gcttgcggat
     3241 ataaaggcaa ccctcaatac acaagctatg aacaaaatgg ttcagtaaaa accattaaaa
     3301 aatacgaaca attacatagg tggtaaataa tgaaaaaagc agatatttta gttttagact
     3361 ttggctctca atacactcag cttatagcaa gacgcttaag ggaacaagga gtttatgcag
     3421 aaattttacc ttttaatgta agcttagctg atattaaggc gaaagaacca aaaggtatta
     3481 ttttaagcgg aggtccagca agtgtatatg caactgatgc gtatttttgc gataaaggta
     3541 tatttgactt aaatctacct gttcttggaa tttgttatgg tatgcagctt atggcacatc
     3601 attacaaagc tacagtagca cctgcaggac ataaagaata cggcaaagca aacatagaaa
     3661 ttaaaaaaga taacgctttg tttaaaaatc ttccaaaaaa acaaaccgtt tggatgagtc
     3721 attctgataa agtagaaaat ttacctcaag gttttgaagt tttagccaca agtgaaaata
     3781 gccctttttg tgtttttgga aacgaagata agaaattctt tgctctacaa tttcacccag
     3841 aagtacaaca cagcgaattt ggcaaaaata tcttaaaaaa ttttgctaaa tatgcttgca
     3901 attgtgaaag tatttggaat atgggttctt ttgcaaaaac tcaagcagaa aaaatccgtg
     3961 aagaagtagg caatgataaa gtgctttgtg ctgtaagtgg cggagtagat agtagcgtag
     4021 ttgctgcact tttagctagt gctataaaag agcaagttat agtagttttt gtagataatg
     4081 gacttttaag aagtggagaa aaagaacaag ttgaatttat gtttaaaaac actttaggca
     4141 tcgatctcat cagcattgat gcaagtgaaa ttttcttaag tcgcttagct aatgtcacag
     4201 atcctgaaca aaaaagaaaa atcataggaa atacctttat agaagttttt gaagaagaag
     4261 caaaaaaaca taaagatgta aaatatcttg ctcaaggcac actttatact gatatcatag
     4321 aaagttctgt tgtaggttca agcaaaacca ttaaaagcca tcataatgta gggggcttac
     4381 ctgaaaaaat gaatcttaaa ctcatagagc ctttaaaaga aatttttaaa gatgaagtgc
     4441 gtgccttagg acttgagctt ggacttagca aagaagtagt ttatcgtcat cctttccctg
     4501 ggccaggtct tgctatacgc attatgggag aagtaaatcg cgctagctta gaactattac
     4561 gcaaggctga tgtaatttta cttgaggaac ttaaaagtac aggttggtat gataaaactt
     4621 ggcaagcatt ttgcgtactt ttaaatgtta aaagcgttgg agttatgggg gataaccgca
     4681 cttataataa tgcagtttgt atacgcgttg tagatgcaag tgatggtatg acagctacct
     4741 tctcgcattt accttacgaa attttagaaa acataagtcg ccgtatcatc aatgaagtag
     4801 aaggtataaa tcgcgttgtt tatgatatct caagcaaacc acctgcaact atagaatggg
     4861 aataatccat tttttctagc tcttattttt aatataaaat ttttataaaa ataaggctag
     4921 aatttattta agaaatttca aggaagaaat atgcatggaa aaatagctat ttatatggat
     4981 tctacaggac gtggaactgt tacaaactca gcaaatacct tttttgactt taatcgccaa
     5041 atttggaatg ataaaaaaag tatgccaagt gttggtatgc ttgtggaatt tagaactctt
     5101 tctagcgaaa aaaaagcaga agacggcaaa ctcgttcaaa caagcaaaac cataacaggt
     5161 ataaaacctt caaaatttca agaattcaaa gaaggggatt ttatcactga gcatgatttt
     5221 tggaaaactg ataatgatga tgaattagaa gacttgcaaa actcaagaag aagtgcttat
     5281 ataacagaac tctatagaac aacagacttt gacactatag aaaaaattcc tctttctttt
     5341 actatacctc aagctataca aaaatatttt gcccatgaaa ttttatccgt agaaacactt
     5401 caagccaatc tacaagatga aaaggaaatt ccttgtatac ttgattatct tatacttaaa
     5461 agatttttat ttaaagctta tgatacttta atttttatgg ataatagcat agaccaaacc
     5521 caatttagcg cattaaaaag catcatgatg catttagaga attcgtataa gcaaatgatg
     5581 gctgatcaaa aaccaaatat cactaaaatt tttaacgaaa cttttttatc tttgcagtgt
     5641 cattaccaag ctttagtagc caccatagat acaagaaaaa atcgtctagc ctcacttgaa
     5701 gcacaaatga aaactttaca atctgaaata aatcttaaaa gcaatgcgac cgatgcagac
     5761 cctgaaaaac ttaaagcacg acaagaaaga ttggctaaac tacaaaaaga agcagaatac
     5821 tacagaacaa cactaaaaag acttgatgct ataagggaag atttttataa gaaaaattac
     5881 aatattttcg aaaatgcttt taaactttca cgagaaaaac tctttaaaaa aattgtcaca
     5941 ggtttaaatc tatgtgcaac cataatggat gtcaaaattt ggcacttatc tttaaaatca
     6001 tcaggggtta aaaattctta ttttactatg agtaatatag aaaattcttt ctgttctctt
     6061 tcttttgcag aacattactt aagtcgctta aataaatccg ctctaaatcc ttttgatcaa
     6121 aaacttttag tgtatattca aaaaatcaca aaagaacaaa gaaaaaaatt tttagttgtc
     6181 acatcggatt tagatttatt atgcaaatta aaaattgaaa acttttcaca aaatccgtat
     6241 tatttagtaa aatacgcacc taaaaaagta aattatcaat ctttaatgcg tgataacacc
     6301 tttgatatag tctatattga tgaaaaacat gtttgggaaa atgttgccga tattatttta
     6361 caaggaaagc attttgacaa atcaggaaaa accaaattta aactgattta agacatagaa
     6421 atttaagcta aattaagtta taatttcctt gcctaaacag tttgtagtat ttaaagtgat
     6481 ccaacacatt tttattaact gcgattgtgt gatttaccgt gttctgtggc atcgtttgag
     6541 ctttgaaaaa agtgagaagt tgcagccttt aaaaattacc tagcggtttt ctttgacttt
     6601 ttggggtcaa tctttgttaa acggctgttt gggtttaaaa ggagatataa atgaaaataa
     6661 tgattttggg tagtggtgca agagaatatt ctattgcttt agccttaaga agagtagaca
     6721 aaaatttaga gttttatttt gctcctggaa atggcgctac cgaaagtctt ggaacaaatt
     6781 taaacctaaa agatccagta gttttagcaa cctatgcaaa agaaaaaggt tttgatcttt
     6841 gtatagtagg aagtgaaagt tttttagctg aaggggttgt agatattttt aaacaacaag
     6901 gacttgctat ttttgggcca agtaaagctg ctgcaatgct tgaaacctca aaatctttta
     6961 tgaaaagctt tcttaaaaaa taccgtatca aaacagccaa atttttaaac acaaatgaca
     7021 ttgaaaaagc aaaaaatttt atatatagtt taacccctcc tatagtagta aaagccgatg
     7081 gactttgcgc aggaaaaggt gttatcatag ctaaaactca tgaagaagcc atagaagaaa
     7141 cagctaaaat gctgagcgga gaaagctttg gagatgctgg aaaactcgtt gtaattgaag
     7201 aatttttaga tggttatgaa ttaagcattt ttgcagtatg tgatggcaat gattttgttt
     7261 tacttcctgc agcacaagat cacaaaaaat tactcgataa tgatcaaggg ccaaatactg
     7321 gtggaatggg tgcttacgct cctagctctt tggcgaatga aagcttgctt agaaaagttc
     7381 aaaaagatat tattttacca actttagcag gtatgaaaaa agaaggagcg gaattttgtg
     7441 gtgttttatt tataggtgct atgatcgttg gaaataaacc ttacgtatta gaatttaacg
     7501 ttcgctttgg cgatcctgaa tgtgaagttt taatgccttt aatcgaagat cctttagagc
     7561 ttattttagc tgctactcaa agacgcttaa gacactcaaa aatcaaaatc aaaaaagaat
     7621 ttgcagtagg ggttgtatgc gcaagtgaaa attatcctta caaaagttca ccaaaaagtg
     7681 aaattaccgt aaataacatt cctgaaaact ctcatatttc ttatgctgga gtaagcctag
     7741 aagatggcaa attaatggct gatggtggaa gagttttagt ttgcgttggc acaggaaaaa
     7801 gtatagaaga agcgcaaaaa aatgcttata aactttgtga taatgtaaat ttcaaaggaa
     7861 aacaatacag aaaagacatc gctcatcagg ttctgaaatg aaagaaaatt tacaagaccg
     7921 cttagagcgt gaaaatctaa aaatagcaag ttttggaaaa agagttctag cttttttaat
     7981 cgatgatatg gttatttctt tgattgtgtt tatcattttt tatgatcgtc taatccaagc
     8041 aaaagattta tttgaaacaa ctcaaattgt aggaaatttt taccttggct tcatcttgct
     8101 tcattttagt tatcaagcaa tttttactta tctttatggg gcaagtttgg gaaaaatatt
     8161 atgcaaaatt atcatcttgg atgaaaatct tcttgataaa cccaatctca ttcaaagttg
     8221 catcaggtct gccgtaagac aagttagtgc tatggcgttt atgcttggat ttgcttgggc
     8281 tttaagcaat gatttacgca aagcttggga ggattatcta gcaaggacaa tagtagtcga
     8341 tgtggcgtaa attttcccta ttgctaggaa ctagcatagc tttaaatgca gcacaagttg
     8401 atatttacgc tcttgatgca aaaaaagaag gtgatattct tactgcgaac aatgatgtta
     8461 ttattttttc tgatttttat ttcatcactg ccaataaagc aatttacaat gaaaaaaccg
     8521 gagatgttga gctttttggc gatgttaaca tcctaagggg acaaaacgaa agatcacatt
     8581 ctgattatgc taaaatcaac ctaaattcca atcaagccga ttttagtaat tttttctttt
     8641 ccaataacaa tcttgaagta tggtttcaaa gcaaaacaag ccatctaaat gataaagtct
     8701 ttgaaagcaa agtttcagca gtttcaagct gcaatgttga agatcctgat tgggaaattc
     8761 gtttttcaaa aggctggctt aaccgggaaa ccaattttgt tcatctttac aatgcaagat
     8821 tatatgttaa aaatacccca gttttttatc taccttattt tggatttagc gctgatactc
     8881 atagacaaag cgggctttta atcccaaaaa tcgttttaaa aagtagcgaa ggcttatact
     8941 atgaacaacc tatttatata gccactcaag aaaattggga tttagaactt gatccacaaa
     9001 ttcgaacaaa ccgtggtttt ggactttatt ctactttaag atttcttgat tctccatatt
     9061 caacaggaga attaaatttt ggtgctttta gggaaaatag ctcctatttt cacgatgaaa
     9121 atttgaaaaa tcaaacccac tatggaatag aactaaaata ctcaagagat gatttaatca
     9181 aatctttact cagtgataat tttcaagaag gtctatggat agatgcaacc tatctcaacg
     9241 atgtggatta tttaaattta ggaagtaggg attatcgaga tcttaactcg cttgtaacct
     9301 ccaaaatcaa ttatttttta gctgatgaaa acaattttta cggagcttat gcaagatatt
     9361 atatcaacac atctaaactt agcaacaata caaccttaca agaatatcca agctttcaat
     9421 atcatagatt tttaaataac ctttttgatg aacgcttgcg ttattcattt gatgcttcat
     9481 ttcataattt ttaccgacct gctggttctt atgcaaatga gctaaattta gacttgccta
     9541 tctcgtatca caacgctttt tttggagact ttttacactt tacttttaca gaaagatttt
     9601 atgcttcttt tgtaaattat agcaacaatc ccgaaagaaa ccatgagcat tatttcagaa
     9661 acactcatga ttttaatctc tacaccgatc tttcaaaagc ttatgaaaat ttctttcata
     9721 ctttaaattt aggggtgaat tacgttttgc caggagcaaa atcaggtaaa atcacgcaag
     9781 attatcttga agaatacgac aaagaaaacg agcatacaag tctttatgct gtgcaatatt
     9841 tctataacaa cgaaggacaa aaaaaactca aacacagaat ttcgcttgac tatctcaata
     9901 aacaaaatga attctatgaa cttgaaaatc ttttaactta ttattttaat gaaaacatca
     9961 atctcaacag cgaagtgctt tactcttatg aacaaagtcg ctttaccaat gtcatcagcc
    10021 aaatagaagt caatacaaat tcaaaattta attggatgtt ttctcatgct tatcaaaacg
    10081 atgagtatgg aaaatatagc tttattggta caagagcaaa ttatattgcc acgcctaatt
    10141 acaatttatt tggtggaatt tggtttgata ctcaaagagc tcatgcaaac atgtgggaac
    10201 ttggctatac ctaccaaaga aaatgttgga actattcttt aatgtataga gaaagaatcg
    10261 atccacaact cacaagtggt ggtatcacag ctaaaaatca aagcggagtt tattttattt
    10321 tcaacttcta tcctttagga ggagtaaaat acgatttctc tttagcagaa agtgaaaaca
    10381 aaatttaaaa aggatgaaat ttgctaaata ttttaaaaaa ttttacgaat ttattatctg
    10441 gtaaaaaagg aaaaataatg caatacagca tagaaattaa caaaaataca gaaatatttg
    10501 atatagacaa agtcgccaaa caagctgccg gtgctgtttt aatgagacaa ggcaaaagcg
    10561 ttgttctagc tacagttgca agagaagaaa aacaagttga agaagatttt ttacctctaa
    10621 ccgtccaata catcgaaaaa gcttatgccg caggaaaaat ccctggtggt tatgtcaaaa
    10681 gagaaaccaa gccaagcgat gcagaaacct taacagcacg cattattgat agaagcttac
    10741 gccctctttt tccaaaaggc tatgcttatc cgactcaaat cgttgtgatg gttctctcag
    10801 ctgatcctaa agtagatttg caagtaatga gcttaaatgc cgcaagcgtg gcactttatc
    10861 ttagtgatat acctatgaaa gctccagtat gtggtgtgcg tataggaaag atagatggaa
    10921 atttcatact caatccaaac aatgaagagc ttcaaaatag caccctagat ctctatgtag
    10981 caggtgtaaa agatgagctt ttgatgatag aaatgagagc cttacctgat caaaaagaaa
    11041 atgaaatctt tatcgaatct ccttatgctg atgttttaac tcaaaccact tcacaaaata
    11101 tgaatgaact tagcgaagat gaaattttag aagctctaaa tttagctcaa aaagctatat
    11161 taaatggttc aaatgcttat gaagaagcct ttagcaaaca caaaaaaaat tctcaaatcg
    11221 aactaaaaaa tgagattgaa tatcctgaaa ttttagcttt tatagaaaat aatttccaaa
    11281 aacaaatcaa agaagccatc aaccaaatgg caaaaagcga aagagcaagc aaactaaata
    11341 aaatcgctaa agaaatttca aatcttgaaa tcgctaaaga ctggagcgaa gaaagtgtct
    11401 taaatacctt agctaaagtc aaacgcaaac ttattcgtga gcaaatttta aatgaaggca
    11461 aaagagctga tggtagaagt ttaaacgaag tgcgtcctat tagtatagaa accaacatct
    11521 taccaaacgc tcatggttct tgtcttttca ctcgtggaca aactcaagcc ctagtggttg
    11581 caaccttagg cggagaaaac gatgctcaaa tgatagactt gcttacagaa aaaaatccta
    11641 taagcgaacg ctttatggta aattataatt ttccaggttt ttcagtaggc gaagcaagtc
    11701 ctatcaaagc tccaggaaga agagaactag gacatggaaa tttagccaaa agagcacttt
    11761 atccaagtgt ggatgaaaac tatccttatg taatccgctt agtcagtgaa attttagaaa
    11821 gcaatggctc aagttctatg gcaacggttt gtggcggatc tttagcctta aaagcagcag
    11881 gagtgccaag cttaaaactt gttgcaggag tagccatggg gcttatcttt aaagataaca
    11941 agtatgctgt tttaacagat atcatgggac ttgaagatca tgatggggat atggacttca
    12001 aagtagcagg aagcaaagac ggcgttactg ctcttcaaat ggatataaaa ctaggtggaa
    12061 tcgatcaaga aatactaaaa caagctttat accaagccaa agaaggaaga attcacattc
    12121 taaatatcat ggaagaagcc gccaaagaaa tcatagtcaa tgaagaagtt ttacctaaac
    12181 ttgaactttt tagcgttgat ccttcaaaaa tcgttgatat cataggacaa gccggaaaaa
    12241 ccatcaaaga aatcgtagaa aaatttggcg tttctataga cttagatcgc gaaaaaggtg
    12301 aagtaaaaat agcaggtagt caaaacgaac aaatcaaagc cgcaaaagac tacatcataa
    12361 acatcacaag ctctcaaaaa ggaactaaaa aaggccctaa agacaaagat atatcaggct
    12421 ttgaacttgg gcaagaattt caaggtattg ttaaaaaaat cgctcctttt ggagcctttg
    12481 tggaacttaa aaatggtgtt gatggtttat tgcatagttc aaaaagcaag catcttaatt
    12541 taagcgaaaa ccaaagctta aaagttaaaa tcagcgaaat taaaaacgga aaaatttctg
    12601 tggatttgtg tgagtgagcg aatttctaac tcatcctttt gagccttttt ttgacaaaga
    12661 ttctaaaatc ttaattttag gatcttttcc ttcggtaaaa tcaagacaag atggctttta
    12721 ttatcaacac ccaagaaatc gtttttggcc tatactagaa acactttttg atgtaagatt
    12781 agaaaatatc acagaacaac aagccttttt aagaaaaaaa catatcgctc tttgggatgt
    12841 acttcaaagt tgcaagataa aaaattcaga tgataaaact ataagttatg caaaagccaa
    12901 tgatttaagc ccgatccttt ctcaaaccaa aatccaagcc atttttacta ctggacaaag
    12961 tgcttataaa ttttttatta aattccaccc tcgcttaaaa gccatagccc taccctcaac
    13021 ttctcctgca aatttaaatt tttcttttga acagctttta caaaactatg aaataatcaa
    13081 aaaatttaca aaataacaaa ctaagcatta cccccaagta aaacaagaaa aaagctagtt
    13141 aatatctagc ttttgcgtgt tatccttgaa ttcaaattcc actctcttag ctccaaaacc
    13201 tttagcaata gcttctaaag tatccttagc acttttatga attttgcttt ctaaattttg
    13261 gataagattt aaagacaagt ctttaacctc atctttggct tcttttatga gtttgttttt
    13321 atcactttcg ctaaaactaa tccccgtact attgatagaa tcaggcagta aaaaaggtaa
    13381 aaatttagca tttttttcat cataaaattt catatctatg atgctgtgtt tgtatctaca
    13441 ctctggcatg atgatcttat aagcatcgtc ccctaaaggc aaaatatcaa agtttttatc
    13501 ccttaaatca tacaagaaag tgatctcaaa ttcaaaaatc aaagcaatct gtctttcact
    13561 caaagaccat cctaaaagat ttttccaaat tccattaaaa gcgctatctt ttttagtgac
    13621 aatctcttta ctaaaaactt gaaaaacact taattctcct atggatttaa gctgcatgat
    13681 atcgctaaaa ctttgcgtgc ttttttcttc tattttaggg cttttatact gcctaaaaag
    13741 cactacaaac aaaagtacaa gtaaaatcat cactaaaaca aataaaatca tttccatttt
    13801 aaacctttct aaatttataa accttgattt gaaaagatat attttttctc aaacgctaag
    13861 aaaataaaag cattaatgat aaaaatcaaa cacacaaaag taaaaacaaa ttccacacta
    13921 aaatgtgaag ccataagccc tccgccaaaa gctccacaaa aatttcccaa aaattgacaa
    13981 gtttgattaa aaccaaaaat cacacttaaa tttttagcac tcacactttt tttaagcaag
    14041 gcattcacac aaggcaaaag ccctccaagt cctacaccta taagtaaacg cacgaaaata
    14101 agcgtataaa cattacttac tacagcctgc aaataaaagc aaattccaca aaatatcaaa
    14161 gctccaaaaa taatcttact aggccctatc ttatcggcga tttttccaag ttttggtgcg
    14221 aaaaaaagat tgctaatccc acttgcagcc actactatac ccgcccaaag agccaaattt
    14281 ccaccttgat gaatttgctc aacatagata cttaaaatcg gcatcactcc aaaagtacca
    14341 aattgtatca caaaagtagt gataaaaaga acgataataa gggttttgtt ttctttcact
    14401 ttttgagtat ttttcttcgc ctctttttga atttttctct catggatgaa aaaataaatc
    14461 gtcacaaaag aacaagcgat caaaaaagcc accatatcaa aaaccgtact aatactaaaa
    14521 aattcagtca caaagccacc aaacaaaggc ccaagcaaac ttccacttat agaagccgta
    14581 gaaagagttc ctaaagcata agcgactttt tctttaggtg ctatcacagc aataaacaca
    14641 acagcagcag aagtaaaacc cgaaattatc cctgttaaac cccgcacaaa aactacttct
    14701 aaagcactat gagcaaagct aagccataag gttaaaaccg acatcccaaa acttgcacga
    14761 agaagcatat ttttataacc atactttgca cccaaaaaag cccacaaagg tgaaaaaaca
    14821 gccataaaaa gtggagtgat cccaaaagca agccctgagt aaaacgctat ttcactcgta
    14881 tcaacatgtc ctagttcttt gatataaaaa ggcaaaatcg gagcgatttg actaagcccc
    14941 atacttgtgg taaaaacacc aaaccaacac acaagcaaag ttctattgaa attttccatg
    15001 gatttattgt atgatatttt ttataatttt taattaaaac tcaaggataa aaatgaaaaa
    15061 aatactcttt atatgcttag gcaatatatg ccgttcgcct atggcagaat ttatcatgaa
    15121 agatcttgtc aaaaaagcaa atttagaaaa agaatttttt ataagcagtg ctggaacttc
    15181 aggagaacac gatggagaag gtatgcacta tggcaccaaa aacaaacttg ctcaacttaa
    15241 catagaacac aaaaacttca caagcaaaaa actcactcaa aagctttgcg atgaaagcga
    15301 ttttttaatc accatggaca attctaactt caaaaatgtt ttaaaaaact tcaccaacac
    15361 ccaaaacaaa gttttaaaaa tcactgattt tagtcctagt ctaaactacg atgaagtccc
    15421 tgatccttgg tatagcggga attttgatga aacttataaa attttatccc tagcttgtaa
    15481 aaatttactt gtttttttat caaaataatt taaaacaact atatattact tctcgtttac
    15541 tttttaggct tatacttcta aacgaaccga aaaacattca taagaaaaac tccttaaaat
    15601 tacacgccta gcttaaatcc ctttagctag gcttttcttt agatgttttt atccttcgga
    15661 tttaaaattt ttactatttt aagtgcttct taagaaaaaa ctccaaattt atgtgctaca
    15721 attacaatgt tttattaatt tttgacaagg agaattctca tgaaactagt taaacttagt
    15781 ttagttgcag ctcttgctgc aggtgctttt tcagcagcta acgctactcc acttgaagaa
    15841 gcgatcaaag atgttgatgt atcaggtgta ttaagataca gatacgatac aggtaatttt
    15901 gataaaaatt tcgttaacaa ctcaaattta aacaacaaca aacaagatca caaatataga
    15961 gcacaagtta acttcagtgc tgctatagct gataacttca aagctttcat tcagtttgac
    16021 tacaacgctg ttgatggtgg cactggtgtt aataacgtaa aaaatgccga aaaaggactt
    16081 tttgttcgtc aattatactt aacttataca aatgaagatg ttgctacaag tgtaatcgct
    16141 ggtaaacaac aattaaacct tatctggacg gataacgcta ttgatggttt agttggcaca
    16201 ggtgttaaag tagtaaataa cagcatcgat ggtttaactc tagctgcttt tgctgcagat
    16261 agcttcatgg ctgcagagca aggtgcagat ttattaggac atagtaatat ttcaacaaca
    16321 tcaaatcaag ctccttttaa agtagattca gtaggaaatc tttacggtgc tgctgctgta
    16381 ggttcttatg atcttgctgg tggacaattc aacccacaat tatggttagc ttactgggat
    16441 caagtagcat tcttctatgc tgtagatgca gcttatagta caactatctt tgatggaatc
    16501 aactggacac ttgaaggtgc ttacttagga aatagccttg atagcgaact tgatgataaa
    16561 acacacgcta atggcaattt atttgcttta aaaggtagca ttgaagtaaa tggttgggat
    16621 gctagccttg gtggtttata ctacggtgat aaagaaaaag cttctacagt tgtaatcgaa
    16681 gatcaaggta atcttggttc tttacttgca ggtgaggaaa ttttctatac tactggttca
    16741 agactaaatg gtgatactgg tagaaatatc ttcggttatg taactggtgg atatactttc
    16801 aacgaaacag ttcgcgttgg tgctgacttc gtatatggtg gaacaaaaac agaagctgct
    16861 aatcatttag gtggtggtaa aaaacttgaa gctgttgcaa gagtagatta caaatactct
    16921 ccaaaactta acttctcagc attctattct tatgtgaacc tagatcaagg tgtaaacact
    16981 aatgaaagtg ctgatcatag cactgtaaga cttcaagctc tttacaaatt ctaagaagct
    17041 ttcaagtcta acttcaaggc ggagttttgc tccgcctttt tttatgcctg atttttaaaa
    17101 cttaaattta tataaaaaat tttcccaagc taaaacgctt taggaaaatt aagacttaaa
    17161 ccaattagtg attttttcaa aaagcccttt ttgctcttga tgcataccat ctttgatgcc
    17221 aaaactttca cttagttttt ctaaaagttc tttttgttca tcgtttaaag aagttgggaa
    17281 tttgatagaa atttgaacga tttgatttcc catgcgagaa ctatgaacat cttttacccc
    17341 ttctttttca agaacaaatc tttgtccatc tttagcaccc tttggtaaat ttaaagtcgc
    17401 ttcaccgcgt atggtgggta cttttatact ttgtcctaag atagcctggg taaaaaacac
    17461 tggaaattct atatatatat catcatcatc tctgataaaa gtatcatctt cagcggcgat
    17521 gatcttaaca tacatatccc ctctagtacc attttttaag atattgcctt tagcattgac
    17581 acgaagcttc atacctgtat ctacaccttc tgggatatta agctcgacac tatctttgct
    17641 ttcattataa cccaaacctt tacaatcact acatttttca ctagcttttt ctccaattcc
    17701 ttgacaatca gggcaagttt gtgcaaaagt gataaaacct tgagaaaccc caatctgtcc
    17761 tctaccttga cactttggac aagtttgaag ctttccatct ttagcccctg ttccattaca
    17821 agttttacaa gagcatttat aagtaaagtc tatatttttc ttacaaccaa aaaccgcttc
    17881 tttaaaactt aattttaaat taacgataaa atctgaaggg attttctcat catttgaact
    17941 ttttctacga cgcgatgagc caaagccttc tccaaaaaaa ctagaaaata tatctcctaa
    18001 atcctcaaaa ccaccaaaac ctgagctatt agaaccaaat ccaccgcctt ttaaagcatc
    18061 ttttccgtat ctatcataaa tagctcgctt ttcatcattg cttaaaactt cataggcttc
    18121 attaacaagc ttgaatttat cttctgcttc tttatcacct tggtttctat caggatgata
    18181 ttttaaagcc atttttctat aggctttttt tatggtttct ttatcagcat tttgcgtgat
    18241 ttcaagaatt tcat
//
LOCUS       DARBBO010000026        17861 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.026, whole genome shotgun sequence.
ACCESSION   DARBBO010000026 DARBBO010000000
VERSION     DARBBO010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17861
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.026"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            94..297
                     /locus_tag="SB854_000706"
     CDS             94..297
                     /locus_tag="SB854_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956733.1"
                     /translation="MLLNTPCRGIVDTNFESKRISITSTLKFQEKKEKVEAKAEKEEA
                     NKDNSNSTNTNTNKKDKLLDISA"
     gene            649..2739
                     /locus_tag="SB854_000707"
     CDS             649..2739
                     /locus_tag="SB854_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family iron permease"
                     /protein_id="HEG0956734.1"
                     /translation="MKIFKIIFLIIGIFLSSSAFARVDDYINEANLIKDMLKQSIETY
                     KKGDNLGAKKLSEDAYFQHFENMEGPIGRNIGRKAITMERKFVNLRRMYKDEAPLTQI
                     NALIDSLYYDLDEVAPILQNGYRLKAEASDINYDKAKAEKSSLEANAKREADAEALIA
                     QMMGVDKKDLAQSSLTTQAPIPVNNDTSKLTDDNASADLQAAAAMDARLQFILDNIST
                     KFSQAANAFKEKNYQTSKDFLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLI
                     RQINDAKIDEKGLRDGLDNIEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSN
                     DIKLALDGILKNYDGFSASIVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSK
                     GVALIKASADKKELEATFNDLEQLIASSVDKIQDSTPYSLFIWALGIILREGLEALII
                     VVAIVSYLVQSGNKNRLNIAYSALFTGVILSFVTAFGVSWLFKENAGQSRELIEGITM
                     LIAVLLLFYVGFWLLSNAQNKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAET
                     VLFYQALLFDAKTSTDFGAVFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYII
                     FYMVFVFTGKGIAELIEGKVIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLIMLIIG
                     ILITKQISKKGVKS"
     gene            2736..3275
                     /locus_tag="SB854_000708"
     CDS             2736..3275
                     /locus_tag="SB854_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HEG0956735.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            3358..4761
                     /locus_tag="SB854_000709"
     CDS             3358..4761
                     /locus_tag="SB854_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2318 domain-containing protein"
                     /protein_id="HEG0956736.1"
                     /translation="MSTYFVHFLISVLPLSILMAFITPNKKYIFKSFFVVFLGFLFGY
                     FAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHY
                     YFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLL
                     ILIESDKALANILLTLMRNSIIETHAFLVSFVGKSNYFGVFGIYVYLIFITFLAFLSL
                     KIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVVSFCIVLYFFMVSSKPLTI
                     DEPKEILPDKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDKDSPVAVFD
                     ACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDV
                     IAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYSYKGVTYYFSNQNNYEEFKKDPTKY
                     VEENEAQFLIQRRNDVG"
     gene            4748..6040
                     /locus_tag="SB854_000710"
     CDS             4748..6040
                     /locus_tag="SB854_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0956737.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGAYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSTEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFASENLIVALFAALLGFIFGTALSQIISLSIFGYFIDIA
                     FVALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            6030..7148
                     /locus_tag="SB854_000711"
     CDS             6030..7148
                     /locus_tag="SB854_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEG0956738.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDIKLSKELKAYGANVMISPKQDENFISNTEYEKIKENLKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKAGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAISNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            7145..7798
                     /locus_tag="SB854_000712"
     CDS             7145..7798
                     /locus_tag="SB854_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0956739.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            7795..8283
                     /locus_tag="SB854_000713"
     CDS             7795..8283
                     /locus_tag="SB854_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG0956740.1"
                     /translation="MKKSLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            8244..8747
                     /gene="traF"
                     /locus_tag="SB854_000714"
     CDS             8244..8747
                     /gene="traF"
                     /locus_tag="SB854_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraF"
                     /protein_id="HEG0956741.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFALVFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(8757..9194)
                     /locus_tag="SB854_000715"
     CDS             complement(8757..9194)
                     /locus_tag="SB854_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HEG0956742.1"
                     /translation="MKKTILTILFLLTLTQAKEIQIYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIAWLLENKPKDVIGI
                     SAPGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
     gene            complement(9493..9909)
                     /locus_tag="SB854_000716"
                     /pseudo
     CDS             complement(9493..9909)
                     /locus_tag="SB854_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(10084..10168)
                     /locus_tag="SB854_000717"
     tRNA            complement(10084..10168)
                     /locus_tag="SB854_000717"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10132..10134),aa:Leu,seq:tag)
     gene            complement(10173..10249)
                     /locus_tag="SB854_000718"
     tRNA            complement(10173..10249)
                     /locus_tag="SB854_000718"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10213..10215),aa:Arg,seq:tct)
     gene            complement(10264..10340)
                     /locus_tag="SB854_000719"
     tRNA            complement(10264..10340)
                     /locus_tag="SB854_000719"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10304..10306),aa:Arg,seq:tcg)
     gene            complement(10344..10420)
                     /locus_tag="SB854_000720"
     tRNA            complement(10344..10420)
                     /locus_tag="SB854_000720"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10384..10386),aa:His,seq:gtg)
     gene            complement(10445..10522)
                     /locus_tag="SB854_000721"
     tRNA            complement(10445..10522)
                     /locus_tag="SB854_000721"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10485..10487),aa:Pro,seq:tgg)
     gene            complement(10565..11413)
                     /locus_tag="SB854_000722"
     CDS             complement(10565..11413)
                     /locus_tag="SB854_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HEG0956743.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNAYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFAIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFQISTCTLKNRLAVLEEYLQKYPSAYIKIISQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNATKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDEDRKNPPKIGSIVTYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            complement(11413..12075)
                     /gene="cgpA"
                     /locus_tag="SB854_000723"
     CDS             complement(11413..12075)
                     /gene="cgpA"
                     /locus_tag="SB854_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HEG0956744.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDVSVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSKMISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            complement(12065..12268)
                     /locus_tag="SB854_000724"
     CDS             complement(12065..12268)
                     /locus_tag="SB854_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956745.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDTLLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            complement(12334..13578)
                     /gene="eno"
                     /locus_tag="SB854_000725"
     CDS             complement(12334..13578)
                     /gene="eno"
                     /locus_tag="SB854_000725"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEG0956746.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEALIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIEFESDEYLGEKL"
     gene            complement(13578..14609)
                     /gene="recA"
                     /locus_tag="SB854_000726"
     CDS             complement(13578..14609)
                     /gene="recA"
                     /locus_tag="SB854_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEG0956747.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            14715..15575
                     /locus_tag="SB854_000727"
     CDS             14715..15575
                     /locus_tag="SB854_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HEG0956748.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENAVLSGEVDAGVLIHESILNFDQSLYVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDFLI
                     PSEYEEARNS"
     gene            15587..15856
                     /gene="fliQ"
                     /locus_tag="SB854_000728"
     CDS             15587..15856
                     /gene="fliQ"
                     /locus_tag="SB854_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HEG0956749.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            15853..16629
                     /locus_tag="SB854_000729"
     CDS             15853..16629
                     /locus_tag="SB854_000729"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEG0956750.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLVSPK
                     PKNIGILGDGFNFIQILDRNKDFIHLRIGCKTKSSKMYRFAKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRANINFDYRFCPLNTHFFWAEFKLNFG
                     FDTLKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGTNLENEVIII"
     gene            16821..17471
                     /locus_tag="SB854_000730"
     CDS             16821..17471
                     /locus_tag="SB854_000730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956751.1"
                     /translation="MKNITLTKIPIGEGKEPCLNSKKIVLSLATISFLASCANAKLNS
                     EIKTYDEVNKNVKTRSASVYSPQAKINTTINSLHNQQVTITGNGTSNSLTIGSSGTLG
                     SIGNTGKIIYAHANGSNTLTLANLTNNRTINGKIGIENNGNFTGTIAVNTFENTGQIN
                     GQIYMGIWGNNSGTLNIDKFDNSGTIIDNNKGVFLKERIPTYKPLITVVLLVQIRV"
     gene            17534..>17861
                     /locus_tag="SB854_000731"
     CDS             17534..>17861
                     /locus_tag="SB854_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956752.1"
                     /translation="MGVAINTKIDTFTNNGFINSPGSGQWNNGIWISSNATIEKLVNN
                     GTIKGGHSAIMVTSQHIKTVENTGIIHAEGEWGSSILLEYGGFIEHIINTGTISSNNV
                     GIGSAYG"
BASE COUNT         6152 a         2842 c         2795 g         6072 t
ORIGIN      
        1 atttatttca ataaatttaa gttttatctt attttataca attttaatat aatctaaaat
       61 tataatttta aatgagaaat caggagcttg ctaatgttac ttaacacgcc ttgcaggggg
      121 atagtagata caaattttga aagcaaaaga attagcataa cttcaacttt aaaatttcaa
      181 gaaaaaaaag aaaaagtaga agctaaggct gagaaagaag aagcaaataa agacaatagc
      241 aattctacaa acacaaatac caataaaaaa gataaacttt tggatatatc tgcttagtct
      301 aaaatatact atagctatat ctccttaaag aatacgcaat aaatgatttt ttgattttta
      361 ttaagctttt aaaacatcga aaaaaggaaa aattaaaaaa cacaaaaaca atatcccaaa
      421 atccatagct tagaagaaga ccttgcgata cttaaaaaca acccatatta aatcacaaaa
      481 ataaaatata tttaaatatt tattaaaata cattttataa tttaataaaa aaatattatc
      541 aacataaaag cttatttttt agttctattt aagattttta gtattatact agccattatt
      601 tattttgata ataaatatta tttttatcaa aaatcaaggg taatgataat gaaaattttt
      661 aaaattatat ttttaattat aggtattttt ttatcaagct cagcttttgc tagggtagat
      721 gattatatta atgaagcaaa tcttatcaaa gatatgctaa aacaaagcat agaaacttat
      781 aaaaagggcg ataatctagg cgccaaaaag cttagcgaag atgcgtattt tcaacatttt
      841 gaaaatatgg aaggcccaat aggaagaaac ataggaagaa aagctatcac tatggaacgt
      901 aaatttgtaa atttgcgtcg catgtataaa gatgaagctc ctttaacaca aattaatgct
      961 ttaattgata gtctttatta tgatcttgat gaagtagctc cgattttaca aaatggatat
     1021 cgtttaaaag cagaagcaag cgatataaac tatgataagg ctaaagctga aaaatcaagc
     1081 ctagaagcca atgccaaacg cgaagctgat gcagaagctt taatcgcaca aatgatgggt
     1141 gtagataaaa aagatttagc acaaagctct ttaaccaccc aagctcctat acctgtaaat
     1201 aatgatacaa gcaaacttac agatgataat gcaagcgctg atttacaagc tgccgctgca
     1261 atggacgcaa gattgcaatt tatactagat aatatctcta ccaaattttc acaggcagct
     1321 aatgctttta aagaaaaaaa ctaccaaact agtaaagatt ttttaaatga tgccttattt
     1381 agtgattatc gcaataccaa agtagaaatt ttagtaaata aatttaccaa agcaggaaac
     1441 gatcaaaaaa ttcaacaagc catacgcacc cttatacgcc aaatcaacga tgcaaaaata
     1501 gatgaaaaag gcttaagaga tggcttagat aacatagaag aacaaatttt tgatgttttc
     1561 ttacaaattc caaattcaga actttcaagt ttgcaaattt caggctttaa tgatgaaaca
     1621 aaaggcaaag attatgccaa agtttctaat gatatcaaac ttgctttaga tggaatttta
     1681 aaaaattatg atggctttag tgcttctata gtagatgatt tacaaggaat ttatctagat
     1741 atttttgaag caagcggtat ggaaaataaa atcggtgctg tagatagcgg cttaaaactt
     1801 aaaatagaaa gtttattttc caaaggcgtg gcactgatta aagcaagtgc agataaaaaa
     1861 gagcttgaag ctacttttaa tgacttagaa caactcatag ccagcagtgt ggataaaatt
     1921 caagattcta ctccttattc gctgtttata tgggctttag gtattatttt gcgtgaaggc
     1981 ttggaagctt tgattatcgt tgtagccatt gtttcttatc ttgtgcaaag tggcaacaaa
     2041 aatcgtttaa atatcgccta tagtgctctt tttacaggag taattttaag ttttgttacc
     2101 gcttttggag tttcttggct atttaaagaa aatgcaggac aaagtagaga gcttatagag
     2161 ggtattacca tgcttatagc cgtattacta ctcttttatg tgggcttttg gctactttca
     2221 aacgcacaaa ataaaaaatg gacaagcttt atcaaacaag gtgctataga tgctatatca
     2281 aacaatagtg caaaaaccct ttggattacc gtatttttag ctgtttatag agaaggtgca
     2341 gaaactgtgc ttttttatca agccttgctt tttgatgcta aaacaagcac tgattttggt
     2401 gctgtttttg gcggacttgg acttggaatt ttaatactta ttgttttata ttttctttta
     2461 aaagcaggag ccattcgcat acctgtaaaa caatttttct atatcacttc ttacattatt
     2521 ttttacatgg tttttgtttt tacaggcaaa ggcatagccg aactcataga aggaaaagtc
     2581 atcattccta gtcttatacc tatgaatttt gaaccgattt tatggcttgg aatttatcct
     2641 tactatgaaa ctttaatccc tcaatttata gttttaatta tgctaattat tggcatttta
     2701 ataacaaaac aaatttcaaa aaaaggagta aaatcatgat aaaaaaagtt ttatcagtag
     2761 ttgctgcagc tgcggttatt agtacaaatt tatttgcagg cgaagtgccg atcggcgatc
     2821 caaaagaact taatggcatg gaaatagccg ctgtttattt acaacctatt gaaatggagc
     2881 caagaggtat tgatttagct gcatctttag cagatattca cctagaagct gacattcacg
     2941 cacttaaaaa caatccaaat ggttttccag aaggtttttg gatgccttat ttaactatag
     3001 cttatgaact taaaaatacc gacacaggtg caattaaacg tggaactttg atgcctatgg
     3061 tggctgatga tggtcctcac tatggtgcaa atattgctat ggaaaaagat aaaaaaggtg
     3121 gctttggcgt aggaaattat gaacttactt tttatatctc aaatccagaa aaacaaggtt
     3181 ttggacgcca tgttgatgaa gaaacaggtg tgggtaagtg gtttgaacct tttaaagtag
     3241 attataaatt caaatacaca ggcacgccaa aataatttta cgctcggatt ttccgagtgt
     3301 ttgaatattt ttatttttat ttgaaaaatt aaaataacaa tgtttaaaga gtaaattatg
     3361 agtacatatt ttgtgcattt tcttatcagt gttttaccgc taagtatttt aatggccttt
     3421 atcactccta ataaaaaata tatttttaaa agttttttcg tagttttttt gggcttttta
     3481 tttggatatt ttgctttttt tatcgcagca caatttttaa aaaccgaaaa tttaatcttt
     3541 aattttgatt ttgtttttat aggtttattg ctagtaagct ttatatttta tttttggaaa
     3601 aaaattgaaa ttttaaattt tattttattg ggaattttaa gtttttgcac cgctttgcat
     3661 tattattttt taagtcaaga tttccctatt tttactagct ctttaatcga tagcgaaggt
     3721 ataagttctt taggttttat tgctttagcc ttgcttgttt gtattttgat tttcttcttt
     3781 ttaaaatggc aaaaaaattt taatcaaaaa acaagcttta tgctgttttt actgcttatc
     3841 cttatagaaa gcgataaagc tctagccaat atcttgctta ctttaatgcg aaattccatc
     3901 atagaaactc atgctttttt ggtgagtttt gtaggaaaaa gtaattattt tggtgttttt
     3961 ggaatttatg tttatttaat tttcatcact tttttagcat tcttaagctt aaaaattcgc
     4021 aaaaaaaata taagcaaaaa acaaatttta gatataaatt atcgcaaaaa cgaagctaaa
     4081 acaagtctta ttaatcgcta tttttccagt gtttttatct cctgtgttgt aagtttttgc
     4141 attgttttat acttttttat ggtaagctct aagcctttaa ccatagatga gcctaaagaa
     4201 attttacccg ataagaatgg caaatttatc tttgatatag ctcttttaag ggacaacaaa
     4261 ctccaccgct ttgcttatat cagtgctgaa ggcaaagtga taaggttttt tcttatcaac
     4321 aaaagagaag ataaggattc tcctgtagct gtttttgatg cttgtatgat ttgtggagat
     4381 atgggctata tcaaaaaaga tggacaactc atttgcattt cttgcaatgt gcgtattttc
     4441 ttgccaagtg taggtaaaag cgggggttgc aatcctatcc cactcaaata cgaatacgat
     4501 ggtaaaaaaa tcaccataga tgttaaagat gtaatagcag gatctaatta ttttagtcaa
     4561 atcaaagaaa ttgaagtgca agatcctgta tcaaaaacaa aggttataaa cacccaagct
     4621 cctttttctt atagctataa aggggttact tattattttt caaatcaaaa caactatgaa
     4681 gaatttaaaa aagatcctac aaaatatgta gaagaaaacg aagcccaatt tttaatccaa
     4741 aggagaaatg atgttggcta aaatgatttt taactctata tttaaaaaca aaattcaaaa
     4801 atttttagcc tttcttactt gttttttagc cacgcttttg ctctctacta tgctaaatat
     4861 taccctaagt ataggtgatg aagtaactaa acaactcaaa agctatggct ctaatatcct
     4921 tgttttaccc aaaggctcaa gccttagtat agaaataggt aatgaacttt atgaaccctt
     4981 aaaaaacaaa aactacctag aagaaaaaaa tttatatatg attaaagaca tttattggcg
     5041 taacaacatc accgcacttg ctcctttttt ggaaggtaaa atcacaattg aaaactccca
     5101 gcaaaaagca cttatttatg gtgcttattt tcaaaaagcc ataaaaatta aagatgatga
     5161 tgattttatc acaggtataa aaagtcttta tccttattta gcagtgcaag gagaatgggc
     5221 aaaagatgat agcaatgaaa tcatgctagg cgaagacttt gctaaaaaca ataaactaaa
     5281 attaggagat actatcaaac tcataggaga aaacaatcaa agcaaagaag caaaaatcgt
     5341 aggcatttta cttcatgcca atcctaaaat gtcaaataaa atcatcgctc ctttaaattt
     5401 agctcaagat ttactcaaca aacaagggct ttactcaagt acagaagtaa gagcttttac
     5461 catacctgaa tcagcccttt ctgaaaaagt acgtcgcatg ggcgaagaaa aattagatca
     5521 gttagaatat gacaaatggt attgctcagc ttatgtaggc tcaatcgcta gtcaaattag
     5581 cgatggcttg ccaggtgctg atgcaaaagc tctaaatgct ataagcgatg ctcaaagctt
     5641 ggtggttaaa aagatccaat ccttaatggg cattacttgc attatttgtc ttattgttgc
     5701 aagtattgcg atttcaagtc taatgagttc tgaaattcat cgtagaaaaa aagaaatagg
     5761 acttttaaaa gtacttggtg ctaatacttt tcaaatttac ctcatctttg ctagtgaaaa
     5821 tttaatcgta gctttatttg ctgctttact tggatttatt tttggcacag cactttctca
     5881 aatcatcagt cttagtattt ttggatattt tattgatata gcctttgtag ctttaccttt
     5941 aagctttatt tttgcaggac ttattgcctt acttggttgc ttgcttccta tcaaaaatat
     6001 cacacaactt tcagctgcag gagtgcttta tggtagataa gtttttcctc aatgagcttt
     6061 ttaaaagcat tagcttttct tatcaaagac tttttattat agttttaagt gtttttatag
     6121 gagcacttac ttgctcagct tttttaaata tttattttga tatcgacatc aaactttcta
     6181 aagaattaaa agcttatgga gcaaatgtaa tgataagtcc caagcaggat gaaaatttta
     6241 tctccaatac tgagtatgaa aaaataaaag aaaatttaaa ggctagagct ttaactcctt
     6301 ttttgtatga ttttttaaat ttaggcagta caagcggggt ggttttaggc actgatttta
     6361 gggctttaaa aatcactaaa ccttttttag aagttaaaga aggaagcttt tctctaaatg
     6421 attttgatga aaattcagcc tttttaggag ttaatttagc caagcaacta ggcctaaaag
     6481 caggcaatga acttcaaatt tataatccaa acaacggaaa aagcataaaa cttaccataa
     6541 aaggcatact ttcaagcaat gatgaatttg atagcattgt tttagcccct ttaagcgtgg
     6601 tgcaaaattt aagcgataga gccggtatta actatgctaa tgctgtagtt tatggaaatt
     6661 ttgatgaagt taaagccaaa acacaagcaa tcagcaatga attcatcgat gcaaaaccta
     6721 tatcttcagt atccttaagt gaaggtttag tgcttggaaa aatcaaagct ttaatgtttt
     6781 taatcatact tgtggtattg atcatagtta ctactagcgt taatacaact ttaagttcta
     6841 ttatattttc tcgcaaaaaa gaaatcgcac tgcgtttagc cttgggtgcg aaaaaaagtg
     6901 aaatttttaa actttttgct agtgaatgct ttatagtaag tttttttgct agtttaatcg
     6961 gagctttttg tgggatattt ttagccaatg tctttggtta tttaattttt aattctagta
     7021 ttgattttag atttatagct gtttttatag ccttaatcat ttctttgatt tttgcctttt
     7081 tggctgcatt ttttcctata aaaagagcat taaaaatcaa tgtgtgtgaa aatttgaaag
     7141 gtgaatgatg aaaaaagaac ttattaaaat aaacaattta aataaagaat ttggcaaagt
     7201 taaagcctta aacaatatca acttaagcgt ctatgaagga gaatggcttg ccatcatggg
     7261 tccatcagga agtggaaaat caacactttt aaacatacta tcgctcatgg atactccaag
     7321 ctctggagag tatatcttgg ataatgaaaa cctagagcaa atggatgaag agcaaaaaat
     7381 caccttgcgt cgtgaaaaaa tagggcttgt ctttcaacaa tttcatctta tcccctatct
     7441 taacgcctta gaaaatgtta tgctctctca gtattatcac tcaagtgtag atgaagaaga
     7501 tgccaaaatg gttcttgaaa aagtaggact ttcgcataga ctcactcatt tacctagcca
     7561 attaagtggc ggagaacaac aaagagtttg tatagcaaga gctttaatca acaacccaga
     7621 gcttttactc gcagatgaac ccacaggaaa tttagatgaa gccaatgaac aaatcgttct
     7681 tcaaaccttg caaaaattaa aaaatgaagg taaaaccata gttttaatca cacacaatcc
     7741 tgatttagcc aaattcgcag atcgaaccct tatcttacaa catggggtgt taaaatgaaa
     7801 aaaagccttt taatcttaag cattttgttt ttactcaatg cttgttcttt tgaaaattca
     7861 aaagatactg gaaaagttgg agaaaaaagc gctgaaattt cagctaaaga tactttagga
     7921 aaagctgtaa aacttgctga tgataataca agtttaaaag tcttagtctt ttttcaaaat
     7981 ggctgccctt cttgcttaaa agaactccct tctttagatg aattcataca aaatcacccc
     8041 aataaaatca gtgtttatgc tataaattcc atcgataatg ccaatgtggt taaggtttta
     8101 gccgaacaat ttgactttaa aaatgtaaaa gttttaaaag acgatcttaa aatcaccaat
     8161 gatcgttacg ctgtgtttgc aacccctact accatcatca ttaaagatgg gatgataaaa
     8221 gatagaattt taggagaaaa accatgggaa tttttcgaat ccaagcttat ttctttgctt
     8281 taatcatagc tttatttttt gtagcttgtg atagtggaga aaattttaaa gctttaaata
     8341 gcgataaaac ctataatttt gcctacaatg gttttgaaaa aagcctaaaa ctaaatgata
     8401 aagcacaaaa ttttgcctta gtatttttca caaaagattg cggagtttgc aaagaacaaa
     8461 ttcctatttt acagaatttg gctaaaaatt atgattttaa tatctttgtg gttttaggcg
     8521 atgcaaacga tgcaaacgat gcaaaagctt gggctgatga aaaaggttta tctaatttag
     8581 caatgtttta tgaaaaaaga gcagctaaat acctttcaag tgccattggg gaaatatatg
     8641 gagtacctgt gcttagtttt ttcaaagaag gaaaaatgga tgaaaaattc ataggcttaa
     8701 ctccttatag catacttgaa aaagaaatca aaaaagtaaa aagctaaaaa tttactttaa
     8761 agctttttat cccctataaa atatccataa agctcatagc ttccatcttt tttcatcaaa
     8821 attacaggat atttttcact ataaccttgt tccattcctg gacttccttg cggcatgcca
     8881 ggagctgaaa ttcctataac atctttaggt ttgttttcaa gcaaccatgc tatagcactt
     8941 tcaggaacat gcccttcaat agcatagcct tcaatcacac ctgtatggca actttgatac
     9001 tcatctttta tacccatttt ttctttgatt ttaagaaaat cattggtttt atgaacacta
     9061 acctcataac ccttagcttt catataatca gcccaaagat cacaacagcc acaagtagga
     9121 ctttcataaa tttgtatttc cttagcctgc gtaagagtga gtaaaaaaag aatggttaaa
     9181 attgtttttt tcataattgc tatcctaagt aaaaaatata taataatact tttataaagt
     9241 taatatcatc acatttttaa cactaaaaat gaatttacaa aaatttaatc aagaaaagac
     9301 ttttaatgag tgttgatttt gtctttgcag caaagatata aaagataaaa cgatttaaaa
     9361 aactagaaat ttttaactta aaaagcttaa aatttagata tattttatac ttactatgtt
     9421 ttttcatagt atgttctaat ggtggatttc cgccaagagt gaaaactcaa ggcggatttt
     9481 tatttgcaat atttacttaa tagaataatt atgatcagct gtgcctccac ataaataccc
     9541 cttcttatca aaacttgcaa tttcgcaaga aagagtagat aatctagctc ttttaccatc
     9601 actagttaat ataagaactt gtttataata aacataattg cttttatctg aatattcttt
     9661 ttgtattata gcttgagttg aattataagt tcttggatca acttttgcaa caatatctgc
     9721 ttcataaaaa gttgcctttt taaaaagtgg ctcagttaaa gttgatttta tactctcttg
     9781 gaaatatttg ttttacattt cgcttgctga aactggaact aaatcttttt tattgataac
     9841 tatcaaatct gcaaatgctg acacatttaa agcaactaaa actgctaaaa ctaaacctaa
     9901 ttttttcatt ttatctcctt gaattgaatt ttgtatattt gaattatttt tcaaatcttt
     9961 tgcaagataa tttttaaatt tatctaaatt aaatttgcat tttatctaac aatcataaga
    10021 aattttaaaa tgaaataaaa atttatgaga aatcaactct tatttgaaaa tgataaaagt
    10081 aagtggtgcg gatgaaagga cttgaacctt cacgcattgc tgcaccagat cctaagtctg
    10141 gcgtgtctgc caatttcacc acatccgcaa agtggtacgc ccaagaggat tcgaacctct
    10201 gacctacggc ttagaaggcc gttgctctat ccagctgagc tatgaacgca tataaaatct
    10261 tggtggtgcg cccgatagga atcgaaccca taacctacag atccgaagtc tgtcgctcta
    10321 tccagttgag ctacgagcgc tagtggggtg agtgatggga attgaaccca cgaccctcag
    10381 gaccacaatc tgatgctcta accgactgag ctacactcac cattttgtat aaatttataa
    10441 aaaatggtcg gggtgaaagg attcgaacct tcggcccctt ggtcccaaac caagtgcgct
    10501 aaccagactg cgctacaccc cgaataaata aaaggaaata ttttatcaca aaataatttt
    10561 aaagtcaagg attttcatct cttattctta aaaacaccgg aaagcgaggt aaggaatttt
    10621 tggtcaatcc attaaattta taagtcacaa tactaccaat ttttggagga ttttttctat
    10681 cttcatcttt taaaccactg cctattttaa tgatttgtcc attaggcatt ttacaaagta
    10741 aggcacctac ttgattttca aatttaccct tgcccttgcg aaatcctacc aactcacatt
    10801 ctgcatcatc atagggtttt aatttcgtgg catttttact tctgcctttt tcataaggac
    10861 ttaaattttt gcgtataaca ataccttcac cttgattttt tataatgctt tcgtaaaatt
    10921 gatttaaatt attttgattt tcaactggaa tttgagaaat aatttttata taggcactag
    10981 gatatttttg caaatactct tctaaaacag ccaaacgatt tttaagagtg caagtagaaa
    11041 tttgaaattc ttcgcaagca tttggtacat caaaaatatt ataagttact tccttccata
    11101 aggtcaaatt gctatcgcca ctacgaatta aagctgaaat ttcatcaaat ttatttcttg
    11161 ctatccaaag ctcaccatca atagcaaaag gagggaaatt ttttgtaaaa aagtcaggag
    11221 tttttatttt gtagttttgg cgagttttta gatatttccc atcccaaatt ccacgcactc
    11281 catcaagttt ttcgctcatc aaataagcat taaaatcttt agagttaaaa tcttgcttat
    11341 cgaatttgct aagaagtaaa atttcattag caaaaactaa acaagcacaa catattaaaa
    11401 aaacaaacct catcaaagca gattaatcat atatccagtt gcatcttttt gaatattata
    11461 attataagtt ccatcaagat atattacaag tcgataatat cctttatgag atccaaagtc
    11521 tatgcgttta aaaatagaat tgctaaggcg tatgtttttt gtagggctaa tcattttaga
    11581 tctaaaatct ataacgattt tacttggatt tcctactgaa aaatctgtaa tcatttcatc
    11641 actagtgtta agttttattt tatttttata aaccgcataa gaaataaaat cataaatctt
    11701 tgcaacctgt aaaggtattt caacattggc tgttgagttt gattcttgtt tagagctatt
    11761 tttttcaggt atagtaactg aaacatcaag tacttttgaa ggatcagggc ttttaaatct
    11821 tgatatagta taagtatcgt gccaatcaat acttttattg acatctaaat cgatcttatc
    11881 ttcacttccg tctaaattga tataattaaa agtgatgctt tttaaaattc ttgcactaga
    11941 attaaattta acttcctctt tttgaaattc aggtggagca accaaggtta tattttgatc
    12001 tgtcttgaaa ggattttcat cagcatataa aagagaggta aaaataaaaa atattgccaa
    12061 aattctagtt ttcatttggg tataatcctt ttaattcaaa ataatctttt tgtgctttag
    12121 cattttgttc tttgagcaaa ataatctttt tattaagctc ttctttggta ttttctaagc
    12181 ttaataaagt atctaaagaa tactgcccaa aaaacatatt gccaaaataa atcgctccaa
    12241 ttacaacaag aaaagcccaa aaaatcattt ttataacatg ggtataaaaa cttttttttc
    12301 ttgtgctttc gtcgtattct ttaagtaaat cgctcagagc ttttctccta aatattcatc
    12361 gctttcaaat tcaatttcaa gtaagcgatt gtattttgcg gttctttcgc ctcttgctag
    12421 ggctcctgtt ttaatttgtc ctgtatttaa agccacagca aaatccgcta taaaagcatc
    12481 ttcactttcg ccgcttctat gactcatcac acatttatag ttatttcttt gcgctaaacg
    12541 cacagttctc atagtttggg taatagttcc gatttgattt ggtttgataa gtacagcatt
    12601 tgccattttt ttgatgatac cttctcttaa aatatcttca ttggtcacaa acaaatcatc
    12661 gcctacaagc tgaattttat tgcctaattt ttcagtcagc ttgatccagc cttcaaagtc
    12721 attttcagct aagccatctt cgatactgca aattggatat tttgcacaaa gttctacata
    12781 gcgttcgatc aaagcctcgc ttgaaaaagc cttgccttcc atgtggtatt taccatcttt
    12841 gaaaaattct gtacttgcca catcaagagc aatttttaca cgattttcat aacctgcttt
    12901 tttgatacaa gtcattaaaa gatcgatagg ttctgtgttg ttagctaaat ttggagcaaa
    12961 accgccttca tcacctaaag ccgtagaatg tccagaattt gcgagttctt tttttaatat
    13021 cgcataaatt tcacaaactg aacgcaaagc ttctttaaag ctagtaaaac caaaaggcat
    13081 gatcataaat tcttgaaaat ctacattgtt gtttgcatga gcaccgccat ttatgatatt
    13141 acacattggc acgggtaaaa tgctcgcatt tgcaccacct aagtagcgat ataaaggcat
    13201 tcccaaagca gctgcagccg cacgagctgt tgccatagat acgcctaaag tcgcatttgc
    13261 acctaaattt gagtaattat ttgttccatc gagctcacgc aaagtatcat caagttgagt
    13321 ttgattaaaa gcatctagtc ctaaaatttc atctgcaatg gtctcattga catttgcaac
    13381 agcttttaaa acgccttttc cgccaaatct ttcatcatta tcacgcaatt ctaaggcttc
    13441 ttttgaacct gtacttgcac cacttggaac tatggccgca cctacacttc catcgcttag
    13501 cgtaacttcg gcttttacgg ttggatttcc tctactatca agaacttcat aggctctaac
    13561 atcttcaatt actaacatta ttcttctcct tcgtcatctt cgctaccgct gatcatacct
    13621 tctattccca tagaattttg aattgctttt gtgatttcat ctgcaatttc agggttttct
    13681 tttaagaaag cttttgaatt ttctctacct tgtccaagtt ttttatcttt ataagaaaac
    13741 cacgcaccac ttttatctac gatatcaagt tttacaccat aatcgatcaa ttcaccttca
    13801 cggcttaaac cctctccaaa catcacatca aattcagctt gtctgaatgg aggagcaact
    13861 ttatttttaa ctacttttac tttaacgcgg tttcctatag gttcttcgtt ttgttttaag
    13921 gttgctactt ttctaacatc taaacgcaca gaagcataaa attttaatgc atttccacct
    13981 gttgtggttt caggagtacc ataacccata gcaccgattt tcatacgaat ttggttgata
    14041 aaaattactg tggtattcat tttatgaact atacctgtaa gttttcttag agcttgagac
    14101 ataagtcttg cttgaagtcc tacatgttga tcgcccatat cgccttcaat ttctgctttt
    14161 ggagtaagtg ctgcaacgct atctactacg ataagatcta ctgcgccact tcttgctata
    14221 gtttctacaa tttctaaggc ttgttctcca aaatcaggct gagaaacata caaatcatct
    14281 gtatttacac ccaaattttt agcatatttt acatcaagcg catgttctgc atcgataaaa
    14341 gcacaaactc cacctgcttt ttggcattct gcgataatat gtaaagttag agtggtttta
    14401 cctgaacttt caggtccata aatttctata attcttcctt ttggaacacc gcctatacct
    14461 aaagcaagat caagcccaac tgaacctgtg cctatgctat cgatttgctc gacttcttta
    14521 tcccctagtc ttaaaatagt gccttttcca aaggttttat ctaaactttt tagggcagcg
    14581 tctagagatt ttcttttatt atcatccata actttcctta aaaattctaa atttttagtt
    14641 agaattctaa caaaataaaa ttaaataatg atttattttg ctagaattaa agcaaagatt
    14701 taaaggaagc atagatgaaa aaaattacta ttgcacattc tcctgatgct gatgatattt
    14761 ttatgtatat ggcaattaaa tttgggtgga tagggaatga ttttgcttat gaaaatacag
    14821 ctttagatat acaaacttta aatgaatttg ccttgaaaaa tgaatttgat gctacggcta
    14881 tttcttttgg gctttatcct ttaatcgctt ctgagtatgc acttttacgc acagcagtga
    14941 gttttggtga aggttatggg ccaaaactca tcaagaaaaa agacacgcat ttaaaaagaa
    15001 attttaaagt cgctttgagt ggagcaaata ccaccaatgc tttgattttt cgcatgaaat
    15061 atcctgaagc aagaattatt tataagaatt ttttagacat tgaaaatgcg gttttaagtg
    15121 gcgaagtaga tgcgggggtt ttgatccatg aaagcatttt aaattttgat caaagtcttt
    15181 acgtggaagc agaactttgg gatatatggc ttgaatttgc taaagaaaat ttgcctttgc
    15241 ctttaggcgg aatggctttg cgtcgttctt tacctttaag cgacgcgatt aagatcgaaa
    15301 gagatttaac caatgctgta aaaattgccg atgcaaatcg taaaatttta gcccctatgc
    15361 ttatggaaag aaaacttatc cgtgttgatg aagaaaaact tgatacttat cttaatttat
    15421 atgccaataa aaactctatt agcatgaatc aaactcaact tttagctgta gatacgcttt
    15481 ttaaactagg atatgattat aaattttatg ataaaatcat acatgtaaat gattttctta
    15541 tccctagcga atacgaagaa gctagaaatt cttaaaaagg ataaaaatgg atgaaagtac
    15601 cttagttgct cttggagtgc aaacctttaa aatcacactt ttactttcct tgcctatgct
    15661 tttagcagga cttattgcag ggcttgtgat cagtattttt caagcaacta cacagattaa
    15721 cgaaatgaca ctttcttttg ttcctaaaat catcttggtt gtagttattt taatcttttt
    15781 aatgccttgg atgactacaa ctatgattga ttttactgag aatatactaa atcaaattcc
    15841 aacttttatc aaatgatcat tgattttaaa aaatactctt ctgtgcgtat aggaaatgaa
    15901 tttgaagttt tagttttgga tcaaatttgt gattttgatg gttttttaat aggtggtgca
    15961 aacaaccttt tagttagtcc aaaacctaaa aatataggaa ttttaggaga tggttttaat
    16021 tttatacaaa ttttagatcg gaataaagat tttatacatc ttcgcatagg ctgcaaaaca
    16081 aaatcaagta aaatgtatcg ctttgccaaa gaaaacaatc ttaagggttt tgagtattta
    16141 agcaaaattc ctggtacact tggcgggctt ttgaaaatga atgcaggact taaaggagag
    16201 tgtatcagtc aaaatttaat caaaattgct acttctcaag gcgaaattct aagagcaaat
    16261 ataaattttg attatcgttt ttgtccttta aatacgcatt ttttttgggc tgaatttaaa
    16321 ctaaactttg gctttgatac ccttaaagat gaagctttaa aaaatgcaag aagcaaccaa
    16381 cctagtggag caagctttgg ctctatcttt aaaaatccga aaaacgactt tgcaggacgt
    16441 ttaatcgaag ctgtaggact taaaggattt agcaagggag atgctatgtt aagcgataaa
    16501 cacgcaaatt ttttaattaa taaaaaaaat gcaagttttg aagatgcgtt ttttcttatc
    16561 gaattggcta gaaaaaaagt ctttgaagaa tttggcacaa acttagaaaa tgaagtgatt
    16621 ataatctaaa cacacaaaac aataaaagtc taaaaaattt actcttaatc taactttaaa
    16681 taaaatacaa attcaaacca tatagtttta taataataag tatttaataa tattttaata
    16741 ttctgtcgtt ttattttgta ttttatatta tttttaaaaa atataatata tagaacaaat
    16801 tataaaggga ggaaaatctt atgaaaaata tcacattaac taaaatacct ataggagagg
    16861 gcaaagaacc ctgtttaaat tctaaaaaga tagttttatc tttagctact atttcttttt
    16921 tggcaagttg tgctaatgct aaattaaatt ctgaaataaa aacttatgat gaagttaata
    16981 aaaatgttaa aactagatca gcaagtgttt atagccctca agctaagatc aatacgacta
    17041 taaattcttt acacaatcaa caagtaacta ttactggaaa tggaacatca aattctttaa
    17101 caatcggatc aagtggaact ctaggtagca taggcaatac aggtaaaatc atctatgccc
    17161 atgctaatgg tagcaacact cttactcttg caaatcttac taataataga actattaatg
    17221 gtaagattgg tatagaaaac aatggtaatt ttacaggaac tattgctgtc aacacctttg
    17281 aaaatacagg tcaaattaat ggacaaattt acatgggaat ttggggtaac aactcaggaa
    17341 ctcttaatat agataaattt gacaatagtg gaaccataat tgacaacaat aaaggagttt
    17401 ttttgaagga aagaatacca acatacaaac ctttaataac agtggtttta ttagtgcaaa
    17461 taagggtgta gatataggca acataggaac cataaaaaat tttaataaca acggaactat
    17521 acaaggctca gaagtgggag tggctataaa tacaaaaata gatactttta ctaataatgg
    17581 ttttattaat tcccctggta gtggacaatg gaataatggt atatggataa gtagcaatgc
    17641 taccatagaa aagcttgtta acaatggcac aataaaagga ggacattctg ctataatggt
    17701 aacatctcag catataaaaa ctgttgaaaa tacaggaatt atacatgctg aaggagaatg
    17761 gggttctagt atattattag aatatggtgg ttttatagag catataatca atactggaac
    17821 cataagtagt aataatgttg gtataggttc agcttatgga g
//
LOCUS       DARBBO010000027        17822 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.027, whole genome shotgun sequence.
ACCESSION   DARBBO010000027 DARBBO010000000
VERSION     DARBBO010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17822)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17822)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17822
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.027"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..2302
                     /locus_tag="SB854_000732"
     CDS             <1..2302
                     /locus_tag="SB854_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956753.1"
                     /translation="DGGMVYGKYSAIGVGQSQTLGDLYIDGRSNNGTVSGIYSEEHGI
                     LLENNSQTQKIELKNGGIIKGKIDGIRLINSASLSGEMILSGEGSRVEGGRGVGILNR
                     SGKIEGSITIKDGATVTATSNRAIANSGSGSITGGITVSGKNTKLEGNIINTGNASIG
                     SDIKIEGGAKVEGGLVNQGNGSISGSVQVSGGSSIDSITNEGNGAISGSITVDKNSKL
                     DSITNTSTSSTGISGSITNNSDNKLEISNSGNIGGKIESTGSADMVISNSNGGTISGG
                     ISSSGSGSTSISNSQGSTINNGITVLGSAQVEISNQGSVGKDENGNTVTNNGSGSVGI
                     KDWLVSTDKNTGKLNTVVIGGSRAFNVKVENITVDQSNVDLEELNDINNIISGVNQNN
                     IGNIGTNGSGEISLSYDPITGKLTTDFNLNASISGATFRSLISTTSRRSTFIDNVMGN
                     SMQSFALASSSKSQSIAMSEKGNLYADASDYIKSDLNNGSYGSNKEHSLFILPYTSSQ
                     NVELSLNEESKGHAKGTIIGYSTLKDSGIYGVYAGYEDRKMGSTYFDINNRTYYAGLK
                     YFNTLFTTEKGQEVYIKAQGKAALIKNDLTKKIGNNEAKAEPNSYAYGVNTALGMNFI
                     SNKDIFSPEIGLAYEGGYTEAFSMKDTIGQATVKGGERTYANYLNLFSTKTSLTWFRD
                     WLPNLKTSVELGAKFNINPKVEAEARFGNIKVSDEFDLPRVQKFVSTSFIVPVNEAFY
                     FSLSYNGMFDKDGNTHTGFAQFNYFW"
     gene            complement(2533..3498)
                     /locus_tag="SB854_000733"
     CDS             complement(2533..3498)
                     /locus_tag="SB854_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEG0956754.1"
                     /translation="MYRKELQILLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKVLVELCKNNTDNFF
                     LLELYDESSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFDKILKKQDFKSELEK
                     ILDNFNEIALINSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKCEYELKTNSKLVKKEFLISNLLKLARILKS"
     gene            complement(3491..5425)
                     /locus_tag="SB854_000734"
     CDS             complement(3491..5425)
                     /locus_tag="SB854_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacB/RNase II family 3'-5' exoribonuclease"
                     /protein_id="HEG0956755.1"
                     /translation="MKEFLNSLSYGISSHEVNNEFKQIFRELLTNHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTALKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYKNRMDL
                     RALPFCTIDPIHAKDFDDAIYFDTQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPRPLSENICSLKPHLDRLAYCFKITLNHENKVIKEELFEGIINSKRRFN
                     YDEVDKILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADVRKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTRVNLLENVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            5544..6566
                     /gene="ilvC"
                     /locus_tag="SB854_000735"
     CDS             5544..6566
                     /gene="ilvC"
                     /locus_tag="SB854_000735"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEG0956756.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVVSVSEASKIADVIMILAPDEIQADIFNVEIKPNLSEG
                     KAIAFAHGFNIHYGQIVVPKGVDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIITEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            6570..7652
                     /locus_tag="SB854_000736"
     CDS             6570..7652
                     /locus_tag="SB854_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HEG0956757.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVSSVKP
                     DYFIDKQEDLISLNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFILKDTNLTQDQNLTFNEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPELDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMKKLYEALKNQNIFFVDSKTI
                     GNSKANKIAKELSIPYIQRDVFLDNEDDVNYVKKQLENAVKLAQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKGVDLVYLSEIYGK"
     gene            7642..8415
                     /locus_tag="SB854_000737"
     CDS             7642..8415
                     /locus_tag="SB854_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEG0956758.1"
                     /translation="MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASMAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLEESTGTNFLLKENKSKLICDFKEFVSEFASIDINQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLA"
     gene            8412..8795
                     /gene="ruvX"
                     /locus_tag="SB854_000738"
     CDS             8412..8795
                     /gene="ruvX"
                     /locus_tag="SB854_000738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEG0956759.1"
                     /translation="MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKN
                     LLKILEISLLIVGIPKGGSSEEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            8824..9663
                     /locus_tag="SB854_000739"
     CDS             8824..9663
                     /locus_tag="SB854_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HEG0956760.1"
                     /translation="MQNILSSFAQEKNVCVFANTLKTSIEELEKEFLKQNLKFKKINV
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(9839..10336)
                     /gene="msrA"
                     /locus_tag="SB854_000740"
     CDS             complement(9839..10336)
                     /gene="msrA"
                     /locus_tag="SB854_000740"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEG0956761.1"
                     /translation="MKNIILGGGCFWCIEAVFERLKGVINTEVGYSGGKPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILILFFKIHDPTSIDKQGEDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPDQGYCQAVIAPKLQ
                     KIQSD"
     gene            complement(10378..10896)
                     /gene="ppa"
                     /locus_tag="SB854_000741"
     CDS             complement(10378..10896)
                     /gene="ppa"
                     /locus_tag="SB854_000741"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HEG0956762.1"
                     /translation="MNLNKIKIGDIPNKINAVIEIPYGSNIKYEINKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            complement(10906..11484)
                     /locus_tag="SB854_000742"
     CDS             complement(10906..11484)
                     /locus_tag="SB854_000742"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEG0956763.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVINTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERAIEPIVADMKELIKKIQSI"
     gene            complement(11481..13232)
                     /gene="aspS"
                     /locus_tag="SB854_000743"
     CDS             complement(11481..13232)
                     /gene="aspS"
                     /locus_tag="SB854_000743"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEG0956764.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLITEGTIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVIKVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFAKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKEDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELNLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKTDIQQKVFKLLNIDKEQQKEK
                     FGFLLDALNFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            13323..14183
                     /locus_tag="SB854_000744"
     CDS             13323..14183
                     /locus_tag="SB854_000744"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HEG0956765.1"
                     /translation="MQNKIDYKNIKKIGLVTRPNVSLDKEILKLQSILSIYKVELVLL
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSIFLEDRQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCMLCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            14183..15706
                     /locus_tag="SB854_000745"
     CDS             14183..15706
                     /locus_tag="SB854_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEG0956766.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIEVDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFVSFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARAQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVEALLDRIENLS
                     YLIKRYESIENALEVLKQKKYELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEIMLDINLAHLKNLSSGEL
                     NRLRLAFIATECNILNTGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKN"
     gene            15812..17056
                     /gene="cbrR"
                     /locus_tag="SB854_000746"
     CDS             15812..17056
                     /gene="cbrR"
                     /locus_tag="SB854_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HEG0956767.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVIVAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDPVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLINLDEVFFTASIGVVFGKSGDKIDSLA
                     DKASKILSQAKDNGKDRVEVCS"
     gene            17047..>17822
                     /locus_tag="SB854_000747"
     CDS             17047..>17822
                     /locus_tag="SB854_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEG0956768.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIDKI
                     IIPGADIKDLPDAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEDGFYFGIGGVLTFKNAKKLVEILPKIPKDRLLLETD
                     APYLTPEPYRGKRNEPLLTQFVANKMCEVLNLSRKELLEI"
BASE COUNT         6209 a         2410 c         3043 g         6160 t
ORIGIN      
        1 agatggaggt atggtttatg gaaaatactc ggcaatagga gtgggtcaat cgcaaactct
       61 aggagattta tatatagatg gacgttcaaa taatggcaca gtaagtggaa tttatagtga
      121 ggaacatgga attttattag agaataactc acaaactcaa aaaatagaac ttaaaaacgg
      181 tggcattata aaaggtaaga tcgatggtat aagattgata aactcggcct ctttaagtgg
      241 agaaatgatt ttatctggcg aaggttctag ggtagaaggt ggaagaggtg ttggtatatt
      301 gaatcgaagt ggaaaaatag aaggctctat aaccataaaa gatggagcaa ctgttacagc
      361 tacttcgaat cgagccatag ctaactctgg ctcaggaagt ataacaggtg gtattactgt
      421 tagtgggaaa aacactaaac ttgaaggaaa tataatcaat acaggtaatg cttctatagg
      481 tagtgatatc aagatagaag gtggagctaa ggtagaaggt ggtcttgtta atcaaggtaa
      541 tggaagtatc tcaggaagtg ttcaagtaag tggtggtagt agtattgatt ccattaccaa
      601 tgagggtaat ggagctattt ctggttcaat tactgtagat aaaaatagta aacttgattc
      661 tatcactaac acttctacat catctacagg tataagtggt tctattacta acaatagtga
      721 taataaactt gaaatttcta attcaggtaa tatcggtggt aagattgaaa gtacaggtag
      781 tgctgatatg gtgattagca atagtaatgg tggaactatt agtggcggta ttagttcttc
      841 aggaagtgga agcactagta tttccaattc acaaggctca accataaata acggcatcac
      901 tgttttagga tcagcacaag ttgaaatctc caatcaaggc tcagtaggta aagatgaaaa
      961 tggtaataca gtaactaaca atggtagtgg tagtgttgga atcaaagatt ggcttgtttc
     1021 tacagataaa aacacaggta aattaaacac tgtggttata ggtggaagta gagcttttaa
     1081 tgtaaaagta gaaaacatca ccgtagatca aagcaatgtt gatcttgaag agctaaacga
     1141 tataaacaac atcatctcag gtgttaatca aaacaatatt ggcaatatag gaaccaatgg
     1201 aagtggagaa atatctttaa gctatgatcc aataacagga aagcttacta cagattttaa
     1261 tcttaatgct tccatatcag gtgcaacctt tagatcttta atctctacta cttcaagaag
     1321 atcaaccttt atagataatg ttatgggtaa ttctatgcaa agctttgctt tagcttcttc
     1381 aagtaaatct caaagcatcg ctatgtctga aaagggtaat ttatatgcag atgcaagtga
     1441 ttatataaag agtgatttaa ataatggaag ctatggttct aataaagaac attctttatt
     1501 catccttcct tatacttctt cacagaatgt tgaactttct ttaaatgaag aaagtaaagg
     1561 acacgctaaa ggaaccatta taggttattc tactttaaaa gacagtggaa tatatggtgt
     1621 gtatgcaggt tatgaagata gaaaaatggg ttcaacttat tttgatatta ataatagaac
     1681 ctattatgca ggtttaaaat actttaatac cttatttact acagaaaaag gtcaagaagt
     1741 ttatatcaaa gctcaaggta aagctgcttt gattaaaaat gatttaacta aaaaaatagg
     1801 aaataatgaa gctaaagctg aacctaattc ttatgcttat ggagtcaata cagccttagg
     1861 tatgaatttt atttctaata aagatatatt ctctcctgaa ataggtcttg cttatgaagg
     1921 aggttatact gaagcttttt ctatgaaaga caccatagga caagcaacag ttaaaggtgg
     1981 agaaagaacc tatgcaaact atttaaatct tttctctact aaaacaagtc ttacttggtt
     2041 tagagattgg ttgcctaatt taaaaacttc agtagaactt ggagctaagt ttaatatcaa
     2101 tcctaaagta gaagctgagg ctagatttgg taatataaaa gtaagtgatg agtttgattt
     2161 accaagagta caaaaatttg taagcacttc ttttatcgtt cctgttaatg aagctttcta
     2221 ttttagttta agctataatg gaatgtttga taaagatggc aatacccata caggatttgc
     2281 tcagtttaat tatttttggt aatcttataa aagataatac ttagtttaat tagtttactc
     2341 tcctacttgt taaaaatttc atcctgataa ttttaaaatt attaggatgg atgtttttaa
     2401 ggttattaaa ctctttttag attgcaatca ttcttttaaa gtattttaaa aactcagtta
     2461 agattaacaa tacaatcatt ttaaattatt ttaatacgat taaaagaagt gaagaggatt
     2521 gaagagtaaa aattaacttt ttaaaatcct tgcaagttta agcaaatttg aaattaaaaa
     2581 ttcttttttt acgagcttag aattggtttt aagctcgtat tcgcatttaa gcaaaagagt
     2641 gaaaatttct ttatattgtt cgatttttaa actaaaggct tgagagctta aattttgtcc
     2701 cacttgagga ggtggagtat agcctaaaag atctttaaaa tcaattttac cattgacttt
     2761 agcataaagt gcgattttaa acaaacgata aaaagaatta tacaaagagt tgattaaagc
     2821 aatttcatta aaattatcta aaattttttc aagttcgctt ttaaagtctt gtttctttaa
     2881 aattttatca aaaaagcttt caaaacttcc tgtattcaaa ctatagcagt attgttctat
     2941 ggttttttca tctactctta aaccactaaa tttattaagc tcactcgcag caagatataa
     3001 gttttcatca aaacttgtaa aaagagtaaa taaagcattt tgagtgattt caacccctag
     3061 ttgttttgct tttatgctta aaagctccac gccttcttta gctccgttag ctttaaaaaa
     3121 tcttacaaaa tgaggagaga aaattttttc tatatcgctt tgtttagaac tttcatcata
     3181 aagctctaaa agaaagaaat tgtccgtatt gtttttacaa agttcgacta aaactttaag
     3241 atcttttgtt ggaatttttt tagaagtttt aatttcgagt aatttttttt cactaaaaag
     3301 cgatcctgcg cttaaaaaat cactcgcacg ggtgaagttg tattcttcaa aaaaaagttt
     3361 caaagtttca tcgggcttat atttttcttt tataaattca gcataaagtt cgctttgaaa
     3421 attatctgct ccataaagaa agaaaaaatt aggtattgaa tctttagaaa gtaagatttg
     3481 aagctctttt ctatacattt tcttccttta taagtctttg ggtgatttta gcataaattt
     3541 ttgccataac tatatccgct tccatgattt gtacttcaac attttctagc aaatttacac
     3601 gcgtatcata aaggattata tccgctcctt tgatttcatc atctagttta gctatgcaaa
     3661 ctccgtcatt ttggacaact aaagctttaa attttttgcc tatattttta gctgcccatc
     3721 tagcaaattt tctatccata aaatcaaaag caaccttatc cgcctctctt tcaagtgtgc
     3781 taagattctc acaagtgctt tctatgttta aaagtagata attaaaaagt ttttcatcgt
     3841 ttttttgctt ggcttttaaa agtctgtgca aaataagatc agaatacctt cttatagggc
     3901 ttgtaaaatg tgagtattta tcaaaaccta agccaaaatg tcccgcattg acgctagaat
     3961 attccgcttt tttttgtgct ttgatgatga gtttatctac ttctgctctt aaatttaact
     4021 catcagctaa agcttgtatg tcgcgtatga gctcaggaag attgggctta aaatttacat
     4081 cgatgcctaa ttcgcgtaat tcatttaaaa gcttatcgat ttttcttaca tcagcactta
     4141 agtgatttct aaaaacacct atatctatga gttttgctgc ggctttattg gctaaaagca
     4201 tacaatcttc gatcaaatta tgcgaaggcg tgtctttttc aaaaactgta ctttttagac
     4261 ttaaattttc atctaaattc attcttaatt cttcggtgcg aaattcaaag gcatttttaa
     4321 gacgcatttt gcgtaaattt tttgtgattt caaaaagctc ataaagccat gaaagttctt
     4381 ttaaatcagg tttttgtatc aaaattttat caacttcatc ataattaaaa cggcgttttg
     4441 aattgataat accttcaaaa agttcttctt tgatgacttt attttcatga ttgagtgtga
     4501 ttttaaaaca atacgctaag cgatctaaat gaggttttaa agaacagata ttttcactta
     4561 aaggacgagg tagcataggt atagcaatat gtggaaaata aatagaaaat ccacgatttc
     4621 ttgcttcttt atctatagca ctataagcat aaacatattc gctaacatca gcaatagcta
     4681 cataaatttc tcgtttttga gtgtcaaaat aaatcgcatc atcaaaatct tttgcatgta
     4741 taggatctat ggtgcaaaaa ggcaaggctc ttaaatccat gcgattttta tacatactcg
     4801 catcaacact atcaccgttt gctagagctt ctttaatgca agcatcgcta aattcgttgt
     4861 ttttattgaa aagggctaaa gagatttttt catctacgct ttcatcatcg atatgtccta
     4921 aaacttctat gatattgtta ttttcatttt ctatttttaa aattgtccct aaaggtagtg
     4981 cttttaagga tttttgagaa gcttttaagg cagtgcttaa tcctgttttg atattcattc
     5041 caagcacggc ttcgccatac cttttggtga tcactaaaga ggtttcattg gctcttttta
     5101 gaaccaaaat cacctttgca ctggggcgtt ttttctttaa aggtagaagt tttactgcga
     5161 ctatatcttt atagtttgcg ccttttaggt ttttgttttc tatcaaaaga tcttttttga
     5221 aactttcatc aaagcattgt aaaaaacctg tgcctttact cgaaatatca agtactccaa
     5281 aggcaaaacc attgttaaga tagtatttgt ttttgtgttc tttaatgata tgattagtta
     5341 aaagttctct gaaaatttgt ttaaattcat tgtttacttc gtgagagcta atgccataac
     5401 taagactgtt taaaaattct ttcacttttg atactttatg attttttgta aaattcttac
     5461 ataaagttta taaaaaaaat atgaaattta tactttaatt gctataataa tacctttaat
     5521 ttttgaattt ttaaggagtg aatatggcta ttacagtata ttatgataaa gattgtgatt
     5581 taaatttaat caaatcaaaa aaagtagcaa ttataggctt tggctctcaa gggcacgctc
     5641 atgcgatgaa tttaagagat aatggcgtaa atgtaactat cggacttcgt gaaggtagtg
     5701 taagtgctgt taaagcaaaa aatgctggtt ttgaagtggt gagtgtgagt gaggcttcta
     5761 agatagcgga tgtgattatg attttagctc ctgatgaaat tcaagcagat atttttaatg
     5821 tcgaaataaa accaaattta agtgaaggca aggctatagc ttttgcacac ggttttaata
     5881 tccattatgg tcaaattgtt gttccaaaag gtgtagatgt tatcatgata gcacctaaag
     5941 caccaggtca tacagtaaga aatgaattta ctctaggtgg tggcactcct tgtttaatag
     6001 ctatccatca agatgaaagc aaaaatgcta aaaatttagc cttaagttat gcaagtgcga
     6061 tcgggggtgg acgtacaggt attatagaaa caacctttaa agccgaaaca gaaacagatc
     6121 tttttggtga gcaagctgtg ctttgtggtg gacttagtgc tttgattcaa gcaggttttg
     6181 aaactttggt tgaagcaggt tatgaacctg aaatggctta ttttgagtgt ttgcatgaaa
     6241 tgaaactcat tgtggatttg atttatcaag gtggtattgc agatatgcgt tattctattt
     6301 caaatactgc agaatacggc gattacatca cagggccaaa gattatcact gaagagacta
     6361 aaaaagcgat gaaaggtgtt ttaaaagata tacaaaatgg tgtttttgca aaagatttta
     6421 tcttagaacg ccgtgcaggt tttgctagaa tgcatgcaga acgcaaaaat atgaatgatt
     6481 ctttgataga aaaaacagga cgcaatttgc gtgctatgat gccttggatc agtgctaaaa
     6541 aattagtaga taaagataag aactaaacat tgtcaaagaa aaaattagtt caaattcagc
     6601 gttatttaat catagctata ctttttttac tttgcatagc tttagctttg ggaattttag
     6661 taaaatatca aaattcccaa gatgtttctt ctgttaagcc ggattatttt attgataagc
     6721 aagaagattt aatttcatta aataaagatc attatgaaat tggtattttt caagagaatg
     6781 agtttgataa taataaatct gtaagtattt tagagcaaaa aattcaagaa attgatgatt
     6841 taaatacaag tttaaatgag caaaatttaa gcagtgtgga gcagaattta agtttagagc
     6901 aaaatcagag tttagaacaa aattttattc taaaagatac aaatttaacc caagatcaaa
     6961 atttaacttt taatgaagat attcatttaa ataaaatttc taaaaaacca aaacttgcca
     7021 ttattatcga tgatatggca aatgcaagtc aggttagagg tttaaaagct ttaaatttaa
     7081 agttaaatcc ttcttttttt ccgccagata aaaaccatag cgaaacgcca aaacttgctt
     7141 taaaatttga tttttatatg gtgcatttac ctttagcagc aattaattac aataaacccg
     7201 agcttgatac tttaaatcca aatgatagca aagaaagaat ttttaaaaaa atcaagcaaa
     7261 ttaaaaaaga ttttaaggat ttaagatata tcaataatca cacgggaagt ttatttacaa
     7321 gcaatgaaga agctatgaaa aagctttatg aggctttaaa aaatcaaaat atattttttg
     7381 tagattctaa aactataggc aattctaagg caaacaaaat cgctaaagaa cttagtatcc
     7441 cttatataca aagagatgtg tttttagata atgaagatga tgttaattat gttaaaaaac
     7501 aactcgaaaa cgcagtaaaa ctcgcacaaa aaaaaggttt tgttatagcc ataggacatc
     7561 ctaggaaaaa tacttttaaa gccttagagc aaagtaaaga tttgttaaaa ggtgttgatc
     7621 ttgtgtattt gagtgaaatt tatggcaagt gaaattttgc ctgatgaatt tttagaactt
     7681 tttaaagatt taaaaaagcc tcctaaaaaa ttacactata aaggaaattt atctttatta
     7741 aaacaagata aaatcgctat tataggttca aggcgtatga gtgtttatac gaaaaattgt
     7801 gttttttcct tagcgagtat gcttaaaaat gctcatcttt gcgtggtaag tggcggtgct
     7861 ttgggtgtgg atatcaccgc aagtatggca gctatgccaa atactatagg tatttttgcc
     7921 aatggtttag atcaaattta tccaagaact aatgaaaaaa tcattaaaca aatttatgaa
     7981 aatgctttag ctttaagtga atacgaagat gattatttgc caaaaaatta tgacttttta
     8041 ctaagaaatc gtttggttat tgctttaagc aaggccgttg tggttgcaca agcagatata
     8101 aaaagtggtt ctatgcagag tgcaaaactt gctttagaac tcaataaacc tttatatgtt
     8161 ttaccacaaa gactagaaga aagcacagga actaattttc ttttaaagga aaataaatca
     8221 aagttaattt gtgattttaa agaatttgta agtgagtttg caagtataga tataaatcaa
     8281 gatgagtttt tagagttttg taaaaaaggt gtgagtgttg atgaggcttt aaaaatttat
     8341 ggacaaaaag tttatgaata tgaacttgag ggaaaaattt ccatagaagg gctttttata
     8401 agggttttag catgagagct ttggctttag atgtaggttt aaaacgcata ggtgtagcgc
     8461 tttgcataga taaaaagatc gctttgcctt tagatgcagt tttaagaaaa aatcgcaatc
     8521 aagccgctaa tgaaatcaaa aatttactta aaatacttga aatttcttta ctcattgtag
     8581 gcattcctaa gggtggatca agtgaagaag aaatgacaag acgcattaag cattttgttt
     8641 ctttgcttga atttgataaa gaaatttgct ttgtagatga aagcggaaca agcaaagaag
     8701 ctttaggata cggcgtagcc aatacacgca aaaaagatgg taaattagac tctttatccg
     8761 cttttatcat gataaaggat tattttgctc tctagaatag aaaaacttta taccaaagat
     8821 gaaatgcaaa atattttatc ttcttttgct caagaaaaaa atgtttgtgt atttgcaaat
     8881 actttaaaaa ctagcattga agaattagaa aaagaatttt taaaacaaaa tttaaaattt
     8941 aaaaagatca atgtttattg ttatttgttt gatgccaaag ataaggctat cttaagttct
     9001 atgaaagctt ttaatgaggc gcacttttat atacaaaatt attcttctta tttgtgtgct
     9061 ttaaatttag aggtcaaagc agggcaaagt gttcttgata tgtgtgcagc tccgggtggc
     9121 aaaagtatca atcttgcaaa ttttatgcaa aatacaggtt atttagcttg caatgagatg
     9181 agtagggata gattttttat tttgcaaaaa aatcttaaaa attacggcgt gaatgctaaa
     9241 gtttttatga aagatggtaa aaatataggc aatttatgcc ctttaaaatt tgataaaatc
     9301 ttacttgatg caccttgttc aacttttgct aaaataggtt ttgatttgga aaaaagttat
     9361 aaagaaatca aaaatattgc aaaaactcaa aaaaaacttc tacattctgc tttaaaggca
     9421 ttaaaaatag gcggagagct tgtatatagt acttgcacct ttaccaagga agaaaatgaa
     9481 gaagtgatag agaatgcttt aaaaagtgag tttaaattag agcttttaga tattgatttg
     9541 gaaaatgttg aggctaaagc agggcaaagt gaagaatttg ctgaaatttc aaaatgcaga
     9601 cggattttac caagcttaga ctatgatgga ttttttatag ctaagcttag gaaattatgt
     9661 taattgataa aattattcac atttaaatac aaattcataa aaaaacttaa aaaacaataa
     9721 ataatttttt ctttatttta aagcttaaag ttctattttt aagtactttg aaaagaaaat
     9781 cacagcgtga aaaggctgtg aataaagttg aatttttttt aaccttaaaa agatgaaatt
     9841 agtctgattg tattttttgc agttttggag ctattacagc ttgacaatat ccttgatcgg
     9901 gattatttat aaaataatgt tgatgatagt tttcagcttt atagtaagtt tgcaatcttg
     9961 aaattttagt aactattttt ttactaaata ttttttgctg ttcttcaatg aaattttgag
    10021 ctaaaatttt atcttcttca ttttcgtaaa atattattga gcgatattgt atgccaatat
    10081 cttcaccttg tttatctata cttgttggat catgaatttt aaaaaagagt attaggattt
    10141 caagaagaga gatttgtttt tcatcgtaat ttattttgac aacttctatg ttaccatcac
    10201 cattacacac gctttcatag ctaggatttg gttttcctcc gctatatcca acttcagtat
    10261 tgattacacc ttttagacgt tcaaatacgg cttcaataca ccaaaaacaa ccaccaccta
    10321 aaatgatatt tttcattgcg agttttcctt aatcttagcc ctttgaaagg gctaagatta
    10381 tttatagttt ttgattgctt tttctaaaat ttcaattgcg gctttttcat ctttgaagtc
    10441 ttgcacttta acccatttat ttggttctaa aattttataa gtttcaaaga agtttttgat
    10501 tttattcaaa gttgcctgtg gtaagtctgt ataagttttt atattatcat atctcgcatc
    10561 tatttttgaa tttggaactg caagaagttt ttcgtccatt ccactttcat cttccatgat
    10621 taaaacaccg attaagcggc aaggaatcac agctccagct tggataggat attcattaag
    10681 cactaaaata tctacaggat caccatcatc agccaaagta ttagcaataa aaccatagtt
    10741 tgctgggtaa aacatcgcgc tagccataac gcgatctacc atgatagcac cgctatcttt
    10801 attgatttcg tattttatat ttgagccata tggaatttca attacggcat tgattttatt
    10861 tggaatatct ccgattttga ttttgtttaa attcattttt tctccttata tactttgaat
    10921 ttttttaatc agttctttca tgtctgcaac gataggttcg atagcgcgct ctccatcgat
    10981 aataaaatga agttttttct tttgataaaa atctaaaatt tcatttaaag gttctgtata
    11041 aactttcatt ctattgtaaa acacttcttc attatcatct gcgccacgat ttctgcctaa
    11101 aactctttct ttggcaactt cttcgcttac tcttacttct atgacgcctt taagacaaat
    11161 ttcattttgc tcacttaaaa ccttatcaaa ttccatcatt tgctctacgc ttcttggata
    11221 gccatcgatg atgatagttt tagttggagc agcttttaga gcacaaacta tagtatttat
    11281 aacaacatct aaaggaacaa gattgccttt ggagataaaa ctatctatag tttttccaag
    11341 ctcgctccca cttgctactt cagctcttaa aagatctcct gttgaatagt gtgtgatatt
    11401 tgtcgcatct gcttgtgcga ttaaactagc atcggtagtt tttccactac ctggtgcacc
    11461 tatgattaaa aacaattctt tcattttata ttctccctta atttgattcc taattctctc
    11521 attgcttcat tgctagcagg cgatggtgca tctgtcatta agcattgcgc tctttgggtt
    11581 tttggaaagg ctataacctc tcttatgctg tttgctcctg taactagcat gatgagtcta
    11641 tcaagtccta tagcgatacc tccatgtggt ggagcaccaa aatttaaagc atcaagtaag
    11701 aagccaaatt tttctttttg ttgttcttta tcgatattta aaagtttaaa tactttttgt
    11761 tgaatatcgg ttttatggat tcttatacta cctccaccta gctcaacgcc atttaacact
    11821 acatcataag caatagatga aatttcttct aaatcagtct catcgatatt ttttggcatg
    11881 gtaaaaggat ggtgcatcgc agaataactt ccgtcatcat tttgttcaaa cataggaaaa
    11941 tcaacaaccc ataagaattc taaggcattt ggatctataa gatttaactc gttggctaag
    12001 aaaattctaa atcttcccat ataatcaagc acggtttttt tagctcctgc accgaaaaat
    12061 accacatctc ctacttcaag ttcacagcgt ttgcttagct catttaaatc ttcttcgcta
    12121 aagaatttgc aaagcggacc tttaagccca tcttctttaa cttgtataaa agctaagcct
    12181 tgagcaccaa atttacgcac aaattcttca aatctttgca tttgtctttt tgaaaaaata
    12241 gtatcgcctt ttggaacgcg tatggctttg atgcgatttt tctttgtatc tttggcaata
    12301 tttgcaaaaa tttcattatt tgacttagca aaaatatcaa tcacatcaat aaatttaaga
    12361 tcaaatctta aatccggctt atcagagcca taattttcca tagcgtcttt gtattgcatt
    12421 tgtctaaaag gggtttgaat ttctttgccg caagctttga aaatatcttt taaaaaagtt
    12481 tcagctacct tgatcacatc tttttgttcg caaaagctca tttcaacatc aatttgtgtg
    12541 aattcaggtt ggcgatcagc tcttaaatct tcatctctaa aacattttgc aatttgaaaa
    12601 taacgatcaa aaccgctaca cattaaaagt tgtttgaaaa gctgagggct ttgtggaaga
    12661 gcataaaatt caccctgatg cacacgagaa ggcacgagat aatctcttgc gccttcggga
    12721 gtagctttgg taagaatagg ggtttcaact tctaaaaatc ccatatttgc caaagaattt
    12781 ctagctgcta tacaagcttt agaacgcaag gcaaaatttt cataaagttt aggatttctt
    12841 aaatctaaaa agcgatattt taagcgtaat tcttcattta cactttcatc agcgatagca
    12901 aaaggaggta cggcactttc attttctatg gtaagtttag aaacaactac ttcgatttct
    12961 cctgttttta acttaggatt tacaagtcct tcgccacgcg gacgaatagt accttctgta
    13021 ataagtacaa attcatttct tgcattggaa gcgatttcat gagcttcttt actatcattt
    13081 ggatcgcaaa caagttggat aataccgctt ctatctctta aatctataaa aataactcca
    13141 ccatgatcgc ggtagctatt tacccaaccg caaagtttaa cgctttgacc aacatgggaa
    13201 attcccaagt ctgtattata atgacttcgc aaatttattc cttgaaaaag attttttaag
    13261 ataatgagca aaattatagt atttttattc ttttgctttg ctaagatttg atataatttt
    13321 ttatgcaaaa taaaatagat tataaaaata ttaaaaaaat tggacttgtt acgcgaccca
    13381 atgtgagttt agataaggaa attttaaaac ttcaatcgat tttatctata tataaagttg
    13441 aacttgtatt gcttaaagaa agttctgaaa ttttagattt gccaaagtat ggattggatg
    13501 atttgtttaa aatatccgat tttgttattt ctttaggtgg agatggaact ttgatttctt
    13561 tatgccgtaa agcttgtgaa tatgataaag cagttttagg aattcatgct ggacatttag
    13621 gttttttaac agattttaaa gttgatgaag ctgaaaattt ttttcaagct ttttttcaag
    13681 gagaatttag aatagaaaag ccttatttgt taagtatttt tttagaagat aggcaaggaa
    13741 aaattttaga aaaattggct tttaatgatg tggttatcag taaaaacaat caagcttcta
    13801 tggctcatat agaagttttt agaaaagaaa agaaatttaa tgaatatttt ggagatgggc
    13861 ttattgttgc aactcctgcg ggttcaacag cttataattt aagtgcaaat ggacccatag
    13921 tttatacttt agctcaagct tttatcttaa ctcctgtttg ttctcattct ttaacacaac
    13981 gccctattgt cttgccaaaa ggttttgaaa tagagattat ggcaaaggat tgcatgcttt
    14041 gcattgatgg gcaagaaaat tataaaatga atgattttaa aagtataaaa gtgggtttaa
    14101 gtgataaaaa tgtggcttta attcacccaa aaaataggga ttattttcaa attttaaaag
    14161 aaaaattaca ctggggaaat tgatgataaa tagaattttt atgaaagaaa atcttggttt
    14221 taaaaaggct gagcttgaaa tttctaaagg gcttaccgtt tttacaggcc taagtggagc
    14281 tggaaaatcg gtcttgttta aaggaatttt atccgcattt tctttgagtg aaagtgaggc
    14341 taaaattgtc gaaatagaag tagatgataa gttggattta gaaagttttg gtatagaaag
    14401 tgaagaggag aatgttttta agctcttaaa agaaaaaaac acaaaatatt ttattaacaa
    14461 tcaaagcata gcgaaaaaaa gtttgcaaaa tttaagtaaa acttttatta agtatttaag
    14521 cgcaaaggaa aataacgaat ttggaaatga aaaattttta aatctcttag atgccttgga
    14581 gatgcaagaa aatacaaatt ttgtttcctt tttagaagat tttaaaaaag attttaatgc
    14641 ttatagtcaa atttctaatg agcttaatgc aattttagaa gaagaaaaaa aagtagaaga
    14701 attaaaagaa ctagctagag cacaaattga aaaaatttca agcattaatc ctaaaatagg
    14761 tgagtatgaa gagcttttaa tacttaaaaa aaagctttct aaaaaagata aattagaaga
    14821 agcttggagt aaggcagagc gtatttttga gcttgaaaaa gttgttattg aagctttaaa
    14881 tttaagcgaa gttgatgcga gtttttttag tgaatgtttg aatgaattgc gtgtgatttg
    14941 cgaaaatcaa aaaatggaag atttggattt tgatgtggag gcgcttttag atcgcattga
    15001 aaatttatcc tatcttatca agcgttatga aagcatagaa aatgctttag aagttttaaa
    15061 acaaaaaaaa tatgagctag agcattatga aaatttaagt tttgaaaaaa aagaacttga
    15121 aaaaaaattt caagaattaa aacaaaaatt agaagaaaaa gcacaaattt taactcaaac
    15181 aagaaagaaa aaccttaaaa aattagaaaa atgtttaaat aattatctta aagatcttta
    15241 tatgaaagat gcaagtttga cgcttaaaga aaatgaaaaa atttcaattt taggcaaaga
    15301 tgagataatg ctagatatta atttagctca tttaaaaaat ttaagttcgg gtgaattaaa
    15361 tcgcttaaga cttgctttta tagccacaga atgtaatatt ttaaatacag gcaaagggat
    15421 attattttta gatgaaattg atgcaaattt aagcggaaaa gaggctatga gtatagctaa
    15481 ggttttagag gaactttcta agttttatca aatttttgct atttctcatt tgcctcaact
    15541 ttcctctaag gcacataatc attttttagt tgaaaaaaat ggtgaagaaa gtaaggtaaa
    15601 aaagcttgat caagaagaaa gaattaaaga acttgctagg atggtaagtg gagagcttgt
    15661 tagtgatgaa gcgatcgaat ttgctaagac cttatttaag aattaagcgg attttttatt
    15721 ttgctatgtt aaaatatata actataaaaa tttcctttct tttgaaacaa atataataaa
    15781 aaattttaga tataaaggta ttttacacac tatgaataag aaaattttaa ttattgatga
    15841 caataaaatg ctcggcaaac ttttggctaa aaaaattcaa atgactttag attatgaggt
    15901 agatattgct tttggttttg ctgaagctaa ggagttaatg aataatgatt attttttagc
    15961 ttttgtggat ttatgcttgc cagatgcccc aaatggtgaa gttgtggatt atgttataga
    16021 aaagaaaatt cctgctattg ttcttacggc tagtggtgat aaggctacta aagaaaaatt
    16081 tatggataaa gatatattag attatatttt taaagaaagt gaaacttgca ttgatgagat
    16141 tattagttct attgtaaaac ttaatcaata tgcaaaaact aaagtgattg tagctatgag
    16201 caagctacct gaacgtaatg aaattaaaaa aatacttact caaagacaat ttaatgtttt
    16261 agctgcggct catggtgaag aagcaatgag ttatttaaat gataataatg atgttaagct
    16321 tattatagca gatgtcaata tgccagtaat tagcggtttt gagcttttga ctcaagtaag
    16381 agaacgtttt agtgatgatg aattaggtgt gattcttttg ggggatcata atgattcatt
    16441 tgaagcgaat tcttttaaaa atggagttaa tgagtatttg tttaagcctt taagcaagga
    16501 aagttttaat tgtcgcttag atcgttgttt atcttacatg gatgataaaa aatttttaag
    16561 cacttataat gttttagatc ctgtatctgg ggttaaaaat tataatgctt taattgatgg
    16621 aatagatgat tattttaacg aaatagcaac aaaagacgag gaatttgctt ttgctttttt
    16681 agatatagat aatcttcaaa tgattaacga tgaatacggc cgtgaagttg gtgatgaagt
    16741 aattaaaatc tgcgccaatg aaatagtcaa tgaaactaaa ggaagagatc ttgtaggtag
    16801 atatagtgca gaaaaaattt gtattttgct taaaaatata tcccaagaaa gagcgattaa
    16861 aatcttttct cgtatacgag taaatataaa aaaggctggt gttttaatta atttagatga
    16921 agtctttttt acagcttcta taggcgtggt ttttggaaaa agtggagata agattgattc
    16981 tttggctgat aaagcaagta aaatattgtc tcaagcaaaa gataatggca aggatagagt
    17041 tgaagtatgt tcttaaatct tgattttcaa gatggtttaa ggattgttga tactcattgc
    17101 catctagata gtgaagcatt taaagatgat ttagatgaaa ctttaaatcg tgcttttaaa
    17161 aatggtatag ataaaattat catacctggt gctgatataa aagacttacc tgatgcagct
    17221 acaattgctc ataaatataa aaacattttt tttgcagcag gagtgcatcc ttatgaaatt
    17281 gataattatg atgagaaaat tttaaggcag tatttatgcg atgaaaaatg tgtagctgta
    17341 ggtgaatgtg ggcttgatta tttccgtttt aaaagtgatc ttgctgaaga aattcaaaaa
    17401 gaaaaagaaa atcaaaaaaa gatttttatc gcacagcttg aacttgctat tgaatttaaa
    17461 aaacctgtta tcattcactc aagagaagca aatcatgata cttatgagat tttacatggg
    17521 tattctaagg atcttgtagg aggagtttta cactgcttta atgcaagcga acatttgcta
    17581 actctttttg aagatggatt ttattttggt attgggggag ttttaacttt taaaaatgct
    17641 aagaaattag ttgaaatttt acctaaaatt ccaaaagata gactactact tgaaactgat
    17701 gctccatatc ttactccaga gccttatcgc ggtaaaagaa atgaaccttt gttaactcaa
    17761 tttgtagcaa acaaaatgtg tgaagtattg aatttatcaa gaaaagaact tctagaaatt
    17821 tg
//
LOCUS       DARBBO010000028        17021 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.028, whole genome shotgun sequence.
ACCESSION   DARBBO010000028 DARBBO010000000
VERSION     DARBBO010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17021
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.028"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            119..880
                     /locus_tag="SB854_000748"
     CDS             119..880
                     /locus_tag="SB854_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IclR family transcriptional regulator"
                     /protein_id="HEG0956769.1"
                     /translation="MHQPTLRVLNILELLAKEKLTLSAIAKKLNIPAGTLWPILQTLQ
                     EKKYIKCDLKNKSYYLDFKIIELGCNIKNENNIFEIIKKHMKNIRNLTNQTCQMGILK
                     DGNVLYLEKIDANNTVQLKSFIGTSYPAYATSLGKALLSNKNKKELEKLYPKNFDKIT
                     ENTLNNINELYQQIKQIKKEKIAIEIGEMNPQIECMAIGIEHKNKIIAAISISYLIYC
                     SNKAFREKNKKILLEEKNKIEKVLKIYFNDLDTLY"
     gene            complement(911..5464)
                     /gene="rpoC"
                     /locus_tag="SB854_000749"
     CDS             complement(911..5464)
                     /gene="rpoC"
                     /locus_tag="SB854_000749"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEG0956770.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMGAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIVKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IISAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAVLLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVPNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYHLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(5457..9593)
                     /gene="rpoB"
                     /locus_tag="SB854_000750"
     CDS             complement(5457..9593)
                     /gene="rpoB"
                     /locus_tag="SB854_000750"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEG0956771.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKASLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLVGLRLGDQIQEIFDRKQKDFLKELRAKILEICSIPRLANEKEFIKSLSDEELLNYA
                     RDWSKGVKFSTPVFEGVNIEEFSKLFKMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(9702..10079)
                     /gene="rplL"
                     /locus_tag="SB854_000751"
     CDS             complement(9702..10079)
                     /gene="rplL"
                     /locus_tag="SB854_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEG0956772.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMVAGGA
                     VAGGAVAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(10100..10579)
                     /locus_tag="SB854_000752"
     CDS             complement(10100..10579)
                     /locus_tag="SB854_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEG0956773.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLSVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(10731..11432)
                     /locus_tag="SB854_000753"
     CDS             complement(10731..11432)
                     /locus_tag="SB854_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEG0956774.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(11487..11912)
                     /gene="rplK"
                     /locus_tag="SB854_000754"
     CDS             complement(11487..11912)
                     /gene="rplK"
                     /locus_tag="SB854_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEG0956775.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(11938..12471)
                     /gene="nusG"
                     /locus_tag="SB854_000755"
     CDS             complement(11938..12471)
                     /gene="nusG"
                     /locus_tag="SB854_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEG0956776.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(12481..12660)
                     /gene="secE"
                     /locus_tag="SB854_000756"
     CDS             complement(12481..12660)
                     /gene="secE"
                     /locus_tag="SB854_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEG0956777.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVAVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(12679..12754)
                     /locus_tag="SB854_000757"
     tRNA            complement(12679..12754)
                     /locus_tag="SB854_000757"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(12719..12721),aa:Trp,seq:cca)
     gene            complement(12767..12925)
                     /gene="rpmG"
                     /locus_tag="SB854_000758"
     CDS             complement(12767..12925)
                     /gene="rpmG"
                     /locus_tag="SB854_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEG0956778.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(12978..14177)
                     /gene="tuf"
                     /locus_tag="SB854_000759"
     CDS             complement(12978..14177)
                     /gene="tuf"
                     /locus_tag="SB854_000759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEG0956779.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(14246..14320)
                     /locus_tag="SB854_000760"
     tRNA            complement(14246..14320)
                     /locus_tag="SB854_000760"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14286..14288),aa:Thr,seq:ggt)
     gene            complement(14425..14501)
                     /locus_tag="SB854_000761"
     tRNA            complement(14425..14501)
                     /locus_tag="SB854_000761"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14465..14467),aa:Gly,seq:tcc)
     gene            complement(14508..14593)
                     /locus_tag="SB854_000762"
     tRNA            complement(14508..14593)
                     /locus_tag="SB854_000762"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14557..14559),aa:Tyr,seq:gta)
     gene            complement(14643..14718)
                     /locus_tag="SB854_000763"
     tRNA            complement(14643..14718)
                     /locus_tag="SB854_000763"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14683..14685),aa:Thr,seq:tgt)
     gene            complement(14810..15571)
                     /locus_tag="SB854_000764"
     CDS             complement(14810..15571)
                     /locus_tag="SB854_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG0956780.1"
                     /translation="MSILKIENLQKYYGSHHALKDINLEVKAKEVVVILGPSGCGKST
                     LLRCINGLEEIASGNIYIDNEKIDKDFKEWPRMRQKVGMVFQSYELFEHLSVEENILL
                     GPMKVQKRKKDEVLKEAKIWLEKVGLLHKIHAYPRELSGGQKQRIAIVRSLCMNPELM
                     LFDEVTAALDPEIVREVLEVMLNLAKEGMTMLIVTHEMGFAKAVADKIIFMDEGKIIE
                     ENDPKSFFKNPKSERAKKFLNLFDYHNIDKNNIGL"
     gene            complement(15573..16229)
                     /locus_tag="SB854_000765"
     CDS             complement(15573..16229)
                     /locus_tag="SB854_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG0956781.1"
                     /translation="MLELLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFAYVIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(16222..16923)
                     /locus_tag="SB854_000766"
     CDS             complement(16222..16923)
                     /locus_tag="SB854_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG0956782.1"
                     /translation="MDFDFILAQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRP
                     SFACAIVGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLHA"
     gene            complement(16939..>17021)
                     /locus_tag="SB854_000767"
     CDS             complement(16939..>17021)
                     /locus_tag="SB854_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEG0956783.1"
                     /translation="KISELIDTKKGRIEILNKDMIMKELW"
BASE COUNT         5460 a         3414 c         2246 g         5901 t
ORIGIN      
        1 ctgccaattt ttacaaaaaa aatattaaaa ttaataaata ataaaaatta tgattttatg
       61 ttactaaaag taaaaaatat gctaaaattt ataaaaataa aacaaggata aagacaatat
      121 gcatcagccc actcttagag tgttaaatat tctagaatta cttgcaaaag aaaagcttac
      181 cttaagtgct atagctaaaa aattaaacat tcctgctgga actctttggc ctattttaca
      241 aactcttcaa gaaaaaaaat atatcaaatg tgatttaaaa aataaaagtt attatttgga
      301 ttttaagatt atagaattag gatgtaatat aaaaaatgaa aataatattt ttgaaataat
      361 caaaaagcat atgaaaaata taagaaattt aaccaatcaa acttgtcaaa tgggaatttt
      421 aaaagatgga aatgtgcttt atttagaaaa aattgatgcc aataatacag tacaattaaa
      481 atcttttata ggcacttcgt atcctgctta tgcaacatct ttaggcaaag ccttactatc
      541 aaataaaaat aaaaaggaat tagaaaaact ttatcctaaa aattttgata aaattacaga
      601 aaacacctta aataatataa atgaactcta tcaacaaatc aagcaaatta aaaaagaaaa
      661 aattgccata gaaattggag aaatgaatcc tcaaattgaa tgtatggcta taggcataga
      721 acataaaaat aaaataattg ctgccattag tatatcttat ctaatttatt gctctaataa
      781 agcttttaga gaaaaaaata aaaaaatact tctagaagaa aaaaataaaa tagaaaaagt
      841 tttaaaaatt tattttaatg atttagatac actgtattaa tatagccccg aagggctata
      901 aaatagagtt ttattcttgt tctttaagtt ttaaattttg ttcgccataa agccctgttc
      961 caacaggaat cattctacct agaataacat tttcttttaa atcttctaag tagtcaaatt
     1021 tacctgctat acttgcttca gttaaaactt tggtagtttc ttggaatgaa gccgcagaaa
     1081 tcacactatc acttccaatc gctgctcttg ttacacctaa aagcacaggc tcggcaatag
     1141 ctggttctcc acccattcta atgattcttt cattttcttc acggaattta cgtcttgaaa
     1201 ccaaatcacc ttcaataaat ttcgtatgtc cactatctac aacttttact tgtcttagca
     1261 tttgagaaac gataacttct atatgtttat cagaaatcac aacaccttgt ccgcgataaa
     1321 cttgctgaat ttcagaaatc aaataataat gcaaggcttt ttcacctaaa attttaagca
     1381 catcatgact cgaaacaact ccatctgtaa gtttttcacc tgcatgaata aactctccat
     1441 ctcttacttg aatatgtttt gatttgtcga ttaaatactc agcacttgtt ccatcttctg
     1501 cttggataat aattctttct ttagaacgca aaggcttatc aaaacgaaca acaccatcaa
     1561 tttctgcaat cacagccgca ttttttggtt ttcttgcttc aaaaagttca gaaactcttg
     1621 gaagacctcc tgtaatatcc tttgatttag ctgctgcttt tggagttttt gctaaaatat
     1681 ctgcttgagc aattttatcg ccatcatgaa caaaaataac ggtttttggt tcaaggtgat
     1741 aacgcacagc tttatcacct tttcctgcaa ttaccaaagt tggtctaact ccgctaggta
     1801 aatactcatt aattactaaa gaacgcttac ctgtagcttc atcaatttgc tcatcggcac
     1861 tataacctgc ttcaatatcc tcaaagctta caacaccatc aatttctgca atgatagtat
     1921 tattataagc atcccattct gcaatcactt ttctttcttt tttaggagca cttgcaatga
     1981 tagtatttgc gtcatcgatt ttttcactat cgttaaattc tatcttagat tctcttggga
     2041 tatagtgtct ttttgcttct ctatcatttt catcagcaat cactacaaag aatccttttt
     2101 ctttaacaat atcacctttt ttaacatttt ttactctatc taaaccatcg cctttaagga
     2161 tgtaaaattt gagtgttcct ttttcgcctg ctttgatatt ttgaactaca ggctcgccat
     2221 cttctactaa aatttcactc gcaaaaggaa tacgatttgg tacattccaa ccctctttaa
     2281 tcacttctac gatactttca ttttcttcta cttgcatgcc gctttgatat ggcaaataaa
     2341 gttttccatc tatactgcca cttacacctg ctaattcatt tggtttagca agatcgtatt
     2401 ttcttaatat gtattttact tcttgttttt tatctttaat agaaacaatc acatcttcat
     2461 gaatattttc tatattaatc acacctttaa atggagtttt gatttttggc tccacaagta
     2521 aaaccgccgc atttctacga tttgctacga tatttttacc ttctttgttt ttataagttt
     2581 taagattata aaatcttata aaaccttctt tttgtgcgct tacttgtcta tcttgtaaat
     2641 ccgtacttgc agttcccccg ctatggaaag ttcttagagt tagctgcgtt cctggttcac
     2701 cgatagattg agcggaaata attcccactg cttcgcctgg ttttactaat ttaccttcac
     2761 caagattgat accataacat tttgcacaaa ttcctttttt agctttgcag gtaataggag
     2821 tgcggatatt gacacttttt ataccgcttt cgccaagaat ttttgctttt tcctcatcca
     2881 ttaaagtacc ttccgcaaaa agcacagaat ttgtaatagg atcaatcaca tcctcagcta
     2941 aaaccctgcc taaaattctt tcttctaaag tttctataat agaactatct gcggtaattt
     3001 cattgatttc aacaccctca tgtgttccac aatcttcaat ggtaattttt acattttgtg
     3061 caacatcgat gagttttctt gtcaaataac ccgcatttgc tgttttaaga gcggtatctg
     3121 caagaccttt tctagcaccg tgagttgaaa taaagtattc aagaacattt agcccttcac
     3181 ggaaatttga aataataggc gtttcgataa tagaaccatc aggtttggtc ataagtcctc
     3241 tcatcgcagc aagctgagaa atttgagctg cactacccct agcaccagaa tctgccatca
     3301 tataaataga gttaaaacct tctttatctt tttctacaag cttcatcatt tcttttgaaa
     3361 gaacattgtt tgtacttttc caaatatcaa tgattttatt gtatctttcc cctgaagtaa
     3421 tcaaaccgag attataagaa ttttgaattt ctcttacttg tttttttgct tcatcgatag
     3481 ctttttgttt atcattagga acaataatat ctgcaatcga aattgaaata cctgctttag
     3541 ttgcatattc aaaacctaaa tttttaagtc tatctaagaa acttgctgta atctctaaac
     3601 caccttgttt ataaacataa tctacaagcg cagcaatgtc ttttttcttt aagactttat
     3661 tccaactatt ttcaggcaca aaatcaggca agatggattt aacaatcaat cttcctgctg
     3721 tagtggtaat ctttctacca tctaccatag tttgtatgct cgcatgaata tccaaacact
     3781 tgctttcaag tgccatcatc acttcatcaa tgcctgtaca aattttatgc gaacctttag
     3841 cacctgcttt ttccaacgaa agataataaa ttcctaaaac catatcttgc gatggaacgg
     3901 ttacagactt accgcttgct ggtaaaagaa tattcattga tgaaagcata agcactttac
     3961 attctgcaat agcctcttga gaaagcggta catgcactgc catttgatcc ccatcaaagt
     4021 ctgcgttaaa tgctgcacaa accaaaggat gaagttgtat agccttacct tccactaaaa
     4081 caggatgaaa agcttggata gaaagcttat gcaaagtagg tgcacggttt agcataacag
     4141 gatgtccctt tactacctct tctaaacatt cccaaacttc attggtttta ttttctatca
     4201 tttttttagc ttgttttact gtggttgcat aacctttttc ttcaagctta gctaaaagat
     4261 gtggcttaaa aagctctaaa gccatttttt taggtaaacc gcattgatcc attctaagtt
     4321 ttggacctac aacaataacg ctacgacctg agaaatccac ccttttacct agtagatttt
     4381 gtctaaaacg tccttgtttc cctttgatga tttcacttaa agatttcaat gggcgtttat
     4441 ttgctccttt tacagcatta gcacgacgac cgttgtcaaa aagcgcatca acagcctctt
     4501 gaagcattct tttttcattt ctgataatga tttcaggtgc atcaagttcc ataagttttt
     4561 taagacgtgt atttctattg ataacacgac gatataagtc attcacatca gaaactgcaa
     4621 atttcccacc atctaaagcc actaaaggac gcaaatctgg cggtaaaact ggaagatttg
     4681 taatcatcat ccattcagga cgatttggta cagcttcgtc gctatcggta ttggcgttta
     4741 aatttgaatt taagaaattt tctacaactt ttaagcgttt aatgatagtt tttttcttag
     4801 cctctgaatt tgtagccccc atttcttctt taagctgatt taaaagcgct acaagatcta
     4861 aatttgcaag taaatcacga acaacttctc cacccattct tgctttaaag ccgctatttt
     4921 catagcgttg cattaaattt tgatattgct cttcgttcaa aacatcgcaa tattccactt
     4981 ttttagtact ttcattatca tagaaagcat cacctgggtt ttcaacaata taagcttcat
     5041 aataaagcac gcgctcaaga tctttcatct taacacccaa aagcgttcct atacggcttg
     5101 gaagagaatt aacataccaa atatgagcca caggagttac aagctcgata tgccccattc
     5161 tagaacgacg cacttttgaa tttgctactt caacaccaca tttttcacac ttaacgcctt
     5221 taaaacgcat ttttttgtat ttaccacaaa gacactcata atctcttata ggtccaaaaa
     5281 tctttgcaca aaaaagccca tctctttcag gctttaaggt tctataatta atagtttctg
     5341 gtttttttac ttctccataa gaccatgatt tgattttttc aggacttgca agtcttagtt
     5401 gaaatgcttc aaaatctcta ggtcttgcat cttctttaat ttctattact ttaaatttac
     5461 tcattatctt catccttatc aaaaatctca acatctaaag caagagattt aagctcattg
     5521 gttaatacaa aaaatgtttc aggaattcct gttgctggaa cattttcacc ttttgtcaat
     5581 gctttatagg cactaaatct accttctaca tcatctgatt ttatggttaa catttctctt
     5641 aaagtgtgag ccgctccata agcttcaagt gcccaaactt ccatttctcc aaatctttgt
     5701 cccccaaaga gtgctttacc acccacaggt tgttgggtaa ccaagctata aggtcctgta
     5761 cttcttgcat gaactttttc atcaaccaag tgatggagtt ttagcatata catacatcct
     5821 acatgaacac gctctgcaat tttttccccc gtgcgtccat cataaagttc tgttttgcca
     5881 tccatatcta tcttagccat tttaaaaagc ttgctaaatt cttctatatt tacaccttca
     5941 aaaacaggag tagaaaattt aactccttta ctccagtctc tagcatagtt taaaagctct
     6001 tcatcgctta agcttttaat aaattctttt tcgtttgcaa gtcttggaat agaacaaatt
     6061 tcaagtattt tcgctcttaa ttctttaaga aaatcttttt gctttctatc aaaaatttct
     6121 tgaatttgat ccccaagtct aagtccaact aaacctaaat gactttctaa aatttgacct
     6181 atattcatac gacttggaac gccaagtgga ttaagcgcaa tatccacgct cttaccattt
     6241 ggcaaataag gcatatctac ttcaggaact atagttgaaa ctataccttt atttccatga
     6301 cgtcctgcca ttttatcacc gactttaagc tttctttttg tagcaatata aactttaaca
     6361 agcttaatta ccccacttgg taaaatatca tctttttcta aaatttcaag cttttcatcg
     6421 tgttctgctt ttaatttttt cttctcattt tggaaatgat tttttaaatc atcgtattct
     6481 ttttgaatct ctttagaata agctttaatc aaagttgtta aagtaaaacg attgattttt
     6541 tcaagttcgc taatatctgc agtttgtcct tttttataat ttttatctcc aattttttga
     6601 tcgctattta aagaggcttt ggaaagaaga gcacaaacac gaagcatttc ttctctatcc
     6661 atcatcaaaa gtctatcatg atgctctttt tctaaagcca ttttttcttt atcataagat
     6721 tttattgcgc gatcatcttt ttcatagcct tttttagtga aaattttaac atccacaaca
     6781 acaccctcta aagaagcggt tgcataaagg gatttattca caacatgtcc tgctttttct
     6841 ccaaaaatcg ctcttaaaag tctttcttca ggagttggtt taacctcacc ttttggagaa
     6901 accttaccca ccaaaatcat acctggtttg atatgggtac caatttttgc aataccgctc
     6961 tcatcaagat gcgcaacatc ttcttctttt acatttggaa tatctttggt aatttcttct
     7021 ataccgtctt ttagttctct tgcttcaatt tctttttcat aaatgtgcac gcttgtaaaa
     7081 gtatcttcac gaataattct ctcacttaca actatagcat cctcatagtt ataaccattc
     7141 caaggcataa aagcgattaa agcattttta cctatagcaa gttcgccttg atccatagaa
     7201 ggaccatctg cgataatttg tcctgctttt actatatcac cttttttaac aatagggtgt
     7261 tgaatataat ttgtattttg attggttctt aaatttttct ccatagtgta atggtcaata
     7321 aatggacctt tatcatcttc acctaaaatg aaaatgcttt tattatccac tttctcaacc
     7381 acaccgccac gctttgcttt aacagcttcc caagcatcac gcgcaataat ttgttccata
     7441 cctgttccta ctatcggagc tgaagcagta agaagtggca cagcttgacg ttgcatgttt
     7501 gaacccatta gcgctctgtt tgcatcatcg tgctctaaaa acggaatcaa agaagctgca
     7561 actccaacaa ccatacctga gcaaagatcg attaattgca cttcttcgcg tcttgcaagt
     7621 atagtttcac catcttgcct agcctcaaca aattcttcta ctatattgcc tttagcatca
     7681 accttagttg aagctggtgc gataaacaag ccttcttctt gtgtcgctgt aagataaaca
     7741 acttcattag tcactttacc atttacaact tttctatatg gcgcttcaac aaagccaagt
     7801 tcatttactt ttgcataagt agaaagagtg ttaatcaaac caatattttg accttcaggt
     7861 gtttcaactg gacaaattct accataatgt gtcgcgtgaa catcacgcac ttcaaaacct
     7921 gctctttctt ttacaagtcc accttcacca agcgctgaca aacgacgctt atgagtaacc
     7981 tcgcttaaag ggttggtttg atccataaat tgcgaaagct gacctcctgt aaaaaattca
     8041 atgatagttg tagtaatcat tttaggattg attaaatcat aaggcattac tttatcaaga
     8101 tccgcattta aagaagtaaa tttatctctg atcgcctttt gcatttttgc aagacctaaa
     8161 tgaagttcat tggctaaaag ttcacctata gaacggatac gacgatttcc taaatgatct
     8221 ctatcatcaa tatgtccttt accatttttt actttaatta aatattttgc agttttaata
     8281 atatcttcat tagtcaaaac agtaacatac tcaggtactt caagacctaa tttatggttc
     8341 attttcatac gacctacctt ggtaagatcg tatctttcag gattgaagaa taaatcattt
     8401 acaaaagcct tcgctgcatc ttttaccaca ggttcacctg ggcgcataac tttgtaaatt
     8461 ctaatcgcag ctaaatcatt ttcatcatcg atattttcac tttgtttaag aagttttaga
     8521 gtttctccat cttgggcaaa ggagttaata atcgctgcat caacgccatt agccaagtca
     8581 tttgctatat caaaactttt ttgctcttta atcttagcaa gcttactctc atctaacaaa
     8641 gttaaagaat caaataaaac ctctccactt tctttatcaa taataggatt tgctaaataa
     8701 cgattaagta aaatttctac aggatattct atccatttta aaccgtcttt aataagctgt
     8761 tctgcttttt tctttgtaag tctttttcca gcttgatgaa cgatttttcc tttttcatct
     8821 ttaatatcat attctattct atccataaaa tcatttggat taaattctgt taaaaattta
     8881 tcttttttca catgtatagt ctgaatagga taaaacaact taataatatc ttgtttttta
     8941 taccctaaag ctctaaaaag catagttaca ggaacttttc tacgcttatt gattcttaca
     9001 tacaaaacat ctttggcatc gtattcaaaa taaagccacg aaccacgatc aggaataatt
     9061 tgtgctgtat aaacaagctt atttgcaacc gttgaacttt cttcttcttt aaaaataaca
     9121 ccagggcttc tatgtaattg atttacaacc actctctcaa ccccgttaat gataaaagat
     9181 acacgatctg tcattaaagg aatttcgcgg atataaattt cttgttcttt aatatctttt
     9241 acgccaactt tttcccctgt tttttcatct ttttcatgca gagtaagacg gattttcatt
     9301 tttaaattta cagaataagt caaacctctt tccatgcatt cgcgaatggt atattttggc
     9361 ttgcctattt cactactaac atattcaaga ctcaatctat tttgcggatc atgaatagga
     9421 aaaattgatt taaaaacttt ttctatacca ctttcaccat tatcaagatt taaaaaataa
     9481 tcaaaactct ttttttgtaa ttgtagaaga tttgggattt ctatttgttt tgaaatgttt
     9541 gagaagtcta ctcttaaacg atttcctaat ttattatcta acatatcgca catacctcat
     9601 ggtaaatttt gtaaatttaa aaaagaagac ctaaaaatta ggtaaaaata aaaaaagaag
     9661 acttgccttg gcaaatcttc ttctaacttt aaagcttaaa attacttaag ttctacttta
     9721 gcaccagctt cttcaagttg ttttttagct tcctcagctt cagctttagc cacaccctct
     9781 tttagagttg aaggagtttg ctcaactgca tcttttgctt ctttaagacc aaggcctgta
     9841 agagcacgaa cgattttaat aacttcaatc tttttagcac cgccatcagt taaaacgata
     9901 tcaaattcag ttttttcttc agcagcagct acagcaccac cagctacagc accaccagct
     9961 accattacag gagcagcaga cacaccaaat ttttcttcaa attcctttac aagttctgat
    10021 aactcaagaa cacttaaatt tgaaatatat tctaatacat cttctttaga gattgccatt
    10081 ttttatcctt ttatttaatt tattcagatt cttttttatt tttaagcgca tttaaaccta
    10141 ttgtgaaatt ggtaattggc gcattccaaa cttgcaaaag catagcaagc aactcattgc
    10201 gtgaaggcat tttagcaaga gctttaacct tagcaacatc tgcaacttcg ccttcaatat
    10261 gagctgtttt gatttcaaat ttatcgttat tttcttcaaa tttagcagct acttttgaaa
    10321 cacttagctg atcttcgccc caaagataaa tatttgtatc tttaagaact agacctgttt
    10381 taccggaatt gttaagagca atgttagcca aagtattttt aacaatttga acttttacat
    10441 tgttttctct tgcattattt ctaagctctt ctagtttttt tgtgctaaga cctctgtaat
    10501 tacaaactac aatagcttca ctagctttaa aaccttcttc aagtttagca ataatctcaa
    10561 ctttttcgct tctagtcaca ttttctcctt tccgattgag atttcaagta gagtggaaat
    10621 ccaattaagc ttacgcctcg actatcttca atctaaaata aacatttcaa aaaatcaaaa
    10681 attttttcaa atgtttattt taaaacaaaa gagttgcaaa aaagcaactc ttatttcata
    10741 tcaagcaatt cttgtgtttc aagctttaca gaagggctca ttgtcaaaga taaagccgca
    10801 tttttaatat atctaccttt agctgcagca ggtttatgtt tgttaattgc ctttacaaaa
    10861 gtgctaacat tatcccataa ttgttctttg gaaaaactta ctttaccaag acctgcatgg
    10921 atatttcctt gcttatcaac acggaaattt acctgaccac tttttgcatt attaactgct
    10981 tgagcaacat ccatagtcac tgttccagtt ttaggatttg gcattaaacc ttttggccct
    11041 aaaattctac caactttacc aacaagtccc attaaatttg gagtagcaat caaaacatca
    11101 aaattcatat tacctttttg aatttcttct actaaatcat cgctacccac aatatctgca
    11161 ccagcatttt tcgcttcatc agcttttgcg tcttttgcaa ttacagcaac acgaactttt
    11221 ttacccgttc cagcaggtaa aacaacagat cctcttacca tttgatctgc atgtcttgga
    11281 tcaacattaa gttttaaagc aatttctaca gtctcatcaa atttagcaga ctttaaagtc
    11341 tttattgtat caattgcatc gcttaaagca tactctttat ttgaatcaat tttttgtgat
    11401 aattctttta atctttttgc tatcttagcc atttattttc tccgcatttt aaagtgctac
    11461 cgccttttac tttggcggtg aaaggattaa tctacgattt caacacccat agaacgagct
    11521 gaacctgcaa taattttagc agcttgatct ctatctttag tatttaaatc tgcaattttc
    11581 ttatctacta tttctaaaac ttgagcacga gttaacttac ccaccttatt tttaagtgga
    11641 ttatccgtac ctttagaaat tccagctgct tttttgatca aatccgtagc tggcggttgt
    11701 tttgtaataa aagtaaaact tttatctgca taaacagtga taacaacagg gatattaaaa
    11761 cctgccatat cttttgttct ttcattaaaa gccttacaaa actccataat attaacacct
    11821 tgctgaccca aagcaggacc aacaggtggt gatgggtttg cttttgtggc agcaatttgc
    11881 aatttaattt cgcctacgac ttttttagcc ataacaaatc tccttacttg atataaatta
    11941 aattattttc tcaacttgag aatataagat ctccactgga gttgaacgtc caaaaataga
    12001 aacatttaat tttaataaac cacgaaccat atcatactct tctacaattg cagtaaagtt
    12061 tgcaaatggc ccttctgtga ttctcacatt ttccccttct tcaaaagaaa tctttggttt
    12121 aggcgctgca cgattgtgaa ctttttccaa aatcaaatta atatcttttt ctgttaaagg
    12181 ggttggcttt ttggattctc caataaaacg accaaccttt ggaagagatt gaatgcgatg
    12241 ccaaagctct gtatttaaat caagaagtgc aaaaacgtat cctgaataca aacttctttc
    12301 gctaatcttc tcctttccat tcttaaattc aataacatct tcagttggaa caacaatttc
    12361 tttaagttgt tcttcaattc cgttatcttt tactaaattt tcaatggctc ttttaactgc
    12421 catttcactg ccagcataag tttgaattgc ataccattta tgagtactca tttactctcc
    12481 ttatacgatc gcagaaacaa tagaggacat aagccaatcc actaacgcca aaaacaaaga
    12541 aatcaccgca acaaccacaa aaactgtaat ataggcattt cttacctgtt cttttaaagg
    12601 aaaaattact ttccttaatt cggcttttga taatttaaaa taagttatta atttttccat
    12661 ttatttaaac cttaattatg gcagggcaag agggattcga acccccaacc atcggatttg
    12721 gaatccggcg ctctaccgtt ggagctattg ccctaagggc gcaagcttaa ctttttagct
    12781 taacttcttt gtgaagtgta tgttttttta atcttgggca atattttttt aattctaatt
    12841 tttcagtagt atttttacta tttttatagg tgctataatt aatatcacca cattcttcac
    12901 actttaaacc aactttaatt ctcatttcaa ttttccttaa aaaattaaag ccaagctttt
    12961 aacttggctt tattaaatta tttaataatt ttagaaacaa cacctgaacc aacagtttta
    13021 ccaccttcac gaatagcaaa acgagttcct tcttcaagtg ctactggagc gatcaagctt
    13081 acagtaattc tcacattttc acctggcata accatttcaa caccatcagc taatttaatc
    13141 gaacctgtaa catcagttgt tcttacataa aactgtggtc tatagttgtt aaagaatgga
    13201 gtatgtctac caccttcatc tttatttaag atataaactt cagcttcgaa gtcagtgtgt
    13261 ggagtaattg attttggttt agcaagaacc ataccacgga taacttcttc ttttttagta
    13321 ccacgaagaa gaacacctac gttatctcct gcttcgcctt gatccatttc ttttctgaac
    13381 atttcaacac ctgttacagt tgttgtttga gtatctttaa taccaacgat ttcgatagta
    13441 tcacctactt ttacaacacc tttttcaatt ctacctgtaa caacagtacc acgacctgaa
    13501 attgagaaaa catcttcaat tggcatcaag aagtcttttt cagtatcacg agttggagtt
    13561 ggaatatagc tatcaactgc agccataaga tccataattt ttgctgacca ttcaccatct
    13621 tgtccagctt tagcttcttc aagagctttt aaagcagaac cagaaataat aggtgtatca
    13681 tcgcctggga aatcataaga gcttaataat tctctaattt ccatttcaac taactctaaa
    13741 agttcagcat catcaaccat atctgcttta ttcataaaaa caacaatata tggaacgcct
    13801 acttgacgag aaagaagaat gtgctctcta gtttgtggca tagggccatc tgcagcagaa
    13861 acaaccaaga tcgctccatc catttgtgca gcacctgtaa tcatgttttt aacataatct
    13921 gcgtgacctg ggcagtcaac gtgtgcatag tgacgattgt ctgtttcata ttcaatatga
    13981 gaagtagcaa tagtaatacc acgctctttt tcttctggag cattatcgat attatcataa
    14041 tctttaagct ctgctaaacc tcttctagaa agaacagcag aaatagcagc tgttaaagta
    14101 gttttaccat ggtcaacatg accaatagta ccaatattta cgtgtggctt attacgtgaa
    14161 aatttttctt tagccatttt tttcctccgt ataaaaaata aattgagcaa agcaagtctt
    14221 atatctatat aattttttca attcatggag ctcatagcgg gaattgaacc cgcgacctct
    14281 cccttaccaa gggagtgctc tacctctgag ccatacgagc gctcagaaaa attatacaca
    14341 ataacagaca acaaaaactc ttaaatggga tatatactgt aagttaaagg ttttaaaata
    14401 cagctcccag ttcttttaaa ttattggagc gggaaacggg actcgaaccc gcgaccctca
    14461 gcttggaagg ctgatgctct agccaactga gctactcccg caaagcatgg tggtgagtcg
    14521 tggattcgaa ccacggaagg cgaaagccag cagatttaca gtctgccctc gttggccact
    14581 tgagtaactc accataaaaa tattgctttt tcaatattct ggtcaaacac tgctaaaata
    14641 aatggagctg gttaagggac ttgaaccccc gacctgctgc ttacaaggca gctgctctac
    14701 caactgagct aaaccagcaa aaataaaagt aagattataa ctcaaaaaaa aaattttgtc
    14761 aagacttttt tagtttttct ataaaatttt agtcttgtaa attttattat cataaaccaa
    14821 tattattttt atctatatta tgataatcaa ataaatttaa aaatttcttt gctctttcgc
    14881 tttttggatt tttaaaaaaa cttttaggat cattttcttc gatgattttt ccttcatcca
    14941 taaaaataat tttatctgct acagctttag caaaacccat ttcatgagta acaataagca
    15001 tagtcatacc ctcttttgca agatttaaca tcacttctaa aacttctctg acaatctcag
    15061 gatccagcgc tgctgtaacc tcatcaaaaa gcattaactc aggattcatg cataaacttc
    15121 ttactatggc aattctttgc ttttgtcctc cgctaagttc tcttggataa gcatgaattt
    15181 tatgcaaaag ccccaccttt tcaagccaaa ttttagcctc ttttaaaacc tcatctttct
    15241 ttcttttttg cactttcata ggccctagaa gtatattttc ttcaacactt aaatgctcaa
    15301 aaagctcata agattgaaaa accataccaa ctttttgacg cattcttggc cattctttaa
    15361 aatctttatc tattttctca ttatcaatat aaatattacc acttgcaatc tcttcaagcc
    15421 cattaataca acgcaaaagc gtagattttc cacatccgct aggacctaaa atcaccacaa
    15481 cttctttagc cttaacttct aaattaatat cttttaaagc atgatgcgaa ccataatact
    15541 tttgtaaatt ttctattttt agtatactca ttttagctcc attttttctc taattttctt
    15601 gaatataaag tgataggata acaaagtata aaaaagataa aaaaaatcaa accataaata
    15661 ataaaaggtg caaaatcatt tctattatga aattctataa tttgttgccc tacttttaca
    15721 agctctaccg cgccgattaa ataagcaaag gttgtacttt taatcatacg agtaagtaaa
    15781 ttcatgctca taggagttaa acgacgcata gcttgtggaa taataacata agcaaaactt
    15841 tgcaccgtat ttaaacctaa agatgatgca ctttcatact gatgttttgg aatactctgc
    15901 aaggaaacac gcaccaaatc catcatctca aaacaacccc aaatgctaaa aacaataata
    15961 gctgcactta cagaactcaa atcccaccca aaccatctag gaaaaccaaa atacaccaca
    16021 aaaagccata ctaaaagtgg cataacacgc acaaattcta aacccaaacg acaaaaagca
    16081 tagatatagg tatttttaaa actcattaaa attcctaaaa ataacccacc tatcgaagta
    16141 ataataatgc tgataaatga aatttcaaga gtgacaaaaa gcccttgcca gagtcttaaa
    16201 agcgtatcgg tatttaaaag ttcaagcatg aagcaacctt ttttcaaact ttagcaaaat
    16261 aaaagacaaa ggcaaaataa tgcataaata tcccataaac aacaaaaaca atagctcatc
    16321 tgtcttatag gttaaggaat ttaaactctt cattaaattc accaaatctg gcaaggcaat
    16381 aatactaacg actgaagttt ctttgattaa aaatataata ttagcactaa tacttggcat
    16441 agaaatagcc aaagcttgcg gcaaaatcac ataacgcaaa tttccaaatt ttgaaaaacc
    16501 caaagaaagt cccgcttcaa actgctgttt tcttatggct tcaaatcccg ctcttaaact
    16561 ttcagccata taagaacctc ctaaaaaact aagtcctact atagcacaag caaaagaagg
    16621 ccttaaagtt tcttctacgc ttaagcaaat caaatcaagc ggtggaattt gctctaaatg
    16681 tatattaaat ttaggtaaag cataatataa gaaaaaaagt tgaattaata aaggcgtatt
    16741 tcttgaaaac tctatataaa gcttgcaaat attttctaaa atttttattt taaaataact
    16801 cattaaaata caaaacaaac ctattatcaa agaaaaaata attccaaaaa agcttagttt
    16861 tatcgtaagc caagcagccg ttaaaaaagc aggagcttga gctaatataa aatcaaaatc
    16921 cattctctac cttaaatttt accaaagttc tttcatgatc atatctttat ttaaaatttc
    16981 aattctacct ttttttgtat caataagttc tgaaatttta a
//
LOCUS       DARBBO010000029        16494 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.029, whole genome shotgun sequence.
ACCESSION   DARBBO010000029 DARBBO010000000
VERSION     DARBBO010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16494
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.029"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..284
                     /locus_tag="SB854_000768"
     CDS             <1..284
                     /locus_tag="SB854_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEG0956784.1"
                     /translation="LDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKLLSKDWKNLSKEIFNDKK"
     gene            complement(521..1717)
                     /locus_tag="SB854_000769"
     CDS             complement(521..1717)
                     /locus_tag="SB854_000769"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEG0956785.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            1857..3080
                     /gene="sstT"
                     /locus_tag="SB854_000770"
     CDS             1857..3080
                     /gene="sstT"
                     /locus_tag="SB854_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HEG0956786.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIALGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFFASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSDIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAVVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            3090..3977
                     /locus_tag="SB854_000771"
     CDS             3090..3977
                     /locus_tag="SB854_000771"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEG0956787.1"
                     /translation="MRHLITTKDFNKVEIMELFKEASDFLDEKPRTFLEGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGNVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSNERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            3981..5702
                     /locus_tag="SB854_000772"
     CDS             3981..5702
                     /locus_tag="SB854_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEG0956788.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYTLNAN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSREFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDENRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFDQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTNKRRDLFTLAHELGHTIHQKLSYNVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            5696..6133
                     /locus_tag="SB854_000773"
     CDS             5696..6133
                     /locus_tag="SB854_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956789.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQVENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            6130..8205
                     /locus_tag="SB854_000774"
     CDS             6130..8205
                     /locus_tag="SB854_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEG0956790.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAASVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLSGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPEASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVAITRAKKFLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            8202..9020
                     /gene="truB"
                     /locus_tag="SB854_000775"
     CDS             8202..9020
                     /gene="truB"
                     /locus_tag="SB854_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEG0956791.1"
                     /translation="MNKIFAAFKPKGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLANLKQII
                     NQMQGIISYTPPQFSAKRINGTRAYELAKKGIEVNLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYINLKPNF
                     IKDLNKLENGAKIFVEELEFHDEGDYYIETEKYFSIINIKENTVKYLLNKVEKC"
     gene            9014..9241
                     /gene="csrA"
                     /locus_tag="SB854_000776"
     CDS             9014..9241
                     /gene="csrA"
                     /locus_tag="SB854_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HEG0956792.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            9238..10005
                     /locus_tag="SB854_000777"
     CDS             9238..10005
                     /locus_tag="SB854_000777"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEG0956793.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDVFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSRRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLINETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSSCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDRGIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            10002..10454
                     /gene="smpB"
                     /locus_tag="SB854_000778"
     CDS             10002..10454
                     /gene="smpB"
                     /locus_tag="SB854_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEG0956794.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGTRKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEARAAMKNYK"
     gene            10465..11067
                     /locus_tag="SB854_000779"
     CDS             10465..11067
                     /locus_tag="SB854_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG0956795.1"
                     /translation="MKKISALFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFAGDYGAYYFLSNGSSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNTPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            11067..11357
                     /locus_tag="SB854_000780"
     CDS             11067..11357
                     /locus_tag="SB854_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HEG0956796.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVMDAAKLANFPLQAKVEEE"
     gene            11354..13483
                     /locus_tag="SB854_000781"
     CDS             11354..13483
                     /locus_tag="SB854_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG0956797.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLNKIQELQNHENIQNLNNHTSDLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILVGEAGVGKTAIVEGLALAIAEKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILSELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDSAIDLIDELGASFALNPRAKKNAN
                     LKDLENVLAKMTHHHKMFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKALAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDAIL
                     VKIIEKELDEISKNLNNIKLSVDDKAKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNEKLEFIF"
     gene            13458..14105
                     /locus_tag="SB854_000782"
     CDS             13458..14105
                     /locus_tag="SB854_000782"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HEG0956798.1"
                     /translation="MKSSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(14127..15416)
                     /gene="cetZ"
                     /locus_tag="SB854_000783"
     CDS             complement(14127..15416)
                     /gene="cetZ"
                     /locus_tag="SB854_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HEG0956799.1"
                     /translation="MFGAKKNNTKIIEQLEKKCNGLGDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGHVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLCLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(15497..16123)
                     /locus_tag="SB854_000784"
     CDS             complement(15497..16123)
                     /locus_tag="SB854_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEG0956800.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDCGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIVAMGFKMIIVGLKDIFNL"
     gene            complement(16152..16463)
                     /locus_tag="SB854_000785"
     CDS             complement(16152..16463)
                     /locus_tag="SB854_000785"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004277567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HEG0956801.1"
                     /translation="MLNKGTEAPFSGKYNDFYEKGIYQCKQCGASLYKSEDKFKSGCG
                     WPSFDDEIKGAVKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKNVRHCVNSISLD
                     L"
BASE COUNT         6191 a         2500 c         2406 g         5397 t
ORIGIN      
        1 aattagataa tcaaattatc acaaatgcaa tttgttatga agctaccaaa gaacaaaact
       61 atcaaaattc acaaattatt atagccctaa gcaacaatgc ttggtttaat aatagtagcg
      121 aatacaaact ccagcaactc ttaatgaaat tttatgcaag taaatatggg gttagtgttt
      181 atcatgctac aaatggcaaa gagaatatag ttatactccc taaaaagctt ttaagcaaag
      241 attggaaaaa tttatccaaa gaaatattta atgataaaaa ataatattaa aattttaatt
      301 ttaaagtaat ttaagttatt ttatattata attctgtcaa acaatatttt gacttagagg
      361 ggtttttacc ccaaagctaa attaatttag cttccttcct aacttttata tttatgaggg
      421 atattgaaaa atatccctct aagtcaaaaa ttaatataac tttattaatt ctttataatt
      481 atacaagcct tgtttaagct tgtataatat tgttattttt ttaaagtagc tttttaaact
      541 gttctagagc atcaagtttt tcccaaggat agtccttttg tcctacttgc ccacgagctg
      601 ctacatccgc ataaagaaaa gtttctttac ttggtttatc cagatgaaat ttatcacgga
      661 tccaatttgg cgttaaagag aaattttgca ttacaaaatc acttaaaaca tcgtcattta
      721 cactggtatt tgtgcccata caatccacgc ttaccgaagt aggttttgca acacctatag
      781 cataactaag ttgaactata cattttttag caagccctgc tgcaactatg tttttagcta
      841 accatctacc tgcataaagt ccacttctat caactttagt ataatctttg ctcgattgtg
      901 cgccaccacc tattggagaa taacctccaa aactatctac tataagtttt cttcctgtta
      961 aaccactatc atgtaaagaa gaatgattaa catatttacc agttggattg attaaaattc
     1021 tagtcttatt aggatcaaaa agttcttttg gtaaattact atctaagata agtttcatca
     1081 ctaaagatct taaatcttct attttcatac tttcaacaca aggtgcagaa actactatag
     1141 tatgaatact ttgcggttta caattttcaa aattcgcctt agtgccataa tctatagtca
     1201 cttgagtttt aatatccact ccaagttcat gtggatttgc ttttgcataa gcataaactc
     1261 tatcacatag cattcttgca taactaatag ctgctggcat atattcctca gcttcacaac
     1321 ttgcaaaacc aaacataatg ccttgatcac ctgctcctgt ttcgccatct tcttgatcga
     1381 caccttggtt gatatcaggg ctttgttcat ttaaaaacac cataacatca acctcatcag
     1441 gatgtaaaca ctgctctttg ctaaaatggc ctgctccgtc ataaccaatg ttttttaaaa
     1501 catctttaac taaattatcg taatcagctt tactaagttt gtgatttgac ttaacttcgc
     1561 ctcctatcac aaccttattt cctgcgacaa aaacctcact cgccaccctt gaatttttgt
     1621 catttttcaa gagtatatcc actatcgtat cagcgattat atcagcgcac ttgtctggat
     1681 gacctgcact tacgacttct gaagtgaata gatacataaa aagtcctttc atttaaaatg
     1741 aaccacaatt atatccaaat aaacttatca aagcttgata aattaaaaat tctctaaaat
     1801 taagcaaaag ttagttaaaa tcaacttttg atataaaaaa tatttaaaag gtttttatgt
     1861 tttctaaaat cattcaaagc tacgctaaag gcaacctcat agttcaaatt tgcataggta
     1921 tagcactagg aatacttata ggcattagct ctaaagaaat atctgaaatt gcaaatttac
     1981 ttggaatact ttttacaagt gccttaaaag ctatcgctcc tatgcttgtt tttattttaa
     2041 ttttaacctc aatttgcact aaagattttt ctcaaagtgg tgctaagatc aaaaatatta
     2101 tcattttata tatagtaggc accttttttg cttcagcttg tgcagttctt gctaattttt
     2161 tcttccctgt aaagcttgtt ttagatggag ttcaaactgc cacaaactca tctccaaccc
     2221 acatgagtga tattttcaaa gatcttttat ttaaaattgt cgataatccc ataaatgctc
     2281 tttcaagcgg aaattattta ggaattttaa cttgggcaat agctggaggt atagcattaa
     2341 aacactgttc taacgaagca aaacaagttt ttatagatat caatgaaggg gttttaaaaa
     2401 tcgttaaatt tgtagtaaaa cttgcccctt ttggaatttt tggacttgtg gctaattctg
     2461 tagcacaaac aggagcacaa ggtttgctaa gttatgtaaa acttttaatt ttacttgtag
     2521 ctactatgct ttttgttact tttgttatca atgccttaat agtctttttt tatacaagaa
     2581 aaaatccttt tcctttaatt tttatctgct taaggcacag tgcatttttt gcctttttta
     2641 caagaagttc agcggcaaat attcctgtaa atatggcact ttgcgctaaa cttggcatag
     2701 ataaagaatt ttatggcatt tctatacctt taggagctac tatcaacatg gcaggagcag
     2761 tagttactat agctatttta agtcttactg cagccaatac cgttggtata gaaatcagtc
     2821 ttttacaagc ctttttatta agcattattg ccacctttgc agcttgtggg gctagcggag
     2881 ttgcgggcgg atctttactg cttatacctt tggcttgttc tttatttaat atagactatg
     2941 atattgctat gaaggtagtt gccataggtt ttattatagg ggttattcaa gatagtgttg
     3001 aaactgcttt aaatagttct acagatgttc tttttacagc aatttgttct aaaaatgaat
     3061 taaattacaa tatcaaataa ggtaaaaaca tgcgtcatct catcactaca aaggatttta
     3121 ataaagtcga aattatggag ctttttaaag aagcaagtga tttcttagat gaaaaaccta
     3181 ggacttttct tgaaggaaaa agcatcacga caattttttt tgaaaactct acacgcaccc
     3241 tttcatcttt tgaaagcgct gcaagaagat taggtgctag ggttttacgc cttgatgttt
     3301 caagatcaag ctctagcaaa ggagaaactc tttatgatac tgctgctaat ttagatgcca
     3361 tgagtcctaa tgctattgtt gtaagacacg caaactcagg agttcctttg atattagcaa
     3421 agcatatgca ttgtccagtt gttaatggag gagatggaaa acacgcccat cctacccaag
     3481 ctttactcga tttgtttacg atttataatc attttcaagg taatgttgaa ggtaagaaaa
     3541 tttgcatcgt aggtgatatt aaaaactctc gtgtagcagc gtccaatata gagcttttaa
     3601 gtagatttaa tcttgatatt accctagtag ctccaccaca ttttatgcct aatacccatc
     3661 ttaaaaaaca ttataagctt gatgagaata tcatagcaaa ttcagatatt atcatgagtc
     3721 ttagaacaca aacagaaaga cataataaaa ccgtttatgc ttcacttaaa gactatgcaa
     3781 atgatttttg cattcaaaaa agcttagtaa aggataaaaa gcttatttta ctacatccag
     3841 gccctgtaaa tcgcaatatt gacataagcg atgaaatgat gagcaatgaa aggactttag
     3901 ttttaaaaca agttaaaaat ggagtggcta ttagaatggc tgttcttaaa aaactcatac
     3961 tagaaaatga aggataaaaa atgttagaat gggatttaag tgctttattt cacgataaag
     4021 aagcattgca aaattttaca caagaccaaa tccaacaaag tttaaatttt aaaaaaaact
     4081 atgaaaataa actttataca ttaaatgcta atgagttttt acaagcttta aaagattatg
     4141 aaaatttaaa tcaagccctt ggcaaaatca tgacttatgc ttatttgctt tttgctaaaa
     4201 acactcaaaa tggttctttt tatgcacaat acgaagaaga atgcaaaaaa atagaagaaa
     4261 atttactctt tttcgagctt gaattttgcg agttagctcc tgagaaaagt cgagaattta
     4321 caactttttg caaagattat gatttttatc tttctaattt attgcaaaac aaacgctata
     4381 atcttagcaa aaacgaagaa cgcattatgc tttatctttc caatacaggt gcaaatgctt
     4441 ttagtagact ttttgatgaa agtatgagtg ctttaaaaat cccttttgaa ggtaaaaaac
     4501 ttagcgaaga agaaattcta agcaaaatgt atgatgaaaa tagaaagata cgcaaaaaag
     4561 ctgctaaaaa attcagtaaa gtcttacaaa aaaatagcag acttttaagt tttattatca
     4621 atatgataaa aacagaaaga aaaaatataa gcttattaag aggttatgaa aatgctgaaa
     4681 tttcaagaca tatcagcaat caaatttcac aaaaaagcgt tgattctttg atagcaagtg
     4741 cgcaaaaaca ttttaactta gtatcgcaat tttacaaaag aaaaaaacaa attttaggct
     4801 atgatgagct taaagactat gacagatatg cacccatagg aaaagaagca agttttgatt
     4861 ttaaaacaag taaaaatatt gttttagagg catttcaagc tttttctcct caattttatg
     4921 atatagcaaa aaatgctttt gatcaaggtt ggattgatgt ttatccgcaa gaaaataaac
     4981 aagggggtgc tttttcgcat tctgcaactt ctgatgcaca tccttttgtt ttattaaact
     5041 acaccaataa aagacgcgat ctttttacac ttgcacatga attaggacac actatccatc
     5101 aaaaactttc ttataatgta agctatttaa atcaaaatac acctttaacc accgcagaaa
     5161 cagcttcagt ttttgctgaa atgctcgtat ttgattttat taaagataag ttaaaaaaag
     5221 aagaactctt atctttatat gcaaataaaa tcgaagatat ttttgcaact ttttatagac
     5281 aaattaattt tacttgtttt gaaagacgct tacatgctca agaaaatgaa cttagcactg
     5341 aagaaatcaa taaaatttgg atggaagaat ctcaaaagat gtttcaagac agcgtaaaac
     5401 ttacaaaaaa ttatgcttct tggtggagtt atattcctca ttttatccat tctccttttt
     5461 actgctatgc ttatgcttat gcacaacttt tagttttagc tctttatgga ctttacaaaa
     5521 gtaaaaaatg tgaaaatttt aaagaacttt atatcaaaat gctttcttta ggtggaagcg
     5581 tgagtccaaa agaactagta ggaatgtttg gatttgatat agaagatgaa aatttttggg
     5641 aaataggcat aaaagaaatt caaaaactca tcaatgaatt catggagtta caatcatgct
     5701 agaaacaatc ttaaaaaatg aaaattttat ccataccatg caaaagcatt gttatgaagt
     5761 tatttcacac cttatagaag aaaatataga attttccata gttgcaaata caaatttcat
     5821 agattttaac cctgaacttc ccaaagagct tgatattaaa caaaatcctt atgctctttt
     5881 tgctcttgga ggatacacct ttgaatccat acaactaaat aaagatttca ttcaatttca
     5941 cgcaggtttt ggaaatgatg attttgatag ttttgtaaag gttgatttag gagctatcac
     6001 gcaaattcaa gtagaaaata gcattttatt cgttaatttt agtctttata aacgtgaaga
     6061 tagcaaaaat ttacaaaaat ctaaaaatat atttttaaat aatccaaaaa ataaagatat
     6121 tttcaaaaaa tgaatctatt tgaagattta aatgatagtc aaaaacaagc ggtaagccac
     6181 attgatggag ccatgcttat cctagcaggc gcaggtagtg gaaaaaccaa aactatcacc
     6241 actcgtcttg cttatcttat cggtgaagta ggcatcccct cacataacac tcttactctt
     6301 acttttacaa ataaagcagc tagtgttatg cgtcatagag cattaaattt tctacaaggc
     6361 aatcacaatc ctttgctttg cacctttcat aaatttggac ttttattttt aaaactccat
     6421 tttgaaagat tggagcgtaa aaatagtttt attgttatcg atacagatga tacaaaaaaa
     6481 ataattaaag acttaatcca tgataaaaac aaagataatg tctatgatat tatccaatac
     6541 atatcttatt gcaaaaatga aggcaaaaga gtaagcaatg tctttgaaga tttaaattta
     6601 ctaaaagaac ataattttga aaaatatcaa aatgaataca aatttgccaa ctattaccgt
     6661 gcttatgaag aatacttatt aaaacaaaat tttgtagatt ttgatgatct tttattgcta
     6721 agcaatctca ttttagaaaa tgatataaat tttgccaaag aacaaagctt actttataat
     6781 tacattacag ttgatgagta tcaagatact aataccttgc aatataaaat tctaaaaaat
     6841 ctatgttgta tgcatgaaaa tatcacagtt gttggtgatg atgatcaaag tatttatagt
     6901 tggcgtggag caaaaattga aaatatttta aattttcaaa atgattttaa aaatgttaaa
     6961 cttgtaaaac ttgaacaaaa ctatcgttca gtagggacta ttttacaagc agcaaataat
     7021 ctcatatctc acaatgagca acgacttgga aaaactttaa tctgcactaa agatactggg
     7081 gaaaatatta aaatattaaa aaacgaaaac gaaaaagatg aaggtttata tatcgctcaa
     7141 gaagtgaaaa aattgctaaa ttctggagta gaagctaaag agatcgccat tttatttcga
     7201 gttaatgcac tatcaagagc aatagaagaa gcatttatga agaaacaaat ttcttataaa
     7261 ctacttagtg gtatgcgttt ttatgagaga ttagaaataa aagatttaat ctcgtatctt
     7321 agacttatct taaatccaag cgatgatttg tcgtttaaac gtattattaa tcgccccaaa
     7381 agatccatag gagaaaaagc cctaaaaaat ttagaagaat atgcaaaaaa acgtcaaatt
     7441 tcactttttg atgccctatg cgaaagcgat ggtggtgtag gaattttaac aacaaaaaaa
     7501 gcacaaaatg aagcaaatat ttttatacaa aatattcaca ctctaaaaag ctacgataat
     7561 gcaaaaaagg tttttgacaa tatagaagaa ttatttaaaa tcaaagatta tttttcagag
     7621 caagatgatg gagatgaaag aatcagaaat cttgatgagt tttatgctaa tctaagagaa
     7681 aaactcaaag aagatcccga agcttcttta gaagatctac ttagtgaaat ttctttatta
     7741 agtgatcaag ataatttaga tgaagaatgt gtttgcttga tgagtattca tgctagcaaa
     7801 ggtttggaat ttgattatgt ttttataata ggctttgatg aaggattttt tcctttaaat
     7861 agcgaagaaa atctcgaaga agaacgccgt cttgcttatg ttgccatcac tcgcgccaag
     7921 aaatttctca caataagtgt tgcaaattct cgtttttatc atggttcaag agcaaatatc
     7981 aatcctagtc gcttcttaga agaaagtaaa ttaatcaatg aaaaatcaaa aaatcaaaat
     8041 atacaaaaaa ctagtttttg caaaggagat ctagttaaac ataaaatttt tggcattggc
     8101 agggttgttg aagttaataa aagcggaaaa gaggaaaagc ttaatattaa ttttggtggt
     8161 ataatgcgtg taatcatggc aagctttgtg gaaaaagcag tatgaacaag atctttgcag
     8221 cctttaaacc aaagggtttg agttctaatg cctttttaag tactttaaag aaaaaatata
     8281 aaaataaaaa agcaggatat tctggcactc ttgatccttt cgccaaaggg gttttaatcg
     8341 ttgcatttgg acaatacaca aaacttttcc gttttttaaa aaaaactcca aaaacctata
     8401 aagctacttt atggcttgga gtttactcct taagtcttga tgatcaaaat ataaaagaaa
     8461 ttcaaaatat aaaagaattt gatcttgcaa atttaaaaca aatcattaat caaatgcaag
     8521 gaattatctc ctatacacca ccgcaattta gcgccaaaag aatcaatgga actcgcgcct
     8581 atgaacttgc aaaaaaaggt atagaagtaa atttaaaacc ttgtcaaatg gaagtatttg
     8641 attgcaagat tttaagctat aatcatcctt ttttaaatat cgaaatcaca gtcagtgaag
     8701 gtgcttatat aagatcttat tgtgaacttt ttgctagaaa actaggtatt aatgcgactt
     8761 taagctcttt agagcgtatt aaagaaggca aatttgttta taataatgag aaaagcttaa
     8821 atgtgttaaa atacattaac ctaaagccaa attttatcaa ggatttaaat aaactcgaaa
     8881 atggtgctaa aatttttgtc gaagaattag aatttcatga tgaaggagat tattatattg
     8941 aaacagaaaa atattttagc ataattaata ttaaagaaaa tacagtaaaa tatcttctaa
     9001 ataaggttga aaaatgttaa tattatcaag aaaagaaaat gaaagtataa ttatcggaga
     9061 aggtatagaa atcaaagtcg ttcaaacagg gaaaggatat gccaaaatag gcatagaagc
     9121 tccaaaatcc cttatgatac ttagaaaaga acttgttcaa caagtaaagg atgaaaattt
     9181 gcattctgtt gttcagaatg atattaaact tgatgactta agcaaaaaac taatcaaatg
     9241 aaagcttacg ctaaagcaaa tattttttta aaacttaccg gttttgactc aagaaaatat
     9301 catcttttag aatcacgatt tatactttta aaagatgttt ttgatgagct tgagcttgtt
     9361 gacaaagaat cagattctaa aaaagaattt gaaatcatta gtaattttaa atgcgaaaat
     9421 aatattattc aaaaggctta tttgctactt tctagaagat ataataacga attaaaagaa
     9481 ttatttagca aaaaaagtct aaaactcaca aaaaatatcc cagtatgtgc tgggcttggt
     9541 ggtggaagta gcgattgtgc gagtttttta ctactaataa atgaaaccct aaatttaaaa
     9601 ttaaacctac aagaacttat aaatttaagc atacaactag gaagtgatat tgcctttttt
     9661 ttaagtggct ttcactctgc taatgtaagt agctgtggcg aaattataga agaatttgaa
     9721 gatgacatac ctaatttaaa atggactttt ccacaaatat cttgccaaac taaagctgtt
     9781 tatgatgaat ttgatagagg aatatttgac tttcaaaaaa acaataatca agcgcaaatc
     9841 tacaaaaaac tcagcacaaa agagttgtta caaaacttta aaaacaaaga attaaatgat
     9901 ttatttactc cttgtgcaac tttatatcct aaaatgaagt cttacttgca agaagatttt
     9961 tttctaagcg gtagcggtag tagtgttttt aaggttgatc gatgaaaatt attgcgagaa
    10021 ataaaaaagc tttatttgat tatagcatca tagaacgctt tgaagccgga attgtcctta
    10081 aaggaagtga agttgtagcc ttaagagcag gaagagcaaa tcttaaagac tcttttgttc
    10141 gcattataaa aaatgagatt tttttactta attctcatat ttcattgctt catactacac
    10201 attctttcta taaacacgaa gaaagaggta ctagaaagct tttaatgcat agaaagcaaa
    10261 ttgataaatt attaggtaaa gtaagtatag aaggatatac tatcgttgca ttagatcttt
    10321 attttaacac aaaaaataaa gtaaaagcta cccttgcttt agctaaaggg aaaaatttgc
    10381 acgacaagcg tgaaacttta aagaaaaagc aagccgattt agaagctaga gctgctatga
    10441 aaaattacaa ataaaggaaa ataaatgaaa aaaatttcag ccctattttt aataagttta
    10501 gcattttttc ttaatgcttg ctccaaggaa gaagaaattc aaaatgattt tatgtttgaa
    10561 gagtatcaca aaggagataa aatagtctta aatagtgtaa atggtggaag caaaacttta
    10621 ataagaacag ataaaggttt tgtggtggaa ggagaggaag gaaaagttct aatgtttgat
    10681 ttttttggca ctttttgcac cccatgtaaa gaagaagctt tagatcttag caaactttgg
    10741 aaaaataatt ctagcaaatt tatcattata ggacttacac attttgaaga tgttagcgat
    10801 gaaacagtta aaaaattcgc gggtgattat ggtgcttact attttctaag caatggcagc
    10861 tctaatgatc gtattattgc tcaaatttta aaagatatag actatcaaaa tatggagcaa
    10921 cttcctttta aagttgtttt aaaaaatgga atttatcaaa aaataagcga ttactggaat
    10981 aataatactc caacaaattt ttatcttggt aaaattccaa cagaactcat gcaagaagat
    11041 ttaaataaaa tctacaaagg aaaataatgc caaaaaccca aactctagag caaacaaaac
    11101 ttagtgaacc aaaaatgtat aaagttatac tcttaaatga tgatgtaaca accatggatt
    11161 ttgtcataga aattttgatg aatatttttc atcaaaacct tgagaaagca agtcaaacaa
    11221 tgttagaaat tcatcacaat ggttctggaa tttgtggcat ttacacccag gaaatagctc
    11281 tttcaaaaca aaaaaaagtt atggatgcgg ctaaacttgc taattttcca ctacaagcaa
    11341 aggtggaaga agaatgaaat accaagaaaa tttacaaaaa tatcttgata atgccaaaaa
    11401 tctaagctta ataaatcacc atgaatttgt tacctgtgag catgtactgt ttgcattact
    11461 aaaactaagc actgatttta aggatatatt tgaagaattt tcagatggag atcttgaact
    11521 tctagaaact gaattaaaaa attacatttc tcaaaacaat caagttatta aacaagaaat
    11581 agaacctaca atatctgttg ttttagatga aatcttactt tcatctaaaa ataaaaataa
    11641 tgaaattaaa attatagatt ttttagaaaa gctcatacag gattcaagaa gttattctag
    11701 ctatctctta aaaaaacaca acataaatct taacaaaatt caagaacttc aaaatcatga
    11761 aaatatacaa aatttaaaca accacacaag tgatttaaca cttttagctc aaaatggcaa
    11821 aattgatcct ttaataggaa gaaaatttga acttgaaaga atgatgcaaa ttctttcacg
    11881 tcgcaagaaa aataatccta ttttagtagg agaagcagga gttggaaaaa cagccattgt
    11941 agagggatta gcattggcta ttgcggaaaa aaaggtgcct aaaaacttac aaaatgcaaa
    12001 aatttttagt cttgatatgg ctagtatact tgcgggaaca aaataccgtg gagattttga
    12061 gaaaagaatt aaagaaattt taagtgaact tgagaaaata cccaatgcta ttttatttat
    12121 tgatgaaatt cacactatag taggagctgg aagcacagga gaatctcata ctgatttttc
    12181 caatctttta aaaccagctc taagcaatgg aactttaaaa tgcataggtg caacaacttt
    12241 tatggaatat aaaaatactt ttgataaaaa taaaccccta agtcgccgtt ttgctaaaat
    12301 aaatgtagat gaaccaagcc aagaagaaag cttgcaaatt cttaaaggat taaaaaacaa
    12361 atatgaagaa tttcatcata tcaaattaaa cgatgaaatt cttcaatatg ctgtaatttg
    12421 gggtaaaaaa ttttttaatg ataaattttt acctgatagc gctatagatc tgatcgatga
    12481 acttggcgct tcttttgctt taaatccaag agctaaaaaa aatgccaatt taaaagattt
    12541 agaaaatgtt ttagcaaaaa tgacccacca tcacaaaatg tttgaattcg atcaaaataa
    12601 agctttaatg aacttaaaaa caaatttaaa agcaaaaatt tttggccaag atgaagttat
    12661 agatagcctt gtttcatcac ttaagcaaag tttcgcagga tttaaaaatt ccaatacacc
    12721 acgcggagtg tttttgttta ctggatcaag tggagttgga aaaacagaac tttgcaaagc
    12781 tttagctgaa tttttaggtt taaatttaga acgctttgat atgagtgaat atgcagaaaa
    12841 acatgctata agtaaactaa taggatctcc agctggatat ataggttttg aagagggtgg
    12901 acttttaagc aatgctattc gcaaaaatcc tttcagtctt gttctttttg acgaaataga
    12961 aaaggctcat cctgatttaa gcaatacctt tttacagatt tttgacaatg ctgaactcac
    13021 cgacaatagt ggtcttaaag tagattttaa aaatacaatc attattatga catctaatct
    13081 aggacttaaa gaaagcaatg agcttggttt tttaagtaaa aatgaagaaa aaagtaatcg
    13141 tgctatcaaa gacttttttg ctccagaatt tattaatcgc attgataaaa ttttacattt
    13201 taatgattta aacgatgcta tacttgttaa aattatcgaa aaagaacttg acgaaatttc
    13261 taaaaattta aataatataa aattatcagt ggatgataaa gctaaaattt atttagctaa
    13321 aaaagcctat aataaagaat ttggagtaag gcttttaaaa cgcataattt ctgaggaaat
    13381 aggagaaaaa atcagtgatg aaattttatt tggaaagctt aaaaaaggtg gtatagctaa
    13441 aatcaaactt ggtaaaaatg aaaagctcga atttatattc taaattactc aatgcgccta
    13501 aaaatgctcc tgtattttta agtcaaaatt tagaagctga ttttattgta aaagcttata
    13561 cttttggtct attcccatgg acaagtaaac ctgtaacttg gtggtgtcca gatcctagat
    13621 gcattttaat tccaaatcaa attcacatcc aaaaaaatat gaaaaaattt attaatctct
    13681 atcaaattaa acttgattat gattttttaa aattaattac attatgtcgc gatacacgct
    13741 ctcaaagctg gatagatgat gaatttatta ccacttatta taagttattt acccaaggct
    13801 atgcgcatag ccttgaactt tatgaaaata atgaacttat aggtggaatt tatggtttaa
    13861 ttttaggcaa ggttttcttt ggtgaaagca tggtaagcat taaaaaaaat gcatctaaag
    13921 ttgccatgat taaactttgt gatttattaa aaccttatga ttttatcata gattgtcaag
    13981 tttataacca acatttagaa tttatgggtg ctcataatat ttctaggaaa gaatttttaa
    14041 atattttaaa agaaaaatgc aatcaagaaa gtggttttaa aaattttaaa gatttaatta
    14101 cttaaaaata agcgtgaaaa tcacgcttat gacatcgctt tagcaacttc agcagagctt
    14161 tcacgaattt tctccataca ctctcttgct tcttttgcaa gttcaacact ctgattaaca
    14221 tcctctaaac cgcttttaat actctcaacc acttgtgatg taacattgcg aatagaatta
    14281 atcgtagtgg taatttcatt aaccgaatgc cctgttcttt cagctaaatt tcttacttca
    14341 tcagcaacaa cagcaaaacc tctaccatgt tcaccagcac gtgctgcctc aatagcagca
    14401 tttaaagcaa gcagattagt ctgatcagca atatcactaa tagtttgaat aatagattta
    14461 atttcatctg attgttgatt taatgaggaa acaagatttg aactttgaga catcatatca
    14521 gcaatattct gaacatttga aacagtgttt tcaattacac gatctccatc ttgagtaaga
    14581 ttatcatttt tttctgcaag ttcgcttatg aggcaaagtt tttcttgatc ttttttaact
    14641 tgttcgctta tatctgtagc aaatttaata accttgtaaa tttttccatc atcattttta
    14701 accggattat aacttgcttc aaggtatact tttttattat ttcttccgta tcttatatat
    14761 ttacctgatt gaaatttgcc ctctcttaaa tcttcccaaa attgaacata gtccttagag
    14821 tgtctataat tagaatcaca gaacatgcta tgatgctttc ctttaatctc atcaatatta
    14881 aaatccatag ttcttaaaaa attttcatta gccgtaataa tagtcccatc aggtttaaat
    14941 tcaataatag ccatagaacg attagcagca gcaatagtat ttctaagatc aagcatttca
    15001 taatgtcttt gagttatatc attggcaaat ttaataattt tataaacatg accattatta
    15061 tcactaattg gaagataatt tgcttctaaa taaacatcta tccctccctt agctatacgt
    15121 ctaaaaagac cacttctagc ttttccatct cttaaatctt tccaaaaatc actatatgct
    15181 gaagaattaa caacttcagg caaacaaaac atactatgat gcttaccctt gatctctgaa
    15241 agggagtatt tcatagttgt taaaaaattt tgatttgcct ctaaaataac gccatcggta
    15301 gtaaattcaa ttaccgccat ggtattccca atagatctta aaatatctcc taaaccatta
    15361 catttttttt caagttgttc aattatttta gtattatttt tcttagcacc aaacataaaa
    15421 ctcacctttt taataataaa ttattttaaa attatatcat atttatatag tattatttac
    15481 ttaaaattat attaatttat aagttaaata tatcctttaa acctacaata atcatcttaa
    15541 accccatagc aacaataaat acttgtgcta tacgagaaaa aacatgtaaa atcaattttc
    15601 caactatttt ttctatagta gctgcaaaat gaaaaagtat aaacataaaa ataaaagcta
    15661 tcattactcc accaagagca acatcaagcc cacaatcttc ggctataaca ataacgctag
    15721 ctaaagttcc aggcccaaca agcataggaa atgccatagg tattaaactc tgtcttaaaa
    15781 tttccttatc atccatatct tgataagaac taaaatcctt agttgcaatt tttgttgaaa
    15841 aaagtaaatt tttaatagcc attataataa gaaccaaacc accagaaacc cttaaatcat
    15901 ccaatgaaac tctaaaaata tagttcataa ataaaggtcc tgataataaa aacaccaaaa
    15961 ctatagtaaa agctgtatag agaatagttc taaaaagttt ttttcgaagc attaaaggca
    16021 atccatcact catagccaaa aattgagtta aattaccaaa aggatttaat atagcaagta
    16081 aagtaattgc agcaaaaaac atcaaataaa gctcagaacc catactagaa aacactatca
    16141 atccttagtt tttacaaatc caaagaaata gaatttacac aatgtcttac atttttagca
    16201 gaaaatcctt ctccttcaaa aacatgacct aaatgtccat tgcaatttgc acatacaatc
    16261 tcggttctaa tcccatcttt atcaggaatt cttttaacag ccccttttat ttcatcatca
    16321 aagctaggcc atccacaacc tgatttaaat ttatcttcgg atttataaag cgaagctcca
    16381 cattgcttgc attgatagat tcctttttca taaaaatcat tatatttccc actaaaagga
    16441 gcttctgttc ctttatttaa aattactttt ttttcttctt catttaattc tttc
//
LOCUS       DARBBO010000030        16432 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.030, whole genome shotgun sequence.
ACCESSION   DARBBO010000030 DARBBO010000000
VERSION     DARBBO010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16432
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.030"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            42..209
                     /locus_tag="SB854_000786"
     CDS             42..209
                     /locus_tag="SB854_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraM"
                     /protein_id="HEG0956802.1"
                     /translation="MYTGKTKFLMKDALFLENLAQQININNKYFFSMASLCSKAKNHL
                     EMKGFNIYVAL"
     gene            196..825
                     /locus_tag="SB854_000787"
     CDS             196..825
                     /locus_tag="SB854_000787"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEG0956803.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLSIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            944..2290
                     /locus_tag="SB854_000788"
     CDS             944..2290
                     /locus_tag="SB854_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEG0956804.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYIKFFNKTKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFIDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLVCNYLGMEFNEDKFSSELL"
     gene            2339..3790
                     /gene="pyk"
                     /locus_tag="SB854_000789"
     CDS             2339..3790
                     /gene="pyk"
                     /locus_tag="SB854_000789"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEG0956805.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRKVAKELHIRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVVNIDDQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVDIMCQTI
                     IETEKRYPYNKFNDFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIAR
                     YRPNIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDED
                     KCYLLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            3888..4523
                     /locus_tag="SB854_000790"
     CDS             3888..4523
                     /locus_tag="SB854_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956806.1"
                     /translation="MQVNTFSNIASMARTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSSKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQNTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(4554..7016)
                     /gene="pflB"
                     /locus_tag="SB854_000791"
     CDS             complement(4554..7016)
                     /gene="pflB"
                     /locus_tag="SB854_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HEG0956807.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSESGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVIMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDV
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDTYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDST
                     DAGIYLNISKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKFKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAVGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(7026..8261)
                     /gene="serS"
                     /locus_tag="SB854_000792"
     CDS             complement(7026..8261)
                     /gene="serS"
                     /locus_tag="SB854_000792"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEG0956808.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKIA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDENENVELKKVLNPPSFDFTPKEHFELGESLNWLDFMRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDVLKKYF"
     gene            complement(8272..9231)
                     /gene="trpS"
                     /locus_tag="SB854_000793"
     CDS             complement(8272..9231)
                     /gene="trpS"
                     /locus_tag="SB854_000793"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEG0956809.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTRIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPEARVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDHENCNIFKIAKLFLDESGQKELQIRYEKGGEGYGHFKIYLNELVNAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(9228..9725)
                     /locus_tag="SB854_000794"
     CDS             complement(9228..9725)
                     /locus_tag="SB854_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEG0956810.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKAD
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(9712..11094)
                     /gene="der"
                     /locus_tag="SB854_000795"
     CDS             complement(9712..11094)
                     /gene="der"
                     /locus_tag="SB854_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEG0956811.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVINKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEYYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            11196..12128
                     /locus_tag="SB854_000796"
     CDS             11196..12128
                     /locus_tag="SB854_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG0956812.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIVYLLKRSKAHKEGGYFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLTAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDNLPSTMVFLGIIGIIFGGLILVKNKGKK"
     gene            12125..12940
                     /gene="kdsA"
                     /locus_tag="SB854_000797"
     CDS             12125..12940
                     /gene="kdsA"
                     /locus_tag="SB854_000797"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HEG0956813.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKINIKKGQFLNPSDIKYSVKKVLQTRGIEDEGYEAAQRNGVF
                     VAERGASFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            12937..13401
                     /locus_tag="SB854_000798"
     CDS             12937..13401
                     /locus_tag="SB854_000798"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEG0956814.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            13401..13799
                     /gene="nusB"
                     /locus_tag="SB854_000799"
     CDS             13401..13799
                     /gene="nusB"
                     /locus_tag="SB854_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEG0956815.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYNGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            13796..14635
                     /gene="pyrF"
                     /locus_tag="SB854_000800"
     CDS             13796..14635
                     /gene="pyrF"
                     /locus_tag="SB854_000800"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEG0956816.1"
                     /translation="MKLCVALDLSTKEECLQLAKELKNLDIWLKVGLRAYLRDGFKFI
                     EELKKVDDFKIFLDLKFHDIPNTMADACEEVSKLGVDMINIHASAGKIAIQEVMTRLS
                     KFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVCSVFESKK
                     IKEHTSSNFLTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAV
                     CEKILNKIHRKNISENDIEQNYEVIQQKEWDMCNHFEEWIKTQPDKEHALKEFYAKCG
                     IKY"
     gene            14632..15417
                     /locus_tag="SB854_000801"
     CDS             14632..15417
                     /locus_tag="SB854_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956817.1"
                     /translation="MNYQQLECDYFNLYNQFLSVDFQISLFEKDHKGLIKDFIFFYYQ
                     ILKQKDLSYLLEVRNKISLKVYNYMQEHSTSPKDLSLICLRENKHIEFFQIFYKALAY
                     FVAFRKKLDGEQKIKNLISNINDCFGYHFLNSDFNNLQNFQKSDLFTLPEKHLKYFHF
                     AMIHLCFMVLNPLNFKDSNRHLDKAINYLVDGTFEIYELIFKEYFLLFSKDKELKDEL
                     RKLKKLEFKILMQETSKIKLLNHYKEFCEEIFYNIELEKITQN"
     gene            15473..16366
                     /gene="msrP"
                     /locus_tag="SB854_000802"
     CDS             15473..16366
                     /gene="msrP"
                     /locus_tag="SB854_000802"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HEG0956818.1"
                     /translation="MLITPEKLYKQRRNFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKRKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            16366..>16432
                     /locus_tag="SB854_000803"
     CDS             16366..>16432
                     /locus_tag="SB854_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HEG0956819.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGF"
BASE COUNT         5799 a         2619 c         2444 g         5570 t
ORIGIN      
        1 aaagttatat ttgtgctaaa gatcaaaata acattctttt tatgtataca ggaaaaacaa
       61 aatttttaat gaaagatgcc ttatttttag aaaatctagc acagcaaatt aacataaata
      121 acaaatattt ttttagtatg gcttctcttt gctctaaagc aaaaaatcat ctagaaatga
      181 aaggatttaa tatctatgtt gctctgtgat attgggaatt caaatgctaa tttcctagat
      241 gataacaaat attttactct tagtatagat cagtttttag aatttaaaaa tgaacaaaaa
      301 attttttata tcaatgtcaa tgaacatctc aaagaacatt taaaaaatca aaaaaatttt
      361 atcaatcttg aaccttattt tttatttgat acaatttatc aaggattagg aatcgatcgc
      421 atagcagctt gttatactat tgaagatggg gttgttgtag atgcaggtag tgctattaca
      481 attgatatta tttctaattc tatacatctt ggtggtttta tcttgccagg tattgcaaat
      541 tataaaaaaa tttatagcca tatttcaccg cgattaaaaa gtgaatttaa tactcaagtt
      601 agtcttgatg cattcccgca aaaaaccatg gatgctttaa gttatggtgt ttttaaagga
      661 atttacctac tgataaaaga tgccgctcaa aataaaaagc tttatttcac tggtggagat
      721 gggcaatttt tagcaaatta tttcgatcac gcaatttatg ataaactttt aatctttcga
      781 ggaatgaaaa agattataaa agaaaatccc aatttacttt attaaaaatg ttacaaaaat
      841 tctcattgat atcaaacctt aatgaaattt aactttttgt aaaacaaatt caattaaact
      901 tctatttaga aaaaagttta ttaaaataaa aaaaggaaaa acaatgagcc aacaagaatt
      961 tgatgtgctt gtcatcggag ctggaatttc aggagcagca ttattttacg agcttgcaag
     1021 atatacaaat attaaaaata ttgctttgat agaaaaatat aatacagctg caacattaaa
     1081 ttctaaggga acgagtaatt ctcaaaccat tcattgtgga gatattgaaa ccaattatac
     1141 tttagaaaaa gcgcgaaaag taaaaagaac agctgatatg atagttaaat atggactcat
     1201 gcaaaatgcg caaaataatt tcatgttttc tcatcaaaaa atggctctag ctgttggaga
     1261 tatagaatgt gattatatga aaaaacgcta tgaagaattt aaagaacttt atccttatat
     1321 aaaatttttc aataaaacaa aaatcaaaca aattgaaccc aaagttgttt taggagaaga
     1381 ttgcaatcaa gatagacctg aaaatatctg cgccatgggt gttgaaagtg gcgaggtttt
     1441 tacaactgta gattttggga aaatgagcat aaatctaata gaacaagcac aaaaacaaaa
     1501 taaaaatact ttcgttgcct ttaatcaaga aattattcac atagaaaaaa aagatgatat
     1561 ttttatatta aaaacctcaa atcatcaaga ataccatgcc aaaagcgtag ttgtcaatgc
     1621 tggggcgcac tctttatatt tagcacataa aatgaactta ggtatggata agtcttgttg
     1681 gcctgttgca ggaagttttt atttaaccaa acaaaaactt ttaaatggca aggtttatat
     1741 ggtgcaaaat cctaaacttc catttgcagc tcttcatgga gatcctgatt tgcttgctga
     1801 tatgaacact cgctttggac ctactgcact tgttattcca aaactagaac gttatcatgg
     1861 tctaaaatca gttccagaat tttttgaagc actaaaactt gataaaactg ttttaaaagt
     1921 aacttttaat atgtttaaag atgcaacaat tagaaattac atcttttata attatctttt
     1981 tgaactacct tttattgata aaagcttatt tgttaaagat gccaaaaaaa tagtcccaag
     2041 tcttaaagca agcgatattt attatgcaaa aggttttgga ggcgtaagac cgcaagttat
     2101 tgataaaact aaaggagaat taatgctagg tgaagcaagc atcacagaaa cccctggtat
     2161 tattttcaat atgactccaa gccctggagc aacaagttgt ttaggaaatg ctgaaagaga
     2221 tgcaaagctt gtatgtaatt atctaggaat ggaatttaac gaagataaat tttcttcaga
     2281 attattgtaa tcattttgtt tctattttta gctacaataa tttcaaaagg agtttaccat
     2341 gcttaaaaaa acaaaaattg tagccacagt aggtccagca agtgaaaagg aagaaattct
     2401 acgccaaatg attatcaatg gtgtaaatgt tttccgttta aacttttctc atggaacaca
     2461 tgagtatcat aaaaaaaact tagataccat aagaaaagta gctaaagaat tgcatattcg
     2521 tattggaatt ttacaagaca ttagtggtcc taaaattcgt acaggtgaac ttaaagaacc
     2581 atttgaatta aaaaagggtg atagacttga tttttatcgt gaaacaattt taggggagaa
     2641 gattgctcaa aatcattata aaatcagtat taatcaaaaa tctattttag atatgttaaa
     2701 aattgatgaa tatatttatc tatatgatgg atcaattcgt gctaaagtag taaacataga
     2761 tgatcaaaaa attgaaacca ttatagaaaa tgatggtttt ttaaactcaa ataaaggtat
     2821 taattttccg aatactaaaa tcaatattga tgttattaca caaaaagata aaaatgattt
     2881 actttggggt ataaaaaatg aagtagattt tttagcaata tctttcgtac aaaatgcgca
     2941 cgatattgat gaagttcgtg aaattttagc acaaaataac gcaaaaatat ctatttttgc
     3001 aaaaattgaa aaatttgatg cagtagaaaa tattgatgag attattaaat ctagcgatgg
     3061 tataatggtt gcaagaggag acttaggtat tgaggtacct tattataaag ttcctaatat
     3121 ccaaaaagaa attatacaaa aagcaaacaa tgcctctaag cctgttatta ctgcgactca
     3181 gatgcttttt tcattagcca aaagcaaaac cgccacaaga gctgaaattt cagatgttgc
     3241 aaatgctgtt ttagatggaa cagatgcagt aatgctaagt gaagaaagtg ccgttggtat
     3301 agatcctgca aacgctgttg atataatgtg ccaaactata atagaaacag aaaaacgcta
     3361 tccatataac aaatttaatg attttaatga ttttaatgat ttagacaata cagataaaat
     3421 catgcgttct tcagctcatc ttgcaacaga tcttaacgct gatgctattt tttctttaac
     3481 aagtagcgga aaatctgcta ttaagattgc gagatatcgt ccaaatatag aaatcatagc
     3541 agtagggcat tctgaaaaaa ccttaaactc tttaagtata gtttggggag ttaatcctgc
     3601 aatcttggtt aacaaaagta atgaacttac agaattatta aaagactctg taagatcaag
     3661 tgttgaaaaa ggttttatgg atgaagataa atgctatctt ctaactgcag gctttccaac
     3721 aggagtagaa ggtactagca atcttatccg cattctcaat aaagagcaaa ttgcttatta
     3781 tctacaataa aacattaaat tcctttgaaa ataaggaatt taatgtcctt ataaattttt
     3841 taagtcaaaa gtcgatataa attaaagcct cacacaaagg agcaaatatg caagtgaata
     3901 ctttttcaaa tatcgctagc atggcacgaa cacaagttag caataagaag gcagatgatg
     3961 ctaaggaaaa cacaaaagac aaaaatgttc aaagtgctaa ttctagcaag gatgtagata
     4021 aaaataccct tgaaaaatta aatgcacttg gtggaaaagg cattacacaa atttacctag
     4081 ttcagtttca acagcaaaca atgaatgctg taataggttc gagcaatgcc caaactggac
     4141 tagatagtct tttaaatggt gccaatttag atactgcgaa atctatactt acaaatattg
     4201 attttgcatc cttaggctac agtagcaaaa atccacttga tatgaataca gatgaacttc
     4261 aacaacttgt aagtgaagat ggtttttttg gagtggaaaa tacagccaat cgcatcgcgg
     4321 attttgttat taaaggcggt ggcgacgatg ttgaaaaatt gaaaaaaggt cttgaaggta
     4381 tgaaaaaagg atttgagcaa gcagaaaaaa tgtggggtgg agaacttcct caaatcagtc
     4441 aaaatacaat agatgcggca cttaaaaaag ttagcgatcg cattgatgaa ctaggcggaa
     4501 aaactctaga tcttcaagct taactaaaaa tgcttagaaa tttctaagca tttttagttg
     4561 ttattaatat caaaagtaaa aaattcactc ttaaaattat taggtaaagt tttatactga
     4621 gatatcgcag cttcatagtt ctttacttct tgatacaaca taccaagagc tgctttactc
     4681 tctttgttat ttttatctgt aagtttagaa agctgcaaaa gcgctatagc tgaatttgga
     4741 ttatttgcac ctacggctgc tacggctgct aaaaataaag ttttagtatc tttagctcca
     4801 taatcatcaa tcaaagaatt ataaagcgca taagcctcct cgtattgctg tgcaaaaata
     4861 tccaaataag ctaaagtttg taaaataccc tcatcttttg ctcctgaaac attaatcaac
     4921 tctttaaatt tctgtctttc taaatttaaa agccctgcaa tatgcattaa attaacataa
     4981 aattccctag ctatatttgg cccaccaaaa acactacgat aatcaagttt taaattttta
     5041 aaatgaattt gagcattttg agcatattct ttaatattta aatttgaatt taaagaatta
     5101 aaatacaaaa tatttgccaa aatatcttca ggcaactctg aacgcaattt agcaattttc
     5161 acatctactt gattattaag gttattattt ttagcaacaa tagcttcaaa aatcaaactc
     5221 aaaggcgtat ctttttttgt ttcatctaaa taaggaagca tagaaatata attattatta
     5281 actaaaaata acatactttt ttgcatatta gctttaaaat tagaatcagc agctatatta
     5341 tcaagaattt cattgtaaag tttagttgta tcaatatcaa ttaattttgc acaaaacata
     5401 gcaaaagcac ctgctaagta atttttagga ttaagatgat atgaacttga aaaatgctta
     5461 taagcaagtt cataattttg catttgggca taagttaaag ccaaattata atgtaaaata
     5521 ctatgttctg gataatcctt gataagtttt tgaaattctt ggttagcaag gcgtaacttc
     5581 tgatttaatg catagttaat aatattggca atttttacat tggtagatga aagagccttg
     5641 cttatattaa gataaattcc cgcatcagta ctatcatcaa cgaaatctgt aacattagct
     5701 tttttaatat ataaagcagc ctgcttacta tcaaaaacct gataaggtgc aaaataaaaa
     5761 agcaaatcga attgatcttt ttgttttttt agcaaatctt ttgaaaaaga attttgagca
     5821 actgctatat taaaaagatc cttatttaaa cgaacttgaa ttttataagt atctaaaatc
     5881 ttatatctat ctttatcgtt atcataagaa ttttgcaagc gcgctaacat atcttgataa
     5941 tttcctgttt taatatcaac caatgttaaa gccgccaaac tctgattaaa atctctttca
     6001 attttcatcg ctgtacttaa agcgacttta gctttagcat attctcctat tctagcgtat
     6061 aaaagaccta aagataaact agattcaaaa ttgccttgag aatttaattg ctgtatagcc
     6121 ttggaatcaa agtccatttt tgcataaatt ttagcagaca aatactttgc aacatcagaa
     6181 tacggctcca catctgttct ttgtaacatt tgtaaggcct cagggtaata tcctttgtaa
     6241 taattaatca agcttaaata ataatcatat aattttgatt ttccttcttt tggaagatac
     6301 acttgagcta aatcaatata atatctaaat ttttccttat cattaagctt taaagcacaa
     6361 acagcagcat tgatagcagc tacactttga ttttctccat tggctatagc tttcttgaag
     6421 ctttcaaaag cttcttggaa tttattctca ttcatttgag aaacgcctaa attataatta
     6481 gataaagatt cattatatac ggcaacttgc tcataaactt ttaaagcctg ttcaacctca
     6541 ccctttaaat ataaagcatt tgctttttgg atcataccat caattctttg catatcattg
     6601 tatttatatg attcatcagg cataataaca ggttgttcta aaggcttaga agctataata
     6661 tctggtttaa tttttccttc actaaaagtt aaataaaaaa gtgtaaaaac taaaatacaa
     6721 ataatcccca aagataaacc cacaagagac ataaacttac gatctttata ccaaggcgta
     6781 ggctcttgac tttcaacttc ttcaaaagtt gatacatctt caggcgcact ttctcttgta
     6841 aatttaaaac cactttcact attttcttga ggtaattctt ctggcaatga tgcaaattct
     6901 tcatcttctg gagcttgccc ctcttgccct ttaaatccct ctaaactctc atcaagtctt
     6961 ggttgattta agccatcttc gggtttttct agtattatat cttcttgttc agccatctat
     7021 actctttaaa aatatttttt caaaacatca ggaatatgaa tttttccttc tttatcttga
     7081 taattttcca taatcgctac caaggttctt cctactgcca aagatgagcc attaagagtg
     7141 tggacgagtt cattttttcc ttgttcgttt ttatagcgaa ttttagcgcg tcttgcttga
     7201 aaatcacgac aatttgaaac cgagctgatc tcacgatatt tattctgtcc tggaagccac
     7261 acttcaagat ctacagtttt tgctgcacta aaacccaaat ctccagtgca aagcatcaaa
     7321 tgtctatgcg ctaaacctaa agaactcagc aaatcacttg cacactcaag catttcatta
     7381 aacacactat cactttgctc aggtttagtg atacttacaa gctctacttt ttcaaactgg
     7441 tgttgtctta taatacccct tgtatcacgc cctgcactgc ctgcttcttt tctaaaacaa
     7501 gcactataac aagtcatttt tataggtaaa gtttcactcg ctaaaatttc tccgctgtaa
     7561 agattggtta ctggaatttc agaagttgag atcaaataca aatcctcatc atctacctta
     7621 tacatatctt ctttaaattt tggcaactga cccgtcccaa acatagtagc accatttacc
     7681 aaaaaaggta cattaacaaa ttcaaatcca cgacttctat taaaatctat catataattt
     7741 accaaagcac ggcttaataa agctccttca tttttaagca cacaaaaacg actttgtgaa
     7801 atttttaccc cacgcataaa atcaagccaa tttaaactct cgcctaattc aaaatgttct
     7861 tttggagtaa aatcaaagct aggtggattt aaaacttttt taagctccac attttcattt
     7921 tcatcttcac ccacaggcac acattcatca gggatatttg ggatggcatg agcgatttcc
     7981 tcaagctcat tttctaaagc atttacttta gcgctttgct cattaatttt gcttttattt
     8041 tcgcttaatt ttgcttttaa actttcttta tcttcggctg tagcaagctc tttactgaat
     8101 ttattttgaa aagcttgaaa ttcttccaag gctatttttt ctttttttaa acttgcaaaa
     8161 agttcagcaa gtttttttaa gatattttca tcaacttttt tattttttaa ctttttagcc
     8221 acttcatcaa aattattttg caaatttttt aaatctagca ttttctactc cttaaagtcc
     8281 gattttttca taaatttttt gcattttttc ttgggcgatt tttcttgctt ttgtcgcacc
     8341 aaaatccaaa atttctttca aatgcgaagg cttttctaaa agctcattat atttttctct
     8401 tgcttcttta aaataagcat ttacaagctc gtttaaatat attttaaaat gtccataacc
     8461 ctcaccacct ttttcatagc gtatttgtaa ttctttttgc cctgattcat ctaaaaaaag
     8521 ctttgcgatt ttaaaaatat tgcagttttc atgatctttt ggatcttcta aagcggtact
     8581 atctgtaact atggaagaaa tttgtttttt taaggttttt tcactgctaa aaatatctat
     8641 agtattttga taagatttac tcatttttgc tccatcagta cccacaacca cagctacttc
     8701 ttcattaact ctcgcttctg gaagggtaaa aatttcaccc cattcattat taacttttaa
     8761 agcaatatcg cgtgcgattt caacatgctg gatttgatct tttcctacag ggacaattcg
     8821 tgtatcaaaa agtaaaatat ctgccgccat taaaacagga taagaaaaaa gcccatgtga
     8881 agcactaagt cccttagcaa ctttatcctt gtaactatgt gcacgctcta ataaacccat
     8941 aggagtaaat tgcgataaaa tccaataaag ctccataact tccttaacat cactttgcaa
     9001 ccaaaaaacg cttttttgag gatctatacc aaggcttaaa aaagccgcag cagcttttaa
     9061 ggaattttgt ttaagttttt ctccatcttg agaagaagtc atggcatgat aattagcaat
     9121 aaacataaac atttggcttt tttcttgtgc atctaccatt tgcttaatcg caccaaaata
     9181 attacctata tgcaaatcgc cacttggctg aaggcctgtt aatactctca ttttatcacc
     9241 tttttaatct cgcttaaaag ctcatctata tttttatttt ctatatttaa aataaaattt
     9301 gccttttgtt catacttgct taaacgctca ttatataatt tttttgcttt aatttcatca
     9361 taaaataaag gtcttttaga aatttcatct ttgtctaaac gcttttttaa atattcaaaa
     9421 tctgctttta aataaataca aaaacctgct ttttctaaat ttgaaacatt aacaaaaccc
     9481 ccacctgtag caatacaagc tttctcacaa gaactaaaaa aatcagccat tttttgctct
     9541 tgttctctaa aaaaattttc ccttttttgt tcaaaaattt cactgacttt ttgattaaat
     9601 ttttgttcta ttaaaaaatc actatctaaa aaaacaagat ctaaatcctt agctaaagct
     9661 cttgctaaag tgctttttcc agaacccata aatcctataa aaacgatatt tttagctttc
     9721 atcattttct ttactgccct ttttacgcga agcaatcact aaaggcacac cttcaaaatt
     9781 aaattctttt ctgatttgat tttgtaaata acgcttatag ctaaaatgca aggccttagg
     9841 acgattcata ataagtgcaa tttttggcgg tgctaagtca tattgtactg cataataaat
     9901 tttaaccaat ttcccataat catgcggcaa aggatgtgct cttgtggcat tttctatcaa
     9961 ggtattaagc ttagaagttt ggattttttg agtgaaattt tcaaaaattt gcaaaatttt
    10021 atcgagtaaa acatgcaccc tttttccact taaagctgat acgctaatca cgggtgcgta
    10081 agctagaaat ttaaaacgat caagacgcaa ttcttttaca gtcttatcaa aatccatctc
    10141 acttttatcc catttattta aaacaataat cacacccaaa taatgcttag ccacaagccc
    10201 agcaatgcgt tcatcaagct cgttaaagcc ctcatgcgca tctaaaacca aaagtgctat
    10261 ttgagaatga gataaaattt tttccgtgcg atttagggca aagcgttcga gtccttgaat
    10321 tttacccctt tttctaatac ctgcagtatc aacaaattct atcactttat ctttatgaac
    10381 tacactttca ttaacaggat ctatagtagt tcctgcaata gaacttacaa cactgcgttc
    10441 ttgtttaacc aaagcattta aaagacttga ttttccaaca tttacacgcc ctacaatacc
    10501 cactctgata tgattttgat cgacttcttt aaattgaaat tcttttcctt cttcataata
    10561 ctctaaaaaa tcttctaaat tttcttcttc atcggggatt aaaaactctt catgtaaaaa
    10621 tttttcaagc cattcataaa gttcatctaa gcctacatta tgggttactg aaagattaaa
    10681 gatttccttt acgccaaaat ttgcaaactc ccaagccctt tcttcatctt ttttattatc
    10741 tactttatta atcactaagg ctataggttt tccaagtttt tttaaagaat aaaaaaactg
    10801 tctatcctca tcatcaggcg ctaatttccc atcaactaga taaagtatga tatcgctttc
    10861 tttagctact tttaaagtgt tttttttcac atttttaaaa agttcatcac tttcatcaag
    10921 ccctccacta tcaataagca tggctttttt tgaatgaata tgaatttgcg ttttatttgt
    10981 atctctagtt gtgcctgaaa tatcacttgt aatagctatt ctttgtcttg ccattctatt
    11041 aaaaaggctt gattttccca catttggctt acctataagt ataatgcttt gcattttttt
    11101 cctagaaaat tatattttta aaattatata aaatttggct taatattaag caaaaaaaga
    11161 ctagaattaa cccagatttt agtcaaggaa aaaaaatgct aaaagtaatc aagcataatt
    11221 taggaattta tttcatgatt ttagcatgtt tggattttgc acttatggga gcttgtgcaa
    11281 aaattcttag caaggaaatg agttctatag aaattatgtt ttttagaaat atcataggaa
    11341 tttttttcat agtctatctt ttaaaacgat ctaaggcaca taaagaaggg ggatattttt
    11401 ggctcttggt atttcgtgga gtagtaggca cgctttcact atatatgttt ttctataatg
    11461 tttcaaatat tacactaggt ggagcttttg cttttcaaaa aactgctcct atttttatta
    11521 ctttaatagc ttttgttgtt tttaaagaaa atattggcat caaaggctgg ataggaattt
    11581 taatagcatt tggtggagtg cttttaatcg ctcagccttg ggctcataat ttaaatcatt
    11641 caggctttga tttaaaaaat tcagttatag gtatcacgag tggattttta gccgctttag
    11701 ctcttacaag tgtaagagaa cttagaaaat cttacactac agaacaaatt gccttttctt
    11761 ttatcctttt aggaacctta atgcctttaa tttctatgat cagtgctgaa ttttttgaac
    11821 cacagcatct tgattcttta catttagatt tcattctagc accttttgtg atgccaagtc
    11881 ttacagcttg gcttatcatt gccattatgg gaactttagg caccatttat caaattcatg
    11941 tcactaaagc ttatggtatc gctaaacaag caggagtggt tgccggagtt agttatcttg
    12001 atgtagtatt tagtatgata gttgggataa ttttgggaga taatttacca agcactatgg
    12061 tttttttagg tataataggc attatttttg gtggattaat tttagttaag aacaaaggaa
    12121 aaaaatgaaa aaaatgatac tcattgctgg tccttgcgtg atagaaagca aagatttgat
    12181 ttttaaagtt gctgaacagt taaaaaattt taatgaaaat ccaaatatag aattttattt
    12241 caaatcaagt tttgataagg ccaatcgcac aagtattaat tcttttcgag gtcctggtct
    12301 tgaagaagga ttaaaaattt tacaaagcgt aaaagatgaa tttggtatga aaatcttaac
    12361 cgatatacac gaaagcaatc aagcaaaccc tgtaagtgaa gtagctgatg tcttgcaaat
    12421 tcctgctttt ttatgtcgtc aaaccgattt acttgtagcc gcagcaaaaa ctaaggcaaa
    12481 aattaatatc aaaaaaggac aatttttaaa cccaagcgat atcaaataca gcgttaaaaa
    12541 agttctacaa acccgtggta tagaagatga aggctatgaa gctgctcaaa gaaatggtgt
    12601 ttttgtagct gaaagagggg ctagctttgg ctatggaaat ttagtagtag atatgcgttc
    12661 tttagttatc atgcgtgaat ttgctccagt tatttttgat gctacccata gcgtacaaat
    12721 gccaggggct gcaggtggaa gtagcggagg gaaaagcgaa tttgtagaac ctttagcaag
    12781 agcggcagca gccgtaggca tagatggctt tttctttgaa acacatatta atccttgcga
    12841 ggctttatgc gatggaccta atatgcttaa tcttacacgc cttaaaaatt gcgttaatac
    12901 attactagaa atacaaaata tcataaagga aaacaaatga atattattga aggaaaatta
    12961 aatttagact caaatacaaa aattgctatc attaatgcaa gatttaatca tatcatcaca
    13021 gatcgccttg tagaaggagc aaaagatgct tttttaagac acgggggcaa agaggaaaat
    13081 ctaagcctta tacttgttcc tggtgctttt gaacttccgt atgcgttaaa aaaagctata
    13141 gaaagcaaaa aatttgatgc aatttgttgc gtaggcgcag taattcgtgg ctcaactccg
    13201 cattttgact atgtttcagc agaaaccacc aaaggcatag ccaatgtgag tttaaatcat
    13261 aatatccctg taagctttgg tgttttaact acagatacaa tagaacaagc catagaaaga
    13321 gctggaagca aagcaggcaa taaaggcttt gaagctatga caactgtaat cgagatgtta
    13381 aatttaagca aggagcttta atggcaacgc gtcatcaagt tcgccaaagc gtcatctcct
    13441 tactttatgc ttttgaatta aattctcaaa acaacgtttt tgtagatgaa attttagatg
    13501 aaaaaaaaat acgcaatgaa caaaaaaatt ttactttaaa tttatataat ggaattttag
    13561 ataatttaaa caatattgat gaaaccttaa attcatttct aaatgataat caaattacag
    13621 ctttaggaca tgtagaaaga gctatactaa gacttggagc ttatgagtta ctttttaccg
    13681 atactcctag cgccattgtc atcaatgagg ctatagaact tgctaaagaa cttgctaatg
    13741 acaattctcc aaaatttata aatggagttt tagatgcctt aataaaggct aaaaaatgaa
    13801 gctttgtgtc gcacttgatc tttctacaaa agaagaatgc ttacaacttg ccaaagaatt
    13861 aaaaaattta gacatatggt taaaagtagg tttaagagca tatttaagag atggttttaa
    13921 attcatagaa gaacttaaaa aagttgatga ttttaaaata tttcttgatc ttaaatttca
    13981 tgatattccc aacactatgg cagatgcttg cgaagaagta tcaaaacttg gtgttgatat
    14041 gatcaatatc cacgcaagtg ctggaaaaat agccatacaa gaagttatga cacggcttag
    14101 caaattttca aaaagacctt tagttttagc agtttctgct cttacgagtt ttgatgaaga
    14161 aaatttcttt agtatttata gacaaaaaat tgaagaagct gtaattaatt tttcaaaaat
    14221 atcctatgaa aatggacttg atggtatggt atgctctgtt tttgaaagca aaaaaattaa
    14281 agagcacaca agttcaaatt tcttaaccct tactcctgga attcgtcctt ttggagaaac
    14341 aaatgatgat caaaaacgtg ttgctaatct tgcaatggct agagaaaatt tgagtgatta
    14401 tatcgttgtg ggaaggccta tatataaaaa tgaaaatcct agggctgtat gtgaaaaaat
    14461 tttaaacaaa atacacagaa aaaatataag cgaaaacgat atagagcaaa attatgaagt
    14521 aattcagcaa aaagaatggg atatgtgtaa tcactttgaa gaatggatta aaactcagcc
    14581 tgataaagaa catgctttaa aagaatttta tgctaagtgt gggataaaat attgaattat
    14641 caacaattag aatgcgatta ctttaatctt tacaatcagt ttcttagcgt ggattttcaa
    14701 atttcattat ttgaaaaaga tcataaaggt ttaattaaag attttatatt tttttattat
    14761 caaattttaa aacaaaaaga cttgagctac ttgcttgagg taagaaataa aatttccctg
    14821 aaagtttata attatatgca agagcactcc acttctccaa aagatttaag tcttatttgt
    14881 ctaagagaaa ataaacatat tgaatttttt caaatatttt acaaggctct cgcttatttt
    14941 gtagccttta gaaaaaaact tgatggagaa caaaaaatta aaaatttgat ttcaaatatc
    15001 aatgactgtt ttggctatca tttcttgaat tctgacttta acaatcttca aaattttcaa
    15061 aaaagcgatt tgttcacctt acctgaaaaa catcttaaat attttcactt cgccatgatt
    15121 catctttgtt tcatggtttt aaatccttta aattttaaag actctaatcg gcatcttgat
    15181 aaagcgatta attatcttgt cgatggaact tttgaaattt atgagctcat ctttaaagaa
    15241 tattttttat tgttttcaaa agataaagag ctcaaggatg aacttagaaa attaaaaaaa
    15301 ttagaattta aaattctaat gcaagaaact tcaaaaatta aactacttaa tcattataaa
    15361 gaattttgcg aagaaatatt ctacaatata gaacttgaaa aaatcacaca aaattaatcc
    15421 tgtattaaca ttgttatagt ttaataataa aaatttttaa taaggaaaaa ttatgcttat
    15481 aacacctgaa aaactttata aacaaaggag aaatttttta aaacttggag cgggtgcttt
    15541 aataagttca agcgtgcttg cttctaaact atctgcttta aatttcacaa gcgatactaa
    15601 tccaaacaaa cttgaaatca gcgatgaaga actagctaca aattatgtca atttttatga
    15661 attttcaaca gataaaagaa aggctgtatc attggcacaa aatttcaata ctcaaaattg
    15721 gaaaatcgat atcagtggag aaatagaaaa acctttaact ttaagcatgg aagatatttt
    15781 aaaatttcca ctagaagaaa gaatttatcg ttttcgctgt gttgaaactt ggtctatggt
    15841 ggtaccttgg gtaggctttg aattgcgtcg tttgattgaa atggcaaaac ctacaagcga
    15901 ggcaaaattt gttaaattca ccactctttt agataagagt caatttcccg atcaagacgc
    15961 tttatttcca actatagact atccttatgt agaaggactt cgcatggatg aagctatgca
    16021 tcctcttacc ttgcttgcag taggaatgta taaaaaagcc ttaaagcctc aaaatggcgc
    16081 tccaatacgt cttgttgttc cttggaaata tggctttaaa agtattaaat ctatagttaa
    16141 aatagaattt actaaagaac agcctaaatc cacttgggaa agttacgctc caagtgaata
    16201 tggtttttat gccaatgtca atcctaatgt ttctcatcct agatggtctc aagctaacga
    16261 aagggcttta ggagacttct ttaccaagcc tactttaatg tttaatggtt atgaaaaaga
    16321 agtggcaagt ttatataaaa acatggactt gaaagtgaat ttttaatgca gacaaaatac
    16381 tttaaatttc ttgcttattt tagctttatc ataagtttaa tttatggctt tt
//
LOCUS       DARBBO010000031        16281 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.031, whole genome shotgun sequence.
ACCESSION   DARBBO010000031 DARBBO010000000
VERSION     DARBBO010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16281
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.031"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..908
                     /locus_tag="SB854_000804"
     CDS             <1..908
                     /locus_tag="SB854_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="dihydrodipicolinate synthase family protein"
                     /protein_id="HEG0956820.1"
                     /translation="GILKGTLPALLTPYKDDGSINEKEFIRYCEFGISKGLNGLFCNG
                     SAGDSQALSVEEQVKLMKLTKKATKNNIPIITGITSTIYENTFILAQKAYELGLDALL
                     LAMPYYYKLSEDALFEYVKYLASEVKLPLYVYNIPLFAPALSLKFIEKVSKLDNVVGI
                     KDSSGDALLLNHILDVVPSNFDVFVGREEFYVGALLAGVKGSMTSIGGVFPELMSEIY
                     KSINEKNIGRALLIQKSLLKAIRFGMSIAFPMGFALLLKARGFEFVNASIHPLSPATK
                     EELNTRFDEAKELIKTIEKETGIKL"
     gene            905..1168
                     /locus_tag="SB854_000805"
     CDS             905..1168
                     /locus_tag="SB854_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002901625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEG0956821.1"
                     /translation="MKGYIIVNEKDNVATALRDFKKGEKVANIELLNDIASGHKFALK
                     DIKKDEIIIKYAEAIASASCDISTGEWVHIHNTAGIRGRGDKE"
     gene            1171..2337
                     /locus_tag="SB854_000806"
     CDS             1171..2337
                     /locus_tag="SB854_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UxaA family hydrolase"
                     /protein_id="HEG0956822.1"
                     /translation="MKKIMGYRREDGKFGLRNKVIIIPSVHCANKVCENIARKCNGAV
                     YINHQHGCSQLEFDALQTRDVLIGHGSNANVFGVLIIGLGCEVIQAKAVAEKIKEATP
                     YKKVEYLVIQECGGSKNTIENGIKIVNEMLESAAKLQKSEGDFSDLILGTECGGSDSY
                     SGLSANPALGSLSDFVIDEGGAVILAETTELIGCEAILAKRAKNDEIAKKVYDKILAY
                     ENLVKSFHADIRGANPSPGNMAGGLSTIEEKSLGCVYKAGTKTLMDVIDYAKPVVSKG
                     LTFMNTPGNDIEQLSAMVAGGANICVFTTGRGTPTGSAIVPTIKMSSNTFCYENMNDA
                     IDINAGSIIDGVKTKEEVRDELIELIVRISDGELVKAELNEQNDFSVWRLATTC"
     gene            2349..3635
                     /locus_tag="SB854_000807"
     CDS             2349..3635
                     /locus_tag="SB854_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004314306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0956823.1"
                     /translation="MKHANSIKLELVCKKISWRILPLIVLMFCLSMLDRTNISFVKSH
                     IEIDAGIGEAAYALGAGIFFIGYAIFEVPSNLFLHKLGAKIWLSRIMITWGLVTMAMI
                     FIQGEISFYVLRFLLGLTEAGFSPGIILYLGYFFPAIYRSKAYGIYQMGVPIAFVFGS
                     LISGFILDYTPNIYFKNWQWMFLIEGGITVLVGIFCLFYLDSHPKDAKWLDIKEKDIL
                     LKHIEISNTKAKDYSIKDIFKSILVWKFVFVYFCIQLSVYGVLFYLPSKIAQILQINV
                     GFEVGLLNAIPWIFVFIALPIFTSLADKKHSWNLHAILFLLLASLSMIASTFVTNLAA
                     FLFFISLAAIGFIVIQPIFWNLPTQVLKGKGAAAAIALIGSLGNLGGFVAPTLKTYIE
                     NHFGVEFGLIVLALIAILGVLVLIHLKITLNLDKGE"
     gene            3636..4424
                     /locus_tag="SB854_000808"
     CDS             3636..4424
                     /locus_tag="SB854_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEG0956824.1"
                     /translation="MDLKIKNKVCIITGGAKGIGYGIAKLWASEGGIPVIFSRSMPKE
                     HDKELKKLSSEYEFYEIDLKNYEQIEKLVKKVAIKHGGIYALVNNAGTNDNLHIENTS
                     TQDLIKSYENNLFHYYTMTKECLPYIKKEQGSILNIVSKTGITGQGRTSAYASAKAAQ
                     MGFTREWACAFAKDNVRVNAIAPAEVMTPLYEKWLQNFPNPKEQYEKIAKAIPLGHRF
                     TTIEEIANTAVFTLSPLASHTTGQILMPDGGYVHLDRALNWDEN"
     gene            4435..5691
                     /gene="fucP"
                     /locus_tag="SB854_000809"
     CDS             4435..5691
                     /gene="fucP"
                     /locus_tag="SB854_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose:H+ symporter permease"
                     /protein_id="HEG0956825.1"
                     /translation="MTDSKNIKIAIVLVTSLFFLWGVSYGLIDVMNKNFQNHLHISQH
                     ESGFLQFAYFGAYFIIALPAGYIANRFSYKMGIIFGLALYAIGALLIIPATNLASFHL
                     FLFAFFILACGIGSLETSANPYMTKLGDEKNASFRINAAQSFNGLGQFVGPIIGGALF
                     LSITKQEEGASKEQIEAALVANMGNVQLVYIGIAVIVILILIAFVANKLPEGSAVSDD
                     YKQKDDSKPIYVFKHRHFNLGLLAQFLYIANQVAAGAFFINYVVEHNEGLKDAQGAYY
                     FSIALIAFMLGRIVSTPLMKIIKGEKILGFYSLINVLICFSLYFASGFFSIVLLIALF
                     FFMSISFPTIFAVATKNLPLNQVKLGGSLLVMSIVGGAIMPIIIGFINDHYGTGAGYL
                     AMAPLFLYVAWYGFIGSKVRKNAKDF"
     gene            5675..6445
                     /locus_tag="SB854_000810"
     CDS             5675..6445
                     /locus_tag="SB854_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG0956826.1"
                     /translation="MQKIFDAHLHLWDLEKIPISWIKDDEKLEQNYDFFRMKQEYKEF
                     EFIDAMYVEVNSDDLEKEALFALEQKKLHNLLFCLADFKHKEELSSFREVMHTSKKGA
                     KRLFEADFEEKIEILKTFNIPFEACMKNEELSFLENFLNKNSNLKVVLNHLGSPKINR
                     LNEYKKDLNLLKKFPNLYIKLSIPDGFSQETPKEFIFELFAFLKENFSENKFIFGSNY
                     PVSNLSPKQWIELIMQSKVFKDLDLIFYKNALSIYKGE"
     gene            6446..6763
                     /locus_tag="SB854_000811"
     CDS             6446..6763
                     /locus_tag="SB854_000811"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HEG0956827.1"
                     /translation="MQRYGQIIKIKKEKIQKYKNLHAKPYEGVCEMIKECNIQNYSIY
                     LFGEYLFAYFEYVGADFEADMAKMARDENTQKWWKVTDPCQISLGYAGQKWLNMEEVF
                     HLD"
     gene            6777..8216
                     /gene="aldA"
                     /locus_tag="SB854_000812"
     CDS             6777..8216
                     /gene="aldA"
                     /locus_tag="SB854_000812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase"
                     /protein_id="HEG0956828.1"
                     /translation="MTTYLNYIDGEFIPHNGDFIEVLNPATKEVISKVASASLEDAKR
                     AIEAAKKAQKSWETKSAIERANHLREIASLIRKNANFLTEILMQEQGKTRALASVEVN
                     FTADYMDYTAEWARRYEGEIIQSDRANEHIYLYKSAIGVIGGILPWNFPFFLIARKMA
                     PALLTGNTIVIKPSSETPNNAFEFVKLVSQSSLPKGVFNLVAGKGSVVGYELSSNENI
                     GMVSLTGSVEAGARVMEAAAKNIIKVSLELGGKAPAIVCKDADIDLAVEAIKASRICN
                     NGQVCNCAERAYVHTSIYDEFVDKFVKAMSKVSVGNTLKGDFDMGPLVNQAGVDNALA
                     MLQRATAKGAVVECGGKITDTSGYYFPASVLTNVKHEDEIMQKEIFAPILPIAKFDTL
                     DEAIDMANDCEYGLTSSIYTQNLDIAMRASREIKFGETYINRENFEAMQGFHAGFRKS
                     GIGGADGKHGLEEYLATHVVYLQYNTNKQ"
     gene            8544..8930
                     /locus_tag="SB854_000813"
     CDS             8544..8930
                     /locus_tag="SB854_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEG0956829.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            9000..9470
                     /gene="rpsG"
                     /locus_tag="SB854_000814"
     CDS             9000..9470
                     /gene="rpsG"
                     /locus_tag="SB854_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEG0956830.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            9483..11558
                     /gene="fusA"
                     /locus_tag="SB854_000815"
     CDS             9483..11558
                     /gene="fusA"
                     /locus_tag="SB854_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEG0956831.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVANIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLVSEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            11587..11663
                     /locus_tag="SB854_000816"
     tRNA            11587..11663
                     /locus_tag="SB854_000816"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:11621..11623,aa:Arg,seq:cct)
     gene            11681..11830
                     /locus_tag="SB854_000817"
     CDS             11681..11830
                     /locus_tag="SB854_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956832.1"
                     /translation="MIKIAFFITFVISFLAAQSPVNFKEDNNITKERNIFKEQSPKRI
                     KIPTH"
     gene            11836..12537
                     /locus_tag="SB854_000818"
     CDS             11836..12537
                     /locus_tag="SB854_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEG0956833.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNKIQGDIFHDDFNQFQIIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLAKTNSMLKPNGTLYFCYEALALDE
                     ICFILKDMKMKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            12527..12901
                     /locus_tag="SB854_000819"
     CDS             12527..12901
                     /locus_tag="SB854_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEG0956834.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LNLESKEFAEKYLRKVGFKMSFKEVECEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            12874..14151
                     /locus_tag="SB854_000820"
     CDS             12874..14151
                     /locus_tag="SB854_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent nuclease subunit B"
                     /protein_id="HEG0956835.1"
                     /translation="MYRYLLFVLAAFFLAACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLSLANNLDKQAELDNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLTKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFVLALVELLNSQGKTEEALKISLQYDLDDDIKLALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGDCKQ
                     AWEILKQTLDDKEFANSDESKAHIKAIKACIKP"
     gene            14148..14924
                     /gene="trpC"
                     /locus_tag="SB854_000821"
     CDS             14148..14924
                     /gene="trpC"
                     /locus_tag="SB854_000821"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEG0956836.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKAAAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREKDEGKALKALL"
     gene            14934..15419
                     /locus_tag="SB854_000822"
     CDS             14934..15419
                     /locus_tag="SB854_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEG0956837.1"
                     /translation="MQYLYAPWRSEYFEKVKSICPFCDCANKIKSDEELGVIFRAKHC
                     FGVMNRYPYSAGHFMVIPYIHEEHIENLSDEIWQEMSYFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAFHCHYHLVPRWSGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            15409..>16281
                     /gene="mnmH"
                     /locus_tag="SB854_000823"
     CDS             15409..>16281
                     /gene="mnmH"
                     /locus_tag="SB854_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HEG0956838.1"
                     /translation="MLSEVEFVEFQKENFSFLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKAMGASYICQNTAKHILEITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFALCGNTGCGKTELLEQLPQ
                     AINLEKMANHLGSSFGDILGKQPTQKAFEAELFHNIQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVRRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQKLIVM"
BASE COUNT         5702 a         2025 c         3217 g         5337 t
ORIGIN      
        1 tgggaatttt aaaaggaact ttaccggctt tacttactcc atataaagat gatggaagta
       61 tcaatgaaaa agaatttatt cgctattgtg aatttggtat ttctaaaggc ttgaacggat
      121 tgttttgtaa tggaagtgca ggggattctc aagctttgag cgtggaagag caagttaagt
      181 taatgaaact caccaaaaag gctacaaaaa ataatatacc tatcatcacg ggtattacct
      241 cgacaattta tgaaaacact tttattttgg cgcaaaaagc ttatgaatta ggtcttgatg
      301 ccttattact tgctatgcct tattattata aattgagtga agatgcactt tttgaatatg
      361 taaaatattt agcttctgaa gtgaaacttc ccttatatgt ttataatata cctctttttg
      421 caccagcact aagcttaaaa tttatagaaa aggtttcaaa gcttgataat gttgtgggta
      481 taaaagatag tagcggagat gctttgcttt taaatcatat tttagatgta gtacctagta
      541 attttgatgt ttttgtagga agagaagaat tttatgtagg tgcattatta gcaggtgtaa
      601 aaggttctat gactagcata ggtggagttt ttccagaact tatgagcgaa atttacaaat
      661 caatcaatga aaaaaatata ggcagagctt tgctaataca aaaaagttta ttaaaggcca
      721 taagatttgg tatgagcata gcttttccta tgggttttgc tttgctttta aaggccagag
      781 gatttgaatt tgtaaatgct agtattcatc ctttatcacc tgctacaaaa gaagaattaa
      841 acactcgctt tgatgaagca aaagagctta ttaaaactat agaaaaagaa acaggtataa
      901 aactatgaaa ggatatatta tagtcaatga aaaagacaat gttgccacag ctttgcgtga
      961 ctttaaaaaa ggcgaaaaag tggcaaatat tgagctttta aatgatattg caagcggaca
     1021 taaatttgca ctaaaggata taaaaaaaga tgaaattatt atcaaatacg cagaagctat
     1081 agctagtgca agttgcgata ttagtacagg ggaatgggtg catatccata atactgcggg
     1141 aattagaggt cgtggagata aggaatgaaa atgaaaaaga taatgggtta tagaagggaa
     1201 gatggaaaat ttggcttaag aaataaagtc attatcatac caagtgtaca ttgtgctaat
     1261 aaagtgtgtg aaaatatagc tagaaaatgt aatggggcag tttatatcaa ccatcagcat
     1321 ggttgctccc agcttgaatt tgatgcttta caaactagag atgttttaat aggtcatggg
     1381 agcaatgcca atgtttttgg tgttttaatt atagggcttg gttgtgaggt aatacaagcc
     1441 aaagcagtag cagaaaaaat caaagaagca acgccttata aaaaggttga atatttagtg
     1501 atacaagaat gtggtggtag taaaaatacc attgaaaatg gtatcaaaat agtcaatgaa
     1561 atgcttgaaa gtgctgcaaa attacaaaaa agtgaaggag atttcagtga tttgatttta
     1621 ggcacagaat gcggtggaag tgatagctat agcggactta gtgctaatcc tgctttagga
     1681 agtttgagtg attttgtaat cgatgagggt ggtgcggtaa ttttagcaga aactacagaa
     1741 cttataggtt gtgaagccat actagctaag agagcaaaaa acgatgaaat agctaaaaag
     1801 gtatatgata agattttagc ttatgagaat ttagtcaaat cttttcatgc tgatattcga
     1861 ggagcaaatc ctagcccagg aaatatggca ggcgggctta gtactataga ggaaaaatct
     1921 ttaggctgtg tttataaggc aggaactaaa accttaatgg atgtgattga ttatgctaag
     1981 cctgtagttt ctaaaggttt aacttttatg aatacaccag gcaatgatat agaacaactt
     2041 agtgctatgg ttgcaggtgg agcaaatatt tgtgttttta ctacaggtcg tggcactcca
     2101 acgggttctg ctatcgtgcc tactatcaaa atgagttcta atactttttg ttatgaaaat
     2161 atgaatgatg ctattgatat taacgcagga agcattatag atggggtaaa aacaaaagaa
     2221 gaagtgcgtg atgagcttat agaattaatc gtgcgaattt cagatggaga attggtaaaa
     2281 gccgagctta acgagcaaaa tgatttttca gtttggagac ttgctacaac ttgttaaagg
     2341 gtaaagtgat gaaacatgca aattcaataa agttagagtt agtatgtaaa aaaatatctt
     2401 ggcgtatttt gcctttgatt gttttgatgt tttgtctttc tatgcttgat aggacaaata
     2461 ttagctttgt gaaatctcat atagaaattg atgcaggcat cggtgaggct gcttatgctt
     2521 tgggtgctgg aatatttttt ataggttatg ccatttttga agtgccttca aatttatttt
     2581 tgcataaatt aggagcaaaa atttggttga gccgtataat gatcacttgg ggtcttgtaa
     2641 ctatggcaat gatttttata caaggagaaa taagttttta tgtattaaga tttttattgg
     2701 gtttaactga agcaggtttt agtccaggca ttattttata ccttggttat tttttcccag
     2761 ctatatatcg atctaaggct tatggaattt atcaaatggg agttccaatt gcttttgttt
     2821 ttggttcttt aattagcggt tttatacttg attatacacc aaatatatat tttaaaaatt
     2881 ggcaatggat gtttttaata gaaggaggta ttaccgtttt agtaggtatt ttttgtttat
     2941 tttatcttga ttcacatcca aaagatgcaa aatggttaga tataaaagaa aaagatattt
     3001 tgctaaaaca tattgaaatt tccaatacta aagctaagga ttattctata aaagatattt
     3061 ttaaaagtat tttggtgtgg aaatttgtat ttgtttattt ttgtattcaa ttaagtgttt
     3121 atggagtgct tttttattta ccaagtaaaa ttgcccaaat attgcaaata aatgtaggtt
     3181 ttgaagttgg acttttaaat gccatacctt ggatttttgt ttttatcgcc ttgccaatat
     3241 ttacctcatt ggctgataaa aaacattctt ggaatttaca tgcgatttta tttttactgc
     3301 tagcaagttt gagcatgata gcttcaactt ttgttacaaa tttggcggca tttttatttt
     3361 ttattagctt ggctgctata ggttttatag tcattcagcc tatattttgg aatttgccaa
     3421 ctcaagtttt aaaaggaaaa ggagccgcgg ctgctattgc tcttatagga tccttgggaa
     3481 atttaggagg ttttgtagct cctactttaa aaacatatat agaaaatcat tttggagttg
     3541 agtttggact tatagtgtta gcattgatag caattttagg tgtattggta ttaatacatt
     3601 taaaaataac tttaaattta gataaaggag aataaatgga tttaaaaatt aaaaataagg
     3661 tttgtattat tacaggagga gctaaaggta ttgggtatgg tattgctaaa ttatgggcaa
     3721 gcgaaggcgg aattcctgta attttttcaa gatctatgcc taaagagcac gataaagaat
     3781 taaaaaaatt atctagtgag tatgaatttt atgaaattga tttaaaaaat tatgagcaaa
     3841 ttgaaaagct tgtaaaaaaa gttgctatca aacatggtgg aatctatgct cttgtaaata
     3901 atgcaggtac aaatgataat ttacatattg aaaatacaag tactcaagat ttgataaaat
     3961 cttatgaaaa taatcttttt cattattata ctatgaccaa agaatgtttg ccttacatta
     4021 aaaaagaaca aggcagtatt ttaaatatag tgagtaaaac aggcatcaca ggacaaggaa
     4081 gaacttcagc ttatgcttcg gccaaagcgg ctcaaatggg ttttactaga gaatgggctt
     4141 gtgcttttgc taaggataat gttagggtaa atgctatagc tcctgctgaa gttatgactc
     4201 ctctttatga aaaatggctg caaaattttc ctaatcctaa agagcaatat gaaaaaatcg
     4261 caaaagctat acctttaggc catcgtttta ctaccataga ggaaattgca aatacagcgg
     4321 tttttacact tagtcccctt gcttcacata ctacagggca aattttaatg ccagatggag
     4381 gttatgtgca tttagataga gcattaaatt gggatgaaaa ctaaggagta aaaaatgact
     4441 gattctaaaa atataaaaat agctattgtt ttggtaactt ctcttttctt tttatgggga
     4501 gtaagctatg gacttattga tgtgatgaat aaaaattttc aaaatcatct tcatattagc
     4561 cagcatgaaa gtggtttttt acagtttgct tattttggtg cttattttat catagcctta
     4621 cccgcaggtt atatagccaa tagattttct tataaaatgg gaatcatttt tggcttagct
     4681 ctttatgcca taggagcttt gcttattata cctgctacaa atttggcttc ttttcatttg
     4741 tttttgtttg cgttttttat tttagcttgt ggtattggtt ctttagaaac tagtgcaaat
     4801 ccctacatga caaagcttgg tgatgaaaaa aatgcgagtt ttagaatcaa tgctgcgcaa
     4861 agttttaatg gtttggggca atttgtagga cctattatag gcggagcttt atttttatct
     4921 attactaaac aagaagaggg tgcgagtaaa gagcaaatcg aggctgcatt ggtagctaat
     4981 atgggaaatg tccagcttgt ttatatagga attgctgtca ttgttatttt gattttaatt
     5041 gcttttgttg caaataagct tccagaagga agtgcggtaa gtgatgatta taagcaaaaa
     5101 gatgattcta agcccatata tgtttttaaa cacagacatt ttaacttagg gcttttagcg
     5161 cagtttttgt atatagccaa tcaagttgca gcaggagctt tttttatcaa ttatgttgta
     5221 gaacataatg aaggtttaaa agatgcgcaa ggtgcttatt atttttctat agctttgatt
     5281 gcatttatgc tagggcgcat tgtttctact cctttgatga agataatcaa aggtgaaaaa
     5341 attttaggat tttattctct aatcaatgtg cttatatgct ttagcttgta ttttgctagc
     5401 gggtttttta gcatagtgct tttaatagct ttatttttct ttatgtctat ttcttttcct
     5461 actatttttg cggtagcaac aaaaaattta cctttaaatc aagtaaaact aggcggttct
     5521 ttgcttgtga tgagcatagt aggtggagca attatgccta taattatagg ttttattaat
     5581 gatcattatg gtacaggcgc tgggtattta gcaatggcac ctttgttttt atatgtggct
     5641 tggtatggct ttataggctc aaaagtgaga aaaaatgcaa aagatttttg atgctcatct
     5701 acacctttgg gatttggaaa aaatacctat ttcatggata aaagacgatg aaaaattaga
     5761 gcaaaattat gattttttta ggatgaaaca agaatataaa gaatttgaat ttatagatgc
     5821 tatgtatgtt gaggttaata gtgatgattt agaaaaggaa gctttgtttg ctttggagca
     5881 aaaaaagctt cataatcttt tgttttgttt agcggatttt aagcataaag aagagcttag
     5941 ttcttttagg gaagtaatgc acacgagcaa aaaaggagct aaaagactat ttgaagcaga
     6001 ctttgaagaa aaaatagaaa ttttaaaaac tttcaatata ccttttgaag cttgtatgaa
     6061 aaatgaagaa ctcagttttt tggaaaattt tttaaataaa aattcaaatt taaaagtagt
     6121 tttaaatcat ctaggaagtc caaaaataaa tcgtttaaat gaatacaaaa aagatttaaa
     6181 tcttttgaaa aaatttccaa atttatatat caagctttct attcctgatg gtttttcgca
     6241 agaaactcct aaggaattta tttttgagct ttttgctttt ttaaaagaaa attttagtga
     6301 gaataaattt atatttggca gtaattatcc agtgtctaat ttgtctccaa agcaatggat
     6361 tgagttgatt atgcaaagta aggtttttaa agatttggac ttgatatttt ataaaaatgc
     6421 tttatcaatt tataaaggag aatgaatgca aagatacggt caaatcataa agataaaaaa
     6481 agagaagata caaaaatata aaaatcttca tgcaaagcct tatgaagggg tttgtgagat
     6541 gattaaagaa tgtaatatac aaaattattc catttatttg tttggagaat atttatttgc
     6601 atattttgaa tatgtgggtg ctgattttga agcggatatg gctaagatgg caagagatga
     6661 aaacacgcaa aaatggtgga aagtaacaga tccttgtcaa atatctttag gttatgcagg
     6721 acaaaagtgg ctaaatatgg aagaagtgtt tcacttagac taaaaaagga gaaaaaatga
     6781 caacttattt aaattatatt gatggagaat ttatcccaca taatggggat tttatcgaag
     6841 ttttaaatcc agctactaaa gaagtaattt caaaagtagc gagtgcttct ttagaagatg
     6901 ccaaaagagc gattgaagca gccaaaaaag cacaaaaatc ctgggagact aagtcagcaa
     6961 ttgagagagc aaatcattta agagaaatag ctagtttaat acgcaaaaat gctaatttct
     7021 taacagaaat tttaatgcaa gagcaaggaa aaactagagc tttagccagc gtggaggtta
     7081 attttacagc agattatatg gattatacgg ccgaatgggc tagaagatat gaaggtgaaa
     7141 tcatacaaag cgatagagct aatgagcata tatatttata taaaagtgct attggggtaa
     7201 ttggtggaat tttaccttgg aattttccat ttttcttaat cgcaaggaag atggcacctg
     7261 ctttactaac aggaaatacc atagtgataa agccaagtag tgaaactcca aacaatgctt
     7321 ttgaatttgt aaaacttgtt tcgcaaagtt ctttaccaaa aggtgtgttt aatttggttg
     7381 caggtaaagg tagtgtagta ggatatgaat tatcaagcaa tgaaaatata ggcatggtaa
     7441 gtcttacagg aagtgttgaa gcaggggcta gagtaatgga agctgcagct aaaaatatca
     7501 taaaggtttc tttagaactt ggcggaaaag ctcctgctat agtgtgtaaa gatgcggata
     7561 ttgatttggc agtagaagcg attaaggcaa gtcgaatttg caataatgga caggtttgta
     7621 attgtgccga aagagcttat gtgcatacaa gcatttatga tgaatttgta gataaatttg
     7681 taaaagccat gagtaaggta agtgttggaa ataccttaaa aggtgatttt gatatgggac
     7741 cattggtcaa tcaagcaggg gttgataatg ctttagcaat gcttcaaaga gctacagcta
     7801 aaggagcagt tgtggaatgc ggtggaaaaa tcactgatac aagtgggtat tattttcctg
     7861 caagtgttct tactaatgtt aaacacgaag atgagatcat gcaaaaagaa atttttgctc
     7921 ccattttgcc tattgctaaa tttgatacac ttgatgaagc tattgatatg gcaaatgatt
     7981 gtgaatatgg tcttacaagt tctatttata cacaaaattt agatatagca atgagagcta
     8041 gcagagaaat taaatttggt gaaacttata ttaatcgtga aaattttgag gctatgcaag
     8101 gttttcatgc aggctttaga aaaagtggca taggcggagc tgatggaaaa catggtcttg
     8161 aagaatattt agctacccat gtggtatatt tgcagtataa tactaataaa caatgatttt
     8221 tatcctatct aaatttttag ataggagtta ttataatctt ggaatcaagt atgatgcttt
     8281 ataactatgg attaaacact tttttagtaa tttcttaaaa tcaattttgg aatttttcat
     8341 tttgtctaaa atgagtaaga ttatttttat aagtaaaaca ataattaaaa attagtttat
     8401 gttttataaa tattaatgta aattatgtag gtttatttta taaaaatttt taaaagcatt
     8461 taaattattt ctagtttata tttttgtaag taaattttag atatcatcca aagtttatta
     8521 catttttaaa gaaaggaatt attgtgccta ccataaatca attggttaga aaagagcgca
     8581 aaaaagtttt agaaaaatct aaatctccag cgcttaaaaa ttgtccacaa agaaggggag
     8641 tttgcactag ggtttatact acaacaccta aaaaaccaaa ctcagcgtta agaaaagttg
     8701 ccaaagtaag acttactagt ggctttgaag tgatcagcta tatcggcggt gaaggtcata
     8761 acttgcaaga acacagcatt gttttagtgc gtggtggtag ggtaaaagac ttaccagggg
     8821 ttaaatatca catcgttcgt ggtgctcttg atacagcagg tgttgcaaaa agaacagttt
     8881 ctcgttctaa atatggtgct aaacgtccta aagcaggcgc tgcaaaataa tcattcatac
     8941 agacaaatcc gttagatttg attttgtttg agtaaaattt aaaatttgaa ggaaaaataa
     9001 tgagaagaag aaaagctccg gtaagagaag tcttgcctga tccgatttat ggtaataaag
     9061 taatcacaaa atttattaat tctttaatgt atgatggtaa aaaaagcaca gctacaacaa
     9121 ttatgtatgg tgctttggaa gctattgata aaaaaggtgg cgagaaaaaa ggtattgata
     9181 tttttaatga tgcgattgaa aatattaagc ctttattaga agtaaaatct cgtcgtgtag
     9241 gtggtgcaac ttatcaagtt ccagttgaag ttcgtcctgc tagacaacaa gctttggcga
     9301 ttcgttggat tatttctttt gcaagaaaaa gaagcgaaag aactatgatt gataaacttg
     9361 cagctgagct tttagatgca gcaaatagca aaggtgcttc atttaagaag aaagaagata
     9421 cttataaaat ggctgaagca aataaagcat ttgcccacta tcgttggtaa gaaggagtgt
     9481 gtatgtcaag aagtactcct ttaaaaaaag ttagaaatat cggtattgct gctcacattg
     9541 atgcgggtaa aacgactaca tctgaaagaa ttcttttctt tacaggtatg agtcataaaa
     9601 tcggtgaagt tcatgatggt gctgcaacta tggactggat ggaacaagag aaagagcgcg
     9661 ggattactat cacttctgcg gctacaactt gtttttggaa agatcatcaa atcaatctta
     9721 ttgacactcc aggccacgtg gattttacaa ttgaagttga aagatctatg cgtgttcttg
     9781 atggtgctgt tgcggtattt tgttcagtgg gtggggtgca gcctcaaagt gaaacagttt
     9841 ggagacaagc aaataaatat ggtgttccaa gaatagtatt tgtaaacaaa atggatagaa
     9901 tcggtgcaaa tttctacaat gtagaagatc aaattcgcaa ccgtttaaaa gctaatccag
     9961 ttccacttca aattccaatc ggtgctgagg ataattttaa aggcgtaatc gatcttgtaa
    10021 ctatgaaagc tttagtttgg gaagatgata ctaagccaac ggattatgta gaaaaagaaa
    10081 ttccagctga acttaaagaa aaggcagaag aatatcgcac aaaaatgata gaagcagttt
    10141 ctgaaacttc agatgagttg atggaaaaat atttaggcgg agaagaatta agccttgaag
    10201 agattaaaac agggattaaa gcaggatgtt taagtctttc tatcgttcct atgctttgcg
    10261 gtacagcgtt taaaaataaa ggggttcaac ctttacttga tgctgttgtg gcttatttac
    10321 cagctcctga tgaagtggca aatatcaagg gtgaatatga agatggcaca gaagtttctg
    10381 taaaatcaac tgatgatggc gagtttgcag gacttgcatt taaaattatg acagatccat
    10441 ttgtaggaca acttactttc gtgcgtgttt atcgcggttg tttagaaagt ggttcttatg
    10501 cttataactc aactaaagat aaaaaagaaa gaattggtcg tttgttaaaa atgcactcta
    10561 acaaaagaga agagattaaa gtgctttacg caggcgaaat tggtgctgtt gtaggactta
    10621 aagatacttt aacaggggat actcttgtaa gtgaaaaaga taaggtaatc cttgaaagaa
    10681 tggattttcc agatccagtt atttctgttg cagttgagcc aaaaactaaa gcagatcaag
    10741 aaaaaatgtc tattgcttta aataaattag cacaagaaga tccaagtttt agagtttcta
    10801 cagatgaaga aagtggccaa actatcattt caggtatggg tgagttacac cttgaaatta
    10861 tcgttgatag aatgcttcgt gaatttaaag ttgaagctga agtaggtcaa ccacaagttg
    10921 cttatcgcga aactattaga aaaactgttg aacaagaata caaatacgct aaacaatcag
    10981 gtggtcgtgg tcagtatgga catgtattct tacgccttga accacttgag ccaggtagtg
    11041 gatatgaatt tgttaatgat atcaaaggtg gagtaattcc aaaagaatac attcctgcag
    11101 ttgataaagg tgttcaagaa gcattacaaa atggtgtttt agcaggttat cctgtggaag
    11161 atgttaaagt aactgtttat gatggaagtt atcacgaggt ggattcatct gagatggcgt
    11221 ttaaacttgc tgcttctatg ggctttaaag aaggtgctag aaaagcaggt gctgtgatct
    11281 tagagcctat gatgaaagtt gaagtagaaa ctcctgaaga ttacatgggt gatgttattg
    11341 gagatcttaa caaacgccgt ggtcaagtaa atagcatgga tgagcgtggt ggaaataaaa
    11401 tcatcacagc attttgtcct ttggctgaaa tgtttggtta ttctactgat cttagaagtc
    11461 aaactcaagg tcgtgcgact tattctatgg aatttgatca ctatgatgaa gttcctaaaa
    11521 atgttgcgga tgaaatcatc aaaaaaagaa acggttaaat ttttagcggg atttttcccg
    11581 ctttctgtcc tcgtagctca gcaggataga gcgcaaaatt cctaattttg aggccgtgag
    11641 ttcgaatctc gccgtggaca ccattttatg gggtgttatt atgataaaaa ttgctttttt
    11701 tataactttt gtaatttctt ttttggcagc acaaagccca gtaaatttta aagaagataa
    11761 taatataaca aaagaacgaa atatatttaa agaacaatct ccaaaacgca ttaaaattcc
    11821 aacgcattaa aatatatgtc agatctgatt acgctagcac aattatcaca agggtatcgt
    11881 tacaatagtg attctttaat tttagctgat tttattttaa aacaaggaat taaaggcgct
    11941 gtttttgatg taggtgcggg ctgtggtatc ataggtattt tacttaaaaa aaatattgca
    12001 aatttaagtt tatctttgat tgatattcaa aaagaaaata taaaattgat tgaaaaaaat
    12061 ttaaaatcca acaaaataca aggcgatatt tttcatgatg attttaatca atttcaaatc
    12121 ataaaaaaat ttgacttcat agtctgcaat cctccatttt atagacaagg agcttacaag
    12181 agtgaagatc agcataaagc tataagtaaa tttcaggaat ttttaccctt gcatagcttt
    12241 ttagctaaaa caaattctat gcttaagcca aatggtactt tgtatttttg ctatgaagct
    12301 ttagctttag atgaaatttg ttttatttta aaagatatga aaatgaaaat aacaaagctt
    12361 tgctttgtac atacacatca aaacaaaaaa gcaagacttg ttttgataca ggtaaaaaaa
    12421 ggttcaaaat cgccttgtga gattttacct cctttttttg tatatgaaaa tgaaatttta
    12481 agcaaacaaa tgcaagaaat tcacttaaga tttaggttaa aaagttatga tatttgataa
    12541 aaatttttct tatgcttttg atgaaaatgc ttgtgagaaa tgcggtggaa agtgttgcac
    12601 tggagaaagt ggcaatattt ttgcgagcaa ggaagaatta gaagcattaa gaaagcattt
    12661 aaatttagaa agcaaagaat ttgctgaaaa atacttgaga aaagtgggct ttaaaatgag
    12721 ttttaaggag gtcgaatgtg aagatggctt tgcttgcatt ttttttgata ctcaaaaaag
    12781 aaattgtagt atctacgatt ttcgtccaaa acaatgcaga acttttccat tttgggaata
    12841 ttttaaaaca catcaaaagg aattagaaaa agaatgtata ggtatttgtt atttgtctta
    12901 gcagcctttt ttttggcagc ttgtggaagt tcaaaaatca atgttgttta tcctgattat
    12961 acaaaatata aaagcaatga ttttgattta agggttatga aggcttataa ttatgagtat
    13021 tataaacaat acaaagaagc cagagatgaa tttttaagtc tttatcaaga ttataataat
    13081 actaattttt tagaaaatgc atttttactt tctttagcaa acaatcttga caagcaagca
    13141 gagttagata atctagcaaa gccttattta aatcaaaatg acaatcttaa gcgacttagt
    13201 gctctttatg ctttaaattc aaatgatatc aacaatgctc aaaaacttat gaaagagctt
    13261 ttaacaaaaa aggatagtga tcctagaaat ttagagcttt acggagatat tttggttaaa
    13321 aaaaatgatt taaaaaatgc tacaaaatac tatagatctg cttataatca agtgcaaaat
    13381 gaagaaattt tatttaaact cataggaatt tatgcgattt tgaatgatac tttaaatatt
    13441 aaaaatgttt tagaattttc aagaaaaacc aatggttgca ctctcaaaac ttgcgtcttg
    13501 cttgctaaaa tttattttga tgaaaaaaat atcgaagctt taaaaagtat atataaagag
    13561 ctttatcaac ttaccaaaaa taaaagtttt gtattggctt tagttgagct tttaaattct
    13621 caaggcaaaa cagaagaagc tttaaaaatt tctttgcagt atgatttaga tgatgacatt
    13681 aaactcgctt tgtatcagaa tttaaaacgc tttgatgatg ctaaaaaaat gagtttagct
    13741 ctttatcata aaacaaaaaa taaagaatat cttctacgag cggcagtttt tgaatttgaa
    13801 gctgcaaatg aagctaaaaa aatcactcca aaagtaattg attctgtaaa agaaaaattc
    13861 gaacaggcta tcgataaaga tagcaatgct ttgtatttaa actactatgg atatttgctt
    13921 atagattatg atttagatgt taaaaaaggt atagagcttg tgaaacttgc cttagaaaaa
    13981 gatccacaga atttgtatta tttagattct ttagcttggg ggtattataa actaggcgat
    14041 tgtaagcaag catgggaaat tttaaaacaa acattagatg ataaagaatt tgcaaattct
    14101 gatgagagca aagctcatat aaaagcgata aaggcgtgta taaaaccatg atattggata
    14161 aaatttttga aaaaacaaaa gaagatttaa aagaacgcaa actaaaactt ccttatgata
    14221 tgttagggcg ttctttagct tcaaatcctt tctttccaaa agatgtgatt aaggctttaa
    14281 aaagagtaga aaaagaagtt aaaatcatag cagaagtaaa aaaagcaagc cctagcaagg
    14341 gagtcattag agaagacttt gatcctttga gtatcgcttt aaattatgag aagaacaaag
    14401 ctgcggcgat ttctgtttta actgagccgc atttttttaa aggttcttta gaatacttaa
    14461 gtcttatacg ccgttatacg caaattcctt tacttagaaa agattttatc tttgatgagt
    14521 atcaaatttt agaagctttg gtttatgggg cggattttgt attattaatc gctaaaatgc
    14581 taagcatgaa agagcttaaa aaactgcttg agtttgcaag acatttaggt cttgaggctt
    14641 tggttgaaat ccatgataaa gaggatttga gtaaggctat ttttgctgga gcggatatta
    14701 tcggtatcaa tcatcgtaat ttagaggatt ttactatgga tatgagtttg tgcgaaaaac
    14761 ttatcccaca aatcccaaat tcaaaaatca tcatcgcaga aagtggttta gaaaataaag
    14821 aatttttaga gcatttgcaa aatttaggcg ttgatgcttt tttaatcggc gaatatttta
    14881 tgcgcgaaaa agatgaagga aaggctttaa aagctttgct ttaaggaggg aaaatgcagt
    14941 atttgtatgc accatggcgg agtgagtatt ttgaaaaagt aaaaagcatt tgtccatttt
    15001 gtgattgtgc taataagatc aaaagcgatg aagaattagg cgtgattttt agagcaaagc
    15061 attgttttgg agtgatgaac cgctatcctt attctgcagg gcattttatg gtgattcctt
    15121 atatacatga agagcatata gaaaatttaa gtgatgaaat ttggcaagaa atgagttatt
    15181 ttgtgcgttt gggggtaaaa attttaaaag agcaaattca tgcaaatgga gtgaatatcg
    15241 gtatgaattt aagcaaggat gcaggagctg gcatagcttt tcattgtcat tatcatctag
    15301 tgccacgctg gtcaggagat acaaatttta tcacaaccat aggagaaact agggtttgtg
    15361 gcactaatat agagcaagtt tatcaaaaac ttgttttggc ttttaaaaat gctcagtgaa
    15421 gttgaatttg tagagtttca aaaagaaaat ttctcttttt taatcgatgc aagaagccct
    15481 agagaatttt tgcattctca cttgatagga gctttaaatt tttatgcact caatgatgaa
    15541 gaatatcaag aaataggaac aatttataag aaaaatcaag ctttagctaa ggctatgggt
    15601 gcgagttata tttgtcaaaa taccgctaag catatattag aaatcactca aaattttcgc
    15661 ataggagaaa aggtggggat ttattgttct cgtgggggtt tgcgttcaaa gtctatcgca
    15721 gtgattttaa gtgagcttgg ctttagggtg gtgcgtttaa aaggtgggtt taaagcttat
    15781 agaacttttg taacgcatta tttcgaaaat gaaataaatt ttgatttttt tgctctttgt
    15841 ggtaatacag gttgtggaaa aacagagctt ttagaacaac tcccacaagc tataaattta
    15901 gaaaaaatgg caaatcattt aggctcgtct tttggtgata ttttaggaaa acaacctacg
    15961 caaaaagctt ttgaagcaga actttttcac aatattcaaa atttagaaaa ttttgctttc
    16021 atagaaagcg aaagtcgcaa aataggggat attatcttac ctttgaaatt ttatgaaaaa
    16081 atgcaaaagg cttttaaaat ttattgtttt tgttctttgg aaaatcgcgt tagaagaata
    16141 caaaaaattt atcaagaaaa aatgactcct ttgaaatttc aacaatgtgt gcaaaaaatc
    16201 agtccttata tcagcttaaa tttacgccaa gatttgcttc aaagttatga gagaaaagaa
    16261 tggcaaaagc ttattgttat g
//
LOCUS       DARBBO010000032        16198 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.032, whole genome shotgun sequence.
ACCESSION   DARBBO010000032 DARBBO010000000
VERSION     DARBBO010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16198)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16198)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16198
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.032"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..871)
                     /locus_tag="SB854_000824"
     CDS             complement(<1..871)
                     /locus_tag="SB854_000824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG0956839.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKNIYFISFLSGILKEFRLDLSQLFEYCGREFLSVNEMSNFAKLDLAT
                     FSKEFKKCFGQSPKKWLDEKRLQKAKILLKFSKKNINEIANECAFSSVAWFIERFKEK
                     YEQTPKQYQKTKNL"
     gene            complement(868..1473)
                     /locus_tag="SB854_000825"
     CDS             complement(868..1473)
                     /locus_tag="SB854_000825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG0956840.1"
                     /translation="MWDKKIIAISDRKCVQIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGIDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(1463..2608)
                     /gene="thiH"
                     /locus_tag="SB854_000826"
     CDS             complement(1463..2608)
                     /gene="thiH"
                     /locus_tag="SB854_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HEG0956841.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLSQVQSYDESQFSAKDVKNALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLNEVEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNPLKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFAALLGIDDFRKDALATVLHAHFLQQAYPHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(2611..3387)
                     /locus_tag="SB854_000827"
     CDS             complement(2611..3387)
                     /locus_tag="SB854_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HEG0956842.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKAQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNAEEALRIARLSKELGCGELIKIE
                     AISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPAQACEAMQMGVSAVMVNTAIAEAKDI
                     ALMARAFSLAVNAGRAAFLAGLASVSEAKASSPLTGFLRD"
     gene            complement(3390..4193)
                     /gene="thiF"
                     /locus_tag="SB854_000828"
     CDS             complement(3390..4193)
                     /gene="thiF"
                     /locus_tag="SB854_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HEG0956843.1"
                     /translation="MMRVKFNGKEFDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGFLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KINEDNLKSLFKDIDIVCEAFDGAIAKAMIAQNFHRFYKDSILICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKLGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(4190..4381)
                     /gene="thiS"
                     /locus_tag="SB854_000829"
     CDS             complement(4190..4381)
                     /gene="thiS"
                     /locus_tag="SB854_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HEG0956844.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGFKIELIALELNGEIVPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(4391..5488)
                     /gene="dapE"
                     /locus_tag="SB854_000830"
     CDS             complement(4391..5488)
                     /gene="dapE"
                     /locus_tag="SB854_000830"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HEG0956845.1"
                     /translation="MNAKEFLIELLKFESVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSNNAFAPVEKEGFIYARGAQDMKSGVA
                     AFVDAAKNADFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMGVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(5493..6092)
                     /locus_tag="SB854_000831"
     CDS             complement(5493..6092)
                     /locus_tag="SB854_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HEG0956846.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLDNVIFMRSLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSNHAYLMTLGLVVAILFWVSALAF
                     VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFIG"
     gene            complement(6085..6786)
                     /locus_tag="SB854_000832"
     CDS             complement(6085..6786)
                     /locus_tag="SB854_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HEG0956847.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKITDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLNQTSLFISVGTSGAVLPVGRYASMCEKSILNIYEKDANLERYFDKIYIEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(6829..10773)
                     /locus_tag="SB854_000833"
     CDS             complement(6829..10773)
                     /locus_tag="SB854_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG0956848.1"
                     /translation="MITKDNLKQVLENLGFKNKNENYVKTINNYTLLIDYKNQSINYP
                     KEIKIHDKTTSNFSHPENFVVFECVHRLLEKGYKAEHLELEPKWNLGRDRKGGKADIL
                     VKDNENNPYLIIECKTTDSKNSEFIKEWNRMQEDGGQLFSYFQQEKGVKYLCLYTSDF
                     SDKLEYKNYIIQAYDNEEYLKEKELQNSYKKSNNNIELFKTWKESYELQYFKQGIFEA
                     NVNAYKILEITPTFDNLKELKEEGKYHEFAKILRKHNISGKENAFDKLVNIFLCKIYD
                     ETFNKNNLKFGYFGVMADTYANMQDRLMWLYKEAMKEFLGEKITFVSNEDIEKDFKQL
                     KIKTLKEVMQNYIKELKFYSNNDFAFLEVHNKELFLKNALVLKEIVELFANYKLTQNS
                     TNQFLGNLFELFLQKGMKQDEGQFFTPIQICEFIMYSLPLQEMLSKNSKALRVIDYAC
                     GAGHFLNTYANELKRYLTEDELKEHYKNIYGIEKEYRLSKVSKVSSAMYGQNEINILY
                     ADALASFELANTNNLEGEKAKPQIESNSFDLLIANPPYSVKGFLETLSDKSKNTYKLF
                     NDDINIETNNSIECFFCERANQILNDNAKAAIILPSSILNKDSIYKNTREILFQNFDF
                     IAIVELGSQTFGATGTNTIILFLRKKETFKQENHLISQDYSLIKERIEAENLKDSENF
                     YQNYLSAYCDFRKFDKELYSNFLNGNLDSKLAELEAFKDYRNAFRQTSDYKKLKESKI
                     YKESKDKQALEDKAFLAYAQAIEKDKLLYFCLSLNQEVLIIKSPSDIKEQKKFLGYEW
                     SNRKGDEGLKELHEPYLSPLFERGNPQNETKLNTLICKAFLKTLSDIPKDLQGYAGKA
                     RLIDMMDFEKVEFNKAISLNPSNLMQNEMSNPFVNSKYELVEFGQLTKSLGKGRRPAS
                     FADSNGKYPFIKSSRILGKCNEYDFDIEALIIGDGGSANIHYINGKFSSSDHTYIFIN
                     NKKNIILKFIYYVINSNLHILEVGFKGIALKNIAKSFIQSLKIPLPPFEIQKQIVAEC
                     EKVEEQHNTLSLSIKEYQNLIKAMLQKCGIIEDNQEYELNSILENLQKLESKLDFNLL
                     FSFIDDFTNARQEDLKKFKEFVKNIKAILGTFSTPPKQGWNKEKLNEIVSIQSGGTPD
                     RKVKEYWNGNINWVKSEVCQNCYVYDYQVKEKITELGLQKSSAKLLKKETTLIALVGA
                     TIGKIGFLTFESATNQNITGLYPKNLKILNTKYLYYACMDLYGQFRKLGDFAMANSNF
                     IKNLTISLPPLEIQEKIVQNIELVEQQIDFLNFKLEFLEKEKEKILQKYLFS"
     gene            complement(10782..12992)
                     /locus_tag="SB854_000834"
     CDS             complement(10782..12992)
                     /locus_tag="SB854_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEG0956849.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTIPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKIKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVNLNAALRLKNESIIAEFKKFCYT
                     KALMPYLIDTQIHLINNLEALLVRGGFNHAIKAKIIGRSSGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPVLKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGTFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSRKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLIANNLKIIITTHHKRLAMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGEDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKEQKEKNEQEFRTSLRNLEFKFYKAIEEAKKTIQLK
                     DIKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPAPKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLVYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVKL"
     gene            complement(12982..13332)
                     /locus_tag="SB854_000835"
     CDS             complement(12982..13332)
                     /locus_tag="SB854_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956850.1"
                     /translation="MSRFFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLV
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINISKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(13325..14623)
                     /locus_tag="SB854_000836"
     CDS             complement(13325..14623)
                     /locus_tag="SB854_000836"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEG0956851.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKHAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHHAYTQFLDTAKIRVINAEDEFLKNYKNE
                     SIKLYPSKDIKNCTMCIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYAKLGRYK
                     KITAIFEPHRYTRLATNLKEFAKAFEGVDELVILPVYAAGEKPIELDLKAVFLKALFV
                     EDIKREGKFLVASKGQVFDEGLIIGFGAGDISNKLRQKNE"
     gene            complement(14687..16195)
                     /locus_tag="SB854_000837"
     CDS             complement(14687..16195)
                     /locus_tag="SB854_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfatase-like hydrolase/transferase"
                     /protein_id="HEG0956852.1"
                     /translation="MLIFGVFVVFLNLKILNLKLKPVNLRLFPLIALNLILIIVYVIA
                     LRGPFKHVAINVQNYSFSEYSVVNDTMLNPIMAFSWALKQYKEEAALKVITPLKAQEL
                     KEKLFDYLHQSPINLKAEKNHPSVFVNLMESFGLNLADFANTEHNFLGSLDKHFKQDF
                     LFKRFLSSSNGTIPSFANLFFVSPLSNISTSKFQKTYLDLTPIAIYKKAGYKVIFVSA
                     GNGSWQNIKNYLSILGVDEIIDENILMKEYNGAKDSENGYGVADEFLYKKVYDLLQKN
                     PHNTLIIALTISNHPPYKFPQNDLPKLENIPQTLLNMLPYDKNKQDNIIKAYTYANNE
                     FGKFLDKVKQSPFKNSVIIAATGDHRVREMSIDLNSQKAFAYSVPFYLYIPKDLQDDI
                     YYDKDRVGSHKDIFPTLYALSLNNVKYLSVGGRNMLARPSDEKLEFGINDAVWIDKKG
                     IYSGGKGYYFESNDTLKDMNKAFNLDVYTKDFDKFYRELNLYQLAERLGISK"
BASE COUNT         5334 a         2972 c         1970 g         5922 t
ORIGIN      
        1 acaagttttt tgttttttga tattgcttag gagtttgctc atatttctct ttaaatcttt
       61 caataaacca agctaccgaa gaaaaagcgc actcattagc tatttcattg atattttttt
      121 tagaaaattt aagtaaaatc tttgcttttt gcaacctttt ttcatctaac cattttttag
      181 gactttgtcc aaaacatttc ttaaattctt tagaaaaagt tgctaaatct aatttcgcaa
      241 aattagacat ttcatttacg cttaaaaatt ctctaccaca atactcaaaa agctgggaaa
      301 gatcaaggcg aaattctttt aaaattcctg ataaaaaact aataaaataa atattcttat
      361 ttaaaagcaa atgtaaaaaa atctcttcaa atttcaaact cactatagga tctaaaattt
      421 gcgtattttc ttcaaaatgc ggtgaaaaac tttccaaaat tccttgcaaa atcttatcat
      481 tttttaccca aaaaatttca tagttttgaa acttttgatc tagtttaaaa aaatctttat
      541 acttataaat aagctcaatt aaaaatgcat tgtcaaaaaa aaataaataa gcttcataaa
      601 ctcctttact aagtcctaca ttgcttaaag tatagctccc agcttttaaa aacaaagttt
      661 cataagagtt aatcttataa tcttttgatg cagtgtgtaa aattttatat cctttgcgaa
      721 caaaagttaa aagatgactt cctacattaa caaaagtaga atgcgaagta tccgtttgtg
      781 tatatttagc aaaagtgcaa gatttaattt ttttataatt gacacctttt aattgcttta
      841 aatcttctgg taaagaaaga attttattca tcgtaaattt tgcctacatt ctaaaagata
      901 ctttttaaga tctttttctt tcattaaaat ttcacgcatg caaacaccta ctacatttat
      961 atctttaaaa ttttctatat tttgagcatt gataccgcct atagcataaa gtggaatttg
     1021 actaaattca agcaaggatt ttaaaaaatc aatcccttta ggttctaaac ccatcttgca
     1081 agaactttca aaaatatgcc ctacaaaagc ataatttacc ttatagctca tcgcctctaa
     1141 aagctcttct ttgctatgga ctgaagtacc aagtatatga aaatattttg ttaatttagg
     1201 ttcttttctt agtaaagaaa gcggtgcgtg aaaataacga tgtcccaatt ttaaacactc
     1261 cctatcaaaa aaatgcaaaa aacaagtcac tttttgcttt gcgcaaatgc ttaaaacttc
     1321 ttttgctaag tcataatact caaattcgct taaatctttt tctcttaaaa ctatagcatc
     1381 taccttagcc ttagcaagtt tttcaatctg ctttaagaaa tctatttgca cacattttct
     1441 atcacttata gcgatgattt ttttatccca cataaatgct atcactcatc acagcttgca
     1501 aattggatct tttaagcatg gctaaaattt catctacact cctatcatct gaaatttcaa
     1561 actgctcatc gccctttttc tcgcccttat gttcacctat gcccacactc actcctgcac
     1621 tcattttagt agcgccaagc ttgataacct catctctaaa acctattctt tcacgacttg
     1681 aaatggtaat acccgcaaaa ggcaaaaaga gtctataagc acaaagtact tgcaaaagac
     1741 gtttttcact cacatcttta ggatgaattt tagcattatt gataataggt cttaaacgag
     1801 gcactgaaat agaaatttca gcatgcggat aagcttgttg taaaaaatgc gcatgaagta
     1861 ccgtagcaag ggcatctttt ctaaaatcat ctatacccaa aagtgccgca aaagccactc
     1921 cacgcatacc tgcttttaaa gctctttctt gagcattaaa gcgataagga aaaatgcgtt
     1981 tttcaccagc taaatgaatt ttagaatatt ttaaaggatt gtaagtttct tgaaaaacag
     2041 tcacataatc acaacccttt tcatgtaaaa ttttatattc gtcttcattc ataggataaa
     2101 tttcaacgcc tacaacctta aaatactctc tagcaatctt gcaagcattt gctatatatt
     2161 ctacacttgc aaactcccta ccctcacctg ttagcattaa aatttcttct aaaccacttt
     2221 tagcaatggc ttgcatttct tcgtgaattt caacttcatt tagcttagct cttgcgattt
     2281 tattaccttt ttgaaaacca caataaacac atttagaatt acaataattt gacaaataaa
     2341 gtggggtaaa aagagagata gaatttccaa aatatttttg cttgacttta gcggatttaa
     2401 aggctaattc ttctatgaaa tcttctgctg cacttgaaag caaggctttt aaatgctcta
     2461 tgcttaaatg tgtttgattt aaagcatttt taacatcttt agcgctaaat tgactctcat
     2521 catagctttg aacttgactt aaaaccttat ttaaaatttc gctttttatt tcctgcatgt
     2581 gaggtaaata ctgcatataa tcttgcataa tcaatccctt aaaaagcctg ttaatggaga
     2641 acttgcttta gcttcactca cacttgccaa acctgctaaa aaagccgctc ttcccgcatt
     2701 tactgccaaa gaaaaagctc tagccatcaa ggctatatct ttagcttcag ctatagctgt
     2761 atttaccatc actgcactta ctcccatttg catagcttca caagcttgtg caggacttcc
     2821 aatacccgca tctacaatga taggcaaatc aatttcatta agcaaaattt gtataaattc
     2881 cttagcacat aagcctttat tactcccaat aggtgctgct aaaggcatga tagccgcagc
     2941 tcctgcatca cgcatagctc tagctgcgta aagatcagca tgcatgtaag gtagaggtgt
     3001 aaaaccctct ttagctaaaa gctcgcaagc tttaatcgtt tcataattat caggcaataa
     3061 atacctacta tcgcttatcg cttctatctt gataagttct ccacaaccaa gctcttttga
     3121 aagccttgca atgcgtaagg cttcttcggc atttcttgcg cctgaagtgt tgggtaaaag
     3181 tgtgatattt ttagggatat aatcaagtat attagcgatt tcccctgtat ttgcacggcg
     3241 taaagctaga gtgataatct gcgctttagc ttcttctatg gctgatttta taagctctag
     3301 cgaatatttt ccagaaccta aaataaatct tgaatcaaac tcgtatttgc ctatttttaa
     3361 tttatcattt tttaaatttt cttgcatttt tactccttat ttgctaaaag ctctaaaaca
     3421 aggttacttt gatgtcctgc gcaaatattt acccttggcg ccataagtcc atttcctagc
     3481 ttagcaccat ttaccaaatc cccacacaca tagaaatttt tagcaatttt tcttgtttgt
     3541 atgctgttgc tatcaccata gcccgcaagc cctgaagcac agattaaaat actatctttg
     3601 taaaatctat gaaaattttg cgctatcatc gcttttgcaa tagcaccatc aaaagcttca
     3661 caaactatat ctatatcttt aaacaaagac tttaaattat cctcattgat tttcaaagtg
     3721 caaatttcaa cgctgatata aggattaatt tcgctaattt gctcttttaa agcctcggtt
     3781 ttaaatttac ccaaatcact cacacgataa gcttgacgat tcaaattgct aggctcaatc
     3841 acatcaaaat caatcagctt taaaaacccc acaccacttc ttgctaaatt tatcgctata
     3901 tgtgatccaa gtccgcctaa accacacacc gccacgcgcc catttttaag tttatcgtga
     3961 agctttggtg tatgtcttgc tctcatcata gcatctagtg cgtcttttgg aggtaaagta
     4021 tttttttcta tacaaaaaag ctcatcattt tcatttaaag cgatattctc ttttgttgca
     4081 aaaccattga taatccaaac atcattttca tttttgctga tattttcaaa aaattccaaa
     4141 cttgttttaa agtctgtatc aaattcttta ccattaaatt ttactctcat catccacctc
     4201 ctacaaagct tacgatttca gctttatcgt tttcttttaa aatcaaattt tcaaattcgc
     4261 tcttaggtac aatctctcca tttaattcca aggcgataag ttcgatttta aaaccttttt
     4321 ctttgataaa atccataaat ttaagctctt ttaactcaag cttttgtcca ttgataatca
     4381 ttctaaacct ttaaaaattt tctatcaagt ctttaaaaac aagacaaagt ttttcaaatt
     4441 cttctatact taccctttca tcaatagcgt gaattctatc attacaaacc ccaaattcta
     4501 ctacctttac accgtatttt gcaaaatacc ttgcatcact tgtaccgcct ttggtattaa
     4561 gctctggcac ttcatgagtg attttttgaa cgctttcatt cattttttga acgattttat
     4621 tatcgatatt tgtcaaaaaa gcttcgcttg attgttttag ctctaactca tagtttaaac
     4681 catgacaaat tttttctaca taacttttta catcttctaa gcttgtatca ggggaattgc
     4741 gaacattaaa cataagtttt aaatcatttg gagtaacatt acacaccccc atacctccac
     4801 gaatatcagt tataacgatt tttgaaggac taaattcagc acttccagga tcaagatcaa
     4861 aacccgctaa aagctttaac actggtgcaa aatcatgcac aggattgata catttttcag
     4921 gataagcaac atgcccttgt tttccacgga ttaaaagttt tccattgata gaaccacgac
     4981 gccctatttt aatactatcg ccgatttttt taacacaggt tggctcggca accacagcat
     5041 aatcaggtag catatctctt tcttgcatcc attctaaaac agccttagtt ccatatatag
     5101 cttcgccttc ttcatcactt gttaaaataa gactaagtct tgctccttta aaatccgcat
     5161 tctttgccgc atccacaaag gctgctactc cgcttttcat atcttgagca ccccttgcat
     5221 agataaagcc ttctttttcc acaggcgcaa aagcattatt actccaaccc tcgcctgcag
     5281 gcaccacatc tacatgccca ccaaaagcta aatgctcgcc ttcatcttta aattttttag
     5341 tgagtaaaag gtttttaatg ccttcttttt ctataaaaaa agcttcaaaa tcactcagtt
     5401 ccatagcgat gaaatttaaa gctccatcat catttggcgt aacagattca aattttaaaa
     5461 gttcgattaa aaattctttt gcattcattt ttttatccta taaaagtttt atataataaa
     5521 ttaagagcaa aatactctat aattatagct gaaattatat tgattataaa aacaactttt
     5581 gcactaaaaa catgactata tcttgccacc acaaaggcta aagcacttac ccaaaaaagt
     5641 atagccacaa caagccctaa agtcatcaaa taagcatgat tgctgcttaa aaccacactt
     5701 gcagcgctaa gccaaaatcc tatcacaaaa ggatttgaac catttaaaaa agctccttta
     5761 atataacttt tcaaaagact ttctttaaat tctttatgct ctaaatttaa gctttctttc
     5821 ttttttctta gcatcaaata cgccatataa gttaaaaaac aaaaaccaaa aatcgccaaa
     5881 gaacgcataa aaataacatt gtctaagaaa tttaaaagcc caaattgaag caaaaaaaga
     5941 taaagcatat ctatactaaa tgctccaagt cctacagcta tggaattttt aaaagctttt
     6001 agtgcataag ttaaaatcaa aatatttaca ggtccaaaag gcacactcac tccaaagccc
     6061 aaaaaaactc cacttaaaaa agaatcaaac attaccatct ttcataaaat tttctatatc
     6121 aagtgcgatt ttatcaatag cgcttataat atcttctata tagattttat caaaataccg
     6181 ctctaaattc gcatcttttt catagatatt taaaatactt ttttcgcaca ttgaagcata
     6241 acgtcctaca ggcaaaaccg ccccacttgt gcctacgctg ataaaaagcg aagtttgatt
     6301 tagcaaagaa taaagcgtag cataagcagg agcttgctct tcaaacatga ctatattgtg
     6361 tcttaaatcc ttacttttgc attttgggca ttgtttatct gtgatttttt catagcctat
     6421 attaaaaatt ccttcacatt ttaagcagcg aagttcaggc aaaaagccat gcaaatgtac
     6481 tacatcttta caccctgcac gctctagcaa atcatctaca ttttgcgtga tgacaaaaag
     6541 atttttaccc catttttctt ttaattgtgc gattttttca tgagcatgat ttggctttac
     6601 attttgaagt tgtgcccttc ttgcatcgta aaaatcaagt acttttttag gattttttct
     6661 aaaacctgtt gcagagcaaa cctccataac atcgtattct tcccaaagtc catcattatc
     6721 tctaaaagtt ttaagcccac ttggagcaga caaacccgct ccgcttaata tcataatgtt
     6781 tttcatcgct aaaccttata aaatttacaa agtttagcga aaaatgcttt aagaaaataa
     6841 atatttttgc aagatttttt ctttttcttt ttctaaaaat tctaatttaa aattaagaaa
     6901 atcaatttgt tgttctacta attcaatgtt ttgaacaatt ttttcttgaa tttctagcgg
     6961 tgggagtgag attgtaagat tttttataaa attagaatta gccatagcaa aatctcctaa
     7021 ttttctaaat tggccatata agtccataca agcataatat aaatattttg tatttaagat
     7081 ttttagattt tttggatata acccagtaat attctgattt gttgcacttt caaaagttaa
     7141 aaaaccgatt ttacctatag tagcaccaac taatgcaatt aatgttgttt ctttctttaa
     7201 taattttgcc gatgattttt gtaatcctaa ttctgtaatt ttttctttaa cctgataatc
     7261 ataaacataa caattttgac atacttcaga ttttacccaa ttgatatttc cattccaata
     7321 ttctttaact tttctatcag gtgttcctcc gctttgaatg ctaacaattt catttagttt
     7381 ttctttattc caaccttgtt ttggtggtgt tgaaaaggta cctaaaatag cttttatatt
     7441 cttgacgaat tctttaaatt tctttaagtc ttcttgcctt gcattagtaa aatcatctat
     7501 aaatgaaaac aagagattaa agtcaagttt tgattctaat ttttgcaaat tttctaaaat
     7561 agaatttagt tcatattctt gattgtcctc tataatacca catttttgaa gcattgcttt
     7621 gattaggttt tgatactctt ttatactcaa gcttaaagta ttatgctgct cttctacctt
     7681 ttcacactct gctacgattt gtttttgaat ttcaaatggc ggaagtggga ttttaagtga
     7741 ttgtataaaa ctttttgcta tattttttaa agcaataccc ttaaaaccta cttctaaaat
     7801 atgtaaatta gaattaatca cataataaat aaacttaaga ataatatttt ttttattatt
     7861 aataaaaata tatgtatggt ctgaactaga aaatttgccg tttatataat gtatattagc
     7921 actacctcca tcgcctataa ttaatgcttc tatatcaaaa tcatattcat tgcattttcc
     7981 taaaattcta gaactcttta taaaaggata ttttccatta gaatctgcaa aagaagctgg
     8041 tcgccttcct tttcctaagc tttttgtcaa ttgtccaaat tccaccaact catatttaga
     8101 atttacaaaa ggattagaca tttcattttg cattaaatta ctaggattta aacttatggc
     8161 tttattaaat tccacttttt caaaatccat catatcaata agcctcgctt taccagcata
     8221 gccttgtaaa tcttttggta tatcgctaag agtttttaaa aatgctttac aaattaaagt
     8281 attaagctta gtctcatttt gtggattgcc tctttcaaaa agtgggctca aataaggctc
     8341 atgcaattct tttaaacctt catcgccttt tctattgctc cactcataac ctaaaaattt
     8401 cttttgttct tttatatcac ttggggattt tatgattaag acttcttgat taagacttaa
     8461 gcaaaaataa agcaatttat ccttttcgat cgcctgagca taagctaaaa aggctttatc
     8521 ttctaaagct tgtttatcct tactctcttt ataaatttta gattctttaa gttttttata
     8581 atcacttgtt tgcctaaatg cattgcgata atctttaaag gcttctagct ctgcaagttt
     8641 agaatctaag tttccattta aaaaattgct ataaagctct ttatcaaatt ttctaaaatc
     8701 acaatacgca cttagataat tttgataaaa gttttcactg tcttttaaat tttcagcttc
     8761 tatgcgttct ttaatcaaac tataatcttg agaaataaga tgattttctt gtttaaaagt
     8821 ttcttttttg cgtaaaaata aaataatcgt atttgtccct gttgctccaa atgtttggct
     8881 cccaagctca acaatggcaa taaaatcaaa attttgaaac aatatttctc ttgtattttt
     8941 ataaatagaa tctttattta aaatagaact tggtaagata atagcagctt tagcattatc
     9001 atttaaaatt tgatttgctc gctcacaaaa aaagcattcg atagaattat ttgtttctat
     9061 atttatatca tcgttaaaaa gtttataggt atttttagat ttatcactta aagtttctaa
     9121 aaatcctttt acagaataag gcggatttgc tataagcaaa tcaaaactat ttgattctat
     9181 ttgtggtttt gctttttctc cttctaaatt atttgtattt gctaattcaa aagaagcaag
     9241 tgcatcagcg tataaaatat tgatttcatt ttgcccatac attgcacttg ataccttaga
     9301 aaccttactt aagcgatact ctttttcaat accataaata tttttataat gctctttaag
     9361 ctcatcttct gttagataac gcttaagctc attagcatac gtgtttaaaa aatgtccagc
     9421 accacaagca taatcaatca ctcttaaagc tttagagttt ttgcttaaca tttcttgaag
     9481 cggtaaagaa tacataataa attcacaaat ttgaataggg gtaaaaaact gcccttcatc
     9541 ttgcttcata cctttttgca aaaaaagttc aaaaagattg cctaaaaatt gatttgtaga
     9601 gttttgggta agcttgtaat ttgcaaaaag ctctactatt tcttttaata caagtgcatt
     9661 ttttaagaat aattctttat tatgcacttc taaaaatgca aaatcattat ttgaataaaa
     9721 ttttaattct ttgatgtaat tttgcattac ttcttttaaa gtttttatct ttaattgctt
     9781 aaagtctttt tctatatctt cattagatac aaaggtaatt ttctctccta agaattcttt
     9841 catagcttct ttataaagcc acattaatct atcttgcata tttgcataag tatctgccat
     9901 tacaccaaaa tatccaaatt tgagattgtt tttattaaaa gtttcatcat aaattttgca
     9961 aagaaaaata tttacaagtt tatcaaaggc attttccttg cctgatatat tatgcttgcg
    10021 taaaattttt gcaaattcgt gatatttgcc ttcttcttta agttctttaa gattatcaaa
    10081 agttggagta atttctaaaa ttttataggc attgacattt gcttcaaaaa taccttgttt
    10141 aaaatattgc agttcataac tttctttcca agttttaaaa agttctatat tgttattaga
    10201 ttttttataa gaattttgta attccttttc ttttagatat tcttcgttat cgtaagcttg
    10261 tatgatgtaa tttttatatt ctaacttatc gctaaaatca cttgtataaa gacaaagata
    10321 ttttacacct ttttcttgct gaaaataaga aaaaagctgt ccgccatctt cttgcattct
    10381 attccattct tttataaatt cactattttt agaatctgtg gttttgcatt ctataatcaa
    10441 ataaggattg ttttcattat cctttactaa aatatcagcc ttaccacctt ttctatccct
    10501 gccaagattc cattttggct ctaactctaa atgttcagcc ttataacctt tttctaaaag
    10561 tctatgcaca cattcaaaaa ctacaaaatt ttcagggtgt gaaaaattag aagtagtttt
    10621 atcgtgaatt tttatttctt ttggataatt aatactttgg tttttataat ctattaaaag
    10681 agtgtaatta ttgattgttt ttacataatt ttcattttta tttttaaagc ctaagttttc
    10741 taaaacttgt tttaaattat cttttgtaat catttatttc cttataattt taccacctta
    10801 gcaccaaaac caccttgatt gatcggtgcg tcattaaagc ccttgacact tttatgagtt
    10861 ttcaaaaact ctcttacagc aaaggcaagc tttcctgttc ctataccatg gtaaactaaa
    10921 acttcatcaa agcctgcaag caaagcatct gaaataaatt tatcaagcct tgaaatagct
    10981 tcatcactcc taagcccgtg caaatccaag ctaacgctaa gattagtcgg ttttgccaca
    11041 ctaatgcttg tttttggact tattttaggt gcaggagtgc tttttttaag cagttttaaa
    11101 ggcacacgaa gtttgatccc atcactttca accatagcat cgtttttaga aatgcttatg
    11161 attttaccct taattttttc atattttaca aaatccccca cacgcaattc ttcgttttgc
    11221 tccatacttg gcaagatgat ttctttttta agttcattgg ctttattaag acttctttgc
    11281 ttgtctttta tatctttaag ctgtatggtt tttttagctt cttctatggc tttgtaaaat
    11341 ttaaattcta aatttctcaa actcgtacga aattcttgtt catttttttc tttttgctct
    11401 tttaaggaaa gtaaaatttc atcgactttt tgctcttttt tctcgacatt ttcaagctta
    11461 gcttttagtt ctaattcaag attgatattt ttacccacaa gctcttctaa attttcttta
    11521 tcctcgccat aaagcttttt agcctcgcta actaaattcg gcggaatctg ataacgcaaa
    11581 gcggtttcaa aggcataaga ttttcctata gtacctttta aaaactcata tttcgggcgt
    11641 gaaagctctt catcatataa agcagcaatg agttcaactt gctcattctt tgctaaaagc
    11701 atggcaaggc gtttgtggtg tgtagtaatg atgattttaa gattattagc tatgagtttt
    11761 gaaattaaca cactatacaa acaagccgct tcttcaaaat ctgttccaag ctctatttca
    11821 tcgataccta aaagcaaatt tttcctagaa aaaagtctag aaaaatgcaa cattcttcct
    11881 gcaaaggttg aaatgtcgtt tttaacattt tgcggatctt ctatgatggc atcaaattct
    11941 ttaaaagtac cgattttact ttcacttgct ttgatatgca taggcaaaag atgtttagct
    12001 aaaaatgctg cgcttagcat ggattttaaa agcatggatt ttccacctgc atttacccct
    12061 gtgatgatta aaacttgttt tttaaattcc aaactcacgc tttttggatt ttttaagaca
    12121 ggatgagcga aatttttaag cactaaatcc gtactttgat cacacaaaac aaattcaaaa
    12181 tccctttttt tagcaagcaa aaccctagca ctataatgat caaaaagatc aaaggctgta
    12241 ttgataaatt ttaaaaaagg tagatttttt gctaaaaaag ctgagaaatt tttagcgtat
    12301 tcataataaa tttcttcttt ttgatttttg attttttcta tatcattttg caaattttca
    12361 acacttaaag gcacgatata aaagccaccg ccactacttc tacctatgat ttttgcttta
    12421 atagcgtgat taaacccacc tcttacaagc aaggcttcaa gattgtttat aagatggatt
    12481 tgtgtatcga taagataagg cattaaagct tttgtatagc aaaatttctt aaactcagct
    12541 attatgcttt cgtttttcaa tcttagagcg gcattaagat ttacaagtct ttcatctaaa
    12601 ctttctttta actccccttt ttcatcgaaa ttcaaacaaa gctccaaagc tccactaaca
    12661 aattctatct tttgtagcca agagtctaaa tttgttccta gttttatttt ttttaacttt
    12721 tcaaaataac gaaaaatttt tacaaattca aaaatttcat ctaaatgcaa aattccttgc
    12781 ttacttaaat gaaccaaggc tttatcaaga ttgctaagct ctggtatagt aggaaattcc
    12841 acctcacaaa gctcatgtat gcgtttaaaa tgaagattag aatctccttg caaaaaaatc
    12901 tccttatctc ttgcaaaaag agctttaaac tcttctaaat agctgtttaa atcaagcttt
    12961 gagatcaatt cttcttttgt atcattcatc atttaaccta caatctttaa tatctatgat
    13021 taaagaatta aaactttgat tattatcctt tgaaataaaa cttcctgtcc caaattcgta
    13081 attaaaataa gctttagaga tatttatatc tttacataaa atatttttat tttgattaaa
    13141 agctacgata atatctgttc ttaaatgact tttttgtgta ttttcaaatt caaaaaatac
    13201 tactaaaaca ataaaaatca caagtaaaat accaaaaaaa ggtttagttt ttttgcctaa
    13261 tttttcacgc aaagcaaaag tgattaaggc taaaattaaa ataattaaaa aatataaaaa
    13321 aaacctactc atttttttgc cttaatttgt tgctgatatc tcctgcgcca aaacctataa
    13381 tcaaaccttc atcaaaaact tgccccttag aagccaccaa aaatttaccc tctcttttga
    13441 tatcttctac aaataaagcc ttaagaaaaa ccgcttttaa atcaagttct ataggctttt
    13501 ctcctgcagc ataaacaggt aaaattacaa gctcatcaac accttcaaaa gcctttgcaa
    13561 attcctttaa atttgtagcc aaacgcgtgt agcggtgagg ttcaaaaatg gctgtaattt
    13621 ttttatatct acctaatttt gcgtattctt gtgctgcgct taaagtcgct tttatttcgg
    13681 taggatgatg accataatca tcgattaaaa ccaaattttc atcagcatgt aaaatatcaa
    13741 aacgcttttt aataccttga taatttttaa gcctagttct tatcgtttct atatctaaga
    13801 aatttaaagc cgccaaaatc gccaaagacg catcaagagc taaatgatat cccataccaa
    13861 aaactttaaa ctcacctaaa tcttttaact caaagcttgt aaaaggtttg aaattttcta
    13921 tacacatggt gcagtttttg atatctttgc tcggataaag cttgattgac tcatttttat
    13981 aatttttcaa aaactcatct tcagcattaa tcacgcgaat tttagccgtg tctaaaaact
    14041 gcgtataagc atgatggagt tttgaaactt cattaccata atgatctaaa tgctctgctt
    14101 ccgcattggt aactatagcc aaataaggat ttgaatttaa aaaagaacta tcgctctcat
    14161 cagcttcaaa aacaagattt tggctttctt tataaatcat atttgaacca aattctttta
    14221 aaatcgctcc gatgatcaca gaagcatcat caagcaaaga agccaaaata cttgaagttg
    14281 tgctttttcc atgcgctcct gcaactgcaa aaacacgctt atcttctaaa ataagaggca
    14341 aggcctcctt gcgtgaaaga catttaatgc ctaattcttt agcgtgttta aattcaggat
    14401 tttcttcttt gatagcagca gaataaataa ctaaatcttt gtttaaaata ttgtctttat
    14461 gatgagggat actgacctta accccttctt tttcaagttc tttagtgatt ttactctctt
    14521 taagatcact tccgctaatt ttaaaacctt tttcttttaa aaatcttgct aaagcggaaa
    14581 ttcctatacc gcctatgccg ataaaatgga tattttgcat catttaaacc tttatacttt
    14641 aaaggctaaa ttttagcact tttttactaa aaagaaaata taaatcctat tttgaaatgc
    14701 ctaaacgctc ggctaattga tataaattta actctctata aaatttatca aagtctttag
    14761 tataaacatc aaggttaaaa gctttattca tatcttttaa agtatcatta ctttcaaaat
    14821 aatacccttt accgccacta taaatacctt ttttatcaat ccatacagca tcgttgatcc
    14881 caaattctaa tttctcatca cttggtcttg ctaacatatt tcttccgcct acgcttaaat
    14941 acttaacatt atttaaactt aaagcataaa gagttggaaa aatatcttta tgagatccta
    15001 cacgatcttt atcataataa atatcatctt gtaaatcctt aggaatataa agataaaaag
    15061 gtacactata agcaaaagct ttttgggaat ttaaatctat actcatttcg cgtactctat
    15121 gatctccagt tgctgctata atgacactat tcttaaatgg actttgtttt actttatcta
    15181 gaaattttcc aaattcatta tttgcataag tataagcttt gataatatta tcttgtttgt
    15241 ttttatcata aggaagcata ttaagcaaag tttgtggaat gttttctaat tttggcaaat
    15301 cattttgcgg aaatttataa ggtggatgat tagaaatagt aagagcaatt ataagggtgt
    15361 tgtgtggatt tttttgaagt aagtcataaa cttttttata taaaaactca tcagctaccc
    15421 cataaccatt ttcactatct tttgctccat tatactcttt cattaaaata ttttcatcta
    15481 taatctcatc tacccccaaa atactgagat aatttttaat attttgccaa gatccattac
    15541 ctgcacttac aaaaatcacc ttatatcctg ctttcttata aatagcaata ggtgttaaat
    15601 ccaaataagt tttctgaaat ttgcttgtag aaatattaga caatggactt acaaaaaata
    15661 agtttgcaaa acttggtata gttccattac tagaactcaa aaaacgtttg aataaaaaat
    15721 cttgcttaaa atgtttatct aacgaaccca aaaaattatg ttctgtattt gcaaaatcag
    15781 ccaaattaag cccaaaactt tccattaagt taacaaatac actaggatga ttcttttcag
    15841 cttttagatt tataggactt tgatgcaaat aatcaaaaag tttttcttta agttcttgtg
    15901 ctttcaaagg tgtgataacc ttcaaagccg cttcttcttt atattgtttt aaagcccaag
    15961 aaaatgccat aattggattt aacattgtat catttacaac actatactca ctaaaagaat
    16021 aattttgtac atttatagcc acatgcttaa aggggcccct taaggctata acataaacaa
    16081 taattaatat taaatttaaa gctatcaagg gaaataatct taaattaaca ggttttagct
    16141 ttaaatttaa tattttcaaa tttaaaaaaa ctacaaaaac tccaaaaatc aacattaa
//
LOCUS       DARBBO010000033        15930 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.033, whole genome shotgun sequence.
ACCESSION   DARBBO010000033 DARBBO010000000
VERSION     DARBBO010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15930
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.033"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(41..2407)
                     /locus_tag="SB854_000838"
     CDS             complement(41..2407)
                     /locus_tag="SB854_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HEG0956853.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIAGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFAPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSIRDQQILEKMIDDAKNWMRTFTSDKNFSEVLHIMLKTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDT
                     FAKMSKLDPSYEETLKDLALVLSHTNRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFMYLDTLAKINKNEESLAVLTDLLKLKLSDKDKA
                     RALYIQALTYERMQNIQAEKESLKQCLEIKSVSNWQNLCKSKNQILNQ"
     gene            complement(2429..3817)
                     /locus_tag="SB854_000839"
     CDS             complement(2429..3817)
                     /locus_tag="SB854_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HEG0956854.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIATRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHVLFMKNDRVHNIKFSFIQNFILAFC
                     VCVSTFAILLML"
     gene            complement(3807..5294)
                     /locus_tag="SB854_000840"
     CDS             complement(3807..5294)
                     /locus_tag="SB854_000840"
                     /EC_number="1.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HEG0956855.1"
                     /translation="MLNYLIFFPLIAAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGASFDYNLSFKILKFFSLHVGVDSIALVLMLLSSLMIFLSFLFLKLKQKALVSC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPVLVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGTLFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIENFSLRLREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            complement(5296..7086)
                     /gene="nuoL"
                     /locus_tag="SB854_000841"
     CDS             complement(5296..7086)
                     /gene="nuoL"
                     /locus_tag="SB854_000841"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HEG0956856.1"
                     /translation="MQNLALISLFSPFIAFLFASCFALSEKKQFVGIICSLLVALSAF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDRNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVARDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKFTAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLM
                     VLAIIPGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGVILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPRFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQNIS
                     QKMIMPNSLNLMLRFLVATFVILLILVWMV"
     gene            complement(7088..7384)
                     /gene="nuoK"
                     /locus_tag="SB854_000842"
     CDS             complement(7088..7384)
                     /gene="nuoK"
                     /locus_tag="SB854_000842"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HEG0956857.1"
                     /translation="MIEKYFFIAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            complement(7381..7899)
                     /locus_tag="SB854_000843"
     CDS             complement(7381..7899)
                     /locus_tag="SB854_000843"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HEG0956858.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSAIL
                     LLAMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     VLTHKELTKEKQ"
     gene            complement(7896..8537)
                     /gene="nuoI"
                     /locus_tag="SB854_000844"
     CDS             complement(7896..8537)
                     /gene="nuoI"
                     /locus_tag="SB854_000844"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HEG0956859.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVENYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDVMIERALENQNTQEQGENK"
     gene            complement(8547..9545)
                     /gene="nuoH"
                     /locus_tag="SB854_000845"
     CDS             complement(8547..9545)
                     /gene="nuoH"
                     /locus_tag="SB854_000845"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HEG0956860.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFVSLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVSII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGMFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALTVLL"
     gene            complement(9538..12000)
                     /locus_tag="SB854_000846"
     CDS             complement(9538..12000)
                     /locus_tag="SB854_000846"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HEG0956861.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFIPHIHKNGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKKIIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVVGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            complement(11997..12689)
                     /locus_tag="SB854_000847"
     CDS             complement(11997..12689)
                     /locus_tag="SB854_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956862.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKEVKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSKQFLQIAKCKDQSEVEILAKDFSFKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            complement(12686..12913)
                     /locus_tag="SB854_000848"
     CDS             complement(12686..12913)
                     /locus_tag="SB854_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HEG0956863.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            complement(12910..14136)
                     /gene="nuoD"
                     /locus_tag="SB854_000849"
     CDS             complement(12910..14136)
                     /gene="nuoD"
                     /locus_tag="SB854_000849"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HEG0956864.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFLNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTSPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(14138..14932)
                     /locus_tag="SB854_000850"
     CDS             complement(14138..14932)
                     /locus_tag="SB854_000850"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HEG0956865.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVEFDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIADKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKTYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFADDKDTLNF
                     ARLYHEVPKGGQKKEISFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            complement(14929..15432)
                     /locus_tag="SB854_000851"
     CDS             complement(14929..15432)
                     /locus_tag="SB854_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B"
                     /protein_id="HEG0956866.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLI"
     gene            complement(15414..15803)
                     /locus_tag="SB854_000852"
     CDS             complement(15414..15803)
                     /locus_tag="SB854_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HEG0956867.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGFLE
                     VFVFIVLLGVGFLYAYKKGAFAWQSIK"
BASE COUNT         5960 a         3024 c         1899 g         5047 t
ORIGIN      
        1 ttagataact agctaaaaag ctagttatct ctaaatttac ttattgattt aaaatttgat
       61 ttttactctt acataaattc tgccaatttg aaacactttt gatttcaaga cattgtttta
      121 aactttcttt ttcagcttgt atattttgca ttctttcata agttaaagct tggatatata
      181 aagctcttgc cttatcctta tctgaaagtt ttaatttaag caaatctgtt aaaacagcta
      241 aactttcttc atttttattg attttagcca aagtatcaag atacataaat tccaaattag
      301 gactaaaaag atttatacct ttaaaatttt gatagtcaat ggccttaggt gcgtaagtta
      361 aaatcgttgt ttgcatattg tgatcattag cataagaaag taaagcatca taagcttcca
      421 ccatactaaa attcattgga aaactttcta aaatttgcaa aattttaatg gcttgattgt
      481 agtcatttaa gcgcaataaa gacaaaaatt gcaaataata agccttaaaa ttctcatcat
      541 cgctttttaa aattctagaa ttagctatat ctttagaaat tttgatcacc tgaggatatt
      601 gtttattatc aaaaagaata gatgcttttt gaagaccata aaatatagaa tcttcattat
      661 aatttttatc tatataatca agtgcttgtt caacattaga agttctgata agacaagcta
      721 acatttgttt tttattctca attttctgac ctatatcata agcactaaaa cgcataaaaa
      781 tatttgcagc attgatacaa ttatcagctt ttatggcatt ttttaaatca ttaatggctg
      841 ctttctctaa aaattgagta gcatttggaa tttttttact ttctataaga tctttataag
      901 ctaaaatagc actaaaattt ccctctttat aataaagtgc aacatcttca tctaaagctt
      961 tatttgcaat attctcatct ttatttgcat attgcttcat taaatctgta taacgctgat
     1021 gcaaaaagct tgcattatta tcacctaaag caaagaatac ctcatcactt gcttttttaa
     1081 tttcatctaa atacttacca tctaaataat catccatata caaatcaagg tattttttag
     1141 catcactaga tctgttagta tgtgataaaa ctaaggctaa atcttttaaa gtttcttcat
     1201 aacttggatc aagtttggac attttagcaa aggtatcttc ataaatactt gcacttatat
     1261 caaattgtcc tttttgatta aataatttag caagttctaa agatcttgga atatcttttc
     1321 caaaatattc aggattggct tttaaaatgg tattaatata ttctatagct ttatttactt
     1381 gctcatttga aagcaaattc tttgccaaac tcatagctgc tcttgcagct aaatctaaat
     1441 tttttgtatt aaaataagta ttttcataga tatttacagc tttttctttt tcatttaaat
     1501 tataaatata atctgcataa tcaagttttg ataactgagt aaaataatta ttaggttgtt
     1561 cattatccaa aatcgacatt gtatactcta catcagcacg ctgagctaaa gcgatataag
     1621 tttttaacat tatatgtaaa acttctgaaa aatttttatc acttgtaaaa gtacgcatcc
     1681 aatttttagc atcatcaatc atcttttcta aaatttgctg atcgcgtata cttggatctt
     1741 gagtgtaaag tttattttga gctcttaatt tataaagtat aaattcacta gtaaaaatac
     1801 tgccacgata tctattgata gcattttgtg catcaatcac cacttgattg taattagcct
     1861 tatcgtattc ttttttgatg cgtaaataag tattgatatc tgcactttga ggaataacaa
     1921 caggatcaga atttaaatcc aaagctccaa cataaggcaa actctcatgt ggaaaattga
     1981 tattaaaatc aagtccatca tagtctttaa taggtgctag ttctggtgca aaaataaaag
     2041 taaaagcctt acttttatgc gaacttgatg aactgagttc tttatctata taaatatttt
     2101 gagaagtgtc aaacattctt gcttgtattt ttggcaaaat gatcatttta attttttgag
     2161 cttcttgtat aaattttaaa tcaaaagcag aaaaactctg atcttttaat ttattatcaa
     2221 ccatacctgc aatatcacat tcaaaatgaa cttttgcttc ggtaataaat ttttgacatg
     2281 taaattctaa atcattactc gcatgtaaaa ctgcaaaagc ttgattattt tcgcgacccg
     2341 tgtttaaaac aagctcaaaa gcaaaagcat ttaaaaaact taataaaatt aaaaataata
     2401 ttctcataaa ataattatag caaaactctt ataacattaa caatatagca aaagtgctta
     2461 cacaaacaca aaaagctaaa ataaaatttt gtataaaact aaacttaata ttatgaaccc
     2521 tatcattttt cataaataaa acatgaatta aaatctttaa atacgcataa agcataataa
     2581 cagaagataa agccacaaaa agcgccaaat accaatatcc atttaaaatt gctgtattta
     2641 aaatcataaa tttaccccaa aacactccaa aaggcgggat acctgctaaa gaaagcacac
     2701 taatgcttaa acaaaaagca attaaaggtt ttttaaccaa aagcccattt aaactctcat
     2761 aagaattatt ctcataattg cttaaaatca taaatacagc ataatttgca aaagcaaata
     2821 aagtccaata tccaaaaata gcaagcaaaa ttccatcaaa attttgttct tttaataaag
     2881 gaatgcaagc taccaaaacc aaagaagaat gcactacaga actataagca aacatttttt
     2941 tgatattgtt ttgacttaga gccgcaaaag cacctataag catagaaaaa atcgctagaa
     3001 ctattatgat atattcaaaa cctgtattat ttaaaaaatc aaacaaacga ataaccacaa
     3061 ccaacatggc aacttttggc acaactgaaa taaaagcaac caaatttgta tgtgctgcat
     3121 aatacacatc tttaagccaa aaatgaaaag gtgccaaaga aagcttgatt gcacaaagaa
     3181 caaaaatcat cactccagca cccaaaagca tgggatcttt ttgaaactca ttttttaatg
     3241 ctaaattagc agataaatct aaagttcctg tttttaaata aataaaagct acagccataa
     3301 caaaaaaccc agctcctaca gccgctacac taaagtattt tatcgcactt gaaatagcat
     3361 tatcacttcc gcgcgttgct attaaagtat aaagcgctaa agaagaactt tcaagtccta
     3421 taaaaataag tactaaattt gagcttgaaa ccatcaaaag caaagatgca atcataaata
     3481 aaaataaagc ataaaattca ccttgatttt cttctttttg cattaaaaga tataaaaatg
     3541 aaaaacacaa aattaccaaa gaagcataaa atgaaacaat atcattattt aaagtggcca
     3601 aaaaagcttt tgcttctaag ccttgagcat ttgcattatt taaaatcaaa aaagcactta
     3661 caattaaaga taaagaactt ataccgatat aaaacgatcg atgaaatttc caaaaaccag
     3721 agcaaagcaa aagaactatt gcagttgtaa ttaaaaataa aaatggataa gataagctta
     3781 tatttaaaag ttctaaattt aaaaaattat ttaacatttg cctctcctat tttagataaa
     3841 aaatctaaag tattttgctc aacagctcta atattcattg tttttataag attatccaca
     3901 tctttttgta tcggctttaa aagtatattt ggcataagcc ctagtccaaa aatcattact
     3961 acaatacaca caagtgccac tatttctcta aggcgtaaag aaaaattctc tataaagctt
     4021 tgtttttgca tgaaaaatat ttttctaaat actgcgaaca tataaatcgc tcccaaaata
     4081 atcaccaaac ctgccaacaa agcgtaaaat aaattaatct ttgctatacc taaaagaatt
     4141 aaaaactctc ccacaaaaga aacagttaaa ggcaaagaaa cgcttgcgag taaaattaac
     4201 ataaagaaaa ttgaaaataa aggtgctttt ttggccaaag aatggtaaaa agaaatatca
     4261 taagtatgat atctttggta taaaagttca accattaaaa ataaagttcc tgttacaata
     4321 ccgtgtgcaa acatataaaa aactgcacca ctaataccca aagcatttaa agaaaaaatt
     4381 cccaaaatca tcacaccaag atgtgaaata gaactataag cgatcaattc tttaatattt
     4441 tctgctctat aagcaattaa agcattataa acgatactca ctatacataa agctacaatt
     4501 aaaggcataa aatacacact cgcatctgga aaaagcggta aacaaaaaag caaaaatcca
     4561 aaaggagcca ttttaaaaac tacaagcatt acagaaacaa gaacaggcga atttgcataa
     4621 accttaggtg cccaagtatg aagtggaaat aaaggagctt tgatagcaaa agcgataaaa
     4681 aatgctccaa aaagtaaaag ttgctctgta aaatttactg ccgaggcatt atttttccaa
     4741 atttctaagt caaaagtgaa gatgtttaaa agttgataat ttaaataagc ttgataaatc
     4801 aatgccacaa gcattaaaat tgaacccgca aaagcataga taaaaaattt cacccctgct
     4861 ctaaaatctt taccataaac tcccataata taaagcaaag gcaaaagaga aaattcccaa
     4921 aaaacataaa acaacaaacc atcttttgcg ctaaaaagtc ccataatagc aaattctaaa
     4981 aagaatatac aagatacaag tgctttttgt ttcagcttta aaaataaaaa gcttaaaaat
     5041 atcatcaaag aacttaaaag catcaataca agtgcgatac tgtctactcc tacatgaagg
     5101 ctaaaaaatt tcaaaatttt aaaagagaga ttataatcaa agcttgcccc ttgtaaaaaa
     5161 tccgcaaaaa tatccaaatt taaagccaaa atcataaaac ttacaacaac gctaaaaacc
     5221 ttaacgcctc cacgatttaa aagcaaaacc acaaaagcag caatcaaagg aaaaaatatc
     5281 aaataattta gcattttaca ccatccatac caaaatcaac aaaatcacaa aagttgccac
     5341 caaaaaccta agcattaggt ttaagctgtt tggcataatc attttttgtg aaatattttg
     5401 agaatacaaa gcaatttttt caactattct atcaaaaata taaagatcac aatgttttaa
     5461 aatcgcacat aaactttcat attttgaaac gataaattga tgataaaacc taggaataaa
     5521 ataatcatta cttaaaagtt tgtgaatttt attttcttca atactttcct taaaccaaga
     5581 atttttataa gcaaaaatag ccaaaattac acccaaaata gctgctacac tcgcacaaat
     5641 cattacaatt tgattttgtg catcaataaa aactaatttt gtgcttaaat attcaaaaaa
     5701 actatgttca aaaaatcctg gaataatagc taaaaccatc aaaggactca tagccaagag
     5761 tgctatttta cttgcttcat gcggatgttc atcatgtctt gcaggggtaa aaaataccaa
     5821 cattaaaagt ctaaagctat aaaatgctgt taaaaaagct gcgattaaaa gcactaaaaa
     5881 aataccatgg tgaaaagaaa tgaaagaata tcctaaaatc aaatctttag aaaaaaatcc
     5941 tgcgaaagga taaattcctg ctaaagctaa agatcctata cacatcaaaa tagcggtaaa
     6001 ttttaaaggt ttaaaaagtc cacccatttt tttaatgtct aatttatcat tcatagcatg
     6061 cattacattt ccagcaccta aaaaaagtaa agatttaaaa aaagcatgtg tagctaagtg
     6121 aaataaagct ataccataag ccccaagtcc tgcagccaca aacatatatc caagttgcga
     6181 tagagtagag taagcaataa tgcgttttaa atccctagcc accaaagcca tagaggctgc
     6241 aaaaatcgct acaaaagctc cgagtaaggc aataatataa gaaacctcag gaactaaatc
     6301 ataaagcgtg ctagcacgaa ttaccaaata aacccccgct gttaccatgg ttgctgcatg
     6361 gattaatgca gaaacaggag ttggccctgc catagcatca gcaagccaag tgtgaaaagg
     6421 aaattgtgca gattttccca tagcccctat aaataaacaa gttgcgatta agatcaaagc
     6481 gttgcgatct aagctttgtg ccatggaaaa aacttcatca tattttaaag ttcctgcttg
     6541 taaataaagc caaaaaattc ctaaaagcat acccaaatcc gcaatacggt tcataataaa
     6601 agcttcatta gccgcaaaag aataagtatc atttttatac caaaaaccta taagcaacca
     6661 agagcaaagc ccaacgcctt cccaacctac gaaaagtcct aagaaattat cactcataac
     6721 taaaaaaagc atagaaaaga caaaaagccc caaataagca aaaaatttat taaaaccctc
     6781 atcatgagcc atataaaaaa tactataaaa atgcacacaa gtagctacaa tacctacaac
     6841 actcatcata gtaagcgaaa tagcgtctat atcaaagcca aaatttactc cagcaaacca
     6901 ttcaaacaaa ctcacattaa aagcttcatt gcaaaaaagc aaatacaaag aacaaaaagc
     6961 actcaaagca actagaagtg aacaaattat ccctacaaat tgttttttct cactcaaagc
     7021 aaaacaactt gcaaacaaaa aagctataaa aggactaaaa agagaaatca aagctaaatt
     7081 ttgcatacta agcctccact tcttttaagc tttttaattc caaagtgcct tttcttctat
     7141 accaaagcac gcacaaagct acaccaacag ctacttcaca agccgctaca cccatgataa
     7201 aaagtgcaaa aacctgtcca tttaaatcat tgtgcatttt agaagccgct actaaggcta
     7261 aattagcact atttaataaa atttcactcg aaataaaaag catgatgaga ttttgtcttt
     7321 ttaaaatacc tacaagccct atgacaaaca ttaaaatagc tataaaaaaa tacttttcta
     7381 tcattgtttt tcctttgtta gctctttatg agtaagcact atagcacaca ctaaagcaat
     7441 caaaagtaaa atagctataa actcaaaagc caaaagatat tttgaaaaaa tcgctaaagc
     7501 cagttgttta ttaaaatcaa acaaagcagg atcgtttaaa ggcaaatccg tgctgatatt
     7561 ttggtattta aaacctataa gcatggccaa aagtaaaatc gcacttaaaa ccaccaaagt
     7621 aaaaaaactt tttttagctt taagttgttc tttaaattct ttagaagcat caaaaaacat
     7681 catcgcaaaa ctataaagtc caagcacagc tccactataa acaataattt gtatcacacc
     7741 taaaaactct gcatcaagta aaaaataaaa tcccgataaa aacaccattc cacccgctaa
     7801 agccgaaaga gaataaagca tatttttact taaaaccgca atgccaaaaa agcctaaaac
     7861 cactacacta aaaaatacaa aagccaaatt ttctatcatt tattttctcc ttgctcttgt
     7921 gtattttgat tttctaaggc tctttcaatc atcacatcat aataatttgg cgttttttta
     7981 acccacaaat ttgcatcctt tctaagactt cctgctcctt caaattcaac ttgattttta
     8041 agcttatcaa taggagttaa aaaatcttgc ttatagccaa aataagacct ttgctcggct
     8101 gcattttcat actctgtgcc atgcactata gcaagttcag ggcaaacctc agcgcaaaaa
     8161 ccacaataaa tacaacgccc taaattaata ctataatttt ctactttttt acgcccattt
     8221 tcatctaaag aagtttccat tctgatacaa ttactaatgc aaattttttc gcaaagccca
     8281 caacctatac atctttcatt ttcgctttct ataaaacgca tcaaacgatg aacagcacgg
     8341 taacgattgt caagctttac cttttcaaaa ggatatttaa tcgtagcgct attatttctc
     8401 ttaagtaatt ctctcatcat cacaaaaagc cctacaaaaa gctctagttt aacgcttcta
     8461 cgcaaagctt gtgaaatttt ctcccaagtg ctaacaggag tttttctttt ctcatctact
     8521 aaataataat ttttcatatc aaactcctat aaaagaactg tcaaagcagt gattaaaagg
     8581 tttaaaacag ctaaagggat taagatcaaa tagcacattt tcatcacttg atctggacgc
     8641 aattgcggaa aagcagctct tgcccaaaaa taccaaaaga aaataaaact tgattttact
     8701 atcatcataa tccaaccagg aataatccaa aagctattaa aaccccctaa aaacaaaaga
     8761 gtgaccaaaa tagctccagc tatcatagaa gtatattcac ctatgaaaaa cataccccat
     8821 cttaaacccg aatactccgt tccataaccc gctacaattt cagcatcatt ttccgtcaaa
     8881 caaagcggag ttctattagt ctctataaat aaagcaatta taaaaagcac aaaagccaaa
     8941 ggttgtttaa aaataagcca agaaaaaaat ccatcgcttt gataattgtt aatatccacc
     9001 aaagaaaaag aacctacaag cattataata gcaatcaaag ctaaagctcc tacgctttca
     9061 taggaaataa tcgatacaag ccctcttgca gcccctaaaa tcgaccattt attattactt
     9121 gcaagtccac ccaaaaacac cgcataaaag caaagtcctg aagtgccgat gacaaaaagc
     9181 aaagctacat tgatatctgc cactataggc tgaatcaccc ttccaaataa agtaaattca
     9241 ggtagcatag gaatagctgc taaagaaaca aaagcacaaa tagcagaaat caaaggtgct
     9301 atagcaaaaa taaatttttg cgaatttgaa gggattatat cttctttagt aaaaagtttt
     9361 atcatatcag ctacaagttg aataagccca aaaggcccta ccatatcagg ccctatgcgt
     9421 ctttgaaaat aagctaaaac ctttctttca gcataagttg caagacctgc taaactcgca
     9481 aatattgcaa tgataataat acatttaatc aaagtctcta aagcaaaaaa agcaaaatca
     9541 ctcatggttt gctcctaatt tttctaaatt cgccacaaca aatctttcat caaaaaagct
     9601 tagcgtatca agtttttcat caaaatacgg caagaaagct ccatttttta tatccttatc
     9661 cacacgcaca ctaaggctta attctttatc ttttatttta agttttacaa gatctttatc
     9721 ttttaaattt ttctctttag ctaaattttc acttacacct aaaaaaatca cctcattaat
     9781 cgcactagca cgatttgaaa atctaccaaa ttgatagcta ggattagcac tataaagcaa
     9841 aatttcatct tcttttaggc ttaaattttc aaaatttgga gagatgaatt cttttttagc
     9901 aacttgtttg aaacattcta aattaagctc atatcccctt ttacaatcgc ctgcattggt
     9961 ataaaaattg tctaaatgat caaaatcaat cggagaaaaa cctttattta tagggagtct
    10021 cttagtataa tttatagtat attcctcatc aaaacctaaa gcattagcca aatcatttaa
    10081 aaaatatccc ttaaattcta aagcagcatt agttggtacc actcttttat cataatttaa
    10141 aaaagttcct tcttgctgat ttaaactcgc actagctaaa tttgcatgct cttcataaga
    10201 aaaactaaaa tcaccttttt cattgtagcc taaagtcttg ccttcttgtg tattgttatc
    10261 caaatcacaa atcatagcca cacctaaggt attagtatgc gtaggattta aaaagacttt
    10321 aaaaggagta gtattttgga tcaaagcaag taatttagca agttttttcg catttttatg
    10381 aaaataaaaa tcactcccta caacaagagt aaaatttgct tttttaagca ataaatcttc
    10441 taatttatct tcatctatgc ctaaattttt agcaaaaaca gagcgttgta cttctatgat
    10501 tttttttact tttttaggta cgactttttt tacttctttt tgaatttcat tgccttcttc
    10561 atctttttct atgacttgtt ctacaacttc ttcgttgata ctttcttcta tttctttatt
    10621 ttcactaaca aaaaactctg ctaaatgagt tttaatacct tcatcttggc taaatttttg
    10681 aagtaaaaaa tataaaattt gctcttcatc gccattttta tgaatgtgcg ggataaaatt
    10741 tttagaatat tttgctatac ccatatcttc cataggatga aaataaagcc ctgagccttt
    10801 attcatcact aaagcattat tgattttata gctaagcgtt ggagcatcat atcttaaaag
    10861 cattccagct acaaccaaaa aatcactttt tgttatatct tgagtattag cgctataaaa
    10921 ctcaccagaa ttagcgataa attcttgtaa aaattcttta aatttcaaag cttcttcatt
    10981 gatcaaagaa agattaaatt tcttttttaa attttgtaaa atcaaagctt cttcattggt
    11041 aataaaacta ttaaatttaa tgtttttaat ttcatttttc tcaaaaagct ccacaagttc
    11101 tttaaaggct ttttcatctt tatccgcctc attttgcgta tcaaaagcaa accttgcagc
    11161 cttatttaaa ctcgcaaagg caaaatcatt actcacacga taaatttttt ctttttgatt
    11221 gctaatgccg ctttgcttaa tatcataata catcaactca caatcgcttg aatgcggatt
    11281 tgaagcaggg attcttttaa gttcccaaat atttgaagtg tattgaaatt tcgaacctat
    11341 caaagctcct gttggacaca cgcttgtaca ttctccacaa aatgaacaat caagcgtatc
    11401 accatttgca gggcctatca aacttttttg aaatttagtc caaatcgcat aagcatcttt
    11461 tcccatgctc tctttaaagc tattatccac actatctccg ccacgaggaa cagtctttaa
    11521 agcactttcg ccgattttat ccttacaaac tgtaatacaa cgctcacaca ctatgcaaag
    11581 tgcgggatcg taattaatca ttccccaatg tttatgtggt ttatgcgtgt ctttaatcca
    11641 atgtttttga acatttacac gacttttatg agtaaaattt tgcaattcac actcgcctga
    11701 tttatcgcaa actccacatt ctaaaggatg attgatacaa taagcttgca tgatctcatt
    11761 tctttcatcc caaagatttt gtaaatcact ttctacaacc ataccctctt ttgctttagt
    11821 attgcaagaa tatacctttt taccatcagc ttcaaccata cacatacgac aagccaaagt
    11881 aggactacag cccgaaagat agcaaatcgc tgggataaaa atatcatttc ttcttgctat
    11941 atttaagata tattcgcctt cttcaaaggc gcaatctata ccattaatct taactgtcat
    12001 tttgcttcct ttatgcgaat tggagtaaaa tcaaaaccat tattttcata atttaaaaaa
    12061 gctatggtgc cttgtaaatt ttcatctaaa caaagcttag ttttaaaact aaaatcttta
    12121 gctaaaattt caacttcact ttgatctttg cattttgcaa tttgtaaaaa ttgctttgaa
    12181 caatgtaaat ttttatcttg caaatttgct ctaaaaagca ctaacccgtc ataattatcg
    12241 agttctttta gggtgtttaa ttttgccttt ttaaaatcgc attcttcttc atcgctatct
    12301 aaaatcttta atccatattt tacacttaag aaattcaaaa aatatttgat attttcacta
    12361 tctttataag aatggatatt tttatctata attaaatact taacctcttt taaaaaagca
    12421 agcacttcgc ctgcttcttc ctctccaaaa caagattcag cacttaaata tccctcatct
    12481 aaatcgcaaa attgtccttc atcgcttaat ttacaaagca aggccaaaac aaaactcaaa
    12541 cttgcaattt cgcatttgta aaatttagct tttaagtttt tatcttccaa acaagaaata
    12601 ttaatgctat ttacacctat tttttcacat aaatttttgt ttttaaggct tggcatatct
    12661 aaaaaacaaa gagcattatc ataaatcata ccctctcctt ttttataaca atagtccaat
    12721 cgacttgatt aaatttcaaa gaatttaaaa gctcacagcc ttgttctttt acaaaagaaa
    12781 aacttttttc aacaggagaa aaatcgccga tttcaaaaag caccactaaa acctcacctt
    12841 gttttgcttc ttttatgatt tgtgctaaat cttcaaaaag ctctttgctt tttcttaaat
    12901 ctacccttct catcgatcta tctcacctaa aactatattt acattaccca taatggctac
    12961 aacatcagct aaataagtac ctacaagcat ttcttcaaaa aacgcacaat gccaataact
    13021 aggcgttcta gcctttaaac gataaggtct tcctgtacca tcactatgga taaaaaagcc
    13081 aagctcacct tttggacttt cagtaggcac ataaacttcg cctttagggg gttttaaacc
    13141 ttgagtgatt aaaacaaaat gctgcattaa agaataattc tgcgttaaaa tttgttcctt
    13201 tgaagcactt acatactcag gatgcgtagc taaaatttca ggcgaagtat ctttataaag
    13261 catggcacat tgtctaagga ttttcaaact ttcacgaaat tcttgcatat aaactttata
    13321 tcttgcataa gaatcccctt gcgtagcata aggcacacca aattcaactt cattataaag
    13381 caaataaggc tcttctttgc gtatatcgta ttttatgcca cttcctctta acatcacacc
    13441 cgtacaaccc caatttaagg cttgttcttt agtaaccaca cctacatttt cagttcttaa
    13501 acgccaaatt ctattatcat ctaaaagatc ttcataatct tttaaatcat ttagaaattt
    13561 atcgcaaaat gcaagcattt cttctaaata attctcaggt aaatcaagca taaccccgcc
    13621 tattctcata gaagaatgcg taagccttgc accgcaatac ttttctatca aatccaaaac
    13681 atactctcgt tctctaaaac agtataaaaa tacactcatc gcaccaatat caagcgcatg
    13741 agtagcaagc caaagcaaat gcgatgtgat acggtttaat tctaaaagta tcatgcgtat
    13801 cactgcggca cggcgtggaa tctctaaacc acaaagcttt tcaaccgctg cacaataagc
    13861 ataattattc gctgaagcag cgatatagtc cattctatca gtagtaggaa taaattcttg
    13921 ataaatcata ttttcagcca ttttttccat accacgatgc atataaccta tacaaggacg
    13981 cgcttttaca acttgctctc catcgagttc taaaataaga cgcaaatttc catgcgctga
    14041 aggatgttga gggcctaagt tgataatcat ttttgagtct tcttgctcaa aagctatatt
    14101 ttcataataa ggttttaact tgctaggaat ttgcatttta acgccttttc tctaaaattt
    14161 ttgcttcatc acgttttact ttttttacaa aagccacacc ttcatcttct tgatattctt
    14221 gtttaaagga aatttccttc ttttgaccac cttttggcac ttcatggtaa agtcttgcaa
    14281 aatttagcgt atctttatca tcagcaaaac cagaatctct ttgttcttcg cccactactt
    14341 cacgatattc tttgccaaaa attttatcaa tctcatacca tcttgcaaac tcatcgccct
    14401 ttaaaggata agttttcaaa agcggatgtc caaaccaatc atcaggcatt aaaatgcgtt
    14461 ttaaattagg atgatttatg atgaaaattc caaacatatc ataaatttct ctctcactcc
    14521 aatttgcccc tttaaaaaca tgagccacgc tttgcaaacg ctcttttacg cctacaaaag
    14581 tttttattct cactcttaat tttttttcta aatttaaaag ctgataaaac acttcaaaac
    14641 catttttatc tgctataaaa tcaatagcac ttgcttctgt aaaacttaaa taacctaaag
    14701 ttttaagcat ttgcaaggtt ttaacattgt cttctttttt aatttctatt acccaaaaat
    14761 caaactctac aaaggaattt aaaatttcta cttgagtttt taaaacttca aaatcctctt
    14821 taaaaacact ttcattaaca tcagatttta cagtgtgtgg tgcgtgataa aatctatctt
    14881 tgtagtaatt ttgagtttga gcattttttt tatcgctata ctttctcatc atatcaacct
    14941 tttaggtgcg atcttgcgac ttgctttttc tttgcgaatc tttttttgca aaatcatcaa
    15001 agcaaactga aaactttcgg ggcgtggagc acagcctggc acataaatat ctacaggtat
    15061 aattctatcc actccttgaa cagtagaata agtattaaac ataccgcctg tattggcaca
    15121 acttcccata gaaatcaccc atttaggatc aggcatttga tcataaagtc ttcttgtaaa
    15181 ttcagcgtgc tttttacaca aagttcctgc gataatcatc acttcactgt ggcgtggtga
    15241 agctctaaaa atcgttccaa atctatcaaa atcatatctt gaacccccag ccgccatcat
    15301 ctcaatcgca caacaggcaa gtccataaga taaagcccat aaagaattac tcctgcccca
    15361 ttgaactagc ttatccacac tggttaaaac tacgggcaaa ccacttgcat aatttacttg
    15421 atgctctgcc atgcaaacgc tcctttttta taagcatata aaaatccaac tcctaaaagt
    15481 acgataaaaa caaaaacttc taaaaatcca aaccaaccta aatctttaaa aatcaaagcc
    15541 caaggaaata aaaacacaac ttctatatcc aaaagtatga agattaaggc gatgatgaaa
    15601 aattgagagt taatcttgtt agcttgttta acaggaatag gaccacattc ataaattcca
    15661 agtcctaatt ttttgcgatt ttttgcggca aaattattac cgatttttga agctaaaaaa
    15721 accagtccaa aaaaaataac actagcaagt accagcatta aaaaaatacc aaaataagga
    15781 tgcgaagcat ctatatgaga catttattct ccttttttaa agcactttaa tcactccaca
    15841 acaaaaatta aatttacact tttctttatt ttactctaaa ctttctatat tgaaacttat
    15901 attaaaaaat attttttaaa gttttaattt
//
LOCUS       DARBBO010000034        15912 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.034, whole genome shotgun sequence.
ACCESSION   DARBBO010000034 DARBBO010000000
VERSION     DARBBO010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15912
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.034"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..990)
                     /locus_tag="SB854_000853"
     CDS             complement(<1..990)
                     /locus_tag="SB854_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG0956868.1"
                     /translation="MKKIGVVIPIYNVEKYLRECLDSVINQTYTNLEIMLVNDGSTDE
                     NSLNIAKKYTLKDKRITLFDKKNGGLSSARNVGIEYFSGKYKLKNKTQHIKENSLIEF
                     QLDNNNPYNIYKAYKSSQAFNNEKDLTNFTYPSIDYIIFLDSDNYWELNCIEECVIRM
                     KNVDVLWFDHDCTYEDNIKNKHKKTRMEIFNFKEECIITPKEYANRALSVGSRDISFG
                     WNGMIDFNFLKQIKLKFINFIINEDIHFGIILFASANKIYVLSQKLYLCRLRANSISN
                     HDKKITKANVSEYFKDIYETFGENAKEAKNYLKAASRIITALKLIEFFKDQKSE"
     gene            complement(994..2541)
                     /locus_tag="SB854_000854"
     CDS             complement(994..2541)
                     /locus_tag="SB854_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG0956869.1"
                     /translation="MNLKQISVIIIVKNAKQTLLECLNSLKDFDEIILLNNESSDNTL
                     NIANEFKKDFANLHIYHSAFIGFGALKNLALSYAKNDWILSIDADEVLENECIEELKN
                     LELQEDNIIALSRKNLYKGEWIKACGWWPDYVWRIFNKNFTRFNDNLVHESLVLPSNV
                     KKIHLKNGLKHHAFRDISHLINKMQHYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYF
                     LKNGFLYGYKGFIISVCNALGTFFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLTFLPNEVLIADDGSKEDTARLIEEYQKDFPCPLKHIWQEDEGFRLSKSRNKTI
                     KNADSEYIIVIDGDMILEKDFIKEHLEFAQRRLFLQGSRVILNEKESEEILNKDDYRI
                     AFNKKDFKSSKNSFLAKMLYSLSKKDEKIFKKTTLIKGIRGCNMSFFKTDFDKLDGFN
                     ENFIGWGREDSEFVARFLFNKGIFRRLKFKAIAYHIYHEENSKKMLESNHQIYLDTIK
                     NKKISWR"
     gene            complement(2538..3425)
                     /gene="htrB"
                     /locus_tag="SB854_000855"
     CDS             complement(2538..3425)
                     /gene="htrB"
                     /locus_tag="SB854_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HEG0956870.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPECILHFLALIVARITFYLNKK
                     HRKIIGTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENLLIDALALKRPIIFTTAHYGNWEILSLAYAAKYGAITIVGKKLKSEIMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKGRTLGILTDQDCAENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEDGKFCIEFFKAKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNKEIYKDAK"
     gene            complement(3415..4443)
                     /gene="waaC"
                     /locus_tag="SB854_000856"
     CDS             complement(3415..4443)
                     /gene="waaC"
                     /locus_tag="SB854_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HEG0956871.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNVKNLAFKQDIFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQTKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKMMDLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDAGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            4509..5303
                     /locus_tag="SB854_000857"
     CDS             4509..5303
                     /locus_tag="SB854_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEG0956872.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSESEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIANFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYENKLEKIHEYCESDVLNTYMLFLKYELI
                     KANVSEEDYVDFLSYMRDFLRSKKSDCSYTEVFAKACESEISKVRS"
     gene            5362..6348
                     /gene="galE"
                     /locus_tag="SB854_000858"
     CDS             5362..6348
                     /gene="galE"
                     /locus_tag="SB854_000858"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEG0956873.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRSFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYMNNTVNT
                     TNLIETCLQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLQENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            6342..8036
                     /gene="pglK"
                     /locus_tag="SB854_000859"
     CDS             6342..8036
                     /gene="pglK"
                     /locus_tag="SB854_000859"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HEG0956874.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFVSFIETFAISLAMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHVIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQNLRQE
                     EENLGEEKLSFNQELKIYNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIVKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLSQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEILVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            8033..9112
                     /gene="pglH"
                     /locus_tag="SB854_000860"
     CDS             8033..9112
                     /gene="pglH"
                     /locus_tag="SB854_000860"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HEG0956875.1"
                     /translation="MMKISFIIATLNSGGAERVLVTLANALCKEHEVSIIKFHAGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKADVFISFLDTTNIACI
                     AAKIGFKTPLIISEHSNEAYLKPKIWRFLRGVSYPFCDALSVLGSSDKVYYERFVKRV
                     RLLLNPCHFSDEISFDSSFEKENLVLFIGRLDHNKNPVMFLKAIAHLDKNLQENYKFV
                     IAGDGQLRQELEYKVKSLGIKVDFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLVGCDDEIALAKKLELVLNDENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            9105..10034
                     /gene="pglI"
                     /locus_tag="SB854_000861"
     CDS             9105..10034
                     /gene="pglI"
                     /locus_tag="SB854_000861"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HEG0956876.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAYR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            10022..11119
                     /gene="pglJ"
                     /locus_tag="SB854_000862"
     CDS             10022..11119
                     /gene="pglJ"
                     /locus_tag="SB854_000862"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG0956877.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALM
                     ARMFGNKTRLVINECTTPSVMYMKNNFNSLVNKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSISPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            11123..13264
                     /gene="pglB"
                     /locus_tag="SB854_000863"
     CDS             11123..13264
                     /gene="pglB"
                     /locus_tag="SB854_000863"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HEG0956878.1"
                     /translation="MLKKEYLKNPYLVLFAMIVLAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSALTYWLYKVTPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASIANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLMQGFMYFNVNQTIQEVENVDLSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFALSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQIFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            13274..14404
                     /gene="pglA"
                     /locus_tag="SB854_000864"
     CDS             13274..14404
                     /gene="pglA"
                     /locus_tag="SB854_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG0956879.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDFIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINSLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYVESEKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENIIAQRYLKLYDRVIKNV"
     gene            14397..14999
                     /gene="pglC"
                     /locus_tag="SB854_000865"
     CDS             14397..14999
                     /gene="pglC"
                     /locus_tag="SB854_000865"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HEG0956880.1"
                     /translation="MYEKVFKRIFDFILALVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNTISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            14986..15573
                     /gene="pglD"
                     /locus_tag="SB854_000866"
     CDS             14986..15573
                     /gene="pglD"
                     /locus_tag="SB854_000866"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HEG0956881.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFES
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRM"
     gene            15530..>15912
                     /locus_tag="SB854_000867"
     CDS             15530..>15912
                     /locus_tag="SB854_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956882.1"
                     /translation="MKKVFLWEYLQKGCKLHFNNNLVVHYIVNPSPLGWIVINLLTIC
                     LICYIFPLKNSLKHKKLFSLKANVNSKNSRIIKYTGIAAFLGGLIGIWYNFEGFYQLL
                     FFFELENENLKTLWSLQVSVSSVITG"
BASE COUNT         5324 a         1963 c         2691 g         5934 t
ORIGIN      
        1 ttcgcttttt tgatctttaa aaaattctat caattttaaa gcagttataa tcctgcttgc
       61 tgcttttaaa taattttttg cttccttagc gttttccccg aaagtttcat atatatcttt
      121 aaaatactct gacacatttg cttttgtaat cttcttatca tgatttgata tactgtttgc
      181 tcttaaacgg cacaaataca acttttgtga taaaacataa attttattag cactagcaaa
      241 caaaattatt ccaaagtgta tatcttcatt gataataaaa tttataaatt taagtttaat
      301 ttgctttaaa aaattaaaat caatcattcc attccatcca aaagaaatat ctctagatcc
      361 tacacttaat gctcgatttg catattcttt tggagtgatt atacattctt ctttaaaatt
      421 aaaaatttcc atccttgttt ttttgtgctt attttttata ttgtcttcat aggtgcaatc
      481 atggtcaaac cacaatacat ccacattttt cattcttata acacattctt ctatacaatt
      541 taattcccaa taattatcac tatctaagaa tataatataa tctatactag ggtaagtaaa
      601 attggttaaa tctttttcat tattaaaagc ttgagagctt ttatatgctt tatatatatt
      661 ataaggatta ttattatcca attgaaattc tattaaagaa ttttctttta tatgttgagt
      721 tttgtttttt aatttatact ttccactaaa gtattctata cctacgtttc tagctgaact
      781 taaaccccca tttttcttat caaaaagagt tattctttta tcttttaagg tatatttttt
      841 tgcaatatta agtgagtttt catctgtact accatcattt acaagcatga tttctaagtt
      901 ggtataggtt tgattaatta cgctatctaa gcactctctt agatattttt ccacattata
      961 gattggtata actacaccta ttttcttcat gttttatctc caagaaatct ttttattttt
     1021 gatggtatct aaataaattt gatgattgct ttcaagcatt tttttgctat tttcttcgtg
     1081 ataaatatga taagcaatag ctttaaattt taagcgtcta aaaatgcctt tattaaataa
     1141 aaatctagca acaaattcac tatcttctct accccaacca ataaaatttt cattaaaacc
     1201 atcaagttta tcaaaatcag ttttaaaaaa actcatattg caacccctaa tacctttaat
     1261 aagagtggtt tttttaaaga ttttttcatc tttttttgaa agactgtaaa gcattttagc
     1321 taaaaaagaa tttttagaac ttttaaaatc ttttttatta aaagctatgc gataatcatc
     1381 tttgtttaaa atttcttcgc tttctttttc atttaaaatt actcttgaac cttgtaaaaa
     1441 aagtcttctt tgtgcaaatt ctaaatgttc ttttatgaaa tctttttcca aaatcatatc
     1501 accatcaata actattatat attcactatc agcgtttttt atagttttgt tgcgactttt
     1561 actaagccta aacccttcat cttcttgcca aatgtgtttt aaagggcaag gaaaatcttt
     1621 ttgatattct tcaataagcc ttgctgtatc ttctttacta ccatcatctg cgattaaaac
     1681 ttcattgggt aaaaaggtta gatttttaac actatcaagc actaacttaa ggcgttcttt
     1741 ttgattatag gttgttatta ttaaagcaca agtttttggc ttttgctttt gaagttcata
     1801 taatttcata tatttaaaaa aagtccctaa ggcattacaa acgctaatta taaaaccctt
     1861 ataaccatac aaaaagccat tttttaaaaa ataatttcta aaaaaagtcc aaaaagctct
     1921 taaatttgct tttaaaacac cacttttttt gtgtatattt tgttttgccc aaaggcttga
     1981 gtagtgctgc attttattaa ttaagtgaga aatatctcta aaagcatgat gctttaatcc
     2041 atttttaaga tgaatttttt taacattact tggtaaaaca aggctttcgt gtactaaatt
     2101 atcattaaaa cgagtgaaat ttttattaaa aattctccaa acataatcag gccaccaacc
     2161 acatgccttt atccattcgc ctttatagag atttttacga ctaagtgcga tgatattatc
     2221 ttcttgaagt tctaaatttt taagctcttc aatacactca ttttcaagca cttcatcagc
     2281 atcaatgctt aaaatccaat cattttttgc ataacttaaa gcaaggtttt ttaaagctcc
     2341 aaaacctata aaagcactgt ggtaaatgtg caaattagca aaatcttttt taaattcatt
     2401 agctatattt agggtattat cactactttc attgttaagt aaaataattt catcaaaatc
     2461 ttttaaagaa tttaaacatt caagcaaggt ttgttttgca ttttttacga tgataataac
     2521 acttatttgc tttagattca ttttgcatcc ttgtaaattt ccttattata acttgcaaag
     2581 cgtctatgaa aaaaaaagta ttcccaaggt ctttttttaa tcatttcttc gcaactttgt
     2641 gcttgataaa gtgtcagttc ttctaagctt gcattttgag aatcttttgc tttaaaaaac
     2701 tctatgcaaa atttaccatc ttctttatag gcataaacag ggatgatcaa agcattgctt
     2761 ctttgtgcga taaggcttgc tcccatttga taattcactt ctttgttaaa aaattttaat
     2821 cttacgcttt cgttttctgc gcagtcttga tcggttaaaa ttcctaaagt tctccctttt
     2881 tttagagcgc ttagcatttg tcttatgccg ccttttttgt cgataagttc tatgtcaaat
     2941 tgggtgcgac tttggcttaa aatttcatac ataatttcac tttttaactt tttccctact
     3001 atggtaatcg caccatattt agctgcataa gcaaggctta aaatttccca gtttccatag
     3061 tgtgcagttg tgaagataat aggacgcttt aaagctagag cgtctataag taaattttca
     3121 ttgatgaaat ttactttatt gagaattttt tctttggtgg tgttttgatt ttgcaaacaa
     3181 tcaattccaa attgagcaaa attttcataa attttcaaag acaatttatc gcgttctttt
     3241 tgagtgtatt gaggaaaaca gatttgcaaa tttgtaccga tgattttgcg atgttttttg
     3301 ttaagataaa aagtgattct tgctacaatc aaagctaaaa aatgcaagat acactcaggc
     3361 ataaaagtaa caaaaaattt caaaatataa taaagactaa gatatattct atcactattt
     3421 ttcattaagt aagcctttgg caagtttgaa gatatcttct tcttctatac gcgtgataca
     3481 aaaatcactt ttatcgatat gcttggcatt ttggattttt ttacctgcat caatgatttt
     3541 attgatatga gtttgaaaag cattgcggta gcttggtgtt gcaccaaaaa tcgtaataga
     3601 tgctttattt aaagcaaaag ctaaatgtgt tggaccgcta tcatttccta tgataagatc
     3661 catcattttt gtaaaagcca ttagctcttc aagattaaat tttggcgcta attctatatg
     3721 tgtttcatca ataccactaa gatttaaaac ctctttagca aattcgtatt cttttacatt
     3781 tccccaagcg agccaaattt ttgtttgttg aaattcattg attaaaagct tacaaagtat
     3841 agcaagtttg gttttaggat agattttatt ttctacactt gagcccacat gtatgagtat
     3901 gtttttttcg tttttgtcga gtttgagttt attatttaag agttgtttta aattttcatc
     3961 tacgctaaaa atatcttgtt taaaggctaa atttttgaca ttaaaatcag tatttaacat
     4021 aaaggaggta agacttaagt atcttacaaa tacattttca ttgtaatcta actcaagttt
     4081 ttggttgtag aaattatgag caaaactttc tttaagacta tttttatcaa aaccaaaatt
     4141 atttctactt aaaattcgac ttacaatagc agattttatg agcccttgta gatctattac
     4201 tgcattatag ttgttttttc ttgctttaag aagaattttt aggcttttta aaattttttt
     4261 gtcttttaag ggcagggcat agagtttgtc tattaaagga tggtttttaa gtatgccttc
     4321 aaatttttca tctacaaacc aatgaatttc tatatctttt ttaaaatttt tgataaattg
     4381 caaaaccacg gcactttgta taatatcacc aagtgctgac aaacgaacaa ttgctatttt
     4441 cattaaaagc ctaatatttt aaaatttttg ctatgatttt agcgaaatta tttaaaaaaa
     4501 ggttaaaaat ggcaaaaaat gaaggttata tttgtgtttt tgattgtgag agtgtgccag
     4561 atgttgagct tatccgcaaa actttgggtt ttgaaggaag tgatttagag gtaagtttaa
     4621 aagcacttca gtggcaaaaa gaacaaagtg agagtgagtt tttgcctttg ccttatcata
     4681 aaattatcag tatttgtgcg gttttaagtg ataattttgg aaaatttatc aaagtgaata
     4741 aaattgatgg acaaaatgaa aaagaaatga ttgctaattt ttttaatttt atagaaaatt
     4801 atgagccaaa attagtcagt tttaatggta aaaatttcga tatgcctgtt cttgttttaa
     4861 gggctttaaa atacaattta aaagcagcaa cttatttaga tactcaaagt gataaatgga
     4921 ataattataa aacaagattt tcagaattaa aacattgtga tttattagaa tccttaggat
     4981 ctaatgggcg tggaataaag cttgatacac tttgttctat ggtgggtttg ccaggaaaat
     5041 atgatgtgca tggcgatgag gtaatgaaac ttttttatga aaataaactt gaaaaaatcc
     5101 acgaatattg tgaaagtgat gttttaaaca cctatatgct ttttttaaaa tatgaactta
     5161 ttaaagctaa tgttagtgaa gaagattatg ttgattttct ttcttatatg agagattttt
     5221 tgcgttcaaa aaaatcagat tgttcttata cagaagtttt tgcaaaagct tgtgagagtg
     5281 aaatttcaaa agttcgatct taagtattta agaaaatata ttaaaattta tttttgacat
     5341 tttttaaaaa aaggaatgat gatgaaaatt cttattagcg gtggtgcagg ttatataggt
     5401 tctcatactt taagacaatt tttaaaaaca gatcatgaaa tttgtgtttt agataatctt
     5461 tctaagggtt ctaaaattgc aatagaagat ttgcaaaaaa taagatcttt taaatttttt
     5521 gaacaagatt taagtgattt tcaaggcgta aaagcattgt ttgagagaga aaaatttgac
     5581 gctattgtgc attttgcagc gagcattgaa gtttttgaaa gtatgcaaaa ccctttaaaa
     5641 tattatatga acaacactgt taatacgaca aatcttatcg aaacttgttt acaaactgga
     5701 gtaaataaat ttatattttc ttcaacggca gccacttatg gcgaaccaca aactcccgtt
     5761 gtgagcgaaa caagcccttt agcacctatt aatccttatg ggcgtagtaa gcttatgagc
     5821 gaagaggttt tgcgtgatgc aagtatggca aatcctgaat ttaagcattg cattttaaga
     5881 tattttaatg ttgcaggtgc ttgtatggat tatactttag gacaacgcta tccaaaagca
     5941 acattactca taaaagttgc agctgaatgt gccgcaggaa aacgtgataa acttttcata
     6001 tttggcgatg attatgatac aaaagatggt acttgcataa gagattttat ccatgtagat
     6061 gatatttcaa gtgcgcattt agcggctttg gattatttac aagagaatga aagcaatgtt
     6121 tttaatgtag gttatggaca tggttttagc gtaaaagaag tgattgaagc gatgaaaaaa
     6181 gttagcggag tggattttaa agtagaactt gccccacgcc gtgcgggtga tcctagtgta
     6241 ttgatttctg atgcaagtaa aatcagaaat cttacttctt ggcagcctaa atatgatgat
     6301 ttagagctta tttgtaaatc tgcttttgat tgggaaaagc agtgttaaaa aaactttttt
     6361 ttattttaag caaggaagat aaaaattttt tatttttttt gcttgttttt tcagtatttg
     6421 tttcttttat agaaactttt gcgatttctt tggcaatgcc ttttatcact ttggccagtg
     6481 atttttctta ttttgatcgt aataaatatt taatcagctt aaaagaatat cttaatatcc
     6541 ctgtttttga aatcattgtt tattttgggg tggggcttat tgttttttat gtgtttagag
     6601 ctttgttaaa tgcgtattat tttcatcttt tagcaagatt ttctaaaggg cgttatcatg
     6661 tgatcgctta taaggttttt tctaaatttt taaatattaa ttatgaaaaa tttactcaaa
     6721 aaaatcaatc tgaaatttta aagtccatta caggggaagt ttataatcta agcactatga
     6781 tttcatcatt tttacttttg atgagtgaaa tttttgtagt gcttttgctt tatgctttaa
     6841 tgcttttgat taattataaa atcactttat ttttaagtat ttttatggtg ttaaatgcct
     6901 ttattttagt gaaaatttta agccctatca ttaaaaaagc aggagtaaga cgcgaagaag
     6961 cgatgaaaaa tttctttgaa attttaaata caaatttaaa taatttcaaa tttattaagc
     7021 ttaaaaccaa agaagatgga gtattaagtc tttttaaagc gcaaagtgaa gctttttcta
     7081 aagcaaatat taccaacgaa agcgtagctg cggtgcctag aatttatctt gaaggaatag
     7141 gtttttgtgt acttgttttt atcgtggtat ttttggtgtt gaaaaatgaa agtgatattt
     7201 caggtatttt atccacgatt tctatttttg ttttagcact ttatcgctta atgccaagtg
     7261 caaatcgtat tattacaagt tatcatgatt tgctttatta tcattcttct ttggatatta
     7321 tttatcaaaa tttaagacaa gaagaagaaa atttgggcga ggaaaaatta agctttaatc
     7381 aagagcttaa aatttacaac cttagctttg gttatgaggg aaaaaaatat ttatttaaaa
     7441 atcttaactt aaacattaaa aaaggcgaaa aaatcgcttt tataggggag agtggttgcg
     7501 gaaaaagtac cttagtagat cttatcatag gacttttaaa accaaaagaa gggcaaattt
     7561 taattgatga gcaagaatta aatgcaaata atacaaaaaa ttatcgccaa aaaataggct
     7621 atatcccgca aaatatctat ctttttaatg acagtatagt taaaaatatc acttttggag
     7681 atgcggttga tgaagaaaaa cttaataggg ttatcaaaca agcaaattta gagcatttta
     7741 taaaaaattt atctcaagga gtgcaaacaa aagtgggtga tggggggagt aatttaagcg
     7801 ggggacaaaa acaacgcata gctatagcaa gagctttata tttagagcct gaaattttag
     7861 tgcttgatga agcaacttct gcgcttgata ctcaaagtga agcaaaaatc atggatgaaa
     7921 tttataaaat ttctaaagat aaaaccatga ttattatcgc acatcgcctt tctacgataa
     7981 cgcaatgtga taaggtttat cgtttagaac acggtaagct taaagaggag aaatgatgaa
     8041 aataagcttt attatcgcaa ctttaaattc aggaggcgct gagcgtgttt tagtaacctt
     8101 agctaatgca ctttgcaaag agcatgaagt aagtattatt aaatttcatg caggagaatc
     8161 tttttataag cttgaaaatg aagttaaagt tacaagttta gaacaattta gatttgatac
     8221 gctttatcat aaaatcgcaa gtcgttttaa gaaatttttt gctttaagaa aggctttgaa
     8281 agaaagtaag gctgatgttt ttatttcttt tttggatacg actaatattg cttgtattgc
     8341 tgcgaaaata gggtttaaaa ctccactcat tataagtgag catagcaatg aagcgtattt
     8401 aaaacctaaa atttggcgtt ttttaagagg ggtaagctat cctttttgtg atgctttaag
     8461 tgtgcttgga agcagtgata aggtgtatta tgaaagattt gtaaaaaggg ttaggctttt
     8521 attaaatcct tgtcatttta gtgatgaaat ttcttttgat tctagttttg aaaaggaaaa
     8581 tttggttctt tttatagggc gtttagatca caacaaaaac cctgtaatgt ttttaaaagc
     8641 tatagcgcat ttggataaaa atttacaaga aaattataaa tttgttatag caggagatgg
     8701 acagttaaga caagaacttg aatataaggt aaaatcttta ggaataaaag ttgatttttt
     8761 aggacgcgtt gaaaatgtca aggctcttta tgaaaaagca aaagtgcttt gcctttgttc
     8821 ttttgtagag ggtttgccaa cggttttaat tgaaagtttg tattttgagg tttgtagaat
     8881 ttcaagttct tattataatg gtgctaagga tttaatcaaa gataatcatg atgggctttt
     8941 ggtaggttgt gatgatgaaa tagcacttgc taaaaaactt gaacttgttt taaatgatga
     9001 aaattttaga aaagaacttg taaataatgc caaacaaagg tgtaaagact ttgaaatttc
     9061 tcatatcaaa gaagaatggc ttaagcttat agccgaggtt aaaaatgcct aaactttctg
     9121 ttatagtacc aacttttaat cgtcaagttt tgttagaaaa ggctattaaa agcatacaaa
     9181 atcaagattt taaagattta gaaattattg taagcgatga taattctagc gatgatacta
     9241 aaagtgtggt gcaaaattta caaaaagatg atgatcgcat taagtatttt ttaaatcaaa
     9301 attacaaaca aggtccaaat ggcaataaaa acaatggctt agatcaagca agtggcgagt
     9361 ttgtaacttt tttagatgat gatgatgagc ttttatccgg ggctttaagt accttgatgc
     9421 aaaaagcaaa tgagggttat gctcatgttt ttggaaattg tttgatagaa aaagaaggaa
     9481 atttaagcaa ggaatttagc ggcaagggct tggaaaaaga tagtgaaatt tctaaaaaag
     9541 attttttaat ggctaaattt agcggagagt ttttttctgt ttttaaaaaa tccctacttg
     9601 aaaataagcg ttttaatgaa gaattttatg gcaatgaagc cacgctttgg gtaaatttat
     9661 acaaagaaaa aagtttttat atccataagg cttttaggat ttatagaatt tttaggcaag
     9721 atagcgtgac tttaggggcg agtaaaaatg cttatagggt gtatttggga tatttagagc
     9781 ttgctaaaat tttagaaaat gaacttagaa tgagtaagga taaagattat aaaaaaactt
     9841 gtgcgagtta ttataaaatg gcagcttatt atgcaaaact tgcaaaaaat tataaagccc
     9901 tttataaatg tttgtttaaa agcctaagta taaaaatcaa cgctcctgct ttgatattac
     9961 tcattttaag tataattcca aataatatga ttgaaaaatt atcaaaaatt cgggtggctt
    10021 tatgcaaaaa ttaggcattt ttatttattc tttaggaagt ggtggtgctg aaagagttgt
    10081 ggcgacttta ttgcctattt taagtttgaa atttgaagtg catttgatct tgatgaatga
    10141 taaaatttct tatgaaattc cagagtgtca aattcatttt ttagaatgtt caaaacctag
    10201 tgaaaatcct attttgaaat ttttaaaact accttttttg gctttaaaat acaaaaaact
    10261 ttgcagaaat ttaggtattg atacagaatt tgttttttta aatcgaccta attatatagc
    10321 tttaatggca agaatgtttg gaaacaaaac tcgccttgtg atcaatgaat gcactacgcc
    10381 aagtgtgatg tatatgaaaa ataattttaa ttctttggta aataaatttt taatttcttt
    10441 gctttaccca aaagctgatt taatcttgcc taattctaag ggaaatttag aagatttagt
    10501 gcaaaatttt agtataagtc caaaaaaatg tgaaatttta tacaatgcca tcgatttaga
    10561 aaacataggg caaaaagccc ttgaagacat agctttaaaa gataaattta ttttaagtgt
    10621 aggcaggctt gataaaggta aaaatcatgc tttattaatt cgtgcttatg cgagattgaa
    10681 aacagattta aagcttgtga ttttaggtga aggtgtgctt aaggatgagc ttttagcttt
    10741 gattaaagaa ttaaatttgg aagaaaaggt tttgctttta ggatttgata ataatcctta
    10801 taaatacatg gctaaatgcg aattttttgc ttttgcttct gtgtttgaag gtttttcaaa
    10861 tgttttaatc gaaagtttgg cttgttcttg tgcagtggtt tgcactgatc ataaaagtgg
    10921 tgcaagagag ctttttggcg atgatgaatt tggactttta gtagaagtag ataatgaaaa
    10981 ctctatgttt cagggtttaa aaactatgct tgaagacgat aaattaagaa aagcgtataa
    11041 aaacaaagct aaaactaggg ctaaagcctt tgataaagta aaaattgcac gcgatgcttt
    11101 gaaatattta ttaggataaa agatgttgaa aaaagagtat ttaaaaaacc cttatttagt
    11161 tttgtttgcg atgattgtat tagcttatgt ttttagtgta ttttgcaggt tttattgggt
    11221 ttggtgggca agtgagttta acgagtattt tttcaataat caattaatga tcatttcaaa
    11281 cgatggctat gcttttgctg agggcgcaag agatatgata gcaggttttc atcagcctaa
    11341 tgatttgagt tactatggat cttctttatc cgcgcttact tattggcttt ataaagtcac
    11401 acctttttct tttgaaagta tcattttata tatgagtact tttttatctt ctttggtggt
    11461 gattcctatt attttactag ctaatgaata caaacgtcct ttaatgggct ttgtagctgc
    11521 tcttttagca agtatagcaa acagttatta taatcgcact atgagtgggt attatgatac
    11581 ggatatgctg gtaattgttt tacctatgtt tattttattt tttatggtaa gaatgatttt
    11641 aaaaaaagac tttttttcat tgattgcctt gccgttattt ataggaattt atctttggtg
    11701 gtatccttca agttatactt taaatgtagc tttaattgga ctttttttaa tttatacact
    11761 tatttttcat agaaaagaaa agatttttta tatagctgtg attttgtctt ctcttactct
    11821 ttcaaatata gcatggtttt atcaaagtgc cattatagta atactttttg ctttattcgc
    11881 cttagagcaa aaacgcttaa attttatgat tataggaatt ttaggtagtg caactttgat
    11941 atttttgatt ttaagtggtg gggttgatcc catactttat cagcttaaat tttatatttt
    12001 tagaagtgat gaaagtgcga atttaatgca gggctttatg tattttaatg tcaatcaaac
    12061 catacaagaa gttgaaaatg tagatcttag cgaatttatg cgaagaatta gtggtagtga
    12121 aattgttttt ttgttttctt tgtttggttt tgtatggctt ttgagaaaac ataaaagtat
    12181 gattatggct ttacctatat tggtgcttgg gtttttagcc ttaaaagggg ggcttagatt
    12241 taccatttat tctgtacctg taatggcctt aggatttggt tttttattga gcgagtttaa
    12301 ggctatattg gttaaaaaat atagccaatt aacttcaaat gtttgtattg tttttgcaac
    12361 tattttgact ttagctccag tatttatcca tatttacaac tataaagcac caacagtttt
    12421 ttctcaaaat gaagcatcat tattaaatca attaaaaaat atagctaata gagaagatta
    12481 tgtggtaact tggtgggatt atggttatcc tgtgcgttat tatagcgatg tgaaaacttt
    12541 agtagatggt ggaaagcatt taggtaagga taattttttc ccttcttttg ctttaagcaa
    12601 agatgaacaa gctgcggcta atatggcaag acttagtgta gaatatacag aaaaaagctt
    12661 ttatgctccg caaaatgata ttttaaaatc agacatttta caagccatga tgaaagatta
    12721 taatcaaagc aatgtggatt tgtttctagc ttcattatca aaacctgatt ttaaaatcga
    12781 tacgccaaaa actcgtgata tttatcttta tatgcccgct agaatgtctt tgattttttc
    12841 tacggtggct agtttttctt ttattaattt agatacagga gttttggata aaccttttac
    12901 ctttagcaca gcttatccac ttgatgttaa aaatggagaa atttatctta gcaacggagt
    12961 ggttttaagc gatgatttta gaagttttaa aataggtgat aatgtggttt ctgtaaatag
    13021 tatcgtagag attaattcta ttaaacaagg tgaatacaaa atcactccaa tcgatgataa
    13081 ggctcagttt tatatttttt atttaaagga tagtgctatt ccttacgcac aatttatttt
    13141 aatggataaa accatgttta atagtgctta tgtgcaaata ttttttttgg gaaattatga
    13201 taagaattta tttgacttgg tgattaattc tagagatgct aaagttttta aacttaaaat
    13261 ttaagggttg aaaatgagaa taggattttt atcacatgca ggagcgagta tttatcattt
    13321 tagaatgcct attataaaag cgttaaaaga tagaaaagac gaagtttttg ttatagtgcc
    13381 gcaagatgaa tacacgcaaa aacttagaga tcttggctta aaagtaattg tttatgagtt
    13441 ttcaagagct agtttaaatc cttttgtggt tttaaagaat tttttttatc ttgctaaggt
    13501 tttgaaaaat ttaaatcttg attttattca aagtgcggca cacaaaagca atacttttgg
    13561 aattttagca gcaaaatggg caaaaattcc ttatcgtttt gccttagtag aaggcttggg
    13621 atctttttat atagatcaag gttttaaggc aaatttagtg cgttttgtta ttaatagtct
    13681 ttataaatta agttttaaat ttgcacacca atttattttt gtcaatgaaa gtaatgctga
    13741 gttcatgcgg aatttaggac ttaaagaaaa taaaatttgc gtgataaaat ctgtagggat
    13801 caatttaaaa aaattttttc ctatttatgt agaatcggaa aaaaaagagc ttttttggaa
    13861 aaatttaaac atagataaaa aacccattgt gcttatgata gcaagagctt tatggcataa
    13921 gggtgtaaaa gaattttatg aaagtgctac tatgctaaaa gacaaagcaa attttgtttt
    13981 agttggtgga agagatgaaa atccttcttg tgcaagtttg gagtttttaa actctggcgc
    14041 ggtgcattat ttgggtgcta gaagtgatat agtcgagctt ttgcaaaatt gtgatatttt
    14101 tgttttgcca agctataaag aaggctttcc tgtaagtgtt ttggaggcaa aagcttgcgg
    14161 taaggctata gtggtgagtg attgtgaagg ttgtgtggag gctatttcta atgcttatga
    14221 tggactttgg gcaaaaacaa aaaatgctaa agatttaagc gaaaaaattt cacttttatt
    14281 agaagatgaa aaattaagat taaatttagc taaaaatgcc gcccaagatg ctttacaata
    14341 cgatgaaaat ataatcgcac agcgttattt aaaactttat gatagggtaa ttaagaatgt
    14401 atgaaaaagt ttttaaaaga atttttgatt ttattttagc tttagtgctt ttagtgcttt
    14461 tttctccggt gattttaatc actgctttac ttttaaaaat cactcaagga agtgtgattt
    14521 ttacccaaaa tcgtcccggg ttagatgaaa aaatttttaa aatttataaa tttaaaacca
    14581 tgagcgatga aagagatgaa aagggtgagt tattaagcga tgaattgcgt ttgaaagctt
    14641 ttggaaaaat cgttagaagc ttaagtttgg atgagctttt gcaacttttt aatgttttaa
    14701 aaggggatat gagttttgtt ggacctagac ctcttttggt tgagtatttg cctctttaca
    14761 ataaagagca aaaattgcgt cataaagtgc gtccaggtat aacaggatgg gcgcaggtaa
    14821 atggtagaaa tactatttct tggcagaaaa aattcgaact tgatgtgtat tatgtgaaaa
    14881 atatttcttt tttgcttgat ttaaaaatca tgtttttaac agctttaaag gttttaaaac
    14941 gaagtggggt aagcaaagaa ggccatgtta caacagagaa atttaatggc aagaactgaa
    15001 aaaatttata tttatggtgc tagtggtcat gggcttgttt gtgaagatgt ggctaaaaat
    15061 atgggttata aagaatgtat ttttttagat gattttaaag gaatgaaatt tgaaagtacc
    15121 ttacctaaat atgatttttt tatagccata ggaaacaatg aaattcgaaa aaagatttat
    15181 caaaaaattt cagaaaatgg ctttaaaatt gtcaatctta tccataaaag tgcacttata
    15241 agtcctagcg caatcgtgga agaaaatgca ggaattttaa tcatgcctta tgtagtgatt
    15301 aacgctaaag ctaaaataga aaaaggtgtg attttaaata cttcaagcgt aattgagcat
    15361 gaatgtgtga taggggaatt ttctcatgtg agtgtgggag ctaaatgtgc gggtaatgta
    15421 aaaattggta aaaattgttt tttagggatt aattcttgtg ttttgcctaa tttaagtttg
    15481 gcagatgata gtattttagg tggtggagca actttagtta aaaatcaaga tgaaaaaggt
    15541 gtttttgtgg gagtacctgc aaaaaggatg taaattgcat tttaataaca atcttgttgt
    15601 tcactatata gtaaatcctt cgcctttggg gtggattgtc attaatttac taaccatatg
    15661 tctaatatgc tacatatttc ctttgaaaaa ttctttaaaa cacaaaaaac tttttagtct
    15721 taaagcaaat gtaaattcta aaaatagtag gattataaaa tatacaggta ttgctgcttt
    15781 tttgggtgga ttaataggaa tttggtataa ttttgaaggt ttttatcaac ttcttttttt
    15841 ctttgaatta gaaaatgaaa atttaaaaac actttggagt ttgcaagtat cagtttcttc
    15901 tgtgataaca gg
//
LOCUS       DARBBO010000035        15470 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.035, whole genome shotgun sequence.
ACCESSION   DARBBO010000035 DARBBO010000000
VERSION     DARBBO010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15470
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.035"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..493)
                     /gene="yaaA"
                     /locus_tag="SB854_000868"
     CDS             complement(<1..493)
                     /gene="yaaA"
                     /locus_tag="SB854_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEG0956883.1"
                     /translation="MKILFSSSESKNENCTKNPINENSFIFKELFPYRMETLKHYEEF
                     IKNASLQNLQELFGIKNENEIDKFKHDLKQAPTQEAILLYTGVSYEYLNFKILDKKSQ
                     AYILENTLIFSNLFGVVRASDTLPFYKFKQGAKIGNFAIEKFYKEHFSKALDEYLENE
                     EILD"
     gene            complement(584..1702)
                     /locus_tag="SB854_000869"
     CDS             complement(584..1702)
                     /locus_tag="SB854_000869"
                     /inference="COORDINATES: protein motif:HMM:NF027978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JlpA-like lipoprotein"
                     /protein_id="HEG0956884.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLAKDNNDEYQELFQAKNIKIRSNEIY
                     KGEANTSISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKIRSFI
                     NKLSSDSYTLSFDNSINKQENNYLDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLAMDEQAINELLNKANYKQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     IATAKENLQTLKAQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYNA
                     QGIDSIEKLSINNQDATEALKIILPFIMFSMLMGGASF"
     gene            1922..2761
                     /locus_tag="SB854_000870"
     CDS             1922..2761
                     /locus_tag="SB854_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG0956885.1"
                     /translation="MKKILLSVLTTFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDVALAKRIAKELFGDESKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPQRAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            2802..4049
                     /locus_tag="SB854_000871"
     CDS             2802..4049
                     /locus_tag="SB854_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0956886.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVIAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     SFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYKICSIFSIAFIIFGMLFGFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGSCS
                     LLCVFLLKRVFARSKIKELSIVF"
     gene            complement(4032..5300)
                     /locus_tag="SB854_000872"
     CDS             complement(4032..5300)
                     /locus_tag="SB854_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEG0956887.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLSFNTLRKKGKIYELCTQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGG
                     ERINSIPKHAKALVHFKDEVKSNNWIKCEFKEENEFEICDQSKKLLSLINSFTHGVRA
                     YDENLDIVQTSINLATLRMQDNQIKFALFARSNILDGLKQVEFETLEFFKAFDFKIRS
                     FNFYPPWEGKPNALSDMVFKALKKVSPNAKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
     gene            5368..5895
                     /locus_tag="SB854_000873"
     CDS             5368..5895
                     /locus_tag="SB854_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEG0956888.1"
                     /translation="MRINYKKLFNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSF
                     EGKVVRIIDGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEII
                     YKNKDTYGRIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYTKEQENAKKNHLGLWKE
                     SNPIEPYKWRKHNKF"
     gene            5904..6077
                     /locus_tag="SB854_000874"
     CDS             5904..6077
                     /locus_tag="SB854_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956889.1"
                     /translation="MKKYTLMVLLALGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(6078..6656)
                     /locus_tag="SB854_000875"
     CDS             complement(6078..6656)
                     /locus_tag="SB854_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956890.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEVKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGAKINNPEAVAAALMASVGGK"
     gene            complement(6729..7619)
                     /gene="cmoB"
                     /locus_tag="SB854_000876"
     CDS             complement(6729..7619)
                     /gene="cmoB"
                     /locus_tag="SB854_000876"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HEG0956891.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYAKIQELKALNLACNFSLGDSVNL
                     STNSQAKDEILAIAKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     GLKFDVIFCLGVIYHRSDPIKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRIYIRIKI"
     gene            complement(7715..9461)
                     /locus_tag="SB854_000877"
                     /pseudo
     CDS             complement(7715..9461)
                     /locus_tag="SB854_000877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
     gene            complement(10205..10749)
                     /locus_tag="SB854_000878"
                     /pseudo
     CDS             complement(10205..10749)
                     /locus_tag="SB854_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002885186.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(11966..12418)
                     /locus_tag="SB854_000879"
                     /pseudo
     CDS             complement(11966..12418)
                     /locus_tag="SB854_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853533.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
     gene            complement(12884..14862)
                     /locus_tag="SB854_000880"
                     /pseudo
     CDS             complement(12884..14862)
                     /locus_tag="SB854_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853402.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            15290..>15470
                     /locus_tag="SB854_000881"
     CDS             15290..>15470
                     /locus_tag="SB854_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG0956892.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERARSEIFFNKKVDIFDAS
                     KGHFLLAKANCNFLKP"
BASE COUNT         4869 a         2260 c         2300 g         6041 t
ORIGIN      
        1 gatcaagtat ttcttcattt tctaagtatt catctaaggc tttactaaaa tgttctttat
       61 aaaatttctc tatggcaaaa tttcctattt tagccccttg cttgaattta taaaagggta
      121 gggtatcact agctcttaca acgccaaaaa gattagaaaa tataagagta ttttctaaaa
      181 tataagcttg acttttttta tctaggattt taaaattaag atattcataa cttaccccag
      241 tataaagcaa tatagcttct tgagtgggag cttgttttaa gtcgtgttta aatttatcaa
      301 tttcattttc atttttaatg ccaaaaagtt cttgtaaatt ctgtaaactt gcgtttttga
      361 taaattcttc ataatgcttt aaagtttcca ttctataagg aaataattct ttaaatataa
      421 atgagttttc attgatagga ttttttgtac aattttcatt tttgctttca ctagaggaga
      481 ataaaatttt cattttagcc ttttttgtta atgttatgaa acattaagag caaagaattt
      541 aatcttgctt ttaatgtttt tgaagttttt atcattttaa aatttaaaac gacgctccgc
      601 ccattaacat agaaaacatg ataaatggaa gtataatttt taacgcttct gtggcgtctt
      661 gattgttgat gcttagtttt tcgatgctgt cgattccctg tgcgttatag tcactaacag
      721 ggatgttttt aaattttaaa tcaagattga gtttataatc atcgttttga gtgatattgt
      781 ttaaaatagc taaagcttta tcaaagatta atgcttgttc ttcattttga ctttgagctt
      841 ttaaggtttg taaattttcc ttagcagttg ctatatagct actaaatacg ccttcggttt
      901 taagagttga atcaatttta aaattattta agatgatgta tttttggatt gtattgctaa
      961 aatctgaagc ttgtttgtag tttgctttat taagaagttc attgatagct tgttcatcca
     1021 tagctaaagt ttgagtgtta aattttatac ccttagaatc aaggtaatta agcaaatctt
     1081 cttttagatt tatatttaaa tttgtattga aatttaattt tgcgttataa aattttatat
     1141 caagattatc tagataattg ttttcttgtt tgtttataga gttatcaaat gataaagtat
     1201 aagaatccga gcttaattta ttgataaaag atctgatttt tggatcttgt tgaaataagc
     1261 ttgcattgat gtcactaaca actttttctc caagtttaaa atcttcaaaa accaaatttg
     1321 attgtatgct tttttggttt ttaaaaagat cgttgtaata ttctttaatg ctaattgatg
     1381 tatttgcttc gcctttgtaa atttcatttg aacgaatttt gatatttttt gcttgaaata
     1441 gttcttgata ctcatcgtta ttatcttttg caagagtttt gaaatttgga cttaaacacg
     1501 ctataaaatc accatctgca ttgcatttaa aatcagaaaa ttcaatcttt attccagagt
     1561 cctgagaaag gcttgcaatt tcttgtttaa ctgtttgatt tagttgattt tcatattttt
     1621 taactgtttt ttcatctatg gaatttccgc aagctgaaaa caaaacagct attccaatag
     1681 agagaaaaat accttttttc atagttttct ccttaaaaat ttaaaaaaaa gattatatct
     1741 ttttttactt aaaatttaaa caatactaaa agagagagtg tgattaatta catttttaca
     1801 cataggaaaa tctttttagt ttgtttcaaa tgcattattt ataattttaa gtataattaa
     1861 ctttgcaatt attatatatt tttgcaacag ctttaagctt atttttaaag aaaggaaatg
     1921 tatgaaaaaa atacttctaa gtgttttaac gacctttgtt gcagtagtat tggctgcttg
     1981 tggaggaaat tctgactcta aaactttaaa ttctcttgat aagatcaagc aaaatggagt
     2041 tgttaggatt ggggtatttg gcgataaacc accttttggt tatgtagatg aaaaaggaaa
     2101 caatcaaggc tatgatgtag ctttagctaa acgcatagca aaagaacttt ttggagatga
     2161 aagcaaggta caatttgttc ttgttgaagc tgcaaatagg gttgagtttt taaaatcaaa
     2221 taaagtagat attattttgg ctaattttac tcaaactccg caaagagccg agcaggttga
     2281 tttttgcttg ccttatatga aggtagcttt aggtgtagct gtaccaaagg atagtaatat
     2341 aactagcgta gaagatttaa aagataaaac tttactttta aacaaaggca caacagcgga
     2401 tgcttacttt acgcaaaatt atcctaatat taaaacttta aaatacgatc aaaatactga
     2461 aacttttgcc gctttgatgg ataaaagagg tgatgcttta agtcatgata ataccttgct
     2521 ttttgcttgg gtaaaagatc atcctgattt taaaatgggt atcaaagagt taggcaataa
     2581 agatgttatc gcaccagcag ttaaaaaagg cgataaagaa cttaaagaat ttatcgataa
     2641 tttgatcatc aaactaggtc aagagcagtt ttttcacaag gcttatgatg aaactttaaa
     2701 agctcatttt ggagatgatg ttaaggctga tgatgtagtg attgaaggtg gaaaaattta
     2761 ataaagggct ttttgccctt tatattgatt taggataaaa tatgcaaaaa aaatacaaaa
     2821 atattattta tgcttctttg ggtggaattt tagaatttta tgattttgtg ctttttgcct
     2881 tttttttgga tatttttgct aaggtattct ttccgcaaaa tgatgctttt tggatgcaga
     2941 taaatgctta tatagccttt ggtgctgctt atttagcgcg tccttttggt tctattgtga
     3001 tagcacattt tgctgataga tatggaagaa agaatatttt ttatatttct atgcttttga
     3061 tggttttgcc tagttttgct ttagcttttt taccaagtta tgaaagtata ggtatatttg
     3121 ctactttgat tttatttact attcgtattt tgcaaggttt agccgttgga actgaggtga
     3181 gcggagcttg gatttatgtg agcgaatttg ttaaagggcg tcaaattcct ttggctcttg
     3241 gttttatttc agcgacttta accataggtt tattgctagg aaatattgcc actttaggca
     3301 taagatctta ttttacccca gaagaagttc aaagctatgc ttggagaatt ccttttatca
     3361 taggaggatt ttttggaatt ttagctttgt ttttaagaaa taaactcagc gaaactccag
     3421 aatttataaa agttcaaaat gaaaagaaaa ttttaagttt tccattgttt gaagctttga
     3481 aaactcataa aatgagtatg cttgtttgtt ttttaatgac catggtttta acaagcggtg
     3541 tggcaacttt gatgattttg cctaagtatt ttgaaagtct tttagctatg agtaaaactt
     3601 ctgctttatg ggtgcaaaat tttgctattt tagcggtgat ttttggagct ttatttcaag
     3661 gttttttagc aagcaaatgg ggaagctata aaatttgctc tatttttagt atagctttta
     3721 ttatctttgg tatgcttttt ggtttttatg atgagaattt tttattttat tttttactgg
     3781 cttgttttgc acaaggtatt attactttcg cgcctgtttt tatgacgcaa atttttaaaa
     3841 gcgaacttaa atttagcggg cttagttttg cttataatat ttcttatgcg attttaggtt
     3901 ttttaacccc ttttatagtt aatgcttttt ataaagagta tttaggtatt tatcttgcta
     3961 tagtgggatc ttgctccttg ctttgcgtgt ttttgttaaa acgcgttttt gcaagaagta
     4021 agattaaaga attaagcatt gtcttttaaa acttcaaaaa caaccttaga tattttttca
     4081 actgaagcaa tttcacaatg ctcatcagtt gaatgaggat tatggatatt tgggcctata
     4141 gaagcgcata aaagctcttg ttttttctct ataatgccac actcaagccc tgcatggata
     4201 gctgaaactt tggcattagg cgatactttt ttaagtgctt taaaaaccat gtcgctaagt
     4261 gcgtttggtt taccttccca aggtggatag aaattaaaac ttcttatttt aaaatcaaaa
     4321 gctttgaaaa attctaaagt ttcaaattct acttgcttaa gtccatcaag tatattagat
     4381 cttgcaaaaa gtgcgaattt gatttggtta tcttgcattc ttaaagtagc taggttaatg
     4441 cttgtttgaa ctatatctag attttcatca taagctctaa ctccatgagt gaaagaattt
     4501 ataaggctta aaagtttttt actttgatcg caaatttcaa attcattttc ttctttaaat
     4561 tcgcatttta tccagttatt actctttact tcatctttaa aatgcactaa agctttggcg
     4621 tgtttaggta tagaattgat tctttctccg ccttcaaaag aaatgatttc tccttcattt
     4681 tcttgtatga atttagccat ttctttgatg gaactttttt cattgcgtat gatatttatg
     4741 cctgagtgtc cacctttaaa attttgcgta caaagctcat aaattttacc cttttttcta
     4801 agggtattaa aagataaact tgcttctata tctactccac ctgcacagcc tatcatgatc
     4861 tcatcatcgc tttcatgatc taaatttaaa agcattttag attctaaagt gtgctcgagt
     4921 gaattcactc ccatgagtcc tacttcttca tcgtttgtaa aaagacattc taaattttca
     4981 aattcagcca tagcactcat catgatggct atacctatgc cattatctgc accaagactt
     5041 gaatttttgg ctcttaaaaa gccattttct tcataaactt ctaagtttgg tgcatcgccc
     5101 atacagacca tatcataatg gctttgtaga caaatttttg gtttgccttt tatggcatgg
     5161 atatttcctg ccttatctac actcacctta aagcctttat ctttggcgta agagcttaaa
     5221 aattctttca tttgttctgt ttcataactg caatgaggaa ttttgcataa ttgtttaaaa
     5281 ttttctataa cattttgcat tttatctcct ttgttttgat aaaattatgg catatttttt
     5341 aaaatttaaa ggcaaaatga ttaaaaaatg agaataaatt ataaaaaatt atttaatcta
     5401 agaaaattat taagtgatcc aaaaaaactt ttttctgtat taatcttcac tcttgtagtt
     5461 gtttttatcc agaactatat tgcccaaaat tctagttttg aaggaaaagt agttagaatt
     5521 attgatggag atactataga agttaatcat gaaaacaaac tcgctagaat aagatttttt
     5581 ggtatagatg caccagaact taaacaaagt tttggaaagc aatcaaaaga agctttaagt
     5641 agaattttaa gcggcaaaca agttgaaatt atttataaaa ataaagatac ttatggtaga
     5701 attgttgcta ttgtaaagct taatgatgtt gatattaatc gatttttggt aagcaaaggc
     5761 tatgcttggg ctgatactta ctatagtaac gcttatacca aagaacaaga aaatgctaag
     5821 aaaaatcatt taggtctttg gaaagagagt aatcctatag agccttataa atggagaaaa
     5881 cacaataaat tctaaggaaa aacatgaaaa aatatacttt aatggtgcta ttagctttag
     5941 gaatttctgg atgttttgta aatgaaagag ggatttcaaa tcgtttttat gatgattgta
     6001 aagagtatta tgatggaagc ggaacttatc ataaggattg cccaaaaaat tgggtagata
     6061 ttaaaatgac tccttgatta ttttccaccc acagaggcca ttaatgcagc tgctacggct
     6121 tctggattgt tgattttggc accttgttct tgattttctg taggtttaac agtgttaagt
     6181 ggcggacgct tgagtttaaa tatatgctca tcggtgctaa caacttgtat cgttccttca
     6241 aacattttaa cttctttaac atgtccaacc acttttacat ctcttttttt ggaggtttcg
     6301 tcaaaaagtg catgagcttc aagttctaaa acatcgccta atttaagcgg agcataaaaa
     6361 aaacattttg atccaataat cactgaaaat tctttattga tagaggcttg tgctacatag
     6421 tttgctgcag cgaaaataaa ggcatcaaaa atcaatcctt gatcatctgc taccatttcg
     6481 cttgtggtta tcaaaattga tttggcatag tttttatcaa tttcgataat ggttccagca
     6541 agtgaggtgt ttaattcagg acaagtgagt aattctgctc taacgcgaga tatatcttct
     6601 gcagatgcgt attcttcaag ttgtgcatat tcttcaaaat tatctttttt tgccatatct
     6661 aacctttaaa ttctacttat ctacttcaaa atatctaaaa ttcaatatcg gcaaaaaata
     6721 aaaagaattt atattttaat gcgtatataa attcttttgg gtgcttcata gccttcaatg
     6781 gtaagatttt tatcctttgg atctaagaaa ttttccagcg aaaaagagtc tatccattct
     6841 gtttttcttt gttcgttttc atcggttttt tttgtagcca aaacttcaaa ttctttaaat
     6901 cctgctcttt cacaccagtt ttttaatgca ctaatgcttg gtacaaaata aatatttgga
     6961 attttagaat aagttttatt aggcacaaga gcgatttctc tctcatcttc tatatacatg
     7021 gtatctaaaa aaacaactcc atttttatta agtcctgctt ttaaatcttt tagcattttt
     7081 ataggatcac ttctatgata aatcacccca agacagaaaa tcacatcaaa tttcaagcca
     7141 tagcttggaa gatcttctac gcctaaaagt tcgtatttta taggagtttt agctaaagcg
     7201 ttaatgagtt caaattgcaa acggtatttg atagaaggat caaaacctat gagttttgca
     7261 ggattaaatt caagcatttt aaacatataa taaccattat tacagcctat atcagcaacg
     7321 catttttgag aaatttcgtt catgaaaggc tttagaatgt tgaatttaat aaaactttgc
     7381 cattctgtat cgatgaaaag atcgtctatt ttaaaaggac cttttctcca tggtttaagt
     7441 tcttttgcta tagctaagat ttcatctttg gcttgagaat ttgtagataa attcacgcta
     7501 tcgcctaaag aaaaattaca agcaagattg agagctttaa gttcttgaat tttagcgtat
     7561 aaagggtgat ttagaaattg tttttcaagt aaattttctt gcatttttat ccttgacatt
     7621 tgcttttaat gctaaattat aacattaaaa gcttttatgg caatataaat ctcatatgca
     7681 ttaagtattt gatcaaaaat aaatttttaa aaactcaaaa atacttccca aagcttacat
     7741 aagctttaga actataatca tcatctagtt tatatttctt taaagctcta gctaaatcaa
     7801 gcttgacata aaaattccct gttttattat aaagcagttg taaaccataa gcatccatat
     7861 agtttgtttc acttgctcta tatagtttag aatcattctc ataccaagaa taacctatat
     7921 cataaaaagg agtgatataa aaatctttta aaggagtagc cattctaagt ccaaagctag
     7981 ccactacagc attatctcct tttccatctc cattattata agcccttact ccataaggat
     8041 ctcctaaaga tatagtttca ctactatcta atgtagctcc attgacaact tgttgataat
     8101 ttaaactaaa aagatgagta aaagtataat taaagaaata agcattgtta agattgacat
     8161 tgagtttagc aaattttcca aagccatctc catctgtttt agaactcatt cctaatatag
     8221 tagttcccct atctttaaca ttaccatagc ttacattagc actataagaa aaactatcat
     8281 tactaatgcc attataaact ccttctatac caaagcttat cgtatcagag cttttatcta
     8341 tagtcatgat atttaatctt gaattactaa gctttttatg ataataactt gaagttaaat
     8401 aaaaagaatt ataagtcgta atccacaaag gatattttaa atctatacct agattttcag
     8461 aagttcctat aaagtttgca tttttataag ctcctcctaa agcatagttt cttttagaat
     8521 aacttggagt gatttttaaa ttccctaaga aagtagtata gcttatacca tagttagttt
     8581 gtgcttcatc gcttctttgc aaataagcat taagactatc tccttgatga gctatgttat
     8641 taaaactcat actggcacca cccctatatc tgcctgattc ttttataccg taattatccc
     8701 cataaaacaa tacagaaaca aagctatcac taggggtagt ttctatcact acatctgttt
     8761 cacctggatt atctcctgct tttaaagaag caagggtttg tatgccatac atttcattga
     8821 ctttataaac tgcatcttct actaatttag tagtgatgat ttcacctttg tgattaggta
     8881 atttactttc tatagcataa tctcttacac tagaattgtt ttgaaccaca tatttaccta
     8941 aaacacctaa ggtgatattg atttgaattt gatcttttag ttcttgttgt gggatataag
     9001 ctgtagcagc aggataacca ctaacttgaa cataataaga aatgatattg gctatatctt
     9061 gtaagtcttg aactgaaata ctttcttttt tgtaatcgtt taaggcttct tgtaaaactt
     9121 gctcatctaa acctagatct ttaaagttta tgtttttatt ggtaatatga aagctaaagc
     9181 taactttatg aattgattct tctttagaag tattttttaa agaaggagtg tttgaatttg
     9241 gggttttagt ttttaaagta ttatcattag acaagttagg ttgatttttt tgagtgttgt
     9301 tattatcttt ttgagtgttt ttctttgtgt tgatggtttt tgaattatta tcatcactag
     9361 tattagaatg atctatgata atcactccat cttttacttt taaagtgttt gttgtagttt
     9421 tttaagttag catcttcttt ataaggagat tgttctaaca tttgtatggt tttttattat
     9481 ctttagtatc actagcataa aggcttaaga tagctaaact agatagtaag ataatgcgtt
     9541 tcatttgtgt ttttcctttt taatgatttc ataagagctt gtttttagat ttggttttta
     9601 atctttttta ttttttgctt tttctgtttt tattttttct ttctttttat ctttttattt
     9661 tttgtatttg cttgattgat tatcaatctt ttttgatttt taatctttaa attttgtttt
     9721 attaattttt aacaagatcc aaaaggcttt taaccttttg gattttatca tcttgagcaa
     9781 ggatttcctg ctttaaaatt atctgatact atacaagtat taccacttaa ttgagtgctg
     9841 gcttcatcta ctgtaggttc tttatcatct tcatcttgtt ttaaaacact tttatccatt
     9901 tgagtaagta aagcttcaga gaaaggaagt ggagcatttg cttcaggatt gcttgtatct
     9961 ccaccttcac tatttggctt atctaaaaca gaatctaaag aagctagttt agtatcaaat
    10021 tctcctttga tgctaaaatg attattactt tgagataagg cttgtgtttt ataagatttt
    10081 aaagtatcat caaatttata agtatcaaga tatccttgtg ctttagcata aagatcattt
    10141 actttgtttt taagtgaaat aaattctgca tctttagaac ttgctgcacc ttgattgatt
    10201 aaagctacgt aagcattgta agcatcaatg gctttatcaa gatcttcttt ggtgttttga
    10261 aagtcattgt agttatttac aagattgttt acatttctta tgagtgcttg tatgtttgtt
    10321 tttgcttgaa ggatattttt aatttctgtt acacctttat tttgaagata agtatttgta
    10381 aaatcacttc ctaaagcttc catgaaatca aagctttgat ttagggtatt gatatcattg
    10441 ctatctatat gcacattcat aggattgtca ttgacattaa tccaagaatc tacattagca
    10501 tctgctaaaa tactattaat gacatcttta tcaatatcat cttgagagat tttattgtta
    10561 gtttcactgg taaccagttc ttggttagca tttgggttga tatcaggaac ttctactgta
    10621 aaatctgtag taaagataag atttccattt ttatcttttt tatatatttt aatttgtcta
    10681 aaactacatt tttaaagttt tcatttgcac tagcttgttc gatataactg tgaatattaa
    10741 ttttaccatc ttgacctgca tcatcaaagc cagaaactag attccaaaaa ccattatcaa
    10801 catatttatt agaatctgta aaatcagtat tatatttgta tatatggatg ttatcgggtt
    10861 tatttaattt atttgcatta agagtaacaa acaatccaac actaccatct gaaccatctg
    10921 aaataatttc tgtattttta tttaaaaata tatagatatt ggagaaagtt gtataacctg
    10981 agatatttct aagatatcct ataaatcccc ctgcataggt tcccaattta ctattaccac
    11041 tcatatttcc tatattattt aagctaatat ttataaattt atcatcatct ccaacttctc
    11101 tagcaaatcc acctatataa tcaccaccgt caatattacc tatattattc aaactaatat
    11161 ttgtaaaagt accataggta ttcccagtaa atccacctgc attataacca tttgatttta
    11221 taccgccacc cttataatct acagttaaat cttttattgc actattattg ctattatcgt
    11281 cacctatata accaaacaac cctgcattat ttatatcatt tcttactgtc gtatctatat
    11341 taatattact taaagtatga ccattgccat taaaatttgc ataaaaaaca tgactatcat
    11401 ctttccctac tatcatattc acaccttgaa gctcactatt tcctgctaca ttgaaatttg
    11461 cataattttg tcctgtgcaa actccttctg agttacaatt tgccccaaag tcaatatcag
    11521 aaatcagatc aaaggtatcc acagatttca tacctgtttt accttcattt atcccctttg
    11581 cgaaataagc ccagtcttct acattggcta tagtggtttt tttagtcatt tgaattgttt
    11641 ataaatagtt cgttaaacca ttgtagtttt gagcttgaac tctgctatca agattgttcg
    11701 tattgttttt ataaacatct gtagttgatt gtcctaaagt agctgcagtt tgagctgata
    11761 cgataatact atttgcattt ttaatgcttc ctacattgac cttaacctta tctcctacaa
    11821 attggacttt accattatct tggagattga aatttcccac tccatctgca cctacattgc
    11881 ccacctcatt cccaataatt aaaacatcat tagccttgat atttcccata ttaatcacat
    11941 tgcctttatt ggctgtaaat ttaggagaga acacaggact ttcaaaggta cttctatctg
    12001 caaattcttg catcgctttg ctatctatac ttgaagtaga cactccaaat ttatttgcat
    12061 tgatagttcc acttttgcct ataaccacac cattaggatt aataagataa acattattac
    12121 ctgtagcatt aagtaaacca tctattgtag aacttttggc tccataagca atgtttaggt
    12181 agttttggtt agtttttcct tgtccaaaat ttacagtttc actcttagct atattaaaac
    12241 caccacccca ttggataaca gaatttactt tattacctgt aatattcatg gtattaccat
    12301 ttacatttat agttccactt gttccatgag tgaacttacc cccacttggt aaagcatagc
    12361 tttgggagaa aagtaaagaa cttacaacaa ttgataaaac gattttattg tttttcatgg
    12421 tttatccttt cttggtttgg tttagttcta agaacttgtc tttgtttttc ttttttcttt
    12481 tttctttttt tatctgtttg ttttattttt tctttttaaa aacaaaaata agttcttaat
    12541 cctagatttc tctaggatta ttaattgttg ataactttga tttgttattg tttttattgt
    12601 ccatccttat ttactttatc tttgcgtaaa tgcttttgcc atcttgagat attcttgctt
    12661 cataagaaag cttttgtagg ttcatatttt ctaatctata ctatagaact tagtttaaaa
    12721 tcttctttgt tttttgcatt ttttcaataa agctttgaag ttcttcttga tttaaaatat
    12781 tagagttttc atctataaaa ccttgctcac tttgtaagat taagatttct ttatttttaa
    12841 ggtaggggta ttactctttg agggtataaa gagccaatac tccctagcta gaaatattaa
    12901 taggagcatc gtatgacttc aaaaggggag ttgtgttgat tttattggat acaataagat
    12961 aataatgctc aaagttacta ataattctag cttcaacttt agtatttaaa atcagtctat
    13021 tgtttttact taaactgata tctgaaggag ctagagcatt agaagcacta taattatctt
    13081 cataatgtac taaggctcct gctaatatat ctatgaaagt gtttttaaat atatttaaat
    13141 tcccacctat atataaggta ttattataag atttagcttc acttaaacct gtaatggctg
    13201 aaggagctat aaaaatagaa ttgttatttt tatactcatc aagattgaga ttgtttatga
    13261 ttaaggtatt atcatggcca ttgtttgaaa gtccagctat aatacttaaa atcccttctc
    13321 ttttatctga agctacacca aataaagtat cattgataat gattttatta taagcagctt
    13381 cattataagc cataatcaaa taagcattat caactgcatt agaagaatag ttttttatat
    13441 ctatggtatt atgattggct ttatctaaag ctcttatgat gattttagaa cctttatcta
    13501 tattacttgc atcagtaatg ctttgaacat tgttgtaatt tatagtatta taagaagctt
    13561 ctttggcttc tgttaataca gttagatttc taagaagaag caaagtcttt aatcactact
    13621 tcattgttat tagcactact aggataaaag tcttgattat taagaaggtt tttcttagct
    13681 gtataaatat atacagtaga attattgata taaactttat tataatctgc actgccttct
    13741 aaggttctag cagctacaat atttaaagca tctttatagc tttgagaaag atcggttgtg
    13801 gtaagatcgt ttttaatgtt aatggtatta tgattagctc ctttagttgc aaagccacca
    13861 taaaaagaat gttggttata acctaagaag ttattagcaa tttctaaagg atgttttaat
    13921 tctatgttta aggtattata atttacttct ccattattat aagctcctgc gtagaagtta
    13981 aacaaagctt gagcaaaaat gttctcattg tttttatttt tttaggtttt taatatcttt
    14041 taatattgat agtattatct aaggcttgtc cttgttcggt ttttccaccc caaaaatcag
    14101 caaataaaac agaattataa gctaggggtt gtttatcatg gttcatatac atatcaagat
    14161 taaaaccatc tatgtctaaa aggtttttac tggcttgaaa gtttttatct gttccactat
    14221 ctatataacc tgcactaata tgagcagcag ctaaactagc ataagctttg cttggaccat
    14281 ggataatcat attagcatct ttgaaaagat tttattgttt tttacattgc cttgataagc
    14341 taaaccacct acaaggtgag tgattctttc atcaaaggta ttattaccat ttttatcttt
    14401 tttaggtaag gaagtaaaaa actctacact actacctgct tctatattta aactattatt
    14461 tgtagaatct ccataagtgg ctatagctcc gattaaataa ggagcaccat ttaaggctaa
    14521 atcataagtg ttctcaactc ccatactaat atgggcatct ttttgaagta tggtttggtt
    14581 atagcttgca ttaccataat gagtaaaggt agaactcatt aagaaattca tgcgttgatt
    14641 gcttttagaa ttactagggt tttttatatg agtatcttta ggtttaagat aaaaaaccga
    14701 actaagttct ccttgttcta atataagttt attataactt gcatcagcat gatcggtttt
    14761 tactgtgatt aaaaaaggaa gcactctaac tgtttttata ctatgatcgg ctgtattaac
    14821 accatgcctt gctttaaaag aaagaacttc atcttctctc atatcaggag taagtaaata
    14881 atgtttaaaa tttaaatcgt ttatatttgt aatatttggt ttatgattgt taaatattgt
    14941 taatatattg tttagaactc ttagcataat aatttatacc ttggaatttt ttataagtag
    15001 aattggtttt atcataaagt tcgttatcat taaaataatg ctttggaata ttgaaatttc
    15061 gattgtctat agtatttgct tgagtggctg caaaagcgtt gatgcttaag aaggtaacaa
    15121 tagaaagttt aaaacaaaat ttctctatac ccccccccgt gaagttaaaa agctttatta
    15181 aattaagatt ggacggaatt ttttaatata aactaaaaag cgatatcaaa gaatttccgt
    15241 tgtataatct aatgtttttt aaatgtaaaa tattttttaa ggtaaagcga tgaaaatgcg
    15301 tgtgtattat gaagatactg atgcgggtgg agtggtgtat catagtaatt atttaaaatt
    15361 ttgcgagaga gcaagaagtg aaattttttt caataaaaaa gtagatattt ttgatgcgtc
    15421 taagggacat tttttgcttg caaaagcaaa ttgcaatttc ttaaaacctg
//
LOCUS       DARBBO010000036        15121 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.036, whole genome shotgun sequence.
ACCESSION   DARBBO010000036 DARBBO010000000
VERSION     DARBBO010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15121)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15121)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15121
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.036"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            122..1528
                     /gene="aspA"
                     /locus_tag="SB854_000882"
     CDS             122..1528
                     /gene="aspA"
                     /locus_tag="SB854_000882"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEG0956893.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVSTKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVVAYSLFNSVVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1544..2881
                     /locus_tag="SB854_000883"
     CDS             1544..2881
                     /locus_tag="SB854_000883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG0956894.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFVACMLAAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     VLHGEDKPGAKLSVVIFLITVLAVVLYATAISSNIKWIDPVVVSRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            2989..4350
                     /locus_tag="SB854_000884"
     CDS             2989..4350
                     /locus_tag="SB854_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3014 family protein"
                     /protein_id="HEG0956895.1"
                     /translation="MKIKVGLIFSGIACLFLTACVNQVKQNTTFENTLTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAVEESYKYDVDLENVSPKAA
                     KFIGTTLLNDNIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRVLMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKAADLFREVAIIYPKNKTIKKEARIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAIATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            4360..4728
                     /locus_tag="SB854_000885"
     CDS             4360..4728
                     /locus_tag="SB854_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HEG0956896.1"
                     /translation="MKKNILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDTRANDFRLEIKAKN"
     gene            4752..5375
                     /gene="lpoB"
                     /locus_tag="SB854_000886"
     CDS             4752..5375
                     /gene="lpoB"
                     /locus_tag="SB854_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HEG0956897.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKSVTW"
     gene            5458..6795
                     /locus_tag="SB854_000887"
     CDS             5458..6795
                     /locus_tag="SB854_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956898.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDAFGRIATSKIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6805..8007
                     /locus_tag="SB854_000888"
     CDS             6805..8007
                     /locus_tag="SB854_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956899.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVITTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSRVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQAPGLSADNRRSITVFDSTPDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNMLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANETALK
                     QIANRIAGDILNAIYPLKVASVENNEVIFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKFSYAKITEGSVKVGDICRPLSNTGSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8166..8474
                     /gene="rplU"
                     /locus_tag="SB854_000889"
     CDS             8166..8474
                     /gene="rplU"
                     /locus_tag="SB854_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEG0956900.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8485..8739
                     /gene="rpmA"
                     /locus_tag="SB854_000890"
     CDS             8485..8739
                     /gene="rpmA"
                     /locus_tag="SB854_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEG0956901.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8846..9898
                     /gene="obgE"
                     /locus_tag="SB854_000891"
     CDS             8846..9898
                     /gene="obgE"
                     /locus_tag="SB854_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEG0956902.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     ILLDLTKEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVNEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVRLGEEFAEQIALNINELDNYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNKKILTI"
     gene            10003..10758
                     /gene="proB"
                     /locus_tag="SB854_000892"
     CDS             10003..10758
                     /gene="proB"
                     /locus_tag="SB854_000892"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEG0956903.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            10832..11749
                     /locus_tag="SB854_000893"
     CDS             10832..11749
                     /locus_tag="SB854_000893"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEG0956904.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDKNIIREIKDLNPDFIVVAAYGKILPKAILDL
                     APCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKIILSTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNAKMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            11712..12365
                     /locus_tag="SB854_000894"
     CDS             11712..12365
                     /locus_tag="SB854_000894"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEG0956905.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCKQIRNGKIDENFAIYALEQIN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKEVLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFAPQNTALCDIEISLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            12362..13147
                     /locus_tag="SB854_000895"
     CDS             12362..13147
                     /locus_tag="SB854_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEG0956906.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            13153..13989
                     /locus_tag="SB854_000896"
     CDS             13153..13989
                     /locus_tag="SB854_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEG0956907.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLDQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KL"
     gene            14050..14475
                     /locus_tag="SB854_000897"
     CDS             14050..14475
                     /locus_tag="SB854_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B'"
                     /protein_id="HEG0956908.1"
                     /translation="MFEDMHPSIMLATMAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLGVNDELEAIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAVQKKELQEHLNIHLSELKQALQNNIKKI"
     gene            14486..14998
                     /locus_tag="SB854_000898"
     CDS             14486..14998
                     /locus_tag="SB854_000898"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEG0956909.1"
                     /translation="MSKLFFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVAILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            15001..>15121
                     /locus_tag="SB854_000899"
     CDS             15001..>15121
                     /locus_tag="SB854_000899"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. The delta subunit is part of
                     the catalytic core of the ATP synthase complex; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit delta"
                     /protein_id="HEG0956910.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKN"
BASE COUNT         5604 a         1960 c         2758 g         4799 t
ORIGIN      
        1 tcgtatttga aagcagttta cttattaatc aattattaac taaaaatgcg atatcattat
       61 tttatgattt aaatcaaaaa tttttgattt aaaattaaaa tacttttatg aaaggttcaa
      121 aatgggaaca agaaaagaac atgattttat tggggaattg gaaatctctg atgaggttta
      181 ttatggagtg caaactttta gagctgttga aaattttgat atttctcatg atagattaaa
      241 agattttcct cgctttgtta gggctttggc tagagtaaaa aaagctgcag ctatggcaaa
      301 tcatgaatta ggtcttttgg ataaaaatat ccaagatgcg attattaaag cgtgtgataa
      361 aattttagaa ggtgggtatt atgatcaatt tgtagtagat atgatccaag gaggtgctgg
      421 aacaagtaca aatatgaatg ctaatgaagt tatagcaaac ataggacttg aacttatggg
      481 tcataaaaaa ggtgaatacc aatatcttca tccaaatgat catgttaatt taagccaaag
      541 tactaatgat gcttatccta cagctttaca ccttgccttg catgattatt taagtgattt
      601 ggcaaaagct atggaacatc taaaaaaagc ttatgagaga aaagctgaag aatttaaaga
      661 tgttcttaaa atgggtagaa cccaactgca agatgctgta cctatgactt taggtcgtga
      721 atttaaaact tttgccgtaa tgataggtga agatatacaa agagtattag aagctagaaa
      781 attgatttta gagatcaatt tgggtggaac tgctattgga acaggaatta attctcatcc
      841 tgattatccg aaggttgtag aaagaaaaat aagagaagtg acaggttttg aatatactgt
      901 ggctgaggat ttaatcgagg cgactcaaga tacgggagct tatgtacaaa tttcaggtgt
      961 tttaaaacgt gtttcaacaa aactttctaa agtatgtaat gacttaagac ttttaagtag
     1021 tggtccaaaa tgtggtctta atgagattaa tcttccaaaa atgcaaccag gtagttctat
     1081 catgccaggt aaggtaaatc ctgttattcc tgaagtagtt aatcaagttt gttattttgt
     1141 tattggagca gacgtaactg taacttttgc ttgtgagggt ggacaattac aacttaatgt
     1201 ttttgaacca gttgtagcat atagcttatt taattctgtt gtaatgctag aaaaagcaat
     1261 gtatacttta gctgataaat gtatagatgg tattaccgca aatgaaaaaa tttgttcaga
     1321 ctttgtctat aattcagtag gtatagtaac agctttaaat ccttatattg gttatgaaaa
     1381 ttcagcttct atagccaaag aggcaatgaa cactggaaaa agagtggctg atattgcgct
     1441 tgaaagaggg cttttaagca aagaacaaat tgatgaaatt ttaactccat caaatatgct
     1501 aaatcctcac atggaagcta aaaaatagca cttaggattt aatatggata taatgataat
     1561 tttgcaagta atcgtccttc ttggggcgat ttttatcggt attcgcctag gtggtattgc
     1621 tataggttat gctggaggat taggtgtagt tatattaggg cttgttttag gtatgaaacc
     1681 tggtaatatt ccttgggatg ttattttaat tattgccgca gctattgcag caatttctgc
     1741 tatgcaacaa gcaggtggac ttgattacat ggtaagggtg acagaaaaaa ttttaagatc
     1801 aagtcctaaa tttataaatt atttagctcc agcttgtggg tggttgctta caattttagc
     1861 aggaacagga aatgcggtat tttctttaat gcctgttgta gttgatgttg caaaatctca
     1921 aaacataaaa cctagtgttc cactttcatt aatggttgtt tcttcgcaaa ttggaatcac
     1981 tgcttctcct gtaagtgcag ctgtggttta tatgagcgga gttttagagc cacttggatg
     2041 gaattatcca actttaattg gaatttggat tagcacaact tttgtagctt gtatgcttgc
     2101 agcttttata gtgagtttaa tcactcctat ggatttgagt aaggatagtg tttatcaaga
     2161 acgattaaaa gcaggacttg taaaggatgc aggagctgtt ttgcatggcg aagataaacc
     2221 aggtgctaaa ctttcagtgg taattttctt gatcactgtt ttggcagttg tactttatgc
     2281 aaccgcaatt tcaagtaata ttaaatggat tgatcctgtt gtggtttcaa gagatgcagc
     2341 tattatgagc tttttactta ctgcagcaac tttgatcact tggctttgta aagttgaacc
     2401 aggtaaaatt cttgacacta gtgtatttaa aagcggtatg actgcttgtg tttgtgtttt
     2461 tggtgtagca tggcttggaa atacttttgt tgcaggacac gaagcttcta tcaaagaagt
     2521 agcaggcgac tgggttaaac aaacccctgc tatgttagca gttgcatttt tctttgcaag
     2581 tatgctttta tattctcaag cagcaaccgc aaaggccatt gtacctgtaa ttatcactgc
     2641 tttaggaatt tcagcagcaa atccgcatga ttcttatatg cttgtagctt gttttgcagc
     2701 agtttcagca ctttttgtac ttccaactta tccgactttg ttaggtgcag tgcaaatgga
     2761 tgatacagga acgactagaa ttggtaaatt tatatttaat cactcattct ttataccagg
     2821 ggttttagct attgcaattg ctgtagcatt aggctttgta ttagctccta tgcttattta
     2881 aatcaaaccc taggtttttc tctcctaggg ttaaaatttt ttcattagtt tttaagtata
     2941 tactacgcta taatattcat ttttaatttt ctttaagaaa ggaatttaat gaagataaaa
     3001 gttgggttga ttttttcagg tattgcttgc ctttttttaa cagcttgtgt taatcaggtt
     3061 aaacaaaata caacatttga aaatacttta acacaaaaat attgtggtga tgattttttc
     3121 aatcaaaatt tagaaaaaat taaaaaaaat gatgatgtca tttatacagg attaaatgca
     3181 ggtttgattg ctagaaattg tggtgatttt aataaaagta atgtattttt tgatgctgta
     3241 gaagaatctt ataaatatga tgtggattta gaaaatgtaa gccctaaagc agctaaattt
     3301 attggtacaa ccttgcttaa tgataatata gtagattatg atggttcttt atatgaaaga
     3361 attatggtta atatatataa agctctaaac tatatggaag aagatgatta tgaaaatgca
     3421 agagttgagt ttaatcgtgt tttaatgcgt caagataagg caaaagaata ttttgctaaa
     3481 gaaattgaaa aaaatcgtgc tgatttagat aaggcaaaag aagataaaaa ttatgataaa
     3541 aatatgaatg aaaattcaaa agttatagaa gcgcaatatg acaatttatt taaagaattt
     3601 gatacaacaa aaaatttcat aaatccttat gcgacttatc ttgcttcaat atttttcttt
     3661 atggataaag attatagaaa agctgcagat ttatttagag aagtagctat tatttatcca
     3721 aaaaacaaaa ctatcaaaaa agaggctaga atttttaaag aatatgccac aaaaataaaa
     3781 gtcaaaaaag ctaaaaaata tgtttttgta gtttatgaaa atggatttgg tgtagttaag
     3841 gatgaatttg ctttaacctt accttttata gtggataaaa aaattattag cacaaatatt
     3901 gctttgcaaa ccttgaaaaa aagggaagct tcttttgcaa atttaaatat aaatggtcaa
     3961 aatacaaatg attttgtaga tttagacaat attgtcgcta ctgaatttaa aataaatatg
     4021 cctgcaatga ttgctaaagc cttagctcaa actataatta aaaccacttt aaatgtagct
     4081 gttgcaaata atgactctac aggtggatgg ctaagtcttg caacagcagt agcaactgct
     4141 gcaaccaata aagctgatgt gcgttcttgg agaggtttac caaaaagtat tgccatagca
     4201 acaatagaaa acgacggaaa tttagaaatc aaagatccac aaggcaatat tttgtttcaa
     4261 aaatcattgg ataaaaataa aaatgctctt gtgatagtgc gttcttttgc tccgtattta
     4321 cccgcaagtg ttgctatcat ggaaaaataa ggctaaaaga tgaaaaaaaa tattttattt
     4381 attttaatgt ttttacttag tgcttgtgca ccaagttatc aaataaattc aaatcaaaat
     4441 actgtaattt taggttcaaa tttaccaaaa agtttagtaa aacaatttca aaagcgtata
     4501 aatagcaatg gttatttaga atttgaagtg attttgcgca gtacttttgc taaagatgta
     4561 atttataaag tagattggtt agataaagat ggttttgtgc taagagatgt tttaaatgag
     4621 gactatcaag cccttagaat tccagcagga caagaggtaa ttcttcgtaa acttgcatct
     4681 gatacaagag cgaatgattt tagattagaa attaaagcaa aaaattaatc tcattttagg
     4741 aaggataaat catgaaaaaa acaaaaattt taggaacagc tcttattgga gctttgcttt
     4801 ttagtggttg tgcgcaaaca gcttatacag atggaaaggc aagtcaggta aaaaaaggcg
     4861 atgctttaac cttgggtctt gatagacaag attttgaaag tgcagctgaa actatgataa
     4921 atagtatgtt aagcgatcct gcttttgcaa atattaaacc aggtacaaga aaggttattg
     4981 ctattggtag ggttgtgaat gataccccgc aaagaatcga tactgaaaaa ctcaccgcaa
     5041 aaatcacttc tgcattaaga aaatcaggta aatttgttct aacttcagca gttgctgcag
     5101 gcggagcact tgatagcatg agtgaagatg taagagaatt aagagataat gatgagttta
     5161 atcaaaaaac catagcaaaa aaagggacat tggtatcgcc tgatttttct cttgcgggta
     5221 aaattagaca agataatgta aaacttagca atggtaaaac tcaagtagaa tactttttct
     5281 tactaagact tactgattta acatcaggtt tagtttattg ggaagatgaa caaactattg
     5341 ataaaaccgg ttctagtaaa tcagttactt ggtaaaataa aaattaattt atgaataaaa
     5401 ttttttagct caagtgttta gcttgggctt tttttatgat ttttaaaagg atacgaaatg
     5461 aaaaaaatat tatttatcgg ctctttagtt atggcaagtt tactttatgc acaaggttcc
     5521 cagcctgtag aaattacaca acaagatata aatactcaaa atgaaatgtc tgacgcaagt
     5581 actaaggata ttaccccaaa atcaattgaa gatttttttg aagaatttgc ggataatttc
     5641 ggtatagaat atggtataac caaagatgga aaaacttttt atacaggaaa aagtactgtt
     5701 gctgtaaatg atactgatcc acaatttgca caagctttac aaaatgctta ccaaaaagca
     5761 atgttaaatt tgcaaagcga atttataaga gatgcttttg gaagaattgc tacaagcaag
     5821 attcaaaatt atgaagcaga taattctacg aatgctaagg aatttgatga attgccaaaa
     5881 ggtgataagg ttgatcaaat tttaaataaa cttacacaat tagctggtgc tcagcttgat
     5941 aaggcattaa aagatttagg tatagataca aattctttaa gcgaagacag aaaaaagact
     6001 ttattaaagc aagaatttct taataaaact atgacaaatg ccataggttc tatgagtgga
     6061 cttgttcctg tgcaaactat agttacacaa agaagaggtg agtatgatgt aggtgttatt
     6121 gctgttattt ccaataaaac tcgccaatta gcaaaagata tggcactagc aagacagagt
     6181 gctattaagg gtaaaggcaa ggcaataagt gagtatctgc caaaagatac aaaaggcttt
     6241 ttaaatgaat atggaattcg cttagtttat gatgaaaatg gtgcacctat tattttaagt
     6301 tatggaaact ggggttatgt agcagatcct agcaatgcta aaaaaacaaa tattttagaa
     6361 gatagagcca aagaaacagc acttactatg gctgatgctg ctattataga gtttattaat
     6421 acaaatttaa gtcttaaaga tgaaagaaca actggtgata cttacgagga aatcatcaaa
     6481 caaagtatta atgttaatga tagttccact caagaacaaa ctcaaaacat aacaaatatt
     6541 attgacaaag taaatagtaa aataaaagca agcgcaagcg gtaaaattcg tggtattcgt
     6601 actcttaaaa aatggagcta tacaagtgaa aatggtattg aacatgtagg agctgtgaga
     6661 ttttattctt atgaaaattt agctaacaca aatgaggctt taaattcaaa gtcaaatgca
     6721 acaaaaaatg aagctaaaaa atcttctagc atacaaagaa gttctaatgt tgtaaatagc
     6781 atggatgatt tttaaaggta aaagatgaaa ataattaaaa ttcttttttt aggcttattt
     6841 ttaagcctaa gtcttaatgc taaagttata accacaactt caacaaaatc aagcacaggt
     6901 gaaggcacag gcttgactag ggaagatgcg ataaacaatg ccattataga ggctatagga
     6961 aaaatgagca gagtaagcat caattctctt aagaaatcta atactagcgt ttcaactgat
     7021 aattcaggtt caaatataca agataattac agcgagcaaa tttcaaaagc caccaaaggt
     7081 agagctgata cttatgaaat caatagtgtt gaacaagatg caaatggtaa atatacagcc
     7141 aatgtaacga tttttaaaac cacaacaaca aaaaagtatc aagctccagg tttaagtgca
     7201 gataatagaa gaagtattac tgtttttgat tctactccag atgctgcaaa aagaggtata
     7261 ggctcagctt tgcaacaaaa aatcatttct gatttattgc aaagtcgtaa atttaatgtt
     7321 ttagaccgtg attctagtgg ctattatgaa atggaaaaag ctttaatcaa aagtggcgac
     7381 gcagctagcg atgaagttta taaacttaaa aatatgttag caacagatta tattttattg
     7441 ttttctattt caggacttga aggtaaacaa aaaacaagca atttaacagg aaaaagcaaa
     7501 actgaaattg aagttatcgt agattatcgt gtgcttttat ttgctacaag acaaattaaa
     7561 ttttctaata ctttaagcat gaaagtcaat cttaaagaca atagtcttag tgccaatgaa
     7621 accgcactca aacaaattgc aaatcgtata gcaggagata ttttaaacgc aatttatcct
     7681 ttgaaagttg caagtgttga aaacaatgaa gtaatatttt ctcaaagctt aaatcaaggt
     7741 gatgtttatg aatgttttgc tcttgggaag gttataaaag atacttatac aaaagaaaat
     7801 acaggaagag tagaaagcaa aacaggaagt attgaaatca ctcgcacaag ccctaaattt
     7861 tcttatgcaa aaatcacaga aggtagtgta aaagtgggcg atatttgcag acctttaagt
     7921 aatactggta gtggaaatgg ctacactata ggtcgtgatg caaattatca aacccaagaa
     7981 ggcggcggag taaatctagg cttttaaatt tttagagttt gatttttctc aaactctaaa
     8041 ctctttctta aattcatcaa aaattaaaga aaaattttgt aaaatcgaaa ttttattaaa
     8101 ccactaaagc ttttaaatcc gttattacgg tgctttatgg tactaccaat ttataaggaa
     8161 aagcaatgta tgctattatc aaacacagcg gaaagcaata caaagtaagt gttggcgatg
     8221 agctaaaact agatcacttt gaagctgaaa gcaaagcaag tattgaagta agcgaagttc
     8281 ttgctatcaa tgataaagaa ttaaaggtag gtgcgccttt cgtagcaggt gcaaaagttg
     8341 ttttggaagt gatcaatcac ggaaaagata aaaaagttgt gatttacaaa aaaagacgca
     8401 gaaaagattc taaactcaaa cgcggtttta gaagacaatt tactcgcgtt gtagtaaaag
     8461 atatcaaagc ttaaggagta aagaatggca cacaagaaag gtcaaggttc aactcaaaat
     8521 aaccgcgatt ccataggtcg tcgtttaggt gttaaaaaat ttggtggcga gtttgttaga
     8581 gctggaaata tcatcatccg ccaaagagga actgcaactc atgcaggtaa caatgtaggc
     8641 atgggaaaag atcatactat ctttgctcta attgatggtt ttgtaaaatt cgaaagaaaa
     8701 gacaaagata gaaaaaaagt ttctgtatat cctgcataag tttttaggac gctttttagc
     8761 gtcttgaaaa ctttaaattt ataaatttaa cttcttttat ttactcaaat ttagctttat
     8821 aaatttaaag tcaaaggcaa tttaaatgtt tattgatagt gttaaaatta ctttagcttc
     8881 aggcgatggt ggcaaaggtg ctgtaagttt tcgccgtgaa aaacatgttc cacttggtgg
     8941 ccctgatgga ggagatggtg gaaatggtgg tgatattatt ttcgtatgtg ataataatac
     9001 ccacactctt gtaaatttca aaggcaaaag agaattacgc gcgcaaaatg gtgctggtgg
     9061 aatgggacgc aataaaaatg gcaaaaaggg tgaaaattta gaacttatag tgcccgaagg
     9121 aacgcaagtt atcgatgcac aaaccaatga aattttactt gatcttacca aagaaggaca
     9181 aagagagctt tttttaaaag gtggaaaagg tggacttggc aacacccatt ttaaacacgc
     9241 caccaatcaa cgccccgatt acgcacaacc tggtataaaa ggagaaagtc gcttagtcag
     9301 acttgaactt aaacttattg ccgatgtagg gcttgtgggc tttccaaatg tgggaaaatc
     9361 tactcttata agcgttgttt caaatgcaaa acctgaaatt gcaaattatg aatttaccac
     9421 ccttactcca aaacttggac ttgtagatgt aaatgagtat aattcctttg ttatggctga
     9481 tattccaggg attatcgaag gagcaagtgg gggtaaaggc ttaggacttg cctttttaaa
     9541 gcacatagaa agaacgagct ttttactttt cgtgctagat cctatgaggc aaatgccttt
     9601 aaaagaacaa tttatagtac taagaaaaga acttgaaaaa ttttccaatg aactttttgg
     9661 gcgtaaattt ggcatcatga tttcaaaaag tgatagtgtt cgtttaggag aggaatttgc
     9721 tgagcaaatt gctttaaaca ttaatgagtt agacaattat ctcaaagaaa taaataatcc
     9781 acaaagcttt ttaatcaaag tctcaagcct tgaaaaaaca ggacttaaag aacttaaatt
     9841 catgctttta gaagaaatta aaactttaag aaataacaaa aaaattttaa caatctagga
     9901 agtgttttat attaaaaatt tcaaacactc cctatttttt caaaaataac tagtttatat
     9961 gaaattttgg ctaaaattat aaaaattttt caaggaataa gcatgaaaag aatagttgtt
    10021 aaagtgggtt ctcatgtgat tagcgaagaa aacactttaa gttttgagcg tcttaaaaat
    10081 ttagtcgcat ttttagctaa actcatggaa aaatatgaag taattttagt aacctcggcg
    10141 gctatttcgg caggacacac caaactagat atcgatagaa aaaaccttat taataaacaa
    10201 gttttagctg ctattggaca acctttttta atcagtgttt ataacgagct tttagccaaa
    10261 tttaacaaac taggcggaca aattttactt acaggcaagg attttgactc tagaaaagct
    10321 actaaacacg caaaaaatgc tatcgatatg atgataaatt taggaatttt gcctattatc
    10381 aatgaaaatg acgctacagc tatagaagaa attgtctttg gtgataatga tagtttaagt
    10441 gcttatgcta cgcatttttt tgatgcggat ttgcttgtga ttttaagcga tattgatgga
    10501 ttttacgata aaaatcctag tgaatttagt gatgcaaagc gtttagaaaa aatcactcat
    10561 attaaagaag aatggctaca agcaaccata aaaacaggta gtgagcacgg aacaggtggt
    10621 atagtaacca aacttaaggc agctaaattt ttacttgaac acaataaaaa aatgttttta
    10681 gcaagtggct ttgatttaag tgtggcaaag acatttttat tagaagataa acaaataggt
    10741 ggaactttgt ttgagtgatt aatttattaa attctctttt aaaatcaaat aagctataat
    10801 taaaactttt aatttcacac aaagcgaaaa aatgaaaaaa attattttta tgggcactcc
    10861 atcttacgca acttgtattt taaaagcact agtagaaaat gaaaatttta aactcgtagc
    10921 actttttact cagcctgata aagccgtagg tagaaagcaa attttaactc caagtgatac
    10981 taaggctttt ttaagtcaaa attatcctag tattcctatt tttactccaa gttctttaaa
    11041 agataaaaat attataagag agattaagga tttaaatcct gattttatcg tggttgctgc
    11101 ctatggaaaa attttaccta aagccatttt ggatttagcg ccttgtgtga atttgcacgc
    11161 ttctttactt ccaaaatacc gtggtgccag tccgatccaa agtgcgattt taaacaaaga
    11221 tgaaaaaagt ggagtttgca ccatgctcat ggaagaaggg cttgacacag gtgctatact
    11281 tgaaagctta gaatgtgata taaaagataa aaattcaagt gaagtttttg aacttttagc
    11341 aaatttggcc gctaagatca tcctctctac tcttttaaat ttcgataaaa tcacccctaa
    11401 aaaacaagag gaaagtctag caacactttg tagaaaaatc aaaaaagaag atgggcttat
    11461 aaatttgcaa aatgcaagag aactttatca aaaatatcta gctttcaccc cttggcctgg
    11521 agttttcttg gaaaatggac ttaaattctt agaacttgaa cttgtggatg aattaaaaca
    11581 aaatgctaag atgggtgaaa ttttagaatt agaaaaagaa agttttttgc ttgcttgcaa
    11641 acaaggagtt ttgcgtatta aaaaacttca agaaagtgga aaaaaagctc ttgatggtag
    11701 gacttattta aatggaaaaa ggcttaaaag tgaagatagt ttgtgttgaa agtatagact
    11761 caactcatct ttttttatgc aagcaaatac gcaatggaaa gattgatgaa aattttgcta
    11821 tttatgcttt agaacaaata aatggagttg gaagtaggga aaattcttgg cagagctcta
    11881 aaggaaattt acatctttct ttctgtatta aagaagaaga cttgccaaaa gatttacctt
    11941 tagcttctgt gagtatttat tttgcttatt tacttaaaga agttttacaa gaaaaaggtt
    12001 ctaaaatttg gcttaaatgg cctaacgatc tatatttaga tgataaaaaa gctggagggg
    12061 ttataagtgc taaaatttca aattttatca taggcggtat gggtttaaat ctgaaatttg
    12121 caccccaaaa tacagcttta tgcgatatag aaatttcgct taaagattta gtgagtgagt
    12181 ttttgcaaaa agtagaaaaa aaaattttat ggaagaatat ttttagcaag tatatgttag
    12241 aattcgaaaa atcaagaaaa tttagcgtcc atcatgaagg taaagttttt tcacttgaaa
    12301 attctttttt gtatgaagat ggttcaattt tactaggcga taaaagggtg tatagtttaa
    12361 gatgagcgaa attattacaa tagcaaatca aaaaggtgga gtaggaaaga ctacaacagc
    12421 agtaaattta gccgcttctt tggctgtggc tgaaaaaaaa gtacttttga ttgatgttga
    12481 tccgcaagct aatgcgacta caggacttgg ttttaatcgt aataattatg agtataatat
    12541 ttaccatgtt tttataggaa gaaaaaagct ttcagatatt attttaaaaa cagaattgcc
    12601 acaacttcat ttagctcctt caaatatagg tcttgtaggt atagaacaag agcttgctaa
    12661 aggtgaaaat aatgagaaaa aaatgctgct taaaaatcaa attcaagaag tgattgatga
    12721 gtatgatttt attattattg attctccgcc tgctcttgga agtattacta taaatgcttt
    12781 tgcagcaagt gatagtgtaa ttatccctat acagtgtgaa ttttatgcgc tcgagggtgt
    12841 agctatggtt ttaaatacaa ttaaaattat caaaaaaact attaattcta aactcagggt
    12901 tcgtggattt ttaccgacaa tgtatagctc tcaaaataat ctttctaaag atgttgtaga
    12961 tgatttgaaa caaaatttta aaaaacaact ttttactatt aatggaaacg aagatgactt
    13021 tattgtgatc cctcgcaatg taaaacttgc agaaagtcca agttttggaa agcctataat
    13081 tctttatgat attaaatcac caggttctgt tgcttatcaa aatttggcgt attctatatt
    13141 aggataatta taatggggtt aaataaagat aggggtttaa gtagtttaat cagtgatatg
    13201 gatactgttt atagtaaaga attgggtttt gataaaaatc aaagcactat gatagaaatt
    13261 gatcaaattt cacccaatcc atttcagcca agaaagaatt ttgatcaaga agctttagat
    13321 gaacttgcta attctatcaa agaatttgga cttattcagc ctattattgt atttaaaaaa
    13381 aataataaat ttattttaat tgctggggaa cgtcgcttaa gagcagtgaa agcattagga
    13441 aaaaaagaaa ttctagcttt tattgctgat attgatgaga ataagcttag agaattggct
    13501 cttattgaaa atatacaaag agagaattta aaccctattg agcttgctaa ttcttataag
    13561 gatttaatgc aagttcataa aattactcaa gagaatttag cagaacttat tcataagtct
    13621 cgtactcaaa taacaaatac tttaagactt ctgaatttag atattagaac tcaagagttg
    13681 attgcttctg gaaaaatttc tcagggtcat gctaaagttt tggttggttt agatcaaaaa
    13741 gatgaaaaaa tgttggttga tagcataata ggtcaaaaac ttaatgttag agatactgaa
    13801 aaaatagtta aaaaaataaa aaataatgaa agcttaccta atcaagaatt tgaagatgaa
    13861 ataaaaaaat taaaacaaat actaaatcgc tttggatttg actgcaaaaa taaaaataat
    13921 gattttgtaa ttcatttaga aaatattgat aaaattaaaa aattaatcaa aatgcttgaa
    13981 aagctttaac caaaatctta gcttttttat ggtaaaatag tccttcaaaa attctaacca
    14041 aggagaatta tgtttgaaga tatgcatcct tccataatgc ttgctactat ggctattttt
    14101 ttagctatga tagttatttt aaatagtatg ctgtataagc cgcttttaaa atttatggat
    14161 gaaagaaatg attctataaa aaatgatgag aataaagtaa aagaaaattc tcaagaagtt
    14221 ttaggtgtga atgatgaatt agaagctatt catattaaca ctagagaaga aattcaaaaa
    14281 attaaacaaa gtgctatagc tgctgctaaa gaagaggcag agcaaattct tagaagcaag
    14341 aaagaagaat tagaaagaaa aatggccagt ttttatgcag atttagccgt tcaaaaaaaa
    14401 gagttgcaag aacatttaaa catacattta tctgagctta agcaagcttt gcaaaataac
    14461 ataaagaaaa tttaagagga gagaaatgag taagttattc tttattatat ttttgctacc
    14521 tttgtatgct tttggtgcat caaacggtag tggagaatat gatattattc caaggactat
    14581 taattttcta atttttgtag ctatattgta ttattttgtt gcaactccat ttaaaaattt
    14641 ttacaaaaac cgtattgtaa aaatttcttc taaacttgat gaaattcaaa aaaaactttt
    14701 agaaagtaaa gctaagaaat tagacacgat gaaaaaactt gaagaagcta aggcaagtgc
    14761 tgctgccgct ttaattacag caaaaaaaga agctgaaatt ttagttcaaa atattaagaa
    14821 agagactcaa gatgagttag atttacttca aaaacatttt gaggaacaaa aagattatga
    14881 atttagaaaa atggaaaaag aattagtatc aaatacttta aatgaaattt tttctgatcc
    14941 aaatatgaca ttaaaacaga gtgaaataat agaacttatg atgaagaagg tatcttaaat
    15001 atggaaaata taattgcaag aagatatgca aaagcgatag cttcaagagc tgatataaat
    15061 gatttttatc agaatttgtg tattttaaat tctgcttttg ttttgccaaa atttaaaaat
    15121 a
//
LOCUS       DARBBO010000037        14187 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.037, whole genome shotgun sequence.
ACCESSION   DARBBO010000037 DARBBO010000000
VERSION     DARBBO010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14187)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14187)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14187
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.037"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..518)
                     /locus_tag="SB854_000900"
     CDS             complement(<1..518)
                     /locus_tag="SB854_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG0956911.1"
                     /translation="MLNKELEIFKKNLSSYTQSCRNFFLKQGAFSLYHSKNMDNFIKK
                     AYDIVLKDYFDDFSPPNDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPM
                     IKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKIKFES
                     IIKENKNDFAKL"
     gene            662..1726
                     /gene="mqnE"
                     /locus_tag="SB854_000901"
     CDS             662..1726
                     /gene="mqnE"
                     /locus_tag="SB854_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HEG0956912.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFTLGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEIDFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEVRKKICHGKVSSENWLKIHKLWHEKSKQSNATMLFGHIEER
                     HHRIDHMLRLRDLQDQTGGFNAFIPLVWQRDKSFIQTDKIMDSEEILKTIAISRLVLD
                     NIKNIKAYWATMTLNLAMVAQEFGANDLDGTIEKESIQSAGGAKSAKGTSLKTFIDMI
                     KTSNLIPVERDSLYNELKTY"
     gene            1736..3055
                     /locus_tag="SB854_000902"
     CDS             1736..3055
                     /locus_tag="SB854_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEG0956913.1"
                     /translation="MSFFKLKENNTSFKTEVIAGLTTFLAMVYIIPVNSSIVGNTGMP
                     IEALITATALITIVASAFNAFFANTPVAMSVGMGLNAYFTFAVCLGQNIAWQSALGAV
                     FISSIIFLILSFTHFRLWVIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLASSIIAWIFHLDNASFPVQIF
                     SWPNFSMENGLGAIFLQLDIKSALNITVIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            3069..3512
                     /locus_tag="SB854_000903"
     CDS             3069..3512
                     /locus_tag="SB854_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HEG0956914.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKEDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDNTKKLDTIEIFNIPDLSKHKKILLIDDIVDSGESLAEIKKV
                     LLEKFPHIELKITTIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
     gene            3557..4255
                     /locus_tag="SB854_000904"
     CDS             3557..4255
                     /locus_tag="SB854_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HEG0956915.1"
                     /translation="MRIKFISFILIFFAIFAFAKEQNLDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNTITPEFIRLGVRNFFDNLLVPLRFVGNILQFKFEE
                     AGEEFKRFTTNTIMGFGGLMDVASKMGLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLALPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            4265..4834
                     /locus_tag="SB854_000905"
     CDS             4265..4834
                     /locus_tag="SB854_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid-binding protein MlaC"
                     /protein_id="HEG0956916.1"
                     /translation="MKKIFLILALFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAADGIFKLFDSIIDYKLMAKLSLSKNYSKLNPKEQEKFTTAFEASLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLVYDVDVLGVSIV
                     QTYRSQFGDILANQGFDALLQKLESIVIE"
     gene            4834..7305
                     /locus_tag="SB854_000906"
     CDS             4834..7305
                     /locus_tag="SB854_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HEG0956917.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDADLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDTNRTKARNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNDLVEKRDLATDEKEKDQIRLAIKKHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGFALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYIALVLIITLSVVVHLITHFIENTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLMLSNIEPIIKLGIMMSIGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYGISVLAIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSNTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSILSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQHKEHILKQ"
     gene            complement(7336..7938)
                     /gene="rdgB"
                     /locus_tag="SB854_000907"
     CDS             complement(7336..7938)
                     /gene="rdgB"
                     /locus_tag="SB854_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HEG0956918.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAHYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            8105..9400
                     /locus_tag="SB854_000908"
     CDS             8105..9400
                     /locus_tag="SB854_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0956919.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSIDFFIIAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFIGGIIGGIFLHLDTLNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFGENLGVVDIYKNSKNLVVKFDSKLTSKEELEGKL"
     gene            9397..10206
                     /locus_tag="SB854_000909"
                     /pseudo
     CDS             9397..10206
                     /locus_tag="SB854_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344764.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
     gene            complement(10199..11860)
                     /locus_tag="SB854_000910"
     CDS             complement(10199..11860)
                     /locus_tag="SB854_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG0956920.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYEARASVYDLGLDLEQSKEVQNRLILADSDTQTV
                     EFLKEHGFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAENLSVVRK
                     DFTRQSGCYNLLNFENLEALLEFLQSKSPKYPYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDEKKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIMLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSIESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFSCIECGKE
                     FATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMIN"
     gene            11938..13260
                     /locus_tag="SB854_000911"
     CDS             11938..13260
                     /locus_tag="SB854_000911"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HEG0956921.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFSQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELIEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAISENTALILKTHKSNF
                     ALMGFHSEANIKDLHELAKEKGLLSYYDLGSGWCENLNEKLIKNEPKIKKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEKKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILIINQMENL"
     gene            13257..>14187
                     /locus_tag="SB854_000912"
     CDS             13257..>14187
                     /locus_tag="SB854_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEG0956922.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEKLKNY
                     LYTIENKENDEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGYFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSF"
BASE COUNT         4995 a         2127 c         2126 g         4939 t
ORIGIN      
        1 aaaagcttgg caaaatcatt tttattttct tttataatac tctcaaattt tatcttaatc
       61 cctttaaata aaatcctaga accacatatg aaacgagttt gtattataga agtcttaagc
      121 tcattgctag cattataaag tccattaaat tctaagataa ccgaatcaat ttgcaaatgc
      181 gcatcattta aaatttcgat aaaagcctta atcataggtt ttaaatgaaa agccttaata
      241 tctttataaa caaaaatcaa agaaatactt tcattaaaac aaagactatt atttgcatat
      301 gctttgcttg ctaaaacaca aaaagggata ttatcatttg gaggtgaaaa atcatcaaaa
      361 taatctttaa gaactatatc ataagctttt tttatgaaat tatccatatt tttagaatga
      421 tataagctaa acgccccttg cttaagaaaa aaatttctac aactttgggt ataggaacta
      481 agattttttt taaaaatttc taattcttta tttaacaaaa tttctactct ctttaaaatt
      541 ttaatatttt aataataatc ttaacaaaaa tatcttttat tttggctttt tctataaact
      601 ctttttcagt aagcaaaaat tataatgctt tatttaaaaa cagcaaaaga gtaaaattaa
      661 aatgaaaaat ttaatcacca aactagaaaa tgaagaaaga ttaaaccaag aagaagccaa
      721 tgcactttgg gatctagatc tttttacctt aggcaaatac gctcacaaaa aacgcactaa
      781 acttcatgga aaaaaagtct attttaatat caatcgccat atcaacccaa ctaatatctg
      841 tgcagatacc tgtaaatttt gcgccttttc agcgcaccga aaaaatccta atccttattt
      901 gatgactcat gaagaaatca tgaaaatcgt cgatgaaacc gtaaaacgag aaaccaaaga
      961 agtgcatatc gtttcagctc acaacaaaga tacaacttgg caatggtatt tagaaatttt
     1021 taaaatgata aaagaaaaat atcctaatct tcatgtaaaa gctatgactg ctgctgaaat
     1081 tgatttttta catcgtcgtt ttaaaatgag ttatgaagaa gtgatagaaa aaatgcttga
     1141 atacggcgtt gattccatgc caggtggtgg agctgaaatt tttgatgaag aagtgcgtaa
     1201 gaaaatttgt catggaaaag ttagcagtga aaattggctt aaaattcata aactttggca
     1261 tgaaaaaagc aagcaaagta atgctaccat gctttttgga catatagaag aaagacatca
     1321 caggatcgat catatgttaa gactgcgtga tcttcaagat caaaccggtg gattcaatgc
     1381 ttttatccct ttagtttggc aaagggataa aagctttata caaactgata aaatcatgga
     1441 tagtgaagaa attttaaaaa ccattgccat ttctcgttta gtgcttgata atatcaaaaa
     1501 tatcaaagct tactgggcaa caatgacttt aaatttagcc atggtagcac aagaatttgg
     1561 agctaatgat ttagacggca ctatagaaaa agaaagtata caaagtgcag gtggtgcaaa
     1621 gtccgccaaa ggcacaagtt taaaaacttt tatcgatatg ataaaaactt caaatcttat
     1681 tcctgtagaa cgcgatagtt tatacaacga gctaaaaacc tactaaggag aaaaaatgag
     1741 cttttttaaa ctcaaagaaa acaatacgag ttttaaaacc gaagttatag caggacttac
     1801 tactttttta gctatggttt acattatccc cgtaaattct agcatagtag gaaatacagg
     1861 aatgcctata gaagctttaa tcaccgcaac agctttaatt accatagttg caagtgcttt
     1921 taatgctttt tttgccaata ctcctgtagc tatgagtgta ggaatgggtt taaatgctta
     1981 ttttaccttt gcggtttgtt taggtcaaaa catagcttgg caaagcgcct taggagctgt
     2041 ttttatttca agtattattt ttctcatact ttcttttacg cattttcgcc tttgggtaat
     2101 ccgcaatatc ccaaaagatt tacgccttgc aatttgtgcg ggcataggtt gttttattgc
     2161 atttttaggc ttaagtcaaa tgggtgtgat aatgcataat aaagatacct tagtcagcat
     2221 aggaaatttc aaaagccctc atgtgctttt tggaattttc actctagctt taatcatctt
     2281 tttttgggct ataaaacttc gcggagcttt tattttgggg gtattagcaa gctctattat
     2341 tgcttggatt ttccatttag acaatgcaag ttttcctgtg caaatctttt cttggccaaa
     2401 ttttagcatg gaaaatggtt taggagccat ctttttacaa cttgatatca aaagcgcctt
     2461 aaatattact gtgataccta taattcttac tttttttatc actcaacttt ttgatagcat
     2521 aggaactatc acaggtgtgg gtgaaagagg aaagattttt gatgatccca aaaatggaga
     2581 aaaaaaacta agcaaaacct taatggcaga tgcaacagga tcagccttag gagctatgac
     2641 aggcacttct acagttacag cctttgttga aagcactaca ggggttgaaa gcggaggaag
     2701 aactgggctt acagctttag ttgtagctat ttgttttgct tttacacttt ttttactgcc
     2761 actttttaaa gccattcctg caaacgcaat ataccccgta cttgtaatgg ttggaatttt
     2821 aatgtttatg gaagttaaaa atatagattt taaagatagt gctatagctg tagcaagctt
     2881 ttttactatt atcatgatgc cttttactta ctccatcacc acaggttttg cttttggttt
     2941 tctttcttat ttacttgtaa gaatttttaa acgcgaatgg gataaaatca atcttggcat
     3001 tatagtttta agtttattat ctttgggtaa ttttttactt atggcactac aataaataag
     3061 gatatataat gatattttac tcctatgaag aatttaaaga agatgtaaaa attcttgcta
     3121 aagaaattaa agaagatttt aaccctgatg cacttttagc tatagcaaga ggggggatga
     3181 gtttaggaca ctctttagca gtggctttaa aaacgcgtca actttttgct ttaaactcaa
     3241 ttcattacga taatacgaaa aaacttgata ctattgaaat ttttaacatt cccgatttaa
     3301 gcaagcacaa aaaaattcta ctcattgatg atatagtaga tagtggagaa agtttagcag
     3361 aaataaaaaa agttttgctt gaaaaatttc ctcatataga acttaaaatt acaaccattt
     3421 tttacaaaaa aaccgctctt ttagagcctg attttaaagt aaaagaagct actgaatggg
     3481 tggattttta ctgggatata aatcttgatt aaaaatttgc tataatttta cttttaaaat
     3541 ttttaggagt ttttgcttga gaataaaatt tatatctttt attttaattt tttttgctat
     3601 ttttgctttt gctaaagaac aaaatttaga tgattttgaa caagaatacc aaaactatca
     3661 agtaaacgat ccactttcag gatataacaa agctatgaca agttttaatg tggctttgta
     3721 tgattatggt ttgcgtcccg ttcttaaggg ctataacact atcactcctg aatttataag
     3781 attaggggta agaaatttct ttgataattt acttgttcct ttgcgttttg taggcaatat
     3841 tttgcagttt aaatttgaag aagcgggaga agaatttaaa agatttacca ccaataccat
     3901 tatgggcttt ggtggactta tggatgtggc atcaaaaatg ggtcttaaaa aacatcccgc
     3961 ggacttagga accgttttgg ctcactgggg tgtaggaagc ggttttcata ttgtcttacc
     4021 tatactcggc cctagtaatc ttagagatac tcttgcttta cctgcaactt ggtatgcaag
     4081 ttttactgct tacattgatc ctacttgggc aagtatagct ataagtgctt atggatttgg
     4141 taatgaactt agttttagac ttgatgaaat tgatgaaatt tatcacaaca cgcctaattt
     4201 atatccattc ttgcgtgatg cttacgagca aagacgcaat gaacttagca aataaaggaa
     4261 aataatgaaa aaaatatttt taatcttggc tttatttttt aatgcttttg ccttacagct
     4321 agatgaaatt tctagtacta tgcaaaaaaa cattgatgca agcttaaaac ttttacaaga
     4381 tagcaaagaa gacaaaaaac aagctgctga tggaattttt aaactttttg atagcataat
     4441 agattataaa ctcatggcaa aactcagtct ttcgaaaaat tattctaaat taaatccaaa
     4501 agaacaagaa aaatttacca cagcctttga agcaagtctt aaaaaaagtt ttaccgataa
     4561 actcagtctt tataaagatc aggttttaaa ggtcaaaaat ggtgagttaa aaaatgaaaa
     4621 acgctatttt ttaaccactt ctatggtagt agatggggaa gaaaaaaata tcattttcaa
     4681 attttacaat gataataaca actggcttgt ttatgatgtg gatgttttag gtgtgagtat
     4741 agtacaaact tatagatcac aatttggaga tattttagcc aaccaaggct ttgatgccct
     4801 acttcaaaaa cttgagagta ttgtcataga ataatgtttg caaagctttt aaagtttttt
     4861 atttctcgtc caaaaagtac tttttttgga accttgttta tatgcctgtt tttaagcttt
     4921 tttgctttta agcttagcgt agatgcaagt gctgaaagtt tacttttaga agatgatgca
     4981 gatttaaaaa cttttagaga aatttcaaaa cattataaaa gtgataattt tttactttta
     5041 gccttcaaac cctatgatga aaaacctttt tcaaatgaaa atttagccaa attaaaaaaa
     5101 cttcatgaag aattagaaaa ggccccttta gtagagcgcg tttttagcat catcaatgcc
     5161 cctttgcttc aaagttcaca aaatacggat ttaaaagaac tgttaaaaaa tatcccaaac
     5221 atagaaagcc aagatacaaa ccgcacaaaa gcccgaaatg aaattttaaa tagtcccttt
     5281 tataaaaata atatcatctc aaaagatgga aaagtaacag ggcttattat ttacttaaag
     5341 cctgatacag tttataatga tcttgtagaa aaacgcgatc ttgctaccga tgaaaaagaa
     5401 aaagatcaaa ttcgtcttgc tataaaaaaa catcaagaca agcaaaaagt tatcacgaaa
     5461 caaagtctag atactattaa aagcatagtt cgaaattatg aaaaaaataa agatacgctc
     5521 taccttggtg gcgtaagcat gatcgctgat gatatgatag cttatataaa atctgatctt
     5581 gtactctatg gtgtttctct tgtattttta ctaggatttg cactttatta ttttttccgt
     5641 tcatggcgct ttgttttttt acctcttttt atttgtttta taagcttaag tgcagctagt
     5701 ggagtttttg cacttttaaa ttttcaaatc acagttattt catcaaatta cattgctttg
     5761 gttttaatta tcaccttaag tgtagttgtt catttgatca cgcattttat cgaaaatacc
     5821 caaaatcatc ccaaagctaa agttgagcgc atagtgcttg aaaccttact agccaaagca
     5881 aatcctagcc tttatgccat tgttacaacg atgataggat ttttttcttt aatgctttca
     5941 aatatcgaac ctatcataaa acttggtatt atgatgagta taggtatagg tttagctctt
     6001 atctttagtt atttattttt agcaagtatc ttagttcttt taaaaccaaa aaactatcat
     6061 aaaaaagagt ttaaatttaa tcttttagcc ttttgtgcta aaaccgctct tgatcctaaa
     6121 aagcgtcgca tgatttatgg aatttcagtt cttgctataa tcttagcttt aataggcatt
     6181 tcaaaactca gagttgaaaa ttcttttgtc aattatttca aagatggcag tgaaatcaaa
     6241 aaaggacttt tggttattga taaaaatcta ggtggaacct tgcctttaga agtcatcatt
     6301 cgttttccaa ataataaaaa cgatcaaaat acaagcaata ctcttgatag ttttgaaagc
     6361 gaatttgaaa atttagccac acaagaaact tattggtttg actctaaaaa aacacgcatt
     6421 gcaaaaaaag ttcatgaatt tttagaaaat aaagaatttg taggctcgat tttaagtctt
     6481 aatagtcttt taaccctagg gaaaaatatc aacgatggaa aagagttaga tgattttgct
     6541 cttgcgtttt taaatgagaa tttacctgct aaatttaaac aagacttgct ttcacctttt
     6601 gtaagtatag agaataacga gttaagattt agtatgcgta ttgttgattc tgatccgaat
     6661 ttaagacgta atgaattttt aatagatctt aaaaaacagc tcaacgagct tgtaaaaaat
     6721 gatggagtag aagttcaaat cacaggtata atggtacttt ataataatat gctccaaagt
     6781 cttttttcat cgcaatttga tactcttata tttgtaattt tagctatttt tatacttttt
     6841 atcattgttt ttagagattt aaaattttca gttgcggcta tattggtaaa tgttattcct
     6901 ttaagtgtgg tttttgctct tatggggctt ttaggtattc ctttggatat gatgagtatt
     6961 actatagctg ctattgctat aggtataggc gttgatgatg ctatacatta tatttatcgt
     7021 tttagggaag aaattaaaaa caaaagccta gaagaagcca ttatgatttc tcaccttagt
     7081 ataggttcgg cactttatta tactaccatt agcatagttt taggttttag tgttatgatg
     7141 agtagcaatt ttattccaac aatttatttt ggaattttaa ccgtttttgt aatgattttg
     7201 cttttaagtg gaagtttgtt cttattacca agctttttaa tcactattta ttctaagaaa
     7261 accaagtttc caaaccaaca taaagagcat atattaaaac aataatagct atatatttta
     7321 aaaaattttt catttttatc ctttgtttaa aatctttaaa atgatttttg caagctctaa
     7381 ggctttaaaa cgatgagaga tgttattctt ctcatccacg ctaagctggg ctaaggtttt
     7441 atcaaaaccc tttggaataa aaagactatc ataaccaaaa ccattttcac ctttttctgt
     7501 atctattact tttccatgca tggttccatg cgtactaaat tcccccatca aacctaccat
     7561 agcaatagca gcaacataat gcgccttact ttgtttaaaa ccttttttta tcatttcatt
     7621 gacaagttta tcacggttac ttttatcatc gcccttacca ctaaatcgag cagaataaat
     7681 tcctggattt ccttctaaaa catctacaca aatgccacta tcatcactta aagcgataaa
     7741 atcttttttt tgcttttcat ccaaagcatt aaaaaccgct cttgctttaa tcaaggcgtt
     7801 ttctttaaaa gtttttccat tttcttcaat ctcaaaaggc attagaactt catcaaaagc
     7861 ataaatttca aaatctttta aaatttcttt aagttctaaa actttatgtt tattgctcgt
     7921 agctaggata atcttcataa caaaagctcc aaaataatat caaaaacaaa aatatgattt
     7981 tataaaattt atccttgtgc gtagctttta aatatcaaat gataaaacga tgttaatcaa
     8041 tgcttaatcc atttcatagt aaaattatcc taatttaaat ttcaaattta ataggaaatt
     8101 gataatgcta aacaatgtct tacccttatc tttcatagtt ggaacaagat tttttgggct
     8161 ttttatagtt ttgccagttt taagtcttta tgctttaaaa cttgaaggtg ctaatgaatt
     8221 tttagtggga cttttagttg gtgtttacgc cttaacccaa atgattttac aaatgccttt
     8281 tgggatttta agtgataaaa ttggtcgtaa aaaaaccatg ctcattggac tgattatttt
     8341 tataataggc tctttaatct gctcttttgc ggaaaatatt tacaccatgc ttttagggag
     8401 aatgctccaa ggtgcaggag ctattggagc agtagctacg gcaatgataa gtgattttat
     8461 cacagaagaa aatcgtggta aagccatggc ggtaatgggt tcttttatag gacttagttt
     8521 tgcagcctct atggtcattt ctcctctaat gagtgcaaaa tggggtttat ctagcctttt
     8581 tgatcttagt gcggctttgt ctcttttatg tataatttta ctgtataccg ttgtacctaa
     8641 agaaaataaa atcactcatg aaaatgaaaa aactcctttt tttcatctta ttaaacaaaa
     8701 aaatttagcc cttatgaatc ttactaattt catgcaaaaa atgcttatga gtatagcatt
     8761 tttaagtatt cctattattc tagtaaaaca tttaggcttt gcttctgata aactttggat
     8821 tgtttatagc gcttctatgg tagcaggttt tatcgctatg ggctttgctg gaagtttagg
     8881 cgaaaaaaga ggtttagcta aacaaatttt actcttagga attgtttttt tcatactttc
     8941 ttatcttttt tttgctttta gtaattctat tgattttttt atcatagcag ttgtgatttt
     9001 ttttataggt tttaatttac acgaacctat tatgcaaagt tgtgcatcaa aattttgtaa
     9061 agttcatgaa aaaggtgcag cattagggtt atttaatgct tttggatatg gtggaagttt
     9121 tataggtggt attatcggag ggatattttt acatctagat accttaaatc ttttagctat
     9181 tattttagta attttagctc taatttggct tgtggcatta tttttcttaa aaaatccagc
     9241 tgattttaaa aacctttatc tacctttaga aacgccttta aatttcagta cttttggtga
     9301 aaatttaggg gttgtagata tttataaaaa ctctaaaaat cttgttgtta aatttgatag
     9361 caaacttaca agtaaagaag aattagaagg caaattatga aaaaaatatt atttttattc
     9421 tgttcttttt ttctagcttt tgcaaaacca agtctagaga tacccaagct ctcaaaacaa
     9481 gcaaaataaa actttatttt agaaaatgtc aaatttaatt ataatggcac aatatataaa
     9541 atttttatag ctaaaaacaa gaatgaaaac tcaaattata aatataaaat catttattta
     9601 ctcgatggaa atgccttttt tcctcttttt ttaaatcttt tcaacactcc tgtcaaagaa
     9661 aatcttttaa ttattggaat aggttatgat aataatttag cttttgatac acaaaaacgc
     9721 actaaagatt atacgcctac aacaaattta aataaacaag gtggaggtag taaagaattt
     9781 agaaatttct taataaccca actcatccct tatatcaaca aaatgtatcc tattgatttt
     9841 agccatcaaa ttctctttgg acattctttt ggaggacttt ttgccattga tacacttctt
     9901 tatgatagta agatttttag tcattatttt attatttcac cttctttatg gtgggataat
     9961 agtgagtttt tacctaatat cataaaatta caaacttgcc ctaaaattta catcggatta
    10021 ggttcattgg aaacaaattc aagtattatc aaaggtgtaa ctaagctcaa tgctcaaaaa
    10081 cttagcgaaa aaatatccaa agaaactaat tgtaaaactc attttaaact ttttaaaaat
    10141 gaaactcatg gaagtgtcat atctaaagct atgctgtgga tgaaaaagct tcttgatctt
    10201 aattaatcat tgcttttatc atcacttttg ccttgcaatc tgcacagcaa taaagtgttt
    10261 tgattttatt ctcatcatta ccaaatttag gcttcattaa attggctatt ttttctacag
    10321 cttttttggt cgcaaattct ttaccgcatt ctatacagga aaaaagctca tcttttgcca
    10381 tggtttgata ttcaaaataa gaagctctaa actccattcc actacgaaat aattttaaag
    10441 tatctttttc agcacaactt aactcacaat acccacaagt cgtacaaaga gaagcattga
    10501 atttcaaagc attttcttgt ttatcagcga ttaaagctcc tacattacag gcacccacac
    10561 aagaaagaca aagcgtacag gtattaggat tgatttctac cttaccataa cgcaaccatt
    10621 cgccactttc tatactacca aaatcttcat tttttatcat ttcttgcatt cttttggcaa
    10681 aattttctct tgtagttaag gtgttattat gaaaatcata ttttaaatct tgtatgaatt
    10741 cttgctcttt taaaacattt tgcaattctt tttcatcttt agcaacaaaa atagcttttt
    10801 tttgaaattt tctctcaaaa aaagtattta aaagcataat ggcttcattg ctaccacgag
    10861 atacaaagtc cgtataaaaa accaaatttg caccactatt ttgcaaaagt gttaaaaaat
    10921 gcatagaaga aagccatttt tcaccctcta tcataaaggg taaaacatct tttggtaaag
    10981 caagatttaa attttctaaa gacatttttt taggaatgat taaaattttt ttatctttat
    11041 aaaactcaca aagggtaaaa aaactttctc ttggcatagg agcataatca agcgatccgc
    11101 taggacacac actaatacat cctccacaac ccaaacaatc cacttgagaa aattctaaat
    11161 gctttttttc atcatctttt aaaatcgcca cagtaggaca aatttcagca cattttgcac
    11221 aatgctcact gcgtctttca tggtattgac acacgctagc attatagcta atataagttt
    11281 tataaggata ttttggactt ttgctttgca aaaactctaa caatgcttca agattttcaa
    11341 aatttaaaag attataacat ccactttgtc ttgtaaaatc tttacgcaca acgcttaaat
    11401 tttcagcttt aaaaagtaaa aaatcaaaat ctatttccac ttcttcgcct tgatttttaa
    11461 ccacagcaca aagctccccc acacttccaa aaacagctaa aatttctgca ctacttaaag
    11521 caataacctt aaatccatgt tcttttaaaa actctacagt ttgagtatca ctatctgcca
    11581 aaatcaaacg attttgcact tctttgcttt gttctaaatc aagccctaaa tcataaacgc
    11641 tagcccttgc ttcataaagc gttaaaacat ttttactttg ctctaaaatt tcatcttgag
    11701 aatttttaag ataaaagtta atctcagggg cataaatttg tgctttttga tttttatcat
    11761 tgcaaattaa tgcttcttta tcatttgcct gatctaaaat ttcaatagca tcaggcaaag
    11821 ggattaaaac atcatttttt atataaacaa aatcttgcat tgtcttcctt aatctcttta
    11881 aaacatcatt ttataaattc tatgttaaaa taaccaaata ttttcttaag gcttaagatg
    11941 aacaaattta gaacttttcc acagattaac actcttattg aagatgagag tttaaaatcc
    12001 tatccttttt atatcaaagc atttttttgt aaaaaagttg tcgcaaaact aaaagaaaat
    12061 ttttcccaag atgaaatttc taaagataaa ctacttttag aaatcaaaaa agaaatcaaa
    12121 actttttacc gcaaagattt acaaagtgtg atcaatgcaa gtggagtggt tatacacaca
    12181 aaccttggca gaagtgtaat ccatgaagaa ctttatgaag cgtgtaaaga tatcatttgt
    12241 aattattcta atgtagagtt tgatttagaa aatggaaaaa ggggctctcg ctatgctttg
    12301 gtgttggaaa aacttaaaat gctttttgaa tgcgaagatg ctttagtagt caataacaac
    12361 gctgcggcag tttttttagt gcttaattct ctttgttatg ataaggaagt cataagctca
    12421 agaggagaac ttatagaaat tggcggaagt tttcgtgtgc ctgaagtgat aaaggctgca
    12481 ggtgtaaagc tttgcgaagt tggaactagc aacaaaacac acttaaaaga ctatgaacaa
    12541 gctatcagtg aaaataccgc tctaatttta aaaacccaca agtctaattt cgctcttatg
    12601 ggttttcata gtgaagcaaa tataaaagat ctacatgaac tagcaaaaga aaaagggctt
    12661 ttgagttatt atgatctagg ttctggctgg tgtgaaaatt taaatgaaaa gctgattaaa
    12721 aatgaaccta aaatcaaaaa actcgtacaa gaatgtgata ttttaagttt tagtggagat
    12781 aaactttttg gtagtgtgca agcaggcatt atacttggaa aaaaagaact catagaaaaa
    12841 cttaaacaaa atcaactttt aagaatgcta agagtggata aattaactct atctttttta
    12901 aacgaaagct taaaagctta tttgcaaaaa gattatgaaa aaattattac cttaaaactt
    12961 ttaaatgatg acttatcctt tatagaaaaa aaagctttaa gagtgcaaaa agaattaaaa
    13021 tttcaaaccc agcttaaaaa aagcaaaagt ttagtaggag gaggttctat gcctgataaa
    13081 agtttagata cttatatact gacttttcaa ggagatgctt taaaactaca aactcgattt
    13141 agaaaagaaa atatcatagg acgcattgaa aatgatgaat ttgttcttga ttttagaact
    13201 atacgagaaa acgaacttca aaaacttatt cttataatca atcaaatgga aaacttatga
    13261 aatctgttat tataggaacc gcaggacata ttgatcatgg aaaaacttca ctcattaaag
    13321 ctttaaatgg ttttgaaggc gatagtttaa aagaagaaca agaaagacaa atcaccatta
    13381 atttaagttt ttcaaatctt aaattaaaag ataaaaacat ttcttttatc gatgttccag
    13441 gacataaaga tttggttaaa actatggtaa gtggagcttt tggctttagt gtttgtttat
    13501 ttgtcgtaga tattaacgaa ggtttaaaag aacaaagttt agaacattta gaaattttaa
    13561 aaattcttga tattaaaaat atcattttag tgcttagcaa atgcgatctt tgtgaaaata
    13621 tagagcaaaa aagtgtagaa attttagaag agttaaaaaa tttagattat cccattttaa
    13681 aagtatttca caccagcata aaaaataatc aaggcataga aaaattaaaa aattatcttt
    13741 ataccataga aaacaaagaa aacgatgaag aactgatttt tcattattat atcgatagag
    13801 ttttttctct aaaaggcata ggaactgtcg ttacaggcag tcttaatgaa ggaagcatca
    13861 ctttaaatga aaaaatcatc tgtttagata ctcaaaaaga actcattgtt aaaaatatac
    13921 aaaaccacga tactaattta gagcaaatca aagcttgtaa ccgtgtggct ttaagtttaa
    13981 attgtgatta taaagagtta aaaaaaggtt atttgctaag caaaaaaggt tattttaaag
    14041 cctttaaaga atgcgatgct ttagttaaag caaaaaattt acaaaatagc aaaatgattt
    14101 tttgcgtggg ttcaagacaa atagaatgca aaataaatat attaaaaaaa ctagaaaatg
    14161 atgaattttt tgtgcatttt agttttg
//
LOCUS       DARBBO010000038        14007 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.038, whole genome shotgun sequence.
ACCESSION   DARBBO010000038 DARBBO010000000
VERSION     DARBBO010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14007)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14007)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14007
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.038"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(20..1243)
                     /locus_tag="SB854_000913"
     CDS             complement(20..1243)
                     /locus_tag="SB854_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG0956923.1"
                     /translation="MQNNIMTNLPQGWKMETLGEILSSDKYSIKRGPFGSALKKSFFV
                     EKGIRIFEQYNPINNDPHWKRYFISHEKFQELEAFKATEGDLLISCSGTLGKIVELPK
                     DTEMGIINQALLKIRLNNIKILNSYFIYYFNSPIMQEKILESTLGSTIKNIASVKILK
                     QIEIPLPPLKKQERIVGILDESFAKIDESIKILEQNLLNLDELMQSALQKAFNPLKDN
                     AKENYKLPQSWEWKSLEEISENISAGGDKPKNCTESKTAKNQIPVYANGVNNNGLVGY
                     TDKATIIKPSLTISARGTIGFVCIRKEPYFPIVRLISLIPCENILCLHYLYFCLNFFI
                     AKGEGSSIPQLTIPKFKSLQIPLPPLKEQEQIAKHLDFVFEKTKALKELYTKELKDYE
                     ELKQSLLNKAFKGKL"
     gene            complement(1233..1889)
                     /locus_tag="SB854_000914"
     CDS             complement(1233..1889)
                     /locus_tag="SB854_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RloB domain-containing protein"
                     /protein_id="HEG0956924.1"
                     /translation="MGTDDLRKKRKTKIRDRKTRKNEYEAILIVCEGEKTEINYLKQL
                     KNFFRLNNITIDIIPSENSSPLQVVKFAKKKNDLFDYNEVYCVFDKDTHANFIKAQKE
                     CEKYIKEYIKEDKNFKFEAIISNPCFEFWILLHFTCTTKPFGTNSPCNELINKDLKKY
                     IKDYKKDYNFTNIIKQNLSTAITNARKANKEAEKNNYESSYTFMDKLAIKFQELNNAK
                     "
     gene            complement(1879..3183)
                     /locus_tag="SB854_000915"
     CDS             complement(1879..3183)
                     /locus_tag="SB854_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002875309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0956925.1"
                     /translation="MLIEFRVENFLSIQDEQVLSMVASSDNTFLNSHISNYGKLKLLK
                     SSVLYGANASGKSNIIKALKTMKTIVISSAKKQRGDKLPIIPFLLGDEDNKPTKFEII
                     FIQNDTKYQYGFILNSEKILEEWLLVFGESNRAQKWFERIYNEKEEKYNYSFGAKFLG
                     SKQLWAENTRDNALFLSVAIQLNNEQLKPVFDFFNLKLQIANSQGWDNGINITINEYE
                     KNKELINNFFKIADLDIEGVEIKTSDIDENSLPPDIQILPQEIKEKIIKEVKNIRELK
                     NAKILEDISFMHLSQNNQIKFLNFKDESDGTQKFFNLIGIWIKSLKRGNILIIDELNT
                     HLHPLMTKFLVNLFHNENLNKSNAQLIFTTHDTSILNQDVFRRDQIWFCEKQNKATKL
                     YPLSDFKVRKDKTNLENDYLLGRFGALPYFKEILSFWSDNGN"
     gene            complement(3262..5571)
                     /locus_tag="SB854_000916"
     CDS             complement(3262..5571)
                     /locus_tag="SB854_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002895942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEG0956926.1"
                     /translation="MQNLYSEDDTRVKLIDTKLYASSWKEENIIRNYYFTDGRKLIGN
                     KRAERKFADYLLKFQNNNLAIIEAKKQNKDALDGLSQGIEYAKTLNVPFVYSTNGDKI
                     YEYDLRVSRGEYIENFPSPNELFQRVYGNLKEWQYKLLTQRELYIPQKTLRYYQKIAV
                     DKVIEALINGKDRILLTLATGTGKTTIAFALCYRLLEARWNKENKDQKPKILFLCDRV
                     SLRDQALGEFNAVESDCKVISAEEIRKNDGKIITNANVFFGIYQSLAANSKDQENTQE
                     EQESKFYLQYPKDFFDLIIIDECHRGGANEEGSWRAVLEYFSYATQLGLTATPKKEEN
                     IDTYEYFGESVYDYSLKSGIEDGFLTPYKVKLIKTTLSDGYTYNPDDLIQGELEKGFY
                     KQSEFERNIFLPNYNDFIAKKILELINPMDKTIIFCANQAHANEVKRAIDKYKSVKRD
                     DYCVRVTSDEGKIGLDYLKLFQDNDKSYPVILTSSKMLTTGVDAKNVRNIVLLANIGS
                     MVEFKQIIGRGTRVYEGKDFFTILDFVGATKLFYDPKWDGEKIEELKEQDEKEKITKE
                     HIKQTKEESKEKKSVTIHLKGTKLKVLDITTTYVGAQGKPLSTKEFLEFLIGKLDEYY
                     DDEAKLREIWSDQKNRERFLKALANDGVDEDALKDLREIFQKDCDIYDVLAHLSFNSQ
                     IKTRQERVLQVENGEFLKRFQKEKAIKFIEFLLNRYQEYGIKDFDDGLKPLIELSSLG
                     NVRELADEFGGLEILKQSFDDLQREIYAI"
     gene            5707..6786
                     /locus_tag="SB854_000917"
     CDS             5707..6786
                     /locus_tag="SB854_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEG0956927.1"
                     /translation="MDSKIFLENGRIQSKGYAMLSKDAKFTPFEFTRHAIGDNDILIK
                     ILYAGICHSDIHTARSEWGEAVYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVN
                     SCGECEACKKSQEQFCEKGQTIYTYNSCDIFHDNENTYGGYSNNIVVSEKFAVCVPKN
                     APMEKVAPLLCAGITTYSPLKFSNIKAGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFA
                     RNENKKADALAMGVSSFYTSTDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAI
                     VGLPPVEDKVNIGINELVHKAGKKVYGSLIGGIAETQEMLDFSLKHEIYPETELITPQ
                     EIDKAYENLTSGKAKFRYVIDMTKE"
     gene            complement(6788..7236)
                     /locus_tag="SB854_000918"
                     /pseudo
     CDS             complement(6788..7236)
                     /locus_tag="SB854_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
     gene            complement(7224..7571)
                     /locus_tag="SB854_000919"
     CDS             complement(7224..7571)
                     /locus_tag="SB854_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEG0956928.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIMRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMSK
                     WGKKDKKGKKCLN"
     gene            7671..8249
                     /locus_tag="SB854_000920"
     CDS             7671..8249
                     /locus_tag="SB854_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEG0956929.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEIQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            8282..9178
                     /locus_tag="SB854_000921"
     CDS             8282..9178
                     /locus_tag="SB854_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEG0956930.1"
                     /translation="MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISVLMFSWVLFDVKSYEIFHFKFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(9175..10140)
                     /locus_tag="SB854_000922"
     CDS             complement(9175..10140)
                     /locus_tag="SB854_000922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HEG0956931.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKNGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(10121..10861)
                     /gene="pxpB"
                     /locus_tag="SB854_000923"
     CDS             complement(10121..10861)
                     /gene="pxpB"
                     /locus_tag="SB854_000923"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HEG0956932.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSTYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLTEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFEIQEQVAKKVYQKEIYEYKNH"
     gene            complement(10871..11638)
                     /locus_tag="SB854_000924"
     CDS             complement(10871..11638)
                     /locus_tag="SB854_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HEG0956933.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLGNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            complement(11780..12589)
                     /locus_tag="SB854_000925"
     CDS             complement(11780..12589)
                     /locus_tag="SB854_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEG0956934.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYKKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            12668..13354
                     /locus_tag="SB854_000926"
     CDS             12668..13354
                     /locus_tag="SB854_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0956935.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFEFKLKRFIKLIVDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            13356..>14007
                     /locus_tag="SB854_000927"
     CDS             13356..>14007
                     /locus_tag="SB854_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0956936.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKPNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESLLSKHPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFL
                     DKNTTLLFKKTILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVF"
BASE COUNT         4419 a         2261 c         1961 g         5366 t
ORIGIN      
        1 tttggcaaat tttttaacat tataattttc ccttaaaagc tttattaagc aaggattgct
       61 taagctcttc ataatctttt agttctttag tgtaaagctc ttttaaagcc tttgtctttt
      121 caaagacaaa atctaaatgc tttgcgattt gctcttgctc tttgagtggg ggtaagggga
      181 tttgtaggga tttaaatttt ggtatagtaa gttgcggaat actagaacct tcaccttttg
      241 ctataaaaaa attcaaacaa aaatataaat aatgtaagca taatatattt tcacaaggaa
      301 ttaaagaaat aagccttaca ataggaaaat aaggttcttt tctaatgcaa acaaaaccta
      361 ttgttcctct agcagatata gttaaagaag gttttataat ggtagcttta tctgtatatc
      421 caactaaacc attattattt acaccatttg cataaacagg gatttgattt ttggcagttt
      481 tactttctgt gcagtttttt ggcttatctc cacccgcaga aatattttcg ctaatctctt
      541 ctaagctttt ccattcccaa gattgtggga gtttatagtt ttctttagca ttgtctttta
      601 atggattgaa agctttttgc aaggcgcttt gcattaactc atctaaattt agcaaattct
      661 gttctaagat ttttatactc tcatctatct ttgcaaaact ctcatctaaa attcccacta
      721 tcctttcttg ctttttgagc ggcggtaacg gaatttcgat ttgtttaaga atttttacac
      781 tagctatatt tttgattgtt gaacctaagg tggattctaa aattttctct tgcattattg
      841 gagaattaaa ataataaata aaatagctat ttaagatttt tatattatta agccttattt
      901 ttaaaagtgc ttgatttata atccccattt ctgtatcttt gggtaattct actatttttc
      961 ccaaagttcc agaacagcta attagtaggt cgccttctgt tgccttaaac gcttctaatt
     1021 cttgaaattt ttcatgcgaa ataaaatatc ttttccaatg tggatcattg tttataggat
     1081 tatattgttc aaaaattcta ataccctttt ctacaaaaaa gctttttttt aaagcacttc
     1141 caaatggccc tctttttata gagtatttat cacttgataa tatttcacca agtgtttcca
     1201 ttttccaacc ctgcggtaaa tttgtcatta tgttattttg cattgttcaa ttcttgaaat
     1261 ttaatcgcta gtttatccat aaaagtatat gagctttcat aattattttt ttctgcttct
     1321 ttatttgcct ttcgagcatt tgtaatagct gtactaagat tttgctttat aatatttgta
     1381 aaattataat cctttttata atcttttata tattttttta aatccttatt aattaattca
     1441 ttacaagggc tatttgtacc aaatggtttt gtggtgcatg taaaatgcaa aagtatccaa
     1501 aattcaaaac aaggatttga gataattgct tcaaatttaa aattcttatc ttcttttata
     1561 tattctttta tatatttttc acattctttt tgtgccttta tgaaatttgc gtgtgtatct
     1621 ttgtcaaata cacaatacac ctcattataa tcaaatagat catttttctt tttggcaaat
     1681 ttaaccactt gtaaaggact tgagttctcg cttggaataa tatctattgt tatgttattc
     1741 aatctaaaaa aattttttaa ttgttttaga taattaatct ctgttttttc accttcgcat
     1801 actataagta tagcttcata ttcgtttttt cttgtttttc tatctcttat ttttgttttt
     1861 ctttttttgc gtaaatcatc agttcccatt atcactccaa aatgataata tttctttaaa
     1921 ataaggcaaa gctccaaaac gccctaaaag ataatcattt tctaaatttg ttttatcttt
     1981 tctcacttta aaatcactta aaggataaag tttggttgct ttattttgct tttcacaaaa
     2041 ccaaatttga tctcttctaa atacatcttg atttaaaata gaagtatcgt gagtggtaaa
     2101 aataagctga gcatttgatt tgtttaaatt ttcattgtga aaaagattta ctaaaaattt
     2161 tgtcatcaaa ggatgcaaat gagtatttag ctcatctatt attaaaatat ttcctctttt
     2221 taaagactta atccaaatgc ctattaaatt aaaaaatttt tgcgttccat ctgactcatc
     2281 tttaaaattt aaaaatttta tttgattatt ttgacttaag tgcataaaag atatatcttc
     2341 tagtattttt gcatttttta attctcggat atttttgact tctttaatga ttttttcttt
     2401 gatttcttgc ggaagaattt gaatatctgg tggtaatgaa ttttcatcaa tatcgcttgt
     2461 tttaatctct acaccttcta tatccaaatc agctatttta aaaaaattat tgatcaattc
     2521 tttatttttt tcatattcat taatcgtaat atttattcca ttatcccagc cttgcgaatt
     2581 tgctatttga agcttaaggt taaaaaaatc aaatacaggt tttaattgct cattatttaa
     2641 ttgaatagcc acagataaaa ataaagcatt atctctagtg ttttcagccc ataattgttt
     2701 agaacctaaa aatttagctc caaaagaata attatatttt tcttcttttt cattgtaaat
     2761 tctttcaaac cacttttgcg ctctattgct ttcgccaaaa actaaaagcc attcttctaa
     2821 aattttttca gaatttaaaa taaagccata ttgatacttt gtgtcatttt gtataaaaat
     2881 aatttcaaat tttgtaggtt tgttatcttc atctcctaat aaaaaaggaa ttataggtag
     2941 tttatctcct ctttgttttt ttgcactaga tataactata gttttcatag tttttaaagc
     3001 ttttataata tttgactttc cagaagcatt tgctccataa agtacactgc tttttaacaa
     3061 ttttaatttt ccataattac taatatgaga atttaaaaaa gtattatcac tacttgcaac
     3121 catacttaaa acttgctcat cttgtataga taaaaaattt tccactctaa attctattaa
     3181 catttttctt cctaaaaata tataaaattc tattttagat aattatttta acaaaaaatc
     3241 tcaaatttaa tcttaaaaat atcatatagc ataaatctcc ctttgtaaat catcaaaact
     3301 ttgttttaga atttctaagc caccaaattc atcagctaat tctcttacat tgcccaaaga
     3361 gctaagttct ataagtggtt ttaagccatc atcaaaatct tttatgccat attcttgata
     3421 tctatttagt aaaaattcta tgaattttat ggctttttct ttttgaaagc gttttaaaaa
     3481 ctcaccattt tctacttgta aaacacgctc ttgccttgtt tttatctggc tattaaagct
     3541 taaatgcgcc aaaacatcat atatatcaca atctttttga aaaatttctc ttagatcttt
     3601 taaagcatct tcatcaactc catcatttgc aagggctttt aaaaatcttt ctctattttt
     3661 ttgatcactc caaatttcac gcaattttgc ttcatcatca taatactcat caagctttcc
     3721 tatcaaaaat tctaaaaatt ctttagtgct aagtggctta ccttgtgctc ctacataagt
     3781 agttgtgata tctaaaacct taagttttgt gccttttaag tgtatggtta cgctcttttt
     3841 ttctttgctt tcttcttttg tttgttttat atgctcttta gtgatttttt ctttttcatc
     3901 ttgctctttt aattcttcta ttttttcacc atcccatttt ggatcataaa aaagtttagt
     3961 cgcaccgaca aaatcaagta tagtaaaaaa gtctttacct tcataaaccc tagtgccacg
     4021 cccgatgatt tgcttaaatt ccaccataga acctatattt gctagcaata ctatatttcg
     4081 cacatttttt gcatccactc cagttgtgag cattttagag ctagtaagta tgacaggata
     4141 gcttttatca ttatcttgaa acaattttag ataatcaagc cctattttac cttcatcact
     4201 cgtaactctt acacaataat catctctttt aacgctttta tatttatcta tagctctttt
     4261 tacttcattt gcatgagctt gatttgcaca aaaaattatg gttttatcca taggatttat
     4321 aagctctaaa attttcttag cgataaagtc attatagttt ggtaaaaaaa tatttctttc
     4381 aaattcactt tgtttataaa agcctttttc aagctcacct tgtattaaat catcaggatt
     4441 ataggtataa ccatcactca aagttgtttt tatgagtttg actttataag gggttaaaaa
     4501 tccatcttca ataccacttt taagactata atcataaaca ctttcaccaa aatactcata
     4561 agtgtctata ttttcttctt tttttggagt agcggttaaa ccaagctgag tcgcataaga
     4621 aaaatactca agtacagctc tccagcttcc ttcttcgttt gctccgcctc tgtgacactc
     4681 atcgatgatg ataaggtcaa aaaaatcttt tgggtattgt agataaaatt tgctctcttg
     4741 ttcttcttgg gtattttctt gatctttaga atttgcagct agactttgat aaattccaaa
     4801 gaaaacattt gcgttggtga tgatttttcc atcatttttt ctaatctctt ctgcgctgat
     4861 tactttacaa tcgctttcta ctgcgttaaa ttctcccaaa gcttgatctc ttaagctcac
     4921 tctatcgcat aaaaacaata ttttaggttt ttggtctttg ttttctttat tccatcttgc
     4981 ttcaagcaaa cgataacaca aagcaaaagc tatagtcgtc ttacctgtgc cggtagcaag
     5041 ggtaagtaaa attctatctt taccattgat taaagcttct atgactttat ctacggctat
     5101 tttttggtag tatcttaatg ttttttgagg tatgtataat tctctttgag ttaaaagttt
     5161 gtattgccat tcttttaaat ttccataaac tctttgaaaa agttcgttag ggcttggaaa
     5221 attttctata tactcacccc ttgaaaccct taaatcatac tcataaattt tatcgccatt
     5281 agtgctataa acaaaaggca catttaaagt tttagcgtat tctatacctt gagataagcc
     5341 atctaaggcg tctttgtttt gttttttagc ttctatgatg gcaagattgt tattttgaaa
     5401 tttgagcaaa taatctgcaa attttctttc agctcttttg ttgcctatga gtttgcgtcc
     5461 atcggtaaaa taataattcc ttatgatatt ttcttctttc caagaactag cataaagctt
     5521 tgtgtctata agtttaactc ttgtatcatc ttctgaatat aaattttgca tttttacccc
     5581 aaagtgaaat taaattttgt aattataaca tttataataa tttttttaaa aaaatttaat
     5641 ttccctcttg acttagagct actctaatgt tttataattt caaaaatcaa aaaataagga
     5701 gagaaaatgg actctaaaat ctttttagaa aatggtcgca ttcaaagcaa gggctatgct
     5761 atgcttagca aagatgcgaa attcacaccc tttgaattca cacgccacgc tattggtgat
     5821 aatgatattt tgattaaaat cctatatgca ggtatttgtc atagcgacat ccacactgca
     5881 agaagcgagt ggggagaagc tgtgtatcct tgtgtgccag ggcatgagat agcaggagaa
     5941 gtgatcgcag tgggtaaaaa tgtgagcaaa tttaaagtag gggattatgc aggggttggc
     6001 tgtatggtaa attcatgcgg agaatgcgaa gcatgcaaaa aatcccaaga gcaattttgc
     6061 gaaaaaggac aaaccatcta tacttacaat agctgcgata tttttcatga taatgaaaac
     6121 acctatggag gctactcaaa caacatagtc gtaagtgaaa aatttgctgt ttgtgtgcca
     6181 aaaaatgcac cgatggaaaa agtcgcgcct ttgctttgtg caggaattac cacttattct
     6241 ccgcttaaat tttcaaacat taaagctggc tcaagcgtag cggtagcggg atttggcgga
     6301 cttggtatga tggcggttaa atatgctgtg aaaatgggtg caaaagtaag tgtttttgct
     6361 agaaatgaaa acaaaaaagc cgatgctttg gctatgggcg tgagttcttt ttatacaagc
     6421 acagataaaa atgctgtaaa agaacgtttt gatttaatca tctcaaccat tccaacgcct
     6481 tataatcctg ctatttattt ggatttgctt aaatttggtg gcgaaatggc tatagttggc
     6541 ttaccgcctg tggaagataa ggtaaatata ggtataaacg agcttgtgca taaagcaggt
     6601 aaaaaggttt atggctcgct aattggcggt attgctgaaa ctcaagaaat gcttgatttt
     6661 tctttaaaac atgaaattta tccagaaacc gagcttatta ccccacaaga aatcgataag
     6721 gcttatgaaa atctaacctc aggaaaggct aaatttcgct atgtcattga tatgacaaaa
     6781 gaataattta atacttatca aaaaccacat cgctaatgtc aaatcccctt tgcttagcga
     6841 tgtttaaaag ctcttttata tttttttcat ctattatatt tcttgctaaa atccaaagat
     6901 attttttatc aggactaccc acaatggcaa ctttatactc gctatcaaca aaaatgattt
     6961 cataatttac tttattaaaa aggttcataa agatgttaaa tctcactgct aattgcctat
     7021 ttgaaacgat ttttgcctta ccctttatac ttgaaatttc atttttttac tgcaaaaatt
     7081 ctcaatctct acataaggaa tgccattttt gtatttaagc tcgtattttg cctttgaatt
     7141 taggcaagat ttttgaaaaa aggccggttt tctagccatt tcaagccatt ctcccatata
     7201 attttgcaaa gaaagttcgc caattaattc aagcattttt tccctttttt gtctttcttg
     7261 ccccatttgc tcatagcttg taaaatggga attaaacttt gtccacgttt ggataagcta
     7321 tattctacct tgggtggaat ttgagcgtat tcttttctga taattaaacc atcgttttct
     7381 agttctctta aggtattggt taaagtttta aaagatatgg agcttaaaaa gcgtttgagt
     7441 tcattataac gcatgatttc atagcgaaat aagcagtata aaatactcat tttatatttt
     7501 ccattaatta atgctagagt atagttaaat ccacattctt cgaaattgca cggagaattc
     7561 tctttagtca tttaacattc ctttagtata gtatattact ttattttctg tattgaaaat
     7621 gatattatgc taagttataa ttgtatcata aaatttaaaa aaggataaaa atgaaaaata
     7681 tactcttact taatggcgct aaagaatttg gaaattcaaa aggacaactt aatttgacat
     7741 tgcataatca tgctttagaa attttaaaaa cactaggata cgaggtagat caaactcaca
     7801 tagatcaagg atatgatcct aaagaagaga tacaaaaatt tataaaagct gatgctgtga
     7861 tctatcaaat gccagcttgg tggatggggg agccttggat agttaaaaaa tatatcgatg
     7921 aagtgtttgg tttgggtgct ggagtgcttt ttaaaaatga tggaagaact catgaaaatc
     7981 ctagtaaaaa ctacggaaaa ggtggtttag atcatggtaa aaaatacatg ttttctctca
     8041 cttggaatgc acctcttgaa gcctttaatg ataaaaatga attttttgaa ggaaagggtg
     8101 tagatatggt gtattggcat ttgcataagg ctcatgaatt tataggtatg aaagctttac
     8161 caacttttat gtgtaatgat gtggtaaaaa atcctcaagt ggaaaaatat ctaaacgagt
     8221 atgaactaca cttgaaaaaa attttttaaa aaatttgact taaaaatttc aaggtgtaac
     8281 attgactcga acaaagtatt tgtatatctt gcttgttatt gctatgtttt tatggggctc
     8341 atcttggcca acatctaaga ttttagcaaa ttatacggat acttctatta ttaccttttg
     8401 gcgttttttc tttgttgtat tgggttcatt ttttgtttta aacttcttaa aaattcctct
     8461 taaaatcgaa aaaactgcct taaaatgggt attgatagca ggagttttaa atgggcttta
     8521 tgcctttgta ttttttatcg ctataaagca cggcttggca ggcaaaggag gagttttagt
     8581 aaccactatg attcctattt tttcttattt gatatttatg atagcgatat tttttcaaaa
     8641 aaacaaaaaa tcaactcaca agatcacaaa gagtgaaatt ctaggcttat ttttaggttt
     8701 attatctgga ttttgtttgc taaatttagg gagtttagaa gatttatttg gtaaatttaa
     8761 tattttattt ttaacttgtt cttttatttg ggctttgatg gcagtgttta atcataaagc
     8821 caaaggagct caccctttgg cgattaactt ttatattaat ctcatttctg ttttaatgtt
     8881 ttcttgggta ttgtttgatg taaaaagtta tgaaattttt cattttaaat ttaaattttg
     8941 gatcagtatg tttgtcgtgg cttttttatc aactattata ggaactagta tttattatta
     9001 cgggattcac attttaggaa gcgttaaggc aaattctttt gttttaatca ctcctgctag
     9061 tgctttaatt tgcagttatt ttatactaga cgaggtgcca aatgcactta ccttgttagg
     9121 ttgtgcctta gctataggtg ctatatattt tatcaatatt tatggtaaaa aagcttagat
     9181 taaattttca aaatcaagat tgattttttg atccatagct ttaaatttca tttctctttg
     9241 tttataaagt tctaaggctt cttgcatgct aatgctttga aatttaaagc tagaacctaa
     9301 cttagcttgt gcgagtaagc ttagatcatt ttctataacc gtggctattt ttgtatagcc
     9361 tcctgtgctt tgtcttcctg ccattaaaat gataggaata ccattttttg gcacttgtat
     9421 acttccaaaa accgcaggat ctgagatgat atctgctgag tttttatgct ctatactttc
     9481 actagattct gcataaattg ccattctatc gctttttaaa cctactttat aagtagtatt
     9541 taaaaaggtt tctatgcctt tttgggtaaa agcatcttca tttgttccta aaataacgcg
     9601 tataataggc tctttagggc ttttaaaaag aggattttca cattctctag cttctaaatt
     9661 aaaaggtata aaagtattat gagtatttaa aatatcatct ttttgcaaag ctcttccttc
     9721 aaaaactcca gctcccattt tagcatcact ggatttagag tttaaaaaac tttttacttc
     9781 aaagccaccc gctacgcata aatacccacg aaaacctatt tttgctaaat caagttctaa
     9841 aatatcgcct ttatttgctt gatatacttt gcaagttttg attttttgat tatcaagctt
     9901 tgcctcaaat tcagctccac ttaaaacaaa ataattctca tctaaaaatt cgtattttcc
     9961 accctttaaa caaagctcaa ttcctgcttc atcttgtttg tttccaagca agatatttgc
    10021 cattcttaaa gcatcttcat ccatagctcc acttcttgct atgccaaatt tagcaaattt
    10081 ttttctacca aagtcttgca aacttgaatt tatagatgct tcaatgattt ttatactcat
    10141 aaatttcctt ttgatagact tttttagcaa cttgctcttg gatctcaaaa aattcatctt
    10201 ttgaaatggc tttaaatttt aaaaacatac ccgcttttaa aagagtggga tttttttcat
    10261 cttctttatc aaaaaattcc aaaggtgttc tagcaatgat ttgccaaccc cctggacttg
    10321 atatgggata aactcctgtt tgtttatcgg ctatacctac acttccagct tctatttttg
    10381 ctctagggct tgaaaggcgt ggggtaaaaa gtctttcatc taaacctcca agataaggaa
    10441 aacctgccat aaaacctagc ataaaaacaa gataataagg tttagtgtga agagatataa
    10501 gctcttcttt tgaaatttga ttgtgtttgc acacaaattc taaatccagc ccaaattctt
    10561 catcataaca aagtggaact tctatacaaa gacttgagtt ttgctccgta agtttgatat
    10621 cctttttaat tttttccaaa aaatcaagca aagaatttaa agaaagcacg caaggattaa
    10681 agtatatcaa caaacttgca taagtactta ccaactcatc aataccataa atttcacctt
    10741 cttttagggc tttttgtatc ctttgttctg tgcttaaaac ataggcattg atttgaggtg
    10801 aaatttcttg ctcaaaacgc aaaagcaaag ctttacttcc actaaaatgc acactaaaca
    10861 ttgctaaaac ttatataaaa ttttccaaag cacaaatttg aatttgctct ttttttaaat
    10921 tttctttgat ttttttaaca aattctaaag cttttgcatt atccccatga acacaaatac
    10981 tatcggcttt taaatcaatt tctttgccat ttatgcttgt aactttgctt tcttttatca
    11041 tttttatcac gcgtttgata gctaaatttt catcgtgtat taacgcccct tctaattttc
    11101 ttgaaactaa agtgccatca tcattatagg cacgatctgc aaaaacttca ttagcatatc
    11161 ttaaaccctt tttcttagct gcttcattca tagcagaatt accaagccct agaaaaataa
    11221 tattttcatc aaaactcgcc actgcctcac aaagtgctaa ggctaaattt tcatcaatag
    11281 ctgccatatt ataaagcgcc ccatgggctt taaaatgctg tattttcata ccttttgcct
    11341 tagcaaagcc aaataaagct cctagttgat acaaggcata gtttttagcc tcttcaaagc
    11401 ttatttgcat attgcgtctt ccaaaaccca aaagatcagg ataagatgga tgtgctccta
    11461 tgcaaacacc attttgcttg gctaaattta aggtttcatc catcacacaa ggatcacccg
    11521 catgaaagcc acaagcgaca tttactgaac ttacaaattt taaaatttct tcatccattc
    11581 ccattttata ggcgccaaaa ctttccccta aatcactatt taaatccact ttgaacatta
    11641 tttgaccttg tatatttaat tattgatttt attatatcta aagaagaatt ttaaataagc
    11701 taaaagtttt gaaaaataaa taaaaaagtt acaataagta aaaaatgata ttttaagcag
    11761 gttaaaacct gcttaatttt tagtcttttc ttgtttttgc atcaattaca aataaaggtt
    11821 tattaagaag tttaaaatca gcaatgaaat ttaaagtctt atcacttgtt acccatttga
    11881 taaatttact agcttctgta taatttacat ttttacaatg cttaggattt gtcgctataa
    11941 cagaataaaa atttttaaga ctatcatcgc cttcatttac aatgactaag tttggtttgc
    12001 ctttttcatt ggcttcatat ttgatataag taccacgatc ggttaaaatc acaccttttt
    12061 tttcttcagc gattttaatg cttgctaaca taccttgtcc gctttgttga taccagcttt
    12121 gcttttcagg aacaccgcca agatttttcc aaaggctttt ttctttattg tcagtgcctg
    12181 atttatcgcc tcttgagatg aaagtaagct tttcattttt gataagttct aagctttctt
    12241 ttaaattttt acctttaaat ttagaagcta aagatttatc tgcgatgatg ataaaatcat
    12301 tatacatcac aggagttcta tctacaccaa agcctttttt cataaattct ttttcagcct
    12361 ttggagaatg cacaaaaagc acatcagcat tgcaatcttc acccattttt aaagccgcac
    12421 ctgttcctac ggcaacccat tttaaggtat tgccactttc ttttttataa agaggtttta
    12481 gagcatctaa aagtcctgta ttgtcagtgc ttgttgtagt tgccatttta agttctgctg
    12541 cacttgcact taaagctaaa gcaagggcta aagaaatgat ttttttcatt ttttttcctt
    12601 ataaatttac ataaaaaaat attttagcat aattatgcta aaattactta ttttaaaaag
    12661 gatatttttg gattatattt ttgatggttt taaacaggct ttatttttac ttttcaatgc
    12721 tgatgaaagc gtaatttcag ctataaaaac tacactttta agctcaagta tttctatagt
    12781 tttagctttg cttataggtt ttcctttggg atttatctta ggtttttttg aatttaaatt
    12841 gaagcgtttt ataaaactta tagttgatac tagcctttct tttccaacag ttgcagtagg
    12901 acttatactt tatgcactga tttcaagtcg aggacctttg ggagaatttg gattgctttt
    12961 tactataaag gctttaattt tagggcagtt tatcttagcg cttcctatag tgatcgcact
    13021 tttttcaaat ttgatagaaa atatgaataa aaaacatttt ttacttataa aatcttttca
    13081 cctaagtcct ttaaaacttg ttttaacgat gatttatgaa ttacgctttg ctttgattag
    13141 cgtcgttgca ctagcttatg gacgcattgt agcagaagta ggagtagcga tgatagtagg
    13201 tggaaatatc aaatacgata ctagaaccat aaccacagct atttctcttg aaacaaacaa
    13261 aggcgaattt gctagcggta tagctttggc tttggtttta attctcattg ccttttgttt
    13321 aaatttcatc acgcacaaac tcaaaagaac ataaaatgat agaaatttct aatctttttt
    13381 tcaactatca aaacaaagaa gttttaaaaa tcaaaaattt aaaacttgat acaagtaaaa
    13441 ttagcatctt aatgggagcg aatggaagtg gaaaatctac atttttaaga atattaaaat
    13501 ttttagaagg agatttttca aaaaatattt cttattttgg aaattttaaa cctaataata
    13561 agcaaaagcg tgaaatttat ttgctttttc cagagcctat tttgttaaat cgtagtgtaa
    13621 gggcaaattt tttatttacc ttaaaaactt acgggattaa agaagatatt gaagaacgca
    13681 taaaagaaag tttgatgttt ttaaatttag atgaaagtct tttaagtaaa catcctaatg
    13741 aactttcatc aggacaaagt caaaaaatag cttttgctat agctttaagc gtaagagcga
    13801 agtattattt acttgatgaa ccaagtgctt ttttggataa aaatactaca cttttattta
    13861 aaaaaactat tcttaaaatg catgaaaatt tcaatacagg ttttttaatc gcaagtcatg
    13921 ataaacattt tttagattct ttggcgcaaa aaaaacttta tttgcacagt ggagaaattt
    13981 tagaatttga aaatactaat gtttttg
//
LOCUS       DARBBO010000039        13897 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.039, whole genome shotgun sequence.
ACCESSION   DARBBO010000039 DARBBO010000000
VERSION     DARBBO010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13897
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.039"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(96..1343)
                     /locus_tag="SB854_000928"
     CDS             complement(96..1343)
                     /locus_tag="SB854_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEG0956937.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVEEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLSKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFEQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIAPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGAGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYELLSKDEIYT
                     KYYLRVKVEDKIGVLSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            complement(1347..2549)
                     /locus_tag="SB854_000929"
     CDS             complement(1347..2549)
                     /locus_tag="SB854_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HEG0956938.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPN
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQATR
                     NIKKYLKE"
     gene            complement(2561..3367)
                     /locus_tag="SB854_000930"
     CDS             complement(2561..3367)
                     /locus_tag="SB854_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956939.1"
                     /translation="MVKKIIILTLWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLRLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYINNIKRIGAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            complement(3361..4299)
                     /locus_tag="SB854_000931"
     CDS             complement(3361..4299)
                     /locus_tag="SB854_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956940.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSSNAWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLGGNNVVVIDNNK
                     AQETNQTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTPKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPAGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            complement(4292..4975)
                     /gene="rlmB"
                     /locus_tag="SB854_000932"
     CDS             complement(4292..4975)
                     /gene="rlmB"
                     /locus_tag="SB854_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEG0956941.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKINNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            complement(4989..5813)
                     /gene="rsmI"
                     /locus_tag="SB854_000933"
     CDS             complement(4989..5813)
                     /gene="rsmI"
                     /locus_tag="SB854_000933"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEG0956942.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELSLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            complement(5816..6016)
                     /gene="rpmE"
                     /locus_tag="SB854_000934"
     CDS             complement(5816..6016)
                     /gene="rpmE"
                     /locus_tag="SB854_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HEG0956943.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(6095..6751)
                     /locus_tag="SB854_000935"
     CDS             complement(6095..6751)
                     /locus_tag="SB854_000935"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEG0956944.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFVQKFPNAIMVD
                     FQGEQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            complement(6753..7160)
                     /locus_tag="SB854_000936"
     CDS             complement(6753..7160)
                     /locus_tag="SB854_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956945.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(7160..7585)
                     /locus_tag="SB854_000937"
     CDS             complement(7160..7585)
                     /locus_tag="SB854_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HEG0956946.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSNDEHEVNPSIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLSNKIFIQKIKTIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(7585..8166)
                     /locus_tag="SB854_000938"
     CDS             complement(7585..8166)
                     /locus_tag="SB854_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEG0956947.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMVNGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(8163..8906)
                     /locus_tag="SB854_000939"
     CDS             complement(8163..8906)
                     /locus_tag="SB854_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEG0956948.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKKDFDPIVVITGGEPLIHYENP
                     EFIEFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(8909..9871)
                     /gene="moaA"
                     /locus_tag="SB854_000940"
     CDS             complement(8909..9871)
                     /gene="moaA"
                     /locus_tag="SB854_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEG0956949.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(9884..10399)
                     /locus_tag="SB854_000941"
     CDS             complement(9884..10399)
                     /locus_tag="SB854_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956950.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(10396..10893)
                     /locus_tag="SB854_000942"
     CDS             complement(10396..10893)
                     /locus_tag="SB854_000942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956951.1"
                     /translation="MELALFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(10884..11768)
                     /locus_tag="SB854_000943"
     CDS             complement(10884..11768)
                     /locus_tag="SB854_000943"
                     /EC_number="2.5.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxybenzoate polyprenyltransferase"
                     /protein_id="HEG0956952.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVSARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLLVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGEIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKIGLHSIPAKFGSKATLFISSF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHKIVHKNFAHIDRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            11839..12708
                     /gene="miaA"
                     /locus_tag="SB854_000944"
     CDS             11839..12708
                     /gene="miaA"
                     /locus_tag="SB854_000944"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEG0956953.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFNAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYALLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELAWDKEILKKRIKTRTKEMLDNGLLDEAKILFSKFD
                     HKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALATLRMKFSIEK"
     gene            complement(12694..13257)
                     /locus_tag="SB854_000945"
     CDS             complement(12694..13257)
                     /locus_tag="SB854_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HEG0956954.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNVNLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
     gene            13405..13479
                     /locus_tag="SB854_000946"
     tRNA            13405..13479
                     /locus_tag="SB854_000946"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:13438..13440,aa:Glu,seq:ttc)
     gene            complement(13615..13797)
                     /locus_tag="SB854_000947"
     CDS             complement(13615..13797)
                     /locus_tag="SB854_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956955.1"
                     /translation="MKKVVLISALLGAFAANVFAANTPSDVNQTHTKAHHSKAKADKK
                     HEAKTHKKTKEQTPAQ"
BASE COUNT         4732 a         2200 c         1742 g         5223 t
ORIGIN      
        1 gaaatttctt tttaaaattt caaagccttg tttttttaaa aatttacaag ccttatcttc
       61 ccctaaaatt ccatctaaat aagcttttac acccattatt ctatacgcat cataaaaggc
      121 ttggttttta taaaatcttg tttgcgtaaa atttcaagca aattttgtat gcttttttca
      181 taagttaaat gcgtagtaaa aaacaaagta ctgtaatttt catcattttt tttaggtttt
      241 tgtaaaaaac tatcgataga aatattattt tcactcatca attgtgtgat tttagataaa
      301 acccctattt tatcttcaac tttcactctt aaataatatt ttgtataaat ttcatctttg
      361 cttaaaagct cgtattctaa agtattcaca aaaccaagca ttggtgcttt tacctgatct
      421 cttgctatat ccataagatc tgaaatcaca gcacttgcag tggcctctcc tcctgctcct
      481 gctccataat acaaactttc acccaacaaa tctccattaa tgcttatagc attcatcact
      541 ccatcaactt ttgcaagcat tttttcttta tctatcatag taggatgcac tcttaattct
      601 actttatttt cacgcacctt agctatacct aaaagtttta tggtaaattc aaactcatta
      661 gcaaaataca tatcttcagg tgcaatttca ctaataccct cgatcaaaat atcttcaggt
      721 ttagctttaa gattataagc gatacttgat aaaacaagca gtttatgtgc cgcatcttgt
      781 ccttctatgt caaaagttgg atcagcctct gcataaccta aattttgagc tatttgtaag
      841 gcttgttcaa aactcatatt tttttgactc atagaactta aaatataatt actcgtgcca
      901 tttaaaatcc cttttatagc caaaatatta tttgcactta aaccttcttt taaaaccttg
      961 ataataggaa ttcctccagc tacacttgct tcataaccaa aggctaaatt tttagacaaa
     1021 ttttcaagtt cataacgatg ataagcaagc atagctttat ttgcagtaac aacagctttt
     1081 ttctttttta aaatttcact cactatttta aaagcttcat ccactccacc cattaactcc
     1141 acaaaaacat ctacatcagc atttaaaatt tcttcaacac tgtgagtaat tggaattaaa
     1201 gcattttttt taggacttct agcaagagcg atcacaggag ttatgctttg accgcacctt
     1261 gcacgaatga gtttatcatt ttctaaaaga aatttaacca ccgcacttcc aacagtgcca
     1321 taaccaagaa tcgctacttt cataacttac tcttttagat attttttgat attgcgtgta
     1381 gcttggcgta tgcgattttc attttcaatt aaagcaattc ttacatactc atcacctgct
     1441 tcgccaaaac ctaccccagg acttactgca acactagcgc gttgtaaaag ttgctttgaa
     1501 aattctaaac tttttaaatg tcttttgctt tcagggagtt ttgcccaaac aaacatactt
     1561 gctcttggtt tttgaagttt ccagcctgca ttttcaaaag cttcaagtaa aatgtgcatt
     1621 cttttatcat aagttgcacg gatttcatct acacaagttt gatctccatc taaagctatg
     1681 gtagctgcta cttgaatagg tgtgtacata ccataatcaa accaagattt tattttttta
     1741 agcgcactga ctaagcgttt atttcctact acaaaaccca cacgccagcc tgccatattg
     1801 taagattttg aaagagtgta agtttctacc gctacatctt ttgcaccttc aatttccaaa
     1861 atagaaggag ttttatagtc atcataagtt aaatctgcat aagcaatatc tgaaataata
     1921 taaaatcttt ctttttttgc cgttgctatc aatctttcat aaaaactttt ctcacaagtt
     1981 actgttgttg gattatgcgg gaaattaaca acgacatatt ttggacgcgg gatgctttca
     2041 tttaaagttt tatgcaaatt ttcaaaaaat tgattttcat caagctcaaa tttttcatta
     2101 taagctaaag gcatttttgc tacattacct cctgctataa taaaagcttg agtatgtata
     2161 ggataagcag gagttggcac aatagcaaca tctccaggat ttataatcgc tcttgcaaga
     2221 tttacaaaac cctcttttga acccatggta gctacaactt cattttcagg atctagatta
     2281 acattatatt ttcttttata ccaattacaa attgctaagc gaagtttata aatccccatg
     2341 gatgtagaat atcccgaggt tttatctttg ttagcacttt cacaaagttt atctataatg
     2401 tgttgtggag ttttaccatt gggatttccc attgaaaagt cgatgatatc ctctccagca
     2461 cgtcttgctg ccatttttat cgcatttact tctgcgaaaa cataatttgg aagtctttct
     2521 atggtattaa aacggatttc atcaaacatt tcttaatcct ttatttttta agtgtgattt
     2581 ttaaacccct gcgtatatta tctaaactat acatatcgct tacaatagca tatatagcac
     2641 catttggaat aagttctgaa aaatgattat ttttattttc gctttttact gctttaatta
     2701 gattgagatt tttatctaaa aagaagattt taggaaacca attatctaaa tcatttgcat
     2761 caataatcaa atttgtagca ttttttaaat caagcacata gtctttaagg ggcttttcta
     2821 atgattttgg agtatttaaa ttaacatttg tattggtttt taatacagca ttggaaaaat
     2881 ttaaatcata ttcatagtca tatgccccaa tacgcttaat attatttata tagacagaat
     2941 tttcttttaa gagattgtaa agcgttccag gatctaaaac atattgagat tctacttgta
     3001 tggtatagtc aatatttcct tctcttaaaa tcaaatctgt agggataaaa tatatatatc
     3061 cagcatctgt taaaacatcg gataaaattt taaaaaacat aacttcatca gcttttgctt
     3121 taaaatttag tcttagactt tgaggatttg atagtgttaa ggcaattaaa gaattggttt
     3181 ttaatatttg agatattttt gcaatatcac aatttccatt attatctatg taagaattat
     3241 ttgaaaataa taattctagt tgagaatttt tactaggatt gtttactaaa ttttttgcta
     3301 attcaagact tgagattgca aaagatatat taacccaaag agtaagaata ataatttttt
     3361 ttaccattct ttacctttat ttaattttac aaattcagca gctgaaatac ttgtaatttt
     3421 tccatcttta atcaagaaac gttttgaaat tcctgcagga aatttttgtt ctttattttc
     3481 ttgatcaaac attgttaaag ctgcagcccc tgttaaaatt aactgatctt tatctaaaga
     3541 aatattaaaa tctttttctt taacaaagct tgttttttta agacttttta aatctattaa
     3601 acctatccaa atcttggtag aggttttaaa atgtgcttct tttaaagaat cagtttttgg
     3661 tgtatttgtg tcttcttgga tttgggtatt tttttcttca tcgagtagag ttgtgttatt
     3721 ttcactgata ttattttcta tgcttatgtt tttatcattt tcttgtaatg agatattttg
     3781 gcttggtaaa acgctctctg tttgatttgt ttcttgtgct ttattgttgt ctataacaac
     3841 aacattgttt ccacctaaag attttaaatt ttcttgtgct tgtcctatga tatctataac
     3901 tgttgcgcta gtattatttt gttcatcttt gaaaaaagtt ttaagtgtat caaaataata
     3961 aattccactt cctataatca ctaaaacaat aagaacaatc aaaaaaggcc aagcgttaga
     4021 ggatttttga ctataagcat ctagttttgg ggttatcatt tttgattttg tttgtggagt
     4081 aggattgttt tcgttaagat aagcttcata ctcttcgtta aaatcactaa agtcgagttc
     4141 gtattctctg ctcaaaattt taacaaaacc tttaacatta aaacgactta aaacagcaaa
     4201 attcttttct actaaagctt caagaaaatc aagttcaatt tgcgtttttg ctgcaacttc
     4261 ttttaaattt aattcttgta tttttttcca attaagcatt taacatccta tcacaaagta
     4321 ttgcaaaagc agcgctgaca ttaagactat caaaattatt tttcatcgca atgcccacac
     4381 attcatcgca tttttttaca attttagagc ttaaaccaaa accctcacta cccaaaacta
     4441 aaactttttt accattgttt atttttacac tgtgaatttc ttttcccgag ccatcacttg
     4501 cataaaaata aaaacctact tgttttagtt catttattac acttaaagca tcgttgctta
     4561 tcacaatagg taaatcaaga gccgctccgc tgcttgtgcg aattactcct tccatggcta
     4621 atttttcacc aataaaaatt aaagccccaa cccctaaagc ataagctgta cgcgtgatag
     4681 cccctatatt tcctacatca ctaattccat aaagcataac aataaaatca ttttttttga
     4741 tctcatttaa atttgcaaaa gaactttctt taatatctag caaaaaacct tgatgatttc
     4801 cacctttcgc ataagcttga gcagttttaa aatcaagttt tttgatttta aaacctgatt
     4861 ttgcgatttt ggaaaaagta attttatcac attcttttgc taaataaagc tcattgatac
     4921 agtctttatg atattctaaa atataaaaaa atatttgctt cccataaact atcatattaa
     4981 aattttacct aatcttgact taaaagcagt ttttgataaa tttcttttgc attttttcca
     5041 ttgatctttg ataataattt tgcttttgct tttaaagaca gctctaaatc cataatatct
     5101 ttttcacaaa gagtattttg caaaaaattt tgctcttttg attgcagtac tacaacccat
     5161 tcaccgttta aattagactt ttttaaaatt tcagaaagct ctttagcatt gcctttaaat
     5221 tttttttcaa attttttact gatttcttta atcaaaaaaa tttctctttg gctgtctaga
     5281 atcataatct gttctactaa agataaaata cgcttggggg attcgtaaat aatacttgga
     5341 taaggaaagt ttaaaatttt ttctatatct ttttgtcttt ctttgccttt atttgctaaa
     5401 aaaccaataa agataaattc tttttgacaa aatgctgagc ttacaagagc aactaaggct
     5461 gcatttgcac ctggtaaaat ttcataggtg atattatttt cttgtgcaaa ttctaccaaa
     5521 gccttgccag gatcactaat ccctggcatt cctgcatcgc ttaaataagc tacatttttt
     5581 tcaaatatct ttaaatcaat acttgctaaa acttcttttt cattatggga gtgtaaggct
     5641 ataaatttag aaatatgtat atcagtgtga aatttggtat ttaataacga aatcaaagac
     5701 ttacttactc ttgtatcttc gcaaaacaca agatcgcaag tctttaaaag ttctaaggct
     5761 ctaaaagaaa tatcgcttaa atttcctatg ggagtaggaa taaaataaag cataattatt
     5821 gcattgcgta ttttttctta aatttctcta cacgacctgc agcatctaca attttttcac
     5881 tgcctgtaaa aaaaggatgg caatttgaac aaatatctac tcttaattct gctttgtttg
     5941 actttgttgt aaaagtattt ccacaagcac aacttacttt gcattctaca tattctgggt
     6001 gaatttcttt tttcattagt tttccttaaa aattaaaaca ataagccgtg attataaatt
     6061 atttaacata aaaaagagat taatttaaga aaagttaaag caaaattttt gaagctatag
     6121 ctataatagc tgtttgactt tttagaatat tagagctttt aagagagatt ttccggttaa
     6181 acaataatct ctcatcattg ttaaatccac cttcaggacc tataaaatat aattcttttt
     6241 catcgaaatg actttgttgt tctccttgaa aatcaaccat aattgcattt ggaaattttt
     6301 gaacaaattc ttgagtgctt tggtggataa ttaaatccat tttagtattt ctaccgcatt
     6361 gttcacaaga agaaataatg attttttcaa atctttctaa atcgatttta aaatttcttt
     6421 gtgaaaaatt tgtaaaaacc aaatgtaact tttttactcc aagttcattt aagaaaggta
     6481 gagttttttc taaaatttta atatctataa tggctaaggc taagtttaat tcactttgtt
     6541 ttatattttg tgattttttg tttaaaaatt ttaaagtgca agaatttctt gttaaatttg
     6601 tgattgtata gttgtaaaga aaattatctt gtaaatttct aagatttagc tccgaatttt
     6661 cctttactct tcttactttt aaatggttaa agttttcacc ttgaagttgt ataaactctt
     6721 ctccagcttg cttgttatac aaaaattgca ttttatagat atctttctat taaaaaaggc
     6781 aaaaacaata aaaaaatttc aaaaggtaaa atcaaacaac taatccatct aaaagtggca
     6841 tattttctaa atcttcttgc ttttttaaaa caaacaaagt gaaaaattgc taaggcaaaa
     6901 attaagatcc aagaaaaaat cattacccag atattgacat tcatttgaaa ttgtttcatt
     6961 gctgataaca aacaacctgt aaaaataatc aaagctaaaa ataaataata aattggtaaa
     7021 aataatcgta ttctgcgaat aaaaatgaat tcggttttaa aatttccttg tgttagtata
     7081 agataaaaaa gcattaaaaa accgctcgca taaagactat aaagatgtaa agctaaaaag
     7141 aattcgtaac tttgatccat tattttcctt tgtttataaa atcagctaaa ttttgaattt
     7201 gttcatcact taaaaaacta tggtttttat cttttatcgt ttttattttt tgtataaaaa
     7261 ttttattgct caaggtttta atggccgtgc tgtttttagg ttttaattcc cctttttctc
     7321 catgacaagt ggcgcatttt tgtttatata aagagttgat aatactagga ttgacttcat
     7381 gttcatcatt tgaactttgt gcttcatcat ctacaggtaa aggcaggttg gagtcactta
     7441 attctgtttt ttcatcgttt tgttctattt ggactacttc ttgatctgta ttttgagtct
     7501 tggaaatatt tttttcatca ttagaacagg cagataaaac taataaaaaa aaacttaagg
     7561 caattaaaat tttagctttt tgcattaaat ctcctttgga tttataaaaa tttcttcatt
     7621 ttttaatttg ttataaaaat ctatatcatt ccattctgct ttaatgccat tggaaaattc
     7681 tatgtcttga agtgaaattt ttggcattag ctcactatag gcatcttctc taaaaccttg
     7741 tgcatagcct gttcttgttt catgaacaat gatgctttgt aaagtcactc cttgttctcc
     7801 atttaccatt tttgtttgtt ttaataaagc atctataagt atgaaaaata cacgacaaaa
     7861 attttcagca cttacattaa caggcaggca aatccaacga cttgaatatt ttttcatttc
     7921 ttctaaatat tttgcgtcat catatttaaa aagagtgata gcatgatcaa aactatcaat
     7981 aatttggcgt atataggttt ttaaaagtcc aaaatcatag accattccag cattatctaa
     8041 atatttgctt tcaagtaaaa cttcaacttt gtaagaatgt ccatgaatgc tacttttgca
     8101 acgcttagaa gaacaaaatc taacaatgtg tgcgttttca aattcaaata attttcttat
     8161 aatcatacac cctctttatc gttccaaaga cgaatatgaa ttctatcaga ataattataa
     8221 ccattcttaa tacaaaattc agcaattttt tgagcatttt ttttaaggtt ttgctcattt
     8281 tcacccatag gcatacaaaa aatttgattt ggagcttctt ttagaatttc attgatttct
     8341 aaaaatgaat tatcaagagt attggcatct aaaacaaatt tataaaaact atcttttgcg
     8401 taatttttaa atgcttttaa agctttaaaa tttaatcgtt tatctttttt tatcccacta
     8461 ttttggagtt taacgcttaa agcaaaaata cattctttgt aaaaaggata tctatcaaaa
     8521 tcaatttcta tgcttccatt gctttcaaag tgtatttcga atttattttt taataacatt
     8581 tggataaatt ctataaattc aggattttca taatggatta atggctctcc acctgtgata
     8641 acaactatag gatcaaagtc tttttttaat tttatcactc tttttaaaag ttcattagca
     8701 tttaaagttt cataactttc tttaaaatct tttgtgaaaa cagctcttat cgtgtcacat
     8761 ccaatgagag ttttatcgtt ttttgatatt tttacattaa aacctaaaca gttgaaattg
     8821 caaccagcaa aacgcataaa aatagctaat tttccattat atttgccttc tccttgaatg
     8881 cttaagaaac tttcaacaag ttgcaaaatt aacctccagt ttgataaaaa gcacgagatg
     8941 aggtttcatt atcaacaaca ctccatttat ttttttctgg tttatttctt aatacttctt
     9001 gtaatatttc tacagcggct ttaatatcac cttttcgaac cgcttctttt atgcttaatg
     9061 cttcatcaaa ataaaggcaa ggtattaaca agccttcagc acttaagcgt atgcgattgc
     9121 aagaatcgca aaattcatgg ctatgaggat ctataattcc aaattcataa tcatctgcct
     9181 tgtaaatact cacaggtgct ttttcatctt tttttataag ttgaatttga tatttttgac
     9241 tcaaaatttg tataatttca tctcttttta atccttgtaa tttaccataa gcatgagtat
     9301 tttccataaa ttctataaag cgaatttgag ctttttttga ttttgcaaat tccaaaagag
     9361 atatcagttc atcatcgttt aaatttttaa gagctacagt attaagtttt actttcaaat
     9421 ctagatttaa agcttcatca attccagata aaacactatc taatacatct ttttgcgcaa
     9481 gagtttttgc ttttttgtga tctagggtat caagtgaaat attaagtcgt ttaagtccag
     9541 cattttttag gtctttagca aagtctttta gtaaaaatcc atttgtagtt atagcaaggt
     9601 caatatcgct tttataatcg ctaatcattt ttataaaaat acttaaatct tttcttaata
     9661 aaggttcccc acctgttata cggatttttt caattccttc gtctatagct gctttaacaa
     9721 ataaaaaaag ttcttcaaag cttaataaat tttcttttgg ctgataatcg aaaggaattt
     9781 ttggcataca ataaaggcag cgaaagttac atctttgtgt aactgaaatt ctaagataat
     9841 ttatctttct accgaattga tctataagca tttattttcc attctatttt attaatttct
     9901 taaattttaa gacaagttct acatttccag tgccaatgcg taaatcttta gcgatttgtt
     9961 ctatgctttt tccttctttg aaaagatttt ctattttttg ttcttctgta tcgtaatttg
    10021 gtgtaagttt agccatgctt tgtgcttttt gttccaaatt taaaagacga ttttgttgtt
    10081 cattttgaaa atcttctatg atatgttcca tagtttttag tgttcttaaa acaggagtga
    10141 tttttgaact gatttgttta tcaagttcaa tcataatttc ttcttttaaa agagaggttt
    10201 tatagtcttc atcctcttcg ctatcatctt taactcctaa ttctttacga aaataatgaa
    10261 gttctttggt aatatcttct atcacatttt gaagttttgc tatttttgca ttattttctc
    10321 tttctttgat attcatgtag gctagcattg caattaaaag cacaattata aaaactaaat
    10381 aaagtacatc atcactcatt cttggccttt cttatttctt atcatatttc tttggatttc
    10441 aacaacaaaa gcatcaaaag ccattttgtc ttcaggctta attttgataa tttttgccaa
    10501 tgtttgactt tgagctttga taaaaatagc tattttttga ttatttaaat caaatcttaa
    10561 ataatattct ttatcttctt ctaaaatagt atccaaaaaa tttagatact caaaatttaa
    10621 agattctatt accccttttt gcttaagtgg tataagttct ttatttttat ctaaagaatt
    10681 ttcaagtctt aaaatatctt cttttagact taaaagaaga tcaaaaataa ttttttcacc
    10741 ctcgtcaaaa tcaatgcgta aagcaagttt tttccatttt aaaatttgag aaattgctcc
    10801 aagttttagg tattctccaa gaaaacggtt attttctatt tcacaacatt ctaaatgagc
    10861 ttcaaatcct gctttaaaaa gtgctaattc cataataaat caatccaaat aaaaataaaa
    10921 aagataatac ttaaataacc atttagagta aaaaatgctc tatcaatatg agcaaaattc
    10981 ttatgaacaa ttttatgttc caaggctaaa ataataccgc ttataattac cccaataagt
    11041 gctatttttc caagtgctac accccaaact tcccacacaa aaagaagcca aaataatacc
    11101 gctaaaatat ggcaaaaaga tgatataaat aaagtagcct ttgaaccaaa tttagcagga
    11161 atagagtgaa gtcctatttt tttatcatac tccatatctt gtaaagaata aagcagatca
    11221 aacccagctg tccaaaaagt tacacctaaa cataaaataa cgctataaat gtgaatttca
    11281 cccataatta taacacttcc tgcaataggc gcaagtccta aacaaaatcc taaaactaaa
    11341 tgtgctaaag aactaaagcg cttaaaagct gaataaatag ccaataccaa aagcacagga
    11401 aaagacaaat aaaaggccaa ggtattaata aaataagaac atgatataaa aataagtgca
    11461 ttaataatga taaaaatcca tacgcttttt ctacctattt ttccactgac attagggcga
    11521 tttgcacaac gaggattatc cttatctata tcttcatcca ttaaacgatt tgtagccatg
    11581 gcaaaatttc ttgcacttac tgcacaaata atgcctaaaa tcaacgcctt aaaaccaaac
    11641 caagcagtgt catttgcaag ttttgatgct acaatcatag aggaaaataa aaaaggcaaa
    11701 gcaaaaatag aatgcttaaa tactacaagt tctaaaatat ctttaaattt tatccagaat
    11761 gtgttcattt ttctacttta aaatattttt tgctatgatt ttactaaaat ttttataaat
    11821 tttaggataa atattaaaat gttttttgaa atagcattaa taggaacaac cgcgagtgga
    11881 aaaacataca tagccaatac tttagcaaga gaatttaatg ctgttgtttt aagtcttgat
    11941 agtctttgtg tttataaaga gattaatata gcaagtgcca agccttcaca agatgatctt
    12001 gcgagtataa aatactttgg ggtaaattta ttgagcgtga atgaacattt taatgttgag
    12061 ttattcataa gagaatatca aaaagcaaaa gaatttgctt tagctagaaa tttacctcta
    12121 attatagtag gtggaactgg attttattta aaaactatga tagatggttt aagtgaaaaa
    12181 accttagagt caaagagttc tttaaataac gatgaaattt atgctctttt attaaatatt
    12241 gatccaaact ataaaataga aaaaaatgat acttatagat taaaaaaatg gctgggtatt
    12301 tatgaacaaa caagagaaat tcctagtgaa tttttaaaaa gaacacaaaa aactggggtg
    12361 cttaaagata tagaaattta tgagcttgcg tgggataaag aaattttaaa aaaacgtatt
    12421 aaaactagaa caaaagaaat gcttgataat ggacttttag atgaagcaaa aattcttttt
    12481 tctaaatttg atcataaact taaagcatta aattctatag gtttgaaaga gtgtaaagaa
    12541 tatttagatg gagaaatttc ctttaaagag cttgaaaatt taatcacgat acatactaca
    12601 caacttgcca aaagacaaag aacttttaat aaaaaatttc aaagtaaagc cttggaattt
    12661 gataaagctt tagctacttt aagaatgaaa ttttcaatcg aaaaataaat gttctattag
    12721 aatttttact cctagtataa ttaaaaccaa tccgcctaaa agttcagctt tatttttaag
    12781 ataaattcca aatttattcc ctatttttag agcaatgata cataaaatga aggtgataat
    12841 acctattaaa aatatagcta ataataaatt tacatttaaa aatgcaaaac tcacaccaac
    12901 tgctagtgca tcgatactcg tagcaattgc taaagctagc atggttttaa agccaaattg
    12961 attggcatta ctatcgcaat tttcattttc caatgactct ttgatcattt ttaatcctat
    13021 taaagaaagt aaaataaaag ctatccaatg atcaatactc gcaataaaag atgcaaaagt
    13081 tatgcctata aaataaccaa tagttggcat caaagcttga aatccaccaa aataaattcc
    13141 aacaataaga taatgtttta aatgtagttt tttaacacta aaacctttgc atagtgatac
    13201 agcaaaagca tccattccta aagcacagga taaaaaaata agactataaa aatccataac
    13261 aaatcctaaa attttataaa aaattgaaga tgaaattata atcaaacaaa gataaaaatc
    13321 acataatttt gatatattta attaaatttt aagaaataaa tatatataat tcaatttcat
    13381 ttttattttt tactccttaa aagtggccca ttcgtctagc ggttaggaca tcgccctttc
    13441 acggcggtaa cacgagttcg agtctcgtat gggtcaccac tttttaattt ttcttttaaa
    13501 ataacaattt tttcattttt tctattgaaa tttaataaat attaataatt tattttgtag
    13561 aatacgaata gcttttgata taagtctatt atagacttat atcaaggctg ggcattattg
    13621 agctggtgtt tgctcttttg tttttttgtg agttttagct tcatgttttt tatcagcttt
    13681 agcttttgaa tgatgagctt ttgtatgtgt ttgatttaca tcgcttggag tattagctgc
    13741 aaaaacatta gctgcgaaag cacctagtaa tgctgagatt agtacaactt ttttcatatt
    13801 ttcctcctta tgaataattt ttagttgcaa attaattgta attattaaaa atcaacaaat
    13861 agatattttt tgtaaaaata tttcaaaaaa atataat
//
LOCUS       DARBBO010000040        13744 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.040, whole genome shotgun sequence.
ACCESSION   DARBBO010000040 DARBBO010000000
VERSION     DARBBO010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13744)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13744)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13744
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.040"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            123..1373
                     /locus_tag="SB854_000948"
     CDS             123..1373
                     /locus_tag="SB854_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HEG0956956.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNLSLFANVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGGYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASHGRIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFVLVMGIVAISAAIHDLL"
     gene            1388..2752
                     /locus_tag="SB854_000949"
     CDS             1388..2752
                     /locus_tag="SB854_000949"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HEG0956957.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLS
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAELEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEICAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKVIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGANAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2760..3281)
                     /locus_tag="SB854_000950"
     CDS             complement(2760..3281)
                     /locus_tag="SB854_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956958.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDDL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNETKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLLFLMICLLLLVMGVINLGLLFKQIRILKSFSKEEMK
                     EFLSQRMKKYTKV"
     gene            complement(3262..4272)
                     /gene="ribD"
                     /locus_tag="SB854_000951"
     CDS             complement(3262..4272)
                     /gene="ribD"
                     /locus_tag="SB854_000951"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HEG0956959.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     EKILAIKAHEKAGLAHAELNAIAHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDENKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHEIRAVIDLLV
                     VGGETIRKDCPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKIFKDEIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(4477..4564)
                     /locus_tag="SB854_000952"
     tRNA            complement(4477..4564)
                     /locus_tag="SB854_000952"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4528..4530),aa:Ser,seq:tga)
     gene            complement(4586..4659)
                     /locus_tag="SB854_000953"
     tRNA            complement(4586..4659)
                     /locus_tag="SB854_000953"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4625..4627),aa:Cys,seq:gca)
     gene            complement(4678..4766)
                     /locus_tag="SB854_000954"
     tRNA            complement(4678..4766)
                     /locus_tag="SB854_000954"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4730..4732),aa:Leu,seq:taa)
     gene            complement(4776..4850)
                     /locus_tag="SB854_000955"
     tRNA            complement(4776..4850)
                     /locus_tag="SB854_000955"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4816..4818),aa:Gly,seq:gcc)
     gene            complement(4922..5674)
                     /locus_tag="SB854_000956"
     CDS             complement(4922..5674)
                     /locus_tag="SB854_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0956960.1"
                     /translation="MLAFFKGLGVGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNANTNIAPR
                     MLNAKSDNIELSSPIISKKEQILNAKALFICK"
     gene            5747..6766
                     /gene="mutY"
                     /locus_tag="SB854_000957"
     CDS             5747..6766
                     /gene="mutY"
                     /locus_tag="SB854_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEG0956961.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFGAKLPKDVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQALLDIGALVCVGKNAKCRICPLYDF
                     CQGKFHTELYPRAKKILYESLNLNLFLFEFNKKFAIQKSQDKLYKGMYNFPFFKEGEY
                     KLSKDMGFVGEFKHSYTKYKLNIKVYHQILNNENKNYEFKTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(6752..8011)
                     /locus_tag="SB854_000958"
     CDS             complement(6752..8011)
                     /locus_tag="SB854_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0956962.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKGTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFVIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLCLPKKSELN"
     gene            8177..9034
                     /locus_tag="SB854_000959"
     CDS             8177..9034
                     /locus_tag="SB854_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM/SPASM domain-containing protein"
                     /protein_id="HEG0956963.1"
                     /translation="MKFKKIYIELSDICGLKCDFCPSQKGIRGVMSEEKFQNLAYEIS
                     NKAELFTFHLLGDPLLLPNLENYLKIAKDEAMKLEITTSGFYLNSKNQALLLGYENIH
                     QINISLMSFLSQSKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNL
                     KIYEFLAKEFEAKIDANLSKNRLQRHILLHQNKLFKWPNLKDEPLYKKGKCHALKEQI
                     GILSDGSLVPCCLDTKADINLGNVFENNFDKLFRSPRIKMMKKAFEEDKRIEKLCQTC
                     EFFKARLGD"
     gene            complement(9031..9837)
                     /locus_tag="SB854_000960"
     CDS             complement(9031..9837)
                     /locus_tag="SB854_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG0956964.1"
                     /translation="MKKILIIMSLFLIALNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFNQKFKKLSDKPLNKSAIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTPILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(9834..10610)
                     /locus_tag="SB854_000961"
     CDS             complement(9834..10610)
                     /locus_tag="SB854_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0956965.1"
                     /translation="MLKIHNLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGVISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYP
                     NLKHAFSSYSKEDILEIKEFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLNLCEKLVKEKNIAVVAILHDLNLASIFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            complement(10610..11595)
                     /locus_tag="SB854_000962"
                     /pseudo
     CDS             complement(10610..11595)
                     /locus_tag="SB854_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
     gene            complement(11570..13699)
                     /locus_tag="SB854_000963"
     CDS             complement(11570..13699)
                     /locus_tag="SB854_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HEG0956966.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNKAINLQKVVVSTTGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISSISFVNFGLGRNIDMRGQGNKSNIA
                     VKVMIDGHAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITK
                     KQKSDAFAINLKSSAYDHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQEGYNEK
                     GYFINTKTYIDINDNSDLTLGYNYFKSKNTSSGYLTKAQAQSDPTQKGKSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDVSTMSYMNMSLPVYQNGSGFEDTLT
                     GISLKNKLNYANNSYFIFGYEFANHDAKRKSLVYYSVPSVINYHRMTTLIDMTKQSHS
                     IFALDSHNFNEFFTLSGGARYEFSSYNTDRSYRNEMSMNGRPPSPTIIDSTTLFDTNK
                     NANNFAFEITPNFKYSDTGKLYIKYERGFVSPSPAQFVNKDKNSQKYYSANLNPEIFD
                     TFELGIDDFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVEL
                     SLSQNFLDDDLIFRESLTYLDAKISKGVNDGMRIPYVSKIKATAGLEYAWNKNFSNFI
                     DLTYFSRAKDGGTIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKRY
                     YTYQDSINDQYLVGNGRNYYVEFKYAF"
BASE COUNT         4631 a         2044 c         2189 g         4880 t
ORIGIN      
        1 tttttataaa attaaattta caaaatgtta cataagattt aaaatatttt ttttaaaaaa
       61 taattattta taaatatttt gctaaaataa aagagatgta atcttaaatt taaggaagaa
      121 taatgaatac tcctaaatgg actagtcacg atacaaggtg ggttttatct ctttttggaa
      181 cagctattgg agccggcgta cttttgttgc ctattagtgc tgggcttggt ggattgatac
      241 ctttgttagt tatacttgtt ttagcttttc ctatgactta cttagctcat agaaatttat
      301 gtcgctttgt gctttcaagt tctaatccaa aagatgatat tacttttgtt gcagaaagtt
      361 attttggcaa gggcggtgga tttttaatta cacttttgta tttttttgct attttgccta
      421 ttttattggt ttatagtgct aatcttacaa caactttgct tgagttctta atcaatcagt
      481 tcaatttcaa tgcagatctt actcatgctg ctcgttggtg ggtgagtttt ttgattgttg
      541 gagttttggt tttgatttct attcttggtg aaaatgttgt aacaaaagca atgagttttc
      601 ttgtttttcc ttttattata tttttattta ttttttcatt gcttttaatt ccacaatgga
      661 atttatcgtt atttgcaaat gttgattttt ccgtaatttc aacaagtaat ttttgggtta
      721 ctttatggct tgttattcct gtgatggtat ttagttttaa tcactctcct atcatttctt
      781 cacttgcttg ttattgtaaa aaagaatatg gtggttatgc tgaacctcgc gctagaaaaa
      841 ttatttcttt ggcaattatt cttatggttt ttgttgtaat gttttttgtt ttttcttgtg
      901 ctttaacctt tacaccagaa gattttgcat cagcaaaaga tcaaaatatc aatattctta
      961 cttttatagc aaataaattt cctgaagttt ctttactagc ttatgttgga cctattgttg
     1021 cacttgtggc tattagcaaa agtttcttag ggcattatct tggttctcaa gaaggcttaa
     1081 atggtatttt atataaagca agtcatggta gaattcaagg taaattcgct caaactttaa
     1141 cagcgatcat tacctttgct atcgcgtggc ttgttgcgta taaaaatcca agtgttatag
     1201 gaattatcga ggctattggt ggtcctgttt tggctatttt gcttttctta atgccgcttt
     1261 attgtattta tcgttttgat attttggcaa ggtttcgtaa taaattttta gatctttttg
     1321 ttttggtaat ggggatagtt gcaatttctg ctgcaattca tgatctttta taaattaagg
     1381 ataaaaaatg agtaatttaa gcatttttaa aataggtgtt ggcccttctt cttctcatac
     1441 tttagggcct atgcttgctg gaaatttatt ttgtaaaaaa gttgctaaaa agcttgatga
     1501 aattgataga gttgaggtta ctctttatgg ttctttgtcg ttaacaggca aaggacactt
     1561 gagtgataag gctgtgattt gggggttaaa tggcttagaa gctaaaaatt taagtgcggc
     1621 aatacaagat gaagtaaata aaaatgctat tgaaaatgct caaattgatt tttgtggcga
     1681 gaaaaaactt agttttaatt atgaaaaaga tttgatattt tctaaagatt ttttaccttt
     1741 acatgagaat ggtatgaaaa ttaaagctta tgattgtaaa ggtgggttag ttgatgagga
     1801 aacttattat tctgtaggtg gaggctttgt tttaacagct gcggaattag aaaaaaaagg
     1861 taaaaattct aaccaaaata aaaagaaaaa actagatata gagcttaata acgctaaaga
     1921 agctttagag ctttgcgata aaagagattg ggatttggca gagctttctt atcgttatga
     1981 attgcaattt cacactaaag aggaaatttg tgcttattgt cttgaaattt gggaagtgat
     2041 gcaagaagtg tattataatg gtacgcaccc gaatgaagat tatttgcctg gaaaacttca
     2101 tttaaagcgt agagctaaag gacttaaaga aagagtagcg atgacagctg atcctatggg
     2161 tattatcgat tttatttctt tatatgctat tgcgattgct gaagaaaatg ctagcggagc
     2221 aaaagtcgta accgcaccaa caaatggagc atgtgctgtt atccctgctg ttatgcttta
     2281 tcttaaaaat catactatag gttttagtga tgaaaaggtt atagagtttt tattaacagc
     2341 aatgcttata ggttcttttt ataagaaaaa tgcaagtatt agcggagcag aagcaggttg
     2401 tcaagcagaa attggtagtg ctagttctat ggcagctgcg gctatggcaa cagttttagg
     2461 agctaatgct tttaaagcat gtaatgctgc tgaaatggca atggaacatc atctaggtct
     2521 aacttgcgat ccagttgcag gacttgtgca aattccttgc atagaaagaa atgcctttgg
     2581 agccattaag gccataagtg ctgctagaat ggcaatgaca cgcaaatcca ctcctatggt
     2641 aagccttgat gaggttatag aaaccatgta tgaaacagga aaagatatga attataaata
     2701 taaagaaact tctttaggtg gtcttgctac aaatttaaaa acagtatgct aaagtgtttt
     2761 tacactttag tgtatttttt cattctttga cttaaaaatt ctttcatttc ttctttggaa
     2821 aaacttttaa gaatgcgaat ttgcttaaaa agcaagccaa gattgattac tcccatcact
     2881 aaaagcaata agcaaatcat taaaaaaaga agatctatgg ctccaaattc attaatcata
     2941 gccaaacttg caaaaaatac actcgctaat aacaaaaaaa ataaaagcaa tatttgtttt
     3001 aattttgtct cattaaaatt atcgcaattt tgagtgaaat ttctaaaaag tatgatcttt
     3061 ttacccaaat ttgaaactaa aatttcatca ttttccttaa ataagccttc ttttaaactt
     3121 tgataaaaaa agatttcatt gtttaaattt aaatcatctt tgtagcttga tagggtgtag
     3181 tccttgtaaa aaaaggattt taattcattt ttcttttcta ttttaaataa tcttaaatca
     3241 tttctcgcat aaaaaaatcc actaaagttc ataaatgcca taagtatcac tccctaaaaa
     3301 attcctgtaa agtggcttga aatttaaagg tattgtaaca tttttttcat catttaaact
     3361 tgaactttgg aaaatcaaaa acatatctat ttcatcttta aagattttga gaaaattttc
     3421 tccaccctca tacattaaaa atttagcttc acttggaatt tgggtataaa tttggcggtt
     3481 tggaacttta aataaaggga tatttttatc aaaattatct atattttgac ggcttaagat
     3541 acaaagatta ggcgcttttg ctttgcaaag cctagcatct aatatagggc aatcttttct
     3601 tatggtttct ccaccgacta caagcaaatc aatcaccgct ctaatttcat gtgcataagt
     3661 gcgacttagc tcattgctta cgattttgcc aaaaggtgag ccgttcatag aaagggctaa
     3721 tttaaaaagt ttaaattgcc ctttttgcca ttttaaaaaa ggttttaaaa gtttttttcc
     3781 ttcttcttta agtatgtcaa attcaacctc tataccttgt ttttttaaaa attcagcccc
     3841 accgcttgcg attttatttt catctttaac gctgatgaaa atttttttaa aacctagctc
     3901 gctaaagagt tttgcacaag gaggtgtttt tccttgatga gagcaaggct caagcgttac
     3961 aaaagctatg ctatctttaa atacaccttg atggtttttg caaataaact catgtaaggc
     4021 gtttgcttct ttgggcaatg aaatttcagg tcttaagctt ttaaaagcat gagctatggc
     4081 attaagttcc gcatgagcta atccagcttt ttcatgagct tttatggcta aaattttttc
     4141 atttttatct aagattacac agcctacagc cggatttgga taggttaaaa actgatattt
     4201 ccaagcctca tttaaagcta aattcatata aaattctttc atttgcctac cttgtatttt
     4261 aaaatttgac atatttttaa aattttatat ttttgtttta agataacaaa ttctaaattt
     4321 ccatttgtat ttcttatttt taattatatt agccatagtt tttctaagtt tttttaggat
     4381 ataacaaaaa tagtaagacc gaagtattat ttttcatttg tagtatcctt tataatttca
     4441 ggaataatat aagcttgata aactagaaag tcttggtggc cgggagaaag ggattcgaac
     4501 ccctggaggt gtgaccctca acggttttca agaccgccgc tttcgaccac tcagccatct
     4561 cccgataaag taaagttttg ccttttggag gcgacatccg gattcgaacc ggagatcaag
     4621 gctttgcagg cccatgcctt accgcttggc tatgtcgccc tgataatgtt gaaaaagtgg
     4681 tgcccgaggc cggacttgaa ccggcacgga agaaaaattc cgagggattt taagtccctt
     4741 gtgtctacca attccaccac ccgggcgggt gattatggag cgggaaacga gattcgaact
     4801 cgcgacccca accttggcaa ggttgtgctc tacccctgag ctattcccgc ataaatttct
     4861 gaaagaattg aagataaaag tatagcaaaa taaacttaaa aggagtttat tttgctataa
     4921 gttatttgca aataaataaa gcttttgcat ttaaaatttg ttcttttttg ctgataattg
     4981 gagatgaaag ttctatattg tcagatttcg catttagcat tctaggtgcg atattggtat
     5041 tggcatttac ttgtaaattt ttcaatacac aagttttatt aagatctaaa gagtaagttt
     5101 tttcatattc gtatgatgtt tttaaaagct ctttgtagag attttctttg ttgttgttta
     5161 gtgtatcttt tgaaaatttt gtttgtatgg ctggtgttga aacgctgatg aaattatttt
     5221 tagctatgat agaattgatg tcatttaaaa gcttgttaaa atctgcaagt tggttttctt
     5281 taaattcaca ttctaaattc gcatcaaatc tttgaccttt tggagtttgt ataccatctt
     5341 tataggaaaa attaggttct aaagaaaaac ttcctccgct acaaaaattt tctttttttg
     5401 agcgttctaa aatttgattg aaagtatttg tgatttcagc tttttcacta ttgtctaatg
     5461 taatttttga acttaaattt tcatttgccc aaaaattaat atttgcatat aaaatatcgg
     5521 gttttagcgt attgcttact tctatatttc ttgaaaaata taaatcatga ttagagtctt
     5581 ttttgcctaa aaattctaca ttaaaaacta ctcctgcaac aaaaagtaat aaacataaaa
     5641 aacctacacc taaaccttta aaaaaagcta acatggatat ccttaataat ttaatttgag
     5701 ctaattttag caaaaaattt taaaattttt tgttatactc tcatttatgc aaaaaaaaga
     5761 gcttgaaaaa ctacaagaaa atttacttct ttggtatgaa aaaaatggac gcaaaacttt
     5821 gccttggcgt aatttacaaa gtcaaaattg tgatgaaagt ttaaagcata ttgatagagc
     5881 ttatggggtt tatatcagcg aaattatgct tcagcaaact caagttaaat cagttttaga
     5941 aaggttttat ttcccctttt tgcaaaaatt tcctacttta gaaagtttgg ctaatgctaa
     6001 tgaagacgag cttttaaagg cttggcaagg acttggttat tacactcgtg ctagaaattt
     6061 aaaaaaggca gccttagaat gcgtggataa gtttggggct aaattaccca aagatgttga
     6121 ggatctaaaa aaattaagtg gtataggagc ttatacagca ggcgctatag cttgttttgg
     6181 ctacgatcaa aaggtttctt ttgttgatgg caatatacgc cgtgtgcttt ctcgtctttt
     6241 tgctttggaa aatcctagca tgaaagaact tgaaaaaaga gctaaagagc ttttaaattt
     6301 aaatcatgcc tttgatcaca accaagcttt gcttgatata ggggctttgg tttgtgtggg
     6361 taaaaatgca aagtgtagga tttgtccttt gtatgatttt tgtcaaggca aatttcatac
     6421 agagctttat ccaagagcta aaaaaatact ttatgagagt ttaaatttaa atcttttttt
     6481 gtttgaattt aataaaaaat ttgcgataca gaaaagccaa gataagcttt ataagggtat
     6541 gtataatttt ccttttttta aagaaggaga gtataaactt tctaaagata tgggttttgt
     6601 aggggagttt aagcacagct atactaagta taaacttaat atcaaggttt atcatcaaat
     6661 tctaaacaat gaaaataaaa attatgaatt taaaacctta aaagagttag aaagtaccgc
     6721 actttcggca ctttctttaa aagcgttaaa attaattaag ctctgatttt ttaggcaaac
     6781 ataaagtagc tataagcatg atgattgtaa aaatagctat atatataaaa aagccatttt
     6841 ctatacctgc atttttaaat tgtaaagcaa cccaaggagc agatcctcca aaaacagcat
     6901 ttgaaatagc ataacctaaa cctgtcccta aagctcttac atgttcagga aaaagttttg
     6961 ctttaaaaat cccagcaact gaagtataaa aacttaaaat aacaaacaat aataccacca
     7021 acataaatgt caaagaagga ttattttgtg cgttattggc tataagtgaa aaaataggat
     7081 aaattcctac caatgccaaa atacaaaata caattaaaga tcgtttgtga cctattttat
     7141 ctcctatata tccaaaaaga ggttgaatga tcattagtat aaataaagca cctaagaaaa
     7201 gattattaac aagcatttta tccatacccg tattttccat aaaagtttta gtataagttg
     7261 taatggtgta aaaagctaaa gaacctccag aggtaacccc aagtaccatt aaaaaaggtt
     7321 tccaagattt gcataatgcc tttaaagtac cacgatcttc atgctggtga agttttgtag
     7381 cactttcatt catcattttt cttacaaaaa gcgagcctag tgctaaaatt ccgcctatta
     7441 caaaaagtat tctccaagca taatctttca tatcatcaat gctaaaaaat aaaaacatta
     7501 tactaatgct tgcaacggcc aaaagttgac cacctattag ggttacatac tgaaaagatg
     7561 agtaaaaacc gcgttttcct tccgtagcaa gttctgaaag ataagtagct gctatgccat
     7621 actccccgcc tacactaaga ccttgaataa gtcttgctat taaaagcaag ataatagcaa
     7681 gatcgcccac tgtacctttg cttggtaagg ctgctatcat aaaagagcct aaagccatta
     7741 aaaccactga tataaccata gattttttac gacctacttt atcagctaaa gagccaaaaa
     7801 gccaagagcc tataggacgc ataaaaaatc ctgctgcaaa aaccccaaag gcattgattt
     7861 gctggataac aggattatct gaagttgaaa aagtatgagc aaaataagtt gctgtaaaag
     7921 catagatata aaaatcaaac cactctacta aatttccgct acttgcagca ataatagagc
     7981 gaattttttt cgtgcgagta agctcttgca taaacccttc cttaatttta gatttttatt
     8041 taagtatagt gtgatttttg tttaatatat ttaaaaataa agaagagaaa taaaaaagat
     8101 aaaaatatcg ataaaaatgt tacatatttt aataaatttc ataaattttg gtaaaatgtt
     8161 tactctagga aatataatga aatttaaaaa aatatatata gaattaagcg atatttgtgg
     8221 tttaaaatgt gatttttgtc cttctcaaaa aggaattcgc ggggtaatga gtgaagaaaa
     8281 atttcaaaac ttagcttatg aaatttctaa taaagctgag ctttttacct ttcatctttt
     8341 gggtgatcct ttgcttttac ctaatttgga aaattatcta aaaatcgcaa aagatgaagc
     8401 tatgaaactt gaaatcacta caagtggctt ttatctaaat tctaaaaatc aagctttatt
     8461 gttagggtat gagaatatcc atcaaatcaa tatttcttta atgtcttttt taagtcaaag
     8521 caaaatttct ttagaacagt attttaaacc tattttagaa ctttgcaaaa agcatttaga
     8581 gcaaaaaagc ctttctttta tcaatctaag actttggaat ttagatgcta attttaaagc
     8641 acctaagtca aatttaaaaa tttatgagtt tttagccaaa gaatttgaag ctaagatcga
     8701 tgcaaactta agtaaaaatc gcttgcaaag acatattttg cttcatcaaa ataaactttt
     8761 taaatggcca aatttaaaag atgaacccct ttataaaaaa ggaaaatgtc atgctttaaa
     8821 agagcaaatt gggattttaa gtgatggaag tttggtgcct tgctgtttgg atactaaagc
     8881 agatattaac ttgggaaatg tttttgaaaa taactttgat aagcttttta gatcaccgcg
     8941 tataaagatg atgaaaaaag cttttgaaga agataaacgc atagaaaaac tttgtcaaac
     9001 ttgcgaattt tttaaagcaa gattgggtga ttaaaaattg ttattttcta gctttgtttt
     9061 aaattcttga attctatcta ttatcttagg actaagacgt aataatatag gtgtatcttt
     9121 gttaaaataa atacttcctg ttttaactgc tttggtattt ttcaataaag catttgtatc
     9181 taaaagattg tttttagcat taattccaag aatgagtatg tctggatttt gtttcagtat
     9241 gtattctgct gatataacag gtcttgaaat ttgactttgc gggcttaaat ttttaatccc
     9301 tataagtctt aaaatatcag ctattaaaga attatcatta aaggccatta aagggttgct
     9361 agaataaaga taaatcgcac ttttatttag gggtttatcg cttaattttt taaatttttg
     9421 gttaaattct tgttttaaaa gctctgcttc tttttctttt ttggtgattt ggcctaaggt
     9481 tgtgatattt tttgttatat cttctaaacg ctcggctttt aaattgatac ttttgatacc
     9541 aaaattttta agtccttctt ctaaatttaa agaataagag cttaaaatca ccaaacttgg
     9601 ttttaatgct actatttttt caagcgaagg atttgaaaaa gtgcctacgc ttgtaagttt
     9661 tgaggtttga tctttaggat aaatatttga gtgttgtaaa gtagcaatgc ctacgatttg
     9721 atcttcagcc ttaagcataa aaagggtttc tatgcttgca ggatcaagca ctacaaggcg
     9781 ttcttttgca tttagtgcga ttaaaaacaa actcataata attaaaattt ttttcatttt
     9841 ttctccttta aagctaaaat ataaggttta gaatttttat aaataatctc gcagtttaaa
     9901 tcataaattt cttttaaaat ttcttgagta aaaagctctt tgctcgttcc aaaatacttt
     9961 atctcccctt cttttaaaaa aaggatttta tcgcagaata tagaagctaa atttaaatca
    10021 tgcaagatag caacaacggc tatatttttt tctttaacta gtttttcgca aaggtttaaa
    10081 agctctatag catagtttaa atcaagggct gaagtgggtt catctaaaaa aagaattttt
    10141 ggctttttaa gcaaagctct tgctaaaagc attctttgaa attcacctcc gcttaaagaa
    10201 agtatgcttc tttctagaaa attttcaagt cttaaatcct tagcaaattc tttaatttct
    10261 aaaatatctt ctttagaata agaactaaaa gcgtgtttta aattcggata tttactcatt
    10321 aaaagcacat cgatgacttt taaaggggtg tttaattctg atttttgagg cacaaagcca
    10381 caaattttgg caaattcttt aagagaaaaa tccttgatat ttgtgttaaa aagacttatc
    10441 actcctttat ttggacttaa atttttaagt ataagtttta aaagagtgct tttgcctgag
    10501 ccatttggcc ctaaaattcc tataaaagct tggtttttaa gttctaaatg aatatttttt
    10561 agtaaatctt tttggtgata agcaaagctt aaattatgta tttttagcat tataaaaatc
    10621 tcctagcgct taaagctaag tataaaaaaa taggagctcc aaaaaatgca gttaaaattc
    10681 caatcggaat ttgcacagga gctaaaagag ttcttgctaa agtatcacaa ataagtaaaa
    10741 ataatcctcc aaatgctgta cataaaggga taactaaggc attattataa tttttaagca
    10801 aaagtcttat agtatgagga atgatgagtc caacaaagcc tataagtccg ctaaaagcaa
    10861 ccgcaaaaga tacagctaag gatgagacaa tgagtaaatt tatctttaat ttttgagcat
    10921 ttacccctag atttctagct tcatcatctc cgcttaaaag tatgtttaat tcgtttttat
    10981 gagcgtaaaa ataaaacaaa caaaaaatta aaggcaagat taaaattccc acacgaaacc
    11041 aagaagcatt gcctatattt cccataagcc aagcgactat tttaaaagaa tcctcgccta
    11101 taagataagt gaaaaaagaa gtaaaagccc ctaaaaaaga tgaagctgct atgccgataa
    11161 tgagtaagtt gctatagaag ctttagaaga aattttaaaa actcctaggg caaaaaaggc
    11221 agagcaaaca aaacctaaaa ttccataata ataatcattc aattttaaca aatacgccaa
    11281 aaccgctcca aaggttgccg cagaagctat acctatgata taaggatcag ctataggatt
    11341 tgaaaataca ttttgagtga tagccccact actagctaaa agcataccga ttaaaatcgc
    11401 cattataatc cgtggtaagc gtccatctat gattatttgt cttaaaattt catcttggct
    11461 aaagatatat gaaaaaagct cttttggatt taaattctca tctcctaagc aaagtgctgt
    11521 aaaagaagcg attatataag ctaccaaaag ccctataatc actaaaattt tagaatgcgt
    11581 atttaaattc aacatagtag tttctgccat ttccaactag gtattgatca tttatactgt
    11641 cttgataggt gtagtatctt ttatcgaaaa gattgcgaat tcctgctaaa atttgtagtt
    11701 ttttataatt atatttcatg ccaatatctg ttaaaaaata atcccttatc caagaatttt
    11761 tagacatttt tcctgtattt tcatctatag ttccaccatc ttttgctcta gaaaaatagg
    11821 ttaaatcaat aaaatttgag aaatttttat tccaagcgta ttcaagccca gctgtggctt
    11881 tgatttttga aacataagga attctcatgc cgtcattaac acctttagaa attttagcat
    11941 caagataagt tagactttct ctaaagatta aatcatcatc taaaaaattt tgactcaggc
    12001 ttaattctac tcctaaacgg cgagtttgat ctatattata atatttccac caagatccac
    12061 tagtagaatg agggtttcca agataagaaa tttcatcttt gcttagggtg taaaataaag
    12121 ttagattaaa gccgtaaaaa tcccaccaaa aatcatcaat acctagttca aaggtatcaa
    12181 agatctcagg atttaaattt gcagaataat acttttgtga atttttatcc ttgttgacaa
    12241 attgtgctgg acttggagag acaaaacctc tttcgtattt gatataaagc tttcctgtgt
    12301 ctgagtattt aaaatttgga gtgatttcaa aagcaaaatt attggcgttt ttattggtat
    12361 caaaaagtgt tgttgagtct atgatagtag gtgatggggg tcttccgttc atactcattt
    12421 catttctata agatctatcg gtattataag agctaaattc atatctagct ccaccggata
    12481 aagtaaaaaa ttcattaaaa ttatgagaat caagagcaaa aatagaatgg ctttgtttag
    12541 tcatatctat taaagttgtc atcctgtgat aatttatgac acttggaacg ctataataca
    12601 ccaaactctt tctttttgca tcatggtttg caaattcata accaaaaata aaataagaat
    12661 tatttgcata atttagtttg ttttttaaac ttatccctgt aagcgtgtct tcaaaaccac
    12721 ttccattttg atatacagga agactcatat tcatgtagct cattgtagaa acatctttta
    12781 gataattgat cttttgattt tgccaaaaag cttctaggtt aaattcccat atatcatcaa
    12841 aatagtaatg ataatccaaa gaaatttcag ggcgattgat ttgtgtgata ttatcactct
    12901 tacctttttg ggttggatcg ctttgagctt gtgcttttgt tagatagcca ctgctggtat
    12961 ttttgctttt aaaataatta taacccaaag ttaaatcgct attatcattg atatcaatat
    13021 aggtttttgt gttgataaaa taaccttttt cattataacc ttcttgatat ccatcaaggt
    13081 taaaactttg tatatcaaag ctaaaagcta aattttcatt tatttgtttg gcaccattga
    13141 tacctaaatt tccacctagt ccaccatgat cataagcact gctttttaaa tttatagcaa
    13201 aagcatctga tttttgtttt tttgtaatga tattaatcac gccacctcta gtaccacttc
    13261 cataaagcac agatccaccc ccaggtatga tttctatgcg ttctacatta tctaaattga
    13321 tactatctag tggggttaca ccatgggaat tatcaagaac attaatagca tgcccatcaa
    13381 tcataacttt tacagctata ttggatttat ttccttgtcc acgcatatct atattgcgtc
    13441 caagtccaaa atttacaaaa ctaatgctcg aaattctttc taaggcttgt tctaaagaaa
    13501 cataaccttt attttgtaga tctttgcctt ctatgctgat tacattgcgt aaatttgaat
    13561 ccgcatcttg ttcaaaacct gttgtactaa caacaacttt ttgtagattg atagctttat
    13621 ttgattcttg tgcatttaaa ttagttatta gcaataatgc aaataaagat aatttaaaag
    13681 cttttttatt tgggtgcaaa ttttactcct taaataaaat aaataatgat aatttatatc
    13741 ataa
//
LOCUS       DARBBO010000041        13655 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.041, whole genome shotgun sequence.
ACCESSION   DARBBO010000041 DARBBO010000000
VERSION     DARBBO010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13655)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13655)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13655
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.041"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            30..827
                     /locus_tag="SB854_000964"
     CDS             30..827
                     /locus_tag="SB854_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG0956967.1"
                     /translation="MFNFITTLLKTNLYFLEEKTTSKNSNQTHIISLKQSDDEFLNLL
                     FSFLVPQSDEDKNFIEKTRTKIKRNEHNIVLIKNPNFNALIDTGFLDTIDTLKEKLHI
                     HKTDFKDITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTL
                     LKLKNIEFIDHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIP
                     KPKIAIKFDIDQNEAIQTREKLLKEFKERKLKVIGTHAPFIKPKFLD"
     gene            915..1133
                     /gene="infA"
                     /locus_tag="SB854_000965"
     CDS             915..1133
                     /gene="infA"
                     /locus_tag="SB854_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEG0956968.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            1305..1418
                     /gene="rpmJ"
                     /locus_tag="SB854_000966"
     CDS             1305..1418
                     /gene="rpmJ"
                     /locus_tag="SB854_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEG0956969.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            1421..1786
                     /gene="rpsM"
                     /locus_tag="SB854_000967"
     CDS             1421..1786
                     /gene="rpsM"
                     /locus_tag="SB854_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEG0956970.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYDKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            1796..2188
                     /gene="rpsK"
                     /locus_tag="SB854_000968"
     CDS             1796..2188
                     /gene="rpsK"
                     /locus_tag="SB854_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEG0956971.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            2216..2842
                     /gene="rpsD"
                     /locus_tag="SB854_000969"
     CDS             2216..2842
                     /gene="rpsD"
                     /locus_tag="SB854_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEG0956972.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            2855..3868
                     /locus_tag="SB854_000970"
     CDS             2855..3868
                     /locus_tag="SB854_000970"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEG0956973.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGDSNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            3872..4225
                     /gene="rplQ"
                     /locus_tag="SB854_000971"
     CDS             3872..4225
                     /gene="rplQ"
                     /locus_tag="SB854_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEG0956974.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            4398..5297
                     /gene="hisG"
                     /locus_tag="SB854_000972"
     CDS             4398..5297
                     /gene="hisG"
                     /locus_tag="SB854_000972"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEG0956975.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQENKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCTLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQALVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            5305..6591
                     /gene="hisD"
                     /locus_tag="SB854_000973"
     CDS             5305..6591
                     /gene="hisD"
                     /locus_tag="SB854_000973"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEG0956976.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIIKEVQEKG
                     DKALIEQALKFDKAEISKIKITQEEITQASNRLDKDLQEAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALTYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGAAIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAK
                     KASDEVQSQLELLPRKELASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            6588..7646
                     /gene="hisB"
                     /locus_tag="SB854_000974"
     CDS             6588..7646
                     /gene="hisB"
                     /locus_tag="SB854_000974"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HEG0956977.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     KFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLKYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKVSIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            7643..8230
                     /gene="hisH"
                     /locus_tag="SB854_000975"
     CDS             7643..8230
                     /gene="hisH"
                     /locus_tag="SB854_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEG0956978.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKAKEGFTFPHMGWNEVYSSHALFKGLEGAYFYFVHSYCVGLGKYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGEILISNFIKDIG"
     gene            8227..8958
                     /gene="hisA"
                     /locus_tag="SB854_000976"
     CDS             8227..8958
                     /gene="hisA"
                     /locus_tag="SB854_000976"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEG0956979.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQFALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVV
                     IGSMAIKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFPNICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSVEEGIRCLAN"
     gene            8943..9899
                     /locus_tag="SB854_000977"
     CDS             8943..9899
                     /locus_tag="SB854_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG2958 family protein"
                     /protein_id="HEG0956980.1"
                     /translation="MSSKLSYKELTLEILKQSDRPLSVNEIWQKALEQGLDKKLSSIG
                     QTPIATLGARIYVDIKELQHNSLFIKASQKPTTFWLKERENELLKLDNKNEITNEKQE
                     KNKFHERDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYD
                     DYEKETITLLENIKQNSYKLFSFELKIALNFSNLKECYFQAVSNSSWANEGYLVVLQE
                     IDSEVLSELRRLNQSFGIGVIKLEKDISNSQILISAKEKELDIQTLNMLINKNPNFKE
                     FIDDINKQIKVGKEAKIQANFDEIKSDEEMEKYLKEKCILEK"
     gene            9900..10667
                     /gene="hisF"
                     /locus_tag="SB854_000978"
     CDS             9900..10667
                     /gene="hisF"
                     /locus_tag="SB854_000978"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEG0956981.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINISFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKHSGKSTLE
                     WVKKVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            10669..11292
                     /locus_tag="SB854_000979"
     CDS             10669..11292
                     /locus_tag="SB854_000979"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HEG0956982.1"
                     /translation="MQNFKELNEKIAWQKVDNLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIIDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(11317..12477)
                     /locus_tag="SB854_000980"
     CDS             complement(11317..12477)
                     /locus_tag="SB854_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-carboxylate
                     N-succinyltransferase"
                     /protein_id="HEG0956983.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     DGHQNIDLLKIIKDKFKDDEFSFVCLFEDKEPLSVESIYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLAHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(12503..13609)
                     /locus_tag="SB854_000981"
     CDS             complement(12503..13609)
                     /locus_tag="SB854_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEG0956984.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNTIEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSKRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
BASE COUNT         5067 a         2025 c         2395 g         4168 t
ORIGIN      
        1 aaatattatc taaaaattta aggataaata tgtttaattt tataaccact cttttaaaaa
       61 ccaatcttta ttttttagaa gaaaaaacca caagcaaaaa ttcaaatcaa acccatataa
      121 tctcacttaa acagtctgat gatgaatttt taaatttatt attttctttt ttagtgccac
      181 aaagcgatga agataagaat tttatagaaa aaactcgcac aaaaatcaaa agaaatgagc
      241 ataatattgt tctgataaaa aatccaaatt ttaatgcttt aatagacaca gggtttttag
      301 atactattga cacattaaaa gaaaaattac atatccataa aaccgatttt aaagatatca
      361 ctcatattat cttaacacac gcacatcctg atcatatagg tgctttaatg agcgaagaaa
      421 atctttttcc aaaagctcaa attttaattg ataaaaaaga atatgatttt tggatcaaaa
      481 gcgatagaca agaaattaaa aacaccttgc ttaaacttaa aaatatagaa tttattgatc
      541 attccaaaga tttgatcttt caaaattcag gcattaaagc catacctgct tacgggcata
      601 ccccaggtca aaatgctatc ataattgatg ataaaatagt cttttgggga gatttacttc
      661 atctttatga tatacaaatc ccaaaaccta aaatcgctat aaaatttgat atagatcaaa
      721 atgaggctat acaaacaagg gaaaaactac ttaaagaatt taaagaaaga aaactcaaag
      781 ttatagggac tcatgcgcct tttatcaaac ctaaattttt agattaatta cttaaaaatt
      841 actaaaaatt aagtaaaaat tttaataatt tttgctaaaa ttatagcctt tttatttcat
      901 gaaaggagaa aattttggca aaagatgatg taattgaaat tgatggcacc gtacttgaag
      961 cattgcctaa tgcaaatttc aaggttgaac ttgacaacaa acatgtaatt ttatgtcata
     1021 ttgcaggaaa aatgcgtatg cattatataa gaataatgcc aggtgataaa gtaaaagtag
     1081 aacttacacc ttatagcctt gataaagggc gtataacttt tagatataaa taatctaagt
     1141 tatttaaaag ctaattttag ataaaattag agtttttgcg acaaattaca tcgaactata
     1201 tgaagaagta tttttaaaat ccaccactta ttttgaaaat agttggttat tcataaaacc
     1261 tgatgtagtc gtaaatcaag tggaattcat tcaaggagac gctcatgaaa gtgagaccat
     1321 cggttaaaaa gatgtgcgac aaatgcaaag tagttcgccg taaaggcgtg gttcgcatta
     1381 tttgcgaaaa tccaaaacat aaacaaagac aaggataaac atggctcgta ttgcaggtgt
     1441 ggatttacca aagaaaaaaa gaattgagta tggactaacc tatatttatg gtataggact
     1501 tttcacttca agaaaaattc tagataaagt aggaatttct tatgataaaa gagttcatga
     1561 gttaagtgaa gatgaagcag cagctatccg taaagaaatt caagaaaact atatggttga
     1621 aggggacttg agaaaacaag ttgctatgga tattaaagcg cttatggatt taggaagctt
     1681 tagaggttta agacacagaa aaggcttacc agttcgcgga caaaaaacaa aaacaaacgc
     1741 aagaactaga aaaggtaaga gaaaaactgt tggtgcaaaa tcataaggat aaatcatggc
     1801 aaaaagaaaa atcgtaaaga aaaaagtagt taaaaaaaat atagcaaaag gtattgttta
     1861 tatcagtgcg acttttaaca atactatggt tacagtaact gatgaaatgg gaaatgctat
     1921 cgcttggagt agtgcaggtg gtttaggatt taaaggttct aaaaaatcaa ctccttatgc
     1981 agcacaacaa gcagtagaag acgctttaaa taaagcaaaa gaacacggaa ttaaagaagt
     2041 aggcattaaa gtacaaggac caggaagcgg tagagaaact gctgttaaga gtgtaggtgc
     2101 tatggaagga atcaaagtaa ctttcttaaa agatatcact ccattagctc acaatggttg
     2161 cagaccgcct aagcgtcgtc gtgtctaaga tataagaaaa atttaggaga atattatggc
     2221 aagatataga ggaccagtag aaaaattaga aagacgcttt ggtgttagct tagcattaaa
     2281 aggagaaaga agactagctg gcaaaagtgc actagataaa cgcccttatg caccaggaca
     2341 acacggagca agaaaaggta aaattagtga gtatggactt caattaagag aaaaacaaaa
     2401 agctaaattt atgtatggag taagcgaaaa gcaattccgt cgtttatttg ctgaagcagc
     2461 aagaagagaa ggaaatacag gggtattact tatccaactt ttagaacaaa gattagacaa
     2521 tgtagtatat agaatgggtt ttgctacaac acgtcgtttt gcaagacaac ttgtaacaca
     2581 tggacatgtt ttagtaaatg gtaaaagagt ggatattcct agctttagag tagaagcagg
     2641 tgctaaaatc gaaattatcg aaaaaagcaa aaacaatcct caaattacaa gagctatcga
     2701 acttacagca caaactggaa tcgttgcttg ggttgatgtt gaaaaagata agagatttgg
     2761 aattttcaca agaaaacctg aaagagaaga agttgtcatt ccggttgagg aaagatttat
     2821 cgttgagctt tactctaaat aataggggct aaatatgaga aatattacaa catctgctta
     2881 tacgccaaca gaatttacaa tagaaaacat tagtgatact gtggctaaaa tcagtgcttg
     2941 gccttttgag atcggctatg gaatcaccct agcccatcct ttacgccgtt tactttacac
     3001 tagcaccata ggatatgctc caactgcgat tcatattgat ggcgtagctc atgaatttga
     3061 tagcatgcgt ggtatgcttg aagatgtagc actttttatc attaatctaa aaaaactacg
     3121 ctttaaaatt aaaggcgact caaataaaga aatagtagaa tttagcttta aaggctcaaa
     3181 agaaatttac ggcaaagatc taaataatga tcaagtagaa gtagtaaata aagacgccta
     3241 tctagcaaca atcaacgaag atgctgaact caaattcaca ttgatcgttg aaaaaggtat
     3301 tggctatgta ccaagcgaag aaattaaaga gcttataaat gatcctaaat ttatagcttt
     3361 agatgctttc tttacacctg taagagaagc aacctatgat attgaaaaag ttttatttga
     3421 agataatcct gattatgaaa aagtggtttt aaccgtaaca actgatggac aaatcactcc
     3481 aaatgaagct tttcaaaatg ctctagaagc tatgtataaa caattatcag tatttgataa
     3541 aattaccaat gttagaagtg taattaaaaa tcaagcaaca agcaatgaac tagaaaatac
     3601 taaattattg caaaacatta cagatttaaa tttaagtgct agaagttata attgtcttga
     3661 aaaagcagga gtggtttaca taggcgagct tgctttgatg agtgtaagtg aacttgcagg
     3721 gcttaaaaat ttaggtaaaa aatctcttga tgaaattaaa aacatcatgg aaagcatagg
     3781 ttttcctgtg ggaacttcta agcttagcga taataaagaa atacttaaaa ataaaatcgc
     3841 agaattaaaa gcacaaaacg aaggataaag aatgagacat aaacatggat atagaaaact
     3901 tggcagaact tcatctcatc gtgctgcctt attaaaaaat ttaactatag ctttagtaaa
     3961 tagcggaaaa atcgaaacca ctctaccaaa agctaaagaa ttaagaggtt atgtagaaag
     4021 attgattact agagcaagac ttggagattt taacgctcat agagcagttt ttgcttcatt
     4081 acaagataaa aacgctacca ataaactagt aactgaaatt gctccaaaat tcaaagatcg
     4141 caatggcgga tatacaagaa tcatcaaaac aagaattcgc cgtggtgatg ccgctgaaat
     4201 ggctttcatc gaatttgtag cttaatcaaa tcctagcttt tgctaggatt aatacttcaa
     4261 ttaaatatcc taaaaataaa aagttttaaa taattatttt aaataaaatt aaatttattt
     4321 attttctaaa acccttgcta aaaattcaac tacttatgct aatataagtt tttaattttt
     4381 aatttcaagg atatgttatg caagaaaaca ctcgtttacg cattgcgata caaaaatcag
     4441 gtagactttc aaaagaatcc atagagcttc tttcagaatg tggtgttaaa atgcatatcc
     4501 atgaacaaag cttgatcgct ttttctacaa atttacccat agatatttta cgcgttagag
     4561 atgatgatat ccctgggctt atttttgatg gggttgtaga tttaggcatt ataggggaaa
     4621 atgttttaga agaaaatgaa cttgaacgcc agtctttagg agaaaatcca agctataagc
     4681 ttttaaaaaa gctagatttt ggatattgcc gtctttctct tgccttacct caagaaaata
     4741 aatttcaaaa tttgaaagat tttgaaggct taaggatagc tacttcttat ccacaacttt
     4801 taaagcgttt tatgaaagaa aatgggatta attataaaaa ttgtacgctt acaggttctg
     4861 ttgaagtagc ccctagggca aatttagccg atgcgatttg cgatcttgtt tcaagcgggg
     4921 caactttaca agcaaacaat cttaaagaag ttaaagtcat ttatgaatct cgtgcttgtt
     4981 tgattcaaaa agaaaatgct ttaagtaaag aaaaacaagc cttagtggat aaaattatgt
     5041 tgcgtgtagc aggagtaatg caagcaagag aatctaaata cattatgctt catgctccaa
     5101 aagaaaagct tgataaaatt caagccctac ttccaggagt tgaaagaccg actatcttac
     5161 ctttagcaca cgatgaaaaa aatgtagctt tacatatggt aagtaaagaa aatctttttt
     5221 gggaaaccat ggaggcttta aaagaagaag gtgcgagttc gattttagtt ctgcctatag
     5281 aaaaaatgtt aaagtgagta aaaaatgcaa attttagtat atgataattt ggatgaaaaa
     5341 caaaaagaag aagcgttaaa acgccctgct ataagtgcga aagatgaaat ttcaaaaata
     5401 gtaagttcta tcattaaaga agtgcaagaa aaaggcgata aagctttgat agaacaagct
     5461 ttgaaatttg ataaggctga aatttcaaag attaaaatca ctcaagaaga aatcactcaa
     5521 gcaagcaatc gtttagataa agatttacaa gaagctattt tagtggctta tgaaaatatc
     5581 aaaaaatttc acgaagccca aatcccacat gaaatcgctc ttgaaactac aaaaggcgtt
     5641 aaatgtgaag ttttaacacg ccctatagaa aaagtaggac tttacatacc agggggtttg
     5701 gcacctttgt tttcaacggt tttaatgcta gctattcctg caaaaattgc aggttgtgaa
     5761 aaaatcgttt tagcaagtcc tgcaaaaatc aatgatgctg tgcttttttg tgctaagctt
     5821 tgtggcgtgg atgaaattta tcaaatgggc ggtgcaggag ctatagcagc tttgacttac
     5881 ggtacccaaa gtgttttaaa ggtggataaa atttttggcc caggaaatgc ctttgtaacc
     5941 gaagcaaaac gccaagtaag tagtgatata aacggagcag ctattgatat gcaagcagga
     6001 cctagtgaag ttttagtcat agctgatgat ttagctaatg aaaaatttgt agctagtgat
     6061 ttgctttcac aagctgaaca tggtgcagat tctcaagtga ttttagtgtg tttaagtcaa
     6121 gattttgcta aaaaagcaag tgatgaagtc caaagtcaat tagaactttt gcctcgcaaa
     6181 gaacttgcaa gcaaaagcat tgctaattca cgcattatca tagctaaaga tttaaatcaa
     6241 gccttagaaa tttcaaatct ttacgcccct gaacatttga tcatacaaac tcaaaatcca
     6301 cgagaacttt taaaaggtgt aaaacacgca ggatcagtat ttttaggagc ttattcccca
     6361 gagtctatgg gtgattatgc aagtgggaca aatcatgttt tacctactta tggacttact
     6421 aaaacgcatt ctagtttagg tttggcagat tttagtaaaa gaatgaccgt tcaagagtta
     6481 agtaaagaag gttttttagc tttaggtaaa agtgttgaaa ttttagcaca aaatgagcat
     6541 ttagacgcgc acaaaaatgc agtaactttt cgtttagaaa gcttaaaatg agtcaaaaaa
     6601 tcctttttat agatagagat ggcactttaa tagaggagcc aaaaagcgat tttcaaatcg
     6661 atactcttga aaaattgcgt tttgaaaaag atgctattcc cactctttta aaactaaaaa
     6721 aatttggatt taaatttgtt atggtaagca atcaagacgg tcttggaaca ccaagttttc
     6781 caaaggaaaa ttttgaaatc gctcatgaaa aaatgcttga tattttaaaa agttgcggta
     6841 tagaatttca agatattttt atttgtccgc attttgaaaa tgaaaattgt gcttgcagaa
     6901 aacctaaaac cgctatgtta gaagagtata tcaaacacga actttatgat aaggaacaaa
     6961 gttttgttat aggagatcgt gagagtgata tgatcttggc ttcaaattta ggcgtgcgtg
     7021 gtttaaaata cggcgaactt tcttggaaag aaatagaaaa tgaaatttta agttctttta
     7081 gaagcgcgag ttatcaaaga actactaaag aaacagatat aaaagtaaag gtatgcttaa
     7141 atgggggtaa ggttagcatt aaaacaggta ttgatttttt tgatcacatg ttagagcaaa
     7201 tcgctgtaca tggaggtata gggcttgaaa tttcttgtaa aggagatttg gaaatcgatg
     7261 agcatcatag cgttgaagat gtagccttag cacttggagc ttgtatcaaa aaagctttag
     7321 gggataaaat cggcattgca agatatggtt ttgctttacc tatggatgag tgtttggcaa
     7381 gttgtgcaat ggatttttgc aatcgtcccc atttagtcta taaagccaaa tttaaaaaat
     7441 ctcatttagg ggctttaagc acagaaatga tcgagcactt tttttattct ttaagctatg
     7501 ctatgggcgt gagtttgcat ttaaaagtta aaggcaaaaa cgatcatcat aaagccgaag
     7561 ggctttttaa agcctttgca aaagctttga aaatggcagt aaaaatagaa agtgaaaatt
     7621 tagccagctc taaaggagtg atatgaaaat catcatcatc gatacagcct gtgcgaattt
     7681 agcatctttg aaattttgtc tagatagatt aggttttaat gcaactatca gtagggattt
     7741 aaaagagctt gaaagtgcgg ataagctttt tttacctgga gtgggtaccg caaaagaagc
     7801 aatgaaaaat ttagaacaat ttaatcttat tgattttatt caaaatacca aaaaaccttt
     7861 gcttggtatt tgtttaggta tgcaaatttt aggaaatttt tctgaagaat taaatcaaga
     7921 aaccttaaaa ctcatagatt ttacaactca aaaatttaaa gctaaagaag gctttacttt
     7981 tccacatatg ggatggaatg aagtttatag ctctcatgct ttgtttaaag gcttagaagg
     8041 ggcttatttt tattttgtgc atagttattg tgtaggactt gggaaataca ctatagcaga
     8101 ttgtgagtat tcgcaaaaat ttagcgcaag cgtaatgaaa gataattttt acggagtgca
     8161 atttcaccct gaaagaagta gcgaggctgg ggaaatttta atttcaaatt ttattaagga
     8221 tataggatga ctcaaatcat acccgcactc gatcttatag atggcgaagt ggtgcgtctt
     8281 gtaaaagggg attacgaaca aaaaaaagta tataaataca atcccttaaa gaaatttaaa
     8341 gaatacgaaa aagcaggagc gaaagaactt catcttgtag atcttacagg tgcaaaagat
     8401 cctagcaaaa gacaatttgc tttgatagaa aaattagcca aagaagtcag tgtcaatttg
     8461 caagtaggtg gaggtatacg ctctaaagaa gaagttaaag ctttgcttga ttgtggagta
     8521 aaaagagtag ttataggatc tatggcaatt aaagatgcga ctttatgtct tgaaatttta
     8581 aaagaatttg gtagtgaagc tatagtttta gccttagata caattttaaa agaagattat
     8641 gttgtggctg taaatgcttg gcaagaagca agcgataaaa agcttatgga agttttagat
     8701 ttttatagca ataaaggctt aaaacacata ctttgcacag atatttcaaa agatggtacc
     8761 atgcaaggag taaatgtaag actttacaaa cttatccatg aaatttttcc taatatttgc
     8821 attcaggcaa gtggtggagt agcgagctta aaagaccttg aaaacttaaa aggaatttgt
     8881 agtggggtta tcgtaggaaa agctttatta gacggagttt ttagcgtaga agaagggata
     8941 agatgtctag caaattaagc tacaaagaac ttactttaga aattttaaaa caaagtgaca
     9001 gacctttaag tgttaatgaa atttggcaaa aagctcttga acaaggctta gataaaaagc
     9061 tttctagcat aggacaaact ccaattgcta ctttaggggc taggatatat gttgatataa
     9121 aagaattgca acacaattct ttgtttatca aagcttccca aaaacctaca actttttggc
     9181 taaaagaaag agaaaatgaa cttttaaagc ttgataataa aaatgaaatt actaacgaaa
     9241 aacaagaaaa aaataaattt catgaaagag atttacaccc cttgcttgta aaatttttat
     9301 atgaaaattt agattttaat ttaaattgca aaacaattta ccatgaacaa agcaaaaagg
     9361 gtaaaggtgg ggaagataag tggaattatc ctgatattgt aggggtttat tttccttatg
     9421 atgattatga aaaagagacc ataacacttt tagaaaatat caaacaaaat agttataagc
     9481 ttttttcttt tgaacttaaa attgctttaa atttttcaaa tttaaaagaa tgctattttc
     9541 aagctgtaag caattctagc tgggcaaatg aaggctattt ggttgtttta caagaaattg
     9601 atagcgaagt tttaagtgag ttaagacgct taaatcaaag ttttggcata ggagtgataa
     9661 aacttgaaaa agatatttca aattctcaaa ttttaattag tgcaaaagaa aaagaacttg
     9721 atattcaaac actaaatatg ctgatcaata aaaatccaaa ttttaaagaa tttattgatg
     9781 atataaacaa acaaattaaa gtgggcaaag aagcaaaaat tcaagctaat tttgatgaaa
     9841 ttaaaagcga tgaagaaatg gaaaaatatc ttaaagaaaa atgtattttg gagaaataaa
     9901 tgcttacaaa acgcataatt gcatgtttag atgtcaaaga tggcagagta gtaaaaggaa
     9961 cacaatttaa aaaccataaa gatatgggag atatcataga gcttgctagg tattattctc
    10021 aaaatggtat tgatgagctt gttttttatg atattgctgc aagtgctaga aaagaacgca
    10081 tatcaagaga atgggtaagt gaagtagcaa aaaatatcaa tatttctttt tgtgttgcag
    10141 ggggtattaa aagcgaagaa gatgcagctg aacttttggc taatggggca gataaaattt
    10201 ctatcaattc tcctgcttta aatgatccaa gcctaatcac acgccttgct aaaagctttg
    10261 gcgtgcaatg cgtagtagta gggattgata gttttaaaga tgaaaatgga aatttaaaag
    10321 tatttcaata cacaggggat gaaaaaacaa gtaaacatag tggaaaaagc actttagaat
    10381 gggttaaaaa agtgcaagat ctaggtgcag gcgaaattgt tttaaatatg atgaatcaag
    10441 atggtgttaa aaatggctat gatttagaac aattagaagc tgtatataaa atttgtaaag
    10501 tacctttaat cgcaagtggg ggagcgggaa aaatggaaca ttttttagaa gcttttaaac
    10561 taggtataga tggagcttta gctgcttctg tttttcatca aaaacttata gacattaaag
    10621 aattaaaaat ttatcttaaa aatcaaggct taagtataag gatataatat gcaaaatttc
    10681 aaagaactta atgaaaaaat cgcttggcaa aaagtggata atcttttacc tgtcatcatc
    10741 caagatgcaa aaacttgcga agttttaatg ctaggcttta tgaataatga agccttagaa
    10801 aaaagcttag aaagtggcaa agtagtcttt ttttcacgca caaaacagcg tctttggatg
    10861 aagggtgaag aaagtggaaa tttcttaaat atcatagatt taagcttaga ttgtgataat
    10921 gacacgcttt taattttagc aaatcctgta gggcctactt gtcatacggg cgatatttct
    10981 tgttttgaaa aaatttctaa aaatgcagat tttgtttttc tagccagact tgaaaaactt
    11041 attaatgcac gcaaaaatgc cgatgaaaat acttcttata cagcaaaact tttcaaaagt
    11101 ggtacaaaac gcatcgcaca aaaagttggt gaagaaggcg tagaaacagc tttagcagcg
    11161 acagtaaaag ataaagaaga gcttatttgt gaagcagcgg atttaatgta tcatttaagt
    11221 gttttacttg cagatgcaaa tcttagtttc tcagatgtga tttcaaaatt aaaagaaaga
    11281 cataaagctt aaagctttat gtaaaataaa tttatatcaa tgcaaggctt cattaagttt
    11341 gactgctttt ttatttaaag ctactatcat agcaccactt atagaatctt gacggaaatg
    11401 tagcccattt aaacctttaa gctctaagcc tttgtaaatt tctttatcaa aattaaaata
    11461 aggattaagt ttagcaagtt cttcggcatc tttgagtaaa aatttcgttc cttctagcac
    11521 tgcaatacct gcatcaacta tacaattatc ccctaaagga attcctgtca ctgaattagc
    11581 ccctaaaaga caagccttgc ctacgcttat agcattgcca cttgttccac ttaaaacacc
    11641 taaaatcgaa gctccgccac ctacatcaga accttctcct actatagcac ttgaactaat
    11701 acgcccttca accatacaag ctcctgttgt acctgcatta aaattcacat aacttgcccc
    11761 tggcatgatg gttgttcctg ctgctaaaga cgcacccatt cttactttag aactttctaa
    11821 aattcttgta ttatcctcag ggataatatg tgctaaaaat cttgggaatt tatcaacaaa
    11881 atcgattttt ggatattgat tgctcatttt taaacgcatt tcatttgctc ttaaatactc
    11941 aagctcgata ggcttatcat cactccaagc tacattgctt aaaagtccaa aagctccatt
    12001 taaattgata cttcttaaag gtactttttt agtagaaagc aaataaagtt ttagataaat
    12061 actttctaca cttaaaggtt ctttatcttc aaaaagacaa acaaaagaaa attcatcgtc
    12121 tttaaattta tctttgataa tctttaataa atcaatattt tgatgcccat cttcttctaa
    12181 aaaaggttta aaacaagaaa gtgcaaaatc aatatcttct aatttcaaag tttgcacaaa
    12241 ctcactcgca ttaaaatcaa tctccacgcc cctttgcata aaagcttcaa gcatgattgc
    12301 cgctgagcca aaattttgct catagttaat caaagcaaaa cttgcttgta agattttatt
    12361 tttatttaac tgtcctctat caagccttgc tataccaaaa gctttaggtt ttttatagcc
    12421 acttttttgc tcgatttgtt tgattaaaag taaaaaatct tctttagtat taatcatttt
    12481 cttttcctta tccacttaat ttttaatgcg aacacgcact ttttccattc atcacaggtt
    12541 gtatagcaga attatccgca ccaccttcat tgttaatttt ttctataaag ctccaaattt
    12601 tttcagccgc cattaaataa cgctttgaac tcacactttc agggtgataa aaactcacag
    12661 gcttgccttc atctccacct tctcttacta tcatttctat aggaatttgt gctaagactt
    12721 cacttttata ggcttttgcc atatcctcag ccgttccttt gccaaaaata tcatactctt
    12781 taccgttatc aggacataaa aatccactca tattttcaat cacacccgct ataggaatgt
    12841 gaagtttatt aaacatatct aaagctcttt tactatcgtc taaagatacg gtttgaggcg
    12901 tacttacaca aactcctgca gtaataggaa tgctttgtgc agaagtaatt tgcgcatcgc
    12961 ctgttcctgg aggcatatcc aaaaacaata catcaagctc aggccaaatt acatcagcta
    13021 aaagttgctc aattgctttc atgatcatag ctccacgcca cataaggcct tgaccctctt
    13081 cgatcaaaac ccccatactc atcatataaa caccatgagt taaaataggc tttaatctct
    13141 gccctactac ttcaggctga gttttggttt cacctagcat tcttggaata tttggcccat
    13201 aaatatccgc gtctaaaata cctactcttt ttcccatttt agccatggaa attgctaaat
    13261 ttactgtagt tgtagattta cccacaccac cttttccact tgaaaccatg atgaaatttt
    13321 ttacttgtgg agcgatattt tttccacttc ttgaattact tttttcttca ggaatttttg
    13381 gagtaatgat attaagttca atatttttta aagccaaact cgataaagct tcaatagtat
    13441 ttttacgaat ttcattagct acttcaggat ttgctgaaac gatttctata tcaatgaata
    13501 caccatcatc ttgaatttta atatctttta caaagttaaa actcactata tccttttcaa
    13561 aaccaggata ttttacagtt tttaatttct ctaaaatttg ttctttcata ttttttcctt
    13621 gtcttttaaa aaaatcaatt ttactaataa aatga
//
LOCUS       DARBBO010000042        13499 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.042, whole genome shotgun sequence.
ACCESSION   DARBBO010000042 DARBBO010000000
VERSION     DARBBO010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13499)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13499)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13499
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.042"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            40..324
                     /gene="gatC"
                     /locus_tag="SB854_000982"
     CDS             40..324
                     /gene="gatC"
                     /locus_tag="SB854_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEG0956985.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIAQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            393..956
                     /locus_tag="SB854_000983"
     CDS             393..956
                     /locus_tag="SB854_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEG0956986.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIVCLLVGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHANEKLQDIVSDLNNTQKGE"
     gene            958..1431
                     /locus_tag="SB854_000984"
     CDS             958..1431
                     /locus_tag="SB854_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor"
                     /protein_id="HEG0956987.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            1432..2937
                     /gene="lysS"
                     /locus_tag="SB854_000985"
     CDS             1432..2937
                     /gene="lysS"
                     /locus_tag="SB854_000985"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEG0956988.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESVNAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFSKDSVGEELYAIL
                     KKNLEVGDIVLAKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNAEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLVVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMIDFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKVDGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            2934..4178
                     /locus_tag="SB854_000986"
     CDS             2934..4178
                     /locus_tag="SB854_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEG0956989.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEVGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDVNNEKLQ
                     KNIKQELKKLASNFIIYERAMF"
     gene            4175..4720
                     /locus_tag="SB854_000987"
     CDS             4175..4720
                     /locus_tag="SB854_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HEG0956990.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            4734..5570
                     /locus_tag="SB854_000988"
     CDS             4734..5570
                     /locus_tag="SB854_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HEG0956991.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LVNGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSANTTPQASTPKQEVTQTAKSKEE
                     AKKQTAVKKEKESAKQTPKKEQNANDLFKNVDAKPVHPSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGSKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            5567..6355
                     /locus_tag="SB854_000989"
     CDS             5567..6355
                     /locus_tag="SB854_000989"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEG0956992.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVINSTSAGLKDENLPCDRELLDRILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIQDKREMIKNAMQQALILK"
     gene            complement(6430..7329)
                     /locus_tag="SB854_000990"
     CDS             complement(6430..7329)
                     /locus_tag="SB854_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0956993.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPID
                     SGVSIALVPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNVQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENAPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            7419..8234
                     /locus_tag="SB854_000991"
     CDS             7419..8234
                     /locus_tag="SB854_000991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEG0956994.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            8304..9086
                     /locus_tag="SB854_000992"
     CDS             8304..9086
                     /locus_tag="SB854_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HEG0956995.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            9070..11061
                     /locus_tag="SB854_000993"
     CDS             9070..11061
                     /locus_tag="SB854_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HEG0956996.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            11054..11779
                     /locus_tag="SB854_000994"
     CDS             11054..11779
                     /locus_tag="SB854_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HEG0956997.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            11807..>13499
                     /locus_tag="SB854_000995"
     CDS             11807..>13499
                     /locus_tag="SB854_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG0956998.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKNKLNTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSIQNAQICILNFFKSGFISKQDLLKALKILEKISK
                     NTEMLDFISQEKVQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKFQN
                     LEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWDKK
                     EWQNILESSHFNADLKEFIDKLDKSVNIEDFIKDKPLIQNIALCELKNFSSAKNKISA
                     LIKKIEIKSHLDFLKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQSLT
                     QKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENLVE
                     KIDFLCVSAKMASDFYKGLAPKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKKEL
                     HLELKNILSKYEMQNRLIKENKQGVSEENQKLLLELQKQNILLKEAQDEISNSIVKLK
                     NIDNGIDNLVLLLAKKLKERLIDEFKYLKNNAQKLNLSRILNIVDITTKDGINDIL"
BASE COUNT         4748 a         1600 c         2601 g         4550 t
ORIGIN      
        1 aattttcaaa attttaactt ttttattaag gtttaagaaa tgcaaataga tgagaaatta
       61 ttaagcaagc ttgaaaaatt aagtgcttta caaataacaa aaaacagaaa tgaaaccatt
      121 gcacagttaa gtgaaattgt gaattttgtt gaaaaattaa acgaacttga tttagattcc
      181 caagagatta ctgtgagtac tataaaaggt ggagctcctt tgaggattga tgagataaga
      241 aatagcaatg ttattgatga ggttttagat tgtgctccaa aaaaacaaga acattttttt
      301 gttgttccta aaatcataga atgattaact tagcatttag tgcttatttg tagaataaat
      361 ttaaaacaaa aaaaaatcag agagtgattg aaatgaattt ttattggttt gatgctttta
      421 ttttaggatt taccttgctt ttagggctta agggtattat caatggtttg ataaaagaaa
      481 tttttggact tttgggtatt attggtggtg tttttattgc ttcaaaatat gcaactcaag
      541 cagctgaatt tatacaaagt actttttata agatagaaaa tcaaagctta gctggatttg
      601 ctggattttt ggccatatta attatttttt ggatagtttg tttattggtg ggtaattttc
      661 tttctaagtt gattaaatta agtggcctag gttttttaga tcgtattggt ggctttatat
      721 ttggcggagc aaaaatcttt ttaatttttg caattttggt tttttgtgta gcaagaatcg
      781 attttttaaa tgataaatta gataattttg ctaaaaatag ctatactttg aatttgctta
      841 aagaaactgg atcttttatt atgaatcaac ctttaacaga aaatagtcta gatcatgcta
      901 atgaaaagtt gcaagatatt gtaagtgatt taaacaatac tcaaaaaggg gagtgatatg
      961 ctgatagaaa atgtggaata tgatgtttta cttgagaggt ttaaaaaaat attaagacaa
     1021 ggcggactta aatatactaa gcaaagagaa gtgcttttaa aaactcttta tcacagtgat
     1081 actcattaca cacccgaaag tttatatatg gaaatcaaac aagctgaacc tgatttaaat
     1141 gtaggaattg caactgttta tcgtacttta aatttgcttg aagaagcaga aatggtaact
     1201 tccatttctt ttggttcggc aggtaaaaaa tacgagcttg ccaataaacc tcaccatgat
     1261 catatgatat gtaaaaattg cggaaaaatt atagaatttg aaaatcctat tatagaaaga
     1321 cagcaagcct tgattgcaaa agaacatggt tttaaactta cagggcattt gatgcagctt
     1381 tatggtgttt gtggtgattg taataatcaa aaagcaaagg taaaaatata aatgtttgat
     1441 aatattttag agcagcaaag aatagaaaaa gctaaggaat taaaaaattt agggatcaat
     1501 ccttatcctc attttttaga aaaagaaatg tctttaaaga cttttaagga taaattttct
     1561 tatattttag agcaagttga aaaaagagat gaaagtgtca atgctgttgt tgcaggacgt
     1621 ttgaaacttt tgcgtatagc tgggaaatcg atttttgcaa acattgaaga tgaggacaca
     1681 aatttacaaa tttattttag taaagatagc gtaggtgaag aactttatgc gattttgaaa
     1741 aagaatttag aagtaggtga tattgttttg gctaaaggtt ttccttttgt aactaaaaca
     1801 ggtgagttta gtttgcatgc aagtgaagta aaactcgcta caaaagctat tgttccttta
     1861 cctgaaaaat atcatggatt aacagatatt gaacaaagat atcgtaaacg ttatgttgat
     1921 atgataatga atgcagaagt tagaaaagat tttttagtgc gttctaaagt ggtgagtttg
     1981 attcgtcatt tttttgaaaa taaaggcttt ttagaagtag aaactcctat gatgcatccg
     2041 attgcaggtg gagcaaacgc taagcctttt gtaacttttc acaattcttt aggcgtagaa
     2101 agatttttaa gaattgctcc agaactttat cttaaaagac ttgtagtggg tggttttgag
     2161 gcagtttttg aaatcaatcg ttgttttaga aacgaaggta tggatttaac tcataatccc
     2221 gaatttacaa ctatagaatt ttattgggct tatcataatt ataaagattt aatggattta
     2281 actgaagaac tttttgcttt gcttttagat aaacttaatt tgggaaaaac aatagaattt
     2341 gatggaaaaa tgatagattt ttctaaacct tttgaaagaa ttacttacaa agatgcactt
     2401 tgtaaatatg gtggtttgga tagggattta atcgaagata aggaaaaaat tcttactaaa
     2461 ttaaaagtag atggttttga agcgaatgaa aagcttgaac ttggacattt acaagctgaa
     2521 ctttttgata attatgtgga agaaaaattg atcaatccta cttttgtgat tgattttcct
     2581 atttccataa gtcctttatc aagacgtagc gatgaggatt ctcagattgc tgagagattt
     2641 gagttgttta tttgtggaag agaattggca aatggtttta atgagcttaa tgatcctctt
     2701 gatcaatatg agagattttt aaaacaaatt gaagctaaaa atgcaggcga tgaagaggct
     2761 tgcgaaatgg atgaagattt tgtaaatgct ttgggttatg gaatgcctcc aacggcaggg
     2821 cagggtatag gcatagatag acttgttatg cttttgacaa ataaaaaatc tattcgagat
     2881 gtgatattgt ttcctgcaat gcgtccatta aaatcagaac taaaggagaa agaatgagtt
     2941 tagaaatgtt tgataaagaa atttttgatt taacaaacaa agagttagag cgtcaatgcg
     3001 aaggtcttga aatgatagcg agtgaaaatt tcactttacc tgaagtaatg gaagttatgg
     3061 gaagtatctt gacgaacaaa tacgcagaag gttatccagg taaaagatat tatggtggtt
     3121 gtgaatttgt tgatgagatt gaaactctag ctattgaaag atgtaaaaaa ctttttaatt
     3181 gtaaatttgc taatgttcag cctaattcag gttctcaagc taatcaaggt gtttatgcgg
     3241 ctttgattaa tccaggtgat aaaattttag gaatggattt aagtcatggt ggacatttaa
     3301 ctcatggtgc aaaagtaagt tcttcgggta aaatgtacga aagttgtttt tacggcgtag
     3361 aacttgatgg aagaattgat tatgaaaaag taagagaaat tgctaaaaaa gaaaagccaa
     3421 aattaatagt ttgtggagct agtgcttatg caagagtgat tgattttgct aaatttagag
     3481 aaatcgctga tgaagtaggc gcctatcttt ttgctgatat agcacatatt gcaggtcttg
     3541 ttgtagcagg cgaacatcca agtccttttc cacacgctca tgtagtaagt tcaactacgc
     3601 ataaaacttt gcgtggccca agaggtggta ttattatgac aaatgatgaa gagcttgcta
     3661 aaaaaattaa ttctgccatt tttccaggta ttcaaggtgg tcctttgatg catgtaattg
     3721 ctgcaaaagc agtaggattt aaatttaatc ttagcgatga gtggaaagtt tatgcaaaac
     3781 aagtaagaac caatgctcaa gttttagcta atgttttaat ggatagaaaa tttaaacttg
     3841 ttagcgatgg aacggataat caccttgttt taatgagttt tttagatcgt gagtttagcg
     3901 gaaaagatgc agatttagct cttggaaatg caggtattac tgcaaataaa aataccgttc
     3961 caggagagat tagaagtcct tttatcacaa gtggattaag acttggaact ccagccctta
     4021 ctgccagagg ttttaaagaa aaagaaatgg aaattgtgtc aaattatatt gcagatattt
     4081 tagatgatgt taataatgaa aaattacaaa agaatattaa acaagaatta aaaaaacttg
     4141 caagtaattt tattatttat gaaagggcta tgttttgatt tcaccaatgg atatgtcgct
     4201 aattaaaata attggcgatc attattatat aagacgcgat aaaattgtaa ataaaattac
     4261 acatagaggt cgcttatttt ttgataaatt tgaaagagtt gatgctcctt taaatttaaa
     4321 tgtcatgaga gaacacgctg ctaaaaaaat tgttgtcgct catgatttaa taacaaaaga
     4381 taataaagta gaaaatattg tctttgatta taatggtttt aatgctgaaa gattttatca
     4441 ccgtgcacaa cttattttaa gagaagaagg ttttataaat ttcacagcct ataagactaa
     4501 aactccagga catttacatc tttatattca taaaggacat acggcgttaa acgaaggtta
     4561 ttctttagcg tctaaacttt caatgatgtt tgcaagtaaa atgccagtag aatggaaggt
     4621 gtttcctagc atggatgtac ctagggaatt taatatttta atattgcctt atgaggttta
     4681 tcaaaaagaa cgaggaagtt cttggtctaa gcatatgtaa gaaaggacaa attatggaaa
     4741 atcaaaaaaa tgaatttgat gatattattt tagaaaaaag taataaaagt gaaaaagtaa
     4801 aaaaaattct tttacgagtt attgctttag ttattttgtt tttagctatt atgatagtta
     4861 tgaagcttgt taatggtagt ggtgatgaaa atacgcaaaa tcaaagtgta ttgccaagtg
     4921 aacctatagc aactcaagac aataacaatg atacttcttt tgaaagtatg ccaattacag
     4981 ataatacttc agcagaagat caatttgagg cattaagaaa acaatttcaa gatgaacaaa
     5041 atacaactca aaatacaaca acctctagtt caaataacaa tgatactaca aattttgcta
     5101 tgcctgatca agaagttcca gcagaaccaa cagcaactac ttcagcaaat accactccac
     5161 aagcaagtac tcctaaacaa gaagtaacac aaactgcaaa atctaaagaa gaagcaaaaa
     5221 aacaaacagc tgtaaaaaaa gaaaaagaaa gtgcaaaaca aacccctaaa aaagaacaaa
     5281 atgcaaatga tttatttaaa aatgttgatg ctaaacctgt acatccaagt ggtttagcat
     5341 cgggtattta tgtgcaaatt ttctcagtaa gtaatttgga tcaaaaatca aaagaacttg
     5401 cttctgtaaa gcaaaaaggt tatgattata aactttataa aactacagtt ggaagtaaag
     5461 aaattaccaa ggttttaata ggaccatttg aaaaggcaga tattgcagca gaacttgcta
     5521 aaatccgtaa ggatattgca aaagatgctt tttcttttac tttaaaatga aatttttagc
     5581 agttataggc gatcctattt ctcactctaa atcgcctaga atgcataata atgctattaa
     5641 agccttaggg cttgatagca tttatacacg ctatcattta agaaatgcta actgtttaag
     5701 agaagatttt tttaaattag gacttagtgg agctaatatt actttgcctt ttaaggaaaa
     5761 agctttagat attgctgatg tgaaggatga ttttgctaga aatattggct ctgcaaatac
     5821 tttatgctta aaagaagata aaatttacgc ttataatact gatgctttag gttttttaga
     5881 agctattaag gattttgata atataaaaaa agctttgatt ttgggtgctg gaggtacagc
     5941 tttggcgctt gcttatgcat taaaacaaaa aggcgtagaa gtgtatatag ctaatcgtag
     6001 taaagaaaga tttaaagatt ttttagctta tccaacttat ctttataaaa acttgcaaga
     6061 ttttgacttt gatttggtta taaattcaac ttctgctgga ttaaaagatg aaaatttacc
     6121 ttgtgatagg gagcttttag atagaatttt acctaaagct aaatttgctt ttgaggtaat
     6181 ttatggcaga gaaacacctt tttatagatt gtgtaaagag tatcatttaa aaattaaaga
     6241 tggacttgat atgcttttat ggcaaggagt ttttgctttt gaactttttt ttgaaataca
     6301 agataaaaga gagatgataa aaaatgcaat gcaacaggca ttgattttaa agtagaatga
     6361 tagttatttt tcttgtataa gaaaatctta ttttttgtgt gagaaagttt aattttccca
     6421 caagttttat cattcaaata tttctacccc atcttgattt ttactttgat tattttgatt
     6481 tgttgaagat ggatttgtag gaatattttg tgtaggcgcg ttttcaattg tattattttg
     6541 attagaattt gtttgaggta agctttcttc aaaggtagca tcgccatcaa aactattaaa
     6601 accactgttt gtattaggta tagttttgcc tatgtctgtt gcttttggta gattgttata
     6661 aagtgtattt aatgtatttt tataaaaagc taaaaaactt ttatcaattt caaaagcagg
     6721 ttgctctaaa cctttattga gttgagttgg tacggtagag atagtagttt taaacatatt
     6781 aaccccatca tcatttttaa taggatagtt aagcgcaact aaagaatcta gtttagtgct
     6841 acttgaaaga ttggttgaat tttgtggatt gtgtgcatct ataaaatcta ttttaccttt
     6901 aaaatttata cctaaattgg attttacata atctccactc ataaaattgc ttgttttttg
     6961 tacatttttt tcttccgtat aaatactgat tgaactttta agagtgtagt ctggattagt
     7021 agtaactatt ttatagcctt ttagttgagc gatggttttg atctgctctt ctaaattttg
     7081 ttttaaaaga tcaatttctt tttctatgcg aattttaagc actgaatttt caaaataatc
     7141 agaataattg ttattttgtt ctatattaat aggcacaaga gcaatgctta ctccagaatc
     7201 aataggttca acctttgttg gaacttgggg tttaaaattt ggcatagaaa cattgacaaa
     7261 attactactt gtacccccac aagctgctaa aattaacata ctactagcaa gtaaaatata
     7321 ttttttcatt ttttaccttt atttaatgtg tttgtgttaa ttatagcaag ttaaagtttt
     7381 tttgttatat ttttataaaa gaaaattagg aaagatatat ggaattttgg cagcatattt
     7441 attcaaattt taatgttata gcttttagca tctttggttt aaaggtgcat tggtatggca
     7501 ttatgtatgt tatagctttg cttttggctt tgcttttggc taaatttttt gtaagaaaat
     7561 ttcaactaga cattaatgaa aaacatttgg atagttattt tatatgggtt gaaatagggg
     7621 ttattttagg tgcaagactt ggatatattt tgatttatga tgcaaatact atgtattata
     7681 ttactcatcc ttggcaaatt tttaatcctt atattaatgg tgaatttgta ggtattcgag
     7741 gtatgagtta tcatggagca attataggat ttttgatagc tactttattg ttttgtaaaa
     7801 aatataaaac aaatccttgg atttttcttg atttggttgc tttaagtgtt ccattggctt
     7861 atgtttttgg tcgtatagga aattttttaa atcaagagct ttttggtcgc attacaaatg
     7921 tgccttgggg aatttatgtt gatggagtat tgcgccatcc atcgcaactt tatgaagcat
     7981 ttttagaagg tattgttgtt tttattatag tttatttagc aagatttaag caaagctttc
     8041 aaggggaatt gattcttgtg tatgctggtg cttattcatt ggcaagattt atatgtgaat
     8101 tttatcgcga gcctgatttt ggtataggtt ttgttttatg gggtatgagt atggggcaaa
     8161 ttttaagttt tataatgttt ataacagctt tgttagttta tatttgtata aagtttaaaa
     8221 aagtaaatat ttaatctatc ttaaagactt ttgtaatata atgaaatgga ttttttttaa
     8281 tttcttttta caaaggagta aagatgcgtg agcttatcga aggttatttg ggtaagagca
     8341 ttgagggcaa aaaaagtaaa atgcctgcga aattagactt tatccaaagt gcttcagggc
     8401 tttttttagg tctttttatg tgggtgcata tgctttttgt ttctacaatt ttagtcagtg
     8461 aggatttttt taattctgta gtgcattttt tagaattaaa atttgtttac gataatcctg
     8521 ttatgagtta tcttacttca tttttagccg cctgtgtttt agtggttttt ttcgttcatg
     8581 ctttacttgc aatgagaaaa tttcctatta attaccgtca gtatcaaata ctaagaacac
     8641 acagtaaaaa aatgaatcac agcgatactt cgttatggtg ggttcaagct tttacaggtt
     8701 ttattatgtt tttcttaggt tctgctcatc ttatttttat tgtaaccaat gcagataaaa
     8761 tcagcggcga tatgtcagga gatagggttg taagtcattt tatgtggctt ttttatgctg
     8821 ttcttttagt ctgtgttgaa cttcatggaa gtatagggct ttatagactt tgtgttaaat
     8881 ggggttggtt tgaaggaaaa aatgtaaaag aaagtcgcaa aaagcttaaa actgctaaat
     8941 ggataatcag tattttcttc ctagttttag gtgtgttaag tcttgcagca tttataaaaa
     9001 taggttatga aaactaccaa aatcaaaccc aaactactgc gatgataaaa aactacaatg
     9061 gagcaaatta tgaatataca atatagtgat gctttagtaa taggtggagg attagcaggt
     9121 cttagagcgg ctattgaagt agcaaagagt ggccaaagtg taacactttt aagtatttgt
     9181 ccagtgaagc gttctcactc tgcagcggtg caaggaggta tgcaggcaag tttagcaaat
     9241 ggggcaaaag gtgagggtga taatgaagat cttcactttg cagatacagt aaaaggaagt
     9301 gattggggct gtgatcaaga agtagcaaga atgtttgctc aaactgcgcc aaaagcagtg
     9361 cgtgagcttg cggcttgggg tgtgccttgg actagagtta ctaaaggtcc aagaactgtt
     9421 gtaatcaatg cacaaaaaac tgtgattgaa gaaaaagaag aagcgcacgg gcttattaat
     9481 gctagagatt ttggtggaac taaaaaatgg agaacttgct atatcgcaga tgcaacaggg
     9541 cattgtatgc tttatggtgt agcaaatgaa gctattaaac atcaagtaaa aattattgat
     9601 agaatggaag cagtaagaat tatccatgat ggtaaaaaat gcttaggtgt gatcgctaga
     9661 gatttaacta atggacaact cattgcttat attgcaagag gaaccatgat agcaacaggg
     9721 ggctatggta gaatttataa acaaactaca aatgcggtaa tttgtgaagg aacaggtgca
     9781 gccatcgctc ttgaaacagg gctttgcaga ctttcaaata tggaagcagt gcaatttcat
     9841 ccaactccta ttgtgccaag cggtattttg cttactgagg gctgtcgtgg tgatggtgga
     9901 attttacgcg atgtggatgg atatcgtttt atgcctgatt atgaaccaga gaaaaaagaa
     9961 cttgcaagcc gtgatgtggt aagtcgtaga atgatggaac atattcgtaa aggcaaaggt
    10021 gtaaaaagcc cttatgggga tcatttatgg cttgatattt ctatacttgg aagagctcat
    10081 gtggaaaaaa atctccgcga tgtacaagat atttgtaaaa cttttaatgg tattgatcca
    10141 gcagatgagg gtccaaaagg ttgggcgcca gttcttccaa tgcagcatta ttctatgggt
    10201 ggaattagaa ctaaaccaac gggtgaaagt caatggttaa acggactttt tgcttgtgga
    10261 gaagcagctt gctgggatat gcacggattt aatcgtttag gtggaaattc atgtgctgaa
    10321 actgttgtag caggtatgat agtgggagat tattttgcag attattgtaa aaataatggt
    10381 gaagtaattg acacaaatgt agtaaaagac ttcttaacta aagagtatca atatttaaaa
    10441 tctttagtag ataaagaagg taaacataat gtttttgaaa tcaaaaacag aatgaaagaa
    10501 atcatgtggg ataaggtggc catctttaga acaggtgaag gtttgaaaga agcagtagat
    10561 gaacttgaaa aactttataa agattctcaa gacgttaaag tacattgtaa agaacttgat
    10621 tgtgcaaatc cagagcttga agaagcgtat agagtgccaa gaatgttaaa aatagcactt
    10681 tgcgtagctt atggagcgct tttaagaaca gaaagtcgtg gagcgcatta tagggaagat
    10741 tatccaaaaa gagatgattt aaattggatg aaaagaacca atactttttg ggtagaaggc
    10801 gaaaccttac cacgcataga atacgaagag cttgatatta tgaaaatgga aattccacca
    10861 gcattccgtg gatacggagc caaaggaaat attatagaaa atcctttaag tgaaaaacgc
    10921 caagctgaag tggatgcaat acgtgaaaaa atggaagctg aaggcaaagg tcgttatgaa
    10981 attcaaaacg ctttaatgcc ttatgaatta caagctaaat ataaagcacc aaaccaaaga
    11041 ataggagttg attatgagta gaaaattgac aataaaggca tttaaatata atcctttaag
    11101 caaaatttct aaaccacatt ttgtgactta cgagcttgaa gaaactcctt ttatgacggt
    11161 ttttgtatgt ttgactttga ttcgtgaaaa aatggatgcg gatctgagtt ttgactttgt
    11221 ttgtcgtgca gggatttgtg gatcttgtgc gatgatgatt aatggagtgc caaaacttgc
    11281 ttgtaaaact ttgactaaag attatcctga tggagtgata gagcttatgc ctatgcccgc
    11341 atttagacat attaaagatt taagcgtgaa tacaggagag tggtttgaag acatgtgtaa
    11401 acgcgttgaa agctgggtgc ataacgaaaa agaaactgat atttctaaac ttgaagaacg
    11461 tattgagccg gaggttgcgg atgaaacttt tgaacttgat cgttgtatag agtgtggaat
    11521 ttgtgtagct tcttgtgcaa ctaaacttat gcgtccaaat ttcatagctg ctacaggact
    11581 tttaagaaca gctagatatt tacaagatcc gcatgaccat agaagtgtgg aagattttta
    11641 tgaattagtg ggcgatgatg atggtgtttt tggttgtatg tcattgcttg cttgcgaaga
    11701 taattgtcct aaagaattac ctttacaaag taaaatcgct tacatgagaa gacaacttgt
    11761 cgctcaaaga aataaataaa tctttcccct ttttaagggg aagattatga aagaattatt
    11821 ccaaaaaatt tggcaaaatg aacttcaatt tttaaatttt gatgctaaat ttcaagataa
    11881 aaacaaactt aatacggccg agtgcgcgat tattttaagt gtcaataaag acaattatga
    11941 aagatatttt ctcttaaaag aatttcaaga gctttgcaaa aaaattgatt taagagtgga
    12001 tatttttagt atacaaaatg ctcaaatttg tattttaaat ttttttaaat caggctttat
    12061 ttcaaagcaa gatttgctta aggctctaaa aattttagaa aaaatttcaa aaaataccga
    12121 aatgcttgat tttatttcac aagaaaaagt tcaaagtata gatcaaaaag ctttatttca
    12181 aaatgatttt aaagaattaa acaccattaa tttagagctt caaaagctaa gttttgatga
    12241 aaatttaaaa tcaagacttc aaaaaacttt ggaaaaattt caaaatttag agtttaatat
    12301 agccatcact ggcgtgatga atgcaggaaa atcaagcctt ttaaatgctc ttttaaaaga
    12361 agatttttta ggggtttcaa acatacctga aacagctaat ttaacagtat taagctatgg
    12421 taagagtgaa gaagcaaaga tatatttttg ggataagaaa gaatggcaaa atatacttga
    12481 aagttcgcac tttaatgcag atttaaaaga atttattgac aagctggata agagtgtaaa
    12541 tatagaggat tttatcaagg ataaaccttt aatacaaaat atcgcacttt gtgaacttaa
    12601 aaatttcagt tcagctaaaa ataaaatttc agctttaatt aaaaaaatag aaattaaaag
    12661 tcatttagat tttttaaaaa ataatatttc catagttgat actccagggc ttgatgatgt
    12721 tgtagttcaa agagaaattg ttacaaatga gtatcttaga gaaagtgatt ttttaattca
    12781 tttaatgaat gcttctcaaa gcttaactca aaaagatgca gactttttag tgcattgtct
    12841 tttaaattca aggctgagta agtttttaat tgttttaact aaagcggatt tgttaagcaa
    12901 aaaggattta gaagaagtca ttgtttatac caaagaaagc ttaaaatcaa gacttgtgga
    12961 tttagatgaa aatttggttg aaaagattga ttttttatgt gtgagtgcta aaatggcaag
    13021 tgatttttat aagggtttag cacctaagga aagtttgcaa aaaagtggta tgcaagaatt
    13081 tgaaaactat ctttttaacg agctttatgc aggagaaaaa agcaagattg ccttaagagc
    13141 ttacaaaaaa gaattacatt tggaacttaa aaatattcta agcaaatatg aaatgcaaaa
    13201 tcgtcttatt aaggagaata aacaaggtgt aagtgaagaa aatcaaaagc ttttacttga
    13261 acttcaaaag caaaatatct tattaaaaga agcacaagat gaaatttcaa attccattgt
    13321 aaaacttaaa aatatagata atggtataga taatcttgtt ttacttttgg ctaaaaaatt
    13381 aaaagaacgc ttgatagatg agtttaaata tttaaaaaat aatgcacaaa agcttaatct
    13441 ttctcgtatt ttaaatatag ttgatattac tacaaaagat gggattaatg atattttaa
//
LOCUS       DARBBO010000043        12741 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.043, whole genome shotgun sequence.
ACCESSION   DARBBO010000043 DARBBO010000000
VERSION     DARBBO010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12741
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.043"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            136..921
                     /locus_tag="SB854_000996"
     CDS             136..921
                     /locus_tag="SB854_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG0956999.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
     gene            994..3819
                     /gene="uvrA"
                     /locus_tag="SB854_000997"
     CDS             994..3819
                     /gene="uvrA"
                     /locus_tag="SB854_000997"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEG0957000.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSASDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLSEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKGLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCGGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGVKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            3824..4267
                     /locus_tag="SB854_000998"
     CDS             3824..4267
                     /locus_tag="SB854_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG0957001.1"
                     /translation="MFNFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFTPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(4343..5230)
                     /locus_tag="SB854_000999"
     CDS             complement(4343..5230)
                     /locus_tag="SB854_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HEG0957002.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGTKGTWIHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFKEPKMSMGVD"
     gene            complement(5227..6591)
                     /locus_tag="SB854_001000"
                     /pseudo
     CDS             complement(5227..6591)
                     /locus_tag="SB854_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MHS family MFS transporter"
     gene            6755..9394
                     /gene="polA"
                     /locus_tag="SB854_001001"
     CDS             6755..9394
                     /gene="polA"
                     /locus_tag="SB854_001001"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEG0957003.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISV
                     SQEGYEADDIIASFVKTCEDRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGVKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENAFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEVIFNHFVIGHNLKYDFKII
                     QNNFGLNLPQKYADTMILAWLKNPSSRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQVGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNALLDKHPAITKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRMLAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEAHLAK
                     SYIEKYFENFTSIKKYFETVKNEAKQNGFITTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            9410..10186
                     /gene="motA"
                     /locus_tag="SB854_001002"
     CDS             9410..10186
                     /gene="motA"
                     /locus_tag="SB854_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEG0957004.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVVHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTSE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            10189..10932
                     /gene="motB"
                     /locus_tag="SB854_001003"
     CDS             10189..10932
                     /gene="motB"
                     /locus_tag="SB854_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEG0957005.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEEAKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQTLENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(10938..12026)
                     /gene="flhB"
                     /locus_tag="SB854_001004"
     CDS             complement(10938..12026)
                     /gene="flhB"
                     /locus_tag="SB854_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HEG0957006.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVAQLTWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTGKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(12145..12741)
                     /locus_tag="SB854_001005"
     CDS             complement(12145..12741)
                     /locus_tag="SB854_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEG0957007.1"
                     /translation="MIVTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKD
                     FTFVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLV
                     ADLTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTML
                     FTNEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
BASE COUNT         4597 a         2115 c         2017 g         4012 t
ORIGIN      
        1 tattttgaaa catttttacg atgcttaaag ttaccaaaaa atattctatt gttataaaaa
       61 aactaagata atacttagct taataagata aaattattcc gtatttgaaa tatttaatat
      121 tttttaggaa aagctatgga aatcacagat ttaccttatc taatcatagg aatcatttca
      181 ggtattgctt ctggactttt tggcattggt ggaggtatga ttatcgttcc ttctatgttc
      241 gcacttggag caagtgctca ccatgctatc ggaatttcag tattgcaaat gatttttgca
      301 gcagtttttg gctcttatat taattataag aaaaaaaatc taaatcttaa agatggtatt
      361 atgataggtt ttggagggct cataggggca agctttagcg gaatgctttt aaaagcttta
      421 agtgatgtag ctcttactag cgtatttttg gcggtaagtt gtatattttt tatcaaatat
      481 gcttttggaa ttaaagaaaa cattgtgcaa aatcaaagaa gcgtttgggt aaagaatgtc
      541 attttattta ttgctggagc ttttactggt atttttgcta tttctttggg aattggtggc
      601 ggacttttaa ttgctccgat tttagcttat tttttaggct atgatagtaa aaaagttgtt
      661 tccttatcct tgttttttgt tatttttgct tcagtctctg gtattatatc tttttcaaat
      721 tctggagtta tagactctga agttattcat aaaggaatac tagtaggtat agcttctatg
      781 gttggagttt ttataggaat taaaatcata gaaaaaatgc atatttcagc tcatagaaaa
      841 attttacttt gcgtatatgc cttatcaata cttggaacca cccactcttt gcttaataag
      901 ctaaatttta taaattttta acttggattt atccaagttc ttttaatatt attatgctaa
      961 aatcttaaat ttatttaatg tttaggaaag actatgaacg ataccataaa aatcattggc
     1021 gcaagagaaa ataacctaaa aaatatccac cttgaaattc ccaaaaacaa actcattgtt
     1081 tttacaggac tgagcggaag tggaaaatca acccttgctt ttggaactct ttatgctgaa
     1141 ggacaacgcc gttatataga aagtttaagt gcttacgcca gacaattttt agataaggta
     1201 ggcaaacctg atgtcgataa aatcgaaggt ttaactccag ccattgccat agatcaaaaa
     1261 actacttcta aaaatccacg ctctactgta ggaaccatca ctgaaattta tgattatcta
     1321 agacttttat acgcaagagt tggcattcaa cattgtcatc aatgcggaca aaaaatctca
     1381 tctatgagtg caagtgatat agtcagtgaa attttaaaat ttccaaaagg tgcaaaaatc
     1441 atcatctacg ccccactcat acgagaaaaa aaaggaactt atgcagattt gcttgaaaat
     1501 ttacgcaaca aaggctatgt aagagctcaa attgatggag ttttggtaag acttgatgaa
     1561 gaaattgaac tagccaaaac caaaaaacac accattaaac ttgtcataga tagacttgaa
     1621 attcaagaag atttactttc tcgccttgca agcgatatag aaaaaggttt acaggaaagc
     1681 tttggagaaa tagaaataga agttttaaat catgaggaaa taaaccttaa taaacactat
     1741 cattttagcg agcattcagc ttgttttgat tgtaaaattt cctttgttcc acttgaacct
     1801 ttaagctttt cttttaattc tccaaaagga gcatgtgaag cttgcgatgg acttggaatt
     1861 cgttatactt tagatatgaa aaaaatcatc gatgaaaatt taagtctcga aaacggtgct
     1921 gttaaaatca tgtatggttt taacaaaagt tattattata aattcctaat cgccttttgc
     1981 gaacaaaatg aaattcctat caaaatacct tttatgcaat taagcgaaga acaaaaacgc
     2041 cttgtattgt atggtaatgc caaaactata gaatttcttt ggaaaagaaa tcgtctaaaa
     2101 cgcacttttg aaggcgtggt taaaatggct tatgaaatgc taaaagatga aaaagattta
     2161 gccgaatata tgagtgaaaa aatttgtaaa gactgcggtg ggcatcgttt aaaacccgaa
     2221 agtttagccg tgaaagtagc caaaaaaggc ttgggtgaaa ttttagatat gagcatagaa
     2281 gatagtacgg ccttttttgc agatgagaaa aatttttctt atttaagcga gcaacaaaaa
     2341 cttatttcta aacctatcct aaaagaaatc aacgaaagat tgtttttctt gtatgatgtg
     2401 gggctaggtt atctttcctt agggcgcgat gcaagaacga ttagtggggg tgaagcacaa
     2461 agaatccgca tagcttcaca aattggcagt ggtttaagcg gagtgatgta tgtcttagat
     2521 gagcctagca taggacttca tgaaagagat actgcaaaac tgattaaaac tttaagaaat
     2581 ttacaacaaa agggcaatac cctaattgtc gtagagcatg ataaaatgac catagaagaa
     2641 gcagatttta ttgtagatat tggtccaaaa gcaggaaaat ttgggggtga ggttgtattt
     2701 agtggaactt ataaagaact tttaaaaagc aaaagcgaaa ctgcacttta tatgaatggt
     2761 aaaaaacaaa tttcacaact tcaaaacaga acacagaaag aatggcttga gcttaaaaat
     2821 gtaaatatta acaatatcca agatttaagc gtaaaatttc ctttgcaaaa tttagtcgct
     2881 ataacaggag tttcaggttc tggaaaaagc tctttgatac ttcaaaccct acttcctttt
     2941 gcacaagagg aattaaaccg tgcgaaaaaa gttaaaaaac ttggcggagt acaaatagaa
     3001 ggacttgaaa aacttgataa agtcatttat cttgatcaaa gcccaattgg gcgcacacca
     3061 cgttcaaatc ctgccaccta tacaggtgct atggatgaaa tcagaaatct ttttgccgcc
     3121 actaaagaag ccaaaatgcg tggttataaa gccggacgct tttcttttaa tgtcaagggt
     3181 ggaagatgtg agaaatgtag cggagatgga gaaatcaaaa tagaaatgca ttttttacct
     3241 gatgttatgg tagtttgtga tacttgcggg ggcaaacgct acaatgatgc cacgctagaa
     3301 attaaatata aaggcaaaaa tatcagtgaa attttaaata tgagtgtttt agaagcgagt
     3361 gaatttttta cagccgttcc taaaatcaaa caaaaattag atactctagt aaaagtgggt
     3421 ttagattatc taactctagg acaaaatgcc accaccttaa gtggaggtga agcacaaaga
     3481 atcaaacttg ctaaagaact aagccgtagc gatacaggaa aaacgcttta tatacttgat
     3541 gaacctacaa caggactgca ttttgaagat gtcaataaac tcatcttagt tttacaacat
     3601 ttggttgatc ttaaaaattc tgtttttgtg atagaacata atttagatgt gattaaaaat
     3661 gctgattata tcatcgatat ggggcctgaa ggtggagtta aaggtggaaa agttataagc
     3721 acaggaagcg tggaaaaagt cgctaaagaa cacaaaaaaa cccgttctta cacaggatat
     3781 tatctagact tagagcttaa aaatacacaa aaatcataat tttatgttta attttttata
     3841 taatgatatt agctatttgg ggcttttcat ggtgtgtttt ctttcaagca cactattacc
     3901 cttagcaagt gaagcctttg ttttaggctt tataaaactt gattttactc cgaatttggt
     3961 acttatcgta gccactttgg gtaatacctt aggaagttta agtacttatg ctttagcgta
     4021 ttttggaaaa gaaaaaattt tagaaaaata ctttagcaaa tccttaaaaa aattagaaaa
     4081 tttcaatgct aattttgcta aatttggaag tatatttgct ttttttactt ttttaccttt
     4141 agtaggagat ctttttgcct tgggacttgg ttttgcgaaa tattcttttt taaaaactat
     4201 attttttatc ttacttggaa aattaagtcg ttatgctttc ataattttca tagcaaactc
     4261 cttttaaaaa cctctctttt ataagtttta aaagctttgc attgtctaca ttttttagaa
     4321 ttttaacaca atttttagtg cttcaatcca cccccatact catttttggt tctttaaaac
     4381 aacgccaact catacctctt gccaaagaac tatcgcaaat aacatcagca taacactcat
     4441 caaaatctgc aatactagaa tctaatgcgt aagctatcgt taaagcatca tgtatccaag
     4501 ttccctttgt accacgtgtt ttagaggcat aatcaatcca aacacctaaa gtttcaacga
     4561 taaaatcaca taaaatattc ttaccttgca actcttttaa atcctcgtgt gttaataaag
     4621 tctgcatggt tgcattataa ggtatgagtg taattttagc tcttgaattt agcactatac
     4681 tagccgcctc aggatcaaaa ccaaaatttg tatctttagt gtaataaggc atatcaaaac
     4741 tgccgcccat aataaaaagc tctttaagat ttatatcaaa atctttaaaa attttcatag
     4801 tcatagcgat atttgtcaaa ggtcctatcg cacaaataga aatttcttta ggatttttac
     4861 tcaccaactc acccatttta aaaatcgcat caggatttat attttctaaa atttcaggac
     4921 tttttatatt ttcccaaaga tattcaagtt taaaattttt aacactttca tcaagtcttt
     4981 gacgccaagc tttacttggt tcttttaggg cttcattcgc tcccaaataa acggggatat
     5041 ttaaatttaa acgtttaaat aaatccttag ccacactata ggcaacaagg cttggaacat
     5101 taccgcaaac tgtgcttagc atttcaagtt tgatttcttt agatgacaaa atcaaagcaa
     5161 gtgctaaacc atcatcagta tttgctcctg caatagcatt gcctatgtcc gtgtctaaga
     5221 taagtctcat atcgcatctt ctattttatt taaatctcta cctctagttt ctggcgcaaa
     5281 aaatgtagtc acaaaaccta tacctgcagt taatacaaaa tatgtcgcga taggccacca
     5341 agtgccataa tacgcaagta aagcagaaac caccataggt gctgttcctc ctgaaagaat
     5401 agaacctagc tccttagcaa aagccatttt tgtataacgg ttttttaccc caaaaagttc
     5461 tacaccccaa gtcgcttgta caccaaaaat ccctaaagat gctaaagaca tacctacaat
     5521 aatagttaaa atcacaataa tttcattttt actatctaaa agcataaaag caggaaaagc
     5581 ataaatcatc aaaagcaaac aaaacattct ataagtaata cgtcttccaa atctatcact
     5641 taaataacct gccaaaggaa taaccaaaaa aacccaccaa tgaagctatc atcactgctg
     5701 tagtagctac tgatttgtct aaaagtaaaa ttttagtcac ataacctaca ataaaacctt
     5761 gcgcaagata agaaggtcca ttttcgccta ttcttaagcc caccatagtc caaaaaagca
     5821 cgacttcttt gccaaaaact tctttcatct tttttcatat gcttttcgtt aattaagacg
     5881 caatttcatc atttcatttt tttgcttttc aaaaacaggg gtttctttga catgaaaacg
     5941 aatatataca gcaaaaagag cgattaaaat acttcccata aaaggaactc tccaacccca
     6001 ttctttaaaa cttgcttcat ccatttgtac catcaaaagc catacaaaag acgcaagcaa
     6061 agtttcgcta tttgatccta aggcaatcac agaagaaaca agccctcttc tcttgctagg
     6121 agcatattct cctagcataa ctgttccacc tgaaagttca gctcctgcgc caaaaccctg
     6181 cataaaacgc aatgcaacca aacaaatagg cgcccaaaca ccaatcactg cataacttgg
     6241 gataaaacct atcagagtag ttgaaattcc cattaaagct attgtagcca tcataacatg
     6301 ttttcttccg tgtttatcac ctaaatgacc aaaaaacaaa gccccaatag gtcttgcaat
     6361 aaaacctatg ccataagtta caaaactaag caaaagtgca attactggag tttgctcagg
     6421 aaaaaatact tctgaaaaaa ttgttgcagc tgctaaacca taaagtgcaa aatctgcata
     6481 ttccatagca gttcccaacc agcaagaaaa aactgccttt ttaaaaactt ttctaccttc
     6541 aggtgtgtta aaattcttat ctgcaattcc atcaatttgc tgatttgtca ttacattttc
     6601 cttacgttat tcatataaaa tttttactct actcgatatt atgactaaaa attgaagtat
     6661 tttcgcttaa atatctttaa atttcgagac attttaagca aaattttgaa ataatataac
     6721 caaaaaatat attttatcaa aagaagaaat tattatgaaa actttaacta ttattgatac
     6781 ttttggattt tttttcagac tttactacgc attaaaaggt tttaaaaatt cacaaggaca
     6841 agctagtgga atgattagcg gttttgcaaa ttttatttat agcttaaaaa atgaatataa
     6901 aagtgattat attgtttttg cattagattc caaaggaaaa acttttcgta gtgaaattga
     6961 tccaaactat aaacaaaatc gcactccacc accgcctgaa cttctagaac aaattccaat
     7021 ttgcataaag atgatagaaa aaatgggttt tataagcgtt tctcaagaag gttatgaagc
     7081 cgatgatatc atcgcttctt ttgtaaaaac ttgtgaagat agggatattt ttgtacgcat
     7141 tatcactcaa gataaagatc tttatcaact cataaaagat ggtaaaacaa gcatttacag
     7201 tcctatttct aaaaacgact atgatgaagc agcgtgttta gaaaaatacg gagtaaaacc
     7261 taatcaaatc agagattttt tagctctttg tggggatagt tctgataata ttccaggcgt
     7321 taaaggtata ggtgtaaaag gagctaaaac cttgcttgat gagtttggta gcatagaggg
     7381 aatttatgaa aatttaaccc tagtacgtaa cgaaagaagt cgtaacttgc ttttagaggg
     7441 taaggaaaat gcatttttaa gcaaaaaatt agcttctttg tatgacaatt tagaagtaca
     7501 aaatctcata gaaaaagcca cttatcctga tgaagaacct cttttaaaaa tacttgaaat
     7561 tttagaacat tacgaactta atactttgct taaaaaactg cgtcaaaatc ctgataataa
     7621 agataaaaat ttaggtttta aagccacttt agtacaagat gaaaacaaac tttttgaaat
     7681 tttaaatacc cttgataaag aaagtattat tgcttttgat accgaaacca caggacttga
     7741 tactaaagaa gcaaaaattg ttggttttag tttttgcatg aatgaaaatg aagcctttta
     7801 cgtgccttta actcataatt atcttggagt aggtgagcaa atctcattgc aaagtgccaa
     7861 aaaagctata gaagtaatct ttaatcattt tgttataggg cacaatctca aatatgattt
     7921 taaaatcatt caaaacaatt ttggattaaa tttacctcaa aaatacgcag atacaatgat
     7981 tttggcatgg cttaaaaatc cttcttcaag agtaaatatg gatgatttag ccttaagact
     8041 ttttaattac gaaaccttgc attttgaaag ccttgttaaa aaaggagaaa attttgcaag
     8101 tgtagaactt gaaaaagctt gtaaatacgc tgcagaagat gcttatatca ctttaagatt
     8161 ttatctttat tttttaaaaa atcttgaaac tcctttatta gaacttgcta aaaactgtga
     8221 atttgatttc attaaaatca ttatgatgat ggaagaaaat ggcataaagc ttgatacaaa
     8281 tgcacttgaa atccttatga aaaaatttga aaatgaaatc aaaaatttaa gtgaagaaat
     8341 ttatactctt tgtgaggata gattcaacct aaattcacct aaacaagtag gtgatatact
     8401 ttttgaaaaa ctcaaactcc caagtggaaa aaaaggtaaa acaggatatt ctaccgatga
     8461 aaaagtttta aatgcacttt tagataaaca tcctgcgatt accaaaattt tagattatag
     8521 ggaacttgcc aagctttatt ccacttattg cgaacctttg ttaaaactag cattaaaaga
     8581 taaaaattca cgcatttatt caagtttttt acaaactgga accgctacag gacgcctttc
     8641 atctaaggat ccaaatttgc aaaatattcc tgcacacgga caatacgcaa aagattataa
     8701 atcttgcttt gtagctaaag atggatttag ttttatctct cttgattatt ctcaaatcga
     8761 actgagaatg cttgcacatt ttagcgaaga tgaaaaactt ttaaatgctt ttgccaacga
     8821 tgaagatata catgcaagaa cagctataat gatttttgga gaaagcaatt atgaaaccag
     8881 aagtgttgca aaaagtataa attttggact tatttatggc atgggctata aaactttaag
     8941 tcaaaattta aaaatagaag ctcatttagc caaatcttac atagaaaaat attttgaaaa
     9001 ttttactagt attaaaaaat attttgaaac agttaaaaat gaagctaaac aaaatggctt
     9061 tatcactact ttaagcggtc gcaagcgtta ttttgatttt gaaaacgcaa aacctatgca
     9121 aattgccatg tatgaaagag aaagcattaa ttcaatctta caaggctcag cggctgatgt
     9181 aatcaaactt gcaatgctag aaatcaataa agaattaaat gaagacaaaa agcttatttt
     9241 gcaaattcac gatgaattaa tttttgaagt aaaagacgat ttgtgtgaaa attttgtaaa
     9301 aaaaactaga gatattatgg aaaatatagt aaaattaaaa gtaaaattaa aaacaagttc
     9361 aagtatcgcc aaaaattggg gcgatttaaa ataatcaagg agataattaa tggatctttc
     9421 aaccatatta ggaatggtgc ttgcagttac tagtatttcg gtaggagata tactagaggg
     9481 aggcaatcct ttgcatgttg tgcatctttc ttcctttctc atagttatgc caacagctgc
     9541 attttgcgca atgacttcta cgcataaaaa aattgtaaaa gcagcctaca aagaactcaa
     9601 agttgttttt aaaggttctg gagtaaattt acccgaaagg atagcccagt taatagaatt
     9661 tgctattatt gcaagacgag atggtctttt agcgttagaa tcaagaacca gtgagattga
     9721 aaatgaattt ttaaaaaatg ctatgatgat gcttgtagat ggtaaaagct ttgaagaaat
     9781 tcacgaaagc atggaaatac aaaccgaaca acttgaagag cattataaag aatgcgcaga
     9841 atattggata gtatttggag aaacttgccc taccatgggg cttgttggag cggtttttgg
     9901 tcttattcta gctcttaaat tgctagacaa tcctcaagca atggcagcgg gtatttcagg
     9961 tgctttcaca gctacagtta cgggaatttt tggcgcttat gcactttttg ctccttgggg
    10021 gaaaaaatta aaagctaatg gaatggatct tgtaaaagag caaattgtta ttactgaagc
    10081 tataaaagga attgcagaag gtgctaatcc tagagattta gaagctaaac tttttaactt
    10141 cttaagtcac gatgatccaa gaatttcaca atttgacaaa ggttaaaaat ggctaaaaaa
    10201 cataaatgcc cagaatgtcc agcaggtgaa aaatgggctg tgccttatgc agactttcta
    10261 agtttgcttt tggcactttt tattgctctt tgggcaattt ctaaaacaaa ccctgctaaa
    10321 gtagaggctt taaaaactga atttgttaaa atctttgatt acacctctac tcaaacagtc
    10381 aaagaagaag ctaaaaccca agaaaaatat aaaggcgcag caaaagaaga aagcgatgaa
    10441 ctcaaatcgt taaaacaaat gactatgaca cagcaagaaa ctatcaaacg tcttcaagca
    10501 gctctagatc aaagcgataa tcaggttgct cttaaccttc catctaaagt tgaatttgaa
    10561 agaggtagtg ctcaaatcgt ttcagctgat atacaagatt atttaaaacg tatggctgag
    10621 ctaacaacat atttgccacc tcaagcaaaa atagaaatta gaggctatac agacaatagc
    10681 gactctatta taagaagtta tgaactcgcc taccaaagag cggaaaatgt attaaaatat
    10741 tttatagaag gtggagcaaa tttgaaaaat attagcatta aaagctacgg gcttaataat
    10801 cccatcaatg gaaatccaca aactctagaa aataatagag tagaaatata ttttaaagtc
    10861 gatacagcag atacaagtac tcaaaaatcg gttcttgagc ttattaacaa aataggaact
    10921 aaagcacctt aaaagtttta gtttcctttt tttacttgac cagctaaacg actcttatta
    10981 tttgtattat aaacaaatcc tagcacctca gctacagctt taaacatttc cctaggaata
    11041 agatcattaa catcacaagc tttataaagc tctcttgcta aaggaggatt ttcataaact
    11101 acaacattat tttcataggc tacttgtttt atgcgaagag cgagaaaatc cactcctttg
    11161 gcaacaaccc taggggcttg ttctttacct gtatcataac gaatagctac ggcataatgc
    11221 gttgggtttg tgatcaccac atccgcacct gcaacatctt gaaccatacg acgacgcgca
    11281 gcttccattt gaagtctacg aattctacct ttaacctgag gatctccttc catttgttta
    11341 tactcatctt ttatttcttg tttgctcata cgcaaacctt taaaatactg aaaacgcacc
    11401 aaaaaaacat ctaaaacagc aataattaaa aaagcaacta taacaatagc tgctaaaaca
    11461 atagctctgt ctcttagcca agtaagctgt gcaaccatag tataaagctc aactcttgga
    11521 agctcttgca taaatttaag taaaactata aaagctatag taaaaacaat acccactttt
    11581 aaaataattt ttatactttc aacaattttt ttcaatgaaa aaaggttttt taaacctttt
    11641 agaggattga tttttcctaa atttggcata ataggtttag ttgtaaaaat aaaaccaaat
    11701 tgcataatat ttcccaaaac cccagcaatc ataatactta aaacaatagg tgcaagaata
    11761 attaaaacct caaaaatgct tttaatcata atggcttgaa taatacgcaa atcaaattca
    11821 acaccaataa aactttgata gtatctatat aaatttacaa ttctctcgcc cataaaactc
    11881 atcataaata aagttatagt tactccaatt atcaaagtta caatagctgc cgcatcttga
    11941 gactttggaa cattaccttc tttacgcgca tcttctatct ttttggacgt gggttcttct
    12001 gttttttctt gatcttcgcc tgccatattt tagcctaaat aaaaatttta atatgtgtgt
    12061 aaaattatag tagaaaattt atgaatttca attaaagaat aaaaatgaag aaaaagcctc
    12121 gtaaagaggc tttatactaa gaaattaaag tttagcttcg tttttgccaa gatattcagc
    12181 cacgccttta gggttagctt tcataccttc atcgccctta ttccatcctg caggacaaac
    12241 ttcaccatgc tcatttgtaa aaagcatagt atcaaccatt cttaacattt catctatatt
    12301 tctacctagt ggtaaatcat taaccacagc atggcgaact gttccatcag catcaagcaa
    12361 gaacgaacca cgaagggcaa ctgcttctgc ataaagtaca tcaaaatttc tagcaatctg
    12421 cttagttaaa tcagcaacaa gtgggaattt aacctgacca ataccacctt gatttactgg
    12481 agtatttttc caagcaaaat gtgaaaattc attatctcct gaaattccaa ttacttcaat
    12541 accgcggttt ttaaattctt gatatctttt gtcaaaagct ataatttctg aaggacaaac
    12601 aaaagtaaaa tcttttggat aaaagaatac taccgctcct tttggaccta tgtttttata
    12661 aagattaaaa tcttgaacaa tttcattgtt tcctaatacc gctggagcag taaaatctaa
    12721 agctttttta gtaactatca t
//
LOCUS       DARBBO010000044        12294 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.044, whole genome shotgun sequence.
ACCESSION   DARBBO010000044 DARBBO010000000
VERSION     DARBBO010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12294)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12294)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12294
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.044"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..571)
                     /locus_tag="SB854_001006"
     CDS             complement(<1..571)
                     /locus_tag="SB854_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957008.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQEGNENSLEQ
                     LSYIFNNTTYASEFGFRINEEGFFDKDLNKIANIPESYNINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLGQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITN"
     gene            727..918
                     /gene="rpmI"
                     /locus_tag="SB854_001007"
     CDS             727..918
                     /gene="rpmI"
                     /locus_tag="SB854_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEG0957009.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            1012..1365
                     /gene="rplT"
                     /locus_tag="SB854_001008"
     CDS             1012..1365
                     /gene="rplT"
                     /locus_tag="SB854_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEG0957010.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(1424..2023)
                     /locus_tag="SB854_001009"
     CDS             complement(1424..2023)
                     /locus_tag="SB854_001009"
                     /inference="COORDINATES: protein motif:HMM:NF021926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FIST C-terminal domain-containing protein"
                     /protein_id="HEG0957011.1"
                     /translation="MNAVEVLCNYFNCTFEELKNKMQEYTFALKIGEDYLISPMKINP
                     NKTLFSYCDIESAQELSLLKKTNFIEAIKKDYEKFSLNKPKPLGVIFNDCILRRLHNK
                     EHLNQIHFNDFPIVGFSSFGEIYGAGIAKSLVAIFFYEVENFNDFKPRYLKTFIQKYS
                     DFKYYYLNIKGQKLEMTNEINKIILNQLKCYEDVLAKLN"
     gene            complement(1936..2501)
                     /locus_tag="SB854_001010"
                     /pseudo
     CDS             complement(1936..2501)
                     /locus_tag="SB854_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851848.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
     gene            2983..3840
                     /gene="cheP"
                     /locus_tag="SB854_001011"
     CDS             2983..3840
                     /gene="cheP"
                     /locus_tag="SB854_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HEG0957012.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVMADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPNK
                     AKENLNKED"
     gene            3868..4347
                     /gene="cheQ"
                     /locus_tag="SB854_001012"
     CDS             3868..4347
                     /gene="cheQ"
                     /locus_tag="SB854_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HEG0957013.1"
                     /translation="MMKSLILPPNEFLDHYILNTEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(4316..5626)
                     /locus_tag="SB854_001013"
     CDS             complement(4316..5626)
                     /locus_tag="SB854_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0957014.1"
                     /translation="MNKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVLLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIGVIKSCVFFSVFFGIASLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALNNLSNFWRFSLGVYVFFLAIVALLCAFIFSYLNNTQRTYSQ"
     gene            complement(5610..5792)
                     /locus_tag="SB854_001014"
     CDS             complement(5610..5792)
                     /locus_tag="SB854_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HEG0957015.1"
                     /translation="MAYEDEEDLNYDDYENEDEDEEYTQNHHKNYNYDDDDYEYDDDN
                     NDDDFYEMEIKNEQNP"
     gene            5885..6358
                     /gene="moaC"
                     /locus_tag="SB854_001015"
     CDS             5885..6358
                     /gene="moaC"
                     /locus_tag="SB854_001015"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEG0957016.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITLRIATASGIIYMSQEAFDVIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKVETNIVEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDIVLESKEGGKSGKFVRS"
     gene            6336..6599
                     /locus_tag="SB854_001016"
     CDS             6336..6599
                     /locus_tag="SB854_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 domain-containing protein"
                     /protein_id="HEG0957017.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHVKASEIFEEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKKDRLDIFDKLKAKAKFVL"
     gene            6589..7749
                     /locus_tag="SB854_001017"
     CDS             6589..7749
                     /locus_tag="SB854_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957018.1"
                     /translation="MYFKKEGKMKNTLIIFENSLSNLGKDEASDLLEDLSFNLVYKQI
                     SHNPHETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYEYISE
                     AELLNKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILK
                     ETAESAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIA
                     NESMAYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIA
                     LLKKEIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKIND
                     FNKLTQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKFVKK"
     gene            complement(7768..8526)
                     /gene="xth"
                     /locus_tag="SB854_001018"
     CDS             complement(7768..8526)
                     /gene="xth"
                     /locus_tag="SB854_001018"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEG0957019.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEQIDFIGFQEIKAHEDKFP
                     KKIYEYPFKHMYFNSAKRAGYSGVMSLCNFNSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            8644..10182
                     /gene="eptC"
                     /locus_tag="SB854_001019"
     CDS             8644..10182
                     /gene="eptC"
                     /locus_tag="SB854_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HEG0957020.1"
                     /translation="MLRLTWLQFTFFNSLMIVLLNFNLFYFVYEKNTQNWFITFVFIV
                     AYFALVHVICSLLFIKFFTKFFSILFIISSFLSVYFISFYGVLIDSDMIQNVVQTDIK
                     EVKDLLNLKLILFVVLALLLVFYVVKVKIDYYGSFKSHLKIKIINIISGLIVVCAVLI
                     PLSKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYVRFVKAKPEFKTIANDAYRENNHTK
                     KLLVLVVGETARAANYSLGGYAKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSI
                     SKRENYSSSEFQENAMDVLYKTGVDTAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLL
                     APFKEKLNHLSDQNIIVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDNEALIN
                     TYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENDIYLHGMPYAIAPSY
                     QTRIPAIFWSNDEKLMNLAKEHKGLKLSQDNLFSTLLGYFDVKTSVYEPEYDLLNPKL
                     KANP"
     gene            10179..10535
                     /locus_tag="SB854_001020"
     CDS             10179..10535
                     /locus_tag="SB854_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEG0957021.1"
                     /translation="MKPKYHFLNNARYALEGIFALFKNEMAFRIELCIIIPAIVFSFF
                     LKVSFLEHLLLVSVLMLILIIEALNSAIEACVDLITNEWHEKAKIAKDCASTAVFFSV
                     LLALFVWSFILYSIYL"
     gene            10532..10777
                     /locus_tag="SB854_001021"
     CDS             10532..10777
                     /locus_tag="SB854_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HEG0957022.1"
                     /translation="MKFEKLIQEILGKKRFELLKFLCENADENGFIMIKISDLEEKLH
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLNIGDKNET"
     gene            10767..11774
                     /gene="pyrC"
                     /locus_tag="SB854_001022"
     CDS             10767..11774
                     /gene="pyrC"
                     /locus_tag="SB854_001022"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEG0957023.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPPLC
                     NLEDLKAYKMRILKACKDENFTPLMTLFFENYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPKDTKECCGCAAGVFSAPVILPVLAELFKQNSSEE
                     NLQKFLSDNTCKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     H"
     gene            complement(11799..12020)
                     /locus_tag="SB854_001023"
     CDS             complement(11799..12020)
                     /locus_tag="SB854_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957024.1"
                     /translation="MVKNLIIKFGRLILDAIAAISFVVALLYSLFMMFSIGFLAGLLS
                     LIVSFIALFLSFFVIYLVIDIRDALVNKA"
     gene            complement(12076..>12294)
                     /locus_tag="SB854_001024"
     CDS             complement(12076..>12294)
                     /locus_tag="SB854_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG0957025.1"
                     /translation="NYLLEKNIFFHKIVFDETRKVQRTKEEAIENALWHLSMNKITTS
                     KEAVSSFVENDIIETIESKIKLLIINNL"
BASE COUNT         4432 a         1617 c         1815 g         4430 t
ORIGIN      
        1 aattagttat tttattatct aacattaaag tatttaaatt tgtgatatta cttaatgcca
       61 aatcaatttc ttcttgattg ttgtaaattc ttgaaatttg gcctaaaaat tctccattat
      121 ctgttgaaaa acctgatgat agttttgaaa taagatcgcg acttaaataa gcattatcat
      181 cttgtaaaaa ttctgaattt atagatttta atgaactatg atagctattt aaaagataag
      241 gtagatcaat tttattgtag tttaaatttt cgtcttgttt tgcgagttct tttgctatgc
      301 ttctaacgct tttaatgttg atattataag attctggtat atttgcaatt ttatttaaat
      361 ctttatcaaa aaaaccttct tcattgattc taaatccaaa ttcactagca taagtggtat
      421 tgttaaaaat ataacttaat tgttctaagc tattttcatt tccttcttga tctaaggctt
      481 tgctatcttt aatcaaattt agagcagagc tattctgcaa aggattagat aaggttaaat
      541 tttgatatgg atttgccgaa tttatagtca ttttaaatct ttccaaaata ttgctgattt
      601 tttataagca aaaggtgtgc caagtttttt aaaaattaaa ttcagtcaaa aattagaaaa
      661 aatttgatag tatttagctt ttcttttaat ttgaaaaata aaaatttatc taaataagga
      721 aagcgtatgc caaagatgaa aagcgttaaa agcgcagtta aacgcttcaa agtaggtaaa
      781 aataaaatca aaagaggctc agcttttaga agtcatattt tgactaaaaa acctgcaaaa
      841 agaatgcgtg atcttcgcac agctaaatat gtgcatagca caaatgtaaa agctgttgaa
      901 aaaatgctag gaatttaagt ttttgactaa aagtcattca aactcccctc tgagataaaa
      961 tttcaagggc aagctccaaa tttggacgcc actttatgaa aggaaataaa aatggcaaga
     1021 gtaaaaacag gtgttgttag acgccgcaga cataaaaaag ttttaaaatt agcgcgtggt
     1081 ttttatagtg gacgccgcaa acattttaga aaggcaaaag aacaattaga aagaagtcta
     1141 gtctatgctt atcgtgatag acgccgtaaa aaaagagact tccgtcgtct ttggattgtg
     1201 cgtatcaatg ctgcttgcag actcaatgat ttaagttatt caagatttat caatggtctt
     1261 aaaaaagcag gcattgaact tgatagaaaa attctagcag atttagctat gaatgatgct
     1321 gctgcttttg caaaaattgc agaggccgca aaaaaagcac tttgattttt tagtgtaaga
     1381 atttcaagat ttttgatttc ttgaaattct taatttttta gtattaattt agtttagcta
     1441 gaacatcttc ataacatttg agttgattta agattatttt attaatctca tttgtcattt
     1501 ctagtttttg accttttata ttaagataat agtatttaaa atcactgtat ttttgtatga
     1561 aagtttttaa atatctaggt ttgaaatcat taaaattttc aacttcataa aaaaatattg
     1621 ccactaaact ttttgcaatt cccgctccat aaatttctcc aaaactagaa aaaccaacta
     1681 taggaaagtc attaaaatgg atttgattta aatgttcttt gttgtgaagc ctccttaaga
     1741 tacaatcgtt aaaaattact cctagtggtt ttggtttatt aagagaaaat ttttcataat
     1801 ctttttttat agcttcaata aaatttgttt ttttaagcaa gcttaattcc tgagcgcttt
     1861 ctatatcaca ataactaaat aatgttttat ttgggttgat tttcataggg gaaataagat
     1921 agtcttctcc aatttttaaa gcaaaagtat attcttgcat tttattttta agttcttcaa
     1981 aagtgcagtt aaaataatta cataaaactt caaccgcgtt gatggattga aaggtttttt
     2041 atcaataaat tcgcgtatag ttttatcata taaacttgca tcaagtatag taaaggtgat
     2101 attgctttga ggattaaaat tttgagactt cattaaatta aaacggtatt taggtttaaa
     2161 ttgaacatgt atgcttaaag cttgattttt aatatttctc cgttataaaa tataaatgct
     2221 ccgctaaagt ccatgtttcc gctagaccca ccccctacta aagcacaagg ataggggttg
     2281 tgtttgtaca aaagttctaa aagagaactt tcgctttgac ttaaaccatc ataaattaaa
     2341 taatgcaaag tatttatgca gtgtgcttca aaaggtatat ttataaataa aacttctttt
     2401 tctatcagtt tttttctttc tgtataatct tttatatcac taaaaagctt gattttattt
     2461 gtgcaaagat tttctatcat atcttcacta aaaagtatca agcttattcc ttggatattt
     2521 tgtttataag gactgttttc aatgtttgag ttagaatcaa ggttgcataa taaatcagta
     2581 gcactgctta agatgatatc acattgctca tttatagaat tttgaatctt atttcctatg
     2641 atcgctagat taagttgatt gacacaaagc ctataattaa ttttggcttg atgtttattt
     2701 tttttaattt ttcttcaagt tcattttatt gaagatatgg agcttctaaa acttttttac
     2761 ttcttctttt tttgttgagc ttttattttt aaaattaaaa aaacatcaat ttaactccat
     2821 taaaactatt ttttaattac tagttaacta aatcaagaca ccataaattc ggcatttatt
     2881 tgtaattttt attatacctt aagtcataaa aaatgcaata agtaaattaa aatttagata
     2941 taattgcaaa ttataataat attaattaag gataaattaa atatgattgg agatatgaat
     3001 gagcttttat taaaaagcgt tgaagtattg ccacctttac ctgatactgt aagtaaatta
     3061 agaaaatatg tgagcgaggc taattcaaat atagaaacta tgaaagttgc tgaaatcatt
     3121 tcaagcgatc cgttgatgac ggctaagctt ttgcaattag caaattctcc ttattatggt
     3181 tttacaagag aaattacaac cataaatcaa gtgattactt tattaggcgt tggtaatatc
     3241 atcaatatag ttatggctga ctccattaga gataatttta aaatagacgt ttcaccttat
     3301 ggtttaaata ctcaaaattt tttaaaaacg tgcaatgaag aggcaacttt tatcgcaaat
     3361 tggcttaatg atgaagataa aaaactttct catcttttag ttccttgtgc aatgctttta
     3421 aggcttggta ttgttatttt ttcaaatttt cttatacaaa atcataagga taaggatttt
     3481 ttagcttttt taaataaaaa tgaaaatctt gctttagcgg agaatgaatt tttaggcgta
     3541 gatcatattt ctttcttggg atttttgtta catcgttgga attttgatga tgttttgatt
     3601 gaaagtatat gttttgttcg cactcctcat gctgctcgcg aaaaagtgaa aaaatccgct
     3661 tatgctttag caataacaga tcatcttttt gctccgcatg atggctcttc tccatttaac
     3721 gcaaaagctg cagttgcttt acttaaagag gcaaaaactc aaggaattaa ttttgattta
     3781 aacaatcttt tatctaagct tcctaacaaa gctaaggaaa atttaaacaa agaagattaa
     3841 agagcctttt taaggctcta aattgtagtg atgaaaagtt taatcttacc tcctaatgaa
     3901 tttttagatc actatatttt aaatactgaa tttcatcgtt ttgctggaat ttcaaaaaat
     3961 gcttataaat tttggaaaaa tgtagaaata ggtagatatc aaggaacaag aattatattt
     4021 ttgcatagaa attgcatttt agaaaaacat cagcaagctt taaggcaatg tagtggttta
     4081 aatggttttg tattggcaag tgctttttgt tcttttactg gattagcccc ttctcattta
     4141 gtggaaaaaa ataattcttc tatttataaa cttttagagc ttaaggagat ttgcgggatt
     4201 aaatttgtta atctaaaaaa attttatgat tttttagggc taaattatca tcagcatatt
     4261 tatatagaaa aatgccattt ttttagccca gctccttttg aaaagcgtat taaaatcact
     4321 gagagtatgt gcgttgggta ttattaagat aagaaaaaat aaatgcacat agcaaagcta
     4381 caatagccaa aaagaaaaca taaactccca aagaaaaacg ccaaaaatta cttaaattat
     4441 ttaaggcaaa actatgcaag aaaaaagcaa gttgcggagt taaacctcca gctatagcat
     4501 aagcaatatt atatgaaaaa gaaagtcctg aaaatttaat ttttgcatca aatacttcac
     4561 tcattattaa agggcaaaaa ttcatcaccc cgctaaaaaa acatacaagt aaatataagc
     4621 aagctactag gttaaaatca gcattttgtc tatataaagt attaaaataa agcaagctcg
     4681 caattccaaa aaaaacacta aaaaatacac aagatttaat aacgcctatt ttatccgcta
     4741 aaattccact tataatacac cctaggcaaa taagcaaaat tccacctatt tgaagatagg
     4801 tttgtataga agtattaatt tgaagtattt ttgccatata actaggcata agcaaaatca
     4861 ttacaacaat acaacctgtc aaaacccaag taatcatcat agaaagaaca attcccattt
     4921 tagctttttt aaacacttct tttaaaggaa atttttctaa agccttgtct tttttcattt
     4981 gttcaaaaac aggagtttct cttaaaaatt ttctcaaata agcagaaata atcccaaaaa
     5041 ttccacctaa aaagaatgga attctccaag cccattcatg aagttcttct tgggtataaa
     5101 ttttattcat aattaaaaaa actaaactac ctaataaaat tccacctaca accgaagcgg
     5161 ttaaaattcc caaataagtt cttttttgac cttgtggtgc gtgttcgtat acaaaaaccc
     5221 aagctccagg aagttcccca cctatagcta taccttgaca aatgcgtata aaaactaaaa
     5281 gtacaatgca aagaaagcct atgctttcat aatttggaat aaaagctaga gtaaaagttg
     5341 gaataaccat taataaaata ctaatcataa acattctttt acgtccaaat ttatctccaa
     5401 aatgtgccag tatcacaccc cctaagggac gcgctaaata tccagctgca aatattccat
     5461 aagtattaaa catttgccaa aaactactta aatcttttgg aaaaaagttt gttgaaatat
     5521 aatttgcaaa aaatacaaaa ataataaaat cataaaattc taaagttcca cctaatgatg
     5581 aaagtcctaa aacttttata tctttttggt taagggtttt gttcattctt aatctccatc
     5641 tcataaaaat catcatcatt gttatcatca tcgtattcat aatcatcatc atcataatta
     5701 taatttttat ggtgattttg tgtatattct tcatcttcat cttcattttc ataatcatcg
     5761 taatttaaat cttcttcatc ttcataagcc attgttttct ccttaaataa aaatacaaag
     5821 cttattttat cttaaatttg tttggttttg ctataatttt tataattttt taaaaggtga
     5881 atttatgaaa ttaagtcatt tagatgaaaa aaatcatcct aaaatggtag atgtaagcga
     5941 taaaaatatt actttaagaa tagccacagc tagtggtata atatatatga gtcaagaagc
     6001 ttttgatgta attaaaaaca ataccgcaaa aaaaggtcct gttcttcaaa cagctattat
     6061 tgcggctata atgggggcta aaaaaacaag tgaaattatt cctatgtgcc atcctttgat
     6121 gctttctaaa gttgaaacta atattgtgga atttgttaaa gaatgtgcat ttaagcttat
     6181 tgtaacagtt aagtgtgaag gtaaaacagg tgttgaaatg gaagctttaa gtggagttag
     6241 tataggactt ttaactatat atgatatgat caaggctata gataaatcaa tgagaattac
     6301 ggatatagtg cttgaaagca aagaaggagg taaaagtggt aaatttgtgc gatcttaaaa
     6361 aagaacctca gatcaattat cctacttttt gggattataa ggtgattttt gaggtgcatg
     6421 ttaaggcaag tgaaattttt gaagaaattt taggccaaag agaatataaa tttgaacatt
     6481 cgaattcaag tgcgagtgga aaatatcaaa gttatttatt aaatgtttat gttgatagca
     6541 aaaaagatcg tttggatata tttgataaat taaaagctaa agcaaaattt gtactttaag
     6601 aaagaaggaa aaatgaaaaa tactttaatt atttttgaaa attctttatc aaatctcggt
     6661 aaagatgaag caagtgattt acttgaagac ttgagtttta atcttgtata taagcaaatt
     6721 tcacataatc ctcatgaaac aaaaaaagtt ttaaattctc ttttggttga atttttaact
     6781 attttgaaaa aacttgattt ttttgatgat gaaaatgtta caaaggttat caaagctttg
     6841 gttaaggcga gtattgtaga tgctcaaaat tcactttatg agtatattag cgaagctgaa
     6901 ttattaaaca aacagattga aaatcaaaag aatttgatta aaaatcaaat cagcgataat
     6961 ttttttgaat tcgagaatat tttacaagaa tgttcttttt gtgatgaatt tagtggtggt
     7021 ttaaatgatg ctattttatt tgatatagaa atgcttggaa ttttaaaaga aaccgctgaa
     7081 agtgcttttt taactacatt agaaaaggct gaagatatag aacttacaag tagtgaaata
     7141 gctaaaaatc tcgtatataa tgccatttgt gaagctcatt ttgaaaaaga aagaatttta
     7201 aaaatttcaa gtattatttt aaataccgct tttgaaatag ctaatgaatc tatggcttat
     7261 gcaaaagatc tttgtttagg cgtgattaaa ggcacaaggg atggtattgt tttggcaatg
     7321 gaaaaattta aagcttcatt aacttatgca aattttgaag aagatgttag tttaaaaagc
     7381 aaagaactaa taggtataga agatgatttt attgctcttt taaaaaaaga gattcaatta
     7441 caaaatgatc cttgtaagag tatagttgag aatttgctag aacatgaact tgataatctt
     7501 tttgctaaat ttagacgtct tgcaggtgaa agcagagagc aactaatatt agttttaaat
     7561 gatattaaga aaaatccaaa gattaatgat tttaacaaac ttactcaaag aaaattaaat
     7621 cgttttaaac aagaaatttt tgaattagaa aaaattgcta gtgaaaaata caaagattta
     7681 aattccaaaa aagctaaaaa gctcggtgta agactttggg aaaaagcaaa aaaattcgtt
     7741 aaaaaataat atcccatttt tgggatatta aatatctatt tctataccta caggtgcgtg
     7801 atcagagcca aaaatatcat ctcttatgaa agcgttttta agtttatctt ttaaaccctt
     7861 tgaaatgaaa aaataatcaa tcctccagcc tacatttctt tctcttgctt tcattctata
     7921 gctccaccac gagtattttt ctttgatttc accattaatt tctctaaaag tatctataaa
     7981 accaagcttt agcaaatcat caatccaagc tctttctata ggtaaaaaac ctgaagtgtt
     8041 ggcattggct tttggatgag taagatcgat ttctttatga gcagtattga catcaccgca
     8101 aatgataatt tcaaatccat cctttaaaag cttatccaaa tacactaaaa aatctgcata
     8161 aaatttcatc ttaaaattta aacgctcttc atctttttga ccatttggaa aatagatatt
     8221 aaaaagtgca atatttttaa agcggtgttc taaaacccta ccttcttcat catcaaaaaa
     8281 ttcgcatttt tttacttcgc tattaaaatt acaaagactc attaccccag aataccccgc
     8341 tcttttagca gaattaaaat acatgtgttt aaaaggatat tcataaattt ttttaggaaa
     8401 tttatcttca tgtgctttga tttcttgaaa acctataaaa tcaatttgtt cttgtgctat
     8461 ccaatcaagt gcatttttat cacaaatagc tcttaagcca ttgacattcc atgaaagtag
     8521 tttcattatt ttccttaaaa ttttcattaa aagtgtaaat cataacataa aaagatttaa
     8581 aactacaatc catttaaaaa aattcaataa aattaaaagc ttaaatttgg aggtgggatt
     8641 tatatgctta gattaacttg gcttcagttt acttttttta attctttgat gattgtattg
     8701 ttgaatttta atttatttta ttttgtgtat gaaaaaaata cacaaaactg gtttataact
     8761 tttgttttta ttgtggccta ttttgccctt gttcacgtga tttgctcttt gctttttata
     8821 aagtttttta ctaaattttt ttctatattg tttataatat catctttttt aagtgtttac
     8881 tttattagtt tttatggggt gcttatagat tctgatatga tacaaaatgt tgttcaaaca
     8941 gatatcaaag aagtaaaaga tttgttaaat ttaaaattaa tcttatttgt tgttttggct
     9001 ttattgttgg ttttttatgt tgttaaagta aaaattgatt attatggtag ttttaaatcc
     9061 catctaaaaa ttaaaattat caatataata tcaggtttga ttgttgtttg tgcggtttta
     9121 atccctttaa gtaaaacttt cttgcctttt tttagaaact ataatgaaat aagaatgtat
     9181 aatacccctt tttatcaaat ttatgccgta tatcgctatt atgttcgttt tgtaaaagct
     9241 aagccagaat ttaaaactat agctaatgat gcttatagag aaaacaatca cactaaaaaa
     9301 cttttggttt tggtagtggg tgaaaccgct agagcggcaa attactcttt gggtggatat
     9361 gctaaaaatg ataccaattt ttataccaaa aaagataatg tagtgttttt tgataatttt
     9421 tcatcatgtg gaacagcaac agcggtaagt ttaccttgta tgttttctat ttctaagcgt
     9481 gaaaattatt caagttcaga atttcaagaa aatgcgatgg atgtgcttta taaaacaggt
     9541 gtagatactg catggtttga taataattct ggtggttgta aaggggtttg tgatagatta
     9601 gcttataagc aaaagctttc tagtgatttg gatgaaaatt tgctcgctcc ttttaaagaa
     9661 aaattaaatc atttaagtga tcaaaatata atagttcttc atttgcaagg ttctcatggg
     9721 ccaacttatt ataaacgcta tccaagtgaa tttaaaaaat tcactccaac ttgtgatact
     9781 aatgagcttt caaaatgtga taacgaggct ttaatcaaca cttatgacaa tactttactt
     9841 tatacagatt atcttttaag tgagattata aaactattaa aagagcaaaa aagctatgaa
     9901 agttctttgt tttatctttc agatcatggt gaaagtttgg gtgaaaatga tatttatctt
     9961 catggtatgc cttatgctat agcgccaagt tatcaaaccc gtattcctgc tattttttgg
    10021 agcaatgatg aaaaattaat gaatttagct aaagagcata aaggtttaaa actttctcaa
    10081 gataatcttt ttagtactct tttaggatat tttgatgtaa aaacaagtgt ttatgagcca
    10141 gaatatgatt tattaaatcc taaacttaag gcaaatccat gaagcctaaa tatcattttt
    10201 taaataatgc aagatatgct ttagaaggga tttttgcttt atttaaaaat gaaatggcgt
    10261 ttagaattga actttgtatt attatccctg cgatagtttt tagttttttc ttaaaagtta
    10321 gttttttgga gcatttatta ttggtaagtg ttttaatgct tattttaatt atagaggctt
    10381 taaattcggc tattgaagct tgtgttgatt tgattacaaa tgaatggcat gaaaaggcaa
    10441 aaattgctaa agattgtgcg agtacggcag tgttttttag tgtgctttta gctctttttg
    10501 tttggagttt tattttatat agcatttact tatgaaattt gaaaaattaa tacaagaaat
    10561 tttgggaaaa aagcgttttg aattgttaaa atttttatgt gaaaatgccg atgaaaatgg
    10621 ttttattatg attaaaatca gtgatcttga agaaaaatta catcaaagta aacctaccat
    10681 catcgctact tttaagtttt tagaagaaaa aaaacttttt aagcgtctta aaaatggatt
    10741 ttatcagcta aatataggag ataaaaatga aacttaaaaa tcctttagat atgcatttgc
    10801 atttaagaga taatcaaatg ttagaactta ttgcaccttt gagtgcaaga gatttttgtg
    10861 cagctgtgat tatgccaaat ttaatccctc cgctttgcaa tttagaagat ctaaaagctt
    10921 ataaaatgcg tatccttaag gcttgtaaag atgaaaattt cactccttta atgacacttt
    10981 tttttgaaaa ttatgatgag aaatttcttt acagtgctaa agatgaaatt tttggcatta
    11041 agctttatcc agcaggaatt acaacaaatt caaatggtgg agtttcaagt tttgatatag
    11101 agtatttaaa acctacttta gaggctatga gtgatttaaa tattcctttg ctagtgcatg
    11161 gtgaaaccaa tgattttgta atggacaggg aaagtaattt tgctaaaatt tatgaaaaat
    11221 tagccaaaca ttttccacga cttaagattg ttatggagca tattaccact aaaactttat
    11281 gtgaactttt aaaagattat gaaaatttat acgcgacaat cactttacat catttaatca
    11341 tcactttaga tgatgttatc ggaggtaaaa tgaatcctca tcttttttgt aagcctatag
    11401 ccaagcgtta cgaagataaa gaagcccttt gcgaacttgc ttttagtggt tatgaaaaag
    11461 ttatgtttgg aagtgatagt gcacctcatc caaaagatac taaagagtgt tgcggttgtg
    11521 ccgcaggtgt atttagcgcc ccagtgattt tacctgtttt agctgaatta tttaagcaaa
    11581 atagctcaga agaaaatttg caaaaatttt taagcgataa tacttgtaaa atttatgatt
    11641 taaaatttaa agaagataaa attttaactt tagaagaaaa agaatggcaa gtgccaaatg
    11701 tttatgaaga taaatacaat caagtcgtgc cttatatggc tggagaaatt ttaaaatttc
    11761 aattaaaaca ttgatttccc accttaaagg tggaaaattt aagctttatt tacaagagca
    11821 tctctgatat ctataacaag atagattaca aaaaaactta aaaataaagc aataaaactg
    11881 actatcagcg ataataaacc agctaaaaat ccaatgctaa acatcataaa aagagaataa
    11941 agcaaagcta caacaaaact tatcgctgca attgcatcaa gaatcaagcg tccaaatttg
    12001 atgattaaat ttttaaccat taaaaactcc tttgaaataa tgagtgaaat tgtaataaat
    12061 atcagcttaa tatttttata agttatttat aattaaaagt tttattttag attctatagt
    12121 ttcaataata tcattttcaa caaaagaact tacagcttct ttagaagttg tgattttgtt
    12181 catgcttaaa tgccatagag cattttctat agcctcttct tttgttcttt ggactttgcg
    12241 tgtttcatca aaaacaatct tatgaaaaaa tatatttttt tctagtaaat aatt
//
LOCUS       DARBBO010000045        12101 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.045, whole genome shotgun sequence.
ACCESSION   DARBBO010000045 DARBBO010000000
VERSION     DARBBO010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12101)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12101)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12101
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.045"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            55..264
                     /locus_tag="SB854_001025"
     CDS             55..264
                     /locus_tag="SB854_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957026.1"
                     /translation="MKKIFLTFMVLVNCVFASDELNIDSLFKKQIGLRSITSFSLLST
                     GNANSYSLYPNITIGGDPTIWNDTK"
     gene            733..909
                     /locus_tag="SB854_001026"
     CDS             733..909
                     /locus_tag="SB854_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005021772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-structuring protein H-NS"
                     /protein_id="HEG0957027.1"
                     /translation="MKQKINGYQNSEVRSIPTLSLGSTYSINSDTAVSVNASFGGSSA
                     SPDSIFGISLWKKF"
     gene            894..1493
                     /locus_tag="SB854_001027"
     CDS             894..1493
                     /locus_tag="SB854_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEG0957028.1"
                     /translation="MEKILKILLFLPILALSTKAEWVVKSYQEIKNERVIRQTYEQSC
                     GASSLATLLNILDDQKKFDELELLKIMSGQELYTDMVSFADLNDAVKKLGFQSNSYQI
                     NRENLDKLVNIPMLVKIEDDPRFPHFVIIINHKGNYLQVLDPSHGEYISSKSQFFSIW
                     DRYNKGGYALIVAPKKELKPFKLNTPKSLHFDFSPFSLF"
     gene            complement(1542..2384)
                     /gene="fliY"
                     /locus_tag="SB854_001028"
     CDS             complement(1542..2384)
                     /gene="fliY"
                     /locus_tag="SB854_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HEG0957029.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNTSDTLKAP
                     LVYAIFNIANGGKIGILAGAILMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(2381..3460)
                     /gene="fliM"
                     /locus_tag="SB854_001029"
     CDS             complement(2381..3460)
                     /gene="fliM"
                     /locus_tag="SB854_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEG0957030.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            complement(3460..4152)
                     /locus_tag="SB854_001030"
     CDS             complement(3460..4152)
                     /locus_tag="SB854_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HEG0957031.1"
                     /translation="MLKEPPKAYAQMLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            complement(4133..4489)
                     /locus_tag="SB854_001031"
     CDS             complement(4133..4489)
                     /locus_tag="SB854_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957032.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            complement(4508..5374)
                     /gene="flhG"
                     /locus_tag="SB854_001032"
     CDS             complement(4508..5374)
                     /gene="flhG"
                     /locus_tag="SB854_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HEG0957033.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            complement(5367..6821)
                     /gene="flhF"
                     /locus_tag="SB854_001033"
     CDS             complement(5367..6821)
                     /gene="flhF"
                     /locus_tag="SB854_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEG0957034.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGDKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLAKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            complement(6831..7304)
                     /gene="folK"
                     /locus_tag="SB854_001034"
     CDS             complement(6831..7304)
                     /gene="folK"
                     /locus_tag="SB854_001034"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEG0957035.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            complement(7307..7786)
                     /gene="aroQ"
                     /locus_tag="SB854_001035"
     CDS             complement(7307..7786)
                     /gene="aroQ"
                     /locus_tag="SB854_001035"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HEG0957036.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            7877..9106
                     /locus_tag="SB854_001036"
     CDS             7877..9106
                     /locus_tag="SB854_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG0957037.1"
                     /translation="MFIVAARYLFLCDEDFTILENQAFVFEDKILELGELDNLKKKYP
                     KAKIIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSILNAQAKE
                     ELILQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTNENQVEDK
                     KQEFLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAHFALDLAKKQNLLASTHFLESK
                     AENIWLRESKGGFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDK
                     NLHSITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIH
                     KNFDLLELASKLLQMVTLYPARALNLNLGELKKGKIADFNVFELGECDKKQAPLQFIL
                     NAKEVDKLFIKGKECKF"
     gene            9094..9990
                     /gene="sppA"
                     /locus_tag="SB854_001037"
     CDS             9094..9990
                     /gene="sppA"
                     /locus_tag="SB854_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEG0957038.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILIPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIAYKTNSSFINAR"
     gene            10069..11100
                     /locus_tag="SB854_001038"
     CDS             10069..11100
                     /locus_tag="SB854_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HEG0957039.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(11342..11692)
                     /locus_tag="SB854_001039"
     CDS             complement(11342..11692)
                     /locus_tag="SB854_001039"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957040.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFGIHQKIQLKGVKFKCKKC
                     KEAIQFYKKYSENF"
     gene            complement(11668..11964)
                     /locus_tag="SB854_001040"
     CDS             complement(11668..11964)
                     /locus_tag="SB854_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEG0957041.1"
                     /translation="MLLDKLIPTWNEKYSIHDTMIDIQHQKLCELASKVESAVYKFVK
                     REELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNEHKIMHKISFVICLILYKT"
BASE COUNT         3898 a         1846 c         1857 g         4500 t
ORIGIN      
        1 ggattaaatt ttaaaattaa cttgagctga ttatttaaaa tgtaaggatt gacaatgaaa
       61 aaaattttct taacatttat ggttttagtt aattgtgttt ttgctagtga tgagctaaat
      121 atagacagtt tatttaaaaa gcaaataggc ttaagaagca ttacaagctt ttctttactt
      181 agcacaggaa atgcaaactc gtattctctt tatcctaata taacaatagg cggagatcct
      241 acaatttgga atgatacaaa gtaggtgttt ttaactcaaa ctttcattta tactctaaca
      301 cctaagtttg acatacttat ttcagggggc ggaagttatg caagacaaga atatacaaat
      361 tttttcacaa atgcatattc ccataaagat cgcataggat ttgataatct atggctaggt
      421 tttatttata caggcgatag tattgcagat ttaattccac aaattacctt tcaaactgca
      481 gttgttcaaa gagaaaaagc aatcaatcaa accaaaaact tttatctaaa atcacaaagc
      541 ttacaagcta gtttaagggg atatagcgat cctgtagttt atagtattta tacagggttt
      601 ggttataatc aatcaagaaa atttaaaacc cttaaaatag agtatggaaa tagtatttat
      661 gtgggtgggg atttatctat tattctaagt tctaaaatta ctttagattt aggagcagag
      721 caaagatttc aaatgaaaca aaaaatcaat ggctatcaaa attctgaagt gcgttctatt
      781 ccaactttaa gtttaggttc tacttatagc attaattcag ataccgcagt ttctgttaat
      841 gctagttttg gaggaagctc tgcttctcct gatagcatat ttgggataag cttatggaaa
      901 aaattctaaa aattttatta tttttaccca ttcttgcttt gagtacaaaa gccgaatggg
      961 tagttaagtc ttatcaagaa attaaaaacg aaagagtaat aagacaaact tatgagcaat
     1021 cttgtggtgc ttcatcttta gcaactttac ttaatatact tgatgatcaa aaaaagtttg
     1081 atgaacttga acttttaaag attatgagcg gacaagaact ttatacggat atggtaagct
     1141 ttgcagattt aaacgatgca gttaaaaaac tgggctttca aagcaattca tatcaaatca
     1201 atagagaaaa cttggataaa cttgtaaata ttccaatgct tgtaaaaatt gaagatgatc
     1261 cacgctttcc acattttgtt ataattatca atcataaagg taattattta caagtgcttg
     1321 atccaagcca tggagaatat ataagttcta aaagtcaatt ttttagtatt tgggatagat
     1381 ataataaagg tggttatgct ttaattgttg ctcctaaaaa agagctaaaa ccttttaagt
     1441 taaacactcc aaaatcttta cattttgatt tcagcccttt tagtttgttt tagttttaat
     1501 tcgtttatat ttattattct taatttgtag gctaaaactt tttatcttag ttgttctaat
     1561 ctttcttttt tagaaccaat ttctgtaatt tgaacgccga agttaccatc gacaattact
     1621 acctcgccat aagcaattct tttatcccca attaaaattt caagcggatc gtttgcaagt
     1681 tgattaagct ccacaactga acctatatcc atagttaaaa catcttttaa aagcattttt
     1741 ttattgccta tacgcacacg aacaggcaaa cgcacatcca tgataagatt gatattttta
     1801 agctcttcgc taagcattat cgctttttct tcagtattgt gattagaatc agtgcttgta
     1861 tttcctgttt cagcaggttt cccgcttagg atgttatgga gtgtttgatc catggctaaa
     1921 gaaacttgtt cttctaaatc gcctattttt acatcatata aaaataattt tttaaaatct
     1981 ttaaaatcta cgctttcagg cacaaattca caagattcta tgctaaaatc catttttgga
     2041 atgtcttttt gggctcctaa ggttgtagaa aatgctgaaa tgatattttg gatggcttct
     2101 ttagctgcat ccatttcatc aggacctagt ttatcgtttt tggtgatctc ttcttcaccc
     2161 atcatccatt caccaatagc actcattaaa atagcaccag ctaaaattcc tatttttcca
     2221 ccatttgcta tattaaatat agcatacact aaaggtgctt ttaaagtatc gcttgtattg
     2281 acatcaaatt ctttatattc gctaaattca gcactttttc ctgttaaacc ttcaatggtg
     2341 ctgatgcatt catttgtaaa catttttaaa aaatcattga tcatatttct tcatcctcct
     2401 cttcaggctc atcataaaca ctagctttag ctttacgctc ttcttcgtat ttttccaaaa
     2461 tttctttgat ttcatcttta tctgtgcgta taagttctaa aattttaata gattttctaa
     2521 aacgatgcaa tccaatttgt gctaagaaaa catctttttt atcgatgctt actatagctt
     2581 tatcatctgc ttctctatca agtcttaaga tatcgccttg tttaagttct aaaaattcat
     2641 gaacattaat taaggttttt cctaaaattg cctcatatac cacttcagca cgaccgatta
     2701 aagttttaag ttctttgttg cgtgattttt tggctgaggt ttcacccatc ataatatcac
     2761 ggtttgctaa acggcttaat atactttcta aatgtactac aggatagcag atatttacca
     2821 ttccgcttga atttcctatg atgatttcca ttactaccat gataacaatc tcattttgag
     2881 atacgatttg tacaacattt ggacttgatt ctttagcttc tatactagga taaatttcag
     2941 ttacggtagc ccagctttct ttaagtcttt gcataatgat acgcaaaata gaatcaagca
     3001 aattaagctc aatatccgta agctcacgcg aagcttcata gctatcacct tgtccgccca
     3061 aaagtctatc tatcatagga aaagctatgc ttggattgat ttctaaaaca cagtttccat
     3121 ctaaaggttt gatagaaaaa acgttaaaac ttgttgggct tggcaaagac attaaaaact
     3181 ccccataagt catctgatcg actgaatgaa gtttagtttc aacaatactt ctcatcatcg
     3241 atgaaatttg agaggctaaa tttcttgcta atttatcatg tatgccttta atcgtcctaa
     3301 gttgttcttt tgaaactctg ttgggacgct taaaatcata tacaacgata tttctttcat
     3361 ctttttcatc ttttgaattt gaggctatgg gtgtgtcggt gttatcatcg acaacttcaa
     3421 gtagagcatc aatttcttct tgggagagta tctcagccat tacactagcc tttctctaag
     3481 ttttttaaga agttttttgt gaatttgtga aattctgctt tcactgattt gtaaaatttc
     3541 actgatttct tttaggctta attcttcata ataataaagc tgaataatta actgatcgcg
     3601 ctctttaaga tcatctagca cttcgtgaat tttttctaaa agttcttctt tttcaatttt
     3661 ttctaaagta ttgtcttcat tataaagttc gatttgctca tcaatgggca gggtatagct
     3721 aatagcatga gctgttctta cttctttgat tttttctaca tctaaatcaa gttttttggc
     3781 tagatactca tcatcaggtt cgcattcatg ttctaaaaaa tattcatcca tgattgcatc
     3841 aatatcttta ataattttac gattatttcg actcattaca tcaagacttc taagataatc
     3901 aagcatagag ccgttaactc tttttcttgc aaaaccccag aagttatcat tttgttcttt
     3961 atcgtaacgg cgtgaaagct ttatcatttc ttcaacgcct atgctaataa gatcattaac
     4021 atctatactt gaaggcaagc gttcttttag tctaaaagcc atagcacgca gagctggcat
     4081 gtaagaaagc acaagctcat cttgctcttt ctttagcatt tgtgcataag ctttaggcgg
     4141 ctcttttagc atttcttcgt ctttctttga attcattttt ctttagctct tctctttctt
     4201 cattgagctt ttctaaaatt atatccattt tcttttcacg aataactaaa tcgttgataa
     4261 tattattgct agttttttca taatcgtgtt tattaaagat tctgccacta attttcttta
     4321 catctataaa attcataata gcaatatgaa caaaaacata aaacataaaa gtaataaaac
     4381 aagtaaaaat cagtatatca aaggcttcat ctatactaat aatgctaaat gcaagtccta
     4441 taaaaaatcc acaaacagtg aaaaatgcta cgtaattttc tggcctcata atctcttctc
     4501 tttattgcta aaatctttca ataatttttc taaaaaaact tgaaaaacta cgatttgaaa
     4561 cattatcaag cactttccgt tccaatctat ataaaagctt ggaagctagg gctttaatct
     4621 catcacttga ggctgtgttt tcatcgctaa ataaagttct ttttttaata ctaccactta
     4681 catctttaga agcgcttaaa tgacctaaga attctaaatt taaaggattt ttaatgtttg
     4741 catctgcaac ttttttaata ttttcaaaaa cttttaaagc ttcattttca ttttttacaa
     4801 cattaaagag cattagtaaa ttttcttttg tcttagaagt tgtttttatg gttgcatacg
     4861 catcagtgat tgctgcagga tcaggaacag ttactactat aacttcatca gccatttcta
     4921 aaaaatttaa aatatttcca ccaatacccg cgcctgtgtc gataataaga aaatcaagtt
     4981 catctaaaat acttgcttga tttaaaaatc tctcgtaaat atttttatca ttatatttta
     5041 aaatctcatc tccactttcg cctgggatga gccataaatt tggcttaact tctattaaaa
     5101 tgtcttccaa ggagcattct ccgcgtaaaa catgcaagag atttttttgt atgcgtacat
     5161 ttaaaatgac atccaaattt gccaagccaa tatcagcatc aaaaagccca actttatagc
     5221 cattatttgc taaaacattg gctagattcg cgctaatcgt actttttcca acgccacctt
     5281 ttccacttgt aatagctata aaatgagtgt tttgggattt tttggttcca ttttgactca
     5341 tgagattgcg aagtttattt gcttggttat tcattatttt ttcctttgtt aaacccttct
     5401 aaaatacaat gaactagaaa atcactattg gctacttcta aatcatctgg cacttcttgt
     5461 cctatagaga aaaagcttag aggaatattt gtttcataaa caagagagaa gatatttcca
     5521 aaaacctttg tttcatcaaa tttagtaata atcaaagtat caatatttaa gaatgaaaaa
     5581 tttttataaa tttccattaa atcttcatgt ttggtgtttg cagaaaccac taaatttaca
     5641 tcaatttctg catttgagtg cattaaaaat tctttagttt tagcaagttt gctttgatcg
     5701 tattgtgaat ttcctatagt atcaactaaa attacttcgc aattatttaa gctttttatc
     5761 gcttcatcta aatcctttgg ttctatgcta tcaataatag gaagtttcat catttttgca
     5821 tactgaaaaa gttgctcaac tgcaccgatt ctataagtat caagcgtaat aatacctgtt
     5881 ttataacgct tatctccata agcatagcga aaagctaact tagctaaggt tgttgttttt
     5941 ccgactcctg ttgggcctac tagcatcatg attttttgtt tttttatatc gctttcaaca
     6001 cgacaaggca agatatttct taaaagtgag tgaaaatatc tttgaaccgc atctttgttg
     6061 gttttcatag cagctggcat attttctata gttgctttca taatcgcttc tagatgattt
     6121 tcaagcattc cactttcttt ggcttgttta taaatacttg caaattcagg aggtatcata
     6181 agattttttc tagcttcagc tttatcgtcc cacatcatat ctgcaagaag atctatttta
     6241 tcattaagct tgttgatttg tttttcaaat tgcttttcaa aattttctat ttttttatta
     6301 taatttggat taggggtgta attttctaaa ggtgtgtttg tgactttaga aatttcattg
     6361 ctaacttcac ttagtttttc tttgaaatca tcaaagccta gagtcttatt ttgatgaggg
     6421 ttgattttgt tttgtggaaa atcttgatag gtttttttag ctaagtcatt gttttttaca
     6481 gtgtttaaat ttgtatttaa gcgagtgttt gagaaatcca agactacatc ttcatcttct
     6541 tgagggattt gagatctaat tttttcttct gcaagagagg tagaggatgg ttttggcgag
     6601 cttttttttg caggtaaaga ttttccttgt ttttttaagt gttcttcata gtcgctttct
     6661 tctatggcta ccataacctc ataaagcgca ctgcgattta aggttttagg acgaatttgt
     6721 ttatttgtta taattaaagc tttatctccg taatcttctt ttactttggg tataatttgt
     6781 tctgtatctt caacggtaaa agtatgtata agttgtccca tttatattcc ttatatcatg
     6841 cctaaaggca aaattacact cactctttct ttagcccctt tatgaggcac ctcacaccac
     6901 ttatcacgct tgactttttg tgaaaagtat aaaagatcta aatcaagcgt tctaggagcg
     6961 tttttgaaag ttctcttgcg tttaaatttt acttcatagt aaagtaaaac tttcaaaagt
     7021 gctcgtgcat gcaaattagt ttgtatcaac ataacagcat tggtaaaatc tttttgctct
     7081 ttaaaaccaa aggcttcatt tatcaacata ggagatgtgg ataaaatttt aaatctttta
     7141 tcatccatca ttactcgaaa aagcatatca aatctttttt tttcgggttc tatattgctt
     7201 cctaagccta taagagctaa atatttaaaa gatcgtatat tttgactaaa aaaaggaaaa
     7261 aaacgacttt tttcaaagtg ttttactcct tgaattttta gcattattat ttattcgttt
     7321 gttgtgcttg ttgcattgcg cgcaaatttt ttatttgttc gcaaatttga attataccca
     7381 ttaaagccaa gtgatagcca aaaggaccaa aaccaacaat agttccagaa catacaggcg
     7441 ctataagact tttttgacga aattcttctc tgcgataaac attgctaata tgtacttcaa
     7501 ttgtaggcaa agctactgct gcaatagcat cgcgaatagc tactgaagta tgagtatagc
     7561 ctgctgcatt gataataatt ccatcaactg ttccaaggca ttcttgaatt ttatctacga
     7621 tttcaccttc aaaattactt tggaaaaagt caagttctac attgttttgc gatgctgcaa
     7681 gtttcatttg ctcatgaatt tcttccattt tcatagcacc ataaattccc acttctctta
     7741 cgccaagcat attaacattt gggccttgga taatcattat tttcatggat ttaaccttaa
     7801 aaatttattt ttaacctttt attataacat tttaaaaata aatttttgct acaatgtaat
     7861 ttttgaaagg aaaatcgtgt ttatagttgc tgcaagatat ctttttttat gcgatgaaga
     7921 ttttacaata ctagaaaatc aagcctttgt ttttgaagat aaaattttag aattgggtga
     7981 attggataat ttaaaaaaaa aatatcctaa ggctaaaatc atcaaaacac ctaaaaattc
     8041 ggttatttta cctgctttta taaatcctca cacacattta gaatttagtg caaattcaac
     8101 aactttacat tttggagaat ttttaatttg gcttaaaagt gttataaatt ctcgttccat
     8161 attaaatgca caggccaaag aagaattaat acttcaaagc attaaaaaaa tgcaaaaaag
     8221 tggtataggc actataggtg aaatttcaag ttttgggagt gatttagatc cttgcttaaa
     8281 ggctagtcac aagggtatgc gtatagtatt ttttaatgaa attttgggta caaatgaaaa
     8341 tcaagttgaa gataaaaaac aagaattttt aaaaagattt gaaaattctt tgaaatttaa
     8401 aaatgatttt tttatcccgg caatttcgat tcattctcct tattcaactc atcctagttt
     8461 ggctcatttt gctcttgatt tagctaaaaa gcaaaattta ctagctagta cgcatttttt
     8521 agaaagtaag gctgaaaata tctggcttag agagtctaaa gggggtttta aaaaatggct
     8581 tgaaaatttc acacttcatc ctaagcctct ttatacacca aaggattttg ttaaactttt
     8641 taaaggagta aggactcttt ttacgcattg tgtttatcta aaagaatatg aatggttaga
     8701 taaaaattta cattctatta cacattgtgc attttcaaat cgccttttaa gtcaaaaaag
     8761 cttagattta aaaacggctt taaaaagtgg attaaatatc catttaggaa ccgatggact
     8821 tagctcaaat atttcattgt ctttacttga tgaaatgcgc gcgaatttgc ttatacataa
     8881 gaattttgat ttattagagt tagcctctaa gcttttgcaa atggtaacac tttatcctgc
     8941 aagggcttta aatttaaatt taggagagct taaaaaaggt aaaattgctg attttaacgt
     9001 atttgagcta ggagaatgtg ataaaaagca agctcctttg cagtttattt taaatgctaa
     9061 ggaagtggat aaattattta taaaaggaaa agaatgcaaa ttttaaaatc attttttaag
     9121 gctttaggat gcggtataaa atttatcaat acttatttta aaacctttgt tttattgttg
     9181 attgttatat ggattttaat acctagtgca aattcaagct ctaatcttgc aaatttagaa
     9241 cgcattgatt taaagggtga aatttttgac agctctgcgg ttttggaaaa aattatcaat
     9301 gctaaaaatg atagcaatat caaaggagtg ctttttgtta tagactctcc tggtggagct
     9361 tttgctccta gcatggaact agctctagct ataaaggatt taaaaattaa aaagcctgtg
     9421 cttgtttatg caagcggaac tatggcaagt ggaagttatt tagcaggagt tggagcaaat
     9481 aaaattttag ccaatccggc aagttttata ggctctatcg gtgtgattat gcaaggagct
     9541 gatttaagcg gattggctaa taaactcggt attaaagaac aaactattca agcgggtgaa
     9601 tttaaaagtg ctggaacttt tgcaagagct tggaatgaga atgaaagaaa ttttttacag
     9661 ggtttaattg atcaaagtta tgatcttttt acaggttttg ttgccaagga aagagcatta
     9721 gatcttaaca aaaaagatca atgggcaaat gcaagagtgt ttttagctgc caaggctaag
     9781 gagcttggtc ttatagatga gcttagtaat tatgaaaatg ctaaaaagga gcttgaaaaa
     9841 cttgctaatg tttcaaatcc tgtttggaaa gaagaagata agattgataa atttcttaac
     9901 cgcctagaag gacaaacatc aagcttgata agtaaaagct taatcgaaat cgcttataaa
     9961 actaatagca gttttataaa cgctagataa aatatataaa tatttttatt taatttttgt
    10021 aatattttta tgcaataatt atttatatct tagataagga gtaaaataat gaaaaaaaat
    10081 attgtttttt tcgaagttaa aggtgggagt gataaaggtg aagatggcta tagaaaagat
    10141 accatgccta tggtaaatgc cttaaaagct aagggttgga atgctgaggt gatttttttt
    10201 gaagtgggta aaaaagatga aatttacaaa tatgtgaaag aaaattttga tggttatgtt
    10261 tctcgcatca atcctggcaa tcttaaagaa gaaaatgagt attttgatat gttaagaaaa
    10321 ctttgtgccg ataagcttgt aggtatgcct catcctgatg ctatgatagg ttatggtgct
    10381 aaagatgcac ttacaaaatt agcagatact gatcttgttc caagcgatac ttatgcttac
    10441 tatgatatta agacttttaa agaaaatttt ccaaaaagtt tggctaaagg tgaaagggtt
    10501 ttaaaacaaa atcgtggctc tacaggagag ggaatttggc gtgtgagtgt agagggtaat
    10561 gttagtggag atagtttgcc tttaaacaca aaaatcaaat gtacagaagc taaggataat
    10621 catgtagaac atagagagct tggggaattt atggattttt gcgagcaata tatcataggt
    10681 gataatggta tgcttgtgga tatgactttt ttaccgcgca ttaaagaagg tgaaatcaga
    10741 cttttaatgc tttataacac ccctgtaaat gtagtgcata aaaaaccagc cgaagatgct
    10801 gatgcttttt ctgctacgct ttttagtggg gcaaaatatc gctatgataa gccagaagat
    10861 tggaaaactt tggtggatat gtttttaggc gagcttccta aggtaaggga aaaattaggc
    10921 aattacgact taccattgat ttggacggct gattttattt tagatactga tgaaaagggc
    10981 aatgataaat atgttttagg cgagattaat tgttcttgtg taggttttac ttctcattta
    11041 gaacttgctg atgaagtagc ttcaaatatt attaatattg taagtaaaac taaggcttag
    11101 tctttaagct taatgtccat tttattattg taaaatggac attctttttc tattgttttt
    11161 aagtttgagc tatattctat cgagaaaaaa ttttcacaaa atgagcattt tgtatctttg
    11221 gttagtatag gataggaata gtcaaattta tccaaaataa aatattttat ttttttatcc
    11281 ttaaatttcc ttctttgtct aacttatact ttatttatta ttttaacgca taaatagtta
    11341 attagaaatt ttctgaatat tttttataaa actgtatggc ttctttgcat tttttacatt
    11401 taaattttac gcccttaagt tgaatttttt gatgaattcc aaatggtaca tcatgcattt
    11461 gttctacgca ttcgcatgta taaagataaa ctgtattttc atcatctttt tcttctttga
    11521 cttcttcaaa gcttacttcc ccatcatctt cagaagttaa agaagatctt ctgtattgtt
    11581 caactttcac atctttatag agtatatgtt ctaaaagcca ttttttagaa actgtgtaaa
    11641 gcttctcttt taaatcatta gtggttttta tgttttgtat aagataagac atatcacgaa
    11701 tgatatttta tgcatgattt tgtgttcatt taaataagga taatgaattt cttgcatata
    11761 atcttcttca ttactaaaat gttctttcat atagttaaaa agttctgtta aaatttcttt
    11821 gagttcttct cgttttacaa atttataaac agcactttca accttgcttg caagttcaca
    11881 aagtttttgg tgttgaatgt caatcattgt gtcatgaata ctgtattttt cattccaagt
    11941 tggaattagt ttatctaaaa gcaccttctt taatttttat atttaaaatt aatttaatat
    12001 atttgagtga aatattacat aatattttat taaaatatta ttaattagaa attatttatt
    12061 ttatttatat ttgtataata taaaaaatat atataattaa t
//
LOCUS       DARBBO010000046        12036 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.046, whole genome shotgun sequence.
ACCESSION   DARBBO010000046 DARBBO010000000
VERSION     DARBBO010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12036
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.046"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..253)
                     /locus_tag="SB854_001041"
     CDS             complement(<1..253)
                     /locus_tag="SB854_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957042.1"
                     /translation="MKHCLALCFVFFLCACSVKNQNFSSQSLMVLIASPMIKINDTAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINVVCYDKQVF"
     gene            complement(262..753)
                     /locus_tag="SB854_001042"
     CDS             complement(262..753)
                     /locus_tag="SB854_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HEG0957043.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKESIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKVIKDSKLKVNSSIRGEEIRVAAKQIDDLQAVMKLVKELDLELNISFK
                     NLK"
     gene            complement(743..1678)
                     /locus_tag="SB854_001043"
     CDS             complement(743..1678)
                     /locus_tag="SB854_001043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HEG0957044.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     AKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLAFEE
                     LKLLKDNAILINVGRGGIVNENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(1681..2850)
                     /locus_tag="SB854_001044"
     CDS             complement(1681..2850)
                     /locus_tag="SB854_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HEG0957045.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVINNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLAHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(2860..3465)
                     /locus_tag="SB854_001045"
     CDS             complement(2860..3465)
                     /locus_tag="SB854_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HEG0957046.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(3585..3797)
                     /locus_tag="SB854_001046"
     CDS             complement(3585..3797)
                     /locus_tag="SB854_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEG0957047.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            3957..5333
                     /gene="ccoG"
                     /locus_tag="SB854_001047"
     CDS             3957..5333
                     /gene="ccoG"
                     /locus_tag="SB854_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HEG0957048.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFSLPFIRINENHFFLLSFDHS
                     KLNLFFISFSTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIYRDIIQ
                     TKFLKIRKNINNKQKEYERQYFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQN
                     PGEHLLLLGILFCASLLFTLDITYLQEKFCVYVCPYARIQSVMFDHDTMQVIYDEKRG
                     GLIYDGHTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQS
                     KFNRPSLINWTSAKALETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNIN
                     RSSELYNISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFK
                     LKAGEQVKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTL
                     IKDKNELK"
     gene            5320..5952
                     /gene="cmeR"
                     /locus_tag="SB854_001048"
     CDS             5320..5952
                     /gene="cmeR"
                     /locus_tag="SB854_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HEG0957049.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIENGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMGFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            6047..7150
                     /gene="cmeA"
                     /locus_tag="SB854_001049"
     CDS             6047..7150
                     /gene="cmeA"
                     /locus_tag="SB854_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HEG0957050.1"
                     /translation="MKLFQKNTILALGVVLLLTACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIENKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQNGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAIFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIAVKQNQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            7150..10272
                     /gene="cmeB"
                     /locus_tag="SB854_001050"
     CDS             7150..10272
                     /gene="cmeB"
                     /locus_tag="SB854_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HEG0957051.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPSSLVPEED
                     QGLMIGIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLKDWKDRNVSADEIAMELNKKFAFDRNASSIFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAVANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            10265..11743
                     /gene="cmeC"
                     /locus_tag="SB854_001051"
     CDS             10265..11743
                     /gene="cmeC"
                     /locus_tag="SB854_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HEG0957052.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNI
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
     gene            complement(11766..12017)
                     /locus_tag="SB854_001052"
     CDS             complement(11766..12017)
                     /locus_tag="SB854_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957053.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINNTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKAYEITDADLDKDF"
BASE COUNT         4155 a         1963 c         1774 g         4144 t
ORIGIN      
        1 taaacacttg tttatcataa cacactacat tgatgcaaat tttatctttg attttgagtt
       61 caaaaaaagc ttgccctagt ttataaactt ctaaatttaa agcattattt tcttttttta
      121 aaaaagctgt atcattgatt tttatcatag gagaagcaat caaaaccatc aagctttgac
      181 ttgaaaaatt ttgatttttc acactacaag cacaaagaaa aaaaacaaaa catagagcta
      241 aacaatgttt caaatttgac cttatttgag atttttaaaa ctgatattta actctaaatc
      301 aagctctttt acaagcttca tcacagcttg taaatcatcg atttgttttg ctgcaacacg
      361 aatttcttca ccacgaatcg aagaattaac tttaagcttg ctatctttaa taactttatt
      421 gattttttta gcattttcac tatcaatagc atcgtttgct ttcaaattta aacgaaacat
      481 tgctccactt tcacgagaaa gctctttaat agcattagga ttaattcctc ttttgataag
      541 tttagaaatc actatatctt ttaaaacatc aagttttcct tcactagaag aactgagttt
      601 aaaaatactc tctttttcgc ttaaatcaat ctcacactta attcctttta agtcataacg
      661 actatcaagt tcttttttag cttgttcaaa agcatttttt aactcttgtt tatctaaagc
      721 tgctgaaata tcaaaactat gttcacttgc cattttctat ccattctttt aaattattat
      781 aaactatatc cattaaagca tttaaagcct ccttgctcgc ccacgcaaca tgaggagtga
      841 taataagatt ttctttattt ttaatgctta aaagtggatg atttttcatc ataggttcaa
      901 tttctaaaac atcaagccct acacgaatat ttttttcatc tatgatttta gctaaatcat
      961 tttcattgac aatcccacct cttcctacat taatcaaaat cgcattatct tttaaaagct
     1021 ttaattcttc aaaggcgagt aaatttttgg ttttttcatt taaaggtgcg tggatactta
     1081 taatatcgca agtttttaat aaatctttta attccaaatg tacaaaatct gcgtttttat
     1141 tagctccact cgtagaataa taataaattt cggctccaaa agcctttgaa atttttgcca
     1201 cttctttacc tatggttcct aaacctataa taccatgttt tttaccactt aaggtgttta
     1261 aaattctact ataatctgta aaaataggac tttcacacca tttaccctct ttgctccatt
     1321 tgtcataata aagcacttga tttaaaaaag caaacataaa tgcaaaagta tgttgcacca
     1381 cactcatagt agaataccca gcagcatttt ttacaataat acctttttct ttagcatact
     1441 caatatcgat attattaacc cctgtagcag tttccaaaat gagttttaaa tttttacaag
     1501 catcaatcac atctttatca attacaacct tgtttgtcat ggcgacatta gcatctttta
     1561 aacgctctat ggtttgctct ttatttgttg tggtataaat ttgcaaagaa ccaaattttt
     1621 caaaaacact taaatcataa tcccctaaag ttgccgcatc taaacaaaca attttcattt
     1681 ctaatccttt ataatatgtc ctacaaattt agaataatta tcaagcacaa gtcctccttt
     1741 tctaaatcct aagccacacc cttcataagc aaagaaaaca cctgcttgat agtattcgtt
     1801 ttcacatgaa ttaaactcta catattcttg ataaatagcc ttattattcc cataaggacc
     1861 tacattctca tgcaaagttt ttccatcttt aattatactg atatttgcac cttctctacc
     1921 aaaaacaggt tttttaacat agtttttacc ttccaaagga gtatcttttg tttctaaaag
     1981 taatggatga tttggataaa gttcccatag aatttttaaa attcccttag attgaaataa
     2041 aagcgtataa gcaggattta aaataattgc tctttgatta cgcatgattt gagttaaaag
     2101 catagcaagt tcaccctctt ctatggctat atcttcccaa ggaataagct taaaccaata
     2161 ctcataattt tcaccctctt taaaaattcc ttcttcacta aattctacct catctacaaa
     2221 ggaaaaatta gtttgaaaac ctgcttcatt ggctatatgt gcaagcaatt ttgtagtgat
     2281 ttcctcttct ttacttcctg caacacttga aaaaagaatt ttccatcctt gataatgctc
     2341 ttcaaaccct tcaacacttt catcaagggt aataagtctt ttaaaattat ccatcaaact
     2401 ttcataaatg ctgttaaatt gtgcgctttc atccattcca ttttgtttta aaagtgccca
     2461 ttgtaaaatc gcactttcaa aaagagcagt aggggtatca gcattaaatt ctataagttt
     2521 tataggcttg ccatcaagtc cacccgctaa atcaaaacgc ccatataaat gccaatgaac
     2581 ctcattttcc caactcatct taatcgcatc aataagatta aaaggaattc caagctcatc
     2641 aaaacgatca ttattaatca cttcttgcgc tgcagcaata aacatatcat aaagctcatt
     2701 taccgcttca taataagcat tagcttcact ttccttaaca caaactaact tattgctaat
     2761 ataatcactt ccatcttcat ctgtatgcca agaaaaacct atattttcta aataatcttt
     2821 ttgaagtttg tctacttgta ataattgcat tatttatcct taagagccaa aagaagaact
     2881 agaacttgtg gctttagagc ctccaccaaa aaaacctgat tttttagcac ttgaagcaga
     2941 gcttgttgtg cctgctttat taaaactatt aacactcctt tgataagcac tttgatttga
     3001 aaaagcaccg cgttgttggt tggcaaaatt ttgattattg aaaagttttg aacctatcca
     3061 acttcctaaa atagcacctg cagcacttgc gagtaaagtt tcccctaaac tcaatccccc
     3121 actactgatt tgtccattgt ctttagttaa atttgaagtt ccattatcaa ttttagctgc
     3181 ttcttcttta atcaaagcat ccatttcttc tttggataaa attctttctg taccattaag
     3241 atcttttaaa actacccttg tttcatcact tggatattga tctttgattt tatactgccc
     3301 tggagctgtt tcttcgataa ttacaaaagc tccttgagca ttagccgctt gatttaaagt
     3361 atctgcattg tcattattac ttccacaacc tgctaaagca cctccagcaa cagctgctaa
     3421 accacctatc ataccaattt gaatgatttt tttgattttt ttcataagtt tatcctaaaa
     3481 acagaaaatt taaattagaa attttaacaa aaaataataa atacttttta atttaatacc
     3541 aaatgaagtt tgtagatata aaaaagccct ttcgggcttt tgggttagag tcttgactcg
     3601 tagcgtctaa gcatataaag tcttttaagc atttttttgc gtgctgaaat tttttgtttt
     3661 ttgcgaattt cagtcatagg ctcaaaaaat cttcttgctc ttacttcagt cacaactaga
     3721 tttctatcta cttgtttttt gaatttacga tacgcttcat caaaagactc gttaggatgc
     3781 accttgattc ctggcacagt cctcaccacc tttctgtgta aatttttgtt gtgaaatata
     3841 attataaaac acttcttatt aattctaact tagaaagcat ttaaaaattg ttttagtttt
     3901 tatcggttat aatccttaat tacaaagtgc taaaaaatta taattaaggt ctaaaaatgc
     3961 aaggacacat tacaaactat acaaaaaaac gatattttgt atatttaatt gcaagtatta
     4021 tcatattttc cctacctttc ataagaatta atgagaatca tttttttctt ttaagttttg
     4081 atcattctaa attaaaccta ttttttattt ctttttcaac acaagaattt tatctcatgc
     4141 cttttgttct tatatttctt tttttattta ttttttttat tacaacttta ggtggaagaa
     4201 tttggtgtgc ttggagttgt ccacaaacga tttttagagt tatatataga gatatcatac
     4261 aaactaaatt tcttaaaatt cgcaaaaata tcaataacaa acaaaaagaa tatgagaggc
     4321 aatattttaa aaaatttctt ggagtgataa ttttttattt tatatcttta gttgctgtta
     4381 gtaatttact ttggtacttt attcctcctg aagatttttt caattatatt caaaatcctg
     4441 gcgagcatct acttttactt ggaattttat tttgtgctag cttacttttt actttggata
     4501 ttacctattt acaagaaaaa ttttgtgttt atgtctgtcc ttatgcaaga atacaatctg
     4561 taatgttcga tcatgataca atgcaagtga tctacgatga aaaacgcggg ggcttgatct
     4621 atgatggaca caccaaactt cataaaaaac cgcctgaggg agaatgcata ggttgcgaag
     4681 cctgtgttag tatctgtcca actcatattg acatacgcaa aggaatgcaa cttgaatgta
     4741 ttaattgtct tgaatgtgcc gatgcttgct ctaaggttca aagcaaattt aatcgtccaa
     4801 gtttgatcaa ttggacaagt gcaaaagctc ttgaaacgcg ttctaaggtt cattatttaa
     4861 gatttagaac gatagcatat tttatagttc ttttaattgc tttactggct ttaatcatca
     4921 tgggaagcaa aaaagaaagc atgcttttaa atatcaatcg tagtagtgaa ttatataata
     4981 tttcaaatgt taaaggtgaa ttagtcattt caaatgctta tacctttttg tttcaaaata
     5041 cagattctaa acctcatgaa tattatttta cagcaaattt agaaggaata aatgatggaa
     5101 ttgaaatcat aagaccaaac aaacctttta aattaaaagc aggagaacaa gtcaaaaaaa
     5161 tagttgttat cagggctaca aaaaatttag caaataatga taaaaaagac gtaatctttc
     5221 ctttacatat aaaagcttac gcaaaggata atgaaaaaat ttcggttttt agaaaaagta
     5281 tatttgtata ccctaaaagc actcttataa aggataaaaa tgaactcaaa tagaacacca
     5341 tcacaaaaag ttttagccag acaagaaaaa atcaaagcag tggccttaga gcttttttta
     5401 acaaaaggat accaagaaac aagtttgagt gatattatta aattatctgg aggatcttat
     5461 tctaatattt atgatggttt taaaagtaaa gaagggctat tctttgaaat tttagatgac
     5521 atatgtaaaa aacactttca tcttatttat tccaaaacac aagaaattga aaatggcact
     5581 ttaaaagaaa ttttaacttc ttttggttta gcttttatag aaattttcaa tcaaccagaa
     5641 gctgtagctt ttggtaaaat tatctattct caagtttatg acaaagatag acaccttgcc
     5701 aattggatag aaaataatca acaaaatttt tcctataaca tacttatggg ttttttcaag
     5761 caacaaaata attcttatat gaaaaaaaat gcagaaaaac ttgctgttct tttttgcact
     5821 atgttaaaag aaccttatca tcatcttaat gttttaatta acgctccttt gaaaaataaa
     5881 aaagaacaaa aagaacatgt tgaatttgtt gtaaatgttt ttctaaatgg aatcaatagc
     5941 tccaaagctt aaaaaataat tttattaacc aaaattaaga tataattagc caaaaatttt
     6001 tgtaataaaa attacaattt ttaatttaat ttttcaaggc aaaaccatga aattatttca
     6061 aaaaaatact attttagctt taggtgttgt gcttttactc actgcttgca gcaaagaaga
     6121 agcaccaaaa atacaaatgc cgcctcaacc tgtaacaacc atgagtgcta aatctgaaga
     6181 tttaccactt agttttactt accctgctaa acttgtcagt gattatgatg tcattataaa
     6241 gcctcaagtt agtggcgtaa tagaaaataa actttttaaa gctggagata aagtaaaaaa
     6301 aggacaaaca ttatttatta tagaacaaga caaatttaaa gctagtgttg attcggctta
     6361 cggacaagct ttgatggcta aggcaacttt cgaaaatgca agcaaggatt ttaatcgttc
     6421 taaagctctt tttagtaaaa gtgcaatctc tcaaaaggaa tacgactctt ctcttgctac
     6481 atttaacaat tcaaaagcta gtctagcaag tgctagagca cagcttgcaa atgcaagaat
     6541 tgatctagat cataccgaaa taaaagctcc ttttgatggt actataggag atgctttagt
     6601 taatatagga gattatgtaa gtgcttcaac aactgaacta gttagagtta caaatttaaa
     6661 tcctatttac gcagatttct ttatttcaga tacagataaa ctaaatttag tccgcaatac
     6721 tcaaaatgga aaatgggatt tagacagcat tcatgcaaat ttaaatctta atggagaaac
     6781 cgttcaaggc aaactttatt ttattgattc tgttatagat gctaatagtg gaacagtaaa
     6841 agccaaagct atatttgaca acaacaactc aacactttta ccaggtgctt ttgcaacaat
     6901 tacttcagaa ggttttatac aaaaaaatgg ctttaaagtg cctcaaatag ctgttaaaca
     6961 aaatcaaaat gatgtttatg ttcttcttgt taaaaatgga aaagtagaaa aatcttctgt
     7021 acatataagc taccaaaaca atgaatatgc cattattgac aaaggattac aaaatggcga
     7081 taaaatcatt ttagataact ttaaaaaaat tcaagttggt agcgaagtta aagaaattgg
     7141 agcacaataa tgttttctaa attttttatc gaaagacctg tttttgcttc agttgttgca
     7201 attatcattt ctttagctgg agctataggt cttacaaatt tacctataga acaatatcct
     7261 tctttaaccc ctcctacagt taaagtaagt gcaacttaca caggagctga tgcacaaacc
     7321 attgcttcaa cagttgcaag tcctatcgaa gatgcaatca atggcgcaga taatatgatt
     7381 tacatggatt caacttcaag ttcttcagga actatgagtt tgactgttta ttttgatatc
     7441 ggtacagatc ctgatcaagc caccatagat gttaataata gaatttcagc cgcaactgca
     7501 aaaatgccag atgcagttaa aaaacttgga gtaacagtta gaaaaacttc ctcaacaaca
     7561 cttgctgcaa tttctatgta ttcaagtgat ggctcaatga gtgcagtaga tgtatataac
     7621 tatatcactt taaatgtttt agatgagtta aaaagggttc caggagttgg agatgcaaac
     7681 gctataggaa atcgtaatta ttctttaaga atttggctca agcctgattt attaaataaa
     7741 tttggaatca cagctactga tgtaatttct gcggttaatg accaaaatgc ccaatacgca
     7801 actggtaaaa ttggcgaaga acctgtaacc caaaaatccc cttatgttta ttcaatcact
     7861 atgcaaggaa gactacaaaa tcctagtgaa tttgaaaaca ttattttaag aacaaataat
     7921 gatggatcat ttttaagact taaagatgta gctgatgtgg aaataggatc acaacaatac
     7981 agctcacaag gacgattaaa tggcaatgat gcagttccaa ttatgatcaa tcttcaatca
     8041 ggggcaaacg cattgcatac agcagaactt gttcaagcta aaatgcaaga actttcaaaa
     8101 aattttccaa aaggtttaac atataaaatt ccttacgata caacaaaatt tgtaatagaa
     8161 tcaatcaaag aagttgttaa aacttttgtt gaagctctaa ttttagttat cattgttatg
     8221 tatatgttct taaagaattt ccgtgcaaca cttattccta tgatagctgt acctgtttca
     8281 ttgttaggaa cttttgctgg actttatgtt ttaggtttta gtattaactt gcttacgctt
     8341 tttgctttaa ttttagccat agggatcgtt gtagatgatg cgattatagt tgtagaaaat
     8401 attgatagga ttttacatga aaatgagcaa ataagcgtaa aagatgctgc tatccaagcg
     8461 atgcaagaag ttagctctcc ggttatttca attgttcttg tgctttgtgc tgtttttgta
     8521 ccagtttctt ttatatcagg ttttgttgga gaaattcaaa gacaatttgc tcttacctta
     8581 gctatatctg taaccatatc aggttttgtt gctcttacct taacaccttc tttatgtgca
     8641 ctctttttgc gacgtaatga aggagagcca tttaaatttg taaagaaatt taatgatttt
     8701 tttgattgga gtacctctgt atttagcgca ggagtagcat atattctaaa aagaaccatt
     8761 cgttttgttt taattttttg tattatgctt ggggcaattt tttatctcta taaagctgta
     8821 ccaagctctt tagttcctga agaagatcaa ggtttgatga ttggcattat caaccttcct
     8881 tcggcttcag cactccatag aacaatctca gaagttgatc acataagcca agaagtttta
     8941 aaaactaatg gagttaaaga tgcaatggct atgataggat ttgatctttt tacaagttca
     9001 ctcaaagaaa atgccgctgc aatgtttata ggcttgaaag attggaaaga tagaaatgtg
     9061 agtgctgatg aaatcgccat ggagcttaat aaaaaatttg cttttgatcg caatgcttca
     9121 agtatattta taggcctacc tcctatacct ggattaagta tcacaggcgg ttttgaaatg
     9181 tatgttcaaa acaaaagcgg aaaaagctat gatgaaatac aaaaagatgt aaataaactt
     9241 gttgctgtgg ccaaccaaag aaaagagcta tcaagagtaa gaacaaccct tgatacaact
     9301 ttccctcaat acaagcttat aattgataga gataaattaa aacactacaa tcttaacatg
     9361 caagatgttt ttaacacgat gaatgcaact ataggcactt attatgttaa tgatttttct
     9421 atgctaggta aaaacttcca agtaaatatc cgcgcaaaag gtgattttag aaatacacaa
     9481 gatgcattaa aaaatatttt tgtaagatca aatgatggaa aaatgatacc acttgattct
     9541 ttcttaactt tacaaagaag ttcagggcct gatgatgtaa aacgattcaa ccttttccca
     9601 gcggcacaag ttcaaggtca acccgcacca ggttatactt caggtcaagc tatagaagcg
     9661 attgctcaag tagcaaaaga aactttaggg gatgattatt ccatagcttg gagtggatca
     9721 gcttatcaag aagtttctag taaaggaaca gcaagctatg cttttgcttt aggtatgata
     9781 tttgtctttt taattctagc tgcccaatat gaaagatggc ttataccttt agcagttgta
     9841 acagctgtac cttttgcggt atttggatca tttttattgg tatatttaag gggatttagc
     9901 aatgacatat attttcaaac aggacttttg ctcttgattg gactttcagc taaaaatgct
     9961 atcttaatcg tagaatttgc aatggaagag cgctttaaaa aaggcaaagg agtttttgaa
    10021 gcagctgttg cagcagcaaa acttcgtttt cgtcctatca taatgacttc tttggcattt
    10081 acttttgggg tcttgccaat gattttcgca acaggagcag gaagtgcttc aagacactct
    10141 ttaggaacag ggcttattgg tggaatgatc gcagcatcaa ctttagcgat attctttgtg
    10201 cctttatttt tctatctttt agaaaatttt aatgaatggc tagataaaaa aagaggtaag
    10261 gttcatgaat aaaataattt caattagtgc tatagcaagt tttactcttt tgatttcagc
    10321 ttgctcttta agtccaaatt taaatattcc cgaagcaaac tatagcattg ataataagct
    10381 tggagcctta tcttgggaaa aagaaaacaa tagctctatc acaaaaaatt ggtggaaaga
    10441 ctttgatgat gaaaatttaa ataaagtggt tgatttagca cttaaaaata ataatgattt
    10501 aaaacttgct ttcatacaca tggaacaagc tgctgctcaa ttaggtatag attttagcag
    10561 tttgttgcca aaatttgatg gtagcgcaag cggaagtcgt gcaaaaacag ctataaatgc
    10621 tccaagcaat cgaactgggg aagtaagtta cggtaatgat tttaaaatgg gacttaattt
    10681 aagctatgaa atcgatcttt ggggaaaata tcgcgataca tatcgcgcct caaaatcagg
    10741 ctttaaagca agtgagtatg attatgaagc tgcaagactt tctgttattt caaatacagt
    10801 tcaaacttat tttaatcttg taaatgctta tgaaaatgaa aatgctctta aagaagctta
    10861 tgaatctgca aaagaaattt ataggattaa tgatgaaaaa tttcaagttg gcgctgtagg
    10921 tgaatatgaa cttgctcaag caagagccaa cttagaaagt atggctttgc aatataatga
    10981 agcaaagtta aataaagaaa attaccttaa agctttaaaa attttaactt caaatgattt
    11041 aaatgacata ctttacaaaa atcaaagcta tcaagttttt aatcttaaag aatttgacat
    11101 tccaactgga atttcaagta ccatcttgct tcaacgtcca gatattggct cttctttaga
    11161 aaaattaact cagcaaaatt atcttgttgg agtagctcgc acggctttct tacctagcct
    11221 ttctttaaca ggattattgg gatttgaaag cggggattta gataccttgg ttaaaggagg
    11281 ttctaagact tggaatatag gtggaaactt tactctgcct atttttcatt ggggtgaaat
    11341 ttaccaaaat gtaaatttag ccaagcttaa taaagatgaa gcttttgtaa attatcaaaa
    11401 tactttgatt actgcttttg gagaaattcg ctatgcttta gtagctagaa aaactatacg
    11461 cttacaatac gataatgcac aagcaagcga acaatcttac aaaagaatct atgaaattgc
    11521 taaagaacgc tatgatatag gagaaatgtc tttgcaagat tatttagagg cacgtcaaaa
    11581 ttggcttaat gctgcggttg cttttaataa tattaaatat tcttatgcca attccatagt
    11641 agatgtaatc aaagcatttg gtggaggatt tgagcaaagt gaagatacga gtaaaaatat
    11701 aaaagaagaa tcaaaaaatt tagatatgtc ttttagagaa tagtttgttc tattctctaa
    11761 ataaattaaa aatctttgtc taaatctgca tctgtaattt cataagcctt gtaaatagca
    11821 ggcaataatt ttcttatagc ataatcaaaa tgataaaatt gcttatatac ctcttctgga
    11881 tttaaatttt tagcattctt aaaatcaaat acttcagtat tattgatttt ggcaatattt
    11941 tcatcaaaat aagagtaaaa ctctgctctt tgtttaaaca aagcatttaa attttgaaca
    12001 attttggctt tatccatttt tatatccttt ttaaat
//
LOCUS       DARBBO010000047        11858 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.047, whole genome shotgun sequence.
ACCESSION   DARBBO010000047 DARBBO010000000
VERSION     DARBBO010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11858
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.047"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..150)
                     /locus_tag="SB854_001053"
     CDS             complement(<1..150)
                     /locus_tag="SB854_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957054.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKREKLENAIEA
                     YIDNID"
     gene            complement(134..1180)
                     /locus_tag="SB854_001054"
     CDS             complement(134..1180)
                     /locus_tag="SB854_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEG0957055.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKNVKFYNSNYGKEINENFNS
                     IIGDIEKDENFGKAIILITDLNLNLNQCEEFEKICKEKNTKIFLLDHHQSGEECAQKY
                     SWYLLDSKRCATKIVYDFFSKICTPVLELSKFVDVVNAVDIWLSEDENFELGKVFLGL
                     IANAKEINRVMFKESQIDYMFFLLDKAWKFIGKENANILLDNATHFIKKDYFARKNDD
                     TLSNLISYFVVEKLSELKENFSIEYEGHKGILTSNIGNTSVIGNDFLVKNPDYDFFID
                     VSSRKTLSFRANGKIDVSLMAKNLVGGGGHKNASGGLFATFKDGANYNYIKAQIIDLI
                     KSKELKKENNESKQ"
     gene            complement(1189..3363)
                     /gene="flhA"
                     /locus_tag="SB854_001055"
     CDS             complement(1189..3363)
                     /gene="flhA"
                     /locus_tag="SB854_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEG0957056.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAAASQSGAGGTTATPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            complement(3350..3760)
                     /locus_tag="SB854_001056"
     CDS             complement(3350..3760)
                     /locus_tag="SB854_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HEG0957057.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            3935..4207
                     /gene="rpsO"
                     /locus_tag="SB854_001057"
     CDS             3935..4207
                     /gene="rpsO"
                     /locus_tag="SB854_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEG0957058.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            complement(4293..7133)
                     /locus_tag="SB854_001058"
     CDS             complement(4293..7133)
                     /locus_tag="SB854_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsK"
                     /protein_id="HEG0957059.1"
                     /translation="MLAPGMGEWVYKANLFLFGEFAYYYPFFLFILNYVYYKRNYKLA
                     NFTRRELFGIGFAFFSSLLLFAVFYPNSGYILELAYAIFSTILGHTGSGIFALLLLLF
                     SLVLLFPKFAKEILKIELDFTYLLKVEQAFKSLLMRVFGGENEKEDVGKSEPIVPKLN
                     ILQDSIYGNLQINKKGETNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVHEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKL
                     EDIKQIDTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELELRENLIKKEKLEQEYKA
                     YQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKTETEESDKINENKNL
                     DKADNIFEFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKIDNEKTNDQ
                     EIKLQKAVLAKEIAINQALLREIEQGEIEKPKDFTLPPLDFLANPKEHKQEINESEID
                     KKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAK
                     SIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFV
                     TDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIP
                     HLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELGGEELPFIV
                     VIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSR
                     ISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDF
                     LKDQQSVEYDESFLKDQQSVGVTTNESFDGEADELYEEAKRVILEDGKTSISYLQRRL
                     KIGYNRSANIIEQLTQNGILSEPDAKGQREIL"
     gene            complement(7243..9495)
                     /gene="flgL"
                     /locus_tag="SB854_001059"
     CDS             complement(7243..9495)
                     /gene="flgL"
                     /locus_tag="SB854_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HEG0957060.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLNKDPDKTKYLTGDSKW
                     QQLIGQSYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTRPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDKTE
                     LNNIIQAAQDEGITMEDVTNRVMTAALGNPNNGDITNLNNPVTIQINGQNFEIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            9676..9762
                     /locus_tag="SB854_001060"
     tRNA            9676..9762
                     /locus_tag="SB854_001060"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9710..9712,aa:Leu,seq:caa)
     gene            9773..9847
                     /locus_tag="SB854_001061"
     tRNA            9773..9847
                     /locus_tag="SB854_001061"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9805..9807,aa:Gly,seq:gcc)
     gene            complement(9878..11809)
                     /locus_tag="SB854_001062"
     CDS             complement(9878..11809)
                     /locus_tag="SB854_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG0957061.1"
                     /translation="MALIDLIEASKKFGDKIVLNEVNFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRIIRQNGKSIAMLSQTVDFNANLSVKEAIKQELVEIYNTLEEYE
                     ILHKKLEEDPSNKDYLQKIDTLMTLIDSKDAWSIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINNKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFAKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGNGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNHPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
BASE COUNT         3761 a         2068 c         1587 g         4442 t
ORIGIN      
        1 atctatatta tcaatataag cttctattgc attttctaat ttttctcttt taactccagc
       61 gtataaaagc atagcttcta aaactatgct aagctcatat tgtaaatctt ctaattcatt
      121 ttttaaggtt ttattattgt tttgattcat tgttttcctt tttaagttct ttgcttttaa
      181 ttaaatcaat aatttgagcc ttaatataat tataatttgc tccatcttta aatgtcgcaa
      241 aaagtccacc actagcattt ttatgtccgc caccacctac taaattttta gccattaaac
      301 ttacatctat ttttccattt gcacgaaaac ttaaggtttt tctagaacta acatcaataa
      361 aaaagtcata atcaggattt tttactaaaa aatcatttcc aataacagaa gtattgccta
      421 tatttgaagt taagatgcct ttatggcctt catattctat gctgaaattt tcttttagct
      481 cacttagttt ttcaactaca aaataagaaa ttaaattaga aagagtatca tcattttttc
      541 tggcaaaata atcctttttt ataaaatgag tagcattatc gagtaaaata tttgcatttt
      601 cttttcctat aaatttccaa gccttatcaa gcaagaaaaa catataatca atttgagatt
      661 ctttaaacat tacacgattt atttcttttg cattggcaat caagcctaaa aaaacctttc
      721 caagttcaaa attttcatcc tcgcttagcc aaatatcaac agcattaacc acatcaacaa
      781 attttgaaag ttctaaaaca ggagtacaga ttttagagaa aaaatcataa acgattttag
      841 ttgcacatct tttagaatca agtaaatacc aagaatattt ttgagcacat tcttcgccac
      901 tttgatgatg atcaagaaga aaaattttag tatttttctc tttgcaaatt ttttcaaatt
      961 cttcgcattg atttaaattt aaatttaaat ctgttattaa aataatagct tttccgaaat
     1021 tttcatcttt ttctatatcg cctataatag agttaaaatt ttcattaatt tctttgccat
     1081 aattagaatt ataaaatttc acatttttaa aataaaaatt tactataaat tgacaagcat
     1141 agccatcaag atctgtatgt gaaagatgat aaattttcat tatattcctt aaagttctat
     1201 cctaataata ccctcggtat taaaatttgt attttctgca atttctgcaa aacttaacac
     1261 tactatatta atgctaaaat tataacaaat atcagcaatg aattttctaa gctgcggttc
     1321 aacgcaaagt ataaaaggct tgatacgacc atttgctact gcggcaactt cagcccttag
     1381 agtatctact aaagtacctg tttgagctac acttaaaggc aagtgataac ttccatctct
     1441 aaattgtaca ttttccatta aaaccgcaga actagcagag tctaagataa aaatatccaa
     1501 atttccttta tcatctaaat acatatttgt aatcatccta gctaaggacg cccttacatg
     1561 ttcaataatc atatcaaaac tcttgcttac ttctgctata tcgcttacag attctaaaat
     1621 agtaagcata tctttaattg gtatgtgatg cttaagcaag tctttgagaa ttttttgaat
     1681 aagacttaca ggtgcaacac ctaaagcacc ttctacgatg attggataat catttttaac
     1741 cttatcaaga agattttgta cctcttggcg tgtgagaagt tcgcttgcgt gcgctttgat
     1801 aagttcgctc atatgtgttg aaataacact tgcaggatct attactatat agccatttaa
     1861 tgttgcttca tcttttaaat tcgcatcaat ccaaagtgca tcagagttaa aagcgggttc
     1921 ttttgtagca atcccttcta tctcttctgt gataaaacca ctatccatgg ctaaatattt
     1981 atccggataa atttcagcac ttgctataga cacgcccttg agtttaaaac tatactcatt
     2041 tggtttaagt cttaaattat ctcttattct tatttttggc attaaaaatc ctaaactttc
     2101 agcaatactt cttctcattg agcgaattct ttctgtaagt tcgttttcag caagcttaat
     2161 aagtccgtat ccaagttcaa gttctaaaat ttcaactttg agtatatcgt taatcttgtg
     2221 ctcttcttct ttgagaattt cttcttcgct tttcttagca ggcgttgccg ttgtcccacc
     2281 tgctccactt tgagatgcag ctgcggcact tggtttgctt tttttaactg tagttatatc
     2341 aattttacct tccttaacct gcttggtaag atagccaagg cttaaaaata ctaaagccat
     2401 aaagcccaag gataaagttg gcaaaccagg cactaacgca aagataaaaa gtacaaaacc
     2461 tactattaaa agcgtgcgat attcgcttaa aagttgagtt aaagttcctt ctgcaaaatt
     2521 ttcctcatct ttgcttgcac gagtgataat tatagcggtt gcagtagaag taataagccc
     2581 tggaatttga gatacaagtc catcacctat ggttaaaata gtataggtag aagcagcatc
     2641 gcttaaagcc atatcgtgct gaaaagatcc tattaaaaaa ccacctatga tatttataat
     2701 agttatgata attcctgcaa cagcatctcc tttgataaat ttagaagaac catccattgc
     2761 accatagaag tttgcctcag caataacttc ttgacgtctt gctctagcgg tttgttcatc
     2821 aataagtcct gcatttaaat ccgcatcaat agccatttgt ttacccggca tcgcatcaag
     2881 tgtaaatctt gcttgtactt cagaaaccct tgtactacct tttgttacaa ccatgaaatt
     2941 aatcaatact aaaatacaaa atacaatcac gccaatgacc atatttccac caacaacaaa
     3001 ttctccaaat gctgctataa tctcactcac agcttcaggg ccgttttgcc cttcgcttaa
     3061 aatcatcctt gtggtagcta tatttaatga aagcctaaat aaagtgataa tcaagattaa
     3121 agttggaaaa gttgttaaat ctgtcggttt gggtatataa atagaaatta aaataattaa
     3181 taccgataaa gctatactta aagccaagaa aaagtccaaa ataggacttg gtaaaggaac
     3241 tataataata gctaaaatac aaactaaaaa accaacaata gtcaagcttt tagcttttaa
     3301 aacaggagcg attaaaggcc ccaagaaagg aaaaactaaa tcgactattt tattttttgc
     3361 cattattttt cataatatct tctaaagtaa tagaatctaa aaattcatct actttatttt
     3421 gtaaatttac taacataggc attaaggtgc aattttcttc tttattattt ggacaagtgc
     3481 caccactgca ttcaaataca ctgatatcct ttttttcagc actattaaca atttctttta
     3541 tagtatattg acttggttct ttgattaaaa caaaaccacc ttttgcccct ttaaaggatt
     3601 ttaacaagcc atctttagct aaagtttgta aaattttagc taaaaaactt ttaggaatat
     3661 caagctctaa agctaaagaa tctacatctt gaggtgtttc tttttgagaa atataaatta
     3721 aagaaagtaa agcgtattcg ctagctttgg taaatagcac agattctcct tgttataact
     3781 acagaaatag ctgtaattat aataaataat tcttagaaaa agacttaaat tttgacaaaa
     3841 ccttctaaaa aagataaatt cagtttattt tttgcttttt aagataaaat tacagttctt
     3901 taattttatt attttaccaa tcaggaggtc tatcatggct ttggattcgg ccaaaaaagc
     3961 agaaatagtt gcgaaattcg ctaaaaaacc aggtgatact ggttcaacag aagttcaagt
     4021 agctctttta actgcaagaa ttgcagaact tacagaacat ttaaaaatct acaaaaaaga
     4081 cttttcatca agattaggac ttctaaaact tgtaggtcaa agaaaaagac ttttatctta
     4141 tcttaaaaga aaagattata attcttatag taagttaatt actgaattaa atcttagaga
     4201 taaataattt ttaagccctt tttacggggc ttttgccttt taaatttctt cttttgtaat
     4261 cagttttata tatcaaaaac acaagaaaaa tcttacaaga tttccctttg tcctttggca
     4321 tcaggttcgc ttaaaatccc gttttgcgta agttgttcaa taatatttgc agagcggtta
     4381 tagccgattt ttaaacggcg ttgtaaataa gaaatgcttg tttttccatc ttctaagatt
     4441 actcttttag cttcttcata aagctcatct gcttccccat caaagctttc atttgttgta
     4501 acacctacgc tttgctgatc ctttaaaaag ctttcatcat attctacgct ttgttgatcc
     4561 tttagaaaat ccacgatttt ttctatttca aattcgcttg caaaaggcgc atgcaaacgc
     4621 actatagagc ttgttccagg aggagtaaat aaacaatccc ctcttccaag taaactttca
     4681 gcacccatag catctaaaat aactttagag tcaatttttt gccctacttt ataagaaatt
     4741 ctacttggta aattcgcttt aattagtcct gttacaacat caacagaagg tcgttgtgta
     4801 gctacaatca agtggattcc acttgctctt gccatttgcg caagtcttcc tatataaaat
     4861 tctacatctt tacccgcagt catcatcaaa tcagcaagtt catcgataat tactacaata
     4921 aaaggaagtt cttctccgcc taattctttc attttttcat tgtaattttc tatatttttg
     4981 gtttttgcat cagccattaa gcgatagcgt ctttccattt cagctaccat atttgaaagc
     5041 gcattgactg ctttttttgg atctgtgata acaggagtta aaagatgagg aatgtcatta
     5101 taaatgctaa attcaagcat cttaggatct atcatcatca aacgcaaggt ttttggagag
     5161 ttgcgatata aaagacttaa aagcatagaa tttatcccca cacttttacc actacctgtc
     5221 gttcctgcga tgagtaaatg cggaagtttt ttaagatcgg ttacaaaagc attgcctact
     5281 atatctttac ctaaagctat ggttaaagga cttttagcgt ttttaaaaac ttcactttgt
     5341 aaaatttctc ttaaataaat ggtttgaatt tcatcatttg gaacttctat acctacaaca
     5401 tcttttcctg gtattggagc ttgaatacgg attgattttg ccattaaagc catagttaaa
     5461 tcatcttgta aatttaaaat acgacttact ttcacatctg cactaggacg aaattcaaaa
     5521 gtagttacca caggaccaac ataagtgctt ataacatcgc cgcctatttt aaaacgacgc
     5581 aatttttcaa gaagattata aattttttta tctatttcac tttcattgat ttcttgtttg
     5641 tgttcttttg gattagctaa aaaatctaat ggcggcaagg tgaaatcttt tggtttttct
     5701 atttcgccct gctctatttc acgcaataaa gcttggttaa tagcaatttc tttggctaaa
     5761 actgcttttt gaagtttaat ttcttgatca tttgtttttt cattatcgat tttagtttct
     5821 gtattttgga taaaatcgag tgtatttttt tcttctataa ctatttcatt tatatttttt
     5881 ataggagtag gttctatata aggatgattt aactcttcta caatgggagc aaattcaaag
     5941 atattgtctg ctttatctag atttttattt tcatttattt tgtctgattc ttctgtttct
     6001 gttttaattg tttttgggct attaaaacta tatttattcc cttctataat atcgcttgaa
     6061 tttatcgcat catattcttc taatttttta atttcttgtt ttactttatt ttctaaaatt
     6121 tcattttgat aggctttgta ttcttgttct agtttttctt tttttatcaa attctctcta
     6181 agttcaagct cttttgtaaa aatttttggt ttaacttctt gattagaaac tggaatttca
     6241 atatttttac gtttataact tggctcatct aaatttttat ttgtatctat ttgctttata
     6301 tcttcaagtt ttttaggttt taaaaaacgt tcaggaatca tatctacctc ttcttctgaa
     6361 ataaaattaa aatcttcatc aagactaatg ctcattttac tagccttttg tgcgaaattt
     6421 cgcacttgtt gagaatgctc atgaacaaaa cttcttgatt cttttaaact ttgtttatca
     6481 atctctatgg tttcatctaa aatttgattt tttagttttt caaaattttc cttggccgtg
     6541 gtaattgaat ttttacttgc attgatattg ctatctttaa ttatctgttc taagttattg
     6601 gtttcccctt ttttgtttat ttgtaaattt ccataaatac tatcttgcaa aatatttaat
     6661 tttggaacta taggttctga tttacctaca tcttctttct cgttttctcc accaaataca
     6721 cgcataagta aagatttaaa agcttgctct acttttaata aataagtaaa atctaattct
     6781 atttttaaaa tttcttttgc aaattttgga aacaataaaa ccaaagaaaa tagtagaagt
     6841 aaaagagcga aaattccgct cccagtatgc cccaaaatag tagaaaaaat cgcataagca
     6901 agctctagta tatagcctga attaggataa aaaactgcaa ataaaagcaa actcgagaaa
     6961 aaggcaaatc ctataccaaa aagctctctt cttgtaaaat tagctaattt gtaatttctt
     7021 ttataataaa cataatttaa aataaataag aaaaaaggat aataatacgc aaattctcca
     7081 aataaaaata aattagcctt gtaaacccat tctcccatgc caggtgctag catacaaaga
     7141 caaagataaa aaataacaag cgtggagctg gtaaaaatgg cttctttttt aatattcttt
     7201 ccttgaaaat aaaatcaaag ccaaattata ccataaaaaa ttttacatat aatttaataa
     7261 gctaagttga gaaattgttg tactagcttt aagagaagct tgatatgcaa gttgaacttg
     7321 cattaaattc atcattgcct caccataatc tacatcaatc acatttgatt ttatactttg
     7381 gacattaacg cttaaaaagg atgtgcgtgt attaacacct tcgatagtat tatgatatgc
     7441 tcccatagtt gtattaagct tgctaacatg atctgctaaa tgatcaagtc tttctaaagc
     7501 tccttgcata cctgtatttc tagggttttc actttcggag tctgctctca tattgccttt
     7561 taaaacagca tcaatcattg aatctaaatc tttaataata tccacatttg gctcatctat
     7621 agttaaagaa ttattcgcgc taaaactaaa atttggacca ttttgtacag tagaagttgt
     7681 ggtaaaagga ggtgctggaa attggccact ttgagaatca ctaagagaaa tttctatatt
     7741 ggttcctgat gaaagtttat cagtaacact aatacgacct ttataatcca tacttacatc
     7801 aacagtagct tgtgaatctt tcatgagttg ttgtatttgg gtataatctg cattattaat
     7861 ttgaccatta ttggcttgta tggttgttgt aggaatttta tctgcagcaa acatacctat
     7921 aatatcatta atttgaccat aagtaatatc atttgatcct gtaacaaccc cactatttcc
     7981 agttgcagga ttagtatgca taataggaaa gcttatggtt tgacctggat tattaggatc
     8041 aggatagctt acagttgaag tttgtaaatt tatagtaaca tcgtaagaat ttccaccttt
     8101 ggaattgact tttaaattta aagtagtacc atttaggcta tctcctgcca ttacctcgct
     8161 aagtttggtt gaatcagtgg cataagcatt gcttcctttg ataacttgag aaacattacc
     8221 ataaacagta ttgccatttt tttcaaaata cacattatcg taatcagctc cattagcagc
     8281 atttccatct gtatctgtca ttttactttt gataaaatca gtttgtttta aatcaatttc
     8341 aaagttttgt ccgttaattt gaatggttac aggattattt aaatttgtaa tatctccatt
     8401 attgggattt cctagtgcag cagtcataac cctgtttgta acatcttcca ttgtaatgcc
     8461 ttcatcctgt gctgcttgga taatattatt taattcagtt ttatcatcag cttgtggtgt
     8521 gaaagctaca gcatgaaaat cgagtttatt attaccttgc tttagatctg taatttgaat
     8581 ttgaccacta tcattcatac ttacttctac tactttatta tttggagtat taccataaag
     8641 agctccaata ttttccatta catcttctaa agtatcttcg ggtttgacga gtacagcact
     8701 tttaaaactt gttccatcgg gtcttgtacc ttgaacataa agagttgttg gaggaaaatc
     8761 tagtttgcta tcatcatact caaagtcttt gtcagcatct aagctattat cttttacata
     8821 actttgtccg ataagttgtt gccatttaga atctcctgtg agatatttag ttttatcagg
     8881 gtctttattt aaatcccaac gattatctgt aaaactaaca ttagtgctta tttgtttttt
     8941 atagtctcca tctgctttaa aaaataaatc ccaacctggt atattgtatg ggctttcagt
     9001 tccagctcca gttactacat taatattatt tttatctcca taataatttc cattagaatc
     9061 aaaaggtttg tttgcaactt gagaacccgc aaaaagatac tgaccattaa cactggtatt
     9121 tgcaagctga actatgcttt cttttatacg ttctagttct tttgctatag cttctcttga
     9181 ggtttgagaa ttgctatcgc ttgcagcttg ggttacttta actttaaaat cttcaagaag
     9241 tttaaccata tcttgtaaag ctttcatact attttgagtc atttcttgag ctctacttgt
     9301 tgattctttt acttgttcta acgttttaat ttcatattca agacgcgtat tatctatata
     9361 agtgcttgca tcttcatatg aattttgtat tttcaaacct gaagcaagtt gttgagatat
     9421 ctgatataaa gcactttgac cgcccataga attattcaca ctatttgtga agttaagttt
     9481 atttgtaatt ctcatttttt tcctctaaag tattaaagtt aaaatctttt caaacattgc
     9541 taataaacaa aagcaataac tgttccaaaa atttaaatta tataatttta tattgtcttt
     9601 ttgaaaatac tttttatttt taaagtattt tttagcctaa aaaagtataa ttttagcttt
     9661 aaatcttaaa aatgagcccg agtggtgaaa ctggtagacg cgccagactc aaaatctggt
     9721 aagggcaacc ttgtgtcggt tcgagtccga cctcgggcac cacttatttt ttgcgggaat
     9781 agctcagggg tagagcacaa ccttgccaag gttggggtcg cgagttcgaa tctcgtttcc
     9841 cgctccatag agtaaaaaaa atataaaatc tctttaatta taaattctcg cttttctcta
     9901 atactaaaaa atactcattt tctagaattt caagttcttt ttgcattact tcaagctctt
     9961 gataaagctt gttaatacct atttcttgat atacatttgg atcggataaa tcttgattta
    10021 atttagctat cttttgctct aaaaaatcta ttttttcagg atggtttttt aatatctcat
    10081 tttctttgta gctcaatttt ttggagcttt tttctttttg gttattattt tgctcttggg
    10141 tttgaagctc taaagcaaaa ttatccaatt cttcaatttc tttttcattt tcaagatatt
    10201 cagtataaag agtgtgtaaa atatttatat atccatttcc ctcaaaagca taaagttttg
    10261 ttgcgatttt atcaacaaaa tatctatcgt gtgatactag caaaatagcc ccttcaaaac
    10321 taagtaagta ttcttctaat atattaatcg tagctatatc aagatcatta gttggctcat
    10381 ctaaaatcaa aacatcatat tctttagcaa aaagcaaggc taaagcaacg cgatttttct
    10441 ctccgccgct taaaagagcc acgcttttat ctaaaaattc cttaggaaat agaaaatttt
    10501 tcaaatatcc ataaacatgc atatttttac cacgaacttc aaccctatct ccaccattgg
    10561 gacaaaaaat ttcaagcaag cttttatcag aatttaccaa gcttctagcc tgatcaaaat
    10621 atcctatctt aagctctccg cgttttattt caccgctatc ttgttttatt tgccctagaa
    10681 gaatttttaa caatgttgat tttccacaac catttcttcc tacgatagct atgcgttcac
    10741 cttgtaaaat acgcgttgaa aaatctttaa aaagattttt attgtttata tttttgctta
    10801 tatttttaag ctcaaaaagc atttttttac gattgatcgt tttttctcca ttaaaattta
    10861 aagccgctct tgaaatttca agttttaagc gtttgattgc cccaggattt tttttcgctt
    10921 cttcacgcat tttaaaaatg cgttcttttc gtccttcatt tcttttaagt cttgctttaa
    10981 cccctcttct aagccattct tcttcgcttt ttaattgctt taaaagagtt tcatggctct
    11041 tagcaaggct ttgcaaaatt tgtgtttttt tctctaaata gtttgcatat ccgcctttaa
    11101 aaatactaag cttaccctgc tctacttcta cacacttgtg tgctatagcg tcaataaaat
    11161 atctatcatg ggaaataaaa atcacacaca tctttgaatt ttttagcaat tcttccaaaa
    11221 agcttgtcat atatacatct aaatgattag ttggttcatc aagcaataaa atatcaggat
    11281 tttttagtaa aagtatgcaa agcccaacgc ggcgtatttc tccaccactt aaagtagata
    11341 taatgcgatt ttcatactca agtaaactaa attcttttaa aacgcgtatt attttagatt
    11401 ctatactcca agcatcttta ctatcaatca aagtcataag cgtatctatt ttttgaagat
    11461 aatctttatt actaggatct tcttctaatt ttttatgcag tatttcatat tcttctaagg
    11521 tattgtaaat ttctacaagc tcttgcttga tggcttcttt tacgcttaaa tttgcattaa
    11581 aatcaacggt ttgtgaaagc atggctatgc tttttccatt ttgtcttatt attctaccgc
    11641 tatctaaagg aagtgtgcct aaaagcgttt ttaaaaaagt agattttcct tctccatttt
    11701 tgcctataat agcaatcttt tctccctcgt ttgcgctaaa atttacttca tttaaaacta
    11761 ttttgtctcc aaattttttt gaagcttcaa ttaaatctat aagagccatt ttttatcctt
    11821 gactgagttt aaagctaaaa ctagaaccat aacctaaa
//
LOCUS       DARBBO010000048        11688 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.048, whole genome shotgun sequence.
ACCESSION   DARBBO010000048 DARBBO010000000
VERSION     DARBBO010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11688)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11688)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11688
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.048"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..497)
                     /locus_tag="SB854_001063"
     CDS             complement(<1..497)
                     /locus_tag="SB854_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEG0957062.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLIKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKDFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILN
                     FNSKKILTKSFIYKGYKYIIIVYPRFLDLELFWTKMAIGFGVCLLFVFILMLLLGRRI
                     EKNFN"
     gene            complement(491..1153)
                     /locus_tag="SB854_001064"
     CDS             complement(491..1153)
                     /locus_tag="SB854_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG0957063.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLVSYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGIGYK
                     LC"
     gene            complement(1140..2723)
                     /locus_tag="SB854_001065"
     CDS             complement(1140..2723)
                     /locus_tag="SB854_001065"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEG0957064.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKFPKDELMQMLSD
                     IEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMIIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            complement(2720..3208)
                     /locus_tag="SB854_001066"
     CDS             complement(2720..3208)
                     /locus_tag="SB854_001066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957065.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            complement(3208..4878)
                     /locus_tag="SB854_001067"
     CDS             complement(3208..4878)
                     /locus_tag="SB854_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEG0957066.1"
                     /translation="MSEVNKKVQDGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQGDNSKLLFNVGDSIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNVAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDIGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDEFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELSSSPV
                     QEYAKIHKVGDIVKGAIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRIKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            complement(5010..5843)
                     /locus_tag="SB854_001068"
     CDS             complement(5010..5843)
                     /locus_tag="SB854_001068"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEG0957067.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGASTPDWIIQKVIAKIENFKI
                     N"
     gene            complement(5833..7119)
                     /gene="aroA"
                     /locus_tag="SB854_001069"
     CDS             complement(5833..7119)
                     /gene="aroA"
                     /locus_tag="SB854_001069"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEG0957068.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            complement(7116..9437)
                     /locus_tag="SB854_001070"
     CDS             complement(7116..9437)
                     /locus_tag="SB854_001070"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEG0957069.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSETLQIVCGAANVDAGQFVAVATKGAIMPNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIGLKEEIQTNLLLSLRLAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIEGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNGEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     AVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
     gene            complement(9434..10426)
                     /gene="pheS"
                     /locus_tag="SB854_001071"
     CDS             complement(9434..10426)
                     /gene="pheS"
                     /locus_tag="SB854_001071"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEG0957070.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            10549..10914
                     /locus_tag="SB854_001072"
     CDS             10549..10914
                     /locus_tag="SB854_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HEG0957071.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKYFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            complement(10944..11513)
                     /locus_tag="SB854_001073"
     CDS             complement(10944..11513)
                     /locus_tag="SB854_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1/PfpI family protein"
                     /protein_id="HEG0957072.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRAKELNPDLEVVIASLNS
                     ELLVKGANSISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(11513..11686)
                     /locus_tag="SB854_001074"
     CDS             complement(11513..11686)
                     /locus_tag="SB854_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957073.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNHQMMQKNKE
                     REERFKKYKKGEQ"
BASE COUNT         3892 a         2109 c         1346 g         4341 t
ORIGIN      
        1 ttattaaaat ttttctctat tcttctacct aacaacaaca ttaaaataaa aacaaacagc
       61 aagcatactc caaaaccgat tgccattttt gtccaaaaaa gttctaaatc taaaaaacga
      121 ggataaacaa taataatata tttatatcct ttgtaaataa agcttttagt gagaattttt
      181 tttgaattga aatttaaaat ttctccttct ttaagattag aaaaaaaatc aggatttttt
      241 acagaactta ttttcatatc attgtttagg ataataaaat cagccctagt atctttagca
      301 aaatccttga tattagcatc atttaaatgc tctaagagag aaaattttaa aacatcatca
      361 aggcttttga ttttttgttc atattgtttt ataagcaaga aattaagata agaattagta
      421 aaagtataaa aaataaaccc aaaaatcaaa gccaatacaa caaaaaaaac tataaaaata
      481 tttttagttt ttagcataat ttatagccaa tacccctaac acttataata tgatctttta
      541 gttttggaaa tttatttcta agtcttgtta gagctatatt gattgtttta tcacttgtag
      601 tatcatcttt ccaaacactt tcgcttaaaa attgtctagt aagcaaggta tttggatttt
      661 caaaaaaaca ttttaaaagc tcatagtcaa gatttgagat ttctaatttt tgatttttgt
      721 aaaagaattc ataactaacc aaatctaaaa taaaatcacc aaaagatagt ttttcttctt
      781 cttttttatg gcgttttaaa attgctttaa tgcgaagcaa aagctcattg aaatcaaaag
      841 gtttacaaac ataatcatca caaccacttt caaagccttc gagtaaatct tgatgtaaag
      901 ccttggctgt aagaaaaata actgcttctt tatatccttg ctctcttaaa tcttgaattt
      961 tttctaaaga atctccactg ggcaaatttc tatcgactat taaaagatca atttgctcat
     1021 tatcgagcaa atcttcaact ccaaaaaaat ccgctaaaga tataacttca taaccactag
     1081 attttaactt taaaacaagc agttcgttta aatctatatc atcttctata attaaaattt
     1141 taaatttcaa catattggac aaatacacac gcctctaatt gttttagttc atctaatact
     1201 tctttttgaa ctttttcatc aatcaaaaca acagccaaag catacccaaa accatctcta
     1261 ccaagcctaa aatcagctat attgatattt ttagctgcca aaacggaact gattttagct
     1321 ataactcctg gtatgtcttt gtttttaaaa ataatcattt ttccctttgg cttaaaatca
     1381 gttttaaagc catttaatcc aactatgcgt tgttcatttt cattaaacac tgttcctgaa
     1441 acactgatat ttgaattttc ggtgataatt ttaacgctaa gtttattatt ataaccacta
     1501 tttggaagag tttcgcaaga taattcaact cctttttctt tggcaacaaa ttctgcatta
     1561 acataattaa ttttctctcc taaaattcca cccaaagcac caacagctgc aaaagttagc
     1621 atagaatttg catactcacc aataattcct tcagcctcta atttaatact ttttatagga
     1681 tttttatcaa tttgaacagc taaaaaagcc attttagaaa caagttctat ataaggagct
     1741 acaaaaggtg gtaaatcttc agttttaatt ggtaaattta aggcattagg ataagccacg
     1801 cctcgtgctg cgcttaatgc ttgctcacaa gcttctcttg cgatattgtc ttgactttct
     1861 aaagtatttg ctcctaggtg agaagtaact gaaatatttt caaagtctaa aagaggatga
     1921 ttagtcgcgg gttctttatc gaacacatct ataccaagcc aagctatttt accacttttt
     1981 aaaccttcat ataaagcctc ttctgtgtac aatcctccac gagcacaatt tattaatctt
     2041 attccatctt tcatttttgc aatttcttgc tttcctatca taccattggt ttctttggtt
     2101 tttggtgtgt gaatggtaat aaaatcactt ttttctaaaa tttcatccaa attttttgct
     2161 tgttccatat ctaaatctgt aatcttagaa gcagaaatat acggatcata ggctaaaatt
     2221 ttcataccaa atgctttagc acggatagct actcttgaac ctatatttcc aaaacctata
     2281 acccctagcg ttttattcat caattcaatg ccataccatt tttctctttc ccattttctt
     2341 tcaattttta aaaaattatg agcattgaca aagcttctag ctgatgttaa aagatgtgcc
     2401 attgttagtt caactgcggc aatagtattt gcagttggga cattcatcac aatcactcct
     2461 cgtttagaac actctggaat atcaacatta tctacgccca ccccggcacg cacaagcgct
     2521 tttaattttt tggcatgatt taaaaaattt acatctacat ccgtagaact tctagtaatt
     2581 gcaacttcaa tatcgcttag catttgcata agttcatctt ttggaaattt tgcagcttct
     2641 ataagctcaa tatcttcagc ttttcttaga atatcgacac ctttatccaa aatagcatca
     2701 cacactataa tctttttttt cataaccaaa tttcctttac ttctgtattt attttatatt
     2761 tttttaattc tttgataata tcatctataa gtttttcatt gcctgtatcc aaaaagattt
     2821 ctggactatc gccagattta agaagaaaat acttcacatt aaaagaattt aaagtctgtc
     2881 ttaagcaaaa catagaataa atatcatatt ttccaactat aagttgataa tatttatttt
     2941 tctccttaag ctcgctagta tccgcatcaa aatataaggt aaatttttct gctgctgggg
     3001 taaaatctct tgtaggccat tttgctaatt cttcttgcca tgaaagatct tgattttggg
     3061 tttgaatgct tggctgcgta tttgtatctt tagcaaattg tggaatgaaa tttacattag
     3121 ctttaaattg ccaaagcaat gtaaaaacaa cagcaagcaa aatgagtaat aaaatactca
     3181 aaatgcttat tgtaatgtat tttttcatta agctagctga tctttaatga tatcacctaa
     3241 agttacttta tcatcattat tgatttcatt aagaacttct ctttctttta ttctaacaag
     3301 atttttaaca cttaggcgaa ttctattttt cttttcatca ataaaaacta tagcagcttc
     3361 aatatcgtcg ccaattttta aattttcaag catagaagtg cttatatctt ctttatgaat
     3421 taaagcatca acatttttac ttagctctac aaaaacacca aaatctttaa tatcacggat
     3481 agcacctttt acaatatcgc cgactttatg aattttagca tattcttgca ctggagaact
     3541 gcttaattct tttgtactta atgatatttt ttggttttct tcatctattt tgataatttt
     3601 taccttgatt ttatcccctt gagagaattt gtctttgcat ttatcgtttc tatcccaaga
     3661 agcatcttca ttatgcaata aaccttcaat accaccaagt ttaacaaatg caccaaaaga
     3721 agttactgag gtaatttctc cttcaactac atctgcaatt ttgtaagatt tcataaattc
     3781 atcaaaaggt ctagaaagta aatttcttaa agaaaccctt aagcgtcttt catttggatt
     3841 gatttcaatt acttcaacat caatttcttg acctttattg atataatctt ttggattttt
     3901 aatattttta tcccaagaaa tttcactgat atgtaaaaat ccttctatat catttcctaa
     3961 atccacaaaa gcaccataag gctctatatt tgatactatt actttaatgg tatcacctat
     4021 atcaagagta tcttttatct cgctccatgg atcaggtaaa gccgctttta tagataagga
     4081 taaatgtttg cgttctttat catactttat tactttaact ggaactttat cgccctcttt
     4141 ataaagtgtt ccagggttta caggtccttt gtaagaaatt tcgctgtaat gaacaaggcc
     4201 atcaacacct cctacatcta caaacatacc ataagtggta atttttttta caataccttc
     4261 aattaaatct tcttgttgtg ctacattatt gatcaattct tttcgttttc ttctctcatc
     4321 atctaaagtt tttttacgag aaacaatgat actttgctca tctttgtcga ttttaataat
     4381 tttaacttta aacgttttgc ctataatatt atttgtttct ttaaagccat attgagattt
     4441 tggtaagaaa aattcaacat cattttcatc aacaactatc aatccgcctt tattttttcc
     4501 aactactttt acggtaaaaa tatcatcttg attttcttga tagtttttaa taaattcaat
     4561 aactttttct tttctcaaag cttttttatg agaaagtaaa gatctgccac cacgagaacc
     4621 cataacagca actttaatac tatcgcctac attaaacaat agcttagaat tgtcaccttg
     4681 tatttcgcta agagctaaaa taccttcaga ttttttacct atatctacat aaacttcatc
     4741 atttttgatc tctacaatca caccctctgt tgtagcctct tctcttgatt tatcaaaagc
     4801 ttctaaaagc tgtccaaaat cttcttcctc aagataatca tctacgccgt cttgaacttt
     4861 tttgttcacc tcgctcatta tggtccttta aaataatttt tagaaattga ttgattttac
     4921 cttatttttc tttaattagt gttaagtttt tttatttttg ttaatttttt ttaaattttt
     4981 gactttttta ttctatttaa aaacattttt taattaattt taaaattttc tattttggcg
     5041 ataacttttt gtataatcca atcaggagta ctagcacctg cactaatgcc acaatgtttt
     5101 ttatctaaaa accattcttt ttttaactct tcttcggttt caattagata gctatcttca
     5161 caattggttt ttgcaatcaa aaaaagttgt tttgtattgg ctgagttttt accccctaca
     5221 acaaccataa catcactttt aagcgagagt tctttaatgg catcttgatt tttaaaggtt
     5281 gcatcacata tagtgttaaa aactcttact tctttggttt taagtattaa aaaatttact
     5341 atctccataa aatgctcagg cttcttagtt gtttggctta ctacagctat tttattagga
     5401 agttttatat tttgaagttc ttttttatcc aaaactacat aagcttttgt acttacataa
     5461 cttttgactc ctttaacttc gggatgattt tcatctccaa aaataacaac ttcataaccc
     5521 tccttactca tttgctcgca aatttgttgt ggttttgtaa caaaaggaca agtggcatca
     5581 aaaatttcta tatctttttt tctcaattct tctaaatctt gctttgtaat accatgagtt
     5641 cttataatag cctttttttc attacttaaa gcttgtatat tttccaaagt tttgacatta
     5701 aaattttttt gcaaacgaga aatttcttcg ttattgtgaa taagagggcc tatagttgca
     5761 gcatctttta tttgttctgc ttttttaata gctcttttaa caccaaaaca aaaaccatag
     5821 ttttttgcta attcaataat caatcctagc tcctaaattt gataaaatct ctataaaatt
     5881 tggaaaagaa gtttttatac aatcactatc atcaatctcg attccacaaa gcaaacctaa
     5941 aatagcaaaa ctcatagcaa tacggtgatc tccatagctt ttaatttttg aagattttag
     6001 ttcgcatcca ccttctattt caaaaccatc atcaagttct ctagcttcaa caccacaaag
     6061 ctttagattt tcaaccatca cagcaatcct atcgctttct ttaacgcgta attctttagc
     6121 atttattaaa ctagatttac ccttagccaa agcaaaagct atagccaaag caggcgcttc
     6181 atctattaac caagcgatat tatctttaac ttctatgcca ttaagcttgc tagactccac
     6241 cctgatctca ccaatagttt caaaatcatt ttgagttatt gtcatttcaa gtttggcacc
     6301 cattttttgc aaaattttat acgcctctat acgagtagga ttaagcaaaa tattttttaa
     6361 aataatttga gatttaggta aaataatagc tgctaaaaca aaataaaaag ccgaagaagg
     6421 atcattagga atgattatat tttgagcttt taaaggtttt tttaaaggat ttatttcaag
     6481 acttaagcca tcattactaa cccttattgg agctttcata gcctttagca tgttttcact
     6541 atgatttcga ctaagagaaa tttcactaaa agtgcataca ttatcagccc taaaagcaga
     6601 taaaatcata gctgttttaa cttgagccga agaaatttcg cttttaaaat taaaagcttt
     6661 taatttttga ccttctatac aaagtggagc taaatttgcc tcatttcttc cataaattct
     6721 agcgcctatt tgagtaagtg gtttgcttat ccttctcata ggacgattgt ttaaatactt
     6781 atctccactt aaaacaaaaa aaccagaaat tcctgctaaa aatcctatca tcaaacgcat
     6841 agcagttcct gaatttccac agtctaaaat acaatttgga gataaaattt ctttaggggg
     6901 tataattttg acgcaagaat ctttttgttc aattttagct ccaagatttt ttataatttc
     6961 aagagtgttt aaagtatctt gagctaagag ataattttga gccttatttt cttcttgtgt
     7021 taaaagcgaa aatatagcaa aacgatgaga tatgctttta tctgctgcta tattttcaag
     7081 tatagcattt acaggggttt gcaatttgta aattttcatc ttaaatcaag acccaaattt
     7141 ttaagagtat ttaaaatttt atccatacat tcattcactt gattatcttc tagagtttta
     7201 tttatatccc taaaagaaaa acttatagta atgctataaa attctttaag gttttcatca
     7261 ctataaatat caactaaacg aaaattttca agtatttcta aattcaattc ttcgatacaa
     7321 tttttaatct gattgtattc aaaaccttta ggtattaaca cgctaagatc tctagtgata
     7381 gctgggaatt tggagtaagg cttagctatt ttaaaatctt gcctgattaa atctaaatca
     7441 agttcgcaaa tatatgtttt tggtaaatct ctctcatttt ctatttttaa atgcaaacgg
     7501 cctataaaac ctactttaat atccgataga taaatatctg cttgttcata agggcttaaa
     7561 atattatatt ttgatgattt tagtttaaaa tcacctataa tatttttaat atctaaaaga
     7621 aaatcataaa attgcaccga ttcaggtttg gccttgttgg aaattttagc ttcttctttt
     7681 aagccagaat ggataaatgc aatacgattt aattcttgat tattaacatt gaaaacagcc
     7741 cctaattcaa aaagtttaat aattttttta gaattttttg catttaaact tgctgcattt
     7801 aacaaatgat ttaaaagggt tgttcttaaa gtattaagtt ctgctgtaat tggattgatt
     7861 agttttaatt taacagagtc aaaacctaat cttttaagtt cttctccatt atccaaaaca
     7921 taatgtaagc tttcaaaata accactagct actgctcttt ttcttaaatt taaaaactca
     7981 atataatttt tatatgcaga atttaaacga tttttttcta taaattctaa acccttggaa
     8041 gcaatattat caatacctat aattcttaca acttcctcgc aaatatctga taaattttta
     8101 atatcaggac gatgtaaagg tgctttaaca tttataagcc cttcacctga aagtatgagc
     8161 tcaaaaccta atttctttaa tatttttaat acttcatctt tatcaacatt ttgtcctatt
     8221 atatcgctaa taccttcaat acttattggt atgattggta attctttgtc agttaaaatt
     8281 tgttgagaag aactataaat aacaagattt ggaatctgct caaaaatacc aagcaaaaaa
     8341 tccattccta aatttaattt aggttcactt cccctaaaac ttctataaag cattttttca
     8401 tcttgatctt tatgatatat tttagcatct gcaattacca atggatcggt ataattagcc
     8461 tcaataataa ttattttaga atcatcttta catctacttt cattattttg gaaaattccg
     8521 ctaaagctta aaagtttatc tttgtaagat acttttgttt ctccatgcac ttgcttgctt
     8581 aaattaatgg taaattcttc atctttttca gaaaaactac ttaaatcata agcattaaaa
     8641 agaacaccag ttgaatgcgt tgcataattt aataaatttt ctatggaatt ttttcccaaa
     8701 ccttcaattt gagcaagtct taaactaagc aataaatttg tttgaatttc ttcttttagc
     8761 cctatggctc gataattata aagtccatta agttctttct cagctgctaa gcgcaaaatt
     8821 ctaccgatac ctaaaacatt ttcactttct ttaaatggtt ttggttcttt taaatttaaa
     8881 tttaaagctg cggctaaatc acgagctata ccataaatac ttaaacaatc acccctatta
     8941 ggagtaagtt ccacttctat tagctcatca ttaaaaattt cataagtatt taaaggtctc
     9001 ccaagttcta atttccctat actctcatct aaaagcataa ttccttcatt gattttttca
     9061 aaacccagtt ctaaactaga acaaagcata ccacaagaat ccactcctcg caattttgct
     9121 tcttttattt ccataccgtt tggcatgata gcacctttag ttgcaacagc tacaaattgt
     9181 cctgcatcaa cattcgcagc accgcagaca atttgcaagg tttcacttcc gatatcaact
     9241 tgacaaatgc ttaatttatc tgaattttca tgtttaattt tttccttaac atagcctaca
     9301 acaactttat ctggagcctt taaagcacca accctatcaa cttctatacc tatagagttt
     9361 aaagttttag ctattttatc tgaacttatt tcttcaagtt ctaaccaatc attcaaccaa
     9421 cttttagtaa ttatcatcta aactgctcca ataatctcaa atcaccttca aataaagatc
     9481 ttaaatctgg aatttgatgc aaaagcattg caaaacgttc tactcccaat ccaaaagcat
     9541 aaccacttac attttcataa ccaacaaaat tataaacatt aggatcaact attccacatc
     9601 ctaaaacttc aagccaacct gtatgtttgc aaactctaca accctttcct ttgcaaaata
     9661 cacaagaaat atcaacttca gcagaaggtt ctgtaaatgg gaaaaaactt ggacgaaaac
     9721 gaactttcac atctccaaac atataacgca aaaaatcttc caatacactt tttaaatttg
     9781 caaagctaac cttttgccct tcttccacca caaggccttc aacttgatga aacataggag
     9841 tatgcgtaat atcaaaatct cttctaaata cagcaccagg ggctatcatc ctaataggag
     9901 gtttttgcgc aagcattgtc cgtatttgca ctggcgaagt ttgtgttctt aaaagccttt
     9961 tatcatcaaa ataaaaggta tcttgcatat ctcttgcggg gtgagattta ggtaaattta
    10021 acgcttcaaa attatgaaag tcatcttcta ttaaaggccc tttttctatg ctaaaattca
    10081 aagctataaa atattctatg attttatcca tggtgctcat aacaggatgc aaggcacctg
    10141 ttgtaatact ttcatcaaaa tagttaaaat ttaaagcatc ttgtttcatt ctttcttcta
    10201 aagcaagatt ttccaaatct ttaaatttgg ctaaataagc ctcattaaat atttcttttt
    10261 gtgcgtttaa tttagcagca aattcttttt tcgcctcatc ttctaactct ttaagctttg
    10321 taaagccttc tgttaaaata cctttttttc caagaacgga aatcctaatg gcttccaaat
    10381 catttaaatt ctcacatttt tgaatctgtt ctataaaatt ttgcaatttt cttaccttaa
    10441 ataaaatatt tcaagttcta attctattaa aaactatttt aaattcagca taaaaaccaa
    10501 actttaaaga tataattgta tcaaaccaac aataaaaaag gataaataat gcaagaaaaa
    10561 acaatttttg aactcatagt tgaaggtaaa cttccatgca ataaagtgct tgaaagtgac
    10621 gattttctag catttcatga tattgcaccc aaagcaccca tacatatact tataatccct
    10681 aaaaaatatt ttaaagactt tcaagaattt gatcctgaac ttatggccaa aatgacaagt
    10741 ttcatacaag aattagctgt tcttttaggt gtagataaaa gtggatatcg cttggtaaca
    10801 aactgtggaa aaaatagtgg acaagaagtt tttcatttgc attttcatat gctcggaggt
    10861 tttgaactgc ctaaggaaaa aacaaaaaaa gaaaatcctc aagctttatt ttagtttaaa
    10921 tggtagaaaa actaccattt aaactatttt gtcaaaggta gcaacattcc ctcatataat
    10981 ttttgataaa tttcatcacc gcataacttt ttagctagtt ctaaaccaaa aagaattgcc
    11041 gtagctggac ctgctgaagt tataacattt ttatttacaa ctacagcctt gttaacacga
    11101 tttccattaa gtccaacttc acaactagga taacaagcaa actcgccctc taaaacacct
    11161 gcttcattta aaactatagg agaagcacag attgcggcaa caattttatt tttgctatga
    11221 agttgtttaa tgatatttaa aataacattt gaattcttaa gattcatcat accttcaaag
    11281 ccacccgcca aagcaatagc atctaaattt tctatatcaa catcctctat agaacaatct
    11341 gcttttatac taatgctatt agcacctttt accaataact cactgtttaa cgaagctata
    11401 acaacttcca aatctggatt taattctttt gctcgtttta aaacatccgc aattcctata
    11461 aattcagctt cttcaaaacc ttgagccaat ggaattaata cttttttact cattattgtt
    11521 ctcctttttt atatttttta aatctttctt ctctttcttt gtttttttgc atcatttgat
    11581 gattgaaacc tataaccaaa acaatcatta aaaacacaaa aataactatt agaatgaaat
    11641 ctaaaatttc cataaataca accttatttt tgggaaattc taacacat
//
LOCUS       DARBBO010000049        11450 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.049, whole genome shotgun sequence.
ACCESSION   DARBBO010000049 DARBBO010000000
VERSION     DARBBO010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11450
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.049"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            76..291
                     /locus_tag="SB854_001075"
     CDS             76..291
                     /locus_tag="SB854_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HEG0957074.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
     gene            301..1398
                     /locus_tag="SB854_001076"
     CDS             301..1398
                     /locus_tag="SB854_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CZB domain-containing protein"
                     /protein_id="HEG0957075.1"
                     /translation="MFGSKINHSDLQKLEEENKNLTHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIIQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGNITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(1430..2026)
                     /locus_tag="SB854_001077"
     CDS             complement(1430..2026)
                     /locus_tag="SB854_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEG0957076.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFVEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(2109..4172)
                     /locus_tag="SB854_001078"
                     /pseudo
     CDS             complement(2109..4172)
                     /locus_tag="SB854_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838239.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
     gene            complement(4315..5253)
                     /gene="accA"
                     /locus_tag="SB854_001079"
     CDS             complement(4315..5253)
                     /gene="accA"
                     /locus_tag="SB854_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyl transferase
                     subunit alpha"
                     /protein_id="HEG0957077.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVAGLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADKLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKAMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
     gene            complement(5255..6469)
                     /locus_tag="SB854_001080"
     CDS             complement(5255..6469)
                     /locus_tag="SB854_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEG0957078.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFSEELDKEEFGIVS
                     ASGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMVLRDGVVPPTINQLVKDDECDLDYIPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            complement(6496..6729)
                     /gene="acpP"
                     /locus_tag="SB854_001081"
     CDS             complement(6496..6729)
                     /gene="acpP"
                     /locus_tag="SB854_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG0957079.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            6839..7507
                     /gene="tenA"
                     /locus_tag="SB854_001082"
     CDS             6839..7507
                     /gene="tenA"
                     /locus_tag="SB854_001082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HEG0957080.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDIK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVSAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            complement(7531..8388)
                     /locus_tag="SB854_001083"
     CDS             complement(7531..8388)
                     /locus_tag="SB854_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoB--CoM heterodisulfide reductase iron-sulfur
                     subunit B family protein"
                     /protein_id="HEG0957081.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     TFLAKGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDIF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKETVGLDY
                     NIIDVSKIA"
     gene            complement(8392..9357)
                     /locus_tag="SB854_001084"
     CDS             complement(8392..9357)
                     /locus_tag="SB854_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HEG0957082.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGAIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEGHKDLVKMIKAAQEAAVKE"
     gene            complement(9354..11189)
                     /locus_tag="SB854_001085"
     CDS             complement(9354..11189)
                     /locus_tag="SB854_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding protein"
                     /protein_id="HEG0957083.1"
                     /translation="MGEFSRRDFIKTACISVGALAASSSGVYALDDSSKMDKDINLPS
                     CDVLVIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FEKGAKTHELAQKWQVRFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKKLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
BASE COUNT         3891 a         2233 c         1493 g         3833 t
ORIGIN      
        1 agctaaaaat atcttttaat agtgtaaaat accttgttaa atgaatttta aatttcacta
       61 atacaaggag agtttatgct acatgaatat agagaattaa tgtcagagct aaaaggtaaa
      121 gatgctcatt ttgataaact atttgatcgt cataatgaac ttgatgacat gattaaagat
      181 gcagaagaag gtagaacttc tcttagcagc atggaaattt caactttaaa aaaagaaaag
      241 cttcatgtaa aagatgaact tagccaatat ctagcaaatt ataaaaaata aggcaaaaca
      301 atgtttggaa gtaaaataaa ccattctgat cttcaaaaac ttgaagaaga aaataaaaat
      361 cttacacata aaattgaaaa atttcaatcg gaaaatttag aattaaaaaa taaaattaca
      421 tcattagaac aagcggcttt agagtctaaa cttaaaacag atcttttaaa tgttttatta
      481 actggggttt taaaaaatat tactattatt caaggcgata tgttagaaaa tgtaaataag
      541 gcagaagtta tctctagcta ttctaaaact tctcttgctg aaatggatga acttaaccat
      601 attgctaatt ctatcaatgc ctctttggga aatattacag aatcagccaa taaaacaaga
      661 gatgttgcag gaacattgca tagaagtgta gatgaaatta ctaatgtaat taatctaatt
      721 aaagatgttt ccgatcaaac caatctttta gctcttaacg ctgccataga agctgcacgc
      781 gcaggtgaac atgggcgtgg ttttgctgtt gttgccgatg aagtaagaaa actagctgaa
      841 aaaacacaaa aagcaaccac agaagttgaa atgaacatca accttctaaa gcaaaatgca
      901 aatgaaatgt atactcaaag tgagcaagtt gaaaaaattt ctatagattc taatgctcat
      961 attatgagtt tttccgaaaa atttactcac ttagtaaatg aagcgcattc tactaattca
     1021 aatgcagttg gtatcgcttc agaagctttc gtatctttag caaaactaga tcatatagct
     1081 tttaaattaa atggttataa agaaattttt tccaaatcag gaaagcaatt agccgatcat
     1141 acatcttgtc gcttaggaaa atggcttgct agcacaggaa aagaaagatt tgggcaaaat
     1201 aaaagcttct taaaaattaa cgagccacat gaaaaagttc atgaaaatat gaataatgct
     1261 ataacaatag caaatacaga agatattagc aaagatatta ctcaacacag cataattaat
     1321 aaatgcgaag ttgctgaaaa tgcatcgctt gatcttttca atgtatttaa agaaatgctt
     1381 gatgagtcag atcattaaaa tcctaggttg aaccttttta aggtttaacc taaataatct
     1441 ttaattttcc ccacttttcc tttaaaaacc acatataagc aaaatcaagc aaaggcgttc
     1501 ttatcatatt tttacatttt ttttcaaaat cctgcacctt aacataaaca gcttcaatct
     1561 cttcatcatc aactccacct ccagaagaaa ttttatcttt ttcatcaact tctacgaaat
     1621 aaaagctttg cttgcttaca cctgaaccaa accctgtata aaaatctcct attttttcta
     1681 aatttttagg agcatatcct agttcttcta tacattcttc ttttgctatt tcctctaaag
     1741 ataatttttt atccacaagc ccagaacaaa gctctatagt ataacccata tcatcatctt
     1801 ttacataatc tttatcatgc atttgatgat accaaagtgg tatacgaaat tggcgtacaa
     1861 aaataaaact ttctaattct ttatgataca aaagcactga aacactatct ttagattcta
     1921 taaaatccca agtgcaaagc ctaccattac tttcataagc aaatctctta ggcttaatat
     1981 aatttgattt ttcaaaagaa agttctttta aatttttaaa cgccataata aaacctttta
     2041 tttatttttc acattgtact ttatttttgc ttttttgaaa atataaaggt gattaaagcc
     2101 ttaaaaaatt aaaaatcata tttataactt aaccaaaaac ttcttccttc tgtataatct
     2161 tgatagcgat ttgcatatcc agcaggatta gccccatccc atcttgtaac ttgcggatca
     2221 aagaaatttt tatcaaaaag attttgcact gcaaaactta agctagattg cttattgatt
     2281 ttataattta tccctaaatc tactatataa aaaggcttat atttttgcca tggcaaacta
     2341 ccattaccac caactcttgc tttagctata gtatcgagtc ttgctcgtgt ttttatatag
     2401 gaattaaatt tacctcgctc atagtttaat tttaacattg ctatatgcct tggtaaattt
     2461 tctattctat caccaccaaa ccaatttttt tgactatctt tatagcgatt atccataaaa
     2521 gtataacttg aatttaggct aaaaccattg taagttttgg tattaaatgc aaattctata
     2581 cctttagtct gtgtttttcc aagattaata ggacgcttac aaacagtgcc attgctacaa
     2641 ttaataccat tttgcatacc tgttaaatat tcactactga tttgatttgt aaaatcagta
     2701 ataaatcctg tgatagaata atgtgcaaaa tcaaataccc taaaatcagc acccaattca
     2761 taatttatac tttcttctgg ttttaagtca gggtttccaa aaagagcatt gccattggca
     2821 taattataat atccatttgt caactgcttg gcagaaggag ttttatagcc ttttgaaaca
     2881 cctcctttaa aggctatatt atcatttaag tgataaacca aataaatcct aggggtaaat
     2941 tcagaatcaa acaaattgct ataaatataa cgcaaacctg tagtaaaaat caaatcatcg
     3001 gttataaaat actcattttc cccataaagc gcaaccatgg tttgatcaag atttttacct
     3061 cttatttaac tacctgcgct tgcttgatca ttttttaaca tctcataatc aatccttgca
     3121 ccaaaggtat ttactaaatt accgtattga cctaaattcc aaggtaaaac aaccttacct
     3181 tctcctaccc aaatttgact atgtaattcc ttatccttag tgctaccata ttgtaaatat
     3241 gagttagttg aaccaaaatc atagttacca tcatgattta aaacaatatt atccttaaaa
     3301 agttgttttt cacttttaat agccctacta cttatagaat tcactgaaat ttcattaata
     3361 tatcgctcta tatcaaaata tatattattt ttatcatcta ctgtccaatt aagcctagaa
     3421 ccaaaaccta agctagtaaa agcacctgga ctatgaatag caatttggta attatcaggt
     3481 ttttgattgt tattattcca aaccggtgta ggccatttta aatcagaagc tgccttatca
     3541 taatacttca accttgcaga aattgataat gtatcttcaa tcaaaggagt tgctacataa
     3601 gcattaaaac cgcccgcatt gccatagtga ttagagtgct gttgcaaaag agtattaaat
     3661 tgtatatttg cttcgatttt atcaggattt ttcttggtga taatatttat cacaccgcct
     3721 acagcatcac tgccataaag tgtagaagct ggaccacgta taacctcgat acgctctatc
     3781 atagataaag gcggcagata tcctgactca ctgcctttaa aaacattagt ataaaaccca
     3841 tttgcaacac tttgacgttt tccatcaatt aaaactagag tataagaact accaaaacct
     3901 cgtatgctaa aatcataagt gcctgtttta tccatagtca catctacacc tggaatatct
     3961 cctatagcct cccctatatc cttaattggc tttttttcaa gctcttcttt tgtaatgata
     4021 gaaatactag caggcgcatc aaccaaatct tgttcaaaac cactagcgct aaccacaaca
     4081 tcattaagtt gatatgtttc ttctgctttt aacaaagctc cagataaaat taaaaaacac
     4141 agtaaacttt ttttaaattt catatttttg atttgagtca aattaattcc tttaaaaaaa
     4201 attattttga tatttaaaat catttttgga gtataaaaaa agaatacttt taattaactt
     4261 aattttgata acaattataa ataataaaat tatttaaaaa agcgaagtaa aagcctaagc
     4321 ctcttgatag gctccaagct ttaaaatttt ctgcatacga tttgcagaaa gttctcgtac
     4381 atcaatattt tcaagttcat ttagggattt ttttacataa tcagcaatag ctactgctgc
     4441 agcttcttta ttgcgatgtg caccatttgt aggttcgtct atcacatcat caattaaacc
     4501 ttgagatttt aaatcatcag ctgttacttt catagctttg gttgcagctt cactttttgc
     4561 aggatcattc caaagtattg cagcgcaacc ttcaggagaa attactgaaa aaacagaatt
     4621 tttcatcatt gcaagtttat ctgcaacccc tatagctaac gccccgccac taccgccttc
     4681 tccgataact atagcaatgg tcggtatttt caaatcactt aattcatata aatttctagc
     4741 gatagcttca ctttgtcctc tttcttcagc acctattcca ggataagcac ctggagtatc
     4801 tatcaaaaat aaaataggaa tttgaaattt ctctgcaagt cctgctactc ttaaggcttt
     4861 gcgatatcct tcaggatgtg gcatcccaaa atttctagcg attttatctt ttgttccacg
     4921 tcctttttgc tcaccaatta caattatttt tttctctcct aaataaccca taaaacaaac
     4981 aatagcagga tcatctctaa aggcacgatc accatgtatt tcgtgagcgt catttaaaat
     5041 aagttcaata tagtcaagag cataagggcg atctggatga cgcgctaatt gcaaacgctg
     5101 aaaatcactt aaattcttat aagttttaga aatttctttt tcaagatttt tctttaaaat
     5161 tgatacagct tcagtatctc ctttaatctg agcattgata atgtcctcgt caatttgctg
     5221 aatatttttt tcaaaatcta aataagaagc catattaatc tactttttta aatacaacac
     5281 agccatttgt gccaccaaaa ccaaaagaat tactcatcac cacttttaaa tctacttttc
     5341 ttgatatatt tggaatataa tcaagatcac attcatcatc ttttacaagc tgattgattg
     5401 taggtggaac taccccatct cttaaaacca taacactaac aactgcttca attgcacctg
     5461 cagcacccaa gcaatgacct gtttgtcctt tggtggaact tataagcggg atattattgc
     5521 caaaaagctc tttaattgct gctgtttcat ttttgtcatt tacaggggtt gaagttccat
     5581 gtgcattgat ataatctacc tttggattcc ctgccatatt taaagctttt ttcatagccc
     5641 ttaaaggccc atctaaagtt ggtgaagtaa tatgatgcgc atctgcactt tctccaaatc
     5701 caattaattc agcataaatc gtagcaccgc gttttttagc ctcttcatat tcctcaaaaa
     5761 ctaaagctcc agcaccttct cccatgacaa aaccatctct ttctttgtca aatggtcttg
     5821 aagcatgctg tggatcttca tttctagttg ataaagcttt cattgaagca aaaccaccta
     5881 tacccacagg acaaatcgca gcttctgcac ctatgactaa catcttttta gcatttccca
     5941 aagctatact tttataagct tctcctatag catgagttcc tgctgcacaa gctgtaacac
     6001 aagaaatatt tggcccttta agtccatgct ctatagaaat caaacctcct aacatattta
     6061 caagtgctga aggtatgaaa aaaggggaaa ttttacgcgg acctcgctcg gaacaaataa
     6121 tggaattttt ttctatgtta ggcaaacctc caataccaga agccgaaaca atgccaaatt
     6181 cttctttatc taattcttca ctaaatccag catcctgcat tgcttctctt gctgctttaa
     6241 ttccaagttg tatgaaacgg tcaatttttt ttacttcttt gccatcaaca acctctaatg
     6301 gatcaaaatt tttaacttca gctgcaattt gaacaggaaa gtccgtagca tcaaaaagag
     6361 taattttatt tactccgctt tctccattgc aaattgcttt aaatgaactt tctttatcta
     6421 aaccaagggc attgatcata ccaatacctg taactacaac tcttttcaag aataagctcc
     6481 ttgcaagaaa aaaaattatt tttttagatt gtcaatataa tttacaacat cttcaatttt
     6541 aattaatttt tcagcatcac tatctggaat ttctacttca aatttttctt ctaaagccat
     6601 aataagctct acaacatcta aagaatcagc acctaaatct tcaataattt ttgattccat
     6661 tttaactgca tctgcatcaa tacttaattg ctctactact actgctttta catcatcaaa
     6721 tgttgccatt tgttctcctt taaaaaatta aaataaagcg tattttacta taaaaagctt
     6781 aaaatattta tagtttttca ttatacttga aaataaaata ttaaaacata aaggaaaaat
     6841 gatgcttttc tctaatttaa tcaaagaaaa tcaaaaaatt tggaatgctt atctacatca
     6901 tgattttgtt aaaaaattgg aagataaaag cctaaagcaa gaaaattttc ttttttatct
     6961 caagcaagat tatatttatt tgcttaatta cgcaaaatgt tatgcaagat tagcacttaa
     7021 ctcaaatact gcaaaagaac ttcgttttgc tatgaaattt caaaattata tagttgaagg
     7081 agaaatggaa cttcatcgtg caattttatc tcttggcatt aatgcagatg aactcgatat
     7141 aaaagatgaa agtttagtca atatagccta ttcgcgttat atgttaagcg taggtgaaaa
     7201 tggagatttt ttagatatgt tagttgctct tagtgcttgc gctataggct atgcaaaaat
     7261 aggtgctgaa attataaatc gtttaaaaaa tgaaaattta aaagatcatc cttacaagga
     7321 atggattttg acctatggaa gtgaaaattt tcaaaatgaa gctaaagaat ttgaagattt
     7381 tgttaattct tatacttcaa gtgttagtgc acaaaaattc caaaaactca gcgaaatttt
     7441 tcatactgta acacgcttgg aagtggcttt ttgggagcat tctttaagaa tggaattaaa
     7501 tctttaaaca tgggcttttt gcccatgttt ttatgcaatt ttacttacat caataatatt
     7561 ataatctaaa ccaaccgttt ctttagaaag tcctaatgca agtcctacta attgcgataa
     7621 atgaataata ggcaatcttg ctttagaatt agtataatct tgaaatcttt cttgatagat
     7681 atcaagctgc atttgacaaa gtggacaagg tgttacaaca caatcagctt gattttcact
     7741 tgcattattg acaatttgac tagacatttt tttcacagat ttttctgcag gataagaagc
     7801 atgaaaacca caacaatcaa ggcgtttttc aaaaggaact attttagccc ctaaaacttc
     7861 tactacactt tcaaaacttt ttggattggt tgaactttct tttttaccga aaatatcttc
     7921 aggtcttaaa ctatggcaac cataaaataa agctactttt aaatttgaaa gcggcttttt
     7981 caccttgctt tttaaattat ccaaatcctc ataaagctcc cacaaaagac ttgtaatagg
     8041 cgttgaacct tgatatttca ttccaccttt tgctaaaaaa gtattgatgc gttcttttgc
     8101 acccttatca agagtatttt ttgctttagt taaagttagc atacaagtac tacaagttgt
     8161 aagcattggc attttcatct cttctgctaa agcaatattt cttgcattag ctaccaaagt
     8221 cgcaatagga tcaacacact gcgcttgaga agccccacaa caactccacc ccttaatttc
     8281 attcaacttc caacccaaaa taggtgcaat agcttcaagt gaaattttag attcttttgc
     8341 agcttgagat aaaacacaac ctggaaaaaa agcgtattct ttttgcatat tttactcctt
     8401 aacagcagct tcttgtgccg cctttatcat tttaaccaaa tctttatgcc cttctatttc
     8461 atcctcgcca aaaacatgca taggattcat ttttcctgca cgcataagtt taaaagctat
     8521 atctgtttta cccatagaac ctatagcacc ctcagaacgc aaagcaagat aaatttcatt
     8581 caagcgtcct gaaccttcaa ctaaatcttt ataaaaagct tcagcatgat caggccctaa
     8641 gccttcattt aaaccttttt taatcgccat cactcttaaa tttgctatat cacttactga
     8701 acttataccc tttggacaac gatcagcgca ctcttgacaa tgaacacaaa gccaaagtcc
     8761 attcattacg ctgggtttta catgcaacat aggatcctta cctcgagagt ctgccgctgc
     8821 acgccaagca tgagtaaaaa caaaaggttg catataatcg ctactatctg cttctaattt
     8881 attacactct gaagcacagc taccacataa aatacaatcc cattgcttgc taatacgatc
     8941 aaattcttct tgactttgtt tacagccctt ttccgctgaa aattcatttt ttgccaccat
     9001 ggcaggacga atttttctta aattttctat agaaggttcc caatccacaa ttaaatcaga
     9061 aattactcta aaatttccaa gcggagaaat gcgtatactt gaaggattat catattcttt
     9121 taacaaatct tgcattttag tatcacaagc aagataagaa tgcccattca cacgaactgc
     9181 acaagcccca caaattgcag attgacaaga ggcggtaaaa tttaaagtaa tatcttttgt
     9241 ttttttgata aaaagcaaaa gagagagcag agtttttcct tgtatatcct tatcatcaat
     9301 atcataactt tgttcatatt tttccttgcc attaaaacga tctatgataa ttttcattgt
     9361 actctccttc catcaagtga aaactcagtt accacgacat ctttataact aagttttaat
     9421 tcatcatttt ctaaatttac aatgctatgt tttaagaaat ttttatcatc tcgctttgga
     9481 taatcttctc tagtatgagc cccacggctt tcaagtctat ttctagctgc taaacaagca
     9541 cagcgagaaa gtaaaatcaa attaccaagc tctacataat ctgtaaaagc agtattcatc
     9601 acttcattag gatttggaat acgaattttt tcatatcttg cttgtatatc ttctaatttt
     9661 tttgctagaa gatcgagttt ttcttgagtt ctaaaaatcc ccatattatc ccaattttga
     9721 cttcctagct cttctcgcaa ttcatacatt tcttgaccat ttccgccatt atttgtaatt
     9781 tctttaaatc taacctgcca tttttgagca agttcatgag tttttgcccc tttttcaaaa
     9841 cttgcatctt tagcataatt tgtcgcacca atgcctgcta aatgccctgt tacaactgca
     9901 tcggctaaag aatttccccc tagtctatta gctccatgta tagaaatgca agaagcttct
     9961 ccacctacat aaattccagc aattttagta ctcatatctt caaatttagc cacttcaatt
    10021 ccacccatag aataatgcgc cgttggacgg ataggtacag gagtatctac taaatcaata
    10081 ttttcaaaaa gcattgcagt gtgacgaatt tttggtaaat cttttaaaat tttttctttt
    10141 cctaagtggc gtacatcgca caaaacataa gctccaagtc cctcgccata acctctacct
    10201 tcacgaattt ctgtttctat agcacgcgca accacatctc gcggtgcaag ctccattttt
    10261 tcatggtaat ttttcataaa acgctcacca cgattattta aaagatatcc cccttcaccg
    10321 cgcgccgctt ctgtaataag agttccacca tttgcaactc ctgttgggtg aaattgtatc
    10381 atctcaggat cttcaaaacc aagtcctgct ctaagagcag ctgccacacc atctcctgtg
    10441 gcaataaaag gagttgaagt tctattataa aatatccttg tgtatccccc tgtagcaatc
    10501 accaaagctt tgcataacac aggataaatt ccaccgcttt gtatatctct taaaacgaca
    10561 ccctcgcatt ttccatccac aacacctata tccaaaagtt catgatccat taaaaatttc
    10621 acaccactac taatagcatc atctaaacaa gaatgcatta aaatatgacc tgttttatct
    10681 gcagaatagt tacagcgttt cttagaagct cctcccatta aacgctgagc tactccacct
    10741 tgctcatttc ttgaaaacaa ggttcctata aaatccatat taaaaatagc ctttccagct
    10801 aattcgcaaa attttaaagc cgcgtcttga tctaccaaat aagctccgcc tttaatagta
    10861 tcataagcat gtaatttata ggaatctcca ttagaaaaat cagtaactcc attaattcca
    10921 ccctctgcca tacaagttgc gttacgcgat ggcatcatct ttgtagctac tacaacgctt
    10981 aattttggat tttcttttct cactgcggct gcagcacgca aacctgctcc acctgatcca
    11041 attaccaaaa catcgcaaga aggtaaattt atatctttat ccatcttaga tgaatcatct
    11101 aaagcataaa ctccacttga acttgcagct aaagctccta cactaataca ggctgttttt
    11161 ataaaatctc ttctagaaaa ttcacccata tcattctcct tatttaaaaa aattaataat
    11221 aatttttaat gtaagtcaat cttacataac cgcatgccaa aaatccaaaa acaaactctc
    11281 ctttcaatat aaaatggatt aaaaacaaat ttataattta ataaatataa aaaagcataa
    11341 gataagtaat caaagaagat agatgaatat aataaaataa atattaaaaa atttttgcaa
    11401 tatatcataa tctattcctt gcaaattaaa cggaatgatt ataccttaaa
//
LOCUS       DARBBO010000050        11427 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.050, whole genome shotgun sequence.
ACCESSION   DARBBO010000050 DARBBO010000000
VERSION     DARBBO010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11427
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.050"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(14..424)
                     /locus_tag="SB854_001086"
     CDS             complement(14..424)
                     /locus_tag="SB854_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEG0957084.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVGDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFKKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            complement(431..1174)
                     /gene="fabG"
                     /locus_tag="SB854_001087"
     CDS             complement(431..1174)
                     /gene="fabG"
                     /locus_tag="SB854_001087"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HEG0957085.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKTIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSSVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            complement(1246..2724)
                     /locus_tag="SB854_001088"
     CDS             complement(1246..2724)
                     /locus_tag="SB854_001088"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEG0957086.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEIPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVSPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKEYYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAAQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIIECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            2804..3865
                     /locus_tag="SB854_001089"
     CDS             2804..3865
                     /locus_tag="SB854_001089"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEG0957087.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKA
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLFCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLAQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAII
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            3865..5073
                     /locus_tag="SB854_001090"
     CDS             3865..5073
                     /locus_tag="SB854_001090"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEG0957088.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGSFDIYDDHFTETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDIMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELNPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVVILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYELLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALSRYKDKKIHLIIGGDDKGVDLSNLFDFMKGFDIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
     gene            complement(5255..5371)
                     /gene="rrf"
                     /locus_tag="SB854_001091"
     rRNA            complement(5255..5371)
                     /gene="rrf"
                     /locus_tag="SB854_001091"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(5626..8681)
                     /locus_tag="SB854_001092"
     rRNA            complement(5626..8681)
                     /locus_tag="SB854_001092"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(9217..9293)
                     /locus_tag="SB854_001093"
     tRNA            complement(9217..9293)
                     /locus_tag="SB854_001093"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9257..9259),aa:Ile,seq:gat)
     gene            complement(9302..9377)
                     /locus_tag="SB854_001094"
     tRNA            complement(9302..9377)
                     /locus_tag="SB854_001094"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(9342..9344),aa:Ala,seq:tgc)
     gene            complement(9480..10992)
                     /locus_tag="SB854_001095"
     rRNA            complement(9480..10992)
                     /locus_tag="SB854_001095"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
BASE COUNT         3389 a         2429 c         1823 g         3786 t
ORIGIN      
        1 aattatcaaa tcattaagcc ttaaaaagct taaattctcc attcataaat tgcattctag
       61 cgcttaaatg atcaagataa aaaacttcaa attttggatt ttgcggagtt tcataaagat
      121 ttacaagata aggatatttt ttaaacatca tttttttaac ttctaaattt ggttcaaaaa
      181 ccgcattagc tctaagtctt aaaaaagtcc catcttttgc acaagaacaa aattcaatac
      241 cattataatt ttttatatgc ttaaaaagtc cttttgtatt tgctgtgcaa aaataaattt
      301 tatctcccac aagcaatgga ctttgtatag gacgcactct aggatttcca caagttccta
      361 aagtggctaa aaatgctggt gcattatcat ctaaaaattg tgctatttct tttaaatcca
      421 tcatttttcc ttacatatat aaaccaccat tgatcttaag cacatcgcct gtcacataag
      481 aggcataatc actaagtaaa aacgctacac aattagccac ttcttcaggt tctgcaaagc
      541 gttttaaagg gatattgtct tgataggttt gtttgatttc atcacttaaa acttcagtca
      601 tatcgctttt tatgaaacct ggagtcacac agttaaagcg taaatttcta cttgctcctt
      661 ctttagcaaa agatttagtc atagctatca ttccaccctt actagcagaa taatttactt
      721 gtccagcatt gcccatttct ccgacaatag aagcgatatt tacaacagca ccaaaacgtt
      781 ttttactcat ggtttttaaa gcttctctac aacctaaaaa agctgagctt aaatttgtat
      841 ctacaacgct actaaagtcc tctaatttca ttcttaaagc aagtttatca tttgtaacgc
      901 ctgcattatt tacaagataa cttaattctc catcactctc aactatagtt tttacaccgt
      961 tttcaaactc atcttctttg cttgcatcaa atttaatcac agcagcaacg ccaccacttg
     1021 caataatttc atcttttaaa gcatctgcaa gttcaggttt tgaacgataa ttgatccaaa
     1081 ctttaagtcc aaaacccgcc aaagtttttg cgatagaagc acctattccc ttacttgctc
     1141 cagtaattaa aacatttttt ccactaaatt tcattatcta tccttaataa gtttaatttt
     1201 aaaaattgca atcttaacaa atttcttata aaaaaggcaa acaaactaaa ataaagcctc
     1261 attcatttct tttggaattt ctaagtctaa aattttaagc acgcttgcag cgatattgct
     1321 aagccccata ttatctttaa tctttgaaac tccctttgct tgcacaaaaa caaaaacatc
     1381 aaaagtggtg tgattggtaa gcaaatttcc tttttcatct tgcatagcct cgcaatttcc
     1441 atgatcactt gtaatgataa aagcataatc atgctttttt gcacattcta taatctcgcc
     1501 caaacaagta tccaccgctt cgacagcctt tatagcagca ttaaaatcac ctgtatgtcc
     1561 aaccatatct ccatttgcaa aatttaccac tataaaatcc tcaccctttt ctatgccttt
     1621 tttcactgca tcacacactt caaaagcact catttggggt ttttcatcat aagtttttac
     1681 cttggggctt gggattaaaa cccttgtttc attttctaaa agctcttctt ttccgccatt
     1741 aaaaaagaaa gttacatggg cgtatttttc ggtttctgcg gtatgaagct gactaagccc
     1801 tgctttagaa atcacttgcg ctaaagtatt ttcaattttt tctttttcaa aaagcacagg
     1861 gagtttaaat ttatcatcat aaacactcat agtaagtaaa ttttcaaaga ttttttcgcg
     1921 ttcaaactct ttaaaatcct tagaatttaa cacttcaaca agttgtttca ttctatcatt
     1981 tctaaagttg ataaagataa tgccatcttc ttctctcatg cccttgtaat tctcattttg
     2041 agctgctttg ataaactcat cagtaacatt ttcatcgtaa gatttttgta ggtattctaa
     2101 taaatttggc actttataag ccttgcctaa taagcactca taatactctt ttaccctatc
     2161 ccaacgctta tctctatcca tagcataaaa acgcccacaa agcgtagcaa aatgcacgcc
     2221 taagttttca caaaattctt ttaaatcttt tatgaaattt aagccacttt ttggacttac
     2281 atcacgccca tcagtgattg cgtgagcaaa aacttcattg ccatttttcg cacaaatttc
     2341 aagcatggct ttaaaatgcg tatccataga atgcaccccg ccatcactat aaagtcctat
     2401 aatatgcact cttttacatt ttgctaaaag tttttgtaaa ttctcatttt tttcaagttc
     2461 tttgttttca atggctttat taatacgcac taaattttga taaataatac gcccacttcc
     2521 tatacacata tgccctactt cactatttcc catctgccct tctggcaaac ctacagctaa
     2581 accactcgtt tttagtaaag aatttgggat ttccttaaaa agcttttcat aacttggttt
     2641 tttagctgct tcaaaagcat taaacttact attcttatta taccctattc catctgtaat
     2701 aattaaaacg catttttgct tcatttttct ctcttttata agaatttttt tggttagatt
     2761 ttactaaaat taaactttta aaaaccaaaa agaaggctag gttttgtatt atctttcaga
     2821 tttaagtcat tatgcttttt ttacttatat tagtgtgcgt gcaggatttg cattttttat
     2881 cgctttatgt ttgtctttat ttttaatgcc taaatttatt acttgggcaa aagctaaaaa
     2941 tgctagtcaa cctatttacg aatacgcccc agaaactcat aaaaccaaat gccatactcc
     3001 aaccatgggt gggcttattt tcattagttc tgcagtaatc gcaagtttat tttgtatcaa
     3061 atttgataat atttttgcta taagtgcttt actttgtttg atactttttt gtttgatagg
     3121 tctcatagat gatttaggca aagttctaaa aaaagataat cattcaggac ttagtccaag
     3181 aatgaagctt ttagcacaaa tcatcgctgg acttatttgc atcttacctt tatattttag
     3241 ttcagagctt agcacggaac tttttatacc tttttacaaa caccctcttt ttgatatgga
     3301 aatttttgcc attgcttttt ggattttggt tttaatttct agctctaatg ctgtaaattt
     3361 aaccgatgga cttgatggct tagctacagt tccaagtatt ttttctttat ctactttagg
     3421 gatattctta tatttgagcg gaaatttaaa ttatagtgaa tatttacttt tgccaaaaat
     3481 tcaaggactt ggtgaagtag tgattatttg tgctgcatta atcggtgctt taatgggatt
     3541 tttatggtac aactgttatc ctgcgcaggt ttttatgggg gatagcggga gtttagcttt
     3601 aggtggattc ataggatttt tagctatcat tagcaaaaat gaaattttac ttttactgat
     3661 aggttttgtt tttgttcttg aaactgtttc tgtaatttta caagttggaa gttttaaaat
     3721 ttttaataaa agagtattta aaatggcacc tattcatcat cattttgaaa aagttggctg
     3781 ggtagaaaat aaaattatag tgcgtttttg gatgatagcc ttactttcaa atttacttgc
     3841 acttgcatca ataaagctaa gataatgaaa atttcacttt ttggatacgg aaaaaccaca
     3901 cgcgctattg ctgaaaattt ggtagataaa tttgggtctt ttgatatcta tgatgatcat
     3961 tttacagaaa caaaaaaaga tacactagga aatttacttt taaatcctaa tgattttgat
     4021 gataatttaa gcgatattga aattcctagt ccaggttttc caccaaagca caaactcatt
     4081 caaaaagcaa aaaatttaca aagcgaatat gacttttttt atgatatcat gccaaaatcc
     4141 gtttggataa gcggaaccaa tggcaaaacc accaccacac aaatggctac acatttatta
     4201 tcacacattg gtgctgttat gggtggaaat gttggaactc ctttagcaga gcttaatcct
     4261 tatgcaaaac tttggatact tgaaacttca tcttttaccc tacactacac tcataaagct
     4321 aaacctgaaa tttatgcact tttacctata agtcctgatc atctttcttg gcatggaagt
     4381 tttgataatt atgttcaaga taagctaagc gttttaaaaa gaatgaatga atgtgatgta
     4441 gtaatactgc ctaaaattta tgcaaatact ccaacaaaag ctcataaaat aagctatgaa
     4501 gatgaaaaag atctagctgt taaatttggc attgatacgg aaaaaatttc ctttaaaagt
     4561 ccttttttac tcgatgctat catggcttta gctatagaaa aaattctact tgatacttta
     4621 agctatgagc ttttaaatag ctttgtaatg gaaaaaaata aactcgaaga gcttaaagac
     4681 agtcaaaata ggctttgggt aaatgacact aaagctacaa atgaaagtgc tgtaatggct
     4741 gcacttagtc gctataaaga taaaaaaatc catcttatca tagggggaga tgataagggt
     4801 gtagatctta gcaatttatt tgattttatg aaaggatttg atatagaact ctatgctata
     4861 ggtattagta ctgaaaaaat gcttgattat gcaaaaaaag cgaatttgaa agcctataaa
     4921 tgtgaagttt tatctaaggc tgtaaatgaa atttcaaatc acttaagagt caatgaagtg
     4981 gctcttttaa gtcctgcttg tgcaagttta gatcagttca actcttacgc agaacgtgga
     5041 aaagtcttta aagaatgtgt gaataaaatt taatttattt tacaatccat acaaatatat
     5101 taaactttcc aaacccctaa aaacacccta ttctctctaa aaaccctaac cagcaacaaa
     5161 ctctttttta aacacgattc taagcaccat ctaaaacaac aataaaaata aacataggat
     5221 ttatatataa agtaagtaat gaagacattt aacaagtccg caatgagcta ctttccccct
     5281 gccagtaagg cgtagtatca tcacccacga tgtgcttagc ttcttggttc gggatggagc
     5341 aaggcgtttc cacatctgta taatcacgga cattgttatt taaatattct ttgaaaaatt
     5401 gaatttaaga ataaaactta atcttttatt tctttacttt tttctttatt ctctttcttc
     5461 ttttcttatc ttttatcttt gataagtttt tatatagaat acttaaaaaa caatgttaag
     5521 agcaagttct aatacaaact ctacttgaaa gatttctatt aaactctaaa tattatctat
     5581 attcaaagtc ttctaaaaac cttaacaagg aagtgatgct ttattaaaga taagccaaac
     5641 gctctattag tactggtcag ctaaaggact ttcatccatt acacacccag cctatcaaac
     5701 tagtagtctt ctagagagct tagagaagat tcatcttaga gttggcttca cgcttagatg
     5761 ctttcagcgt ttatcctttc caaacttagc tacgctgcga tgctcttggc agaacaacag
     5821 ctacaccagt ggtttgttca acccggtcct ctcgtactag ggtcaaatct cttcaatctt
     5881 cttacgccca cggcagatag ggaccgaact gtctcacgac gttctgaacc cagctcgcgt
     5941 accgctttaa atggcgaaca gccataccct tgggacctgc tccagcccca ggatgcgatg
     6001 agccgacatc gaggtgccaa acctccccgt cgatgtgagc tcttggggga gatcagcctg
     6061 ttatccccgg ggtacctttt atcctttgag cgatggccct tccacacaga accaccggat
     6121 cactaagacc gactttcgtc tctgcttgac ttgtatgtct tgcagttaag ctggcttata
     6181 cctttatact ctacgaacga tttccaaccg ttctgagcca acctttgtaa gcctccgtta
     6241 ttatttggga ggcgaccgcc ccagtcaaac tacccaccag acattgtccc acttgaggat
     6301 aactcaagct ggttagctac ccaaataaga aagagtggta tctcaacaat ggctcatata
     6361 caactggcgt catatactca aagcctccca cctatcctgc acattcttat ccaagtagca
     6421 gtgtcaagct gtagtaaagg tccacggggt ctttccgtct tgccgcgggt aggaggaatt
     6481 ttcacctcca ctacaatttc actggatccc tctttgagac agctcccatc tcgttacgcc
     6541 attcatgcag gtcggtattt aaccgacaag gaatttcgct accttaggac cgttatagtt
     6601 acggccgccg tttactcggg cttcgatcaa gagcttcgct aatgctaacc ccatcaatta
     6661 accttcgagc accgggcagg cgtcacaccc tatacatcct cttacgagtt agcagagtgc
     6721 tgtgtttttg gtaaacagtc gggagggact ctttgttgta agtttccttg ctttcggagt
     6781 aaatcctaat acaaagctaa ccacacctta taccgaagat acggtgctat tttgcagagt
     6841 tccttaaaga gagttcttcc acgcgcctta gaatactcat cccacccacc tgtgtcggtt
     6901 tacggtacgg gcaacattag ctaaacttag aaacttttct tggctcgacg gcatcagggg
     6961 ttcttctatc catccgaaga cttcaaaaag cctttcagtt ctcggagtat tgttatacgg
     7021 atttgcctgt ataacctcct acgaccttag actagcactt ccatccgcta gcccccttag
     7081 ccctaagcgt ccttccatcg cacactaatg ttggtattgg aatattaacc aatttgccat
     7141 cgtctacccc tttcggactc gacttaggac ccgactaacc ctacgatgac gagcatcgcg
     7201 taggaaacct tgggtttacg gcgttaatga ttctcacatt aattatcgct actcatgcct
     7261 gcatgctcac ttctattcgc tccagcactc cttaccggta taccttcgac gcaaatagaa
     7321 cgctctccta ccacttgcac acaacttaaa ctacttaact ttagtctaag aatattttta
     7381 ctgattttac taagttttat ttctatcttt actctataaa aatcagtaaa aatataacta
     7441 aacatataac ttagtttctc atattctaaa cttaaataat ctaagttgtg tgcaagtcta
     7501 cagcttcggt acttacttta gccccgttat attttccgcg caaaatcact agaccagtga
     7561 gctattacgc tttctttaaa ggatggctgc ttctaagcca acctcctggt tgtttaagta
     7621 acttcacatc gttttccact taagtaagat ttagggacct tagctggtag tctgggttgt
     7681 ttccctcttg acgacggatt ttatcactcg ccgcctgact gctgtgatta catataaggt
     7741 attcggagtt tgatagggtt tggtacattg gtgtatgccc tagcccattc agtgctctac
     7801 ccccttatat tacgacacaa cgctatacct aaatatattt cggagagaac cagctatcac
     7861 gaagtttgat tggcctttca cccctatcca caagtcatcc cggggctttt caacgcctat
     7921 gggttcagtc ctccactagt tcttacacta gcttcaactt gctcatggat agatcacttc
     7981 gtttcgggtc tgcagcatct gactaagcgc cctattcaga ctcgctttcg ctacggcttc
     8041 gcgtttgctt aaccttgcca gacaccacaa ctcgcaggct cattatgcaa aaggcagtcc
     8101 atcaccctgt attgctacat agggctctga atgattgtaa gcaaatggtt tcaggttcta
     8161 tttcactctg atcacctcag ttcttttcac ctttccctca cggtacttgt gcactatcga
     8221 tctggtatta gtatttaggg ttggatcgtg gtcgacccgg attcagacag gattcctcgt
     8281 gtcccgccct actcaggata ctgctagcta aggtttgttt ttcgcatacg ggactatcac
     8341 cctctatggt tatactttcc agaatgttct gctaaactta cctcttgcac attgcagtcc
     8401 tacaaccccc agtgcaagca ctgggtttgc cctcttgcgc tttcgctcgc cgctactgac
     8461 gcaatctcta ttgatttctt ttcctgaggg tactaagatg tttcaattcc cctcgttcgc
     8521 tcctatatag gtaatgtata tctctataca ttgggttgcc ccattcggaa atctacggat
     8581 caaagcttct tgacagctcc ccgtagctta tcgcagtcta gtacgtcctt catcgccttt
     8641 accagtcaag gcatccacca ttcgctctta gtagcttacc ttttttacct tttattattg
     8701 attctaaaac gcatcacttc cttgttaaag tttttatgat aagacttctt tatcttaaga
     8761 cggaaagcat tcaaacactt aatataaaac taaatgattt agtctcaact aagctgtgag
     8821 tttgaaactt gtctttaatt tataatcctt aaatccaata ttctctttat tcatagaaat
     8881 aaagacagct aaaagttaag ttaaactaaa gaaaagataa ataggtttta tcctttaaca
     8941 agtcctgtaa aattgttttt attaaaactt gcttgtgact cttaacaatg ataattaaaa
     9001 agaacattta ggtttaaaac ctaaaggaag tatatatatt aacataatca ttataaatat
     9061 aaatgcataa tgtatatgct acttatatct attaaagtat attcttttat agttaaagat
     9121 aaaaaataaa tctaagtata gagtttatat tttatattta atctatttta tatacttgct
     9181 ttagatttta aagcttcttt attcaaatct tttttatggt gggcctaaca agacttgaac
     9241 ttgtgacctc acccttatca ggggtgcact ctaaccagct gagctatagg cccttaataa
     9301 atggtggaga atagcgggat cgaaccgctg acctcctgcg tgcaaagcag gcgctctccc
     9361 agctgagcta attccccata aacaattagc tttatcatca atctttgaaa tctaaacaag
     9421 aatcaattga gtttatatat tgaagtaata gttgtgagac ttattacttt gtactctaga
     9481 aaggaggtga tccaaccgca ggttctccta cggttacctt gttacgactt caccccagtc
     9541 gctgattcca ctgtggacgg taactagttt agtattccgg cttcgagtga aatcaactcc
     9601 catggtgtga cgggcggtga gtacaagacc cgggaacgta ttcaccgtag catggctgat
     9661 ctacgattac tagcgattcc ggcttcatgc tctcgagttg cagagaacaa tccgaactgg
     9721 gacatatttt atagatttgc tccacctcgc ggtattgcgt ctcattgtat atgccattgt
     9781 agcacgtgtg tcgccctggg cataagggcc atgatgactt gacgtcgtcc acaccttcct
     9841 cctccttacg aaggcagtct atttagagtg ctcggccgaa ccgttagcaa ctaaatacgt
     9901 gggttgcgct cgttgcggga cttaacccaa catctcacga cacgagctga cgacagccgt
     9961 gcagcacctg tctctaagtt ctagcaagct agcaccctct tatctctaaa aggttcttag
    10021 gatatcaagc ccaggtaagg ttcttcgcgt atcttcgaat taaaccacat gctccaccgc
    10081 ttgtgcgggt ccccgtctat tcctttgagt tttaatcttg cgaccgtact ccccaggcgg
    10141 tacacttaat gcgttagctg cattactgag atgactagca ccccaacaac tagtgtacat
    10201 cgtttagggc gtggactacc agggtatcta atcctgtttg ctccccacgc tttcgcgcct
    10261 tagcgtcagt tgagttccag cagatcgcct tcgcaatggg tattcttggt gatatctacg
    10321 gattttaccc ctacaccacc aattccatct gcctctccct cactctagac tatcagtttc
    10381 ccaagcagtt taatggttaa gccattagat ttcacaagag acttgataat ccgcctacgc
    10441 gccctttacg cccagtgatt ccgagtaacg cttgcaccct ccgtattacc gcggctgctg
    10501 gcacggagtt agccggtgct tattccttag gtaccgtcag aattcttccc taagaaaagg
    10561 agtttacgct ccgaaaagtg tcatcctcca cgcggcgttg ctgcgtcagg gtttccccca
    10621 ttgcgcaata ttccctactg ctgcctcccg taggagtctg gaccgtgtct cagttccagt
    10681 gtgactgatc atcctctcag accagttaag cgtcatagcc ttggtaagcc attaccttac
    10741 caactagctg atactatata gtctcatcct acaccgaaaa actttcccta ctcaacttgt
    10801 gttaagcagg agtatagagt attagcagtc gtttccaact gttgtcctct tgtgtagggc
    10861 agattaacta taccttactc acccgtgcgc cactaatcca cttctagcaa gctagaagct
    10921 tcatcgttcg acttgcatgt attaggcacg ccgccagcgt tcactctgag ccaggatcaa
    10981 actctccata aaaaattata gatagtttaa tctttttctt caaagaaaaa gttatgaaag
    11041 attaaaagaa aagtttttaa tctttttaat tattagattg aatagatttt acataattgc
    11101 ttatgcctaa atctgttctg gctcaatcga tcacttattt agatttcaaa gattgactaa
    11161 taagatttga ataacaatac taatttaaaa gaacaaaaca aaaaatcatt tttaaaagaa
    11221 aagtttttaa attaaaaaac aagatttata aaaaagcttt tagtttataa gacaaaaacc
    11281 aaaagagtta atttataaaa tctactaagc tagtgaaact ttataattta aaagatttta
    11341 agtccttttt tcaaaaaagg aaatgaaagt ataaccaatt aaacttaaaa ggggattaaa
    11401 caaaggatta aatagtataa atatttg
//
LOCUS       DARBBO010000051        11080 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.051, whole genome shotgun sequence.
ACCESSION   DARBBO010000051 DARBBO010000000
VERSION     DARBBO010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11080
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.051"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..302)
                     /locus_tag="SB854_001096"
     CDS             complement(<1..302)
                     /locus_tag="SB854_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEG0957089.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGN"
     gene            complement(299..1417)
                     /gene="carA"
                     /locus_tag="SB854_001097"
     CDS             complement(299..1417)
                     /gene="carA"
                     /locus_tag="SB854_001097"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEG0957090.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            complement(1417..1968)
                     /locus_tag="SB854_001098"
     CDS             complement(1417..1968)
                     /locus_tag="SB854_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HEG0957091.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            complement(2061..2579)
                     /locus_tag="SB854_001099"
     CDS             complement(2061..2579)
                     /locus_tag="SB854_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HEG0957092.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEKQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            complement(2572..3000)
                     /locus_tag="SB854_001100"
     CDS             complement(2572..3000)
                     /locus_tag="SB854_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FliJ family protein"
                     /protein_id="HEG0957093.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAKEKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            complement(2997..4247)
                     /locus_tag="SB854_001101"
     CDS             complement(2997..4247)
                     /locus_tag="SB854_001101"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HEG0957094.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            complement(4275..4372)
                     /locus_tag="SB854_001102"
     tRNA            complement(4275..4372)
                     /locus_tag="SB854_001102"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4336..4338),aa:Sec,seq:tca)
     gene            4512..5720
                     /gene="yedE"
                     /locus_tag="SB854_001103"
     CDS             4512..5720
                     /gene="yedE"
                     /locus_tag="SB854_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HEG0957095.1"
                     /translation="MNSFKQKYLINFWDNSRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFIIV
                     GIANIIGTMILALSYNFLPKAFKEGIKINLLTEFGNLNGFFINLILFILMFVFVVFYK
                     KHFFKNQLKG"
     gene            5724..5951
                     /gene="yedF"
                     /locus_tag="SB854_001104"
     CDS             5724..5951
                     /gene="yedF"
                     /locus_tag="SB854_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG0957096.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDAKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(5967..7436)
                     /gene="putP"
                     /locus_tag="SB854_001105"
     CDS             complement(5967..7436)
                     /gene="putP"
                     /locus_tag="SB854_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HEG0957097.1"
                     /translation="MEVVQINTPIAVMFVVYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGIVSIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHIVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLVASVVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(7454..10942)
                     /locus_tag="SB854_001106"
     CDS             complement(7454..10942)
                     /locus_tag="SB854_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HEG0957098.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYITYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYAYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYEGKKFSNESDTDFILAQNRVWAKEIKTKYENLKDYDVYPVIG
                     ELDFKAKNLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVT
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGI
                     PKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLEDNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFINNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSMIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
BASE COUNT         3687 a         2051 c         1370 g         3972 t
ORIGIN      
        1 atattgcctc taaaaataag agcaaaaccc aaaatcatca taaatatacc aagaataaaa
       61 aatgacaaac tttgaacctt agcattgatt gccaagatat tcccaaaagt cccaaaaatt
      121 atccctaaaa caatataagc aaaaattcta aacaaattat aaataaaagt taataaaaat
      181 aaattattgc tttttgaatt caaatttata aaaagtaaat taaaaccacc acacatagaa
      241 tagcagtgtc caaaactaga taaaaaagca acgctgataa tagctaaaaa atctatactc
      301 acatcaaatt cataaattct ttaaaaatat acttactttc atgaggacct gaagaacttt
      361 ctggatgatg ttgcactgaa ataataggat agtctttata tcttactcct tcaacattat
      421 cgccaaataa atttctatga gtgatatgag ccacttgagc taattcttct ggaacattat
      481 aattatgatt ttgtgcggta atttctaccg tttttgtatc aagattgatc acaggatgat
      541 ttgctccatg ttgtccaaat ttcattttat aagtttcata tccaaaagca ttacttaaaa
      601 gctggtgacc taagcaaatt ccaagcatag gaattttagc ttctgcaagt tttttaatct
      661 ctgcaatctc ttgttttaaa atccttggct cacctggacc attagaaaga aacacgcctt
      721 gaatttcacc ttttttatac agagtaatca actcatctgc tttaacatta tatggataaa
      781 cttctacttc aaaacctact tctacaagtt catttaagat atttgtttta acaccataat
      841 ctataacagc aacttttttc tcacttcttt tagcatcatt aaatttttga aaactagcgt
      901 tccaaacgcc ttgtttatga gaataatttt tcttagtgct aacttctttt acaaaattta
      961 cttcatcaat ttttgctgat ttttctaagg cgatttttaa atcttcttta tttgaaattt
     1021 cagttgaaat tacagctctt aaattgccat tatttcttat catttttact agatatctcg
     1081 tatcaagttc ataaattcct atttttccat gtttttcaag ataatcttgc agactttctt
     1141 tagcgcgaaa atttgaaaaa ctggaactta attcacgcat taaaacacca cttgcaaaaa
     1201 tttccttact ttcattatca ttttcattgg ttcccactat accaatttct ggcatggaaa
     1261 atacgataaa ttgccctgca taagaaggat ctgaaataat ttcttgatac cctgttaaag
     1321 aagtgttaaa tacaagctct ccaaaaaaag taccgctctt tccaaaagcc ttagcactta
     1381 aaaaaatatc attttctaaa taaatataag ccttcattaa aacatacctt tttttctgag
     1441 ctcttcttga tagagttttt caaagataag atcatattct tcgctacctg gaataggttt
     1501 tgttttataa ttgctaattt tctcataaac ctcatcttca agtttttcat aaattttaag
     1561 ataagactct atgcttgaaa agattaaatt tttaactcta ttttcactca ctataaaatt
     1621 aatataatca ttctctacaa gttcttctaa aatttgatgc gctagatgat tatgtctatc
     1681 ttcagaatct aaaatcacat taaattcagg agctaacttt ttcttcacaa gccaaaacat
     1741 atttttacga tctacttgca taagctccat ttcatcttct tgttgctcta aaagctcttt
     1801 tactctttca tctaattttc tttcatttag aatatctttc tctaaaactt ctattataca
     1861 taccttaagc ttttctaatt gatctttaat ttctacaaaa gaagaattag ctatatctaa
     1921 catcatttta tttgcgatat aaggaatatg tggtaatttt atacgcatct taaaaacctt
     1981 ttatttgata atgtttgaaa taatagctta tttttggtaa aagaatgtta aaaatgaaaa
     2041 attttcatta ttttaatcac ctaattacta gcattattat ctaaattttt caaaagcaaa
     2101 gtaagctcgc tagctttttt tggatccatt ttagataaaa cacctgaaat tttacgcgat
     2161 tccaaagaaa gcattatttt gcttgcatcc tctgcatcca tttgacttaa aacatctgca
     2221 atggctgcat ctttcatttg ggaataaatt tctttaaccc taccttgagt tttatcattg
     2281 attgaattta aaatcttttg ttgtttttct acaagccttg cattttcaag ctttaattct
     2341 tcaatttttg ccaaagttgc attaacctca gcctcttttt tttctaaatt ttcaagcctt
     2401 tctttttgca aagcttcaaa agaggcttta taagcttcta aagattgtct tgcttcatca
     2461 aattctctag tttgcaattc aatttgagct tttctagctt caaaatactg ctcacaatct
     2521 tgttcagctc caaaaactac acttgaaata aaaactaaca atataaattt tttaatcatc
     2581 tttttctcct ttgaaaaaac gactgattgc aatttcatct aaaaattttt cttcagcctt
     2641 ggcaagttct ttttgctttt gtttaatttc ctcggcttct aaaaccttca ttttttcata
     2701 atctaaatgt gctttttgat ataaaaactg ataatgattc atttcttttt tagaaagttc
     2761 tactttctcc ttagctcttg ccaaagcctc gcgtcctact tgtgccatac ttaaattcga
     2821 tcttaactct gctatagatc ctgattttgg caatacgcct aaactttcac actcttggcg
     2881 tgaaagttca taagcttttt catgttcaag ctgtctttgt ttggcttgat taagatttga
     2941 ttctgcttta tcaagttgtt gttttcttac ctttacaaca gaattatatt tacttttcat
     3001 aagatgatag tatcatctct ttcagggcta gtagaaatat actttacctt aacccctgca
     3061 agctcttcaa gtcttgctat atatttttta gcattttctg gcaataaatc ataatctttt
     3121 ataccaaaaa ctttatccca accatccatt tcttcataaa taggttgaac attttctaaa
     3181 tcacttggta tatagtcgat ttccataccc ttatattcat aagcacgaca aatttttatc
     3241 ttttcaaaac catctaaaac atcaagcttc atcaaagata aagcatcaag accattaagc
     3301 cttgctgtat atcttacagc aaccgcatca aaccatccac agcgtctttt gcgtcccgtg
     3361 cttacgccaa tctcttttcc aatttgcgca attttttctc catcttcgcc cttatcctca
     3421 gtaggaaaag ctccatttcc cacacgcgtt gcataagctt ttacaatacc tataatattt
     3481 cccgcttctt taggatttaa cccaagtcct gttaaagcgc ctgctgaaat agtacttgaa
     3541 cttgtaacat aaggataagt tccatgatca atatcaagca tagaaccctg agctccttct
     3601 aaaagtactc ttttatcttc atctaaagcc ttccaaagca ttcttgtagt atctgtaata
     3661 taaggagtta aaatttcatt aaaacgtttt aaatcagcaa gcaattcttc agcacttgga
     3721 atttcaattt caagcatttc aaaaaaagtt ttattagctt caaaatcttt tatcaaagcc
     3781 tcgcaaagtc tttgtggttc taaaagctct ccaactctat gtcctgtacg attaatctta
     3841 tctgcataag aaggtcctat acccttacct gttgttccta tggcattttt gcctttgagc
     3901 ttttcttttg caatgtctat taaagaatga tgttttaaat ttaaatgagc tctatcgctg
     3961 atatataatc taccttttaa attttcaaat tgagccattt cagcaatcaa tacttcagga
     4021 gaaaccacaa ctccatttcc gataatatta atacatcttg gatgcaaaac tccacttggc
     4081 ataagatgaa gcgcatatct tacaccattt acccaaatcg tatgtcctgc attgtgtcca
     4141 cctgcacttc tgcaaacaaa atcataattt tcacataatt tatcaactac cttacctttt
     4201 ccttcatcgc cccattgaat gccgacaata atatctgctt tgctcataaa aatttccttg
     4261 attttactta atattggcga gaagatgaga gaatcgaact ccccaaagaa tagtcaacta
     4321 tcctttcatc tgatttgaag tcagtggcga tcaccagata cgctaatctt ccaaagtgat
     4381 aattatagcg atttttaatg aaaaacaaaa taaatttatc aatattcttt ttgacttcat
     4441 attaaattta agctataatc tcactctttt ttagcatcaa gttttgatga ttacattttt
     4501 aggatctttc tttgaattct tttaaacaaa aatatttaat caatttttgg gacaattccc
     4561 gttctatgat tgcacttgga attttaagtg cagtgtattt tgggattttt ggtggcgttt
     4621 gggctgttac tggagaaatg acacgttggg gtggcgagtt tttagagctt ttaggtatga
     4681 atttagatgg atattcttat taccaaaagc aaaatttaaa tggaacccct ttaacaagaa
     4741 ctgatggtat tatgctcata ggtatgttta taggttgttt agtagccgca cttttagcta
     4801 acaaagtcaa atttcgtcta cctgctagca atataagaat ttttcaagca atagtaggtg
     4861 gaattctttc aggatatgga gcaagacttg catttggatg caatttagct aattttttta
     4921 caggtttacc ttatttttct ttacacactt ggctttttac tgtttttatg gttttaggaa
     4981 tttatctagg agtgaaaatt tgcaacactt ccttttttaa acctaaagct aaattagaac
     5041 gtgtaaataa agaaaacttg ccgttaaaca agcaaagttt gcgtacaaaa ttatatttta
     5101 acttaggcat attgcttttc atagcctttt tagtttgggt gttttatctt gtttttacaa
     5161 atggcaatat cagcacacaa aacaaacaaa gtcttctagc tttagcactg atttttggtt
     5221 ttgtttttgg ctttgttatt tctagagggc aaatttgttt tacttcttgc tttagagatt
     5281 tatttttatt tggtagagat aatgctataa aaggcgcatt aatcggtatg attatcgcct
     5341 ctttaatcgc ttttgctttt atcttgcaag gtcatactag caaactcata gaactttctc
     5401 ctgctgtagc tgtgggagca tttttgtttg gttttggtat agtttttgcc ggaggttgcg
     5461 agtgtggttg gacttatcgt gcctttgaag gacaaagtca ttttataata gtaggaattg
     5521 caaatataat aggaactatg attttagctt taagttataa ctttttacca aaagctttta
     5581 aagaaggtat aaaaatcaat cttttaactg aatttggcaa tttaaatgga ttttttatca
     5641 accttatttt attcatctta atgtttgttt ttgtagtatt ttacaaaaaa cactttttta
     5701 aaaatcaact taaaggataa acagtgaaaa ttacttatag tttaaattta caaggtgaag
     5761 cttgtcctta tcctgctata gcaacacttg atgtcttacc taagcttaaa agtggagaaa
     5821 ttttagaagt actttgtgat tgtccacaaa gtatcaattc catacctcaa gatgcaaaaa
     5881 accgtggttt taaagtgctt gaaatcgatc aaagtggacc cacactaaga tttttaatcc
     5941 aaaagcctta aaaaaggctt ttattctcaa agctctttta acatcttttc ataagctgcc
     6001 ttagttccag atcttacatt tgtaaacaaa cttgcaataa taatcaccac cgaagctact
     6061 aaaaaccctg gaactatttc ataaagacct gaatttgcaa aattcttcca aagcaccaca
     6121 gtagcagctc ctgttatcat acctaagatc gctcctactc ttgtcatcct actccaaaat
     6181 aaagaaaaaa gcattacaga accaaaagaa gctccaaatc cagcccatgc ataagaaact
     6241 atactcaaaa cacttgagtt tttatcagta gaaatcaaaa acgctattac agctaccaat
     6301 aaaacaccta atttacctaa atttaataca atatgacttg gtgcatcttc tctaaaaatc
     6361 tttttataaa aatcttccgc tatagtagaa cttgaaacca gcaattgtga acttgccgta
     6421 ctcataatag ccgctaaaat agcactgagt aaaatacctg ctatccaagg attaaataaa
     6481 agctgcgaca tcacgatgaa aatcttttca ggatcttgca aacttaattc aaatttatgc
     6541 acataagcta tacctaaaat acctatcata caagcactta aaagacaaac cgccatccaa
     6601 gcaataccta taaaagtggc cataggaata tctttagtag aacgaatcga cataaaacgc
     6661 actaaaatat gtggttgacc aaaataaccc aaaccccaag caagtgcaga tataatgctt
     6721 acaattccta ctccttcgcc catagataaa gcttgtggct ttatttctct tactatattc
     6781 atcgcttcac caaaaccacc taaatgataa agcataacca aaggtacaat aattaaagcc
     6841 atcatcatta aaagcccttg tatcatatcc gtccaacaaa ccgccttata tccacctaaa
     6901 aaagtataag caacaataat aatcgttcca gtagttaaag cataatcgta tctgatacca
     6961 aaagtacttt caaaaagttt tgctccgctt acaagccctg atgaaacata aaaggtaaaa
     7021 aatatcaaaa ttaccaccgc acatacaatg cgcagtatat gtttatcatc atcaaaacga
     7081 gtttcaaaat aatcaggaat agtcaaagaa tttgcaatca cactggtata aattctaagt
     7141 ctttttgcca caaaaatcca atttaaacta gctcctatag taagcccaat tgcaatataa
     7201 gaatctataa aaccacttac atataaagct cctggtaaac ccattaaaag ccaaccactc
     7261 atatcagaag cccctgcgct aagtgcagat atcacaggcc ccatagtacg cccacctaga
     7321 aaataatcct ctgaattttt attttgctta taaaaataaa aacctatata aagcattaat
     7381 aaggcataca ctacaaacat cactgctatt ggggtattaa tttgaaccac ttccatcaat
     7441 ctctccttga tcattaagat attgctctaa tgcctaaatt tccataacga tgaaaagata
     7501 tacttaaagc tttttcatta aaataattta aaagttcaaa acgaccattt aataatggct
     7561 tttctcttat aatgatttta gcaagctttg cagcctcttt ataaatctca tcatttacat
     7621 ctggctttgc taaataacgc actctttcat attctttaat actcttgata aaattttctt
     7681 tattttcttt taaaaacaat acttttgctc ctatgctttg aacaattcgt tctatcatac
     7741 taacatcttg ttcatcataa ctgatactta gatcaatatt tgcaatattt gcacctaaaa
     7801 ccacacctaa aacatctttt aagctttcat ttccacaaag tcttaaaacc atattcttta
     7861 ttttagtata agaaaaaaga ttatcttctc cacgaatatt gacataatct tttgaaacac
     7921 taaactcgtt tttataatga taagcataag attgagacat tttaattaaa ttgtttataa
     7981 aatcttgtgc ttcttttaaa tctatttgtg ctaatttttt tgaaaattta tcttcaatta
     8041 aatgatcatc aaaatcttct tgcttaatct ctaaaaattg agtgatataa ttataaattc
     8101 ccacttttct acccaaacct atagctgatt ttttaatccc accaaaaggt tgacgcagca
     8161 ctatagcccc tgtggttggt ttattgatat aaatatttcc tgcttctatg tgagtgtgaa
     8221 aatactccca ttctctttca tctaagcttt caaaacctgc agttaaacca taacctgtgg
     8281 aatttactat atcaatagct tcttttaagt ctttagcctt catcacactt aaaatcggta
     8341 caaaaagttc attcatatga gtaaaatcac cctttttagt gccatatttt atgcctggag
     8401 tcatcaaata aggattatcc tctaaaaact taggttttaa tgcccattct tcataaggtt
     8461 gtaattcatc taaggccttt tgaactttag aacttggctt atcagctaaa gtacctaatt
     8521 tatttttaaa ttcaaaagga ttgcccactg ccatagaact cgcagcatcc actaaagtct
     8581 ttttaaattc ttcatcatga taaacctctt cttctaagac tagcaaagaa gtagctgaac
     8641 atttttgacc gctattgcta aaagcagaat gaatgatatt tttaatcgca ctatcacgat
     8701 cagcaaattt agaaactata gtcgcattct ttccgccagt ttcagcactt aaaagcaagg
     8761 ttggattagc ttttaacatg gcataagcag tatcctctcc tcctgtaaga attgaaaatt
     8821 taatcgcttc atcaataagt aaatatttag aaatatcact tccttttgaa ggtaagaaaa
     8881 tcaaagcatc ttttggaata cccgaatccc aaaaacactt acaaagcata taacctgtta
     8941 gagttgaaag tgaagaaggt ttgtaaatca ccacattacc tgcggctagt ggtgcagcta
     9001 tagtacctac tgaaattcct ataggaaaat tccaaggagc tatggtaacc cctatacctt
     9061 taggtgtgaa tgtaactttt ggattttgtt ttttaagctc ttctaaagag tgcggataaa
     9121 actctataaa atcaatagcc tcgcttactt caggatcgat ctctaaaaag gttttgccca
     9181 cttctaaagc tgccaaacct atcaaatccc ctcttctttc tctcatcagt tttgcacttt
     9241 tggctaaaat ttgataaatt tcatcatgac ttttttgtgt aaatttggaa tttttagcta
     9301 cttctaaagc ttgtttgatt tctttttctc ctgctaaata agcctttcct ataactctat
     9361 cttcgatctt atctttaact tctaaaacat ttaaattttt tgctttaaaa tcaagttcgc
     9421 ctataacagg ataaacatca taatctttta aattttcata tttagtttta atttctttag
     9481 cccacactct attttgtgct aaaataaaat ccgtatcgct ttcattgcta aattttttac
     9541 cttcataaga acttatgata tttgattctt tatttctatc ttgcttacga tgtgtagtat
     9601 tatcaagagt ttttatgcct tctaaagatt ttaaaaaaag ttctttttgg atattccagt
     9661 tcttatctcc tactttaaga ttgaaaaaat aacgcataaa attatcttca cttgtatttt
     9721 catcaaggcg tcttacaaga taagcaatgg cattgttaaa atgtgcttca tcgcaaactg
     9781 gggcataaag gattagatca tgcattttag ataattcata agaacattgc aaactcatac
     9841 cttcaagcat ttcaaaagta aaagaatcca aagcacccac ttcacttatg cgtgtataag
     9901 cataagcaat ctcaaagata ttatgacttg caattcctat gttgatgtat ttataattat
     9961 ctccttcaag aataaaatca agcattttat tataattact atcagtatct atttttttgt
    10021 aaaaagtagg aagctcccaa cccctttgag acgcaatggt ttcttcactt tccatattag
    10081 cacccttaac aaaacggatc ttaataggct tcataccttt taaaaccctc tcttttgaaa
    10141 aagcaaaaag ttttttaaga tacttataag aatcaggaat ataagcttgc aaaacaatcc
    10201 ctgctttaat atcaaattta gccacacttt ccataaaagc tgcaacggtg agctctaaat
    10261 ccctaaattc ttccatatca agattgataa atttagatac accttgtttt ttctcttctt
    10321 ctaaggctaa agcataaaga taatctagtc tttttacgac ctcttcttta gaataattaa
    10381 aatctataat attaatttgt gaaaaaatag tagtaatttt tatggaaata taagtgatat
    10441 agcttgattt taaggcttct tcgtattttt gcatacgata tttactctca gcttcaccta
    10501 aaacctcttc gccgattaaa ttcacattta aggtaatttt atcttgctct tttcttttct
    10561 taatatgtgg ttctaaaaca ctaggatttg catctagaac catagcttta gtatcttctc
    10621 ttaaatgttt gacaaaaaaa ggtacactta aattaggagc aaatttgcca aaatttaaaa
    10681 agctaaaaag taggaatttt tcaaaagtgc taaaaaaatc cgctatgcca tatttactca
    10741 aagtatattc tataagctca aaacttgcat ttttatcttt acatctaaaa gaacgatcta
    10801 aaagctctat aagcataact ttatttttgg gattattaag aagtttttgc attttagcat
    10861 gaaattcttt ttcagaattt gaaatattgg cttctatttg tccttgtaat tcttcagcta
    10921 aggctaaagc tttttgtatc atttcgtatc tcctaagata aaataaattt taataaataa
    10981 tatataaata agataaaaaa taatatttta aatcatagaa aatgtataaa aaatgataaa
    11041 aaaaatttta atgggtatat aagtaacaaa aattaagaaa
//
LOCUS       DARBBO010000052        10996 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.052, whole genome shotgun sequence.
ACCESSION   DARBBO010000052 DARBBO010000000
VERSION     DARBBO010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10996)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10996)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10996
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.052"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..582)
                     /locus_tag="SB854_001107"
     CDS             complement(<1..582)
                     /locus_tag="SB854_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG0957099.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILEQKSYELSGGEATRVGLIR
                     ALVLNPKLLILDEITSAFDIKTSKEILTFLYDYQ"
     gene            complement(575..1285)
                     /locus_tag="SB854_001108"
     CDS             complement(575..1285)
                     /locus_tag="SB854_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0957100.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     ALVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKEIKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILKELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLDEFLRYYNA"
     gene            complement(1282..2076)
                     /locus_tag="SB854_001109"
     CDS             complement(1282..2076)
                     /locus_tag="SB854_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0957101.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLASFDILSTHLENLHQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKAVFIGAWWMILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2063..3007)
                     /locus_tag="SB854_001110"
     CDS             complement(2063..3007)
                     /locus_tag="SB854_001110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0957102.1"
                     /translation="MLKRLVFSIFIAFFSTFLCFVLLHFSKGSIAYANGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFSAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYKGLGSLLFKSIIFKDY
                     PIVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(3007..4542)
                     /locus_tag="SB854_001111"
     CDS             complement(3007..4542)
                     /locus_tag="SB854_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEG0957103.1"
                     /translation="MLRWFVLLFLLFLNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDISKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKNPKNNSSIYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPKHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFEANEHFYLDKVKTPRLIIKHIFDPS
                     IASAELKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNLDNEFLKDLKVR
                     QALNYAVDKESIVKNLLHDYAFVANHPLERSWANSKNFKIYKYDPKKAEDLLVSAGFK
                     KNKDGNFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKTRTLGHHGVGFTWNVYE
                     WSK"
     gene            complement(4652..7423)
                     /locus_tag="SB854_001112"
     CDS             complement(4652..7423)
                     /locus_tag="SB854_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEG0957104.1"
                     /translation="MANFKAFYNEAKYIFKDRIFNDYARCYAYGIDASCYFYIPKIVI
                     IAKNEDEIKQIIQLANTYKTPITFRAAGTSLSGQSSCDGVLVVIKFAFKKIKINKDAN
                     EITLGCGVVGIHANESLAFLKKKIGPDPATINSALIGGIINNNSSGMCCGTKDNSYKT
                     LRSIRVILANGSMLDTSDALSVARFKDENKKLINELREIKEKINANKELKDLIIKKFK
                     IKNTTGYSLNAFVDYDDEIDILAHLLIGSEGTLGFVSEVKLAVLDDLEFKACALLFFD
                     NINNAANTIKEFAKVDFVSSAEIMDYASLKAASTYDELRDILADIKEGNTCVLIQSEH
                     SNELKLDENINKIKEISKLAYKSYFSKNKAEYDLWWKIRKALLPIAASLRKAGSTVIT
                     EDVCFNIEDLADGIKSIQELFYKYGFGDNGIIFGHALAGNIHFIITPDLNNKLEFDNF
                     SNLVKEMSNIVASYGGSIKAEHGTGRMVAPFVEVEWGKQAYLINKKIKSIFDKDSLFN
                     PDVIISDDKDIYKKNIKQVSWIDEKLNTCMECGFCERFCPSNEYTITPRQRIAILREI
                     KRLESLNDDESKAKLKDIKKYYNHLVDSSCAACGVCSFSCPLGINFADFSLKYRKNNI
                     GFISKILGNLAYKNHEKTLKIAKFSLSIANKFDNLSLDNKLEKASNFLSIIPRTRAYL
                     PKVNDYELKSHKRVCNVVYFTSCLNKSFKPNEKMHDKRSLQEVFESLCKKANIGIIYA
                     PNDLCCGKAYENFQDIQDKNIQKINDFLSNIDSPIVLDHSACSAKLISDHSKYEIYDL
                     SEYLLKFIAPKLRIDKINENVGLYIMCAARKLGLNENIIKLTKLCTNGKVLIDNDTYC
                     CGFAGYKGFFKPQLNISATKGFKKFYAKTNIKRGFSTSSTCEIGLSDATGISWQHIAY
                     LLDECSEAI"
     gene            7575..7997
                     /gene="cgb"
                     /locus_tag="SB854_001113"
     CDS             7575..7997
                     /gene="cgb"
                     /locus_tag="SB854_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HEG0957105.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAKFYIDIEKKLYDK"
     gene            complement(8017..9648)
                     /locus_tag="SB854_001114"
     CDS             complement(8017..9648)
                     /locus_tag="SB854_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HEG0957106.1"
                     /translation="MPFIIELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKNKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(9698..10993)
                     /locus_tag="SB854_001115"
     CDS             complement(9698..10993)
                     /locus_tag="SB854_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0957107.1"
                     /translation="MRKSKFGTKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRKNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREHCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLKDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQILGILGIALGGAFMGYLVDKFGLFKICIFFSLTFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNENPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
BASE COUNT         4178 a         1932 c         1227 g         3659 t
ORIGIN      
        1 ctgatagtca tataaaaaag ttaaaatttc tttagaagtt ttaatatcaa acgctgaagt
       61 aatttcatct aaaatcaaca atttaggatt taaaaccaaa gcacggataa gacctacacg
      121 tgtggcttct cctccgctta actcatagga tttttgttct aaaatttgtt tttttagact
      181 aaaaaaatca aaaaattcta aaatcaagtc atcattcttt tgtaaattaa aattttccaa
      241 accatcttgt ataagatttt tgattttttt ataagggttt aaagccattt tttgatcttg
      301 aaagcaatat tgaatttgct ttcttaaaag tctttgtttg tttttatcaa gcttgtgtaa
      361 gttaagattt tcataccata cctcaccctc acttggatct tctaaaaaac aaagaattct
      421 agctaatgtg cttttacctg caccactttt acctaaaatt attaaattgt cattttcatt
      481 taaagaaaaa ttgacattat caaaaataat atgtctttct ttttttaaat accaatgctt
      541 tttaagctca taaaacttac ttaaattaca aactttaagc attataatac cttaaaaact
      601 catctaagct atataaattt gaactatttt tttctagcat aagaatttca tctgctaaag
      661 aatttaccaa atttaaatca tgagtgatac aaactaaggc tgtagtattt tttaattctt
      721 ttaaaatcga tataatctta gaagcgtttt ctttatccaa agaagctgtg atttcatcac
      781 aaattaaaat ttggggttga tttaataatg ccaaagctag gctcaccctt cttgccatac
      841 ccaaacttaa ttcattagca taagaatgcc acaaacgatc aagattttca aatcctaatt
      901 tttgaaaata agaaaaagcg taatctttta tttctttttg ttttaatttt gtatgagttt
      961 ttaaaacaag atgacataaa tttccaatat ccaaataagg ataaagacta agctctgcat
     1021 cttgcaaaac aagtgccact ttagaacgaa aatttctaag ctcttcttta ttaaaattaa
     1081 aaatacaaga attatgaaaa cttaattcat caaaacttat tgtgaaatta gaatctaaaa
     1141 gtcttaccaa agcttttcct aacaaacttt tgcccactcc actttgtcct agtatcatta
     1201 aagttttgcc tgtttttata tctaaattaa tatccttaag taataaatta ttcttcaaac
     1261 tgatatttaa atttcttacc ttcaagatct tataccccaa attttttgta aaaaattacc
     1321 caaccataaa agaggtaaaa acaacaaaag caagcttaaa agtggaaaaa gtatcatcca
     1381 ccaagcgcct ataaaaactg cttttgaaga ctcactcaaa agagtaccta aagttggaat
     1441 ttcaaatcct aaacccagtc caaaaaaact caaagtagct tctgtggcta tagcatgaac
     1501 gatattaaat ataaaaagtg taaaaatcag tgtttttaaa gcaggtatta aatctttaaa
     1561 aaaagctcta aatttagttc ttccaagcac tatatttgct ttgtaaaaat ctaaattttc
     1621 aagtcttttt aattcacttt ctataattct tgctatgaaa caccaatgaa ttaaagcgat
     1681 taaaaaaatc atcaaaaaca catcagaagt tatcatactt tgaaaaaaca tcataagtaa
     1741 aaaagcaggc aaggctaaaa aaaactctaa aatacgcatc caaaaaacat aaaaaaaaca
     1801 tcgcgctaaa aacaaatagc acaaagcaaa gataatagac aataaagatc caccaacacc
     1861 tataatcaaa gaatttctca aagcaaaaag caaacgagaa aacaaatctc tgcctaaaaa
     1921 atcagtccct aaaatataag taaaattagg agcttgatgc aaattttcta aatgagtgct
     1981 taaaatatca aaagaagcta aaaaaggtgc aaacaaggcg cataaaaaca aaaaaattaa
     2041 aggcgcaaga atgataagaa atttaaacaa aatcaagcct tcttaatcta ggatttaaaa
     2101 tcctagctac aatatcactt aaaaatgtaa aaaatgctgc aagcaaaaca ctaaaaaata
     2161 taagcgcaag cacaatagga taatctttaa aaataatact tttaaaaagt aaagatccaa
     2221 gccccttgta agcaaagaca ctttctacca cataagttcc catcataaaa cttaaagcac
     2281 ttcccccaaa ataagccaca ataggactta aagaatattt caaaactaaa aaataaatat
     2341 ctttctccct taaagcccta gcgtataaat tttgaataaa aatttgagaa aaactttcat
     2401 tgataaaatt tctagcaatc cttaaaaata acgccaaatg tgataaaacg agcaccaaaa
     2461 caggcaaaat caaatgctct aaacgattta aaaaatcatc ttcaaagcct atatcactac
     2521 ttcccataac aggcaaaatt ttccaaaaaa ttccaaaaat caaaacaaac aataaagcca
     2581 aaacaaaagg aggtaaagca aaaaaattaa aagctaaaaa agtgatgatt ttatctataa
     2641 aactttcttt ataataatat cccaaaagtg ccaaaaaaac actgagcaaa aataaaagca
     2701 ttaaggcact aaaacccaaa ataaaagtat taaaaattct ttcttttata agctttaaaa
     2761 cactttctcc acttaaaaaa gaaaccccta agtccccttt taaagcctta aaaagccaaa
     2821 ttttatactg ctctagcaaa ggcttatcaa gccctaaatt ttgttctatt ctttgaacaa
     2881 attctttact ttgtgaatta actccattag cataagctat actgccttta ctaaaatgaa
     2941 gtaaaacaaa acataaaaaa gtgctaaaaa atgctatgaa aatactaaaa actaagcgtt
     3001 ttagcactat ttactccact cataaacatt ccaagtaaaa cccactccat gatgacctaa
     3061 agtccttgtt ttgatacctt ttaaatcttt attataaact aaagcaaaat caagataggc
     3121 taagaaaata aaaggaggat tttcatacaa agcatctata aaatctttat aatatttttt
     3181 tctctcttct aaatttgaag tatttcttgc tttttgcaag gctatatcca cttttttatc
     3241 atgataatgt ccaaaattcc aaccctcatc atttaaagca ctatcttgcg aactttcaaa
     3301 taccctaaaa gtgtgaaaat caggatctaa aggacttccc cagcctatta aaaaactatc
     3361 tactttagaa taatcaaaac ttccagcagg tttagccacc accttgctta caactcctat
     3421 ttttctaaat tcgctttgca aaattccagc taaacttacc cttaaaggat cattgctcat
     3481 cgcccaaatt tcaaattcta aaattttccc atctttttca aaatttccat ctttattttt
     3541 cttaaaacct gcactcacaa gcaaatcctc ggctttttta ggatcatatt tgtaaatttt
     3601 aaaattctta gaatttgccc aagaacgctc taaagggtga ttagctacaa aagcataatc
     3661 atgtaaaaga ttttttacta tactttcttt atcgactgcg taatttaaag cttgtcttac
     3721 ttttagatct tttaaaaatt cattatctaa attaaacatt aaagcccgat aatcagccga
     3781 tttttcacgc aaaattccaa aattttcatc atttttaaaa atatttagca aagaaacatc
     3841 gattaaagct gcgtctatct tgccattttt aagctcagca ctagctatag aaggatcaaa
     3901 aatgtgtttt ataataagtc ttggagtttt taccttatca agataaaaat gttcattggc
     3961 ttcaaattca acatattcac cttttttcca ttttacaaat ttataaggac ctgtacctat
     4021 aggattttga ttaaaagagc ttgtgtttaa attctcattt tcaagcaaat gtttaggaag
     4081 cattcctatg cttaaagcat ctaaaaatgc aggataaggt ttaaagagtg tgatttttac
     4141 atgagaagga tttaaaattt ccacactttt aatgtcttca aaattgacat aaatagaaga
     4201 attgttttta ggatttttaa aggcttctat actaaatttc acatcatcag cactaaattt
     4261 gactccatca tgccataaaa catcatctct taaaaaaata tcataaacaa gcccgtcttt
     4321 actaatatcc caagacttag ccaaatcagg ttttaaactc atattttcat caaaacgcgt
     4381 aagccctgaa aatacaagat taatcactgc atcatgatcc tcgctataag caggatttat
     4441 ccttgcgatt tcattttcaa ctgctataat aagtgtatct tttggaattt tagcctcaag
     4501 attcaaaaac aataaaaata gtaaaacaaa ccatctaagc acttgtaact cctcaaattt
     4561 aaaattttaa agaattataa aataaaaaat aagaagccac aagctctatg gggggataat
     4621 ttgctttaaa ttatagagtt ttatttatca attaaattgc ttcactgcat tcatccaata
     4681 aatacgctat atgctgccaa gatatacccg tagcatcgct taatcctatc tcgcaagtgc
     4741 ttgatgtact aaacccgcgc ttaatatttg ttttggcata aaatttttta aagccttttg
     4801 tagcactaat atttaattga ggcttgaaaa agcccttgta tccagcaaac ccacaacaat
     4861 aggtatcatt atctattaat acttttccat tcgtacatag ctttgtaagc ttaattatat
     4921 tttcatttaa accaagcttt ctagcagcac acatgatata taatcctaca ttctcattga
     4981 ttttatcaat gcgtaacttg ggagcaataa attttaataa atactcgctt aaatcataaa
     5041 tttcgtactt tgaatgatca ctaattaact tagcactaca agcactatga tctaacacta
     5101 tgggtgagtc tatattgctt aaaaagtcat tgattttttg tatattttta tcttgaatat
     5161 cttgaaaatt ctcataagcc ttaccacaac ataaatcatt gggtgcataa ataatgccta
     5221 tatttgcttt tttacacaag ctttcaaata cttcttgcaa acttctttta tcatgcattt
     5281 tttcatttgg tttaaagctt ttattaagac agcttgtaaa ataaaccaca ttgcaaactc
     5341 ttttatgact ttttagctca taatcattca ccttaggcaa atacgcccta gttcttggta
     5401 taatgctaag aaaattgctt gctttttcaa gcttattatc aagacttaaa ttatcaaatt
     5461 tatttgcgat acttaatgaa aatttagcaa tttttagagt tttttcatga tttttatatg
     5521 ctagatttcc taaaatttta gatataaatc ctatattatt ttttctatat tttaatgaaa
     5581 aatcagcaaa attaatcccc aaaggacatg aaaaagagca caccccacaa gcagcacaag
     5641 agctgtctac taaatgattg taatattttt taatatcctt taattttgct tttgactcat
     5701 catcatttaa gctttcaagg cgtttaatct ctcgtaagat cgcaattctt tgtcttggag
     5761 taattgtata ttcatttgat ggacaaaatc tttcgcaaaa tccacattcc atacaggtat
     5821 ttaatttctc atcaatccaa ctgacttgtt tgatattttt cttataaata tctttatcat
     5881 cgctaatgat tacatcggga ttaaataaac tatccttatc aaagatactt ttgatttttt
     5941 tattgatcaa ataagcttgc ttaccccact ctacctccac aaaaggtgcc accatacgcc
     6001 ctgtgccgtg ttcagctttt atacttccac cataagaagc tactatatta gacatttctt
     6061 taactagatt tgaaaaatta tcaaattcaa gcttattgtt taaatccggt gtgataataa
     6121 aatggatatt gcctgctaat gcatggccaa aaatgattcc attatcacca aagccatatt
     6181 tataaaacaa ttcttgaatg cttttaattc catcggctaa atcctcgata ttaaaacaca
     6241 catcttcagt aattaccgtt gaacctgcct ttctaagact agctgctata ggcaagagtg
     6301 cttttctaat cttccaccat aaatcatatt cggccttatt cttgctaaaa tatgacttat
     6361 aagccagttt ggaaatttct tttattttat ttatattttc atcaagctta agctcattac
     6421 tatgctcact ttggatcaat acacaagtat tgccctcttt aatatcagct aaaatatctc
     6481 ttaactcatc ataagttgat gcagctttta aacttgcata gtccattatt tcagcagaac
     6541 ttacaaaatc aactttagca aattctttta tagtgtttgc agcattattg atattatcaa
     6601 aaaacaataa agcacaggcc ttaaattcca aatcatccaa aacagcaagc ttaacttcgc
     6661 ttacaaatcc caaagtccct tcagagccaa taagcaagtg tgctaaaata tctatttcat
     6721 catcataatc aacaaaggca ttaaggctat aacctgtggt gtttttgatt ttaaattttt
     6781 tgattattaa atcttttaat tctttattgg cattaatctt ttctttgatc tctctaagtt
     6841 cattaattaa ttttttattt tcatctttaa atcgagccac gcttaaagca tcgctggtat
     6901 caagcatact accatttgcc aaaatcaccc taatacttct taaggtttta tagctattat
     6961 ccttagttcc acagcacatt ccgcttgaat tgttatttat aatccctcca attaaagctg
     7021 aatttatagt agctggatca ggtcctattt ttttcttcaa aaaagcaaga ctttcattag
     7081 catgaatgcc tactacacca catcctaaag taatttcgtt agcgtctttg ttaattttta
     7141 tttttttaaa ggcaaattta atcactacaa gcactccatc acaagagctt tgtccactta
     7201 aacttgtacc tgctgctcta aatgttatag gagttttata agtatttgct aattgaataa
     7261 tttgcttaat ttcatcttca tttttagcaa taatcactat ttttggaata taaaaataac
     7321 acgacgcatc aatgccataa gcatagcatc tagcataatc attaaaaatt ctatccttaa
     7381 aaatatactt agcctcatta taaaaagctt taaaatttgc catagtccct ctttttaatt
     7441 tattatcaat tatataattt aataatttaa agataatttt aaatttatat ttttgagcat
     7501 aattttaaca caagtcaatt tttttctcct ttttaagata taaaatatct cttttacaac
     7561 aaaaaggaga aactatgaca aaagaacaaa ttcaaatcat caaagattgt gtgcctattt
     7621 tgcaaaaaaa tggagaggat ttaaccaatg agttttataa aataatgttt aatgattatc
     7681 ctgaggtaaa acctatgttt aatatggaaa aacaaatttc aggagaacaa ccaaaagctt
     7741 tagcaatggc gattttaatg gcggctaaaa atatagaaaa tttggaaaat atgagaagct
     7801 ttgttgataa agttgccata actcatgtta atttaggagt taaagaagag cattatccta
     7861 tagttggagc ttgcctttta aaggctatta aaaatctttt aaatcctgat gaagccactc
     7921 ttaaagcttg ggaagttgct tatggaaaaa ttgctaaatt ttatatcgat atagaaaaaa
     7981 agctctatga taaataatat aagcccattt tgggctttaa tcaaattttt ctactaaatt
     8041 tttagctaat tcctttatat tctcaccctt taattcgctg atttcaccat tttgagccaa
     8101 gaaaattcta tcagcactat caaaatatgc atcatcatgt gtgatagcaa agattgtttt
     8161 accttgctct tttagcaaag gtaaaagttt tttataaaaa aatcttctaa aaacaggatc
     8221 ttgatcagcc gcccattcat caagcactaa aatatccctt tcttcaagca aggctataag
     8281 catagctaaa cgcttttttt gccctgtaga aagtttggtt aaggtcagtt cattatcttt
     8341 gacacttgtt ttatttttaa gttctaaaaa ctccaaccaa aaagcaattt tttcttcgct
     8401 tgcaaaattt tctttattta aggttttagt aaaaagatga aaatcgctaa aaacagcaga
     8461 aataagagat ctatactcat ctaaattttt atcatctata agcgtatcat caacataaat
     8521 tccgcctttg cttggcttaa aaagtcctgt caaaagcata caaaaagtgg atttaccact
     8581 tccattttta cctattaaaa ataccaattc acctttttta agttctatat ttacaggatt
     8641 taagtgaaaa ttttcttcat aagcaaattg agtatttcta aaagaaattt ttttccattc
     8701 gctaatataa tgtgtttttt taaaaccttc tatataatca tctaattcca attttgcgat
     8761 cttatccaaa gcgatttttg ccaaaagcaa agtaggaaaa gatcctatca tagatactaa
     8821 aggggttcgt aaaaacaaaa tagaaagagc tatagttgta gcatctgcaa cacttgccca
     8881 ttcaaatttt aaagctaagt aaaactctac acccactaaa gccaaaagag ttacatttgt
     8941 ccagttgttt gagagattgt taaaaagatt gcctaaagta ctatttttct ttttcaatct
     9001 tgcattattt tcaaattcat cttcatagta aagtttggct ctatcacgat tgatcaaaag
     9061 ttctttatgt ccatctagta tattttggta attattttgc aaagcatcat cattttccct
     9121 tgcctttcta aaatactgat atactttcat catcaaaaaa ttattagtaa taaaaataac
     9181 cataatccat accacacaca aagcaaaaat ttgtggtgaa agataacata aataaacact
     9241 agtgcataaa atcaatatac ttgattgtaa aaaatcaggc aatcttaaaa gcccaaaaga
     9301 tatatttctc acatcacttc ctaaagaagc taaaattcta gccttaccta ctttagccac
     9361 tcttaacaaa ggggtatcta atatctgctt tactacacgc ctttgcattt taaaaataaa
     9421 attttgtcca aaaatactaa gtccaagttc aactatggta gaacttataa aaaatatcaa
     9481 aagcaaaaca ataaaataaa aaataggaat gttttgtgca tttttaagca aataatcatt
     9541 gataaaaaca agagttaaaa ctccaacagc acttgtaata aaagaaaaaa gcaaaaaaga
     9601 aatcaacttt aatttatttt gtttaagtaa ttcgataata aaaggcattt ataaactcca
     9661 aaatataatt ttaattataa cattttaaga gtggttatca aaattttatt ttatctttta
     9721 ctataaaaac agcacaaata gccaataacg ctaaaaaaat catatatata ctcataccat
     9781 ataaaaatgg attttcattt ttactcgcga gtgtattaag ccaaaaaacg agttgcggag
     9841 taataccgcc tgaaattgca taagcaatat tataagaaaa agaaattcct gaaaatctta
     9901 ttttagctct aaaaacttca ctcattaaaa taggtgcaaa cacattaatt ccacctaaaa
     9961 aacaaacaat cgaatacaaa atacacacca aaaccaaatt tttaagctca tataaagcat
    10021 aaaaatataa aaaagaaaaa aatacaaaag ttaaagaaaa gaaaatgcaa attttaaata
    10081 aaccaaattt atctacaaga taacccataa aagccccgcc taaagctatt cccaaaattc
    10141 ctaatatctg taaataactt ccttcaaccc cacttaaatt taaaatacta ggcataaatt
    10201 taggcattaa taaaacaagc acaataacac aacctgttaa aacccaagtc atcatcattg
    10261 atgaaaataa attttttaca atatcctttt ctttaaataa atctttaagc ggaaaagaac
    10321 taagcgatga ttcttttttc atttgtttaa aaacaggagt ttcttgcaaa aatctacgca
    10381 aataaataga aataatccca aaaattccac ctacaaaaaa agcaatacgc caagcataag
    10441 cagcaatttc ttctatacta aaaaaagcat taatgattaa aaatactata cttcctaaca
    10501 aaattcctaa agccatagct gaatttaaac agcttaaaaa gaaagctttt tgtttttctt
    10561 gacaatgttc tcttacaaaa acccaagctc caggcaattc tccacctata gctatgcctt
    10621 gaaaaattct tataagtatc aataaaacag gagctaaaaa cccaagagtt tcataacctg
    10681 gaataaaagc taagacaaag gtaggaagaa ccattagtaa aatacttagc ataaacatat
    10741 ttttacgccc aaatttatct ccaaaatgtg ccataactat accacccaaa ggacgtgcta
    10801 aatatccagc tgcaaatgct ccataagtat ttaataaagc ccaaaattca ctcatatctt
    10861 taggaaaaaa tacattggct atatattcag caaaaaagac aaaaataata aaatcataaa
    10921 attctaaagt tcctcctagt gaagaaagtc ctaagatctt aatttccttt gttccaaatt
    10981 ttgattttct cattga
//
LOCUS       DARBBO010000053        10964 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.053, whole genome shotgun sequence.
ACCESSION   DARBBO010000053 DARBBO010000000
VERSION     DARBBO010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10964)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10964)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10964
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.053"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..868
                     /locus_tag="SB854_001116"
     CDS             <1..868
                     /locus_tag="SB854_001116"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HEG0957108.1"
                     /translation="FKNAILNSPIYKDKILKLKEKKTKDIYEELAISDIQKAADKLAP
                     LFYQKNDGFISIEIDPRLHDNTTLSLGEAKRLYSAIGKENIMIKIPATKASYEVMYEL
                     MKNGISVNATLIFSLEQSQKCFEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRF
                     DRLLNPKAKEQNRIGILNANLAYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELL
                     FENSVNTAPLDAIEAFKGKTHFKKPLMNFEIYTELNQIISQSEREKACNDLLSDGLEQ
                     FCIAFEDILKAL"
     gene            complement(869..1291)
                     /locus_tag="SB854_001117"
     CDS             complement(869..1291)
                     /locus_tag="SB854_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HEG0957109.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(1288..4557)
                     /gene="carB"
                     /locus_tag="SB854_001118"
     CDS             complement(1288..4557)
                     /gene="carB"
                     /locus_tag="SB854_001118"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEG0957110.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAVDEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINPKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYVRMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTIPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
     gene            complement(4818..5567)
                     /gene="mreC"
                     /locus_tag="SB854_001119"
     CDS             complement(4818..5567)
                     /gene="mreC"
                     /locus_tag="SB854_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEG0957111.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGEKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYTAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
     gene            complement(5557..6597)
                     /locus_tag="SB854_001120"
     CDS             complement(5557..6597)
                     /locus_tag="SB854_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEG0957112.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGLDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            complement(6609..7832)
                     /gene="clpX"
                     /locus_tag="SB854_001121"
     CDS             complement(6609..7832)
                     /gene="clpX"
                     /locus_tag="SB854_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HEG0957113.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKDYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            complement(7825..8616)
                     /gene="lpxA"
                     /locus_tag="SB854_001122"
     CDS             complement(7825..8616)
                     /gene="lpxA"
                     /locus_tag="SB854_001122"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HEG0957114.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVSKDAKIGNDVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGIRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            complement(8616..9056)
                     /gene="fabZ"
                     /locus_tag="SB854_001123"
     CDS             complement(8616..9056)
                     /gene="fabZ"
                     /locus_tag="SB854_001123"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEG0957115.1"
                     /translation="MIDVMQIQEILPHRYPFLLVDKITELKVKEVVRGYKNISISDHV
                     FMGHFPGHPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVR
                     PGDRLDYEMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            complement(9150..10241)
                     /locus_tag="SB854_001124"
     CDS             complement(9150..10241)
                     /locus_tag="SB854_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HEG0957116.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSPVNKQILPASIEARIAFYKKVVLLEKKD
                     VKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYIRFSLDEENLKQNLKEG
                     FYRSTKDEMVFVEFWRFNAFFKNKWKNFEDFLKRPLSVQAEIKWRNKLFGTYNLSPII
                     ILENILPSRYEVIAKSEIYHDNQEVLVKI"
     gene            complement(10241..10696)
                     /gene="bcp"
                     /locus_tag="SB854_001125"
     CDS             complement(10241..10696)
                     /gene="bcp"
                     /locus_tag="SB854_001125"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEG0957117.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVASHEKFISKFDLKHILLSDSEKEVAKAY
                     GALGLKKNYGKEYEGLIRSTFVIDETGKIAQIYSNVRVKDHALKVLESL"
     gene            complement(10693..10899)
                     /locus_tag="SB854_001126"
     CDS             complement(10693..10899)
                     /locus_tag="SB854_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEG0957118.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITELLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKASK"
BASE COUNT         3586 a         2165 c         1307 g         3906 t
ORIGIN      
        1 ttttaaaaat gctattttaa attctccaat ttataaagat aaaattctta aattaaaaga
       61 aaaaaaaaca aaagatattt atgaagaatt agcaatttct gatattcaaa aagcagctga
      121 taaattagct cctctttttt atcaaaaaaa tgatggattt ataagtattg aaatagaccc
      181 aagacttcat gataacacaa ctcttagttt aggtgaagct aaaagacttt atagtgctat
      241 tggcaaagaa aatataatga ttaaaattcc agctacaaaa gcttcttatg aagtaatgta
      301 tgaacttatg aaaaatggta ttagcgtcaa tgctacctta attttttctc ttgaacaaag
      361 tcaaaaatgt tttgaagctt taaatgcagg tttagtcgaa tttagaaaaa acaatatagc
      421 cttaaaagaa caaaacacta gaacaccaca agctgttata agtatttttg taagtcgttt
      481 tgatagactt ttaaatccta aggctaagga gcaaaatcgt attggaattt taaatgcaaa
      541 tttagcttat aacaatatct actcaaaaaa tgaacctaat attcgcgcct tgtttgcaag
      601 caccggagtt aaaggagatg atctgccaaa agactattat atcaaagaac ttctttttga
      661 gaattctgtt aatactgctc ctcttgatgc aatagaggca tttaaaggaa aaacgcattt
      721 taaaaaacct ttaatgaatt ttgaaattta tacagaactt aatcaaatca tttctcaaag
      781 tgaacgagaa aaagcttgca atgatttatt aagtgatggc ctagagcaat tttgtattgc
      841 ttttgaagat attttaaaag ctctttaatt aacgtatttt tatcatttta ttctttgaaa
      901 gttttaatat ttttgatggg atattttcga aaaatttctc atcaagtatt atatcagcaa
      961 cacttctagc ccattcttca tcaaattctt ttccatgctt gtttgccgaa gatgaataaa
     1021 aatagccatt tttacttaaa aaattcgcat gtttacactc tttcacaata cgaatggcct
     1081 gattattggg ataaataaaa gttgtttttt tagaacgacg tactaaattt ttaaaagatt
     1141 ttggaattct tgctaaactt tttaactcgc aaaatttcgc agaagtgatt aagcaaggct
     1201 gatttttatc tctacctttt aaagcattaa tctcttctaa atttttactt aaaaatccta
     1261 ccgtagtatc tgtttgggct aaataaatca agatttaagc cactcttgta aactctttac
     1321 atctaggcaa gatttactct gtatagcttt aatcgatttt gcacctgcta aagctgatcg
     1381 taaatttgta aaataaggta ttttaaaacg aataatattt tcacgaattt ttttcgtatc
     1441 gcctttaaaa ctgtgactat cgcttgtatt gataactaag tgaatttccc catttttcaa
     1501 tttatcttca acattggggc gtccttctga aattttatgt acaagttcgc actcaaaacc
     1561 actttctaaa atttccttgc aagttccccc tgttgccata agcttaaagc caagctttac
     1621 atattctgca gcgatttttt tggtatattt tttatcctta tcttttaagg agataaatac
     1681 cacgccttgc tctggaagat gattaaacga tgcaatttga cttttcgcat aagaatttgc
     1741 aaaatccttg cttataccca taacttcacc cgttgaacgc atttcaggac ctaattctaa
     1801 atcacttcca ctaagttttg caaatggaaa tactgcttct ttcacgctca tatattttgg
     1861 agttttaggg cgtaaaattt tagtatcaaa attaaccact ttaaaagtat cataaaattt
     1921 taaagcttct tttaaatttc cttgccacat cacacgcgtt gccacttttg ctaaaggaat
     1981 acccgtagct ttactaacaa aaggtatggt acgactagct ctaggattta cctctatcat
     2041 ataaagctca ttattatgta aagcaaattg tatatttaaa agtcctacaa ctcccaaatt
     2101 taaagcaata tctgcggttt tttgtgcaat aaattcttgc attttttcat cgatattgca
     2161 aggcggcaaa gaacaagcac tgtcacccga atgaattcct gcttcttcta tgtgctccat
     2221 aattcctgca acataaacat ctttgccatc acaaatcgca tcaacatcaa tttctgtagc
     2281 attgtctaaa aactgatcga tcaaaacagg gcttttatcg cttacatcca cagcttcttg
     2341 catatagagt ctaagttcag cctcatcatt taccacgcgc atcgcacgcc cacctaaaac
     2401 ataacttggt cttacaagca caggataccc tatatcacta gccttaagaa ccgcttcttc
     2461 tacgcttgtt gcagtagaat tttttggctg attgatacct agctttgtaa taaattcggc
     2521 aaatttcttt ctatcttctg ccatatcaat tactcttgcg ctagtaccta taatcttagc
     2581 tccaaaagca cttaaacgct tagcaaattt caaaggagtt tgtccaccaa aatgcacaat
     2641 cactccatca ggtttttcac gctcaatcac cgctcttaaa tgttcgaaat caataggctc
     2701 gaaatacaaa atatcacttg tatcatagtc agtcgaaacg gtttcaggat tacaattata
     2761 cataatagtt ttaataccca tatctttaag cgcaaaagaa gcatgtacgc aagcatagtc
     2821 aaattctata ccttgtccta tacggtttgg ccccccacct ataatcatca cttttttttc
     2881 ttttttatcc ttagcatcgt ttttactttg agtgagttcg cttacattga tacttgaata
     2941 aagataagga gttaaggctt caaattcacc cgcacaagta tccacttcac taaattctgc
     3001 gatgattttt tgcttcattc ttacataata aatatcattt tggcttaatt ctaaattatc
     3061 tttcaaattt acaagcaagg ctatcatttt atctgaaaag cccatagttt ttgcttttct
     3121 caaaagagcc ttattgttta aaatatccat atcaatttgt tcttcaaaat ctacaatttc
     3181 tttaatctgt gttaaaaacc aaggatctat tttacaaagc tcataaagtt cttctacgct
     3241 aaaaccttcc ctaaaagctt gagcaacata aagtaaacgc ttttcattgg cattgcgaat
     3301 tttaaaaaca agatcatttc tatcttcaaa ttttacccta tcaaaaccac ttaaagaacg
     3361 ctcaagcgaa caaagtgctt tttgtatact ttctttaaaa gtgcgtccta tagccattac
     3421 ctcacccaca cttttcatag ctgtacctaa agttgtattt gctcctggaa atttttcaaa
     3481 ggtaaagcga ggaatttttg ttacaatata atcaatcaca ggctcgaaag atgcaggagt
     3541 tcctgtaata tcatttttaa tctcatctaa gctaaaacct actgccaaaa gtgtcgcaac
     3601 ctttgctata ggataacccg ttgccttaga agctaaagca cttgatcttg aaactcttgg
     3661 attcatttct ataactatca ttcttccatt ttttgggttg atagcaaatt gcacattact
     3721 tccgcctgta tctacaccaa tttcgcgcaa aatagcaaaa gaagcattac gcataacttg
     3781 atattcttta tctgtcaaag ttaatgctgg agctattgta atactatctc ctgtatgaac
     3841 tcccatagga tcgatatttt ctatgctaca aactatgata caattatccg ctctatcgcg
     3901 tataacttcc atttcatatt ctttccaacc taacaaactt tcttcaatca aaatttcatg
     3961 aataggtgat aaagctaaag cagtattggt aagttcttta aattcgtcca tattgtaaac
     4021 cacaccactt ccagcacccc ctaaagtata agaagcacgg atcatcaaag gaaagccgat
     4081 ttcatctacg gcttttaaag cttcgtcata attatacgca tacatcgatt ttggcaaatc
     4141 catgccaatt tttttcatac attctttaaa aacctgacga tcttcgcctt ttttaatcgc
     4201 ctcaggattt gcgcctaaaa atttcacatc tcctaaaagt ccgctttcat aaacttccat
     4261 agcaacattt aacgctactt gtccacccat agttggcaaa attgcatcaa ttttttcttt
     4321 tttaataata cttaaaatac tttcttttgt tatgggttct atataagtcg catctgcaaa
     4381 ttcgggatct gtcatgatgg ttgcaggatt tgagttgatt aatactacac gatatcctaa
     4441 ttcttttaaa gtctttgcgg cttgagttcc agaataatca aattcacaag cttgtcctat
     4501 cacaatagga ccacttccta taagtaaaat gcttttaata tctgttcgtt ttggcataaa
     4561 ttttcctaag agcataaatt tgggctgatt ataacaaaaa ttagttttat aaactttgaa
     4621 attatcgata taattttaaa aaataaacac tctgctttta atctaggaaa taatacataa
     4681 agaaatttaa gattttttat aaaattctca ttcaattata aacatttatt tgataattta
     4741 acaaaatttt tagcattaaa caaagttata ataattagca aaaatataga aaatttttaa
     4801 aaagtctaat ccttgactta taaattatca actacatata aataagcagg aatactaatc
     4861 ttaacataag gctttacttc tacactttga tacatatctt catcattaac tctattcaca
     4921 ataccgacag gtatatctga aaagaaaata ttatcaagtc cacttgttaa aatttcatct
     4981 ccggtattaa tttttgccca ttttggaata aatttaacca caatcctgcc atcttcaccc
     5041 tggattaaac ctggagcttt ggattttcct atataaacag aaaaaacaca ctgatcatca
     5101 ccttgtaaaa gagccattgc tctaccattt ttattaatag ctatacctgc agtatatcct
     5161 tgatatatca aaccacggtt tttaccaacg ggaattttgc tccaatctaa ccataatttt
     5221 ttataatcat tcaattgaac ataagaaata actctagtta aagaaacttg aggtaaatat
     5281 tttgtagaat tttgatcctc taaaatacga tttaattgat ttgcaaaact agttaccttt
     5341 acagcaatat cttctaattc tttatttcta gcttttagtt gctgaatttg atttgcttga
     5401 ttaaagtgtt ctgaaatttt ttctcccaaa taatctttaa tattataaaa attacctata
     5461 acaaaatcat taacacggag aacattttgc ttaataagtc ctccataata aaaagatata
     5521 aaaaccaaaa aggctaagac aagaacataa aaaatcttat tcttcattgg ttaattgttg
     5581 caataatgaa atttcctcta aagctttacc tgttcctttt gctacagcta aaagcggttc
     5641 atctgcgata taaactggca aacgtacaat ttcacttaag tatttatcaa gaccacgaat
     5701 caatgctccg ccacctgtta aaactacacc attttctact atatcacttg ctaaatcagg
     5761 cggcatcatt tcaagaacca tttttaaagc atcagcaatt tcttttaaat actcacgcat
     5821 cgcttctctt acatcttcgc ttgtaagttc aatacgactt aaaagtccac ttacttgatc
     5881 gcgtcctttt accaccatag aaagctcttt tggaagttgt attgctgaac ctatagtgat
     5941 tttaatctct tcgcctgttc tttcacctat gataagattg tatttttctt ttacataatt
     6001 aactatactc atatcaagct tatctccagc cgtacgaata gactttgaaa tcacaagtcc
     6061 acccaaagaa atcactccaa tctcagtagt tccaccccct atatctacta ccaaatttcc
     6121 tttaggctct tgtataggta aacttgcacc aatagctgct gccataggct cttcaatcaa
     6181 aaatacctct cttgcacctg cacttaaagc actttctctt accgcttttc tttctacttg
     6241 agttaaacca taaggaacag aaatgataat tctagggcgt aaaaaacttt ttctacggtg
     6301 tgttttttct ataaaatagc ggatcatttt ttcagtcata tcaaaatctg caatcacgcc
     6361 atctttcata ggacgaatag cttcgatatt gcctggagtt tttcccacca tatctttagc
     6421 ttctttacct acggctaaaa tttttgcttt ggaaccatac ctttctcttt caactgccac
     6481 aacagaaggc tcatttatca ctataccctt atcttttacc aaaactagcg tattagctgt
     6541 tcctaaatca atccccatat cactagaaaa aaatcctata agttgatcta atatcatttc
     6601 tatccttttt aacttatttt tctttttatt aataatgcct ttgcattgtc tttaacaact
     6661 tctttggtta ttacaatatc atagtcttta tactctggta actcaaacat taaatctacc
     6721 atcatttctt ctataatact tctaagcccc ctagcccctg tttttctctc caatgcaagt
     6781 tgtgcgatag ctcttagagc atcttcttca aattttaaat tcactccatc aatagcaaaa
     6841 agcttttgat attgcttaat aatggcattt ttaggctcag ttaaaattct taccatatct
     6901 tcttcattaa gctcatttaa agatgcaatc acatgcaaac gacctataag ctcaggaatc
     6961 aaaccaaaat gcaccaaatc atcaggttca attttctcaa gtaaagcttt attttcttct
     7021 tttgcatcat caaaaaagcc cacaacttta tcgccaagtt ttctttttaa gatagtttcc
     7081 aaaccatcaa aagctccacc acaaacaaat aaaatatttg aagtgtcaat ttgtataaac
     7141 tcttgatttg gatgttttct tccccctttt ggtggaatat ttaccaaact tccttcgata
     7201 atcttaagta aagcttgttg cacaccctct ccacttacat cacgagtaat agaacgattt
     7261 tcactcattc tagcaatttt atcaatctca tcaataaaaa ctataccttt ttgagctctt
     7321 tgcacatctc catctgcagc ttgtaaaaga cgtgttaaaa tattttccac atcctcacct
     7381 acatatcctg cttcagttaa agaagttgca tcacaaattg ctataggtac atctaaaaat
     7441 ttagctaaag tttgcgccaa taaagttttt ccacttcctg ttggcccaac aagtaaaata
     7501 tttgacttaa aaagctctgt atcatcatct tgaagttcag ctttaaaaag tcttttataa
     7561 tgattgtata ctccaacact aaaaactttt ttagctctat cttgtcctat gacataacga
     7621 tctaaataag cttttaattc ttttggagtg atatctttaa attctgtatt atgactttgt
     7681 ttaggttctt taaattcttt ttcttctcca taaataatac tataagcacc ttcaacgcaa
     7741 tattcacaaa taaaagcatc atcattttca tttgctaaaa ttcttctttg tggattctcc
     7801 acttcattgc aaaaactaca ttttctaggc attattttta cccctataga caggaattcc
     7861 gcgctttgtt tctaatataa aatgacacat ttttttaaca ttttcacttt cttgattttc
     7921 aagcaaattt ttagcatttt cttttaagtc tccttgtcta aataaagttt taaaagctct
     7981 gctaagtcta tctacttcat ctttatcaaa acgacgacga atacctacta aatttaaact
     8041 tctaatactt gcacgatttc cttctgctaa acaaaacggt actatatcct gagaaagtgc
     8101 acttgctcct gctatcatac aaccctcacc tactttgaca aattgatgaa taggtgtaag
     8161 cccgcctaca actgtaaaat ctccaagctc tacatgtcct gctaaagttg cattattagc
     8221 taaaataata ttattaccta aaagacaatc atgagcaata tgacaataag ccataataaa
     8281 agcattatcg cctatacgag taaaaccatc tcctttagct gtacctgaat ttatcgttgc
     8341 aaattctcta atagttgcat tttttcctat aacaacaccg cttttttgct cttctttata
     8401 agatatgtcc tgaggaatat cgcctactat agcataagaa aatacacgag aatgatcacc
     8461 tatagttgta tctgaaagaa ttcgagcacc ttgtttgatg acaacatcat tacctatttt
     8521 agcatctttg cttacatagg cataagcttc tattacaaca tcgtcaccaa gttgtgcacc
     8581 ctcttcaatc accgcacttg gatgaatttt tttcattatt tatccactat catagcttta
     8641 agctcggcct ctgcaactaa atttccatct acaaaagctt gccctttaaa aatccacata
     8701 ttaccacgat ttttaaccac gctcatttca taatcaagcc tatctccagg acgcacagga
     8761 tttctaaatt ttgctccatc tatgcctgtg aaataaacta ctttactttt tggatccact
     8821 ttatcttcca tactttcaaa agctaaaact ccacctgttt gagccatacc ttctaaaatc
     8881 aaaactccag gataaatagg atgccctgga aaatgtccca taaaaacatg gtcacttata
     8941 ctgatgtttt tatatcctcg aaccacttct ttaactttta attctgtaat tttatctact
     9001 agtaaaaaag gataacggtg tggtaagatt tcttgaattt gcattacatc tatcattatt
     9061 aaattaacct tgaaaacaat taaaaatttt attatataaa aaaatcatta aaaattacat
     9121 taacaaaaaa gtttttctta ataaatttct taaattttta caagcacctc ttgattatca
     9181 tgataaattt cactttttgc tatcacttca tatcttgaag gtaaaatatt ttcaaggatg
     9241 ataatagggc taagattata agttccaaac aatttattgc gccatttaat ttctgcttgc
     9301 acactcaaag gtctttttaa aaaatcttca aaatttttcc atttgttttt aaaaaatgca
     9361 ttaaatcgcc aaaattccac aaaaaccatt tcatctttag tgcttctata aaagccttct
     9421 tttaaatttt gttttaaatt ttcctcatct aaagaaaatc ttatataagc gtttttaaaa
     9481 tgcgaataaa ataaaatatg agatttaaca ggttttttat ctaattttat caaagcactt
     9541 aaaagacgat aatttagaaa tttctctctt aaaatttcaa attttacatc ctttttttcc
     9601 aataaaacta cctttttata aaaagctatt cttgcttcta tacttgcagg taaaatttgt
     9661 ttatttacag gagacattaa ttcatcaatg aaattcttat cttgtttttg ttttttaagc
     9721 ccataaatgc agccgcaata gttttgatga taaagcattt ctttttttgc taaagcaaat
     9781 tgtctttgag tgccaccatt tttacgaaaa tcaggagcta aaaactccac cccataaggc
     9841 tcacattctt tttgtaaagc attttttaac tgttctaaat cttttttagg gctggttaaa
     9901 agcgtagtag taagcttttt ttctcctatt ttagcagcaa atttaacact agatcccatt
     9961 cttacatcaa agcaaatttc acaccttgca cctttttcag gctcatcttc ataaccacgc
    10021 acagcattaa gccatttttc atactcatac tcgcccttat ataacttaat gccaagttta
    10081 tcacaagacc tttttacatc taaaaatctt agttcatatt cgcttaaagg atggatattt
    10141 ggatcataaa aatatcctat gattttttca tcaggataag tctttctaag ttcttcaata
    10201 aaataatgac tatccacgct acaacaaata tgtactagca ttaaagactt tcaagcactt
    10261 ttaaagcatg atcttttaca cgaacattac tataaatttg agcaatctta cctgtttcat
    10321 cgataacaaa agtagaacga ataagacctt cgtattcttt tccgtaattt ttcttaagcc
    10381 ccaaagctcc ataagcttta gcaacttctt tttcactatc gctaagtaaa atatgtttta
    10441 aatcaaattt agagataaat ttttcatgac ttgccacgct atcaggactg ataccaataa
    10501 tcaccgcatt tttaccacca aatttatcat aatttgcact aaaatcacaa gcttctgtag
    10561 tgcaacctgg ggtattatct tttggataaa aatacaaaat cacctttttg ccaataaaat
    10621 cttttaatgc tatttttacc ccatcttgat ttaaaagctc aaattgaggt gccttatctc
    10681 ctatatttaa actcatttac ttgcctttgc tttgatagct tctacacttt ctccgccaaa
    10741 gcctatgtca taattttcca catcttctaa aaccacaaca actctttctt tacttttatt
    10801 atatttcgtg cttaaaagtt cggtaatatc agctataagt tccgcttttt gctccttgct
    10861 taaagacggc tttgctaatt tgatatttac taatggcata atttctcctt ttttaacgat
    10921 aatttttcat aattatttca aaaaatacct aatatttttt ttaa
//
LOCUS       DARBBO010000054        10918 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.054, whole genome shotgun sequence.
ACCESSION   DARBBO010000054 DARBBO010000000
VERSION     DARBBO010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10918
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.054"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..649)
                     /locus_tag="SB854_001127"
     CDS             complement(<1..649)
                     /locus_tag="SB854_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HEG0957119.1"
                     /translation="MSKIDEISSKSKANILEHLKKAYKETIFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYSFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHII"
     gene            complement(642..2081)
                     /locus_tag="SB854_001128"
     CDS             complement(642..2081)
                     /locus_tag="SB854_001128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster-binding protein"
                     /protein_id="HEG0957120.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKIMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWTVQNFASILPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            complement(2078..2818)
                     /locus_tag="SB854_001129"
     CDS             complement(2078..2818)
                     /locus_tag="SB854_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG0957121.1"
                     /translation="MMKKVYFYATCLGSTAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKI
                     KTFSSRVIELSQYLDEVLKVDYEDKGVPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGGRL"
     gene            complement(2942..4624)
                     /locus_tag="SB854_001130"
     CDS             complement(2942..4624)
                     /locus_tag="SB854_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HEG0957122.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIILIGIWTCIIAFFLQGIIPEVIVK"
     gene            complement(4796..5365)
                     /gene="cdtC"
                     /locus_tag="SB854_001131"
     CDS             complement(4796..5365)
                     /gene="cdtC"
                     /locus_tag="SB854_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
                     /protein_id="HEG0957123.1"
                     /translation="MKKIITLFFMFITLAFATPTGDLKDFTEMVSIRSLETGIFLSAF
                     RDTSKDPIDQNWNIKEIVLSDELKQKDKLADELPFGYVQFTNPKESDLCLAILEDGTF
                     GAKSCQDDLKDGKLETVFSIMPTTTSAVQIRSLVLESDECIVTFFNPNIPIQKRFGIA
                     PCTLDPIFFAEVNELMIITPPLTAATPLE"
     gene            complement(5376..6173)
                     /gene="cdtB"
                     /locus_tag="SB854_001132"
     CDS             complement(5376..6173)
                     /gene="cdtB"
                     /locus_tag="SB854_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HEG0957124.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            complement(6170..6976)
                     /gene="cdtA"
                     /locus_tag="SB854_001133"
     CDS             complement(6170..6976)
                     /gene="cdtA"
                     /locus_tag="SB854_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HEG0957125.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAANGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            7089..7322
                     /locus_tag="SB854_001134"
     CDS             7089..7322
                     /locus_tag="SB854_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HEG0957126.1"
                     /translation="MYLKHLYFSISQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVI
                     LKLFVFDVNFNSIFKSDKEKSTFVLKNLTLEGK"
     gene            7323..8885
                     /locus_tag="SB854_001135"
     CDS             7323..8885
                     /locus_tag="SB854_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEG0957127.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            8885..10009
                     /gene="cydB"
                     /locus_tag="SB854_001136"
     CDS             8885..10009
                     /gene="cydB"
                     /locus_tag="SB854_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEG0957128.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMINSILFL
                     PFFLGFLAWIFLKDGFSVDTNGVVSMSANLYLYNFLNQMIFAILLVVGVILVLLGMVQ
                     GTKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLN
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(10203..10898)
                     /locus_tag="SB854_001137"
     CDS             complement(10203..10898)
                     /locus_tag="SB854_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HEG0957129.1"
                     /translation="MKTIGIIGGMSFESTITYYKTINQAINDKLKSLNSAKILLYSVN
                     FEEIENLQSQDKWQEAAQILTQCAKKLELAGANFIIIATNTMHKVFDEIQQNINIPIL
                     HIAKSSAKALKQENIQKIGLLGTKYTMTQDFYKKMLIEENISVITPSDEDIKIVNDII
                     FNELCKGEIKQDSKEKYLNIIKKLQEKGAKGVLLACTEIGLLISKNDTNIKIFDTSLI
                     HALDAANEALKDL"
BASE COUNT         3496 a         1777 c         1752 g         3893 t
ORIGIN      
        1 taataatatg tgcaatttgt ggcccatgaa caccaaaaac agtgataagt tctatatctg
       61 ctgttcttga aggccctgct ataaataaga tattagtagg taaaatttca ttttcttttt
      121 ttactaaatt taaagcttcg ctaagacttt taacaacatt ttctttttta agcaatacta
      181 tgcaaagttt aggtgcaagg cttagcattc taggttgggt tttacttgaa ggtataagtg
      241 caactccgtg agagcttacc cctgctcttg cgtgaatgat ggaaaaatca ctatgaaaaa
      301 cttcagatct taaattttcg atttctttat caaagcaaat ctttttttct gctttgattt
      361 gttctaaatt taaatttaaa tccgctccat aaatcatact tttaaagcta tattttgcga
      421 caatttcatt gattttttct tctaaggtat cttttgtagc attttcaacg atgtatttgt
      481 tatcgctcat tttttgcttc atttctgtaa gcatatcttg ggttgtctgg atatgttcta
      541 caggatctat actttcaatg cgtgtgaaaa ttgtttcttt gtaagctttt ttaagatgtt
      601 ctaaaatatt tgctttgctt ttgcttgaaa tttcatcgat tttactcata gcttactcct
      661 tctagttttt gcacttcttt ataaagatcc attttaattt gaggtaattc tttaaaagcg
      721 taccattttt taatcacagg caaaatgctt gcgaaatttt gtaccgtcca gttgaaataa
      781 tgtgcttttg aaagtgaaaa acgccattta tcgccattgg ttgcgatatt tttaaattgt
      841 ttaaaagcaa aggcttctag ggcattgtga tgaacattat ttgctcctaa aggtggattt
      901 ttaccttgtc ctattttatc acatcttaat ttgcgaataa gatcagccaa aggaatttgg
      961 actggacaaa cttcagaaca acgcccacaa agtgaacaga aattcaaaat atctcctgta
     1021 tgatctatac caaaaatatt aggactgatt acttctccta taggtcctgg ataagtggtt
     1081 tgataagcat gtccgccgat ttgatcataa acagggcaaa aattcataca agccccgcat
     1141 cgaatacaac gcaaagcctc ataataatcc tcatgagcta acattttaga gcgattgtga
     1201 tcaaataaaa tcacatgtac ttctttagga ccatctaaat ctccattttt tctaggacct
     1261 gtaatgatat tgttataagt tggtataaat tgtcctgtgg ctgaaggagt aagtaaagaa
     1321 accatagtag ccgcatcttc aaagctttcc atgatttttt ctataccaca aagtgcgata
     1381 tgaatatcag gtgctgtagt gcacattcta ccatttcctt cattttctat aagccaaaaa
     1441 gctccttctc ttgacatggc aaaattgacc ccactaagtc caagttttaa gccttcaaaa
     1501 tcttttctta aatgttctct agccaccgca tttaaacttt cgggttcatc gttttctaaa
     1561 tttgctccta atttttcttt gaaaatttct ccgatttcat ggcggtttct atgtatggca
     1621 ggtacaacta tgtgtaaagg gggttcttca ttaagctgta aaataagctc tccaagatcg
     1681 gtttctatag cttttaaacc ttttttttct aggtagtgat ttaggcctat ttcttcactt
     1741 gccatagact tgccttttaa aagcttggtg atattttttt ctttcatgat ttcatagacg
     1801 atttcacagg catcttcatc actacttgcc caatgcacct taatgccatt ttttgtagca
     1861 tttttttcaa attctaaaag tctttcttct aagctcatta aggcattatt tttagcttgc
     1921 ttagctttag ctcttaagcc ctgccagtct ttaaatctag catcaataac attgagtcta
     1981 tttttttgca aagtatgcat ggcagtcatt aaattttctt gcatttgttt gtcattgagt
     2041 ttaatttgaa cgatttgttc gtgaggaatt ttttgactca tagtctccct ccttctaagc
     2101 gtttaagtaa aaagtcatat aaatgtatgc cttttatatc caaacccatt cttttcattg
     2161 tgccatctat atttaaaaga caacctccat caccactgat gagatatttt gcaccgctat
     2221 tttgtatatc tttgattttg cttcttacca tagcatttga aatttcaggc tcttttactg
     2281 aaaaggttcc tccaaaacca cagcattctt cttcgtattg aagttctact aattctacgt
     2341 tttttagttt tttgataaga tttttactcg cttgtatgct tttttgcact cttaaagcat
     2401 ggcaattaga atgccaagtt acttttatag gtacaccttt atcttcataa tctactttta
     2461 aaacttcatc aaggtattgt gaaagttcta tcactctaga gctaaaagtt tttattttgg
     2521 aaaattcagg tctgttttta aaaagctctt tatagtcatg actcatcata cccgcacaag
     2581 aaccactggg tacaacgatg ggataatctt tatcaaataa atctacatta tataaagcga
     2641 tctcacgact ttcatcgaaa taacctgagt taaaagaagg ttgggcgcaa caggtttgat
     2701 tttttttgaa aatcacttca ataccctcac gccttaaaag ttttatcgca tttaaaacgc
     2761 tttgttgcat agcagtactt cctaagcatg tggcgtaaaa atacactttt ttcatcattt
     2821 ttctcctttt aggataattt aggataaata ttctaatcct gtaaaaataa aagcaaagta
     2881 aaatttctaa caaatattct aaaaacgaat atttgttgaa ataaaactta aattttttta
     2941 attatttcac tataacttca gggatgattc cttgtaagaa aaaagctata atgcaagtcc
     3001 aaattcctat taaaataata aaagctacag aatattttaa tgtgaatttg aaaagatcag
     3061 attcttttcc cacaagtcca accgctgcac aagctatagc aatgctttgt ggactgatca
     3121 tcttcccaac aaccccacct actgaattag ctgctaaaaa taaagcttcg ctaataccta
     3181 gtttttgagc gcttacttgt tgcaaggttc caaaaagtaa attagcactt gtatcagagc
     3241 ctgttaaaaa tacccctatc cagccaatga ttggtgaaaa gaaagaaaaa gcatcacctg
     3301 tgtgtgcaaa agcaagtcct aaagtagtgc tcataccact atttttagag ataaaagcaa
     3361 aggccacaac caaacctatg gtgatacaag gtatagccat ttcttttaag gtaacccaaa
     3421 agcattctgc agcatcttcg gctttgattt ttaaaatagc tatagttaaa aaagcggcaa
     3481 gtaaaatcgc tgttcctgct tgagctacgg tttttccatt gattaaatct acacccaagg
     3541 ccaaagataa aggcttagct tctcctatgc ctgtgataga agggcttaaa attccagttg
     3601 tgatattgct aaattgtaaa gtaatacttg tatagcttaa aattccgtcc ttatcaaaga
     3661 gagctttaaa ccaaggttgt gtccaaatga taatacaaac aatgagtaaa ataaaaggtg
     3721 accaagcttt taaaatttga ttaaaactta aggtgttatc ttgagtgaaa ttgctttcat
     3781 tgtcaaatct aaaaatattt tttggtttcc aaaatttcaa aaatacagtc gtaactgcta
     3841 aagaaaccac agctgaaata atatcaggta attccgctcc taggtgattt gagcttaaaa
     3901 attgagtagt tgtaaaactt agcgccgcaa ctaaaatagc tggaaaagtt tctttaatac
     3961 ctttaaatcc atccattaaa aaaactatga aaaaaggtat agtaaggctt aaaggaacta
     4021 gcattctacc taccatggca gaaactgaat gctgttctat gccgacaaga tttgccatag
     4081 caataatagg aattcccacc gcaccaaaag caacaggagc ggtatttgcg ataagacaaa
     4141 gccctgcagc ttgtaaagga cgcaagccaa gtcctactaa aagtgcagcg gttatagcca
     4201 cagggccacc aaaacctata gcaccctcta aaaatgaacc aaaacaaaaa cctattaaaa
     4261 tcacttgaat tctatgatct ggagtaatgc tcatcacgct ttttttaatg atttcaaaag
     4321 aacctgactt gatagaaagt ttgtaaagaa agattgccgc gatgataatc caagctatag
     4381 gccacatacc atttgtaaag ccttgaataa aacttgcacc cactaaattc caaggcattt
     4441 tataggcaaa taaagctact aaagtagcaa gtataacagt taaaaaacct gcttgatagc
     4501 ctttaagttt taaaacaacc aaacaaacta aaaaacatag tataggtaaa aatgccacta
     4561 aagcacttag ccaaatgttt gaaaaagggt cataaatttg ttgccatgtt aaaatttgtt
     4621 ccaatttttc ctccttgata attattatgt ataaatttat tgtaacaaaa aattacatta
     4681 aaataaaaaa attatagagt aaggtaaatt acattgtatt attattaatt attttgtgta
     4741 ttttagtaat atcataaata ttaaataaat ataaaaatag aacaagataa aaatcttatt
     4801 ctaaaggggt agcagctgtt aaaggtgggg ttataatcat tagttcattt acttcagcaa
     4861 aaaaaatagg atctagggtg caaggggcta ttccaaagcg tttttgtata ggaatatttg
     4921 gattaaaaaa agttactata cattcatcag attccaaaac taaagaacga atttgcacag
     4981 ctgaagttgt tgttggcatt atagaaaata cagtttctaa tttaccatct tttagatcat
     5041 cttgacaaga ttttgctcca aaggttccat cttctaagat ggctaaacaa agatcgcttt
     5101 cttttggatt tgtaaattgc acataaccaa aaggaagttc atcagctaat ttatcttttt
     5161 gttttaactc atcgcttaaa acaatttctt taatattcca attttgatca ataggatctt
     5221 ttgaggtatc cctaaaggcg cttaaaaaaa ttcccgtttc taagcttctt atagaaacca
     5281 tttcggtaaa atctttcaaa tctccagtag gagttgcaaa ggctaaagtt ataaacataa
     5341 aaaacaaagt aataattttt ttcatattaa atgtcctaaa attttctaaa atttactgga
     5401 aaatgatctg aaactatatg agatcttaaa cttgcaagca ttaaaatcgc agctaaaagc
     5461 ggtggagtat aggtttgttg tctatttgaa tttcctgtaa ttgcataatc aagagtccct
     5521 ccgcttgctt gagttgcgct agttggaaaa accactctaa ttctatttgc taattctcta
     5581 tccactgtac ttgttatagt agaaggatca cggttaaaat cccctgctat catccagtta
     5641 acttgaggca tatttgcaaa atgtgcatct acagctgtga taattgctcc tacatctgtt
     5701 cctccattag ctaaagcatg gatattgaaa aaagcatcat ttccattgcg aattcctata
     5761 atgggtcttg aaactgtagt aggtggaggt aaaacaatca cttcttcagc ttgcattctt
     5821 gaaactatag ctaaatttac acgattagct cctacatcaa cgcgagaata ataaataaaa
     5881 accctatcag gccttgaaag agttcctaaa ttccactcat attcatcaat aggtgttcca
     5941 ccttgttgca catggcgtcc tgttggagtg gctgttcttg gtaaagttcc tgcttcttgt
     6001 atcattaaga tatctaaggg gtttgctcca cttacaagtt gtcttacact aacactccat
     6061 ttgctttctg tggctgcgga tgagccttgc aaattccaag tgccaacatt aaaattttct
     6121 aaatttgcaa aagcaaggtt aaaagataaa aataaacata taattttttt catcgtacct
     6181 ctccttggcg atataaaggt tttgcggtaa aaggcggagt agttaaaaac cattgttgat
     6241 caaaattatc tttttttgca cactctacgg taaaaatttt aaaaaccttg tgaaaatcac
     6301 cataaagatt tgtaataggt gcttgtatgc attttccatt tcctaaattt ttaatttgaa
     6361 ccgctgtatt gctcataggg ataagtttcc acatttgtgc gtgattgctt gcatcacaag
     6421 gataatggac aattccatta ccataagcat taagacaagt attggttttg gcatttttaa
     6481 tcattgcaaa atcattagga taaagcaaaa gttgccaaac tctagcatcg ccaaatcctt
     6541 tgctatcgat taaagtatag ccccaaatcc aatttccttg tgctaaagcc caaaccgtta
     6601 aagctgctcc gctagggcct aaaatggtta aaaaatcaga aaccgcaggg cgattttcaa
     6661 aaattaaaac atcattaaaa gcttcgtctt taaagcgagg attgatccca tttgctgcat
     6721 tattgttggc actattgctt gttctagtta aaggtggggt aataggagta ataggtacta
     6781 aatcagcacc gctaattaaa cttggaattt cttgattggt aggaaaagta ggttcaagtc
     6841 ctagttttaa aggatcagta tcttcaaatt ctccaaatga acgccccaaa ggatttacat
     6901 tttcaaattt agaagaacat gcataaagaa aaaaagtcat aaaacaacat aaaataaaaa
     6961 ctataatttt ttgcattaaa aaccttgata tgtatttaaa tttttaagaa aataataaca
     7021 taaatttcat tataattttc cgctttttaa aaatgtttta ttttgttgtt tttaaaggta
     7081 gaatttatat gtatcttaaa cacttatatt ttagcatctc tcaaattttt aatttttaca
     7141 aagaaggttt taaaaattta actcttggaa agaccctttg gaaaattatt tttatcaaac
     7201 tttttgttat gtttgtgatt ttaaaacttt ttgtttttga tgtaaatttt aattctattt
     7261 ttaaaagcga caaagaaaaa agcacttttg tactcaaaaa tcttacactc gaaggaaaat
     7321 aaatgaacga acttagtagc gttgattggt caagagcgca gtttgcttta actgcacttt
     7381 atcatttttt gtttgtgcct ttaaccttag gcttgtcttt tatgatcgct atcatggaaa
     7441 ccatctatgt aaaaactaaa aatgaaagat ggaaaaaaat caccaaattt tggctttcat
     7501 tatttgctat aaattttgct atcggtgtag ctacaggcat tataatggaa tttgaatttg
     7561 gaacaaactg ggcaaattat agctggtttg tgggtgatat ttttggtgca cctttggcgg
     7621 ttgaaggtat tatggcattt tttttagagg ctactttttt tgcagttatg ttttttggct
     7681 gggataaagt aagcaagggt tttcacttac tttcaacttg gtgtgtggct ataggaagta
     7741 atctttctgc tttttggatt ttagtggcaa atggttggat gcaatatcct gtaggaatga
     7801 gctttaaccc tgacacagca agaaatgaaa tgcaaagctt ttttgaagta gcactttctc
     7861 ctgtagctat ttcaaaattt ttacatacca taggcagtgg ttatgtaatt tcagctttat
     7921 ttgtaatggg aatttcagct tggtttatgt taaaaggacg ccatattatc gaggctaaaa
     7981 aaagcttagt tgtaggagct agttttggtt tggtttgttc aatctttttg tttttcagcg
     8041 gagatgaaag cgcttaccgt gtaactcaaa ctcaacctat gaaacttgca gctatggaag
     8101 gggtttatca aggtgaacat cgtgcaggac ttgtaccttt tggaatttta aatcctaaaa
     8161 aaaccataga taataacgaa agtgtgtttt tatttgacat tactatacct tacgctcttt
     8221 ctatattagg aaaccgtgat ccaaattctt ttgttccagg aattgaagat ttgatctatg
     8281 gaaatgaaag caaaggtata gaacctatgc aaaatcgtat cgatagagga aaaatcgcta
     8341 tacaagctct aaaagactat aaacttgcta aagaaaacaa tgatacaata gctatggcaa
     8401 atcacaaatc cattttagaa actcatttta aagattttgg ttatggatat ttagaaaaac
     8461 caagcgatac tattccacct gtggctttaa ctttttatag ctttcatatc atggttgctt
     8521 taggaagttt tttcttttta cttttcatcg ttacgcttta tcttaccatg gcaaatgata
     8581 ttgagaaatt tagaaaagta ctttgggtgt gtttgttatc cattccattg ggttatattg
     8641 ccgctgaagc aggttggatt gttgctgaag taggcagaca accttgggca attcaagact
     8701 tgcttcctgt acatatcgca gcaacacaac ttggaaaagt caatgttcaa atttcatttt
     8761 ggatttttgc agtacttttt acagcattat tgattgcaga agttaaaatc atgcttactc
     8821 agattaaaaa aggttttgac gcacatgcag gacatactcc acttatgggc aaaggagaaa
     8881 aataatgttt tttggtttag aacttgaagg tttgcaaatt tattggtggt tgattttaag
     8941 tttacttggt ggacttttag tttttatgtt ttttgttcaa ggtggacaga ctttaatcga
     9001 tgagcttagc aaggatgagc ttgaaaaaac tatgctagtt aattctttag ggcgtaaatg
     9061 ggagcttggt tttacaactc tcgtactttt tggcggagca gcttttgcag cttttccact
     9121 tttttatagt acaagttttg gcggagctta ttgggcttgg ctttgtattt tattttgttt
     9181 tattttacag gctgtggctt atgaatatcg caaaaaagaa aataatgttt atggctctaa
     9241 aacctatgaa atttttctta aaattaatgg ttatttaggt gtgtttttaa tcggagttgc
     9301 agtaagtagt ttttttagcg gttctgaatt tatcttaaat gagcataatt ttgtttcttg
     9361 gcaaaatcct ttgcacggct tagaactttt acttaatcct tttaattatc tcttaggctt
     9421 agctttagta tttttagcaa ggcttttagg cgcagcgtat tttatgaaca atatcaatga
     9481 tgagaatatc aaaataagag ctatgaaaaa actcatgatc aatagtattt tatttttacc
     9541 ttttttctta ggttttttag cgtggatttt cttaaaagat ggttttagtg tagatacaaa
     9601 tggagttgta agcatgagtg cgaatttata tttatataat ttcttaaatc aaatgatttt
     9661 tgctatcttg cttgttgttg gtgtgatttt agtgctttta ggtatggttc aaggaacaaa
     9721 aggttgctct aaagctattt ttaccctagg acttggaacg gttttaacag tttttgcttt
     9781 attatcaagc attggtttag gtcaaagtgc tttttaccca tctttaagtg atttacaaag
     9841 ttctttaact ttaaaaaatg caagttcaag ctattatact ctaaacgtca tggcttatgt
     9901 atctttactt gtaccttttg ttttagctta tattatctat gtttggaatg caatggataa
     9961 agtaaaaatc acacgcgaag aaatcgcaaa cgatgatcac gcatattaag gagaaaaaat
    10021 gttacatact ttgtttttat tggcttggcc tttagtaatt tatctgagct ataaatttat
    10081 aatgctaaat atcaatcaat tagaaaaaga tagcaaacta taaagcaaga taagatttaa
    10141 accgatataa gtataaatct tttcaaaata ttgcaatttg cccatttttg ggcatctttt
    10201 aatcataaat cttttaaagc ttcattagca gcatcaaggg cgtgaataag gcttgtgtca
    10261 aaaattttga tatttgtatc atttttggat attaataaac caatttcagt gcaagctaaa
    10321 agcactcctt ttgccccttt ttcttgtagt ttttttataa tatttaaata tttttcttta
    10381 gaatcttgct tgatttcacc tttgcaaagc tcattaaaaa tgatatcatt aacgattttt
    10441 atatcttcat cactaggagt aataacgcta atattttctt caatcagcat ttttttataa
    10501 aaatcctgcg tcattgtgta tttagtaccc aataaaccaa ttttttgtat gttttcttgt
    10561 tttaaagcct tagcagaact ttttgcaata tgtaaaatag ggatatttat attttgttga
    10621 atttcatcaa aaaccttatg catagtatta gttgcaatta ttataaaatt agcccctgca
    10681 agttctaatt ttttagcaca ttgagtcaaa atttgtgcag cttcttgcca tttatcttgg
    10741 ctttgtaaat tttctatttc ttcaaaatta acactgtaaa gtaaaatttt tgcagaattt
    10801 aaagatttta atttatcatt tatagcttga tttattgttt tataataagt aatagtgctt
    10861 tcaaaactca ttccgcctat aataccaatg gttttcattt ttctccttaa gaattaat
//
LOCUS       DARBBO010000055        10903 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.055, whole genome shotgun sequence.
ACCESSION   DARBBO010000055 DARBBO010000000
VERSION     DARBBO010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10903
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.055"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            1..1476
                     /gene="kdpA"
                     /locus_tag="SB854_001138"
                     /pseudo
     CDS             1..1476
                     /gene="kdpA"
                     /locus_tag="SB854_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=3
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit A"
     gene            1486..3531
                     /gene="kdpB"
                     /locus_tag="SB854_001139"
     CDS             1486..3531
                     /gene="kdpB"
                     /locus_tag="SB854_001139"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HEG0957130.1"
                     /translation="MSKKQNKLITKEILNNAIKGAFLKFDPRFMVKNPVMFMVEVGSI
                     LTLILSIFPTLFNGNSDERIYNILITFILFIILFFANFAESIAEGRGKAQAATLRQSK
                     KDSKARHIKSDGSEEMLNSSELKIGDIVLVKAGELIPNDGEIIEGTASVDESAITGES
                     APVMREAGGDFSSVTGGTTVLTDFLKIKILVGAGESFLDKMINLVEGAARQKTPNEIA
                     LNTLLIVLSLSFLMVVVSLYPFMQFLGVSLPISWLVALLVCLIPTTIGGLLSAIGIAG
                     MDRVTRFNVIALSGKAVESCGDVDTMILDKTGTITFGNRLANEFYEVQGISKEEMIKA
                     CVLSSLKDETPEGKSIVALAQKMGYELEGNDIKEFIEFSAQNRMSGVDLQDNTKIRKG
                     AFDAIRAYISEMNGKIPSDLETKVMEISNLGGTPLVVCKNEKILGVIYLKDTVKPGLK
                     ERFDELRKMGIKTLMCTGDNPLTAATIAKEAGLDGFIAECKPEDKIKAIKKEQAQGKI
                     VAMTGDGTNDAPVLTQADVGIAMNSGTQAAKEAANMIDLDSNPTKILEVVEIGKGLLI
                     TRGSLTTFSMTNDIAKYFAILPAMFSVVLPQMQILNIMHLATPKSAILSALIFNAIII
                     PLLIPIAMRGVKFKPMKSEHLLLRNLSIYGLGGMIAPFIGIKIIDIPTAWILRILGV"
     gene            3567..4056
                     /locus_tag="SB854_001140"
                     /pseudo
     CDS             3567..4056
                     /locus_tag="SB854_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246928.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit C"
     gene            4133..6059
                     /locus_tag="SB854_001141"
                     /pseudo
     CDS             4133..6059
                     /locus_tag="SB854_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
     gene            complement(6054..8027)
                     /gene="uvrB"
                     /locus_tag="SB854_001142"
     CDS             complement(6054..8027)
                     /gene="uvrB"
                     /locus_tag="SB854_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEG0957131.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNIPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFNRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPYTLFDYFAIKDRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            8181..8411
                     /locus_tag="SB854_001143"
     CDS             8181..8411
                     /locus_tag="SB854_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957132.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            8401..8643
                     /locus_tag="SB854_001144"
     CDS             8401..8643
                     /locus_tag="SB854_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957133.1"
                     /translation="MADNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            8640..9077
                     /locus_tag="SB854_001145"
     CDS             8640..9077
                     /locus_tag="SB854_001145"
                     /inference="COORDINATES: protein motif:HMM:NF019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEG0957134.1"
                     /translation="MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            9059..>10903
                     /locus_tag="SB854_001146"
     CDS             9059..>10903
                     /locus_tag="SB854_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEG0957135.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKTKKN
                     LKAIVLKECQKPDFKTVEIKEITEYFLTPLQFELANFIVYYYASKLGFVLGFFETSPK
                     YECHKMFFKDTPKLSNQQQNVLSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLERFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FCKQKSFRLKGTFFESKKHFLYDENELSITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNVLKCHYCNYTSLIEQNCPSCKGEMLEARKMG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKDFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFEKY
                     IEDYDAFLKDELENRKDLYPPFKRLLRILIEDKDQQSSQKLCEKLAYQFKNIKQVELV
                     GYGICGVEMLHGKYRFYLLLRSENHKALVAIENYILQFKNVSADIDPID"
BASE COUNT         3705 a         1467 c         1929 g         3802 t
ORIGIN      
        1 taatttttta tttacaagat aaactttttt aaatcccaat tcgataaatt ctataataag
       61 gggatttgaa tttaaatact gtaattagtt ttattacaaa tacaaacctt cagcattata
      121 gtggagagaa tgctttaagt ttgctttcgc aaaatacagg cattttgctt gctatgtttg
      181 tttcaagtgc gagtggatat tctgcttgta tggctttttg tcgtgcttta tgtagtatgc
      241 aaatgggaaa tttttatgaa gattttacgc gtattattac gcgtttgatg ttgcctttaa
      301 gttttatttt ggctgtaatt tttatctctg aaggcgtggt gtaaaattat cacgcaaatt
      361 ttagcgtgct tactttagaa aataaatttc aaagcattgc cacaggtcct gttgcagctc
      421 ttgagtctat aaaacattta gggacaaatg ggggtggttt ttttggtact aattcaagca
      481 tgccttttga aaatcctact ttacttacaa attttttgca aattttatcc atgatgctta
      541 ttcctagtgc ctgtgttgta gcttttggat tgatggttta tcatagaaaa gaaatacaag
      601 gttttgctct tatgggaaaa gaagaaaaaa aaaaaggggg ggggttattt ttggtgcaat
      661 ggggattatt tttatcattt ctttgctttt aatttatttt agcgaaaaaa tgtcaaatcc
      721 aaatttggat tctttgggtt taaatgcaaa tttgggaaat ttggaaggta aagaaataag
      781 atttggcaca gatggttcga gtttatttag tgctgtaact actgctttta ctacaggaag
      841 cgtcaataat atgcacgata gtttaaatcc tttaagcatc agtgctactt tgctaaatat
      901 gatgctaaat gtagctttcg gtggcgaagg agtagggctt atgaatatga ttatttatgt
      961 gctcttaacc gtgtttattt gtgcattaat gataggtaga actccagaat tcttgggtaa
     1021 aaaaatagaa agcgcacaaa tgaagcttat agctttggta attcttatcc atcctttatt
     1081 aatccttgtt ttaagtgcat tagctgttgt ttttgcaaaa gatagtataa gcaatcctag
     1141 ctttcatggc ttggctcaaa ttttgtatga atttagttct tcggcagcaa ataatggttc
     1201 aggacttgaa ggtttaaaag atgataattt attttggaat ttaagcacag cttttgctat
     1261 gttttgtggg cgttatttgg ttttaatagc tcagcttgct atagctggat cgcttttggc
     1321 taaaaataca caagaaaata ctgcaaattc tttaaaaacg gataatttaa cttttatgtt
     1381 tgtgcttgtt tgtattatat atatttttgc tgcacttact tttttccagt gcttacttta
     1441 tcaagcgttg cagaatattt atctttatgg cattaaggag agtcaatgtc taaaaaacaa
     1501 aataaactca ttacaaaaga aattttaaat aatgccataa aaggagcatt tttaaaattt
     1561 gatccacgct ttatggtaaa aaatcctgtt atgtttatgg tggaagttgg atcgattctt
     1621 actttgattt taagtatttt tcctactttg tttaatggaa attctgatga aagaatttat
     1681 aacatcttaa tcacttttat tttatttata atcttgtttt ttgcaaattt tgcagaaagt
     1741 attgcagaag gaaggggtaa agcccaagca gctaccttaa gacaaagcaa aaaggattct
     1801 aaagctagac acataaaaag tgatggcagt gaagaaatgc ttaattctag cgagttaaaa
     1861 ataggtgata tagttttagt taaagcaggt gaacttatac ctaatgatgg agaaattata
     1921 gaaggtactg caagtgttga tgaatcagct attacaggtg aaagtgcacc tgttatgcgt
     1981 gaagcgggcg gtgatttttc ttctgttaca ggtgggacta cggttttaac tgatttttta
     2041 aagattaaaa ttttagttgg agctggggaa agttttttag ataaaatgat caatcttgta
     2101 gaaggtgctg cgcgtcaaaa aactccaaat gaaattgctc ttaatactct tttaattgta
     2161 cttagtttga gttttttgat ggtggttgta agtttatatc cttttatgca atttttaggc
     2221 gtgagtttgc ctatttcatg gttagtagca ttgcttgtat gtcttattcc tacaactata
     2281 gggggacttt tatcagctat aggaatagca ggtatggata gggtaacgcg ttttaatgtg
     2341 atcgcacttt caggcaaggc tgttgaaagt tgtggtgatg ttgatactat gattttggat
     2401 aaaacaggaa cgattacttt tggaaaccgt ttggcaaatg aattttatga agtccaaggt
     2461 ataagtaaag aagaaatgat taaagcttgt gttttatcct ctttaaaaga tgaaactcca
     2521 gaaggtaaaa gcatagttgc attggctcaa aaaatgggtt atgaattaga aggtaatgat
     2581 attaaagaat ttatcgaatt tagcgctcaa aatagaatga gtggtgtgga tttgcaagat
     2641 aatacaaaaa ttcgcaaagg tgcttttgat gctataagag cttatataag cgaaatgaat
     2701 ggaaaaattc ctagcgattt agaaactaag gtaatggaaa tttcaaatct tggcggcact
     2761 cctttggtag tgtgtaaaaa tgaaaaaatt ttaggagtga tttatctaaa ggatacagta
     2821 aaaccaggac ttaaagagcg ctttgatgag cttagaaaaa tgggcataaa aactttaatg
     2881 tgtaccggag ataatccttt aacagcagct actatagcta aagaagcagg gcttgatgga
     2941 tttatagcag aatgcaagcc tgaagataaa ataaaagcca ttaaaaaaga acaagcccaa
     3001 ggtaagatag tagccatgac aggagatgga accaatgatg ctccagttct tacacaagct
     3061 gatgtaggta tagctatgaa ctcaggaact caagcagcca aagaagcagc caatatgata
     3121 gatcttgatt ctaatcctac taaaatttta gaagtagttg aaataggaaa aggtttgctt
     3181 attactagag gtagtcttac aacttttagt atgacaaatg atattgctaa gtattttgct
     3241 attttacctg ctatgtttag tgtggtttta cctcaaatgc aaattttaaa tattatgcat
     3301 ttggctaccc cgaaaagcgc tattttatca gcacttattt ttaatgctat tattatacct
     3361 ttgctcatac ctattgctat gcgtggagtt aaatttaagc ctatgaaaag cgagcatttg
     3421 cttttaagaa atttgagtat ttatggttta ggtggtatga tagcaccttt tatagggata
     3481 aaaataattg atattcctac agcttggata cttagaattt taggagtgtg atatgcttag
     3541 aaactttgct tagttttttt gtggtaatgc taatattgtg tactcttgtt tatccttttg
     3601 ctttaaatac agttgcaaaa tttatttttc cttatcaatc aagtggaagt ttagtagata
     3661 aagaaggtcg tccgactttg gatgtaagca aagcggtagg ttcaaagctt ttgggtcaag
     3721 attttaataa accttatttt ctacattcaa gaacatctgt gtcaaattac aatacaagcg
     3781 atacaaatga aagcagtgta agttcaggtg gatttaatta tgctatgtca aatcctgctt
     3841 taaaagagcg tgtgcaaaaa gatttgcaaa aatttttaga tgaaaatccg caaattacaa
     3901 aagaacaaat tcctttggat ttcaggatca ggtcttgatc ctcatatcag tcttcaagca
     3961 gccctagtgc aaattcctag gataagtcaa tcttcaaaaa tcaccaaaga agaactagaa
     4021 aaaatcattc aagaaaatac tgagtctaaa ttttagggat ttttggggaa gaaaaggtta
     4081 atgttttagc tgttaatata gctattgcta aagccatgaa aaaagaataa acatgcaaag
     4141 acaaagtcct gaacaaattc ttaaaaaact tgaggttaaa gctaaggaag aagaaaaaaa
     4201 caaacttgta aaattaaaaa ttttcttagg ttatgctgca ggttctggaa aaacttatgc
     4261 tatgttaagt gaagccagaa ctttaaggga taatggagtt gatgttgttt taggctatat
     4321 agagcctcac gatagacctg aaacaatggc tttaacacaa ggttttgaaa gtatagctaa
     4381 tcttgaaatt ccttataaaa atatagtatt aaaagaattt gatttagacg ctacccttaa
     4441 gagaaaacct gctttggttt tagtagatga gcttgcacac actaatgcta aaggcttgcg
     4501 taatgaaaag cgttttcaag atatagaaga acttctaaaa gcagggattg atgtttatac
     4561 tactttaaat atacaacatt tagaaagttt aaatgattta gtcgctaata tcagtaagat
     4621 agaagttaaa gagcgtattc ctgatcgtat ttttgatgag gctgatcagg ttgaacttgt
     4681 tgatattgaa cctaataagc ttttaaaaag aatgcaagat ggtaaaattt ataaggaaaa
     4741 acaagctaaa ctagcacttg aaaatttctt tcgccaagaa agacttatag ctttgcgtga
     4801 gattgcctta agaagacttg cttcaagagt gaatttaaga gcaagtgaac aaaggcttat
     4861 taatgatgat ttagcttatc atactggaga gcatatttta gtttgtatta atgcttcaaa
     4921 tgcaaaggtt attcgtgcag ctgcaagact tgctttagct tttcatgcta aattgagtgc
     4981 gctttatata aaaaatccca atattaaaga agaaaaagcc ttagaagaaa atatagaact
     5041 agctaaaagt tttgatgctg aaatcattag cgtatatgat gatatagcaa gacaaattgc
     5101 agagtattca agccttagca atgtttctaa aattgtttta ggtaaaaata aagataaaaa
     5161 aagtttaaag aagagatttt tgaagctgtt gctaaaaaag cacccaatat tgatttatat
     5221 cttgtcaatg aaaatcaaat ttctactcct aaaatacgaa gtaaaaaagg ttttgatttt
     5281 ttaggttttt taaaaatcac aggagttttg cttttagcaa cttttatagc ttttgtattt
     5341 cataaattta atactcagcc aagtaatata gttatgattt ttattttagc agtttttgct
     5401 tcttctttta tttctgataa taaaattttc gccttttatt cttctttggt aagtgttttg
     5461 atttataatt ttttcttttt agaacctatt tttagtttta aagttcatga tagtggaaat
     5521 attattactt ttacaactat gtttatagtt ggatttttaa cagctgtttt tactagaaga
     5581 ttaaaattgc aatctaaaga actcactaaa agagcttata gaacagctat tttacttgaa
     5641 aatagtgaaa aattagcaag agtaaaaagc aaacaagagc tttgggaaca acttggaaat
     5701 caagctttaa aattattaaa tttacctatt attatttatc ctataaataa aaacaatatt
     5761 ttatcgaaac ctttgttgtt ttttaacgat gataagcaaa tgttaaaaaa ttgttttagt
     5821 gctgatgaga ttgctattgc tcaatgggtt gcaacaaata aagaaagagc aggtgtttgt
     5881 acaaataccc tgcctaatgc taatgctatg tatttaccta tagaagatgg gaaaaaacta
     5941 aaggggttat aggtatagtt ttaaaagaaa aacgtccctt gcaagacttt cagtatgaaa
     6001 ttttaagtgc tttacttaat gaggcaggag ttagaacaag ggatatattt ttattataaa
     6061 tcccttaatt tattaatctc atctctaata gcagcagctt tttcaaactc aagtgcttta
     6121 gctgcttcaa gcatttgttt tcttaattct ttgacaagtt ttgctctttc gctagcaggc
     6181 attttttcta gttttttacc tttgcgataa atttcgccta aatcctcttc atttttcaaa
     6241 ctttcttcaa tatggcgttt gactgaagtt ggcgtgatat tgtatttttt attataagcc
     6301 atttgaagtt tgcggcgttc attggtagta tccatagctt cttgcataga ttttgtaatc
     6361 tttttgcaaa aaagcaaaac cttaccattg acatttctag ctgctcttcc catggtttgg
     6421 attaaacttg tagtacttct taaaaagcct tccttatctg catccataat ggcaatgagt
     6481 gaaacttcag gcaaatcaag tccttctcta agtaagttaa tgccaattag catatcaaaa
     6541 gcaccgcttc ttaaacctct tatgatttca ttgcgttcta tagcatcgat atctgagtgc
     6601 atgtatttga cttttatacc aagctctaaa taataccttg taagctcttc agcgagtttt
     6661 ttagtcagta cagttactaa aacccgttcg tttctttgta tgactttttt agcctcatca
     6721 aataaaattt caacctgatt atcactatct tttaattcta tcaaaggatc aagcagtccc
     6781 gtaggacgca tgatttgatg aaagatgttt tctttgctaa gttcaagttc taaaggtgca
     6841 ggtgtagctg aaacaaaaag aaattgacaa tttttatgga taaattcatc aaacattaaa
     6901 ggacggttat ccaaggctga aggcaaacga aaaccataat ccaccaaggt ttgttttctg
     6961 cttctatctc ctgcaaacat acctctaaat tgtggtaaag atacatggct ttcatcgact
     7021 ataacaagaa attttctatc tttaatcgca aaataatcaa aaagcgtata aggagtatca
     7081 ccttctttaa gtcctgttaa atgccttgca tagttttcaa ctcctttaca cattcctgtg
     7141 cttgtaagca tttcaagatc aaattcaacc cgttgtttaa ggcgttgata ttctacgagt
     7201 ttattttcat gttcaaaata agcaaggcgt tcgttaagtt ctgcttttat gtcttttatc
     7261 gcttgtttta atcttgtttc gcccacgcta aactggcttg taggatagag tatgaagcgt
     7321 tttaaatctt tacctttttt attttctaaa acattgtaat gatacatagc atcaagctca
     7381 tcgccaaaaa attcaagtct tactacttca tcttcataat aagctggata aatatctata
     7441 atatctcctt gaactctaaa atctgcacga ttaaaaaaat tatcatttct tttataaccc
     7501 atatctacaa gtttttttaa aagttctttt tgtgaaattt gcatacctag ttcaaagatt
     7561 aaaaccatgc ctatgtattc atttggatta ccaagtccat aatttgccga aacactagct
     7621 atgcaaacta catcttcata acttaaaaga gaagcagtag cactcagtct taaacgctct
     7681 aagtcttcat tagtagagct atctttttct atgaaaacat cagtgcgtgg gatataggct
     7741 tcaggttgat aataatcata ataagatata aaatattcca catgattttt agaaaaaaag
     7801 cctttaaatt cgctataaag ttgtgcacaa aggcttttgt tgtgactcat gataagagtg
     7861 ggtatattaa gttctttaat gacatttgcc atggtaaagg tttttccact tcctgtaacg
     7921 cctagtaagg tttgatattt gttgcctttt tttatgcttt ttactatgcc ttttatggct
     7981 tcttgttgat cgggactggg tttaaattcg ctggtaagtt ctaacatttt tctactttat
     8041 ttttattttt gaaaaaattt taaaagaaaa tgctttaatt aaaaattaat tgacaataaa
     8101 aacctaaatt taaatttttt tctgctacaa tatcaaataa tattttccat aaattacaaa
     8161 ttttttaaga aggcaaaaat atgtttgatg aaaaaataat caatactatg acagataaag
     8221 taaatgaact cattgaaaaa tataacgaag tttgcgaagc caatgaggct ttaagaaatg
     8281 agcttgtaag cgttaaagcg caaaatgaag caaaaagtaa tcaaatcatg cgtttagaag
     8341 aagaacttaa atctcgcaat atagaaagcg aagatattta taagaaaata gaggctgttc
     8401 ttggcagata atctaaaaca agtcattgtt aatgttaatg caaaagattt cattgttaag
     8461 tgcagtgaag aatttgcaaa ttttttagaa gatgatatcg ctttgatttc tggcggtact
     8521 aaaaaaatag aacttaaacg ctttgtagat gcgtttgtta aaaaaagtta tgaaaattat
     8581 attttagaaa gagaacttaa gaagctaata aaagcaatca atgaagaact cccgacaaaa
     8641 tgaataaagc ttttactctg cttgagcttg tttttgtgat tttgattttg ggaattttat
     8701 caagcttatc tttatctttt atcaatacta caaaagatga ggttaaaatt ttaaaattaa
     8761 aaatggacta tgaaatgcta agctcagctc ttgctttaat gcgtagtcaa atgagactta
     8821 aaaatttaaa ttttccagaa attttagata atgcacaaaa caatcaagcc aaagaaaaac
     8881 tcttttattg tttaaatgat tgtgattatt ctttgcttga tacacctatt tattctgatt
     8941 ttaaatcttg gataaaaata ggtaaaaatc actatagatt tgcattaaac gccaaagaga
     9001 tggttgaatt tatttatgat tctaaagaag gtttgttaaa gtgtatagga agttctagat
     9061 gcaaagatct gatataagat attatgaact tgcaatttgt ggtttgtatt tggataattt
     9121 aacttttcat agttttgatg aaatcaaacc tttaacacaa gtattagtgg atttaaaaac
     9181 taaaaaaaac cttaaagcta tcgtgcttaa agaatgtcaa aaacctgatt ttaaaaccgt
     9241 agaaattaaa gaaattacag agtattttct aactcctttg cagtttgaat tggcaaattt
     9301 tattgtttat tattatgctt caaaacttgg ttttgttttg ggtttttttg aaactagtcc
     9361 taagtatgaa tgtcacaaaa tgttttttaa agatactcct aaactaagca atcaacaaca
     9421 aaatgtctta agttttcttc aaaaagaaaa taattccttg ctttttgctg atacgggtag
     9481 tggcaagacc gaaatttata tttctttgat aaaagagtgt ttagaacagg ggaagcaagc
     9541 tttgcttttg atgccagaaa tcgcacttac tccacaaatg caaaagcgtt tagaagtgta
     9601 ttttaaggat aattttttcc tgtggcattc taaaatttca aagaaaaaaa agcaagaata
     9661 tttagagcgt ttttgcaagg gagaagtact tttagtagca ggtgcaagat cggctttgtt
     9721 tttgcctttt agaaatttag gacttattgt agtagatgaa gaacatgata attcttataa
     9781 ggcttccaat cagcctttta tcaatgcaag agatttagca ctttttttgg gtcaaaaaaa
     9841 taatattaaa gtggttttag gttctgcaac cccatcttta acgagttttt gcaaacaaaa
     9901 aagttttaga ttaaaaggaa ctttttttga gagtaaaaaa cattttttat atgatgaaaa
     9961 tgagcttagt ataacaccta tgcttttaag cgaattagaa aaaagtttaa aacatcaaaa
    10021 acaagctata gtgtttttac ctacaagggc taattttagg caaatcattt gcaaggattg
    10081 tggggaaacg ataaaatgtc ctttttgttc tattgctatg agtatgcata aaaagaaaaa
    10141 tgttttaaaa tgccattatt gtaattatac ttctttgata gagcaaaatt gtccaagttg
    10201 caaaggagaa atgttagaag ctagaaaaat ggggactgct gaacttttag agcttttgca
    10261 aaatgctttg cctttagcaa aaatagcaaa atttgatagc gatgaaatca caagcgttaa
    10321 aaagcttaat actattttaa aagactttaa tgaaaataag atcgatatac ttattggcac
    10381 ctctatgctt gctaaagggc atgattatca tagcgtggat ttgagtgtga ttttagggct
    10441 tgatgagtat ttgttgcgtc ctagttttag agcgagtgaa gaaactttag ctttagctat
    10501 gcaagttgct ggtagggcag ggcgtaaagg tgaagcaaga gtgcttttac aaacaaaaaa
    10561 tagagctttt tttgaaaagt atatagagga ttatgatgct tttttaaaag atgagttaga
    10621 aaatagaaaa gatctttacc ctccatttaa acgcctttta agaattctta tagaagataa
    10681 agatcaacaa tcctcacaaa agctctgcga aaaacttgcc tatcaattta aaaatatcaa
    10741 acaagtagaa ttagtaggct atggaatttg tggagttgaa atgctgcatg gaaaatatcg
    10801 tttttattta ttgcttagaa gtgaaaatca caaagcttta gtggcaattg aaaattatat
    10861 tttgcaattt aaaaatgtaa gtgcggatat tgaccctatt gat
//
LOCUS       DARBBO010000056        10778 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.056, whole genome shotgun sequence.
ACCESSION   DARBBO010000056 DARBBO010000000
VERSION     DARBBO010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10778)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10778)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10778
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.056"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            48..776
                     /locus_tag="SB854_001147"
     CDS             48..776
                     /locus_tag="SB854_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG0957136.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLVDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            798..1577
                     /gene="peb1A"
                     /locus_tag="SB854_001148"
     CDS             798..1577
                     /gene="peb1A"
                     /locus_tag="SB854_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HEG0957137.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKNYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQNYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            1579..2331
                     /locus_tag="SB854_001149"
     CDS             1579..2331
                     /locus_tag="SB854_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG0957138.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            2342..3001
                     /locus_tag="SB854_001150"
     CDS             2342..3001
                     /locus_tag="SB854_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG0957139.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            3109..4038
                     /locus_tag="SB854_001151"
     CDS             3109..4038
                     /locus_tag="SB854_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEG0957140.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGVLDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            4205..6316
                     /locus_tag="SB854_001152"
     CDS             4205..6316
                     /locus_tag="SB854_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation protein A"
                     /protein_id="HEG0957141.1"
                     /translation="MTQLSTKILWLFVATLGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHTLAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSITPEEITTLTTNIGEYTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKIANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIRKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            6297..6494
                     /gene="kcuS"
                     /locus_tag="SB854_001153"
     CDS             6297..6494
                     /gene="kcuS"
                     /locus_tag="SB854_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HEG0957142.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     REEFFKECLDKKYNSGGLNKC"
     gene            complement(6534..6947)
                     /locus_tag="SB854_001154"
     CDS             complement(6534..6947)
                     /locus_tag="SB854_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG0957143.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKKIHGFLNA"
     gene            7009..8841
                     /gene="ciaB"
                     /locus_tag="SB854_001155"
     CDS             7009..8841
                     /gene="ciaB"
                     /locus_tag="SB854_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HEG0957144.1"
                     /translation="MNNFKEIAKLIRKYKERNNALYEFLDKEDVGEYFRSLISLSELK
                     QDKTTMLAILRRLIDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIGLIMNIFEISWTKEIIEKNNKILSTQFPNLDDAME
                     FLRKNHLYQKTPEGKICERSYGVLVRIGNLWKFVPYARFFENEILKLEFAFENMIDQL
                     KIFASNEEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEFAWMKVKSPLQVGHPLEYY
                     EDNYTHAVALEWDIRIEDENDFDVLKFGSEIKESFEHVYKNIGLEDCELEKEVLSNIE
                     KTQLYICTPMIFYGAELKGLFSAQVVPNDEFVSSKAGKKIFAFINFVYENAKTKPFMK
                     ISSEIFDKEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGHIFFIANDTEKTMNQNGFF
                     KNIEEYKATTGGLINFFYHEQDDLIMPVFHELIKRAIGLISWQRVDEVRPYYTEALIH
                     LSLLFESEVLIFENNNLKINFDLGHYEKFKELTLKNYHELAKHYALRLDAKEFLSRFC
                     EIEDNIFLPIMSKCKEFVKFYYDLYEKIGNEIDNSGEFERYKKK"
     gene            8943..9239
                     /locus_tag="SB854_001156"
     CDS             8943..9239
                     /locus_tag="SB854_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEG0957145.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            9366..10265
                     /gene="cysM"
                     /locus_tag="SB854_001157"
     CDS             9366..10265
                     /gene="cysM"
                     /locus_tag="SB854_001157"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HEG0957146.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHRKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDQVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(10272..10778)
                     /locus_tag="SB854_001158"
     CDS             complement(10272..10778)
                     /locus_tag="SB854_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HEG0957147.1"
                     /translation="MFFIKNHQNSYDFILKSDLKEETTLKDFKGDKLIIYFGYTYCPD
                     VCPATLSLVGKALKQINNPKAHLLFISLDPNRDNNLSNTNEWLRYFYPKADALIAKDE
                     KTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEKGHFYKEISDLNPQEILRE
                     LRIFLNSQ"
BASE COUNT         3696 a         1321 c         1988 g         3773 t
ORIGIN      
        1 aataatttta attaatttta tatttagtta aaaataaagg aaaaaacttg attgaattaa
       61 aaaatgtaaa caaatactac ggaactcatc atgttctaaa gaatattaat ctttctgtta
      121 aagaaggtga gaagcttgtt attataggtc caagtggaag tggaaaaagt acaactatcc
      181 gttgcatgaa tgggcttgaa gaagttagtt caggcgaggt cgtagttaac aatcttgttt
      241 taaatcataa aaataaaatt gaaatttgtc gaaaatattg tgcaatggtt tttcagcatt
      301 ttaatttata tccacatatg acggttttgc aaaatttgac cttagctcca atgaaacttc
      361 aaaaaaaatc taaaaaagaa gctgaagaaa cagcttttaa gtatttaaaa gtcgtaggtt
      421 tagtggataa agcaaatgtt tatccagcaa ccctttcagg cggacaacaa caacgcgttg
      481 ctatagcaag atcactttgt actaaaaaac cctatatttt atttgatgaa cctacttcag
      541 cccttgatcc agaaaccata caagaggttt tagatgtaat gaaagaaatt tcacatcaaa
      601 gcaatactac catggtggtt gttacacacg aaatgggttt tgcaaaagaa gtagcagata
      661 ggattatttt tatggaagat ggtgctattg tggaagaaaa tattcctagt gaatttttct
      721 caaatccaaa aaccgaaaga gcgcgactct ttttagggaa aattcttaaa aattaaccaa
      781 aattgaaagg agaaaaaatg gtttttagaa aatctttatt aaagttggca gtttttgctc
      841 taggtgcttg tgttgcattt agcaatgcta atgcagcaga aggtaaactt gagtctatta
      901 aatctaaagg acaattaata gttggtgtta aaaatgatgt tccgcattat gctttgcttg
      961 atcaagcaac aggtgaaatt aaaggttttg aagtagatgt tgccaaatta ctagctaaaa
     1021 gtatattagg tgatgataaa aaaataaaac tagttgcagt taatgctaaa acaagaggcc
     1081 ctttgcttga taatggcagt gtagatgcag tgatagcaac ttttactatt actccagaga
     1141 gaaaaagaat ttataatttc tcagagcctt attatcaaga tgctataggg cttttggttt
     1201 taaaagaaaa aaattataaa tctttagctg atatgaaagg tgcaaatatt ggagtggctc
     1261 aagctgcaac tacaaaaaaa gctataggtg aagctgctaa aaaaattggt attgatgtta
     1321 aatttagtga atttcctgat tatccaagta taaaagctgc tttagatgct aaaagagttg
     1381 atgcgttttc tgtagacaaa tcaatattgt taggctatgt ggatgataaa agtgaaattt
     1441 tgccagatag ttttgaacca caaaattatg gtattgtaac caaaaaagat gatccagctt
     1501 ttgcaaaata tgttgatgat tttgtaaaag aacataaaaa tgaaattgat gctttagcga
     1561 aaaaatgggg tttataatat gaatgaaagt gtaggttttg ttgaacattt aagacaaatt
     1621 cttacttctt ggggtttata tgatgaaaat agtataagcc cttttgcggt atggaaattt
     1681 ttagatgctt tggataataa agatgctttt attaatggtt ttatttatac tttagaagta
     1741 agcattcttg ctttgcttat agctacaatt tttggaacta taggcggagt tatggctaca
     1801 agtagattta aaattatcag agcctacact agaatttacg tagagctttt tcaaaatgtt
     1861 cctttggtaa tacaaatttt ctttttgttt tatgccttgc ctgttttagg tataaggctt
     1921 gatatattta ctattggtgt attgggtgtt ggggcgtatc acggagctta tgtaagcgag
     1981 gtggttagaa gtggaatttt ggctgtgcca agaggtcagt ttgaagcttc tgcgtctcaa
     2041 gggtttactt atattcaaca aatgcgttat attatagtac ctcaaaccat tagaattatt
     2101 ttaccaccga tgacaaatca aatggtaaat ttaattaaaa atacctctgt attgcttatt
     2161 gtaggtggag ctgagttaat gcattctgct gatagttatg cagctgatta tggaaattat
     2221 gcgccagctt atatatttgc agcggtttta tattttataa tttgctatcc tttggcttat
     2281 tttgcaaaag cttatgaaaa taaattaaaa aaagcacatt taacgagata aagggttgtt
     2341 aatggaaaat gtttttaatg cgcaaaatat tgaattttta atgcaaggtt tatttctgac
     2401 attaaaaata gccttggcaa cttgtattat ttcgattgtt tttggaactt ttttagctat
     2461 aactaaaaat tatggagata gattaagtaa atttttagca gcttgctata tagatatttt
     2521 tagaaatact cctttattgc tatggatgct cgcagcttgt tttgttttgc ctgtattttt
     2581 tggacaattt cctcaagctt tttggggtac tataggattt tcactttata cgagttcggt
     2641 tatggctgaa attattagag gcggattaaa ttctatacca aaaggtcagt ttgaagcagc
     2701 ttattcacaa ggttttggta aattttttac tcttttttat attattttac cacaaacttt
     2761 tagaaaaata atacctgctt tattatctca aattgtaacc actgtaaagg atacagctta
     2821 tttagcaggt ctgggtatag ctgaacttac ttataattca aaaactatat tggcaaaact
     2881 aacaagtttt gaagaaattt tagcgatgat aggtgttgtt gcgggaattt attttataat
     2941 atgtttttca ctttctatgt tggtaagata ttatgccaaa aagacagctt acatttctta
     3001 aaaaagctta tatttttata taagcttttt aaatttacag cagtttttaa catttttttt
     3061 attaaaatct tttgtattaa ttcataattt tattgattaa ggttttttat gcgaggttat
     3121 aaaatttttt caggctcagc taatgtcgaa tttgcaagac aagtttctaa atatctctcc
     3181 ctgcctttaa gtgatgctgg agtaaagcgg tttagtgatg gagagattag cgttcaaatt
     3241 gatgagagtg tacgcggaaa ggatgttttt attattcaaa gtacttgcgc tcctacaaac
     3301 gataatttaa tggaactttt aattcttaca gatgctttgc gtcgctcaag tgcaaattca
     3361 attacggcta ttatcccata ttttggctat gcgagacaag atagaaaagc aaatcctaga
     3421 gtgccaatta ctgctaaact tgtggctaat ttgattcaag cagctgggat tgatcgcgta
     3481 gctacgatag atttgcatgc aggacaaatt cagggttttt ttgatattcc agtagataat
     3541 ctttatggaa gtatagtttt taatgattac attaaagcca aacattttaa aaatgctatt
     3601 ataggaagtc cagatatagg gggtgttgca agagctagga gtgttgcaaa gcatttagga
     3661 cttgatatag ttatagttga taagcgtcgt gaaaaagcca atgaaagtga agtaatgaat
     3721 attattggag atgtaaaaga taaagaagtt atcttagtgg atgatattat tgatactgct
     3781 ggcactatag ttaaagccgc ggaagcttta aaagaaaaag gtgcaaaatc tgttatggct
     3841 tgctgtactc atgcagtttt aagtggaaaa gcctatgaga gaatagcaag cggagtttta
     3901 gatgagcttg tggtaacaga tactatacct ttaaaagagc aattaccaaa tattaaagta
     3961 ttaagcgtta cacctgtttt tgctgaagta atacgtcgtg tttatcataa cgaaagtgta
     4021 aattctctct ttatttagat taaaaaagct taaagattat ttttaagctt ttcattttta
     4081 tgctacttaa agaaacaaaa agcatatatt tttttaaaaa tgtgaaaaaa ctaaacatct
     4141 ttctatacaa tttaatctat aaatctgcta ttctttgaaa atattttatt ttcttaggag
     4201 aaatatgact cagttaagta ctaaaatttt atggttgttt gttgcaactt taggcgctat
     4261 ttgttttggt tatttagctt tacaaaatgg cgaaagtgta tcagcgattt atttggtggt
     4321 tgctgctgta tgtatttata tgataggata tagattttat gggcgttttg tagcttataa
     4381 ggttttagaa cttgataaaa atcgtgcaac accagcactt gtagaaaatg atgggcgtga
     4441 ttttgtgcct acaaataaag ctgtattatt tggacatcat tttgctgcta ttgcaggagc
     4501 aggtccatta gtaggaccta tcttggctgc tcaaatggga tatttgcctt ctatgctttg
     4561 gattttagta ggaggagttt tagcgggtgc tgtgcatgat tttgttgttc tttttatatc
     4621 tactcgcaga aaaggtagaa gtcttggcga gatgattaag gatgagatgg gtaaatttac
     4681 aggtggagtt gctatggtgg cgatttttgg cattatgctt attattattg ccattttagc
     4741 tatggtggtt gtaaaagctt tagcagaatc tccatggggt ttatttacta tcgcaatgac
     4801 tattcctata gcaatattta tgggaattta tatgcgtttt atccgtccag gtagagtagg
     4861 ggaggcttct ataataggtt ttgtgctttt aattttggct attcattatg gtagcgttat
     4921 agctgctgat ccttattggg ctaaaatatt tactttagaa gctccaactt tggcaattgt
     4981 tatgatggct tatggtttta ttgcttctgt tttacctgtg tggtttttac ttgctccaag
     5041 agattatctt tcaacttttt tgaaaatcgg tgttattgtg gtaatggctg tagctattgt
     5101 tttggttgct cctgatttac aaatgccaaa agcaaatact cagtattttg atggaacagg
     5161 tccagtattt gcaggtggag tgtttccatt tttatttatt accattgctt gtggtgcgat
     5221 cagtggtttt catgctttga tttctagtgg aactactcct aaaatgcttg aaaacgaaac
     5281 tcatactttg gctgttggat atggctctat gcttgctgag agtgctgtgg cgattatggc
     5341 tttaatttgt gcttgtattt tacatccagg tctttatttt gctataaatt caagctctgc
     5401 tttgatagga acagatgttg taaatgtagc acaaactatt tcaagttggg gatttagtat
     5461 tactcctgaa gaaattacta ctttaaccac aaatatagga gagtatacta tactttcaag
     5521 aacaggggga gccccgactt ttgctatagg tgtagctttg atcttgcatg aactttttgg
     5581 cggcgtggat ttgatggctt tttggtatca ttttgctata ttgtttgaag ctttatttat
     5641 tttaacagcg gtggatgctg ggacaagggc ttgtcgtttt atggtgcaag atatattggg
     5701 taatgtttat aaacctttag gagatattca taattatcca gctggacttt tggctacggc
     5761 tttaagtgtt gcaggttggg gatattttct ttatcaaggc gccattgatc ctaagggagg
     5821 aatttataca ctttggcctc tttttggcgt gagcaatcaa atgcttgcgg gtatggcttt
     5881 gcttcttgct acaactatac ttgtaaaaat gggcaaggca agatatactt gggttacttt
     5941 agtacctgcg gtatttgtct tagtggcaac tctgtatgga ggaattcaaa aaattatgcc
     6001 ttatgaagaa ggcaataaaa tagcaaatgc ggtaagtcat gtagccgccg ttagcataca
     6061 aagtcaaaaa attaaagatt tagaatttaa attaaataat actaaagatg aaaaagaaat
     6121 ttctacaatt agaaaagaaa tttcaatagc cactcaaaat aaagttggaa atttacttaa
     6181 tgcaattctt tgtgtgttct ttatgatagc taccttgctt gttataattt cttgcatagg
     6241 aatttgttta ggtaaaatta aaattcctct taaagaaact aagtatatta agattgatga
     6301 atttcaaaaa atttaagtat tattatgaaa aagccgaaag gttttttcat cccttggtgg
     6361 gactttctag ttatgataag tatttagaac acatgaaaca aaaacatcca ggaaaaattc
     6421 caaaaaccag agaggaattt ttcaaagaat gtctagataa aaaatacaat agcggcggtt
     6481 taaataaatg ctgataagct taaaggataa agttttatca tacaaaataa gctttaagca
     6541 tttaaaaagc catgaatttt tttgagttct tcactaatag gctttttctt tccatctctt
     6601 gtaacactta cataagttac taaagccgaa gttacattaa tgcaagaagt acaaccttga
     6661 gaatccactc tttgagctgt gacttctact tcaacgctga ttgaagtatt acccacattt
     6721 acaactttag aataacaaga aattatatcg cctataaaaa caggttcttt aaaaactact
     6781 ttatccatag agatggttac aacgcgttca ggagaaagtt ctcttgctgc gatagctcct
     6841 gctaaatcga tttgtgaaag tatccatccg ccaaaaatat ttcccgctgg atttgtatca
     6901 cttggcatag ctacaatttt taattttggc tctcccatat ctctcatttt tactccttat
     6961 tttaaaaaat gaattataat taaaaaagtt aaaaaggaga ataaaagtat gaataatttt
     7021 aaagaaatag ctaaattgat tagaaaatac aaagaaagaa ataatgcgtt atatgagttt
     7081 ttagacaaag aagatgtggg cgagtatttt agatctttga tttctttaag cgaattaaaa
     7141 caagataaaa caaccatgct agccatactt aggcgtttga ttgatttaaa ggaagaaaat
     7201 ttagttcaag agtggaaaaa aaacaatttt aaggaagata agattataga gttaaaacat
     7261 aagttctatg aagaggttag aaagttctat gaaaaagaac atcaaaattt aattaatgaa
     7321 ataaaagaga aaaaactttt aaataatttt tatcagtctt taatacaagg agtgcataat
     7381 ataggtttaa ttatgaatat ttttgaaatt tcttggacta aagaaattat agaaaaaaat
     7441 aataaaattt tatctactca atttccaaat ttagatgatg caatggaatt tttacgtaaa
     7501 aatcatttat atcaaaaaac tccagaagga aaaatttgtg agcgaagcta tggtgtttta
     7561 gttagaatag gaaatttatg gaaatttgtt ccttatgcga gattttttga aaatgaaatt
     7621 ttaaaattag aatttgcttt tgaaaatatg attgatcagc ttaaaatatt tgctagcaac
     7681 gaagaggaaa aagcttatat agaatatttt gaaaaattaa aattagcgtt ttgtgaaaaa
     7741 gatgaagata gagttataaa agcctggcaa gaagctgaat ttgcttggat gaaagtaaaa
     7801 tcacctttac aagtgggaca tcctttagaa tattatgaag ataattatac tcatgcggta
     7861 gcattagaat gggatataag aatagaagat gagaatgatt ttgatgtttt gaaatttggc
     7921 agtgaaatta aggaaagttt tgaacatgtt tataaaaata taggacttga agattgtgaa
     7981 ttagaaaaag aagttttatc taatatagaa aaaactcaac tttatatttg tactccgatg
     8041 atattttatg gtgctgaact taaaggttta ttctcagctc aagtcgttcc aaatgatgag
     8101 tttgtaagtt ctaaggcggg taaaaaaata tttgccttta taaattttgt atatgaaaat
     8161 gctaaaacaa agccttttat gaaaatttct agcgagattt ttgataaaga atttttggat
     8221 tttggaagaa atattttatt ttatcaggaa aaaatttgga aaagggttta tgaagtatca
     8281 actataggcc atgaatttgg tcatatattt tttattgcta atgataccga aaaaacaatg
     8341 aatcagaatg gtttttttaa aaatatagaa gaatataaag ctactacagg tggacttata
     8401 aatttctttt atcatgaaca agatgacttg ataatgcctg tttttcatga acttataaaa
     8461 agagctattg gacttatttc ttggcaaagg gttgatgaag ttagacctta ttatacagaa
     8521 gcacttattc atcttagctt gctttttgaa agcgaagtat tgatttttga aaataataat
     8581 ttgaagataa attttgattt agggcattat gaaaaattta aagaactaac tttaaaaaat
     8641 tatcatgaat tggcaaaaca ctatgcttta agacttgatg caaaagagtt tttaagtaga
     8701 ttttgtgaaa ttgaagataa tatttttctt cctattatgt ctaagtgtaa agaatttgtt
     8761 aaattttatt atgatttata cgagaaaatt ggcaatgaaa ttgataatag cggagaattt
     8821 gaaagatata agaaaaaata ataaagtttt ttgaaaaaaa cttaaaaaaa gctgtttttt
     8881 acttgatatt gttttttaaa tatgctaaaa ttaggcgttt caattaaaac aaaggagctt
     8941 ttatgactaa agcagatttc atttcattag ttgctcaaac agctgggcta acaaaaaaag
     9001 acgctactac tgctactgat gcagttattt ctactattac tgatgtttta gctaaaggtg
     9061 atagcatcag ttttattggt tttggtactt tttcaactca agaaagagct gctagagaag
     9121 ctagagtacc aagcacagga aaaacaatca aagttcctgc tacaagagtt gcaaaattta
     9181 aggtaggtaa aaaccttaaa gaagctgttg caaaagcaag cggcaaaaag aaaaaataag
     9241 acttcggcta gataaattct agccttcttt cttaattaat tcagatattt tgtatctttt
     9301 atttacttta tttttttaaa cttttataaa actatcatta ttaaacaaaa aaggatatta
     9361 aaattatgaa agtacatgaa aaagtaagtg agcttatagg aaatactcct attatacatt
     9421 tgaaaaaatt tggtatcaat gtttttgcta aatgtgaatt tttaaatcct agtcattcta
     9481 taaaagatag agcagctttt gaaatgatta aagatgcttt agatagtaaa aaaattaatc
     9541 aagatactac aatagttgaa gcaactagtg gaaatactgg aatttctttg gctatgattt
     9601 gtgcagattt gggacttaaa tttattgctg taatgcctga atctatgagt ttagaaagaa
     9661 gaaaaatgat aacactcttt ggcgctaggt tagaattaac tcctgcaaat ttaggaatga
     9721 aaggagcggt tgataaagca aatgaaatat tattaaatac tccaaattct tttatggttt
     9781 ctcaatttga aaatatttca aataaaaatg cgcatcgcaa gaatacggct ttagaaattt
     9841 taagagattt ggataatgaa cttgatattt ttgtagctgg ttttggaact ggcggtacta
     9901 ttagtggagt tggggaaata ctaaaagaaa aattagaaaa agtgcatatt gttggagtcg
     9961 agcctctaaa ttctccattg cttagcaaag gtgaagcggg aagccataaa atacaaggaa
    10021 taggggcgaa ttttatacct gctattttaa ataaagaagt tatagatcaa gtgatcacag
    10081 taagtaatga agatgctata aatacagcca aagaacttgc caaaagtggt ttaatggtag
    10141 gtatatcaag tggagcaaat gtatttgccg caagtatgct agcaaagaaa tttccagata
    10201 aaagaatttt aactatgcta aacgatacgg ctgaaagata cctctcaact gatctttttg
    10261 cttaagtata attattgaga atttagaaaa attctaagtt ctcttaaaat ttcttgtgga
    10321 tttaaatcgc taatttcttt ataaaaatga cctttttcat caataagata aagcatattg
    10381 ctatgtgcta tagaataacc cataaaagaa tcatttagat ctattttttg atattgaaca
    10441 ttatattgtt ttgttatttt ttgaagagtt ttttcatctt ttgcaattaa ggcatctgct
    10501 tttgggtaaa agtatcgtaa ccattcgttt gtattgctta agttattatc tctatttgga
    10561 tctaaagaaa taaaaagaag gtgagcctta ggattattga tttgctttaa ggctttgcct
    10621 actaaactaa gagttgccgg acaaacatca gggcaataag tatatccaaa atagataata
    10681 agcttatctc ctttaaaatc ttttagagtg gtttcctctt ttaagtctga ttttaagata
    10741 aaatcataag aattttgatg atttttaata aaaaatat
//
LOCUS       DARBBO010000057        10383 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.057, whole genome shotgun sequence.
ACCESSION   DARBBO010000057 DARBBO010000000
VERSION     DARBBO010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10383)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10383)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10383
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.057"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..291)
                     /locus_tag="SB854_001159"
     CDS             complement(<1..291)
                     /locus_tag="SB854_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEG0957148.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTYSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLETTPSKRPKKLFYISIEAFYIEKEQLRE"
     gene            complement(288..2267)
                     /locus_tag="SB854_001160"
     CDS             complement(288..2267)
                     /locus_tag="SB854_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEG0957149.1"
                     /translation="MAKIFVFLVFAFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVIHEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VIKDIKVQNISQDTEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKNSIVSK
                     AKSDDKIYVLKSSKTNQGVEFELNADLDKDQLKSFALDEKGNYRFISDFDGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKIIFSKETTSQKKTEQVSKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQEPLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNVITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNNNLTLGFYIQTTNQNANKKATQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(2267..3358)
                     /locus_tag="SB854_001161"
     CDS             complement(2267..3358)
                     /locus_tag="SB854_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEG0957150.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDAPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEAKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGVNGYRLDKLISVKELMEKLVNGE"
     gene            complement(3355..4560)
                     /locus_tag="SB854_001162"
     CDS             complement(3355..4560)
                     /locus_tag="SB854_001162"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEG0957151.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITERFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMYLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(4572..6767)
                     /locus_tag="SB854_001163"
     CDS             complement(4572..6767)
                     /locus_tag="SB854_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEG0957152.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICGHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITMEIPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(6751..6975)
                     /locus_tag="SB854_001164"
     CDS             complement(6751..6975)
                     /locus_tag="SB854_001164"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEG0957153.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(6986..7705)
                     /locus_tag="SB854_001165"
     CDS             complement(6986..7705)
                     /locus_tag="SB854_001165"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEG0957154.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSIVKNN"
     gene            complement(7757..8950)
                     /locus_tag="SB854_001166"
     CDS             complement(7757..8950)
                     /locus_tag="SB854_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEG0957155.1"
                     /translation="MRKNILIFFCFFLFVDISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNEDLLKSKSN
                     MEGKLISLMAKDFAYDLPIPQGYIESEESFMAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINESLKDYNAQLAKLQSLKQKQISEINKQKTDRAIYAKKLDDLQAQ
                     QEELRKTLNQLKIINDKEDANSNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(8947..9753)
                     /locus_tag="SB854_001167"
     CDS             complement(8947..9753)
                     /locus_tag="SB854_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsX-like permease family protein"
                     /protein_id="HEG0957156.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILITNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNSIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVVDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(9740..>10383)
                     /locus_tag="SB854_001168"
     CDS             complement(9740..>10383)
                     /locus_tag="SB854_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0957157.1"
                     /translation="KLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKSTLLKSFYGD
                     LEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVMLPLMIKGY
                     SKKVCHDQATKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLLLCDEPTGN
                     LDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMNEIF"
BASE COUNT         3361 a         1964 c         1219 g         3839 t
ORIGIN      
        1 ttctcttaat tgttcttttt cgatataaaa agcttctata ctgatataaa aaagtttttt
       61 aggacgctta gaaggagtag tttctaaaaa gcgtttcaaa gtaagaaaaa aatttaaacc
      121 tataccaaaa ccactctctg cgataatgaa attttcttga tttttccatt caaaagaata
      181 agtgtaaaca aatttgcttt catttaagcc atctttggaa ttaaaataaa aatcatcaaa
      241 atccaaagaa aaaggagtat tatccttaaa aattagctta gcttttttca tcggttatta
      301 taaaaataac tctcaactcc atcggcaata cccttaacca ataaatcttg aaaagcttta
      361 ttggcgattc ttttgccttc atttggatgt gtaatatagc caatttcaat caaaattgca
      421 ggcatttgcg cacctactaa aacccaaaaa ggtgcttctc ttacaccgcc atctacaatt
      481 ttatactttt tgcgtgtttg agtgagtata tttttttgta catcaatggc tagtttattt
      541 gaagcaacga ttttttcacg atttaagaaa tttaaaatac tttgttttga gaaataatta
      601 atctcttcaa aatccccttg attttctttt tctgctgcct ttttacttct ttcacttctt
      661 gcaggactta aaaagaaagt ttccacgcct tcgctacttt tggcttttgt ggcatttggt
      721 gctgcgttag catgtataga aataaacaaa tccgctcttt tatcattggc atatttggtt
      781 ctatcacgaa gattgataaa tttatccgaa cttctagtat aaagcacttt ataaccgcgt
      841 tttttaagtt catttccaag ttttaaagcc gtacttaaaa ctatatcttt ttcttttaaa
      901 cttccttttt tatcgcttaa agcaccgcta tcttttccac catgccccgc atcgataacc
      961 acaagctttc ctgatttgta atttgtattt aaagttttac tagaactttg agttgctttt
     1021 ttgtttgcat tttgatttgt agtttgtata taaaaaccta aagtgagatt attattatcc
     1081 aactccttta aaagtttaaa ttctttagga gcactcaaaa ccacacgaac ggtttttgga
     1141 ttgtattgag taactgtaat cacattttgt ccaaaagtaa agctttttct attaccttct
     1201 aacacaccct taaaacttac aacatatcgg aatttttgat ctttggtatc aaatactgct
     1261 atttcttttt catctaaatc atcgcttaaa tttaacacca cagcattaga aattttatcc
     1321 acatctaaaa catataaagg ttcttgattt tctttttcat tattggtttt tttatcttgt
     1381 ttttttgttt ctaaaacttt ggttttaatt tctgtttttt gatcttgctt tttctctgaa
     1441 attttactaa cttgctcagt ctttttttgg ctagtagttt cttttgaaaa aattattttt
     1501 tcttctttaa aagatatatc aataggaatt ttttctttag cataaaccac tatgcgtatg
     1561 gttttgggat taaattgtga aatcactaaa cgatagtcat caaatttaaa ctctttttta
     1621 cccccttcta aaaccccatc aaaatcacta ataaaacgat agtttccttt ttcgtctaaa
     1681 gcaaaacttt ttaattgatc cttatccaaa tctgcattta gttcaaactc tacaccttgg
     1741 tttgttttac ttgactttaa aacataaatt ttatcatcgc tttttgcttt agaaacgata
     1801 ctgttctttg gtgcttgcga agttttagaa tttgtttttt ctgtattttt tatttgttcg
     1861 ttagatgatt ttttttcatt tttttgaact gtttttatag gttcaaaagt tgatttttca
     1921 gtgtcttgag aaatattttg aaccttaata tctttaataa cagcctttct taaagcatta
     1981 atacttgctt cacttatacc actttctttt aactcattag catatgactt gtcatctaaa
     2041 tttaaagtat ttgaactgat gatcaatctt tttaaaattt caattttagt tttttcatct
     2101 tcatgaataa cactttgtat ataaaggctt ttgagctgat ggtgaaattt tacttgcact
     2161 tcacttttag aaccgataaa atttttatca aaatttgcaa gttcattttc ataagctcca
     2221 aaaagagttg tgaaagcaaa tactaaaaat acaaaaattt tagccattat tcaccattaa
     2281 ccaatttttc cataagttct ttaacactga taagcttatc taaacgatat ccatttacac
     2341 ctgtaaagaa aagtcctgtt tcttttttgc ctgaccacgc atcaaaaagc ctatctgcta
     2401 tacaataccc tactttagtc gcctcttttc cacgtccaca aggcgctaca caattgctta
     2461 tacaattaat ctttggaccc attcttttat ctaccaaatt taaaagattg gttctaactc
     2521 cacgagcagg atagcccaca ggagatttaa taagctctat atcttcttct ttagaagcta
     2581 gcaaaacgct tttaaactct tcactcgcat cacattcaaa agttcctatg aaacgcgttc
     2641 ccatttgaac accactagcc cctaaagaaa tagcattttc tatatctttt ttatcccaaa
     2701 ttccacctgc agcaatcacg ggaaaagacc cccaattttt agcctcttct accacaggag
     2761 cgattaattt ttctagctga taatttggat ctaagcactg ctcataagta aaaccttgat
     2821 gacctccact ttttggccct tctaaaacca ctgcatcagg caagcgattg taacggcttt
     2881 gccatctttt gcaaataatt tttaaagcct ttgcagatga aatgataggc actaaagcca
     2941 catcaggaaa atctgcagta aattcaggta aatttgtagg aagtccagca cctgaaacaa
     3001 tcacattaaa accaacctca caagcatcgc gtgctattct tgcataatca ttacttgcac
     3061 ataagatatt acaccccaaa ggtgcatcgc cacaaacttt tcttgcatta ttaatcaaag
     3121 cttgcaaacc cttgcgtgag taaaaatttt cacttccata aggcttagcg tttaattctt
     3181 tacttgcata ctttctttct tcataatatc ctgttcccac agaagaaata atcccaagtc
     3241 caccatttaa agaaactgca gaagctaatc tatcccagct tatgcctagt cccattcctc
     3301 cttgaaaaat gggatatttt atagtatgtt ttcctatttg taagggttgt aaattcattc
     3361 ttttaccttt aattttgcaa attttctttt acctatttgt aagatgtatt ctccttgttc
     3421 taaatacatt tgctcgtcgc taactttttg agaatttaca cttactgcat tagcactgat
     3481 gcttcttctt gccgcagaag tagaactttc caaaccacat tcaaccaaag ccttagcaag
     3541 ccaaattttt ccttgtattt caaactcagc catatcactt ggcaaagcat tttgagaatg
     3601 aattctatca aattcagact tagcattatt agcctcttct ttggagtgaa aacgctctgt
     3661 aatctctaaa gctaaatttt ctttagcttt tttaggatgt aaattgcctt gttctatatc
     3721 tttttttatt tgcgcaattt cttctagact tttttgactt aaaagttcat aatatctaaa
     3781 catcaattca tcactaatac ttaaaatttt agcatacata tcattagctt tttctgtaac
     3841 accaatgtaa ttatttaaac tcttactcat tttgtttaca ccgtctaaac cttcgagtaa
     3901 aggcatcata atcacagctt gttcttttcc tatgttataa actctttgaa gctgtcttcc
     3961 catcaaaaga ttaaattttt gatccgttcc acccatttca atatcgcttt ttaaagccac
     4021 actatcatat ccttgaagta agggatataa aaactcacaa atcgaaatag gactttgctc
     4081 tttaaatctc ttggtaaaat cgtcacgctc aagcattcta gctacactaa aagttgaagt
     4141 aagctctact atacccgcgg ctccaagttc attaagccaa gtagaattaa acttaatctg
     4201 tgttttttct ttatccaaaa ccttaaaaac ctgcgtttca taagttttag cattgattaa
     4261 aacttgctct ttatccagct ttttacgcgt tgcacttttt ccacttggat cgccaatttg
     4321 tcctgtaaaa tctccaatca aaaactgcac aatagctcca tgtttttgca aaaaagccat
     4381 ttttgttaaa accacgctat ggcctaaatg taaatcaggc gctgtaggat caaaccctgc
     4441 ctttataaag aaattttcac ccttttcata ataattttta attaaatttt ctattctttc
     4501 ttcatcaata agctctgcac aaccacgctt aacttctgct aatatttttt ttatatccat
     4561 aataaacctt tttaaccttc tttataagca tcatttaaag atgtaaaatc taaaatttta
     4621 caacgagatt ttaacctatc cttgacacta tctggattga tattatcagg aatttccatt
     4681 gtaatctcaa aataatctac cgccgaattt aaatcacttg ataaattaat tgttaataga
     4741 tttatctgca ttttagctaa aaatgccaaa aattccgcta aaacaccttt tttattttcc
     4801 aaagaaaaaa tcaatttata agatttaggg atgttagaat cccattttat aaataccata
     4861 tcttgattat tatctatcat tttatcagct ctatcgcaaa gcttatgatg gacaatagcg
     4921 ttaccacctt taacaaaagc taaaacagca tcacctcttt ttggatggca gcaaaaatca
     4981 aaatccacat tagcgatttt atggttacaa tataaagtaa aatttcctat tttttgttct
     5041 ttaatctcat atttatcaaa ccaatatgac ttcttggcgt attttttaag accattaact
     5101 atatctttca aataagcact atctgttgct acttgtctaa tacgtctggc taaattttct
     5161 ttttctatcc aagtttcaat tctgttttta tcaactccaa aaataaaact taacatatta
     5221 atagaacttg ctagattaat ctctctgatt ttttgcttac aaaattccct tatacttgct
     5281 tttgcttttc ctgttttaac actatctatc caagaacagc gataaaattt atcattgcta
     5341 gtaaccactc gcacaatatc gccattttta agctcggtta acaaaggcac tttaatacga
     5401 tttacataag cactttttgc atgaagccct actttggtat gcacttcata agcaaaatca
     5461 agaaccgttg caccacgagg taaagtgaaa atttctccct taggagaata aactgcgaca
     5521 tcttcaacat aaagactatc tttagcatat tcataaagtt caatagcatt ataatcttct
     5581 gcattttcaa gattgtttat actttgcatt gaaatatctg taagccaatc aagacgaggc
     5641 gcaaccacac tgccatcttc tttatatttc caatgcgctg ctataccaaa ttccgcaatt
     5701 ttatgcatat caaaagttcg aatttgtgct tctataatac ttttagcatc aaaaagtgtg
     5761 gtatgtatgg tttgataacc attttgttta ggcaaggcta tataatcctt aaaacgcgaa
     5821 accaagggat taaaatgtgt atgtaaaatt cccaaagcta aataacaatc acttactttt
     5881 tcaaccaaaa ttcttacccc aagcaaatca agaacttctt caataccaat gccttttctt
     5941 tgcattttaa gataaataga atagctatgt ttaatgcgtt tttgaatttc aaaactacct
     6001 tgtctaaagc cattgctcaa aaataaaagt tcgattttgg aaataaattc atttaaacct
     6061 aattgcattt cttgattatt agagttgata taattgtcaa taagcttata ctcatctggc
     6121 ataagatatt taaaactaag atcttccaaa taatttttta tgcttgaaat accaagtcta
     6181 tgggctattg gggcatatac aactaaagtt tcttcgctga ttcttttttg cttatcttct
     6241 cttagaatat caagagtaag catattatgc agcctatcgc ataacttcac aatcaaaacc
     6301 ccaacatctt caatacttgc taaaagcata tttctgaaag tcaaggctga tttagttaaa
     6361 ctttttttag attttgatga aatgagatta tcttctctaa tttctataat tttagtaagt
     6421 cctaaaacaa gttttaaaac ctcagaacca aactgctctc taagttcttc ttcagtgcag
     6481 tttgtatctt caatcacatc atgcaataaa gcagctaaaa tattgctttt attttcactt
     6541 aaaaatccaa ccagtgttgc tactaaaata ggatgtaccg cataaggctc tccacttttt
     6601 ctaaactgcc cttcatggca aaatatacag taatctaccg ctttttcaag aatggcatca
     6661 tggccacaaa tttcgaaaag caaagcctta gcagcttcta aatctttaca attttttaca
     6721 ttatcgatta attgttcaag caataattct tcatcgattg gtttcaacta aaccctctaa
     6781 agtgatttta ttttctgcaa tttcatataa agctatatct gcaagtttat ttttattttt
     6841 atcaaagtct accaaagggg ttgctccatt tgccaattgt tccgctcttt ttgctaccac
     6901 taaagaaagg cgatatctat cattacccat tttttccaaa gcttttgccg ctacttcttc
     6961 tattctttta tccataattt tctccttaat tatttttaac gattgaacaa aggctagtat
     7021 caccttgtat gattttaagc aaattaccct cttcaaacat attacaaacc acaataggaa
     7081 gtttgttatc tttagctaaa gctatagctg tatcatccat cactttaata ttatcttgca
     7141 tagcctcatc ataactcaaa gtatttaaaa atactgcatc atcaaattgt tttggatctt
     7201 tatcataaac tccattaact tttgtagctt ttattaccat atctgcatca atttccacag
     7261 ctcttaaaat agctgttgta tccgtagtaa aataagggtt tccagtacct gcagcaaaaa
     7321 ccacaacacg acccttttct aagtgtcttt gcgctcttct cataatataa gtttcacaaa
     7381 atgcttccat ctgaatggcg ctttgaaccc taacttcaag tccagagctt tccaaagctt
     7441 cttgtatagc aatagcattg ataaccgtag caagcatccc catatgatct ccacttgtcc
     7501 ttttaatcaa tccgccctta gcagcactta ctccgcgaat aatattacca ccgcctataa
     7561 ctatgcctac ttctatttga ttttttataa gttctttaat ctctgaagct atgaatttta
     7621 aaatagaatt ttctatacca aagccatttt cacctgctaa agcctctcct gaaaatttta
     7681 ctaaaactct ttttctctct tgcattattt ctccttattt aacttgaaat tatattttaa
     7741 attccattaa atttagctaa tttaagctaa tgagttccaa aggattgata tgaaaatttt
     7801 tttgagttac ttcaaaagta agatcatttt ttattctacc cactacggca ccttttttaa
     7861 tattcttacc aactttaata ttaggagcaa tcttatctaa atgtgcgtat attgtatgta
     7921 tgccattatc atgttcaaca ataacaactc gagctagcat actagtatct ttagcaaaaa
     7981 ctatttttcc atctagcaca tttttaacaa ctgcatcgct tttattgctt cttaaaacta
     8041 cattctcgtt aaaaatttta agattgtaaa caggatcaac ataatttcca aatttttgct
     8101 tcacagtaaa agaatccaat ggagctatgg ttttttttcc tgtgtaacgc ttgactgaac
     8161 ttccttgata gcttgaacct aattgtctta ttttttgatt attttttact attttagtat
     8221 catttttgtt tgaatttgca tcttctttat cattaataat ttttaattga tttaatgttt
     8281 ttctaagctc ttcttgctga gcttgtaaat catcgagttt ttttgcatat atagctcgat
     8341 ctgttttttg tttattaatt tcgctaattt gtttttgttt taaactttga agcttggcta
     8401 attgagcgtt gtaatcctta agactttcat tgattttctt aatctgagct tgtttatcat
     8461 caataagcct gcttactccc tcataatctt tagaaatttt aaaaatttct tcatttaaaa
     8521 ctttgtttaa acttcctaaa atttcaaaag ccataaaact ttcttcactt tcaatatagc
     8581 cttgagggat aggtaaatca taagcaaaat ctttagccat taaagatata agcttacctt
     8641 ccatatttga tttactttta agcaaatctt cattttggct tgtaagggtg tttaactctt
     8701 gattttgagc cttagcactt gcttcaagct tagaagtttg tgaatttaag ctttcaattt
     8761 gcaaacttag atctttcaaa cttttttcac catttaaaat atcgctagcc aaatcttcaa
     8821 gttttttatt taactgttct tgtatgcgtt tattttcttc taaacttttt gttttttcat
     8881 ttatagcgtt tgctaaactt atatcaacaa acaaaaaaaa acaaaaaaag ataagaatat
     8941 tttttctcat cttttaacct taaacataac cgtatttaca cacaacaagc aaataaacaa
     9001 agtagctaaa aaaattaaag tcaaatgtaa aataaaatta ataggtggaa aaataatatc
     9061 tacagccttt aaactttctt ggataataga aagatcaaaa atttgggtaa aaaaggcaag
     9121 taaaataaca aaagcaataa aacaatcaac cacaaccacc ttataaagca taaaagatct
     9181 aaaccaaaac ggagctccaa ataaacacat aatttcaata cgatcggtat gttcataaag
     9241 ccaaattctc atctgtttta aaaacaaaac aaaggcaagt aaaataatga taaacaaaaa
     9301 taaccaaaaa acaaatttca tcaaaataag caaagaatat atcttatcat gggttttgga
     9361 aaaagtttca accttactaa cacctacaat atttaaaagt tgatttttaa tcgaatttag
     9421 ttcattttga tcgggtaaag aatttaattt taaagtataa aattttggca gagaatcttt
     9481 taaaactttc aaattctttt cagaaacatc atttttcaaa cgatcaatta aatccttagg
     9541 atctaaagat tcaagtccag caaaaaatgg tacttttgtt tttactacat tctgatcaag
     9601 ttcagttttg ctgacaacta taatattata atctttatta acaagttctt cataatgctt
     9661 caaagttgca tttgtaatca aaataaattc aaaagcaaac atcataaaaa gtaaaggtaa
     9721 aattaaagat aaatgtgttt taaaaaattt cattcatttt tccattttct atattaaaac
     9781 gacgataatc cactcttaaa ttactaggaa ttctatgtgt taccactata acacaagttc
     9841 ctaaaagctc tctagcagac tttaaaagag tccatataat atcagaagaa tactcgtcca
     9901 aatttcccgt tggctcatcg caaagcaaaa gctttggatt atgagctaaa gccctagcca
     9961 tagcgacgcg ttgttgctca ccaccgctaa gttgattagg caatttatct gctttaaaag
    10021 ttaaatttac atgctttaaa agcttagtag cttgatcatg gcatactttt ttgctataac
    10081 ctttaatcat taaaggcaac ataacatttt tttcaacact atattcttgt acaagtttat
    10141 aatcttgaaa aataatccct attctttgac gtaattttaa aagttctaaa tttccaattt
    10201 tattcatcaa agatccacat acttcaagtt taccagaaat aggttctaaa tctccataaa
    10261 aagactttaa aagcgtactc ttaccactcc cacttttacc cgtaataaaa acaaaatcat
    10321 catccttaaa agcaaaactc gcttctttaa taactagttc atcataacct aaagtaagtt
    10381 tat
//
LOCUS       DARBBO010000058        10200 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.058, whole genome shotgun sequence.
ACCESSION   DARBBO010000058 DARBBO010000000
VERSION     DARBBO010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10200
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.058"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..150
                     /locus_tag="SB854_001169"
     CDS             <1..150
                     /locus_tag="SB854_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG0957158.1"
                     /translation="FVGFFMNKKQIYKIFSKFISRKIFLIWLFFIRFISPIAIILVMC
                     YQIFV"
     gene            182..1981
                     /locus_tag="SB854_001170"
     CDS             182..1981
                     /locus_tag="SB854_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin attachment protein"
                     /protein_id="HEG0957159.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFTMMDRFRAIVGKDANLQTLARGVNTVTLDTGSSELID
                     LHAKLFAKHGTTTIRNFDALNDINNLKFSGECIAKHGLKHEIAITLMDLPPNCKGAHD
                     VPFYEKILKEILAAEIPFHSICFKDASGTSNPNKIYETIKMARKILPQDMHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGLEEEKI
                     LKYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGSWKKIAEGYGKMVLGYFGKTPVAPD
                     ANIIELASKQLNLEPTTELAINIADKDESKSIAYTKTLLEKEGIETSEENIFVAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSADENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEVLAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIILELCIKIGDTVNEGEVLAIYKN"
     gene            1994..3568
                     /gene="pckA"
                     /locus_tag="SB854_001171"
     CDS             1994..3568
                     /gene="pckA"
                     /locus_tag="SB854_001171"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEG0957160.1"
                     /translation="MKKFDKLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKVNQPITKELFDKLLTKAKQELSGKKIYVQ
                     DVFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     HEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     ITKCEFENFEVFDLAIPKALEGVESVLLNPINTWLDKNAYIATRDKLAHMFIQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            3578..4960
                     /gene="argH"
                     /locus_tag="SB854_001172"
     CDS             3578..4960
                     /gene="argH"
                     /locus_tag="SB854_001172"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEG0957161.1"
                     /translation="MKNEMWSGRFSGASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVRSEIEQGKFIFDIKDEDIHMAVEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEHAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDIKRLQNSLELADFSPLGSCACAGTSYATNRELSAKIL
                     GFKDIMPNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHLLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEAQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(4982..6085)
                     /gene="ychF"
                     /locus_tag="SB854_001173"
     CDS             complement(4982..6085)
                     /gene="ychF"
                     /locus_tag="SB854_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEG0957162.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDVEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(6082..7533)
                     /locus_tag="SB854_001174"
     CDS             complement(6082..7533)
                     /locus_tag="SB854_001174"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HEG0957163.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKIFNKEKDFFKLNNYKG
                     EGALLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLPSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLEKFIISNEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNIICKIYDEKFLAKEKMNAFLAVNHA
                     SVHPPRLIHLSYKAKNAKKRVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAAMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDVLISREGVSIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVVGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(7530..8126)
                     /locus_tag="SB854_001175"
     CDS             complement(7530..8126)
                     /locus_tag="SB854_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG0957164.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKCYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(8145..8693)
                     /gene="apt"
                     /locus_tag="SB854_001176"
     CDS             complement(8145..8693)
                     /gene="apt"
                     /locus_tag="SB854_001176"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEG0957165.1"
                     /translation="MIKLTQEEQKYLLDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLKHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLIN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(8690..9022)
                     /locus_tag="SB854_001177"
     CDS             complement(8690..9022)
                     /locus_tag="SB854_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957166.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(9022..9459)
                     /gene="rpiB"
                     /locus_tag="SB854_001178"
     CDS             complement(9022..9459)
                     /gene="rpiB"
                     /locus_tag="SB854_001178"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEG0957167.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKINKRSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            9625..10179
                     /locus_tag="SB854_001179"
     CDS             9625..10179
                     /locus_tag="SB854_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheB"
                     /protein_id="HEG0957168.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDVKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
BASE COUNT         3444 a         1492 c         1721 g         3543 t
ORIGIN      
        1 tttgtaggtt tttttatgaa taaaaaacaa atttataaaa ttttttctaa atttataagt
       61 cgaaaaattt tcttaatttg gttgtttttt attcgtttta tatcgcctat agcaataatt
      121 ttggtaatgt gttatcaaat ttttgtataa taatgaaaaa atattttttt aaggaaaaat
      181 aatggctaaa aaattcatcg atgtaatgga tacaagcttt agggacggtt ttcagtctgt
      241 ttatggagct agggttttaa tggatgattt ttttcctgca gtagaagcag caaaagaagc
      301 gggtattact cattttgaat ttggtggtgg tgctagattt caaagcttgt atttttatct
      361 taatgaagat gcttttacca tgatggatag atttagggct attgtaggaa aagatgctaa
      421 tcttcaaact ttagcaagag gggttaatac tgttacttta gatactggaa gtagtgagct
      481 tattgatttg catgcaaaac tttttgcaaa acacggtacc acaacgataa gaaattttga
      541 tgctcttaat gatataaata atttaaaatt tagtggtgaa tgtatagcaa aacatggatt
      601 aaaacatgaa atcgctatta ccttaatgga tctaccgcca aattgcaaag gtgctcatga
      661 tgtgcctttt tatgaaaaaa ttttgaaaga aattttagca gcagaaattc cttttcacag
      721 catttgtttt aaagatgcaa gtggaacttc aaatccaaat aaaatttatg aaaccattaa
      781 aatggcaaga aaaattttac ctcaagatat gcatattaga cttcatacgc atgaaactgc
      841 aggggtgagt atagcctgct atcttgcagc acttgaagca ggtgttgatg gtatcgattt
      901 ggctgcagct cctgtaagtg gtggaacttc tcagcctgat attttaacca tgatgcatgc
      961 cttaaaaggt aaagattatg atttaggtgg acttgaagaa gaaaaaattc taaaatacga
     1021 agaagtttta aaagattgtt taaaagagta ttttttaccc cctgaagcta ctatggtaaa
     1081 tccacttatt cctttttctc ctatgccagg aggagcttta acggcaaata cacaaatgat
     1141 gagggataat aatattttag ataaatttcc acaggtcatt catgctatga gagaagttgt
     1201 agaaaaaggt ggatttggta cttcggttac tccagtttct caattttatt ttcaacaagc
     1261 atttaataat gttatgtttg ggtcttggaa aaaaatcgca gaaggttatg gaaaaatggt
     1321 gcttggttat tttggaaaaa ctccagttgc acccgatgca aacattattg agcttgcttc
     1381 aaaacaactt aatttagaac ctactacaga gcttgctata aatatagctg ataaagatga
     1441 gagtaaaagt atagcttata ccaaaacctt gcttgaaaaa gagggtatag aaacgagtga
     1501 agaaaatata tttgttgcag cagcttgcaa agaaaaaggt atagcatttt taaaaggaga
     1561 ggcaaaggta aatatacgca aattagccag tatgccaaaa cctatgagtg cagatgaaaa
     1621 caaatttacc gtagctgtaa atggtaataa atatcatgta gaagtaagct atggctttga
     1681 taaagatgtt aatgttaaaa gtgtgaaaaa agtagaagaa aataaaaata ttatttcttc
     1741 aaattcaaca agttctgtag atgctgaaaa tgaagtttta gcaggtattt caggtaatgt
     1801 ctttaaaatt tatgttaacg aaggcgaaga agtaaaatca ggtcaagcta tcatggtttt
     1861 agaagcaatg aagatggaga ttgaggttaa tgccccaaaa gatggaatta ttttagagct
     1921 ttgtattaaa ataggtgata ctgttaatga aggcgaagta ttagctattt acaagaatta
     1981 aagtgaggga aaaatgaaaa aatttgataa gttaggtttg gataatataa aggaaatttt
     2041 tcataattta agttatgatg aattaaatgc tcatgaaaaa gcaaataatg aaggtttaag
     2101 cacggataat gatacttttt gtgtagatac agggattttt acaggtagaa gtcctaaaga
     2161 taaatatttt gtaaaacaag atccatctag taaatatata gcttggggaa aggtaaatca
     2221 gcctattaca aaagaattat ttgataaact tttaactaaa gcaaagcaag aattaagcgg
     2281 aaagaaaatt tatgttcaag atgttttttg cggtgcttct ttgcaaagtc gcaaagcagt
     2341 aagatttgtt actgaaattg catggcaagc gcattttgtt aaaaatatgt ttattcgccc
     2401 aagtcaagag gaacttgaga attttaaagc agattttatt gtttataatg cttgcaaatg
     2461 catcaatgaa gattacaaac aagatggttt aaattcagag gtttttgtga tctttaatgt
     2521 tgaagaaaat atagcggtta ttggtggaac ttggtatggt ggagaaatga aaaaaggtat
     2581 tttttctatg atgaattatt ggttaccact agaaaataaa ctttctatgc attgtagtgc
     2641 aaatgtcgga gaaaaagacg atgtggcact tttctttgga cttagcggta caggaaaaac
     2701 tacgctttca accgatccaa aaagaagact cataggtgat gatgagcatg gctgggatga
     2761 tgaaggtgtg tttaattttg agggcggttg ctatgcaaaa acaatcaatc ttgatcctga
     2821 acatgagcct gaaatttatg gagctattaa aagaaatgca cttttagaaa atgtagtttt
     2881 aagagctgat aagagtgttg attatgctga tgcctcaaaa acagaaaaca cgagagtttc
     2941 ttatcctata gagcatattg aaaatcatga gcctagtcta aaagcagggc atccaaaaaa
     3001 tattatattt ttaagtgcag atgcttttgg aattttaccc ccggtaagca aactaagcaa
     3061 agagcaggct atgtattatt ttttaagtgg ctatacagca aaagtagctg gaactgagcg
     3121 cggtataaca gagcctcaag caactttttc agcttgtttt ggagaacctt ttatgccttt
     3181 acatccaacg gtttatgcga gattgcttgg tgaaaagatt gaaaaacatg aagttaatgt
     3241 ttatcttgtt aatacgggtt ggagtggcgg aagctacggt gtgggtaaaa gaatgagcat
     3301 taaggctact agggcttgca ttaatgccat tctagatgga agtattacaa aatgcgaatt
     3361 tgaaaatttt gaagtgtttg atttagctat tccaaaagct ttagaaggtg tagaaagtgt
     3421 acttttaaat cctataaata cttggttaga taaaaatgct tatattgcaa caagagataa
     3481 attagcacat atgtttatac aaaattttaa acgttatgaa gatgtcaaag aaggcattga
     3541 atttagcaaa tttggaccaa aaatttaagg catttaaatg aaaaatgaaa tgtggtcagg
     3601 acgttttagt ggtgcaagtg atgagctttt aaaagaattt aatgcaagtt taaatgtaga
     3661 taaaactttg ttcaatgaag atatacaagg ttctatagca cacgctacaa tgcttgaaag
     3721 ttgtggtatt ttaaaaaaag aagaattaga tgctattata aaaggtttag agcaggttag
     3781 aagtgaaata gagcaaggta aatttatttt tgatattaaa gatgaagata ttcatatggc
     3841 tgtagaaaag cgtttaagcg agattatagg tagtgaaatt ggcggaagac tacatactgc
     3901 aagaagtaga aatgaccaag tggctactga ttttaaactt tttgtaaaaa aatctcatat
     3961 tgaacttata aagcttttaa aagaattgat tcaaaccatg ctcgaacatg ctaaagtgca
     4021 taaaaaaact attatgccaa gttttacaca tttacagcac gctcagcctg tgagtttttc
     4081 tttttatatt ttagcttatg cttttatgtt aatgcgagat attaagcgtt tgcaaaatag
     4141 cctagaactt gcagactttt caccacttgg atcttgtgca tgtgcaggaa caagctatgc
     4201 taccaatcgt gagttgagtg ctaaaatttt aggatttaaa gatattatgc caaatgctat
     4261 ggatggagtg agtgataggg attttgctct tgatttgctt tatgatatag cagttatttt
     4321 tacacacact tcaagacttt gtgaggaaat gattttattt tcaagctcag aattttcttt
     4381 tataaccata agtgatagtt tttcaacggg aagttctatt atgcctcaga aaaaaaatcc
     4441 tgatgtttgt gagcttatac gtggaaaaac agggcgtgtt tatggaaatt tgatttctct
     4501 tttaactata atgaaagctt tacctttagc ctataataaa gatatgcaag aagataaaga
     4561 agggattttt gatagtgtaa aaaccgctaa agatagctta atcatcttaa atgcaatgct
     4621 aaaagaaata caaattaata aagaaaatat gcttaatgct tgtaaaaaag gtcatttatt
     4681 ggctaccgat ttggcagatt atttggtgcg tgaaaaaaat attcctttta gaaaagcaca
     4741 ttttatagtg ggaaatgttg ttgcacaagc tgaagcacaa ggcattgata taagtgaaat
     4801 taaagatctt tcaaaaatag atcctgtatt tgatgaaaaa gctatggaac ttttaaattt
     4861 tgaattttct ttaaattcta agcaaagtga aggctcaagt tctattgcaa gcgtagaaaa
     4921 gcaaattcaa attttggaag gttttattca aaatttataa atattgttta ggctattttg
     4981 cctaaacatt gaatctaaaa tgcattacat cgccatctaa aacgatatag tcttttcctt
     5041 caaggcgtag ctttcctgct tctttggcgc cattttcgcc tttgtattgg atataatctt
     5101 cataggaaat aacttcagct tttataaagc ctttttcaaa gtcattgtga attacacttg
     5161 ctgcttttgg tgctttccag ccttttttga ttgtccaaga acgcacttca actacaccag
     5221 cggtaaaata actgatcagt ccaagcttag caaaagcagt gcgtatgatt tgatcaagac
     5281 cgctttcgtt aactcctaga gaacttaaaa attcatgact ttcttcatcg cttaatccta
     5341 ctaattcttc ttcgattttt gcacaaagct tgataacttc atgatcattt tttttagcat
     5401 attcttttaa agcttttaca taatcattat cttcactaat accattttca tcaacatttg
     5461 caccataaat cacttcttta gcagaaagca gtcttaattc tttgattaag gcttgataaa
     5521 tttcactttc tttttcaggg taagaacttg cagctaagcc tttgtttaaa tgatcaagta
     5581 aggaatttgc aagttcgaga ctttctttag cacccttttg attggctttg gcttctttgg
     5641 tgagtttttc tattttttta ctcagttgtt caatatctgc taaaataagc tctgtattga
     5701 taatttctac atcacgtaaa ggatcaactc caccttcaac atgggtaata ttttcttcat
     5761 caaaacaacg tactatatgc aaaataacct cagtttcacg tatatttgaa agaaatttat
     5821 ttcccaagcc ttcgccttta cttgcgcctt taacaagtcc agcgatatct acaaattcta
     5881 ttaaagaatg cataattctt tcaggtttta ctattttagc aagttcatta agtcttaaat
     5941 caggaacttc aaccatggct ttattaggct ctatggtgca gaaaggatag tttgcacttt
     6001 gggcattttg tgctttagtt aaagcattaa aagttgttga tttgccaaca tttggaagtc
     6061 ctactatacc tacgcttaaa ctcatttagc tttccttaaa atttgaatta aataattaac
     6121 acacattcta actccagctc cacctgcgcc aaaactagaa tatccccaag atttttctgt
     6181 ataagcaggt cctgctatat caagatgtag ccatttatct ttatattctt tacgaataaa
     6241 tttatctaaa aataaccctg cggtaattgc acctccgtag cgactagagg cagtattact
     6301 aacatcggca atatttgatt ttataagttc tcttaagtga gggttgaaat gtaagattgt
     6361 ggtatattct ccgctttttt tagagcttag ataaaaatca ttttgcaatt cctcattatt
     6421 tcccataata gcgcttgtaa attctccaag tcctacaaca caagctccag taagagttgc
     6481 catatcgata agtaaatcag gttttaaatc ctgtgcaaaa gaaagacaat cagctaaaac
     6541 caagcgtcct tctgcatctg tatttcttac ttctatgctt acaccttcac gactgattaa
     6601 cacatcatca ggcttataag cattgccgcc tatcatattt tcagttgcgc ccaaaatgca
     6661 atgcacttct aaatctaaag caagttcagc tacggctttt atgattccca ttgctgctgc
     6721 tgcaccgctt ttatcagctt tcattgtaag cataaaatca gctggtttta agcttaatcc
     6781 accgctatcg taagttaagc cttttccaac aaatacaaca cgtttttttg catttttggc
     6841 tttatagctt agatgaatga ggcgtggtgg gtgtaccgag gcatgattta ccgctaaaaa
     6901 ggcattcatt ttttctttgg ctaaaaattt ttcatcataa attttacaaa taatgttttt
     6961 attttcttta gctaaatttt gcgcatcttc tgccattttt aaaggggtgt aaatttcagg
     7021 aatttcattg actatatttt tagtaaaatt tgtagcattg gctaaaattt ctccacgctc
     7081 taaacctatc ttagcttcat ctttattaaa tttcttacca tttaattctt cgtttgaaat
     7141 aataaatttt tccaaagtac ttgttttttt ctcgctttta tatttgtcaa atttataagc
     7201 tccaaaaagt acgccttcaa ctaaagatgc aaaacttcta actacacaat ctcctattat
     7261 gctaggaagt tttacgcttt taatattaag tttctcaaga gttttatatg ctgtgcaaag
     7321 acttaatctt atatcctcat aagcaagact tttaagctct aaataaagct ttttattgtt
     7381 taagtctaat aatgcacctt cgcctttgta attattaagt ttaaaaaaat ctttttcttt
     7441 gttaaaaatt tttaaatttt tatcctgtat aaaaacaagt tcaaagtctg cttttatagc
     7501 atctagtttt ttatcgttta attcaaattt catgattttt tccttttatc tttaagtata
     7561 gctttttcca tttgtttaaa accaaataat aaaagggata aaaaagctat aataataatg
     7621 gctgcataat accaatgttc ttcagcccaa gtcaccatct tccaaatttg ttctccaaaa
     7681 taccaagcta aaagtatagt gattgatgcc caaacccaag cactaaaaag attgataata
     7741 gcaaattttt ttgcactata acgcgtgatt cctatactca taggtataat ggttctaaag
     7801 ccatacatat agcgttgtat aaaaataata ggccaaccaa aacgttgtaa aagtaggtgt
     7861 gctactgcaa atttacgcct ttgagttttt aatttttttt gtatgtagca tttattatat
     7921 cttcctatat agaagtaaat ttgatcgcct acaaaaccgc caagacctgc tataaatata
     7981 acaaagccta aatttacatg tccttgatgg gcaaaaatac cagctaaaat taaagctaac
     8041 tctccttcta aaatgcacca taaaaaaata ataatataag ctagatcttt gtattggtaa
     8101 agtaaatttt ttaaaaattc ttccatttgt acctttctat agttttaaat ttctaaaaca
     8161 ctataaactg aagtaagttt ttcaagttta tttgctccat ttaaatcttt aagatttatt
     8221 aaaaaacaag cttcaacaca ttttgctcca gctttttgaa tgagttcata tgaagctata
     8281 gctgttccgc cagttgctat taaatcatct acaagtaaaa ctcttgcatt ttgaatattt
     8341 ttaaatgcat ctttatgaag ttctacttta tcgctgccat attcaagatc gtattcgcag
     8401 ctaaaggttt caaaagggag ttttccaggt tttctaatag gcacaaaagg aagattaagt
     8461 tttgcacaaa tcatagatgc aaagataaat cctctgcttt ctgttcctgc tatgaagtct
     8521 agattgtaat ctttgtagcg ttcttttaaa tgtttaagta gaaaatttaa agcctctttg
     8581 ttatttagta gagtggtaat atctctaaaa ataattcctt tttttggaaa atcaggaata
     8641 atcctaatgc tatcaagcag gtatttttgt tcttcttgtg ttagttttat cataataatg
     8701 cctcaatttt tgcttctaat tctttaattc tttgtcttag tttgtcattt tccaagcgat
     8761 attgagaatt tctggttctt aaagatgtaa ggtctgcttt gattttatta agttcttctg
     8821 tgagtatatc tatatttcca agacttcttt gaagttgaat ttgtagtttt ctaatgacaa
     8881 tctcagtatc atcaagattg tttttgataa aatcttttga tgttttttct ttattaagta
     8941 gagttttata gtaaaacaac attacaataa gatagatagt tgcacaaatc aatatagtta
     9001 aaacaagcca gtttgtaaac attatatttt tacctcaatt ttttgaattc tttgcatatg
     9061 tctcccttct tcaaaaggag tttgaatgaa tttttctata atatctatag ctaattcaac
     9121 tccaattaat cttccgccta atgccaaaac attggcatca ttatgccttc ttgcaagttc
     9181 tgcacttaag ctttcgtggc ataatgcaca acgaatgttt ttatgacgat ttgctgcaat
     9241 agaaattcca attccacttc cacaaataag aatgccaaag ctccgtttgt ttattttttc
     9301 ggcaagtaaa tgcgcataat caggataatc gcagcttgcg caagtgtttg ttcctaaatc
     9361 gttaaaaatt atattttttt cttttaaaaa tacgcaaatt ttttctttta attcaaaacc
     9421 agcatgatca ctagcaatat aaattttttc cctaagcatt ggtttcctaa ttactatata
     9481 aaataagata aaaacctaat cttatcatat taaatcataa aaacagcttt tctttgtttt
     9541 aaaaataagc tttatttttc tttatatatg ttagaatcat gtgacaagaa aaataaaatt
     9601 tcaataaatt aagaggagaa gaaagtgaag ctcatactca taggatcttc aacaggtggt
     9661 cctaatcagc ttaaatttct tttaaaggat attgatgtaa aaaatacttg tgtagttata
     9721 gctcagcaca tgagtgccag ttttattcca tcttttgtgg ggcaatttaa taaagaagct
     9781 tttagtgaag tgtgcttatt gaacgataaa gagatattaa gcaataaaat ttatatttgc
     9841 cctaaaaata ctattttatc tggaaattta aatattgtag ccgcttggca agatgtggct
     9901 tcaagcttta aaccgagtgt ggatttactt tttcattccg ctgtttcttt ggcaaaaaca
     9961 aataaaatac ttgctattat tttaacgggc atgggagatg atggcgcaaa aggtttattt
    10021 gagctttata aaacaggagt tagatgttta tgtgagaatg aagcagatag cgtcgtttat
    10081 ggtatgccaa aaagagcaaa agatatgaat ccgcatttaa aacctatgag cttaaaagaa
    10141 attaaaaaag aaattgtaaa ttttattgat caggattaat aaaaggaaaa ttgcatggaa
//
LOCUS       DARBBO010000059         9889 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.059, whole genome shotgun sequence.
ACCESSION   DARBBO010000059 DARBBO010000000
VERSION     DARBBO010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9889)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9889)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9889
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.059"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            20..292
                     /gene="yajC"
                     /locus_tag="SB854_001180"
     CDS             20..292
                     /gene="yajC"
                     /locus_tag="SB854_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEG0957169.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            285..1865
                     /gene="secD"
                     /locus_tag="SB854_001181"
     CDS             285..1865
                     /gene="secD"
                     /locus_tag="SB854_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HEG0957170.1"
                     /translation="MRNSKINYRLIIFMAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSEEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDTRVGISDKNNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKNNNTRFWFGYRRR"
     gene            1865..2836
                     /gene="secF"
                     /locus_tag="SB854_001182"
     CDS             1865..2836
                     /gene="secF"
                     /locus_tag="SB854_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HEG0957171.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILEKQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGNKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            2846..5275
                     /locus_tag="SB854_001183"
     CDS             2846..5275
                     /locus_tag="SB854_001183"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEG0957172.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMLATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEKLKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDILNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYTQKSGKLIHSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQICGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDKKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILVFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            5272..5784
                     /locus_tag="SB854_001184"
     CDS             5272..5784
                     /locus_tag="SB854_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957173.1"
                     /translation="MKKILIFCIGLFLGACGYVPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            5768..7165
                     /locus_tag="SB854_001185"
     CDS             5768..7165
                     /locus_tag="SB854_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957174.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYGSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDEN
                     FNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKS
                     YLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDE
                     LIKQIAAVNEQYNES"
     gene            7131..8315
                     /locus_tag="SB854_001186"
     CDS             7131..8315
                     /locus_tag="SB854_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEG0957175.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSVFERRMNI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCEKFVLPCFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGIQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
     gene            8302..9204
                     /locus_tag="SB854_001187"
     CDS             8302..9204
                     /locus_tag="SB854_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEG0957176.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYTIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEVENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            9141..9536
                     /locus_tag="SB854_001188"
     CDS             9141..9536
                     /locus_tag="SB854_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HEG0957177.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            9536..>9889
                     /locus_tag="SB854_001189"
     CDS             9536..>9889
                     /locus_tag="SB854_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEG0957178.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEIS"
BASE COUNT         3607 a         1126 c         1850 g         3306 t
ORIGIN      
        1 tttggaataa aggaaaaata tggcagaaaa ttcaatttta acttcattgt tacctcttgt
       61 agtgttattt gcaatttttt atttcttggt aattagacca caacaaaaac aagcaaaagc
      121 acataaacaa atgcttgagt ctttgcaaaa aggagataaa atcatcacta atggcggact
      181 tatttgtgaa gtcgtaaaac cagaggagga ttttatcaaa gttaagctta atgaagacaa
      241 tgttactgca aaaatttcaa gagaatttat agcaaagaaa attgatgcgt aattctaaaa
      301 tcaattatcg cttgattatt tttatggcgg tatttatttt tggagtggct ttttcactcc
      361 cttctttttt gcagtcagaa cgtggtgcga agattaattt agggcttgat ttgcaaggtg
      421 ggctttatat gctcttaggt gtagataatg aagaagctgt aaaatctaaa ataaaatcaa
      481 ttgcatcttc attgagttat tcttttaata aagaaaatat tttaaatgat ggcttaaata
      541 cccatgatga tattttagaa tttactttgc ttgataatgc agatattgca aaagttgaaa
      601 atttgcttaa agaaataaaa ggaattaata tacaaagtga aaatatgcac tataaaattt
      661 cttttacctc agaagaagta aaaaatatag aaaattttgc acttttgcaa gcagttgaaa
      721 ccataagaaa taggcttgat caatttggtt tagcagagcc aacagttgct aaacaaggtg
      781 atgataagat tttggttgaa cttgcaggga ttaaaaccaa agaagatgaa ctaagagcaa
      841 aagaacgcat cacaaaagca gcacatttgc aacttatgga agttgatgat tctaaaatgg
      901 gtcaagcttc tacaatgagc gatgctgagg ctgcgagtta tggactgatt ttagtgcctg
      961 attctagaaa tccaaattta aaatatacct taaaaagtat acctatttta gatggatcta
     1021 tgcttactga tactagagta gggattagtg ataagaataa ttatcctgtg attaatttta
     1081 ctttaaatgc cgagggttct aaaaaatttg ctgattatac aggagcaaat gttggaaagc
     1141 gtcttgctat tgtacttgat aataaagtat attctgctcc atctatcaat gaacgcatag
     1201 gtggaggtag tgggcaaatc agtggagctt ttacccaaga agaagcgcgt gatgtggcgg
     1261 tagctttaag aagtggagct ttgcttgcgc ctgtaaaatt acttgaacaa agaagcatag
     1321 gaccatcttt aggtgctgat agtattaaaa tgagtatgat agccttaatc ggtgcatcgg
     1381 tttttattgt agtatttatg atgatgtatt acggtgtggc aggaattttt gcaaatattg
     1441 caatgctagt taatgttttg gtagtagttg ccgttatggc tatgtttgga gcaactttaa
     1501 ctttaccagg gatggcagga cttgttttaa ctgtgggtat ggcagtagat gcaaatgtga
     1561 ttatcaatga gcgtatacga gaactcttgc gagatggagt aaatataaga gttagtatag
     1621 aacaaggtta taaaaatgct atgagtgcga ttatagattc aaatatcact tctttagtta
     1681 cttcggtagc gctttatgcc tatggaacag gagcagttaa aggttttgct gtgactttgg
     1741 gaattggtat cgttgtttct atgattacag ctattttagg aactcatgga atgtttgatt
     1801 attttatgca acgcatagaa aaaaataata atacaagatt ttggtttggt tataggagaa
     1861 gataatgcag ttttttagcg aaaagaaaat ttatgatttt atgagaatgc gttttgctgc
     1921 tatttccctt tcttttattt tgttttttgg ttctatttat ttactttggg ataggggttt
     1981 gcaatatggc attgatttta gcggaggaac tttagttcag cttaaatatg aaaatgcagc
     2041 tcctataacg caaattcgag aaattttaga aaaacaagga acttttcaaa atttatctgt
     2101 aactgaattt ggaagtaatg aagaagtaac catacgcttt ttaggaagta atgataatgt
     2161 aagcaatgat ataggcgagc atataagcac tcttttaaag gatacgggaa aatttgaagt
     2221 gcgtcgtgct gatgtggtag gtccaaaagt aggtgatgaa cttagaaata aaggacttat
     2281 ggctatagct gtatctttga tagcaatttt aatttatata gcgttgcgtt ttgagtggcg
     2341 ttttgctctt gcggctataa tcagtgaaat tcatgatgtt gtgattactt taggggcaat
     2401 ttctttattt aaaattgatg tcaatttaga tactttggct gctgttttaa ctgtgcttgg
     2461 atactctttg aatgatacaa ttattatttt tgatagaatc agagaaggta ataaaacaag
     2521 taaaaaaacc gaacttgcac ctattattaa tgaaagtgtt tcagcaactt tatcaagaac
     2581 ggttttaact tcagggttga ctttagcaac cgttgtgata ctttatttct ttggcgggga
     2641 aatgatacaa ggattttctt tggctttaat tgtaggtatt atagcgggaa ctttaagctc
     2701 tatctttgtt gcaagtccga cattattatg gtttaaattt agtgtgcttg agtttagaaa
     2761 taaagaaatt gaaaaagcaa aaagaaaaca agataaagaa cgcaatcgtg caatgtatga
     2821 aaaaggaaca gtgtaaggag aatttatggc ttatgaagca agtttaatag aaaaaaaatg
     2881 gcaaaaaatt tgggatgaaa atgaatattt tgagccaaaa gatgatttaa atttgcctaa
     2941 aaaatatatt ttatcgatgt tcccttatcc tagcggacga attcacatgg ggcatgtaag
     3001 aaattatact ataggtgatg ctttagcaag atattatcgc aagataggtt ttaatgtttt
     3061 acatcctata ggttttgata gttttggtat gcctgctgaa aatgcagcta ttaaacataa
     3121 aattcatcct aagtcatgga cttatgaaaa tatagcttat atgaaaaaag aacttttttc
     3181 tttaggtttt tctttttcta aaaaaagaat gcttgctact tcagatccac tttatacaaa
     3241 atttgagcaa gaatttttta ttaagatgtt tgaaaaaggt ttgatttaca ctaaagaagc
     3301 aaatgtaaat tggtgtgaac aagatcaaac ggttttggct aatgagcaag ttgaagacgg
     3361 aaaatgttgg cgttgtggtc atgaagtagt gcagaaaaaa atgccaggtt attatgtaaa
     3421 aatcactgct tatgctgagg aacttttaaa agatttagaa aaattaaaag ataaatggcc
     3481 taatcaagtt ttaactatgc aagaaaattg gattggtaaa agcgaaggtt tggaattttc
     3541 tttaaattta gacgaagaaa gcaagcaaaa aaccaaagaa agttctttag aagtttttac
     3601 tacaagagca gatacaattt atggagtttc gtatatcgct ttagctccag aacataagat
     3661 tgttcaaaat ttgctttcac aaaatttatt aaatcaagat atattaaata aaatcaaagt
     3721 tattcaaaat caaagcccaa gagaaagaca aagttctgaa aaagaaggtt attttttagg
     3781 aatttatgcc attcatcctt taagcggaga aaaaattcct ttatgggtgg ctaattttgt
     3841 cttggctgat tatggtagcg gagcggttat ggctgttcca gctcatgatg aaagagattt
     3901 tgaatttgca acaaaatata atcttgctat caaacaagtt attcaaactc aagaaaattt
     3961 accttatacg caaaaatcag gaaagttaat ccatagtcaa gaatttgata atcttgattg
     4021 taatgaggca agattaaaaa ttatttctca gtttgaagct aaaaatatag gaaaaagggt
     4081 tgtaaatttt aaaattcgtg attggggtgt ttcacgccaa agatattggg gtgcgcctat
     4141 tcctatgatt aaatgtcaaa tttgtggtat agtgcctcaa aaactagaaa atttacctat
     4201 taccctacct gaagatgtgc aaattacagg tgagggtaat ccacttgata aacatccaac
     4261 ttggaaaaat tgtatttgtc ccaaatgtgg caaagaggct caaaaagaaa gtgatacttt
     4321 agatactttt tttgaaagtt cttggtattt tgcacgtttt gcaagtgatg agaaaacttg
     4381 gcaggaaaaa gctttagata aaaaaagtgt aaagtattgg atgagtgtgg atcaatatat
     4441 aggtggtatt gaacatgcaa tcttgcattt gctttatgcg agatttttcc aaaaagcttt
     4501 aagagacttg ggttatttaa cacaaaatga accttttgat agacttttaa ctcagggtat
     4561 ggtgttaaaa gatggagcta aaatgtcaaa atcaaaaggc aatgttgtag atcctgatga
     4621 gattatagaa aaatacggtg ctgataccgc aagacttttt atactttttg ctgcgcctcc
     4681 ggctaaagag cttgaatgga atgatgatgc ggttgaaggg gcttatagat ttatttgtaa
     4741 actctatgat agggcgcaaa atgttaaaaa aggtgagctt gtagaattaa aacaagaaaa
     4801 tttaaataaa gaagaaaaat atgcaagatt aaaggtatat gaagctttga aaaaatcttt
     4861 tgaagtttat catcaaagtt ttgcttttaa tactttaatt gcagcttgca tggaagcttt
     4921 aaatgcttta gcgctttgta aaaatgaagc tttggagcaa gaggcttttt atattatttt
     4981 aaatatttta gagcctatta ttcctcatgt ttgttttgag cttagcgagg agctttttaa
     5041 atgtaaaaat ttcaaaaaat tagaacttaa ggaagaggtt tttgtaaaag atactttaaa
     5101 tttagctgta agtattaatg gtaaaaaaag ggctgaattt gaaatttcaa gtagtgcgag
     5161 taaagaagaa attttagttt ttgcaaaaga aaatactgct aaatggcttg aaggtaagag
     5221 tatagttaaa gaaatttatg tggaaggaaa gctagttaat ctagtgatta aatgaaaaag
     5281 attttaattt tttgtatagg tttattttta ggtgcttgtg gatatgttcc tacatcaaaa
     5341 atcgctaata atattttcga tgagaaggtt tatgttaatg ttgaattaag tcaacaagac
     5401 ccaaaaaata gtatctatgt tgccgatact ttaaaagaaa tggtaatttc aaaattaggg
     5461 cgtaaacttg ctttaaaaca tgaagctgat gatgtaatca atgttaaaat gaataattta
     5521 gaatttattc ctttagctta tgataaaaat ggctatgtta ttagttataa agctaaatta
     5581 aatttagatt ttaatgttgt ctttaaagat ggttcaagtc aggcttttag tacaagtgga
     5641 agttataatt ttgaaatttc tccaaatagt attattagtg attctgcaag gtatgaggct
     5701 attcgagcag cttcaagcga ggcatttgat gagtttattt ccgtaattgc tattaaaggg
     5761 caaaaacgtg attccaaata ctaatgaaat agcaaagcaa actttaattg cattaaaaga
     5821 aagaaaacta aaaccaactc ctgaaaatta tacggaaatt tttgaagaat tatctttaaa
     5881 atatggtatt acaagttcaa ataaggctaa acttgataaa tacaaaacct tgcttttacc
     5941 gatttatcaa caagaattaa attctaaaac tataagaagt ttagaagaac taattagttt
     6001 tttaatttct gttttaaata gacaaagcgg aaaacaattt agtgaatttt ttgatttttt
     6061 atataccata tctaaaactt tgcaaataag taaggataaa aagataagag atttggctaa
     6121 ggtgacttcg attagaattt ctaaaactat ggatagtgaa agtatttact tgcttactaa
     6181 aaaatggaaa gagcttgaaa gaaattacga tgaaaatgac ttagaagaac aagctcgcaa
     6241 atatggtatt agtaaatatg atgattatgg tagcgtgatt aaaaaactct tagttaaact
     6301 tgaagagcgt agttatgagc actttagtga attattatgc ttgggtttaa atccttcatt
     6361 ggtagaagat ttaaaaattc aaggttttat acaaaattta acacaaaagc cttttgtaat
     6421 aggcgaagaa aattttaaaa atgaactaat ggaatttata aatcatcgta taatggttga
     6481 taatatgtat gtccaaaaaa atttaaattt ttttaatgat aatctaaaaa aaatctatga
     6541 attgcttgtc ttacttaata aatcgaatga aaaaaatatg gattttatca atactttaaa
     6601 accagatgaa aatggggaag taaaacttag ttttgaggat ttaaaactaa aatttaaaca
     6661 acttggagaa aaaattacat ctttaaataa tcaaattgaa ttcacgcaaa gcttagaaga
     6721 gagagaggct tggagtgttc ttaaagagct tgataaaatg gatgaaaatt ttaataagta
     6781 taaggttaat tattctttag ctttattttc tatagtaaat taccgtttca ttatggaaaa
     6841 atatggtatg ggaagtttga atgaaatttt tgttcgattt aaaaaaattt taaaagattc
     6901 ttgtagcgaa tttgatgaac tgtggatgat agatgaaaag agttatttga ttgtttctcc
     6961 aggaaaaagc aaagatgaaa ttacacagct tgtaaataca aatcttaaaa ctatagaaaa
     7021 ttttagattt atttataagc aagatattat aactcctaaa attcacgtgg cttatcttga
     7081 taagcaaagt aagccaagta ttaatatttt agatgagtta ataaagcaaa ttgcagcggt
     7141 taatgaacaa tataatgaaa gttgagaatt ttttagctca aaaaagtata aattacgata
     7201 aaattgatcg ttttttgatg tttagaatgt atgaaaaata taagaaatat tttaaaaata
     7261 ttcccataat ccaacttata ggcacaaatg gtaaaggtag cacgggtaga tatttaaccc
     7321 aacttttaga aaatttaaat tataaaatag ggcattatac tagtccgcac attttcagtt
     7381 ttaatgaaag attttatctt gatggtaaga ttgcaaatga tgaagaatta gaacaagctc
     7441 atataagact tgaagaaatt tttaaacaag acttgcaaaa attaagttat ttcgaatatg
     7501 ctactttttt agctatgatt ttatttcaaa aatgtgattt tattgtttta gaagcaggag
     7561 tgggtggaga atatgatgct acttctgttt ttgaaagaag aatgaatatt tttacaagaa
     7621 ttggatttga ccatattcaa attttgggca attctttaga agatattgca agaaccaagc
     7681 ttaaagttat ggcgcctata gcacttataa gtgatgagca agagcaaaat gttttaaatt
     7741 tagcaaaaaa aattgctttt ttaaaaaaag ctaatttgca agtttcttcc ttaaatcctt
     7801 ttttgaaaga aaaatttgag atttattgtg aaaagtttgt tttaccttgt tttttaaagc
     7861 ataatttaaa gcttgcatta aaggcttgtg aaattttaac ttcgcaagaa aaaaccttag
     7921 aagctttaaa aaagttacaa gagttaaatt tacaaggaag atgccaagaa atttctccaa
     7981 atttttttgt tgatgtgggt cataatccca tggctgctaa ggctatgctt gataaatttc
     8041 aaggagaaaa aataaatctt atttataatg cttatttgga taaggatatt tttcaaattt
     8101 taaatacatt aaagcctatt attgatacaa tacaaatata taaatataaa agtgcagaac
     8161 gaaagctggc cgatgatgaa atttatagta ttgcatcaaa gctaggtata caatgcaaag
     8221 aatttgtaaa attagaagag aataaaaaaa atctagtttt tggttctttt atgctggtag
     8281 aaaatttttt aaaggagtgg tgtggtaaaa aataaattca ctattaccat tacagatatt
     8341 aacggttcaa gacattttta tttaaatcaa ataatcaaaa aaatagtttt ttatactatt
     8401 gcttttattg ttttattttt agtttttagt ggtttttata tcaaatatct cgatagcaaa
     8461 cttagcgata tcagtgaaaa gcgtgaggag cttttgaaaa aaagcaaaga attggaatta
     8521 tctaattcgc aaatgcaaaa aagcatagaa gaaaaaactc agcagtatgc agctatagaa
     8581 gataaaatag cttcttttga agaggctttg ggcttagaag tagaaaataa tcttacaatt
     8641 agtgcaagac ttgataatct tcagcttacc aatgagcagc aacttggaat tttgggacaa
     8701 attcctaatg gatggcctat tgaaaataaa ggcattacag gaaattttgg ctggagagag
     8761 catccgcttt taaaaagaag ggaatttcat cctggtattg atttaagagc agaaattggt
     8821 acccctattt atgcaccagc aagtggagta gtggaatttt caggttatag tgataatggc
     8881 tatggctata atgtaatttt attgcataat tttggtttta aaacagtatt tgctcatatg
     8941 atgcgcaaag aagtggtcaa agcaggtcaa tttgttaata aagggcagtt gataggttat
     9001 agtggcaata caggtctttc tacggggccg catttgcact atgaggtaag gtttattaat
     9061 aaaactttag aacctttgta ttttttaaat ttgcaaagaa aaaatatgaa tgattttttt
     9121 aatcaagaaa ggagagttcc atggcaatct ttaataaagg cggtatcagc ccaacatcca
     9181 gctctagctc agaaacaaca gtaatttctt caggtgcgag aattgagggt aaattttatt
     9241 ttgcttctat gctccatgtt gatggagagt taagtggcat tattcattct gaaagcattg
     9301 tggttatcgg aaaaaatgga aatttaaaag gtgaattaca agcagataaa attgtagtaa
     9361 atgggtgttt tgaagggcaa cttgaggcta atagtttaga aattttagcg ggcggagttg
     9421 ttaatggcga tatttcaacg caaaaaattt ctatagaaaa tggcggtcgc tttaatggaa
     9481 ctagtaaaat taaagaagat actatcaaac ttattgaaaa taataacgaa gaataatgca
     9541 agcttcattt tatgaatacc tacaaaatcc aaaaatttgt gaactttttc tttgtaaaga
     9601 tgaaaaacaa gcagatttac tcgctcaagt ttcacgattt aagggtttaa aaacctttgt
     9661 tttacctgat tttagagcgc agtttggaga tgatttaagg gctttttcta aagaactttt
     9721 tgatctttgt aagattttaa atgcttatca taaagaagaa gaaaaaaaaa tccttatttc
     9781 tcctttaaat actgttttaa aaaaacttcc ttcaaaaaaa catttacaaa attatcatat
     9841 cgataaaaaa caaaattttg atttgaaatg ttttgaagat gaaatttca
//
LOCUS       DARBBO010000060         9462 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.060, whole genome shotgun sequence.
ACCESSION   DARBBO010000060 DARBBO010000000
VERSION     DARBBO010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9462)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9462)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9462
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.060"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(86..469)
                     /gene="queF"
                     /locus_tag="SB854_001190"
     CDS             complement(86..469)
                     /gene="queF"
                     /locus_tag="SB854_001190"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent 7-cyano-7-deazaguanine reductase
                     QueF"
                     /protein_id="HEG0957179.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            629..1228
                     /locus_tag="SB854_001191"
     CDS             629..1228
                     /locus_tag="SB854_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEG0957180.1"
                     /translation="MKKSIAIIGGSIAGLSAALFFASAKNEELDFDITVFDEGKADLK
                     AAAIYNVPFFPKGAKADEIYTHIKAQIASMLEVKYIDSKVVSISGEKGDFTVNDEQGL
                     GIKADYIIVATGANKSDIKELEDFVIPHELMPKPNKFCFKHHGRQIIKEGIYAAGLAS
                     GVTTMVACAMGSANEAACAILSDIKGAVSVYHDTPTTRV"
     gene            complement(1233..2114)
                     /gene="metA"
                     /locus_tag="SB854_001192"
     CDS             complement(1233..2114)
                     /gene="metA"
                     /locus_tag="SB854_001192"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HEG0957181.1"
                     /translation="MPLIIPENIPAYELLKEHAFIMGSRRAKHQDIRPQEILIVNLMP
                     KKIETENQILSLLANSPLQVNITLLATTSYVGKNTPFTHLEKFYKGLEEVKKHKFDGA
                     IVTGAPVEQMDFEKVAYWEELLEIFDFLKQNVTSSMYICWGAMAALKYFYGVDKISLD
                     KKIFGVYKHDKVSPDLLLTNLDEKVLMPHSRHSSMDEEQILALQKQGKLKILLRNKKI
                     GSALLRDEKNIFILGHLEYFKETLHQEYVRDNFIQKAKNYYDKKGNIKYNWRSNANTI
                     FANWLNYDVYQSTPFVL"
     gene            complement(2197..3468)
                     /locus_tag="SB854_001193"
     CDS             complement(2197..3468)
                     /locus_tag="SB854_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HEG0957182.1"
                     /translation="MNFNKETLALHGAYNFDTQRSISVPIYQNTAYNFENLDQAAARF
                     NLQELGNIYSRLSNPTSDVLGQRLANIEGGAFGIPVTSGMAACFYALINLASSGDNVA
                     YSNKIYGGTQTLISHTLKNFGIEAREFDIDDLDSLEKVIDQNTKAIFFESLSNPQIAI
                     ADIEKINQIAKKHKIVSICDNTVATPFLLQPFKHGVDVIVHSLSKYVSGQGTALGGAL
                     IERKDLNDLLKNNDRYKAFNTPDPSYHGLNLNTLDLPIFSIRVIITWLRDLGASLAPQ
                     NAWLLLQGLETLAVRIEKHSQNAEKVANFLNSHPDIKGVNYPTLASNAYHNLFKKYFD
                     KNFASGLLSFEAKDYEHARRICDKTQLFLLAANLGDSKSLIIHPASTTHSQLSEEELQ
                     KAGITKATIRLSIGLENSDDLIADLKQAIES"
     gene            complement(3894..6452)
                     /gene="flgE"
                     /locus_tag="SB854_001194"
     CDS             complement(3894..6452)
                     /gene="flgE"
                     /locus_tag="SB854_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG0957183.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTRYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFID
                     PGMHIPAAKSTEVAIKANLNSGLNIGTASRPIYGLDSIHGFNKKTGETKDENDTGTTQ
                     FYTTSKNSVEVTEKGVDAGALFNANGTGLNLREGQGIWVSYADAKFSTAGEGARANQG
                     NNGVFDPNQKVNQNSVIFWGHEQKPTTLDITLNGVHIQNTSIKSLDEAIAYINTFTAP
                     NDTRDGTGVRAVKKADGSGIDFINDNADGTTDNMKNIDLQVNANNSAGELINIRVAGN
                     PADFAWNNIQLRPAGNPIIPGNGSAWIAGTAAQNQDRIQIVTAHKYIYSSTPQTLPPL
                     YNPDGGHTWNNANINTPGTPENNYQLAMSGSFLTTTPRVFRTTEDLRELLQRDARYGV
                     DYDGSGGFETTGEDVNEGVSVVITENGNFSIANPNVASNPPAGIQNPNRTTHNINFNV
                     TAYSNKQGTVSTNDAFTKIFKAFDGVLTVGGQIKESEQLKLSAFSAGLEIYDSLGSKH
                     TLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIVVGTARFNNDGSLASYN
                     PKTLNFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGNLKPDAI
                     RVDDKGNILGEFTNGKTFAVAKMAMASVANNSGLEEIGGNLFKVTANSGAIVVGEAGT
                     GGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQLKQ"
     gene            complement(6657..7139)
                     /gene="ruvC"
                     /locus_tag="SB854_001195"
     CDS             complement(6657..7139)
                     /gene="ruvC"
                     /locus_tag="SB854_001195"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HEG0957184.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEADKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            7235..8557
                     /gene="dnaA"
                     /locus_tag="SB854_001196"
     CDS             7235..8557
                     /gene="dnaA"
                     /locus_tag="SB854_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEG0957185.1"
                     /translation="MNPSQILENLKKELSENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFESFVVGDSNKYAYGACKAIAHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDASLKAKIEELKNKILVKSQS"
     gene            8717..>9462
                     /locus_tag="SB854_001197"
     CDS             8717..>9462
                     /locus_tag="SB854_001197"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEG0957186.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFK"
BASE COUNT         3288 a         1621 c         1409 g         3144 t
ORIGIN      
        1 ttatatattc ttcaaagatt aaataagaat tttttataaa atacttaatc tttacataaa
       61 aatatgttaa tattttactt aaatattatt ttggcactac catatcgcta cgacattcta
      121 tcaccgtatg cacatttcca cgcgggttaa aatcccccac aactttaatc cattttggct
      181 tgagtttgtc ttttagagta ttataaattt cattgatact tgcttcatgt gaaacatttc
      241 tatacataaa agtattgata taaagtttta tcgctttaag ctcaaccaca aatttatcag
      301 gcatatactc aagataaatc gttgcaaaat caggataacc tgaacgcgga caacaacaca
      361 taaattcagg caaggtgatt ttaatgatat agtcattttt agcatcattt ggccaaattt
      421 ccatattttc tacatcaaat tctttaattt ctttttcacc ataacgcatg agctttcctt
      481 attgaaaatt tttagaaaat tatataaaaa attactttta gagcaattga aaaataaaca
      541 tttttagcaa attgcataaa aaagacaaat attatattaa ataaagcttt ttatactaga
      601 ataaggcaaa tctttcaaaa ggaaaaaaat gaaaaaatca attgcaatta taggcggtag
      661 catcgcagga cttagcgcgg ctttattttt cgcttcagct aaaaatgaag aacttgactt
      721 tgatatcact gtttttgatg agggtaaagc agatttaaaa gcagcagcaa tttacaatgt
      781 tccttttttc ccaaaaggtg caaaagcaga tgaaatttac actcacataa aagcacaaat
      841 tgcttctatg ctcgaagtaa aatacatcga ttcaaaagta gtaagcataa gcggagaaaa
      901 aggagatttt actgttaatg atgagcaagg cttgggtata aaagcagatt atatcatcgt
      961 agcaacaggg gcaaacaaaa gcgatatcaa agaacttgaa gattttgtaa taccgcatga
     1021 gcttatgcca aaaccaaaca aattttgctt caaacatcac gggagacaga ttatcaaaga
     1081 aggaatttac gcagcaggac ttgcttcagg tgttacgact atggtagctt gcgcgatggg
     1141 aagtgccaat gaagcagctt gcgcgatttt aagcgatatc aaaggtgcag taagcgtata
     1201 tcacgataca cctactacaa gagtttaaat catcaaagca caaaaggtgt gctttgatac
     1261 acatcataat tgagccaatt tgcaaaaatg gtatttgcat ttgaacgcca attgtatttt
     1321 atattgccct ttttatcata ataattttta gctttttgta tgaaattatc tcttacatat
     1381 tcttgatgta aagtctcttt aaaatattcc aaatgcccta aaataaaaat attcttttca
     1441 tctcttaata aagccgaacc gattttttta tttctaagca aaatttttaa tttcccttgt
     1501 ttttgtagtg ctaaaatttg ctcttcatcc atgctagaat gtcttgaatg aggcattaaa
     1561 accttttcat ctaaatttgt taaaagcaga tcaggcgaaa ctttatcatg cttatagact
     1621 ccaaaaattt tcttatctaa agagatttta tccacaccat aaaagtattt taaagcagcc
     1681 atggcacccc aacaaatata catagaactt gttacatttt gctttaaaaa atcaaaaatt
     1741 tctagcaatt cttcccagta agcaaccttt tcaaaatcca tttgttccac aggagctcct
     1801 gtaacaatag caccatcaaa tttatgtttt ttaacctctt caagaccctt gtaaaatttt
     1861 tccaaatgag taaaaggagt atttttaccc acatagctag tcgtggctaa aagtgtgata
     1921 tttacttgca aaggagaatt tgcaagtaag cttagaattt gattttctgt ttcaattttt
     1981 tttggcataa gattgacaat caaaatttct tgcggcctga tatcttgatg ctttgctctc
     2041 cttgatccca tgataaaagc atgctctttt aaaagctcat aagcgggtat attttctgga
     2101 ataatcagtg gcattttttc tcctttattt aataaacctt atttatgata aagcatggtg
     2161 gaatttttat ctcattcact caatgcaaac acacttttaa ctttctatag cttgttttaa
     2221 atccgctatc aaatcatcgc tattttcaag tcctatgctt aagcgtatag tagctttcgt
     2281 aatgcctgct ttttggagtt cttcttcgct tagttgcgaa tgagtagtag aagcaggatg
     2341 gatgatcaaa gacttgctat cacccaaatt tgcagcaagt aagaaaagtt gagttttatc
     2401 acaaattctt ctagcatgct cataatcttt agcttcaaag cttaaaagcc cgctagcaaa
     2461 atttttatca aaatattttt taaataaatt atgataagca ttacttgcta aagtaggata
     2521 atttacgccc ttgatatcag gatgagaatt taaaaaattc gcaacttttt cagcattttg
     2581 actgtgtttt tctatacgca ctgccaaggt ttcaagtcct tgtaaaagta accaagcatt
     2641 ttgaggtgct aagctagctc ctagatctct aagccaagtg atgatgactc taatactaaa
     2701 aatcggcaaa tcaagtgtat ttaaattcag tccatgataa cttggatcag gagtgttaaa
     2761 agctttatat ctatcgttat ttttaagcaa gtcgtttaaa tcttttcttt ctataagtgc
     2821 tccacccaaa gcagtgcctt gaccgcttac atatttactt aaactatgca cgattacatc
     2881 cacgccatgt ttaaaaggtt ggagtaagaa aggagtagca acggtattat cacaaatgct
     2941 aacgatttta tgtttttttg ctatttggtt tattttttct atatcagcta tggcaatttg
     3001 aggatttgaa agactttcga aaaaaatcgc ttttgtgttt tgatctataa ctttttccaa
     3061 gctatctaaa tcatcgatat caaattccct agcttctatg ccaaaatttt taagtgtgtg
     3121 agaaattaaa gtttgagtcc caccataaat tttgttcgaa tacgcgacat tatctcccga
     3181 acttgctaaa ttgataagag cataaaaaca agctgccata ccgctagtaa caggaattcc
     3241 aaaagcccct ccttcgatat tagcaagtct ttgtcctaaa acatcgcttg taggattgct
     3301 aagtcttgag taaatattgc caagttcttg aagattaaac cttgctgcag cttgatccaa
     3361 attttcaaaa ttatacgcag tgttttgata tataggcaca ctaatacttc tttgagtatc
     3421 aaaattataa gctccgtgta atgctaaagt ttctttattg aaattcattt tttatcctta
     3481 ttgtgtcaat gaaaaaatgt taaaaagctt tttatcggct ttaaattagg ctatttgaaa
     3541 atgtaaattt atagaatatg agtatatacg agtagattaa gcgtgccaag cacgcataca
     3601 gaaagaagaa agcattaagt taaaactaat ataagacatt ttttctcctt tctaaaaaat
     3661 tattgattat tctatcttta aaaaataaaa ttaaaattaa attttaaaaa atttatatca
     3721 cattgcttaa aattttattg caactcaccc ctagcaagag tgagttagca ataaattgaa
     3781 ggcagttcaa gcctaaacct agtattacaa gactaccaag ataggcttgt aaagcaaggc
     3841 ttgctccctt taagggagca aaaaacaata ttttatagaa tactaagctt aaattattgt
     3901 ttaagctgga ttagagtttg aagcatttga tcactcgttg aaatggtttt tgagtttgct
     3961 tgataacctc tttgaatgat gataagctct gttaaagaac gacttaaatc cacatttgac
     4021 atttcaagag ctgaggtttt catctcacca cgacctcctg ttcctgcttc acctactact
     4081 atagccccac tatttgcagt gactttaaaa agatttccgc cgatttcttc aaggcctgag
     4141 ttatttgcta ctgaagccat cgccattttt gccacagcga aggttttacc atttgtaaat
     4201 tcacctaaga tatttccttt atcatccaca cggatagcat caggctttaa gttacctgaa
     4261 gtataaccat cagttgcttg tcctgttaga gttgaagcag aatttgagct tacaaggccg
     4321 tcattgcttc cacttgttcc aaaggaaagt ttgatttgtt gatttggtgc ggcaccgtta
     4381 ttgggtgaaa aatttaaagt tttaggattg taactagcca aagagccatc attgttaaat
     4441 cttgctgttc ctacgacgat attgtttggt ccttcgcctg tagtgttaat ctcagcaggt
     4501 tctggcacac ggataatcat ctgccattca ttacccccat cttgagtggt actttgcttg
     4561 acaaactgca cttctaaagt atgttttgaa cctaaagaat cataaatttc aagccccgcc
     4621 gaaaaagcag aaagcttaag ttgctcactt tctttgatct gacctccgac tgttaaaact
     4681 ccatcaaaag ctttaaaaat tttagtaaag gcatcattgg tacttacagt tccttgttta
     4741 ttactatagg ctgttacatt aaaatttata ttatgtgttg ttctatttgg attttgaata
     4801 ccagctggtg gattacttgc aacattagga tttgctatag aaaaatttcc attttctgta
     4861 ataacaacac ttacaccttc atttacatct tcacctgtag tttcaaatcc accgcttcca
     4921 tcataatcca ccccatatct agcatctctt tgtaaaagct ctcttaagtc ctctgtagtt
     4981 ctaaaaaccc ttggtgttgt agttaaaaat gaaccactca tagctaattg ataattattt
     5041 tcaggagtac caggagtatt tatatttgca ttattccaag tgtgtccacc atcaggatta
     5101 tacaaaggtg gtaaagtttg aggagtagag ctataaatat atttatgagc tgttactatt
     5161 tgtattctat cttgattttg agcagcagtt cctgctatcc aagcactgcc attaccaggt
     5221 attataggat taccagcggg tcttaactgt atattattcc aagcaaagtc agcaggatta
     5281 cctgcaaccc ttatattaat aagttctcca gctgaattat tggcattaac ttgtaaatct
     5341 atatttttca tgttatctgt agtgccatca gcattgtcat tgataaaatc aatcccacta
     5401 ccatctgctt tttttaccgc tcttactcct gttccatctc ttgtatcatt tggtgcagta
     5461 aaggtattga tataagctat agcttcatcc aagcttttta tagaagtatt ctgtatatga
     5521 actccattta aagtaatatc caaagttgta ggtttttgtt catgtcccca aaatataaca
     5581 gaattttgat ttactttttg attaggatca aaaacaccat tattaccttg atttgctcta
     5641 gctccttctc cagctgtact aaacttagca tctgcataag atacccaaat tccttgacct
     5701 tctcttaaat ttaaacctgt accattagca ttaaataaag ctccagcatc aacgcctttt
     5761 tcagttactt ctacagaatt cttagaagtc gtataaaact gagtggttcc tgtatcattt
     5821 tcatctttag tttcacctgt ttttttatta aaaccatgta tagaatcaag tccatatata
     5881 ggacgacttg ctgttcctat atttaaacca ctatttaaat tcgctttgat ggctacttcg
     5941 gttgattttg ctgcagggat atgcataccg ggatcgataa aaatattttg cggagttctt
     6001 gagctatcta tactttgagt atcccaattg atattccacc cttgaactac aaagccggca
     6061 ttattaacaa aatttccata agcatctagt ttaaaatccc cgctccttgt aagatagcga
     6121 gtaagccccc catcatcact caccataaaa aaaccatcac catttatagc cacatcagtg
     6181 tttttatctg tggtttgaac tgaaccttga gaatgaattc tagttgtaga acttactgaa
     6241 acgccaagac cgatttgaag tggattagat ccacctcttc catcagttgg agctgtagcg
     6301 attttcacag tttggctaaa catagtccca aaatctgcac gggagtattt aaaaccagtg
     6361 gtattaacat ttgaaatgtt attaccttca acatccatcg caacttgatg tgcttgtagt
     6421 ccgcttacgc cagaccaaag tgatctcatc atcttaaatc ctttataaaa tattgcttta
     6481 aaaaaattta acgctttggc tttaaaaaac ttttgcgttt atgtgaagtt tacaagcaag
     6541 ttctgttcca acttttgaaa ttttttatga atttttaaaa aatttataga aaaaatttaa
     6601 aggtatttta ggagtttatg aagctttggg cttttgtgta ataaaaatta ctaaaatcac
     6661 accctaactc ttaaatttgc tgcatgggtt aaagctactg caatagcatc tgtgatatcc
     6721 aaaggcttga tatctttact aagtcctaaa agccttttta ccataaaagc aacttgttct
     6781 ttagttgctt tggcttttcc tgtaacggct ttttttactt gtaagggagt gtattctgca
     6841 aaatctccat gaatttgaag aatttttaaa gatagggctc cgcgaaattg tgcgagtttt
     6901 aaaacggttt ttggattgta agcaaaaaag atatcttcta tagccacctc atcaaaagaa
     6961 tgatttttaa aaatcaagtc caaaccctcg caaagctctg tgatttgata ctgtaaggta
     7021 cttggcttta tctttataag tcctgcttct atgagaatgt tttttccttt gtcagcttct
     7081 atgatagcat aaccacaatt tctcgaacct ggatctatac ctaaaatttt caaattcata
     7141 ccttttgaaa aataaaatac aaaagcggat tttaaccttt ttttataaaa tttaagataa
     7201 aatttataca ttatgcaaaa tttaaagaga gattatgaat ccaagccaaa tacttgaaaa
     7261 tttaaaaaaa gaattaagtg aaaacgaata cgaaaactat ttatcaaatt taaaattcaa
     7321 cgaaaaacaa agcaaagcag atcttttagt ttttaatgct ccaaatgaac tcatggctaa
     7381 attcatacaa acaaaatacg gcaaaaaaat cgcgcatttt tatgaagtgc aaagcggaaa
     7441 taaagccatc ataaatatac aagcacaaag tgctaaacaa agcaacaaaa gcacaaaaat
     7501 cgacatagct catataaaag cacaaagcac gattttaaat ccttctttta cttttgaaag
     7561 ttttgttgta ggggattcta acaaatacgc ttatggagca tgtaaagcca tagcacataa
     7621 agacaaactt ggaaaacttt ataatccaat ctttgtttat ggacctacag gacttggaaa
     7681 aacacattta cttcaagcag ttggaaatgc aagcttagaa atgggaaaaa aagttattta
     7741 cgctaccagt gaaaatttca tcaacgattt tacttcaaat ttaaaaaatg gttctttaga
     7801 taaatttcat gaaaagtata gaaactgcga tgttttactt atagatgatg tacagttttt
     7861 aggaaaaacc gataaaattc aagaagaatt tttctttata tttaatgaaa tcaaaaataa
     7921 cgatggacaa atcatcatga cttcagacaa tccacccaac atgctaaaag gtataaccga
     7981 acgcttaaaa agtcgttttg cacatgggat catagctgat ataactccac ctcaactaga
     8041 tacaaaaata gccatcataa gaaaaaaatg tgaatttaac gatatcaatc tttctaatga
     8101 tattataaac tatatcgcta cttctttagg ggataatata agagaaatcg aaggtatcat
     8161 cataagttta aatgcttatg caaccatact aggacaagaa atcacactcg aacttgccaa
     8221 aagtgtgatg aaagatcata tcaaagaaaa gaaagaaaat atcactatag atgacatttt
     8281 atctttggta tgtaaagaat ttaacatcaa accaagcgat gtgaaatcca ataaaaaaac
     8341 tcaaaatata gtcacagcaa gacgcattgt gatttaccta gctagggcac ttacggcttt
     8401 gactatgcca caacttgcga attattttga aatgaaagat catacagcta tttcacataa
     8461 tgttaaaaaa atcacagaaa tgatagaaaa tgatgcttct ttaaaagcaa aaatcgaaga
     8521 acttaaaaac aaaattcttg ttaaaagtca aagttaagtg aaaggatgtg aaaaataaat
     8581 tctagagtgt gaaaaaaaga aattaagcaa agtatgataa aatacaaatt tgattatttt
     8641 gctttgaaaa atttcacaat ttcaacaagc ttattattac aacgaattta aaattaaaat
     8701 aaaccaagga gaaaaaatga agttaagtat caataaaaat actttagaat ctgcagtgat
     8761 tttatgtaat gcttatgtag aaaaaaaaga ctcaagcacc attacttctc atcttttttt
     8821 tcatgctgat gaagataaac ttcttattag agctagtgat tatgaaatag gtatcaacta
     8881 taagataaaa aaaatccgcg tagaatcaag tggttttgct actgcaaatg caaaaagtat
     8941 tgcagatgtt attaaaagct taaacaatga agaagttgtt ttagaaacca ttgataattt
     9001 tttatttata agacaaaaaa gcacaaaata caaacttcct atgtttaatc atgaagattt
     9061 tccaaatttt ccaaatacag aaggaaaaaa ccaatttgac attgattcaa gtgacttaag
     9121 tcgttctctt aaaaagatat taccaagtat tgatacaaac aacccaaaat actccttaaa
     9181 tggtgcattt ttagatataa aaacagataa aattaacttc gtaggaactg atacaaaacg
     9241 ccttgcaatc tatactttag aaaaagcaaa taatcaagaa tttagtttta gtatccctaa
     9301 aaaagctatt atggaaatgc aaaaactttt ctatgaaaaa atagaaattt tttatgatca
     9361 aaatatgctt atcgctaaaa atgaaaattt tgaattcttt acaaaactta tcaatgataa
     9421 atttccagat tatgaaaaag ttataccaaa aactttcaaa ca
//
LOCUS       DARBBO010000061         9356 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.061, whole genome shotgun sequence.
ACCESSION   DARBBO010000061 DARBBO010000000
VERSION     DARBBO010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9356
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.061"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..169)
                     /locus_tag="SB854_001198"
     CDS             complement(<1..169)
                     /locus_tag="SB854_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K+-transporting ATPase subunit F"
                     /protein_id="HEG0957187.1"
                     /translation="MRKGYPMDIIFALLLLLAFGSLCFFIRFCEIQTKDTRMIFLLVL
                     SLILALYLFYAL"
     gene            complement(311..1735)
                     /locus_tag="SB854_001199"
     CDS             complement(311..1735)
                     /locus_tag="SB854_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HEG0957188.1"
                     /translation="MDFLTSLSERGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVTSATLQASGGLDVMLQIAERILRHNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCIGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKAALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
     gene            complement(1898..3148)
                     /locus_tag="SB854_001200"
     CDS             complement(1898..3148)
                     /locus_tag="SB854_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEG0957189.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTNK
                     SQELAKKIIECLNEEGYFEYDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKCFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(3148..3876)
                     /gene="lptB"
                     /locus_tag="SB854_001201"
     CDS             complement(3148..3876)
                     /gene="lptB"
                     /locus_tag="SB854_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HEG0957190.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(3869..4276)
                     /gene="tsaE"
                     /locus_tag="SB854_001202"
     CDS             complement(3869..4276)
                     /gene="tsaE"
                     /locus_tag="SB854_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEG0957191.1"
                     /translation="MKEFILAKNEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSTMQKYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(4273..4518)
                     /locus_tag="SB854_001203"
     CDS             complement(4273..4518)
                     /locus_tag="SB854_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEG0957192.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLALPSTKSIPKNAQNEYVVKL"
     gene            4674..5894
                     /locus_tag="SB854_001204"
     CDS             4674..5894
                     /locus_tag="SB854_001204"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEG0957193.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFSPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMVIGRESANDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            5907..6350
                     /locus_tag="SB854_001205"
     CDS             5907..6350
                     /locus_tag="SB854_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEG0957194.1"
                     /translation="MKVLLIKDVKALGKAGEIKEVKDGYGQNFLIAKGFAKAATNEVL
                     RKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTLKSLGIHEVSVKLGHAIHAKFNINIKAE"
     gene            6350..6892
                     /gene="hslV"
                     /locus_tag="SB854_001206"
     CDS             6350..6892
                     /gene="hslV"
                     /locus_tag="SB854_001206"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEG0957195.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHTDLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            6889..8208
                     /gene="hslU"
                     /locus_tag="SB854_001207"
     CDS             6889..8208
                     /gene="hslU"
                     /locus_tag="SB854_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEG0957196.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKMDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGDLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            8205..9080
                     /gene="era"
                     /locus_tag="SB854_001208"
     CDS             8205..9080
                     /gene="era"
                     /locus_tag="SB854_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEG0957197.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSMGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIITLNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKEIYRDFILESIYENLSDELPYSSEVLIHRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            9067..>9356
                     /locus_tag="SB854_001209"
     CDS             9067..>9356
                     /locus_tag="SB854_001209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957198.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDY"
BASE COUNT         3483 a         1582 c         1441 g         2850 t
ORIGIN      
        1 atagagcata aaataaataa agagcaagta ttaagcttaa aactagtaaa aatatcatcc
       61 gcgtgtcctt agtttgaatt tcacaaaaac ggataaaaaa acataaacta ccaaaagcta
      121 aaagtagaag caaagcaaag ataatatcca taggatagcc ttttctcatt gattcaaaat
      181 aggatttatt ctatccttgt taagcttata ttttgattaa tactaatttt atgatttatt
      241 tataattttt atctatatta aataaaaaga caaatgaaga atttagcagg aaaaatcctg
      301 ctaaaaattg ttaaagataa cctgctgcca tagcaataaa atatcctgct atacaagaag
      361 tgattacacc tataagacct ggtaaaataa aactatgatt gataacaaat ttaccgatgt
      421 gagtagtacc tgatctatca aattgtatag tagccaaatc gcttggataa gttggtaaaa
      481 tataataccc ataacaagca gccgcaaaag caacaattac accaggttca acaccaattc
      541 ctaaagccaa aggaacaaaa gctgaaatag ccgctgcttg agagtttaca aattttgaaa
      601 ttaaaagaag cattacagca taagtccaag gatgctcttt tactatatct ccaagcgctg
      661 ctttcatcat aggagtgtga actgcaaaca tagtatcagc catccaagaa attccaaaaa
      721 ccgcaacaag tgctatcata cctgatttaa aaatttcatt agagccgatt ttctttgcat
      781 ctgttttagt aaagatgata atcaaagaac ctgctaaaag cataaacatc tgaataactg
      841 aaaccatgga taaaacatcc attttaggat tgcctaaagc atctacttga ggaatgccat
      901 tttttacaac ttgcccccag tttggacgca agaaatcaaa tacacctaat aaagctacta
      961 aagcaatagc tcctaagaaa atccacattg caacccaatt gctttttgga agtttaacgc
     1021 ctaaaagtgt tttagaatcc ccataaacat attttttaaa ttcaggatct ttaagttttt
     1081 cttgaaatac ttcatcttta tccaaatctt ttcctctaaa ccaagaaaaa attcctatac
     1141 acaatacacc aaataatgta ctaggtatgg taatttgaag aagattaata taaccatcaa
     1201 aacctgctaa tttatgatta gcatttaaaa gcaaagcagt caaactcaca acagccacag
     1261 atacaggaga tgcaataata cccatttgtg atgatataga agctgccgcc attggacgct
     1321 caggacgaat accgttttta atcgctatat cataaataat aggcataata gtataaacca
     1381 catgtcctgt tccacaaagt atagtcaaaa agcaggttac aaaaggcgct aatattgtta
     1441 aaaacttagg attgtgtctt aaaattcttt ctgctatttg aagcataaca tccaaaccac
     1501 cgcttgcttg caaagttgca cttgtaacca ctaccgctaa aattgtaagc ataacatcta
     1561 tggctggttt tccaggcttt atatgaaaag caaatacaag cattaaaata cctataccac
     1621 caagtaaacc aagcgctatg ccgccttttt ttgcaccgta aaaaagacaa attaaaacga
     1681 taatgatttg gattgcaaat tgccctctct cactaaggct tgttaaaaag tccattttaa
     1741 ctcctttgaa aattgatatt taaaaacagt tattattgta tcacattttt aaattaaaga
     1801 ataatatttc taaaaataaa acaataattt ttatattatt taaattaaat ttaaatataa
     1861 aacaaaagtg taatgggttt gatagattga tagaatttta tccttcaagt tcatataatt
     1921 tttttctatc tgtagagctt gctatattaa gatgtttgcg atattttgta atagttcttc
     1981 gccctatatc aactttaaat tcttctttga ttaattctaa aattttacta tcgcttaaag
     2041 gtttattgcg atcttcattc tttactaaat ttgccacaaa ttctttaaca cctacatttg
     2101 aagtctctcc ctcttcatca agagcaaaag caaaaaaatc acgcaaaggg ataagtcctc
     2161 tttcacaact taaatattta tttgccacag ctcttgatat agtcgaagca ttgcgttcta
     2221 aatcaagtgc taaatcctta aaagtcatag gttttatctc ttttcccata aaaaaatcat
     2281 attgatattc tactatcata agccctattt tataaagagt agcttttctc atcgctagag
     2341 catcgactaa attttttgct tctttgatgt aatgacttaa aaaatcatgc tctaaaccat
     2401 cagtttggat tgaaatttca ggataataat catcattgat ttttacttta atttcaccat
     2461 tttctttata aacaaaaata tcaggaacaa ttatacgaga atcttcaaaa tattccaaaa
     2521 aaggaggagt gctaaagcac ttaagtacag ctaatgcttc tttatataaa ggctctttgg
     2581 tatagttttg tatattttca aaatccataa tcaacattct acaaaactca tcaatatctt
     2641 catctaactc catattttca agagcaaata aaaatgcttc tttataatct ttagctccca
     2701 ctcctacagg atctaaaaat ttaaatcttg ctcttactcg ctcaatttct tccaaagaat
     2761 actcttttaa aaattcttca tcgtattcaa aatatccttc ctcatttaag cattctataa
     2821 ttttttttgc aagttcttga gatttgtttg taggaaacaa aggaggaaga atctgttcat
     2881 ttaaaagctc ataaacactt tttttggcaa gtcctttact atccacaaaa gccgaattta
     2941 cattatgttt ataaaatgaa tcaaaataat tcttaccctt atcatgagtt tgtatcgaat
     3001 cttgaacatt taagaaagga ttatcctcag caaatttatc taaattttct tttaaatcct
     3061 ctatatttgc ttgtaaaatc ggcaaccaag agcgtaaagt ttgagaaatt ttagtcttgg
     3121 gtgcttgggt gattttttgc tttaacatca atcaaggagt ttaaactccg ctcctaaata
     3181 atactttttc acgtctttat tggttgcaat ttcatcagca ttcccactag caagcaaaga
     3241 gcccgatctt ataacataag ctctatcaca aatagctaaa gtctcacgca cattatgatc
     3301 ggtaattaaa accccaatcc ccaatctttt aagctcttta attaaagttt gaatttcagc
     3361 cactgctata ggatcaacac ctgcaaaagg ctcatcaaga agcaaaaact taggttcaca
     3421 catcaagctt ctagcgatct cacaacgcct tctttcacct ccacttaaac ttaaaccttt
     3481 ccttaaacga ataggctcta tacttaagag ttcaagcatt tgctcaactt tatcatgtaa
     3541 aattttttta tctttataaa aaatctgagc cgctaaaagc aggttatctt ctacacttaa
     3601 atccttaaaa atactacttt cttgaggtaa ataacctatc cctgatctag ctcttttatt
     3661 taaaggatct tttgtcacat ctaaaccatc taaaagaact tttccactac ttggagaaat
     3721 aagtccacat atcatataaa aagttgttgt ttttcctgca ccatttggcc ctaaaagtcc
     3781 tacaacttct ccgctattaa cctccaaaga aattccatgt ataatcttag tttttttaat
     3841 aattttttcc aaatttacaa tttctaattt actcataaat ttcatacttt cttttgtcat
     3901 ctttaatgct aattttaatc tggatagtag aaattccaaa tttcattaaa gtttttttca
     3961 aattttcacc gccccattca accaaatgca aacctttttc aaaaaaattt tcaaataaac
     4021 cattcgctaa aagtccttct aaaccttctt gataaatatc ataatgataa atgcaaatat
     4081 catgattttc atatttttgc atagtggaaa aagttggaga atctaccctt gcatcaagac
     4141 caagaaattt aacccaagct tgcaccaagc ttgtttttcc gctagccaaa tctccttgaa
     4201 gcaaaacaac accttcttta ggcattattt gaagcatcgt tttgatctca ttttttgcta
     4261 aaataaattc tttcataatt ttaccacata ttcattttgt gcgtttttag gaatgctttt
     4321 cgtactaggt agagctagca ctttatattt ttgagtgtat tcagtaaaat gtaaagtgat
     4381 aatatcacct accttaacct ctttactcgc cttaacaata acaccattaa tccccactac
     4441 accactttta cacatatctt cagaaatagc tcttcttttc gtgatattaa ctacatttaa
     4501 aaatttatct actctcataa aagcaatttt agcaaaaaaa atcaattttt ggaacaaaat
     4561 ttgcttacgc ctttgcttta tttttttaag aaaatagcaa gtaaaaactt ttctttaatg
     4621 aaatttggat acaattttat aattttcaaa cctattttaa caaaggatat cttatgaaaa
     4681 atgaagtaaa aaaagtagtt ttagcgtatt ctggggggct tgatacgagc attattttaa
     4741 aatggcttca agatgagtat aattgtgaag ttgtaacttt tacagcagat attggtcaag
     4801 gcgaagaact cgaacctgcg agaaaaaaag ccctttcttt aggcataaaa gaagaaaata
     4861 ttttcattaa agatttaaga gatgaatttg ttaaagatta tgtatttcct atgtttagag
     4921 ccaatgcaat ttatgaagga gagtatcttt taggaacaag tatagcaaga ccactcatag
     4981 caaaaactca agcacaaatt gccctgcaaa caggtgctga tgcggtaagt catggcgcca
     5041 caggcaaagg aaatgatcaa gtgcgttttg aacttggtta tcttgctttt agtcccgatt
     5101 taaaaatcat cgctccatgg cgtgagtggg atttaaacag tcgtgaaaaa ctccttgctt
     5161 atgcgcaaaa acatggcatt gatatttcta agaaaaaagg aaaatcccct tattctatgg
     5221 acgcaaattt acttcatatt tcttacgaag gacttgtttt agaagatcct gcacacgcac
     5281 ctgaagaaga tatgtggaga tggagtaaaa gcccaaaaga cgctccaaat gaaagtgaaa
     5341 ttatagaact tgatttccaa aaaggagatt tagtagcgat aaatggagaa aaactaagtc
     5401 ctgcaggact tttaaccaaa cttaacgaac taggctgcaa acacggtata ggacgccttg
     5461 atatagtaga aaatcgctat gtaggcatga aaagccgtgg ttgttacgaa actccaggcg
     5521 gtactatact tttaaaagca catagagcgc ttgaaagcat cacgcttgat agagaagcag
     5581 cacacttaaa agatgaactc atgccaaaat acgcgagttt aatttataat ggctattggt
     5641 tctcgcctga aagaatgatg cttcaagcct taatcgatga gtctcaaatt cacgccaatg
     5701 gcagagtaaa actcgagctt tataaaggca atgtgatggt tataggacgc gaaagtgcga
     5761 acgatagctt gtttaacgca gcttattgta cttttgaaga agatgaagtg tataatcaaa
     5821 aagacgcagc aggctttatc aagcttaatg ctttgcgttt tatcatcgca ggaaaaaatg
     5881 gaagaaaatt ttaataaagg aataaaatga aagtattatt aatcaaagat gtaaaagcac
     5941 ttggaaaagc aggagaaata aaagaagtaa aagacggcta tggacaaaat ttcttaatcg
     6001 ctaaaggctt tgctaaagca gctactaatg aagttttaag aaaatatgaa agcgacaaga
     6061 aaaaagaggc tgaaaattta cgctttgaaa tcgcaaattt agaaaaactc aaagaagaac
     6121 ttagcaaaat cactcttgaa atttcaaaac ccgtaggtgc aaatggaagt ttgtttggtg
     6181 gcgtaaccaa agatgaaatc gctcacgccc taaaagaaca aagccatata gaaatcgata
     6241 aaaaaagttt agaatgtgat accttaaaaa gcttaggaat ccacgaagta agcgtaaaac
     6301 ttggacacgc aatccatgct aaatttaaca taaatataaa ggcagaataa tgtttcacgc
     6361 aacaacgatt ttagcttaca aaggtaaaaa taaatccgta attggcggag atggacaagt
     6421 aagctttgga aatacggtgc taaaaggcaa tgctgtaaag attagaaaac tcaacaatgg
     6481 caaagtttta gcaggttttg caggatcaac agctgatgct tttaatcttt ttgatatgtt
     6541 tgaaaatctc cttcaaagtt ctaaaggcga tcttttaaaa gcagcaattg acttttctaa
     6601 agaatggaga aaagacaaat acctaagaaa acttgaagcc atgatgctcg tacttgatag
     6661 aaatcacatt tttctacttt ctggtacagg cgatgtggtc gaacctgaag atggacaaat
     6721 cgcagccata ggaagtggtg gaaactatgc gctttcagct gctagagcct tagcaaaaca
     6781 taccgattta gatgaagaag aacttgtaaa atcaagtctt caaatcgcag gtgaaatttg
     6841 catttatacc aataccaata tcaaaactta tgtaattgag gatgagaaat gaatctaact
     6901 ccaaaagaaa tcgttaaatt tttagatgat tatgttatag gacaaaaaaa agctaaaaaa
     6961 atcatagcta tagctttaag aaatcgctac cgcagaatgc aacttagccc tgagttgcaa
     7021 gatgatatag tgccaaaaaa tatcttgatg ataggttcta caggtgtagg aaaaacagaa
     7081 atcgctaggc gtttagctaa aatgatgggc tttcctttca tcaaaatcga agcaagtaaa
     7141 tatactgaag taggttttgt aggtcgtgat gtagaaagca tggtaagaga tcttgccaat
     7201 gcggctttaa atttggtaaa aaatgagcaa agagaaaaaa acaaagataa aatggatgaa
     7261 tttatagaaa ataaaatttt agaaaaactt ttaccacctt taccaaaggg tatcagcgat
     7321 gaaaaacaag aagaatataa aaacagtctt gaaaaaatga gaactaaact aagaaatggc
     7381 gatcttgatg aaagcaccat agagatagaa atttcacaaa atatgtttga taccaatccc
     7441 aacctacctc ctgaaatggg tgcaatgcaa gatatagtta aggttatagg cgttggcagt
     7501 aaaaaagtca aaaaagaaat gaaaatcaaa gacgctaaaa atgctttaaa aaatgaagca
     7561 ggagaaaaaa tcctcgacca agaaagcatc aaaagcgaag ccttaaaaag agcggaaaat
     7621 gaaggtatta tttttattga tgaaatcgat aaaatcgctg tttcaagcgg aaattcaaac
     7681 cgccaagatc caagtaaaga aggggtgcaa agagacttac ttcctatagt cgagggatca
     7741 aatgtacaaa caaaaatagg tactttaaaa accgatcata ttctttttat cgctgcaggg
     7801 gcttttcatc ttagcaaacc aagtgatctt atccctgaac tgcaaggacg ctttccttta
     7861 agagtggaat tagatagtct tgatgataaa gctctttatg aaattttaac acgtcctaaa
     7921 aattcacttt taaaacaata ctctcagctt ttaaaaactg aaaatttaga acttgaattt
     7981 gatgatgaag ccattaaaga aatagcaaaa atagcttcaa gagccaatga agaaatgcaa
     8041 gatataggtg ctagacgctt acatactgtg atagaaaaat tacttgaaga tctaagtttt
     8101 gaagctgatg agtatgcggg taaaaaattc gtagtggata aaaaaatggt agaagaaaaa
     8161 ctcggagata tcatagaaaa taaagatctt gcaaggtata ttttgtgaaa agtggctttg
     8221 ttagtatcat agggcgtact aatgcaggaa aaagtacttt aatcaattcc ttattagaag
     8281 aaaaaatcgc cctagtttct cacaaacaaa acgccacaag gcgtaaaatc aaagccatag
     8341 tgatgcatga aaaaaatcaa atcattttca tcgatacccc aggacttcac gaaagcggtg
     8401 ctacgcttaa tcaactgctt gtccaaagtg ctattaaatc catgggggat tgtgatgtga
     8461 ttttatttgt ggcgagtgtt tttgatagta caaaagacta tgaaaatttt cttagtctaa
     8521 acccacaagt accacatatc atcactttaa ataaagtaga tttaaccgac aatgctacac
     8581 ttttaaaaaa acttagcgaa tatgcaaaat ttagccaaca ttttaaggct atcattcctt
     8641 attcttctaa gaaaaaaagc tataaaaaag gcttgttaga tgagatagta aaatatcttg
     8701 acgaacatga atatttttat gatcctgaat ttttaagtgc gagtagcgaa aaagaaattt
     8761 atagagattt catacttgaa agtatttatg aaaatttaag cgatgagctt ccttatagta
     8821 gcgaagtgct tatccatcgc accaaagaca cacctaatct tttaatccta gaagccaata
     8881 tcatcacaga tacaaactct cacaagggta tgcttatagg aaaagaaggg gcaactttaa
     8941 aaagaatagg caaagatgca cgctttaaaa tttcaaaact tgcccaaaaa aaggtacttt
     9001 taaagctttt tgtaacagtg aaaaaaaact ggcaaaaaga tgaagaattt ttaaaaaaac
     9061 ttctaaatga tgaaaattaa ttcattaaat aaaataaatt ttataaaatc tacagattta
     9121 ctttatgctc aaagaacggg aatatccaaa gaagacgaac tttttaacaa tttaactgca
     9181 gattttaagc taagcaaacc ctttgactat caaatagctt tttttaaaca taatgaaatt
     9241 tatcattgtt ttttagcacc tgtttacaaa ttgaaaaaaa gtcgtttttg ctttcccgag
     9301 cctttaattt ttcaagcttt atttgatgaa agatttattg aggaaagtga ttattg
//
LOCUS       DARBBO010000062         9266 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.062, whole genome shotgun sequence.
ACCESSION   DARBBO010000062 DARBBO010000000
VERSION     DARBBO010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9266
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.062"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            30..1190
                     /gene="pglE"
                     /locus_tag="SB854_001210"
     CDS             30..1190
                     /gene="pglE"
                     /locus_tag="SB854_001210"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HEG0957199.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKAY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGECFSFLDELENS
                     RSNRWLSTALIDFDKNELNSCQKDINISQKNITLHPKISKLIEDLKNEQIETRPLWKA
                     MHAQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIKA"
     gene            1192..2964
                     /gene="pglF"
                     /locus_tag="SB854_001211"
     CDS             1192..2964
                     /gene="pglF"
                     /locus_tag="SB854_001211"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HEG0957200.1"
                     /translation="MIFYKSKRLAFFLTSDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSRMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFIVEEKEKIKSYVEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGRPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLDWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            2964..3857
                     /locus_tag="SB854_001212"
     CDS             2964..3857
                     /locus_tag="SB854_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEG0957201.1"
                     /translation="MYIKDIQRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQGEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     SVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMIYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            3970..4362
                     /locus_tag="SB854_001213"
     CDS             3970..4362
                     /locus_tag="SB854_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HEG0957202.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            4385..5230
                     /locus_tag="SB854_001214"
     CDS             4385..5230
                     /locus_tag="SB854_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEG0957203.1"
                     /translation="MQKKYYELFFIVEERYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEEFSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFHKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            5234..7171
                     /gene="ftsH"
                     /locus_tag="SB854_001215"
     CDS             5234..7171
                     /gene="ftsH"
                     /locus_tag="SB854_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEG0957204.1"
                     /translation="MNNNTQNNKGNPQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            7168..7785
                     /locus_tag="SB854_001216"
     CDS             7168..7785
                     /locus_tag="SB854_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HEG0957205.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFVWIFYSFSILLLALIVICIFLF
                     RAPKRGLVCSDEKAIFAPMDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            7795..8523
                     /gene="pssA"
                     /locus_tag="SB854_001217"
     CDS             7795..8523
                     /gene="pssA"
                     /locus_tag="SB854_001217"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HEG0957206.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLYPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(8514..>9266)
                     /locus_tag="SB854_001218"
     CDS             complement(8514..>9266)
                     /locus_tag="SB854_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HEG0957207.1"
                     /translation="KNVTIKFHSFQNFYEDFKSHKFNFNHEHQSIFKKNTSQQITLLH
                     PTRIRRPKFVNSTHALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYDWLEVADE
                     EIKHFKLLNSALKELGYKYGNFPVHDNLESALEATKDSLSFRMGVVHRGLEAKGLDAN
                     PFVVQKLQSSNHSIKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNRYDFIELCKTFK
                     QFSLAGKKLNIQARIKAGFTQEECEVIEKFYS"
BASE COUNT         3146 a         1077 c         1797 g         3246 t
ORIGIN      
        1 aaaattttgt tttacacaaa ggataaatca tgagattttt tctttctcct ccgcatatgg
       61 gtggtaatga attaaaatac atagaagaag ttttcaaaag caattatata gcacctttgg
      121 gtgaatttgt aaatcgcttt gaacaaagtg tcaaggctta cagtaaaagt gaaaatgcct
      181 tagctttaaa ttcagccaca gcggctttgc atttagcttt aagggtggca ggggtaaaac
      241 aagatgatat tgttttggct tcttctttta cttttatcgc ttcagtagca cctatttgtt
      301 atcttaaagc aaaacctgta tttatagatt gtgatgaaac ttataatatc gatgtagatt
      361 tattaaagct tgctattaaa gaatgtgaaa aaaaaccaaa agcattgatt ttaactcatc
      421 tttatggcaa tgcggctaaa atggatgaaa ttgttgaaat ttgcaaagaa aatgaaattg
      481 ttttaatcga agatgctgct gaagctttag gaagttttta taagaataaa gctttaggaa
      541 cttttggaga atttggagct tattcttata atggcaataa aattatcacc acttcaggtg
      601 gaggtatgct tataggaaaa aataaagaaa agattgaaaa agcaagattt tatagcactc
      661 aagctaggga aaattgtttg cattatgaac atttagatta tggttataat taccgcttaa
      721 gcaatgtttt aggagctatt ggcgtagcgc aaatggaggt tttagaacaa agagtgctta
      781 aaaaaagaga aatttatgag tggtataaag aatttttagg agagtgtttt agctttttag
      841 atgaattaga aaattcaaga agcaatcgct ggttaagtac agctttgatt gattttgata
      901 aaaatgaact taattcttgt caaaaagata taaatatcag tcaaaaaaat attactttgc
      961 atccaaaaat ttcaaaactc atagaagatt tgaaaaatga acaaatagaa acaagaccat
     1021 tatggaaagc tatgcacgct caagaagtat ttaaaggagc taaggcttat cttaatggca
     1081 atagtgagtt atttttccaa aaaggaattt gtttgccaag tggcacggcg atgagtaaag
     1141 atgatgttta tgaaatttca aaactgatct taaagagcat aaaggcttaa aatgattttt
     1201 tataaaagca aaagattagc atttttttta acttcagata ttgttttaat tttacttagc
     1261 gtttatctgg ctttttcttt gaggtttagt ggagatattc cgagtatttt ttatcatggt
     1321 atgatggttt ctgctattat tttgcttgtt ttaaaacttt catttttgtt tgtttttaga
     1381 atttataaag tagcttggag atttttttct ctcaatgaag caagaaaaat ttttatcgct
     1441 ttgcttttag ctgagttttg tttttttctt attttttatt tttttagtga tttttttaat
     1501 ccttttccaa gaagtgctat tgtgatagat tttgttcttt cttatatgtt tataggtact
     1561 ttaagaatta gcaaaagaat gcttgtggat tttaaacctt ctagaatgaa agaagaagaa
     1621 actccttgta ttgtagtagg ggcaacttct aaggctttgc atttgttaaa aggtgcaaaa
     1681 gaaggttctt tagggctttt tcctgtaggc gtagttgatg cgagaaaaga gcttataggg
     1741 acttattgtg ataaatttat tgtagaagaa aaagaaaaaa taaaatctta tgtagaacaa
     1801 ggggtgaaaa ctgccattat tgctttaaga cttgaacaag aagagcttaa aaaacttttt
     1861 gaagaacttg tagcttatgg tatttgtgat gtaaaaatat tttcttttac aagaaacgaa
     1921 gcaagagata tcagtataga agacttgctt gctagaaaac caaaagattt agatgatagt
     1981 gctgtggcgg cttttttaaa agacaaggta gttttggtaa gtggagcagg tggaactata
     2041 ggcagtgaac tttgtaagca atgtattaaa tttggtgcta agcatcttat tatggttgat
     2101 catagtgagt ataatcttta taagatcaat gatgatttaa atttatataa agaaaaaatt
     2161 actcctattt tattgagtat tttagataag caaagtttag atgaggtatt aaaaacttat
     2221 aaacctgagc ttattttaca tgcagccgct tataaacatg tgcctctttg cgaacaaaat
     2281 ccacattcag cagtaatcaa taatatttta ggaactaaaa ttttatgcga cagtgctaaa
     2341 gaaaataaag tagctaaatt tgtgatgata agtacagata aagcagtgcg accaacaaat
     2401 attatgggtt gcactaaaag agtttgtgag ctttatactt taagtatgag tgatgaaaat
     2461 tttgaagttg cttgtgtgcg ttttggtaat gttttaggtt ctagtggtag tgtgataccg
     2521 aaatttaaag cacaaattgc caataatgag cctttaactt taacgcaccc tgatatagtg
     2581 cgttatttta tgcttgtggc tgaggcagtg caacttgttt tacaagctgg agctatcgca
     2641 aaaggaggag agctttttgt tttggatatg ggtaggcctg tgaaaatcat agatttagct
     2701 aaaaaaatgc ttttactttc taatcgcaat gatttagaaa ttaaaatcac aggtttaaga
     2761 aaaggtgaga agctttatga agagcttttg attgatgaaa atgatgctaa aacgcaatat
     2821 gagagtattt ttgtagcaaa gaatgagaag gttgatcttg attggcttaa taaagagata
     2881 gaaaatttac aaatatgtga agatatttca gaggctttat taaagattgt acctgaattt
     2941 aaacacaata aagaaggcgt ataatgtata taaaagatat acaaagattt gaagataatc
     3001 gctatcgtgc tagggcttat atgagttata ttttaacaag aaatctgccc aataaacttc
     3061 ctgacattca ccttgaaacg attaaaacag ctttggataa aatagctcat gaagttgttg
     3121 tttttgatgc tttgtatatt ttagatattt caggcatgca aatagaaaat gcgatttcct
     3181 taaataaggc tcatgaaata ggacagggtg aggatagaag tactcgttct tatttttata
     3241 gagctgtaaa attaagacga tgtgttttga gcgatcctta tccttcggtt ttaaataatg
     3301 agctttgcgt gacagcttct atgccaattt acgatgataa aaataacttg ctttttgttg
     3361 tttgtattga tataaaactt gaagatattt taaagattat tcaagcagga aaatttgaat
     3421 ttgtttttac tcaatttagt cgttcggtat atttttgctt cgcactggtt ttatttgtga
     3481 ttacttgttt tttatttcaa aaaggttttt ttagtctttt tgataatcaa gctataggta
     3541 tagaacatat gtttgaaagt accatcgcta taactttggc tttagctatt tttgatttgg
     3601 caaaaacttt gatcgaacaa gaagtattag gaaggacaaa aaaagaagaa ggtggaattc
     3661 aaaaaactat ggtgagattt ttgggttcta ttatcattgc tttagctata gaagctttga
     3721 tgttggtatt taaacttgct attggtgatc tttctcagat gatttatgcg atttatctta
     3781 tcggtggagt gagcttgctt cttttaggtt taagtgtata tttatttacg gttaagtata
     3841 aaaataataa tatttgagta aaaatttaag taaaagatga tataatgctg ttttttaaaa
     3901 ttttttagct tgattaataa ggctaaaaag ggtaaaataa aactataaaa actttgaaag
     3961 gacgaaattg tgaaattgtt agttgttgat gacagttcta ctatgagaag gattattaaa
     4021 aataccctaa caagacttgg acacgatgat gttttagaag ctgagcatgg cgttgaagct
     4081 tgggatttat taactaaaaa tgaagatgta aaagttttaa ttacagattg gaatatgcca
     4141 gaaatgaatg gcttggagtt ggtaaaaaaa gtaagagcag agaaaaaata tgaagatatg
     4201 cctatcatca tggttacaac tgagggcgga aaagctgaag tgattactgc tttaaaagct
     4261 ggcgtaaata actatattgt aaaacctttt actccacaag ttttaaagga aaaacttgaa
     4321 gatgttttag gaacaggaag tggagaaggt gcagctgagt aaaggctaat ttttaaaatt
     4381 ctaaatgcaa aaaaaatatt atgaattgtt ctttatcgta gaagagcggt ataaaaattt
     4441 atttcttgat tttgcttttg atttaggtat agaagccata gaagagaaag ataatggtgt
     4501 ttacattaga tcccatgaga gtttagaaga gttttcatgg gcacttgaaa tatttgctca
     4561 aaaacttaca actactttca atttaaacca taaaattatt tctaatttaa gtcttgtaga
     4621 gaaagaaaac aaggactgga tacaagaata taaaaaaggc ataaaaccta tcttagtgga
     4681 taatgtttac atccatacaa cttggcaaga agaaaagaag aattgtataa atataaagat
     4741 taatccagcc ttagcctttg gctcaggaca tcacgaaagc acatattctt gtgtaaaatt
     4801 tttacaaaaa ttttctaaaa gtaaattaag agctttagat cttggttgtg gtagtggaat
     4861 tttgggtatt attatggcaa agtttggttg taatgttgaa atttgtgata ctgatgagtt
     4921 ggctattgat agttctttag aaaatgcaag attaaatggt gtcgattttc acaaggcttg
     4981 gtgtggatct atagataaag caaatggttt atataatcta attgttgcaa atatcattgc
     5041 agatgtgatt ttaattttag aaaaagatat taaaaaccat ttagaagata atgctatact
     5101 tattttgtca ggaattttag ataaatattc aacaagaatt aaagaaaaat ttcaagattt
     5161 ggaactcatt gatgaaatgc aaatcaatga gtggtgtagt tttgtatata aaaataataa
     5221 aaaaggataa gtaatgaata ataataccca aaataataag ggtaatccgc agggtaataa
     5281 tttttttaac aaaaatccca tttttatttt tgcgattttt gcaattgtaa tgataattat
     5341 ttttaaggga ttttttgatg gcaatggttc ttttggcggg gcattgaatg gcaatgaagt
     5401 aaataaaaat gtcccttatt ctgagttaaa aaagcttatt gaaagtggac aaatcaatca
     5461 agttagtata ggacaaacaa caatcaaagc gatttcaagc tctcacaata ctgtttatac
     5521 agcaaaaaaa gttaatgatc ctgagcttgt gagtttacta gatagtaaaa atatcgctta
     5581 tggtgcgtat tctgaaacaa attggtttac ggatatactt ttttcatggg ttttgccagt
     5641 atttattttc tttggtattt ggatgttttt ggcaagtcgt atgcaaaaaa atatgggaag
     5701 ttctatattg ggtataggaa gttctaagaa gcttgtaaat tcagaaaaac ctaaagtaaa
     5761 atttagcgat gtagctggtg ttgaagaagc taaagaagaa gtaaaagaaa ttgtagattt
     5821 tttaaagtat cctgaaagat atattaaatt gggagctaaa attccaaaag gacttttact
     5881 tgttgggcct ccaggtacag gaaaaacttt gcttgcaaaa gcagttgcag gtgaagctga
     5941 tgtgccgttt tttagtgttt caggttcgtc ttttatagaa atgtttgtgg gtgtaggtgc
     6001 ttctcgtgtg agagatttat ttgaaaatgc aaaaaaagaa gctcctgcta ttgtttttat
     6061 agatgaaata gatgctattg gtaaaagtcg tgcagcaagt ggcatgatgg gtggaaacga
     6121 tgaaagagag caaactttaa atcagctttt ggctgaaatg gatggctttg ggacagaaag
     6181 ttccccagtc attgttttag cagcaacaaa tcgcccagaa gttttagatg cagcgctttt
     6241 aagaccagga aggtttgata gacaagtttt agttgataaa cctgatttta aaggtaggtg
     6301 tgatatttta aaagtgcaca tgaaagatgt caaaatctcc ccaaaagtta aagtagaaga
     6361 tatagcacgc ttaaccgcag ggcttgcagg agctgatctt gcaaatatta ttaatgaagc
     6421 agcgctttta gcgggtaggg attctaaaaa atatgtagaa caaaatgatt tagttgaagc
     6481 tgttgaaaga gctatagcag gacttgagaa gaaatcacgt cgtattaatg aaaaagaaaa
     6541 gaaaattgtt acttatcatg aatgtggtca tgctttgatt gctgaaacta ccaaaggcgc
     6601 aaaacgtgta agtaaggttt ctgtgattcc gcgtggtctt gcggctttag gttatacttt
     6661 aaatactcct gaggaaaata aatttttaat gcaaaaacat gaacttatcg ctgaagtaga
     6721 tgtacttttg ggtggtcgtg cagctgaaga agtgtttata ggtgaaattt caacgggtgc
     6781 aagtaatgat ttagaaagag caaccgatat cataaaagct atgatttcta tgtatggtat
     6841 gagtgaaatt gcaggactta tggtacttga aaaacaaaga aatactttct taagtggtgg
     6901 acaaactatc aaagattatt ctgaaaagat ggcagaatct ttagatgatt atgtaaagaa
     6961 aaccttggat gaacgctata aagatgttaa agatacttta aatacttata agggagcgat
     7021 tgagactatg gttgcagccc tttatgaaga agaaactatt gaaggtaata aagtgcgcga
     7081 gattattaaa gagtttgagg atcaaaatag tctaccaact cgtttacaag aactcgaaga
     7141 agttaaaact gaagttaaag tagaagaatg aaagatttta ttgcaaaaga tggatattta
     7201 agtcttatta ttttaagctt aatttttatt tttgtgtgga ttttttattc tttttccatc
     7261 ttgctattag cattaattgt aatttgtatt tttcttttta gagcgcccaa aagaggactt
     7321 gtttgtagtg atgaaaaagc tatttttgca cctatggatg gtagggttac taaaatagaa
     7381 aatattcatc ataaagattt gggtgaatgt gttgaaatta ctattaaaaa tgctctttat
     7441 gatgctggga attttaatac accttttgca atgtctataa tagatattcg tttacgacat
     7501 gggctttttt tgtgcagtga attaaaatct gcaaaaatga tgaatgaaag agcttttatt
     7561 ttggcaaaag ttaaagagaa taaaacgata gccttgcgaa tctatgcagg ttcttttgat
     7621 agaaaattaa agcttgataa tatttctcat gatttaaaag caggagatag aatgggtttt
     7681 ttaattaatg gctctataag tttactttta ccaaaagata ctagaattca tataggctta
     7741 aatgatgaaa ttaaagcagg ttcattgcta ggctattttg cgtaaggaaa aataatgaat
     7801 aacagaccgc aactaattta tattttaccc aatcttttta cagctgcttc agctttttta
     7861 ggggttattt ctattatagc ttcaatacat ggaaattatt atacagcttt gatttatatt
     7921 attttatctt tgatttgcga tgggcttgat ggccgtgttg caagacttac aaattctact
     7981 tcaaaatttg gagtagaatt tgattctttg gctgatctag tagcttttgg agttgctcca
     8041 gcggttcttt tttatatggc tataggttat gattttggaa aacttggatc tttgattaca
     8101 gctttttttg tggtttttgg agctattcgt ttggcgagat ttaatgttac cacaggcact
     8161 tatgaaccct ccgtttttat aggtcttcct atacctactg cagcagttgt gagtgctata
     8221 tggacttatg cgtttatcag ttatgatttt ttaaagcctt atggcgtagt ttttttggtg
     8281 cttcaagcaa ttttagggct tttaatggta agtaatatac gttatcctag ttttaaaaag
     8341 cttgatttta atcgttctag tgttttaaaa gttttgatta ttttaattat aatattttca
     8401 tttttatatc tttaccctct tgaaagttta gtaattttag caagcttgta tgtgctttat
     8461 ggaattattc gggttttata taccattatc gtttcaaaat ttaagataag aaatcaagag
     8521 taaaattttt caatgacttc gcattcttct tgagtgaagc cagctttgat tcttgcttga
     8581 atgttaagtt tttttcccgc aagagagaat tgtttaaacg ttttgcaaag ctcaataaaa
     8641 tcatacctgt tttgatttgc aaatttccac caagtatctc cttttttaac gtgttttatt
     8701 tcatcattaa gtataatttc aagatattcc attagaagat ttttaatgga atgattggaa
     8761 ctttgaagtt tttgaacaac aaaggggttg gcatcaagcc ctttagcttc taaacctcta
     8821 tgaactactc ccattctaaa gcttaaagag tcttttgtag cttctagagc agattctaaa
     8881 ttatcatgca ctggaaaatt tccatatttg taaccaagtt ctttaagtgc tgaatttaaa
     8941 agtttgaaat gtttaatttc ctcatctgct acctccagcc aatcgtaata aaattgcaaa
     9001 ggtagatttt taaagcgata actcgcatct aaagccaggt taattgcatt aaattctata
     9061 tgagcgactg aatgaattat tttagcaagc gcatgagttg aattgacaaa tttaggcctt
     9121 cttatacgcg taggatgaag caaggtaatt tgttgtgatg tatttttttt gaaaatgctt
     9181 tgatgctcgt gattaaaatt aaatttgtgg cttttaaagt cttcataaaa attttgaaaa
     9241 gagtgaaatt ttatagttac attttt
//
LOCUS       DARBBO010000063         9063 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.063, whole genome shotgun sequence.
ACCESSION   DARBBO010000063 DARBBO010000000
VERSION     DARBBO010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9063)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9063)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9063
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.063"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(397..891)
                     /gene="luxS"
                     /locus_tag="SB854_001219"
     CDS             complement(397..891)
                     /gene="luxS"
                     /locus_tag="SB854_001219"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEG0957208.1"
                     /translation="MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWKAAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
                     LENA"
     gene            1006..2424
                     /gene="gatB"
                     /locus_tag="SB854_001220"
     CDS             1006..2424
                     /gene="gatB"
                     /locus_tag="SB854_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEG0957209.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNATINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKVRFIDKLGIKESDAEVLISSLEMSRFFESLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANADKVAEYKSGKEKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            2421..3317
                     /locus_tag="SB854_001221"
     CDS             2421..3317
                     /locus_tag="SB854_001221"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEG0957210.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLVFALSSQGMRAWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFIPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGAKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILAELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQNLLKQND"
     gene            3327..4505
                     /locus_tag="SB854_001222"
     CDS             3327..4505
                     /locus_tag="SB854_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEG0957211.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDTNGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQMAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALRVALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSICEFISLCYTFLIKEGFLNWQELCQFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(4513..6039)
                     /locus_tag="SB854_001223"
     CDS             complement(4513..6039)
                     /locus_tag="SB854_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEG0957212.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMIKWSEILRIAISWIASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVVTFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            6181..6987
                     /locus_tag="SB854_001224"
     CDS             6181..6987
                     /locus_tag="SB854_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HEG0957213.1"
                     /translation="MRGIFYIIALFSLLNADELTEALAKNNNQNSWEHFDYENTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENAQVKNLSSLYEGENNSLL
                     FQKELFVAQDNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKKLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(6984..8360)
                     /locus_tag="SB854_001225"
     CDS             complement(6984..8360)
                     /locus_tag="SB854_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HEG0957214.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIITGIVLGYTDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLDPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRIEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATIGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
     gene            8629..>9063
                     /gene="cetC"
                     /locus_tag="SB854_001226"
     CDS             8629..>9063
                     /gene="cetC"
                     /locus_tag="SB854_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HEG0957215.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDI"
BASE COUNT         3209 a         1257 c         1499 g         3098 t
ORIGIN      
        1 ttttagaagc aatttctctt aaatttttaa gaaaagtgct tttatctttt tcataagctt
       61 gtaaatcaag tataggtaag ttcatttttg ctccttaaat taaaattaag gataagaaga
      121 tattttgaat taaaatttta ttagagaaat ttttgtaagt taagatttta aatgagtatt
      181 ttgaaaaaat aaactttttt gactttctta cacattatat ctccttatcc actttttgga
      241 cctttggaaa cataatgtta agccaaagga cgcactagat actacacatc tcgcacatca
      301 gtttcatttt ttctcctttt aaaataataa aatttcaaaa tcatatataa aaatatatta
      361 attaaagctt aattgtttaa aaaataaaga ttctttttaa gcattctcga gttttaattc
      421 tttgttattc attatgctaa tacctagatt taaaaccttt tgggcaattt gtttggcttc
      481 atctaaagaa tgcattgcgc aagttccgca ttgatagata ttaagttcag gaattttgct
      541 ttgatcgctt acgcttaaaa catctttcat agctgctttc caagctttag caacactttt
      601 ttcatctggt gttccaatta aactcatata aaaacccgtg cgacaaccca taggtgaaat
      661 atcaataatt tcaactgaat ttgaatttaa atgatctctc ataaatcctg caaataaatg
      721 ttctaaggta tgagtacctt tttcgctcat aatgtcttta tttggtatgc aaaaacgcaa
      781 atcaaacacg ctaatatcat cacccttagg tgttttcata actttagcta aacgcacagc
      841 aggagctggc attttagtat ggtcaacttt aaagctgtct aataatggca ttttaactcc
      901 ttaaatataa attgtctaag aattatagca tttaaagtta atatttaaag cctttctaaa
      961 agaaaaaaag ataaaataaa acatttaaaa attcaaggaa attttatgtt tgaagtagtt
     1021 ataggtcttg aagttcatac tcagttaaat acaaaaacaa aaatcttttg ctcatgtgca
     1081 acttcttttg gagaagctcc aaataccaat gtttgtccca cttgtttggc cttaccagga
     1141 gctttgcctg ttttaaatga agaggctgta aaaaaagcta tagcttttgg aaaagctgtc
     1201 aatgcaacaa ttaataaaaa aagtgttttt aatcgtaaga attattttta tccagattta
     1261 cctaaagcct atcaaatttc acaatttgat atccctatag tagaaaaggg tgagcttttt
     1321 atcaatgtaa agggtgaaaa taaacgcata ggtattacaa gagcacactt agaagaagat
     1381 gcaggtaaaa atatccacga aaataatttt tctaaagtgg acttaaatcg tgcaggaact
     1441 cctttgcttg agattgtcag cgaacctgag cttagaagta gcgatgaggc agtagcttat
     1501 cttaaaaaac ttcattctat tatacgcttt ttagacattt cagatgcaaa tatgcaagaa
     1561 ggaagtttta gatgcgatgc aaatgttagt ataagaccta agggcgatac aaaactttat
     1621 actagagtag agattaaaaa tcttaattct tttcgtttta tccaaaaagc tatagaatat
     1681 gaggtaaaaa gacaaagtga ggcttgggaa gatggaactt acgaacaaga agtagttcaa
     1741 gaaactagac tttttgatac gacaaattta gttacaagaa gtatgcgtgg caaagaagaa
     1801 gcggcagaat atcgctattt tcctgatcct gatttattgc ctgttttatt aaaagatgag
     1861 tttttggata ttaaaatccc tgagcttcct gatgagaaga aagtacgctt tatagacaag
     1921 cttggtataa aagaaagtga tgcagaggtt ttaatcagtt ctttagaaat gagtcgtttt
     1981 tttgaaagtc ttatttctca aaatttaaat cctaaacttt gcgtaaattg gttaaatact
     2041 gaacttatgg gacttttaaa aggagaattg actatagaaa attctcctgt agatgctcaa
     2101 aagcttggag ttttaattaa acgcatagaa gatggcacta tcagtgcaaa agcggctaaa
     2161 gatgttttgg cttttgtatt tgaaaatact agcgtggaaa ttgatgaagc tatagaaaag
     2221 ctaggactta aacaagtaag tgatgactca gccatagaag cggtgattga acaaatttta
     2281 aatgcaaatg ccgataaggt tgcagagtat aaaagtggta aagagaagct ttttggattc
     2341 tttgtaggtc aaaccatgaa agaaggcaaa ggagctttta atcctgcaaa agtaaatgaa
     2401 attttaaaaa caaagcttgg ttgatgcgta tagcggttat tggtgcggga aaatggggca
     2461 gtgctttaca tctagcctta aaagaaaatc acaattgttt tatcagttct ttgcatcagc
     2521 gtgatttaga agattttgtt agcataaaag aagctttaga atgtgaatat cttgtttttg
     2581 ctttaagttc tcaagggatg cgtgcttggc ttaaagaaaa tttcatcaac aagggacaaa
     2641 aaattttaat tgcttcaaaa ggcatagaag atcaaagttg tcaattttta gatgaaattt
     2701 ttttagattt tataccaaaa gaaaattttt gtgttttaag cggtccttct tttgctgctg
     2761 aagtaatgca aaaacttcct actgctttga tgattagcgg gataaatcaa gagctttgta
     2821 aaaaatttgc aagttttttc cctgatttta ttaaaactta tattgataat gatgttcgtg
     2881 gtgctgaaat ttgtggtgct tataagaatg ttttagcaat tgcaagtggg attagtgatg
     2941 ggttaaaact tggcaataat gcaagagcgg cactgatttc aagagggctt atagaaatgc
     3001 atcgttttgg taaatttttt ggtgctaaag aagaaacttt tttagggtta agtggggcag
     3061 gggatttgtt tttaactgca acgagtgttt tatcaagaaa ttatagagta ggtttaaaac
     3121 tggcgcaaaa tcaaaaatta gatagtattt tagccgaact taatgaagta gcagaaggtg
     3181 taaaaactgc ttatgctata gaaaaactag caaaaatgaa aggaatttat acacctattg
     3241 taaatgaagt agtggcaatt tttaagggta aaagcgtgca agaagcaacg cagaatttat
     3301 taaagcaaaa tgattaagga aaaatcatga taattaaaaa tgcaaaaatt tatggagatt
     3361 ctttacaaga tatagagatt aaagaaggaa aaattaccaa tattggttct aatttacaag
     3421 gcgaagaaat tttagatgct aaaggtatga ctttacttcc atcttttgtg gatttgtgtg
     3481 tgagtttaaa aaacgataaa ttttctttag ctaatttaga gcttttagaa aatgagtgtc
     3541 taaaaggagg aatttctagt atagttttgc gtgattgcat ggattttgat gaagaaagtt
     3601 ttgctttatt tttacaaaat ttagctcaaa gaaagatgca aattttttca agtgtgcggg
     3661 ttaaggatac aaacggcaag cttaaaaatt tagccactct tttaaataaa ggtgcttgtg
     3721 ctctagaact tgacagctct ttagatgcaa atactttaaa agtaagttca caatatgctt
     3781 ttatgaaaga ctctccaatt tttgtgcgtt gttatgataa ggattttgat gataatggag
     3841 tgatgaatga ttgtgaaatg agctttgagc tagggcttat aggcatgagt aaaatcgctg
     3901 aaactagcca gatggctaaa atgaaagaat tggctaaatt ttataaaaat aaagttattt
     3961 ttgatctttt aagtttgaaa gattctttag tattattaga tgaaaaggat ttaaaacttg
     4021 taagcattca tcatcttatc aaagatgata gtgcttgtga agattttaat acggctgcga
     4081 aacttatgcc acctttaaga agcaaagaag atgttttggc tttaagagtg gctttaaaag
     4141 aaggaaaaat tagctttttg acttccctgc atagtgcaaa atcaatttct ttaaaagatt
     4201 tagcttttga tgaagcggct tttggaattc atagcatatg cgaatttata agtctttgtt
     4261 atactttttt aatcaaagaa ggatttttaa attggcaaga gctttgtcaa tttacaagta
     4321 aaaatcctag tgaattttta ggtttaaata gtggagttat agaagttggc aaagaagcta
     4381 atctagttct ttttgatgag aatgaagaaa tttttgctcc aaaaagttct ctttattctg
     4441 aggataaact ttttggaaag attaaaatgc atataattaa aggaaaaaat attttagaaa
     4501 aataagcttt acttaaattc ctaaagatag tttaaatcct aaaaatacaa gtgctgccat
     4561 aataccagcg gctggtaaag tgataatcca agccaatcct ataggcttca tcataatcca
     4621 atttgcgttt ttattataca ctcctatacc caagatagca cctatgagta tatgggtgga
     4681 gctaacagga attccaaatt gtgtagctaa gagtataact atacttgcac caagttctgc
     4741 agaaaatcca gtagtagggc gtatggttgc aagttttgaa cccactgtag taatcacttc
     4801 tttacctaaa aaccaaagcc ctacaactag agcaactcca aacatagcta aagcagcaaa
     4861 aggtacagga gaagtcgcgt taattgtgcc gttttttaag acatctaaaa tcgctgcaaa
     4921 aggacctata gcattggcta tatcattggc tccgtgtgaa aatgcaaaac tagaggctgt
     4981 aaatatttga aaccatgaga aaattctatc agtagtttta ttaagttctg tttttttaac
     5041 gattttgact atagcaaatg ttacaacata acttatagtt cctataattc cgataatcca
     5101 aaagttttgt aaaatatcta aagtgctaac attatttaaa cctttaaata aaaacattgc
     5161 cgaaatgata gcagcagcaa tacaagcaat gattggcata tgagttttta aaatagagta
     5221 aatatctata tctttttctt gatccttaaa ttccttcatt ttatttctat agaaattatt
     5281 ttcttgttct tcctcatcta aagctatagc ggaaagttct ttgatttgtt cttcttggga
     5341 ttttgttttt aaatttaaaa agtattcttc tttgaatttt tttctttctt ttttgatatt
     5401 tttcaaatca tcatttagtt tttctgatgg ttttaaaatt ttcttatcaa tatatgaata
     5461 aataatataa gctacaatac cccctaaaag aggagaagct atccaagaaa tagctattct
     5521 taaaatttca ctccatttaa tcatagagag tgtttggatt ccatcaaatt ttaaaagccc
     5581 catcataatg ctagcaccta caatcccacc aactatactg tgtgtggttg atacaggtaa
     5641 gcctttcttg gttgcaataa aaatccaaac cccagagctt aaaagtgcag caagcataat
     5701 gataacaaaa agcataggat ctaaagaatt tggaaaaata acaataccgc tgcgtatggt
     5761 tttagtaact tctgcgcctg cgaagattgc cccgcttagc tcaaaaacag ctgctataat
     5821 taaagcttgt ttaatggtta ctgtttttgc gccaacgctt gttccaaaag aattggctac
     5881 atcatttcca cctatattaa atgccataaa aatgccaaat atagaagcaa gaataaaaag
     5941 aatcaattga tgttgcgaaa tataaccaaa tccccaaata acaaatgcga tagtactgat
     6001 aataaaaata acaaaagcta tgaggttgtc tttttgcatt aataaccctt ttttatttta
     6061 attatacact tatttacttt aaatttgcta attttatttt ttagtctttg tggaattttt
     6121 atttatatta tttttttata ataaatactc aaacaagaaa taataaggaa tataagaata
     6181 atgaggggta ttttttatat aatagcattg ttttctttac tcaatgccga tgaacttaca
     6241 gaggctttag caaaaaataa taatcaaaat tcttgggagc actttgatta tgaaaatacc
     6301 aaagaagctc caaaaattca agaagagaat gtggatttta aaagcacttt tgatagctta
     6361 ctttcaaaaa ccttagaaaa taataatggt atagataaaa cagatgggaa tttggatttt
     6421 caaaatgaaa acgcgcaggt taaaaattta agttctcttt atgaggggga gaataattct
     6481 ttgctttttc aaaaagaact ttttgtggct caagataatt ataattactc agggggttta
     6541 atcaatcgtt atgaaaaaga tgatttttta tttggagtta atggttttat tgataaacaa
     6601 aaggaacaaa aagatactaa aagctttggt acagagtttg gttatagtaa atttataaag
     6661 gcttatagta attattatat acccaatgaa gcagaaaaaa aattacagct tggaatgagt
     6721 tttgtaattc caacttatac cgcttttgct tttgatataa gtaaggataa tgataaaact
     6781 aattatcaag tatcttactc tccttatagt gtatttagtt taaatttatt gcgtcgtgat
     6841 tatagtgcaa gagagactgt tgatgatact gttgttcaag ttggatttag ttttaatttc
     6901 aatgaaagtt ttttaaagca atttagaaaa aaagataata ctttagagga ggttaatcga
     6961 tatgatttcc tccaaagaac tcattagttc attccagcat tatgaaattt ttctggattg
     7021 tccatagcgt agcggaattt ttcccaatca atttgtttat cccagatagc aacgattaaa
     7081 gctgctactg aatttccgca aagatttcca accgctctca tttcagacat aaatttatca
     7141 acacctaaaa gaacacctat agcagctact ggtagaactt gtgctaaggt tgcatttgct
     7201 tctgaaattt ccatatttcc tagagccgca agcgtacttc caagcactat aaaacctgat
     7261 ccagttacac ctactgcacc ttttgaggct atcattaata ctattaaaat actgatttcg
     7321 tgtgctaaac ttaaatttac attgaaagct tgtgctagaa agattaagct catagctaga
     7381 taaatatttg tacaatcaag attaaaacta tatcccgttg gtaaaacaag tccgattgtt
     7441 gctttagaaa gtcctgcttt ttctagtttt ctcattaaag gagcaagtgc agactcgctt
     7501 gaactggttg caaaaacgat caatacttct cttgagataa atctcataaa tttgaagata
     7561 tttacttttg caaaataaca aatcagacct aagattccaa atataaaaac aagacatgaa
     7621 atcagcatta ctaaaagtaa atatgctaag ttgatcaaag agccaattcc gtattgagct
     7681 atgagtacag ccattgctga aaaggcggca ataggactaa aatacataat gatttgtaga
     7741 attttaaaaa caaaattttg taccacttca aaaactcttt gaattgcctg tttgtcttct
     7801 attctcatta aagaaataat caaagcagta attatagcaa taactaaaac ttgtatggtt
     7861 tttccttctg taaaaggtgt gataatatca gtaggcatag catcttttaa aatatgcata
     7921 atctcagagc tcgcacttac ttctgtggtt tgagaaatgt atttttgaac gctttttgta
     7981 tcaagttgac ttggatcaag attcattcca tggcctggtt gcataacatt tgccataaaa
     8041 atacctatag caagtgctaa agtacttaca acttcaaagt aaataaccgc tttagcacca
     8101 atgctaccta ctttttttaa actttcaaga ctaatgatgc ccaaaaccaa agtaacaaaa
     8161 ataatagggc ctataagaac ctttaaagca cctataaaat aatcaactcc tggtttgcta
     8221 gcaatggcta attctttatc tgtatagcca agtacaatac ctgtaataat gcctataatc
     8281 acccaaaatc caagactttt gataatacgt ttatataaag gcggttttct ttcagctaaa
     8341 gtttgactta aagtttccaa gtttattcac tccttttgat ctttgtaaaa tataatttta
     8401 acaatgtgta tcgtaaattt taacaaaaaa acaaatctag aaatactttc ttttatatga
     8461 tatgataatt ttttatataa acgttacaaa atttctcatt atttgcatta taaaatttaa
     8521 aatatttttg aaaattttat aattttgtaa ttcagtttgc tttttgttat ttattattgg
     8581 taataattct atttttgatt tatttgtttt attgggatgt tttaaattat gaaagaaata
     8641 gttttgtctg aaaatgcttt aattacttct aaaacagatc ttaaggggaa tatcatttat
     8701 gccaataatg actttttaaa atacgcaggt tataaagtcg atgagctttt atataaatct
     8761 cataatatag taagacatga agatatgcca cgcactgtat ttaaatgtct ttgggattat
     8821 attcaaaaag gagatgaaat ttttgcattt gtgaaaaata aagccaaaga tggtaatttt
     8881 tactgggttt ttgcaaatgt aagtgcttca tttgatacta atggaaatat catcaattat
     8941 tattctgttc gtcgtgcacc taatagaaaa tctctttcta taattgaaga agtttataaa
     9001 attttacttg aaaaagagca aaaatcgggc attaatgctg gagtttcagc tttaatggat
     9061 att
//
LOCUS       DARBBO010000064         9062 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.064, whole genome shotgun sequence.
ACCESSION   DARBBO010000064 DARBBO010000000
VERSION     DARBBO010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9062)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9062)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9062
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.064"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            36..707
                     /gene="hsrA"
                     /locus_tag="SB854_001227"
     CDS             36..707
                     /gene="hsrA"
                     /locus_tag="SB854_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HEG0957216.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVTKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKDQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            820..1065
                     /locus_tag="SB854_001228"
     CDS             820..1065
                     /locus_tag="SB854_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HEG0957217.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            1065..2525
                     /locus_tag="SB854_001229"
     CDS             1065..2525
                     /locus_tag="SB854_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG0957218.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFYNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(2522..3319)
                     /locus_tag="SB854_001230"
     CDS             complement(2522..3319)
                     /locus_tag="SB854_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957219.1"
                     /translation="MRLLVLFFLILPLYSVELISYNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTVNNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVIFDHANKRYTMIIGNSNV
                     LLESVEIPEEQTIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(3320..3628)
                     /gene="fliN"
                     /locus_tag="SB854_001231"
     CDS             complement(3320..3628)
                     /gene="fliN"
                     /locus_tag="SB854_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEG0957220.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(3628..4050)
                     /locus_tag="SB854_001232"
     CDS             complement(3628..4050)
                     /locus_tag="SB854_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HEG0957221.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
     gene            complement(4121..4870)
                     /locus_tag="SB854_001233"
     CDS             complement(4121..4870)
                     /locus_tag="SB854_001233"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEG0957222.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIFKK"
     gene            complement(4863..6041)
                     /gene="trpB"
                     /locus_tag="SB854_001234"
     CDS             complement(4863..6041)
                     /gene="trpB"
                     /locus_tag="SB854_001234"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEG0957223.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            complement(6038..6637)
                     /locus_tag="SB854_001235"
     CDS             complement(6038..6637)
                     /locus_tag="SB854_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEG0957224.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFALAGGIGLDN
                     IHKAVQTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            complement(6624..8225)
                     /gene="trpD"
                     /locus_tag="SB854_001236"
     CDS             complement(6624..8225)
                     /gene="trpD"
                     /locus_tag="SB854_001236"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEG0957225.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEIRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            complement(8222..>9062)
                     /locus_tag="SB854_001237"
     CDS             complement(8222..>9062)
                     /locus_tag="SB854_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEG0957226.1"
                     /translation="NDFEILNSLEDEKNDFLKMCEKAKEYLLSGDIFQVVLSKQLCIK
                     HQVNAFDYYESLSALNPSAYMFYFPSKYGVVLGSSPEFLLKIKKREIYLAPIAGTRNL
                     ENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKFGTQTRVENLFSIIKNKFVMHI
                     VSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALEITSELEDCDRGIYGGAVGFLN
                     FNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQKEYAEICAKRKALLVAFENLKK
                     ENQ"
BASE COUNT         3158 a         1617 c         1108 g         3179 t
ORIGIN      
        1 aattctttaa atttttctta ataaggatag aacaaatgag aattttagtt atagaagatg
       61 agattagcct aaataaaaca attatagaca atcttaatga atttggttat caaactgatt
      121 cttctgaaaa ttttaaagat ggagaatact ttatcggcat tagacattat gatttagttt
      181 tagcaaactg gactttacct gatggagatg gagcggaact tgttaacact attaagcata
      241 aatctccaag aacttcagtt atgattatgt cttcaaaaac agacaaagaa acagaaatca
      301 aagctttgaa agctggagct gatgattttg ttacaaaacc tttagatttt gatattctac
      361 tcgcaagaat tgaagcaaga ctaagacttg gcggaaccaa tgttattaaa attgaagact
      421 tagttattga tccagatgag gaaaaaatta cttataaaga tcaagatata gaacttaaag
      481 gaaaaccttt tgaagtttta acgcacttag caagacattc ggatcaaatt gtatccaaag
      541 aacaactttt agatgccatc tgggaagaac ctgagctagt aactccaaat gttatcgaag
      601 tagctatcaa tcaaattcgt caaaaaatgg ataaaccatt aaatatatct accatagaaa
      661 cagttcgtcg tagaggatac cgtttctgct tccctaaaaa atcttaacaa ttttgcacct
      721 tcggtgcaaa aaatttatct ttatttctat ttttatattt tatttaagtt tggttattgt
      781 ataaactaaa attatttttt aaatttttga aaggttatga tgtctctttt aattacaaaa
      841 gactgcgtat gttgtgatgc ttgcagagaa gaatgtcctg atgaagctat ttatgaaaat
      901 agtccaattt atgtaataga ccctgatctt tgttcagagt gcgttaatga tttttcagag
      961 cctgcctgta ttgttgcttg cccatatgaa tgtatcattc ctgatcctga taatgtagaa
     1021 actatagaag aattaaaact caaacataga gatagagaat tttaatggca aaaaaaacag
     1081 ccgttgttga tcttggctca aactccatta gaatggtgat ttttgaaaaa acttctagat
     1141 atggttttta tacaacttgc gaatacaaac gcaaagtaag acttggagaa aatgcttata
     1201 ataatggcaa aattctccaa gaagaagcca tgcaaagagc cgaagatgcc ttagcttttt
     1261 tcaaacaatg cgctttaaag cataagtgca aaaaaatatt tatagtaggc acatcagcct
     1321 taagagatgc cccaaattca aaaaatttca ttaaaagaat caaagataat ctgtctttaa
     1381 atatacgctg tatagatgga aaaagcgaaa gttacttagg tggtcttgca gctctaaatt
     1441 tattaagtcc ttttaaggat ggaaccactt tagacatagg tggtggttct agtgaattgt
     1501 gtttaataaa aaataataga attatttctt gcatatctct tgatattggc actgttaggc
     1561 taaaagaatt gttctatgat actggaaaaa tggattcttt agaagaattt ataaaaccaa
     1621 ttttagaaca aattcctaaa gaattttaca atcaaaacct tattgcaata ggtggaagct
     1681 taagagcaat atctaattcc atcatgcaaa aaaattccta tccactgaaa aatttacatg
     1741 attttcgcta tatgctagat gaagaaaaag gacatatttt aaaaattttt aattcaaact
     1801 tagactcttt aatcaatttt ggcataaaaa aggatcgttt tgataccatt aaagagggta
     1861 tatttatttt tttaaagatt gcggaaaaaa taaaagccaa acaagttatc acgagtgggg
     1921 ttggaatcag agaaggagtt tatttgcaag atttacttcg tcctaaaatc acatttccac
     1981 caaatttcaa tcccagttta aaatgtttgc aagataaatt tttacaatca aaacaaaaaa
     2041 ataaaactcc acattttgct ctgcaaattt ttacaaccct taaaaatctt cataaactta
     2101 acgataacta taagcatact ttactaaatg ctgccaaatt atgccatatt ggagaatatt
     2161 taaatttcta ttttgctaat gaacactctg ctcattttgt actaggtgga ttaaattatg
     2221 gattttcgca taaagaaaaa gctttaattg ctagtattat taagcttaat ggaaaaaaag
     2281 ttaatcctta taatcttgaa ccctataaac aacttttacc caatattcat accatttcat
     2341 ggcttaattt tattttgtgc ttagctaaaa ctttaagcac aaatgaagat aagattgatt
     2401 ttgcttttgc aaacaatact ctttatatat atcaagaaaa caaaattctt aatttaccca
     2461 aagatgagct caaaaaaatt gcaaaaccag ctaccatagc attagcaatc aatcaaaaaa
     2521 tttaagattt tttacctttt tgacgctgct ctataagatt ttgaattctt tttttattct
     2581 cttcaaaaaa agaatcaaaa tttttctctg ttttttctgt atgttttatt gtttgttcct
     2641 ctggaatttc aacactttct aaaagcacat tggaattacc tattatcatt gtataacgtt
     2701 tattagcgtg atcaaaaata acaagttgat tatttttatc taaaaatctt tggaaaatca
     2761 tagtaaaatc tctagaaaca ttgttatttt tataaaccat agtcttttta aaccaccaaa
     2821 gcactattaa caaaataact aaaattagca ttactaagat ataatttgta taatcatacc
     2881 cttctaaact tgtacttttt ggtttaggca ttaattcttg agaattattc acagtagttg
     2941 taggtacaga ttcgatattt gcttttcctt gctctatagc tcgtatcctt actccaaatt
     3001 tatcattgat agagctaagt tctaaattaa tattttgttt gttttgtagc ataatatagg
     3061 tattattatt tttagaacta atactaattt tatctacaag ttgagagtta agttctttta
     3121 attcatcttt agaatacgtt aaatcactaa aagttaaaag agttaaattt ttttcttttt
     3181 tttgagaaat cttgccatta taagcattat caaaagaaag cattaaatct actcggtcat
     3241 ttctatcgta gatattataa ctaatcaact caacactata taaaggtaaa attaaaaaaa
     3301 ataatactag caatctcatt taaatttctt ttttaaagta ttgaagcaca gtcttagaat
     3361 ccaaaatttc attaattctt atagcgagat ttttttcata aaccataacc tcacctttgc
     3421 caaaaattct tttattgata taaagctcaa cgctttctcc agcaggcttt tcaagatcaa
     3481 taaccgagcc tacttcaagt tttaaaagct ccgctacact catatttgta gttccaagct
     3541 cgcttacaaa atctactgta atatctaaga tatcttcata agattgcaaa agcccatgat
     3601 gaatgttaaa ctctatatca tcgctcatta tttgcaatat cctattctaa aataacaatt
     3661 ttcaaattta taagttaaag cttcatctag aactatttca gaaaaatcaa cttttcctaa
     3721 atattccgga attccgagtt tatactcgtc atcacccttg gcatcattta acaaattttt
     3781 agcataacct ataatctgat tggcgcattc tttagttaaa tcgcaccagt catcttcttt
     3841 aaatttttca tcattaatta aaatttctgc aatttttttt aaaaattctt ttggaaaaaa
     3901 taaataaaaa ttacattctc cttcgctttt gcccatgata ggaatactcg ctccataaag
     3961 ttcaccgctt atatcttgag ctgcttcaat gcgaagtctt aagatatgct cgcaaaaatg
     4021 agtgatggaa tactcaagaa tctttaacat aactaccacc tttataaaaa acttaattta
     4081 aaattatagt aaatataaaa taaaaatatg ttttaaaatt ttattttttg aaaatttctt
     4141 caatatcttt cattattata tccaaatttc cttgtttaaa acactttact atgctagttc
     4201 ccacaatcac tccgtcagca acttttctca ttctttttac atcttgatta ttttgaatgc
     4261 caaagcctac aaaaataggc aaatttgtaa aagatctgat ttcttttact ttatcttgta
     4321 agattgcttc ttcgacactt ttcgtacctg taatacctat gcttgctaat aaataaataa
     4381 aacctttagc atgttttact aactttttaa ccctttcttt aggggttgta acacttacaa
     4441 gtgtaattaa agctatatta tatctttcac actctttaat taaatcatca ctttcttcaa
     4501 aactcaattc aggcacaatc aaagcacaaa tccctaaaga ttttgctttt ttcacaaatt
     4561 tttccaagcc ataagaaaaa attaaattat aataaaccat aaaaaccaaa gcttttttag
     4621 tttttatcct agctaaaagc tcaaaaacac tatgaatatc cacgccttga tcaagagcta
     4681 tttttgccgc atctgcaata atctcaccat cggcaatagg atcactataa gcaacaccaa
     4741 gttctaaaat atcaataggg ctttgatcca atctttgcaa aaaagcttca cttgtttgaa
     4801 gatttggata acccaaaacc gtataagcca catttgcatt ttctttataa aattttctaa
     4861 aatcaaccat aaatcacccc ttttttataa tctctaatca tttgcatatc tttatctccc
     4921 ctgcctgaaa gatttactac tatcacgctt ttctttttta aagttggaca aagtttttct
     4981 aaaaatgcca aagcatgcga actttcaatc gctgcaataa taccttcttc tttacaaagt
     5041 aattttaaag cctgcataca ttcttcatca cttatagcat gatattgcgc tcttttgctt
     5101 tcaaataaaa aagcatgcaa aggaccaatt cctggataat caagccctgc agaaacacta
     5161 tgtacaggca agatattgcc taaatcatct tgtaaaacct tggttttcat accgtgaata
     5221 atgcctgttt ttcccttatt taaagtcgct gcatgataag gcgtatcaat gccaagcccc
     5281 cctgcttcaa tacctataag tttaacattt tcatctttga taaaatcata aaaaatccca
     5341 gctgcattgc ttccaccccc aacagctgcg ataatataat ctactttttt attgagtttt
     5401 tgaagttgca ttttgcattc ttttcctata atactttgaa aatgcattac cattttagga
     5461 taaggataag gacctaccgc acttccaacc acataaaaaa tatttttaat atctccaacc
     5521 caagcttgaa tagccgcagt agtagcttct tttagagttt taagcccact ttgtactgca
     5581 tgaattttag cacccaaaag ctccatttta taaacattta aagcctgtct ttgcacatcg
     5641 gttgccccca tataaatttc acattcaagt cctaaaagtg ctgctgcagt ggctgttgca
     5701 agcccgtgtt gacctgctcc tgtttctgct atgatttttt tctttcccat tttttttgct
     5761 aaaagggctt gagcgatggc attattgatt ttatgtgctc cggtatgatt taaatcctcg
     5821 cgttttaaat aaatttcatg ctgatatttt ttgcttaaat ttctagcaaa ataaagtgga
     5881 gtaggacgcc ctacataagt ttttaaaagc tcgtttaatt cttttttaaa gagtttatct
     5941 ttagaaaatt tcaaaaaagc accttctagc tcatttaaag caaacattgc actttcaggc
     6001 aaaaactgcc caccaaaatc cccataatac gcttttttca ttttttcaac tcctttaaaa
     6061 tttgttttat tttgttgata tcttttaagc ctttttcatc ttcaagtttt gaattaagat
     6121 ctaaaatttt agctcccgtt tgtacagcct tatgaatatt atccaaacct atgcctccag
     6181 ctaatgcaaa atctttagta taagaaccta ataaagtcca atcaaaactt attccattac
     6241 cgccctttaa aattccctta gcatcaaaaa gtactaaatt agcaaaaatt tcacttttta
     6301 aatctaaact attttccaca ctaatcacct gccaaacaaa aacattttgc acctttaaaa
     6361 tttcaaattc ttctttggta atagtgcgat aaatttgtat cccatcaagc ttagcttctt
     6421 taatacatct taaaatttgt tccaaatttt catctacaaa aacaccgaca acttttttat
     6481 ctttttcatg aaaaattgca cttaaatttc tcgcttgttc taaactcact cttcttggac
     6541 ttttagcaaa aataagtcca aaaaaatcaa tatttaaaaa agctaaatct ttggcatttt
     6601 tttcatcttt aataccacaa attttaagct ttagcataag cttgatactc cttaaaatat
     6661 tctataacct tacctgaata aatggcttct aaaatcatat ctttagccac taaaggcgaa
     6721 cttgctttat tggctgtata aagtgcaaac atagcattta aaactaccaa atcaaatttt
     6781 gccccttgca ttctaccgct taaaatatct tttaaatctt tagcgttgtc atatgcacta
     6841 gatcctatga tttcactatg aaaagctctt ttaaaaccaa attgttcagg acagatagaa
     6901 tactctaaaa tttctccttc acaaagctca taaattttac tttcatcgca aatactaagc
     6961 tcatccatac catcatttcc tcttaccact aaagcttttt tgcgtcctaa attttttaaa
     7021 acctctatca aaagcctatg cacaggtgcg tgataatttc ccataagttg atattttaac
     7081 tttaaattag ggtgcaataa aggacctaaa acattaaaaa ccgttcttac tccaagtctt
     7141 gatctgatct ctttaagttc tcctactaaa ggatgaaaaa atggagcatg taaaaaacta
     7201 agcccttgat tatttagttg ttttaaaact gattctaaag tgtttggagt agttatattt
     7261 aaagcttcta acacatctgt acttccgcta gaacttgaaa tggcacgatt tccgtgtttg
     7321 gctactttta ctcctaaagc tgctaaaata aaagcactag tcgtagaaac attgatactt
     7381 ttaaaaccat ctccacctgt tccacaaata tcaatcatct cactctcatc actaaaagtt
     7441 tgagaatatc ttaaaatttg tcttacaaaa gcacttaaag atttttcatt taaggacttt
     7501 tcagtgatta aaatcaacaa agccgctact tgtaaaattt cataatcttt agacataata
     7561 atcttacaaa tttgctcaaa atcatcgctt tgtaaaaaat gattttcact cattttttgc
     7621 aaataaaaac ttaaaggatt ttcttgtttt tgtggttttt ttatatcttg ttttaaaaaa
     7681 ttagaaaaaa gttgtaagcc atattcacta aaatagcttt caggatgaaa ttgcacacca
     7741 taataaggta aatttttatg tcccaaagcc ataatcacac ccttttcatc aagggctaaa
     7801 atttcaagct catcactaag ctgtttaacc tctaaagaat gataacgcat tacactaaaa
     7861 tttgaaggca aattagaaaa taattcattt tccctgcact gttttatcaa agaatttttt
     7921 gcatgcatag gctcttgcat cttaaccact aaagaatcaa aagctaaagc taaagcttga
     7981 tgtcctaagc aaatgcccaa aacagggata ttaagccttg ctttaaaaat ttcaagacaa
     8041 atcccacttt gacttggatg ctttggacca ggacttaaaa taatatgagt aggatttaaa
     8101 tttttaattt cactcagaga aattgcatca tttcttctta ctaaaatttc atcattgctg
     8161 agttgctcta acatgctttt aacattaaaa acaaaagaat cataattatc aattaaaagt
     8221 atcattgatt ttcctttttt aaattttcaa aagctaccaa aagcgccttg cgtttagcac
     8281 aaatttctgc atattctttt tgactctcac tttgcaaaac aatacccgcc ccacttgcca
     8341 aataagcctt atcttgagta aaaaaagcgc aacggattaa aatcgctaaa gttatgtctt
     8401 cgttaaaatt taaaaatcct accgcaccac cataaattcc acgatcgcaa tcttcaagct
     8461 cgctagtgat ctctaaagct cttattttag gagctccgct taaagttccc gctggaaaaa
     8521 ctgcttcaat cacatcaaaa atactcgcat cttctttcat attggcatac acttcactca
     8581 ctatgtgcat tacaaattta tttttaataa tagaaaaaag attttccact cttgtttgag
     8641 tgccaaattt agaagcatca tttcttgcta aatctacaag catcttatgt tcactaagtt
     8701 ctttttcatc acttaaaaga tctttttcta aagctaaaag atcacagtta ttttccaaat
     8761 ttctagttcc agcaataggg gctaaataaa tctctctttt tttaattttc aataaaaact
     8821 ctggagaaga acccaaaaca acaccatatt tacttggaaa ataaaacata taagcgcttg
     8881 gatttaaagc acttaaactc tcataataat caaaagcatt tacttgatgt ttgatacaaa
     8941 gttgcttact taagaccact tgaaaaatat ctccacttaa aagatattct ttggcttttt
     9001 cgcacatttt taaaaaatca tttttttcat cttctaaaga atttaaaatt tcaaaatcat
     9061 tt
//
LOCUS       DARBBO010000065         8986 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.065, whole genome shotgun sequence.
ACCESSION   DARBBO010000065 DARBBO010000000
VERSION     DARBBO010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8986
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.065"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            192..464
                     /locus_tag="SB854_001238"
     CDS             192..464
                     /locus_tag="SB854_001238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEG0957227.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            451..1002
                     /locus_tag="SB854_001239"
     CDS             451..1002
                     /locus_tag="SB854_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HEG0957228.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLMGFKSEIKT"
     gene            986..2269
                     /locus_tag="SB854_001240"
     CDS             986..2269
                     /locus_tag="SB854_001240"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEG0957229.1"
                     /translation="MKLKLENSFITDNTLECEKECFFLQTTQNAKFHAQALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFAAKIFTNITQ
                     DHLDFHGTFENYKEAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISTIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELVKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKKLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFTKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            2273..2584
                     /locus_tag="SB854_001241"
     CDS             2273..2584
                     /locus_tag="SB854_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEG0957230.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            2581..3675
                     /locus_tag="SB854_001242"
     CDS             2581..3675
                     /locus_tag="SB854_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEG0957231.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALGENLLAVLKQPNAKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNA
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            3672..4517
                     /locus_tag="SB854_001243"
     CDS             3672..4517
                     /locus_tag="SB854_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEG0957232.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKRL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNEKLAQMIQNL
                     IIQYL"
     gene            4528..6426
                     /gene="tkt"
                     /locus_tag="SB854_001244"
     CDS             4528..6426
                     /gene="tkt"
                     /locus_tag="SB854_001244"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEG0957233.1"
                     /translation="MNIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSAKKELLERLLNPDFNKIAYPDFK
                     GKDLATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHSMGDFVEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSAFVLSRQKLKALNEP
                     VFGDVKNGAYLLKESKEAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGIESFGESGKDKDVFECFGFSVSK
                     LVNFILSK"
     gene            6428..7537
                     /locus_tag="SB854_001245"
     CDS             6428..7537
                     /locus_tag="SB854_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEG0957234.1"
                     /translation="MNTNFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKITKEGLNSRFQILFELCEKNYQRLGKTKKSH
                     KNFSEYFIDLGKLSLELLKILIKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIVIPRVMALVVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVILTSTGI"
     gene            7538..8260
                     /locus_tag="SB854_001246"
     CDS             7538..8260
                     /locus_tag="SB854_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEG0957235.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNINKEDALALRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDENSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPHSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            8263..>8986
                     /locus_tag="SB854_001247"
     CDS             8263..>8986
                     /locus_tag="SB854_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEG0957236.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFIQLQGGSKNSKDLVSMQGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMADNISLSAQN
                     FNSSLKNIKESTMILKNFIKKAD"
BASE COUNT         3280 a         1305 c         1568 g         2833 t
ORIGIN      
        1 aagaaattct gcaacaatca tttagaaact taaatggaat ttttggtaac aaaaacttta
       61 cagcttatga tttaggattt agcatacaaa ataatgacaa acctttttaa tttatttaaa
      121 tttcaagcct taatttacct ttttttaaac acaatcacgc taaagtatat aaaaattttt
      181 aaggataaat tatgatgcct tttagtgatg aagagcttat aaatcctgtt aaagcaagtt
      241 tagaaaagag cttgcctatg cttgaacgtg atggcggagg gcttgaattt ttaggaatta
      301 aaaatgggat cgtttatgtc catttaatag gagcttgtaa aggctgtgca tcgagtggaa
      361 caacgctaaa atacggtctt gaaaggcaac ttaagattga tattcatccg gaaatcacta
      421 taatcaattt aaacggcgga gcagacgaat ttgcaaaatt ataaaaaact tggaattgaa
      481 catttttaca agaaagattt taaaactgca aaaatgtatt tttctatggc ttatgaaaaa
      541 cgcaaaaata aacgcttgct aaattttatc tgcctttgtg atcttgcttt aaaatctcct
      601 aaagaagctt ctttactttt tgatttttat atagaacatt acaaaatctc tagcattgat
      661 aaagacttag aagaaatttt aagtacaatt gaatttaaaa aacaagaaaa caaacaggaa
      721 aacgaatttg aagatgggca tgcgttaaat tatcaagatt ttttaaaaag cgaagaagaa
      781 cttggctttc aaaaaagttt tgaaaatatc attaacagca ctaaattagt tattgataat
      841 cgtgatgatt ttttagattt tttggaaaaa ttacttgata atggctataa agatatgact
      901 ttaaattaca tagaaaatgt tatgcctcat ttttgggcaa atgatagatt tatcaaactc
      961 caagaaaaac tcatgggatt taaaagtgaa attaaaactt gaaaattcat tcattacaga
     1021 taacacctta gagtgtgaaa aagaatgctt ttttttgcaa accacacaaa atgctaaatt
     1081 tcacgctcaa gccttagaaa aaggtgcaaa aatcattgat gtaaatgagt gtaaaaaact
     1141 tttaaaaatc gatgaaaaga ttcaaatcat aggaatcaca ggaaccaatg gcaaaaccac
     1201 aaccgcagca gcgatttatt ctatcttatt ggatttaggt tataagtgtg ggctttgtgg
     1261 gacaagagga gcttttatca acgatgaaca aatcgatgaa aaatccttaa ccacctcccc
     1321 tattcttaaa accttagaat acctacaaat agccactcaa aaaaaatgtg attttttcat
     1381 catggaagta agctcacacg cactcgttca aaaccgcatc gaaggcttaa attttgctgc
     1441 taaaattttt accaatatca ctcaagatca tttagatttt cacggtactt ttgaaaatta
     1501 taaagaagca aaagaacttt tttttaccga tgagagttta aaatttatca acaaagatgc
     1561 tttggctatt aaatttaatg tgcgtaatgc ttttacttat ggcatagaaa atcctgcttt
     1621 atatcaaatc aaagcttatt ctttagaaga aggcattagt actattgtaa caaataaaaa
     1681 tcaaactttt cacatagact cgcccttgct aggacttttt aatctttaca atcttctagt
     1741 tgctagtgct tgtgtgaatg aactcgtaaa gcctgattta aaagacttgg aaaaagctat
     1801 cagtggattt ggcggggttt gtggcagggt agaacaagta gcaaaaggtg tgattgtaga
     1861 ttttgctcat acgcctgatg gcattgaaaa agtgcttgac actcttaaaa ataaaaaact
     1921 catcgttgtt tttggagcag gtggagatag agataaaacc aaacgccctt taatgggaaa
     1981 aatcgtcgaa cattttgcaa aaattgctat cattacaagt gacaatccac gcagcgaaga
     2041 accaaaaacc atcatggaag aaattttatc aggctttact aaaaaagaaa aagttttaat
     2101 gatagaagat agaaaagaag ctataaaaaa agctttagaa ctaaaagaaa atgacgattt
     2161 agtcgttatt ttaggcaaag gtgatgaaac tactcaagaa attaaaggga taaaatatcc
     2221 ttttagtgat aaagtagttg ttaatgaaat tttaaaaaat caaggataat caatgtttga
     2281 aaatatggat ttttctaaaa tgggagaact tttaaatcaa gttcaagaaa aagcaaaaaa
     2341 tatagaacta gaacttgcaa atcgtgaatt tagtgccaaa agcggagcag gacttgttaa
     2401 agtaagtgcc aatggaaagg gtgaaattat cgatgttagc attgatgatt ctttacttga
     2461 agataaagaa tccttgcaaa ttttacttat ttctgcaatt aatgatgttt tggctatggt
     2521 tgcacaaaat cgttcaagta tggcgaatga tgttttaggc ggttttggag gtatgaaatt
     2581 atgaaaaaaa ttttaattat ttgcatgctt tttactttgt cttttggtat agaaagacct
     2641 aaatttgaag attttttagc aggttatgaa agaaataagg caagcatgct caactatgaa
     2701 ggaatgccag cttttgcact cggtgaaaat ttacttgctg tgttaaaaca gcctaatgct
     2761 aagcttaaca aatatgtaaa atacgatcca tttttaaatt tatatcttgt aagaactgac
     2821 tttagcctaa tccctactcc tatgggtgat gaagaaaaac ttactcgtaa tgattgggtt
     2881 ggaatttggg atcctaataa accttatata gggcatatta agtatttagc tcaaaatatt
     2941 gatgaaaaag atcaacttga ttttaattct aaaataggac ttttagggac tccatgctgt
     3001 gaaatgatgg ggattgcttt aaataatagc tcttttatag gcaatcgcta tttaaaacat
     3061 tttatgaaat ataacgatgt ttattggggg gatattggcg ttgattttgt tgttcgagaa
     3121 aataaaattt atgttaacaa tgtaagaaaa aatccacaat ttttaatcaa tgatcaagtt
     3181 ataagtgttg atggcttacc cgccaatgat ttaagaaaac tcaatgaaaa aattcttttt
     3241 gcagatcgcg gaagcactct ttattttcaa gtgttgcgtg ataatatgga tttaaatatt
     3301 tctactgaag tttttgcaaa agatttgagc aaatttaacc ttcctgattc taaaccaaaa
     3361 ccaaaaatta caaatttcac aagcaatctt ggtttaacgg ttaatgctag tcttgttgta
     3421 actaaaatag atccaaaatc aaaagcatca aatgcaggat ttatggtagg agataaaatt
     3481 ttacgcgtta ataatattat tttaaataat tttaaagaat tacaaaatat tttaagtgct
     3541 ggtaatgact ttagcatctt aattgaacgc aaaagtacta aattaccttt atcaaatttc
     3601 aacaatgaac taggcggaaa tgccaactca ggtggcgatg gtaaatttca atttttcata
     3661 aggcttacta agtgaattta aaagaacttt ttatccatca cttagaaaaa aatctaccca
     3721 aagttgaaag ctttcatcct tttttcaatg aagctttagc acttatgtta aaagcaggag
     3781 gaaagcattt tcgcgcacaa ttgcttttaa gcgtagtgca aagcaataaa cctgaacttt
     3841 taaatcaagc tttagatgta gctttagctt tggaatttat ccatacttat tcactcatac
     3901 acgatgattt acccgctatg gataatgcgg actttagacg aggaattcca accttacaca
     3961 aaagctacga tgaaactaca gccatcttag taggtgatgc tttaaatacc gaagcttttt
     4021 tagttctaag tcatgctcat ttaaaagatg aaatcaaaat caaactcatc aaaacccttg
     4081 cctttaatgc aggacttaat ggaatggtca taggacaagc tattgattgt ttttttgaag
     4141 acaaaagact gagtttaaat gaacttgagt ttttgcatac acataaaacc gcaagattga
     4201 tcgccgcagc tttaaaaatg ggttgtgaaa tttgcgaact taacaacgaa gaaagcaacc
     4261 aaatttacaa acttggttta aaactaggac tgatttttca aatcaatgat gatattatcg
     4321 atgtaactac aagtcaagaa caaagcggaa agcctaccaa caacgatatt cataaaaatt
     4381 cttttgtcaa tttgcttgga cttgaacaag ccataaaaac aaaagaaaat cttcttagtg
     4441 aatgcgaaca agacttagaa aaacttaatg aaaaactcgc acaaatgata caaaatttaa
     4501 taattcaata cttataaagg caaaataatg aacattcaaa ttttacaaga acaggcaaat
     4561 actctaagat ttttaagtgc tgatatggtg caaaaagcaa actcaggaca cccaggtgca
     4621 cctttgggct tagcagatat tttaagtgtt ttaagttatc atttaaaaca caatcccaaa
     4681 aatccaactt ggctaaaccg agatagactt gtattttcag gcggacatgc aagtgctttg
     4741 ctttatagtt ttttacattt aagcggctat gacttaagct tagaagatct taaaaatttc
     4801 cgccaacttc attctaaaac ccctggacac cctgaaattt caactcttgg agtagaaatc
     4861 gctacaggcc ctttaggaca aggcgttgcc aatgctgtag gctttgctat ggcagcaaaa
     4921 aaagcacaaa atttgctagg cagtgattta atcgatcata aaatttattg tctttgcgga
     4981 gatggggatt tacaagaagg catttcttat gaagcttgtt ctttagcagg acttcacaaa
     5041 cttgataact tcatacttat ttatgatagc aacaatatct ctatagaagg cgatgtaggt
     5101 ttagccttta acgaaaatgt aaaaatgcgt tttgaagcac aaggatttga agttttaagt
     5161 ataaatggac acgattatga agaaatcaat aaagccttag aacaagctaa aaaatccaca
     5221 aaaccttgtc ttatcatcgc aaaaacaact atagcaaagg gtgcaggaga gcttgaaggc
     5281 agtcataaaa gccatggcgc acctttgggt gaagaagtga ttaaaaaagc caaagaacaa
     5341 gcaggctttg atccaaatat cagttttcat atcccacaag caagcaaaat ccgctttgaa
     5401 agtgctgtag aacttgggga tttagaagaa gcaaaatgga aagataagct tgaaaaaagt
     5461 gctaaaaaag aacttttaga aaggctatta aatcctgatt ttaacaagat agcttatcct
     5521 gattttaaag gaaaagatct tgctacaaga gatagtaatg gtgaaatttt aaatgtttta
     5581 gctaaaaatt tagaaggatt tttaggtgga agtgcagact taggcccttc gaataaaaca
     5641 gaacttcaca gtatgggaga ctttgtagaa ggtaaaaata tccattttgg tatcagagaa
     5701 cacgctatgg cagcgattaa caatgctttt gcaagatatg gaattttctt accattttcg
     5761 gcaacttttt tcatctttag cgagtactta aaacctgccg caagaatagc agctctaatg
     5821 aaaatcaaac attttttcat tttcacacac gatagcatag gcgtgggcga agatggacca
     5881 acacaccaac ctatagaaca acttagcact tttagagcta tgccaaattt tttaaccttt
     5941 agacctgctg atggggtgga aaatgtcaaa gcttggcaaa tagccctaaa tgctgatatt
     6001 ccgagtgctt ttgtgctttc acgccaaaaa ctcaaagctc taaatgaacc tgtttttgga
     6061 gatgtaaaaa acggagcgta tttactcaaa gaaagcaaag aggctaaatt tacacttcta
     6121 gcaagtggaa gtgaagtttg gctttgtcta gaaagtgcaa acgaacttga aaaacaaggt
     6181 tttgcttgta atgttgtttc catgccttgt tttgaacttt ttgaaaaaca agataaagct
     6241 tatcaagaaa gattgttaaa aggtgaagtt ataggtgttg aagcagcaca ttctaatgaa
     6301 ctttataaat tttgccataa agtatatggc atagaaagtt ttggagaaag tggtaaagac
     6361 aaagatgtgt ttgaatgctt tggatttagc gtttcaaagc ttgtaaattt tatccttagc
     6421 aaataaaatg aatacaaatt tcaaatttca aaataacact ctttttatct ttggaatttg
     6481 ggataaaaca agtatttata agttaaaaat aaaagatttt ttagctttga tccaaagcaa
     6541 ggaagtgatt tttgatttta aagatctaaa agcaatcgat accgctggag tgagattttt
     6601 ccttgcttta gaaaatgacc ttaaagataa aaatattaaa atcaccaaag aaggcttaaa
     6661 ttcacgcttt caaatcctgt ttgaactttg tgaaaaaaac taccaaagac taggcaaaac
     6721 aaaaaaatca cataaaaatt tcagtgaata ctttatcgat cttggaaaat taagtttaga
     6781 acttttaaaa attttaataa aattcatcaa tttcacagga gcttttttca caagtctttt
     6841 tttatgcctt aaaaatccta aaaattttcg ctttattgct tttttatatc atatagaaaa
     6901 ttctgctttt aaagccttac ctatagttat tttaaccgct cttttagtag gagtggtttt
     6961 agcctatcag gctgcttacc aactcgcaca atttggagcc aatattttca tagtggattt
     7021 gatgggaatt tcagccacta gagaacttgc acctttaatc gctgccatag tgatcgcagg
     7081 aagaagtgca agctcttata ccgcacaaat tggggtgatg aaaattactg atgaaattgc
     7141 agctatgaat actatgggtt ttcgttcttt tgaatttatt gttattccac gtgtcatggc
     7201 tttggtagta gctatgcctt taatcgttgc cattagcgat gcaatcagta ttataggtgg
     7261 aatgatggtt gcaaaattaa atcttgatat ttcttttgcc gaatttttaa gacgctttag
     7321 agaagctgta gatataaaac atatctttat aggacttgca aaagcaccta tttttggatt
     7381 tttgatagga cttattgctt gttttcgtgg ttttgaggta aaaaacacta cacaaagtat
     7441 aggaatttat acaacaaaaa gcgttgtaaa tgctattttt tgggtgatag cttttgatgc
     7501 tttattctct gttattttaa cttctacagg aatttaaatg gttattaaag cacaaaatat
     7561 cattacaaaa tttggagaaa aaattgtcca tgatggcgta agttttgaaa tcaaaaaaaa
     7621 cgaaattttt ggtattttag gaggtagtgg aagtggaaaa tccgtccttt taaaacaaat
     7681 gcttatgctt gaacattttg atggtggaga atatgaaatt ttaggctata aacttaaaaa
     7741 tatcaacaaa gaagatgcac ttgctttgcg taaaaaatgg ggtgtggttt ttcagtttgc
     7801 tgcacttttt agctttttta atgtttatga aaatatcgct attcctttaa aagaatacac
     7861 tcatttagat gaaaatagca tacaagaact ggttttaatg aagctaaaaa tggtaggctt
     7921 aaacgaaagt gttttaaaac aatttccaag cgaacttagt ggcggtatgc aaaaaagagt
     7981 ggcaattgct agagctttag cacttgatag taaattgctt tttttagatg aacctacttc
     8041 aggacttgac cctcatagta gtcgtgaatt tgacgatttg gttttagagt taaaaaaaag
     8101 ttttgatcta aatatcattt tggttacaca tgataaagaa agtatgaaaa atttactcga
     8161 tcgttttatc attttagaaa ataaaaaagt tggattttgc ggcacttatg aagaattacg
     8221 cttgcaaaat gaacgacttt ttaaaagatt tatggagtaa aagtggaaaa tagagcaaat
     8281 tatttttttg taggactttt tgtttttgga gtattttttg caagccttgg tttcatactt
     8341 tggcttggtg gatactctaa agaagaaagt tttaagtatt atgaaattca cacacaagaa
     8401 tccgttgcag gacttggcat aaaagcaccc gtaaggcttt tgggcgtgga agtaggtagc
     8461 gtagaagaaa tcagcattta caatcaagat gaactcggcg ttaacatacg catcaaggtc
     8521 aaaaacaata cccctataaa agaagatact tttgctactt tgcaacttca aggtatcaca
     8581 ggacttaaat ttatccaact tcaaggcgga agtaaaaata gtaaagatct agtatctatg
     8641 cagggaaaac ttccagtcat tccttttaaa gaaagttttt tagcgaccat agatagacaa
     8701 agtgaacata ttttttcttt ggttaaaacg gccgatgata aatcaaaaga acttttaagc
     8761 gaaaaaaatc ttaaaaatct agaaatcctt ttgcaaaatc tagcagaatt aagtgcaaat
     8821 ttaaacgcta attctaaaaa tttaagtctt aatctttcaa acgcaagttt aaaaatagga
     8881 aaaatggctg ataatataag ccttagtgcg caaaatttca actccagtct taaaaacata
     8941 aaagaaagca caatgatttt aaaaaatttc ataaaaaaag ctgatg
//
LOCUS       DARBBO010000066         8729 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.066, whole genome shotgun sequence.
ACCESSION   DARBBO010000066 DARBBO010000000
VERSION     DARBBO010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8729)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8729)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8729
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.066"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..685
                     /gene="ubiE"
                     /locus_tag="SB854_001248"
     CDS             <1..685
                     /gene="ubiE"
                     /locus_tag="SB854_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HEG0957237.1"
                     /translation="EMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSLYLKKDLKI
                     ADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEFIKAGAQNL
                     PLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKGGFIAACRD
                     FYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKKEFILELKNAGFEMLDYKSFSFGV
                     SSMFIAKKL"
     gene            682..1845
                     /locus_tag="SB854_001249"
     CDS             682..1845
                     /locus_tag="SB854_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEG0957238.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGDFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            1855..2931
                     /gene="serC"
                     /locus_tag="SB854_001250"
     CDS             1855..2931
                     /gene="serC"
                     /locus_tag="SB854_001250"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HEG0957239.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNLALNGVCEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFDHIPRVEFSDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQVKTLCEFMKEFQGKYA"
     gene            2928..3278
                     /locus_tag="SB854_001251"
     CDS             2928..3278
                     /locus_tag="SB854_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEG0957240.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGANKGDLIQIQIWLANMQDFDAMNEIYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3275..4249)
                     /locus_tag="SB854_001252"
     CDS             complement(3275..4249)
                     /locus_tag="SB854_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketoacyl-ACP synthase III"
                     /protein_id="HEG0957241.1"
                     /translation="MLKASLKSIASYIPEKILSNADLEKMVDTTDEWITRRTGIKERR
                     IASENENTSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIIGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(4242..5228)
                     /gene="plsX"
                     /locus_tag="SB854_001253"
     CDS             complement(4242..5228)
                     /gene="plsX"
                     /locus_tag="SB854_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEG0957242.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNENATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIVNKTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKPSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINKFIENELGKYNA"
     gene            complement(5234..5380)
                     /gene="rpmF"
                     /locus_tag="SB854_001254"
     CDS             complement(5234..5380)
                     /gene="rpmF"
                     /locus_tag="SB854_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEG0957243.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            complement(5404..5757)
                     /locus_tag="SB854_001255"
     CDS             complement(5404..5757)
                     /locus_tag="SB854_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957244.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EVYLSDYFYCINCNN"
     gene            complement(5758..6171)
                     /gene="ndk"
                     /locus_tag="SB854_001256"
     CDS             complement(5758..6171)
                     /gene="ndk"
                     /locus_tag="SB854_001256"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEG0957245.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIEFFFKPNEIC"
     gene            complement(6284..6568)
                     /locus_tag="SB854_001257"
     CDS             complement(6284..6568)
                     /locus_tag="SB854_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEG0957246.1"
                     /translation="MAVKITDICIACGSCIDECPVNAIVDDTNNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            6776..8200
                     /locus_tag="SB854_001258"
     CDS             6776..8200
                     /locus_tag="SB854_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEG0957247.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEVTPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSLVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIIPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALEHFEKISPDYAKGIKKALEK"
     gene            8257..8727
                     /locus_tag="SB854_001259"
     CDS             8257..8727
                     /locus_tag="SB854_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HEG0957248.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNECENLKIMIEAGLNINLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNFLKKISLKILKFIKKF"
BASE COUNT         3061 a         1277 c         1424 g         2967 t
ORIGIN      
        1 agaaatgttt aatcaaattg cacctactta tgataaggcg aatagaattt taagctttgg
       61 agctgatgta gcgtggcgca aaaaagcttg tcaaagagtg atgagtttgt atttaaaaaa
      121 agatttaaaa atcgctgata ttgcctgtgg cacaggggat atgatagaga tttggcaaga
      181 gagtgcttta aaaatggaaa aaaatatttt aaatattaaa ggtattgatc caagtagtgg
      241 catgctaaat gttgcaaaag aaaaatttcc aaatgtcgaa tttataaaag caggggcgca
      301 aaatttacct ttagaaagtc aaagtttaga tattttaagt attagttatg gcattcgcaa
      361 tgttgtagaa agacaaaaag ccttaagcga atttgctaga gtacttcaaa aagatggtat
      421 tttggtagtt ttggaattta caaaaagaga aaagggtgga tttatagcag cttgtagaga
      481 tttttatctt aaaaatattt taccaagtat aggtgggata atcagtaaaa ataaaagtgc
      541 ttatgagtat ttgccaaact ctattgaagg atttttaagt aagaaagaat tcatcttaga
      601 acttaaaaat gctggttttg aaatgcttga ttataaaagt tttagctttg gcgtgagttc
      661 aatgtttata gcaaaaaaac tatgacacca acagaattaa atcttaaagc aaaggcttta
      721 ttagaaacac attttgatga tatagtttta agtggagaaa tttcaaaaat tactttgcat
      781 ggttcagggc attggtattt tgatttaaaa gatgaaagat caagcattgc ttgtgctatg
      841 tttaaaggag ctaatttaaa agtcgggttt aaaccagcgg tgggggattt tttagagctt
      901 tgtggaagtg tgagtttata tcctgaaagc ggtcgttatc aatttatcgc tactagtatg
      961 aaaaaagcag gttttgggga tttggaagca cagtttttgg ctttaaaaga gcgtttgcaa
     1021 aaagaaggac tttttgatcc acgctttaaa aaatctttgc caaaatttcc taaaaaagta
     1081 ggtattataa cttcaaaaac ttctgctgct ttgcaagata tgttaaaact tattcatcaa
     1141 aaagaatatt ttttggcaaa aatttatatt tttgatgctt taactcaagg aaataatgct
     1201 cctttttctc ttatacaagc tttaaaaaaa gccgatgata tggatttaga tgttcttatt
     1261 atagcacgtg gtggaggaag cagggaagat cttttttgtt ttaatgatga aaatttagca
     1321 agagagattt ttaaagcaaa aactcctatt atttcagcca taggacatga gattgattat
     1381 gttattagtg attttgttgc agattttaga gctccaacgc cttcagctgc tatagatact
     1441 ttgttttatt ctaagttgga tatagagcaa agtttggatt taatggaaga aaaattaatg
     1501 caactttgga attataaaat acaaaattat gaaaatttgc ttttaaattt aagcaaattt
     1561 ttcaaattta attctttgcc aaaaataata gatgaaaaaa taaaacaaag ccataatata
     1621 gaaaagcaat taaatcatct attggcaaat caaatgcgtt ataatgaatt aaaattagat
     1681 aaattgcaaa atgcttattt gcaacatgag aattttttta ataaaagcaa aaagtttatt
     1741 tgtatcagaa aaaatggtaa aatagcaaat ttagaagatc ttaagagtga tgatatcgtt
     1801 attttaagtt ctcaaacttc tcaaaaagaa gcaaaaattt tataaggata gattatgaga
     1861 aaaatcaatt tcagtgcagg gccatcgact ttacctttag aaattttaga gcaagctcaa
     1921 aaagaactct gtgattatca gggtaggggt tattctataa tggaaatttc tcaccgcaca
     1981 aaagtatttg aagaagtgca ttttggagca caagagaaag ctaaaaaact ttacgagtta
     2041 aatgatgatt atgaagtatt atttttacaa ggtggagcaa gtttgcaatt tgctatgatt
     2101 cctatgaatt tagctttaaa tggggtttgt gaatatgcaa atacaggagt ttggacaaaa
     2161 aaagcgatta aagaagcaca aattttaggt gtcaatgtta aaaccgtagc aagtagtgag
     2221 gaaagtaatt tcgatcatat tcctagagtg gaatttagcg ataatgctga ttatgcttat
     2281 atttgttcta acaatactat ttacggcact caatatcaaa attatcctaa aactaaaact
     2341 cctttgattg tggatgcatc gagtgatttt ttttctagaa aagtagattt ttcaaatatt
     2401 gctctttttt atggcggagt gcaaaaaaat gctggaattt cgggtttaag ttgtattttt
     2461 atccgtaaag atatgttaga aagatctaaa aataaacaaa ttcctagtat gttaaattat
     2521 ttgactcatg ctgagaatca gtccttgttt aacacgcctc caacctttgc catttatatg
     2581 tttaatcttg aaatggattg gcttttaaat caaggtgggc ttgataaagt gcatgagaaa
     2641 aattctcaaa aagctactat gctttatgaa tgtattgatt taagtaatgg attttataaa
     2701 ggacatgcag ataaaaagga tagatcttta atgaatgtga gttttaatat tgctaaaaat
     2761 aaagatttag agcctctttt tgtaaaggaa gccgaagaag ctggaatgat aggacttaaa
     2821 ggacatagaa ttttaggagg aattcgtgca agtatttata atgcgcttaa tttggatcag
     2881 gtaaaaacct tgtgtgaatt tatgaaagaa tttcaaggaa aatatgcatg ataaagcgtt
     2941 ttgatgagtg cgatagaatg tcgcaaatta ttgtttttga taaatatttt aagactgcag
     3001 gacaagtggc ttttgaacct agcggagata ttaaaaaaca aactaaagaa gcgcttgcag
     3061 aacttgatgc tttgtttgaa aaaataggcg caaacaaagg agatttgatt caaattcaaa
     3121 tctggttagc taatatgcaa gattttgatg caatgaatga aatttatgat gcttggatta
     3181 aaaattatcc taaacctgtt agagcttgtg taggaagtgc tttagcagag ggttatttgg
     3241 tagaaattca agcttttgga aagctaagag agaattaaaa attctctcct ccaaatttta
     3301 aaagcgcaga tccccaagta aaaccaccgc caaaagcatc tagtaagatc agatttcctt
     3361 ttttaagtcg accttcttca taggcatcat tcattgccat aggtatagaa gcagctgaag
     3421 tattgccata tttttgtaca gtgatcacac atttttcatc gcttagattg agtttttctt
     3481 ggacggcttt aatgatgcgt agattagctt gatgaggaat aaaaagatca atttcttgtg
     3541 ctaaaatgtt atttttagct aaaatttcta caacatcatt actaagcgtg tttactgcta
     3601 ttttaaaaac ttcattgcct ttcatttgca tagaaagtgt ttgacatagg cttgattttt
     3661 gcgatctttg agtcattaaa agatctccat aattaccatt gcttgcagta tgtacatcaa
     3721 ggatatgatt ttcattatcc aaacttacaa ctccagcacc tgcaccgtct ccaaagagta
     3781 tgcaaatact tctgtcattg taatccataa ttgaacttgt tttttcagct cctatgatta
     3841 aaacattttt tttcaaacca ctttctacta aggctttagc ttgttcaagc aaatagataa
     3901 aaccagaaca agctgctgaa atatcaaaag cgctaatatt tacaagtcct aaatttgaag
     3961 caattttaca agccgttgaa ggcatagtaa aataatcagg acttaaagta gctacaagaa
     4021 tcgcatcaat atcttcaggt tttaaatttg ctctttctat ggcttttaat gcagcttttg
     4081 tgcccaaatc gctagtattt tcattttcac tagcaatgcg cctttcttta atacctgtgc
     4141 gtctagtgat ccattcatcg gtggtatcta ccattttttc aagatcagca ttgcttaaaa
     4201 ttttttctgg aatataagaa gctatacttt taagactggc tttaagcatt gtatttccca
     4261 agttcatttt ctataaattt attgatatga gattggctaa aatttatagc ttgaaaaatt
     4321 gcatttttaa tagctctaga atcgcttttt ccatgactta tgatcacgca gccattaact
     4381 ccaagaaggg gtgctccgcc atattcttgc caatctgtgt gtttttttaa ttttttaaaa
     4441 gatggcttca taagtaaagc acctatttta gaaataaaag attgctttac ttcgtttttt
     4501 agaagttgaa aaatagctgt tgccacacct tcacaagcct ttaagataac atttccatca
     4561 aaaccatcgc agactaaaac atctatttca ccattgaaaa tatctctacc ttcagcatta
     4621 cctataaaat ttggaatttt tttcataagc tgatgacttt ctttggtaag ttcattacct
     4681 ttgcattctt cttcaccatt agaaagtaaa gcaaggcgtg gtttttgaat ttgcatgatt
     4741 tctctagcat aaacttcacc cattatggca aattgaaata aattttcagc tttacaatct
     4801 gtattagctc caacatccaa aagtaaagtt ttgttaacga tatttggcat taaagtggca
     4861 atagcaggtc ttgaaatacc tttaagtctt ccaagcctta aggtagccaa agacatactt
     4921 gctccactat gacccgctga aactacagca tctacttttt tttcttttaa taaattaata
     4981 gctttgtata tggttgtttc tttatttttt aaagcatctg tggcattttc attcatcgaa
     5041 aaaatttcac tagcttcttc gtattgtata tattgttcta atttttttgg tattaaaggt
     5101 tttagaattt tagaatttcc cactaagata gcgttaaaag gttttgcttc tagtgccttt
     5161 aaaacgcctt ctataatggg tttttctcca aaatcaccac ccattgcatc aatggcaatg
     5221 ttaatcattg attttaatat tccttagttg ttggattcgc acggtgaggc attttgtagc
     5281 ttccatcttt gtcttttata ggcataggaa gactaacttt atagtgagtt ctgcgtttag
     5341 ctgcacgagt tttgctcact cttctctttg gtactgccat tttttctcct ttataaaatt
     5401 taattaatta ttgcaattta tgcaataaaa ataatcactc aaataaactt caagctcgct
     5461 aatagcaact tctattaaat caatatgtcc atcgaaaaat tctatagtat tgctcaattc
     5521 gtttgcttca tctttaaaaa taccatcact tgcaaaaagt tctaaatttt ctttaatttc
     5581 aagttctaac tcagttccac aactatcaca aggtctatag ataaaacctt gcataatagc
     5641 atttatttta acaagcttag gatttatttt tactaaattt ccctcaaaaa tcatattttc
     5701 aagattaagt ttaaaaggat attcctttgt attaatctta gaaaaaggga ttttcattta
     5761 gcaaatttca tttggtttaa agaaaaattc aatttctatt tttgcatttt ctaagctatc
     5821 gcttccatga acagcattag cgtcaatact ctcagcaaaa tcagccctaa ttgttcctgc
     5881 tttagcttct ttaggatttg ttgctcccat taaatctcta tttttcaata cagcaccttc
     5941 tccttctagt atagaaacaa caacaggacc gctaatcata aattcaacca agtctttaaa
     6001 aaaaggtctt tctttatgaa cagcataaaa attttcagct tgttctttac taagttgaac
     6061 ttttttcatt gcggcgattc ttaatccatt gctttcaaaa cgatctaaaa tttttcctat
     6121 aacacctttt ttaacagcat caggtttaat tatagataaa gttttttcca tctttgtaat
     6181 aactccttat tttaataaag cttaaaatta tacttgaatt tgtttaaaga aagttaaatt
     6241 aaaagaaaaa gctaggaatc tctagctttt taatttttta aaattatgca aaaactggag
     6301 tgtccccact tctcatatca gcaccaatat tatcacgact tggttgtcct gattctacag
     6361 cactccaaac tatacatcca tctgttgggc aagcactagc acaagctggt tgatcattat
     6421 gtcctacgca ttcaacgcat ttgtttgcat agacataata tctatcttca ccttctggat
     6481 tgttagtatc atcaacgata gcattcactg gacactcatc aatacaagaa ccacaagcaa
     6541 tacatatatc tgtaattttt acagccattt tttctcctta tttaatatta agatttaaaa
     6601 gattttagca taaaattctt aaataaagta aattttgata atcaaaaatt taccttattt
     6661 gataataatt ataacttttt taaattttta atattatctt agatatttaa aaaaaaataa
     6721 agatttaaac gatataattt cgttatcaat aaaatttatt atttaggaga aaacaatgaa
     6781 aaaattgact aacgattttg gaaacattat agccgataac caaaattcat taagcgcagg
     6841 cgcaaaagga cctttactta tgcaagatta tcttttgctt gaaaaacttg ctcatcaaaa
     6901 tagagaaaga attccagaaa gaaccgttca tgctaaggga agtggagctt atggcgaaat
     6961 aaaaattaca gcagacttaa gtgcttatac caaagctaaa atttttcaaa aaggcgaagt
     7021 tactccatta tttttacgct tttcaacagt agcaggtgaa gcaggtgcag cagatgctga
     7081 acgcgatgtg agaggttttg ctattaaatt ttacaccaaa gaaggaaact gggacttggt
     7141 aggaaataac actccgacat tcttcatccg tgatgcttat aaattccctg attttatcca
     7201 tactcaaaaa agagatccaa gaacacattt aagaagcaat aatgctgctt gggatttttg
     7261 gagtttatgt cctgaaagct tacatcaagt aaccattctt atgagtgata gaggaattcc
     7321 tgcaagttat cgtcatatgc atggatttgg aagccatact tatagtttta ttaatgataa
     7381 aaatgaaaga ttttgggtga aattccattt taaaacacaa caagggatta aaaatcttac
     7441 caaccaagaa gctgcagagc ttatagcaaa ggatagggaa agtcatcaaa gagatctcta
     7501 taatgctata gaaaataaag attttccaaa atggaaagtt caagttcaaa ttcttgctga
     7561 aaaagatata gaaaagcttg gatttaatcc ttttgattta acaaaaattt ggcctcatag
     7621 tcttgtacct ttgatggata taggcgaaat gattctaaac aaaaatcctc aaaattattt
     7681 taatgaagtt gaacaagctg cctttagtcc aagcaatatc attcctggaa ttggctttag
     7741 ccctgataaa atgttgcaag ctagaatttt ttcatatcct gatgcacaaa gatatagaat
     7801 aggaactaat tatcatcttt taccagtaaa tcgtgcaaaa agcgaagtga atacttacaa
     7861 tgtcgctggt gctatgaatt ttgatagtta taaaaatgat gctgcttatt atgaaccaaa
     7921 cagctatgat aatagcccaa aagaagacaa aagctatctt gaacctgatt tagtcttaga
     7981 aggcgtagca caaagatatg ctccactaga taatgacttt tatactcaac caagagcttt
     8041 atttaatctt atgaatgatg atcaaaaaac tcaacttttt cataatatcg ccgcttctat
     8101 ggagggagtt gatgaaaaaa ttatcactag agctttagaa cattttgaaa aaatttcacc
     8161 tgattatgca aaaggaatta aaaaagcttt agaaaaataa tttttacttg ccacttttgg
     8221 tggcaaacta aagattataa taattaagga aaaacaatga caactcttag tttagaagaa
     8281 gaaaaaagat ttgaagagct ttgcaaaatg gcttttaatt ttgcaagaaa taatgaatgt
     8341 gaaaatctta aaatcatgat agaagcaggt ttaaatataa atttaaaaac tcataaaggc
     8401 gatagcttgc ttatgcttgc agcttataat aattcttatg aaagcgctaa aatgctttta
     8461 gaaaaaggtg caaaagtaga tgaaaaaaac gatcgtggac aaaccccatt agcaggagtt
     8521 tgttttaaag gatacttacc tatgtgtgaa cttttagtta aatatggagc aaatattgat
     8581 gaaaacaatg gtttaggaat gacaccttat acttttgcta ttatgtttgg acgcaaagat
     8641 gtggcagaat ttttactcaa aaaatctaaa aataattttt taaagaaaat aagcctaaaa
     8701 atactaaaat ttatcaaaaa attttagtt
//
LOCUS       DARBBO010000067         8680 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.067, whole genome shotgun sequence.
ACCESSION   DARBBO010000067 DARBBO010000000
VERSION     DARBBO010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8680)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8680)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8680
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.067"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..105)
                     /locus_tag="SB854_001260"
     CDS             complement(<1..105)
                     /locus_tag="SB854_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEG0957249.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYKIFKECLKI"
     gene            188..745
                     /locus_tag="SB854_001261"
     CDS             188..745
                     /locus_tag="SB854_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEG0957250.1"
                     /translation="MKIKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISVKKENVVLNFNDEGKAILFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            745..1611
                     /gene="ftsY"
                     /locus_tag="SB854_001262"
     CDS             745..1611
                     /gene="ftsY"
                     /locus_tag="SB854_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEG0957251.1"
                     /translation="MFNFFKKGLAKTLENIVGIKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAS
                     AYLDTLLDPIFE"
     gene            1611..2951
                     /gene="radA"
                     /locus_tag="SB854_001263"
     CDS             1611..2951
                     /gene="radA"
                     /locus_tag="SB854_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEG0957252.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAEQIKVL
                     KELVQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIIDSIQTLYSNKVTSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLEIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIVPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            3020..3700
                     /locus_tag="SB854_001264"
     CDS             3020..3700
                     /locus_tag="SB854_001264"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEG0957253.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHSP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            3697..3888
                     /locus_tag="SB854_001265"
     CDS             3697..3888
                     /locus_tag="SB854_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957254.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNENKLR"
     gene            complement(3910..4758)
                     /gene="metF"
                     /locus_tag="SB854_001266"
     CDS             complement(3910..4758)
                     /gene="metF"
                     /locus_tag="SB854_001266"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HEG0957255.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEVASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHHLKTKVNAGTD
                     KLITQLFYDNEDFYAFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNALALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4768..7032)
                     /gene="metE"
                     /locus_tag="SB854_001267"
     CDS             complement(4768..7032)
                     /gene="metE"
                     /locus_tag="SB854_001267"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEG0957256.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALVQ
                     KYGFAKDKILFAGLINGKNIYTNDYAKSLKLIKELQKYTQNIILNTSCSLLHVPYSTE
                     FESKLDSNYLKLFSFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSADVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRIKPITLAWSKFAQNLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLNWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFSDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRTYEEVIASL
                     KNLVTATQKIREQL"
     gene            complement(7044..7814)
                     /locus_tag="SB854_001268"
     CDS             complement(7044..7814)
                     /locus_tag="SB854_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEG0957257.1"
                     /translation="MTLFTKAFCVATLFTGFAWTNEELKVGSSITPHADILRFIKSAL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKEFHPREGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFAELKDAQLTRSLDDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSDEVKKFIEEKYQGALIPTF"
     gene            complement(7825..>8680)
                     /locus_tag="SB854_001269"
     CDS             complement(7825..>8680)
                     /locus_tag="SB854_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="isopenicillin N synthase family oxygenase"
                     /protein_id="HEG0957258.1"
                     /translation="LFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGSKDY
                     REQLDIGTERDALNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLK
                     AFAQALDLPNNAFDKLYGENSYEHCKIIHYPKSSKNITQGVGSHKDGGLITFVFQEKQ
                     SGFEAFIDGKWLSIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFL
                     GVQLDKDIPIFKLNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSD
                     LIEKFSFA"
BASE COUNT         2755 a         1265 c         1501 g         3159 t
ORIGIN      
        1 tattttaaga cattctttaa atattttata atcttgtttg aaatttagtt ttgaatgttt
       61 gaaaaggcgt attttttgca atgctctaaa atctgttttt tccattaata tgtctttaaa
      121 aaaatattat cttatgtatg ttataatttt agcattttta taaagaagaa taaaggattg
      181 ataaataatg aagattaaaa aaatactttt actagtggca atatcttgtt tgtttgttgc
      241 ttgtagcaat gataaagaaa aacagcaaaa tgatgtaaat ttaagcaccg aggcaagtat
      301 aaatcaaagt gatgatatga attttaaact taatttgatt gatggaggat caatttcagt
      361 taaaaaagaa aatgtcgttt taaatttcaa cgatgaaggt aaggcaattt tgtttgtatt
      421 ttttaccact tggtgtaccc cttgcattgc tgaaatccct catcttaata aattacaaga
      481 aaagtataat aatgatttta atatagttgg ggttttatta gaagataaat ctaacgatga
      541 gattcaaaaa tttatagaac agcataaaat atcttataaa gtcgctaatg gtgaaaataa
      601 ctatctttta gctaaagctt taggtggggt aaatggaatt cctaccatgt ttctttacaa
      661 taagcattct aaattgatta atcagtattt agggcttatt cctgaagaaa tgctagaaat
      721 cgatatacaa aaggctatac tttaatgttt aattttttta aaaaaggact tgcaaaaact
      781 cttgaaaata ttgttgggat taaaggagag aataaaaaga taaccaaaga tttgcttgaa
      841 gaaattttgc ttgaagcaga tgtaagttat gaaatagttg aagagataat ttattattta
      901 ccacctcaaa atgaagtaaa aaaagaagat ttaaagcgtg ttatgggttc ttattttctt
      961 tatgaaaaaa aagaaaccaa tcaagaaaaa ccttttgtag agcttatttt aggagtaaat
     1021 ggagcaggaa aaacaacaag tattgccaaa cttgcttatt tatataaaaa ccaaaatcaa
     1081 aaagtgattt taggagcgtg tgatactttt agagcaggtg cgattgaaca attaaaactt
     1141 tgggcgcaaa aagtggatgt agatatagtt ttaactgcac aagggcatga tccttcagcg
     1201 gttgcttttg ataccatttc taaagcaaaa gcaaaggatt ttgatagagt tattatcgat
     1261 acagcagggc gtttgcaaaa tcaaaaaaat ttagcccatg agcttgaaaa aattgtgaga
     1321 atttcaaaca aagctttaga aggtgcaccc catagaaaaa ttttagtttt agatggaaca
     1381 cagggaaatg ctggaatttt acaagctaaa gcttttaatg agcttgtaaa acttgatggt
     1441 gtgattatca caaagcttga tgggacagct aaagggggtg cactttttag tatagcaaga
     1501 gagcttgagc ttcctatttt ttatgtaggc gtgggtgagc aaatgacgga tttgcaagaa
     1561 tttaatgcaa gtgcttattt agatacttta ttagatccta tttttgaata atggcaaaaa
     1621 ataaagcact ttttgaatgt caagcttgtg gaaatcaaca aagcaaatgg cttggaaaat
     1681 gtcctgattg tggagcttgg gatagttttg tagaattaaa agctgagcaa attaaagttt
     1741 taaaagagct tgtgcaagtt agtatgaaaa caagtgaagc tgtttgtatt gaagatgtgg
     1801 aattagaaca ttttacaaga tacagcacag atgataatga gcttgatttg gttttaggcg
     1861 gagggcttgt tgaaggttct ttagtgctta taggcggaag tccaggtgtg ggaaaatcta
     1921 cgcttttgtt aaaaattgct tcaaatttag ccaaacaggg taaaaaagtg ctttatgtca
     1981 gtggcgaaga aagtaaagct cagattaaat taagagctga tcgccttgag gctaatactc
     2041 cgaatttatt tttacttact gaactttgcc ttgaaaatat tttagaagaa ttacataaaa
     2101 aggattatag tattcttatc attgattcta tacaaactct atattcaaat aaagtcactt
     2161 cagcagcagg aagcatcact caggtgcgtg agattacttt tgaacttatg cgtgttagca
     2221 aggcttataa tatcagtact tttatcatag ggcatattac taaagaaggt gctatagcag
     2281 ggcctagggt tcttgagcat atggtagatg tggtgcttta ttttgaagga gatgccacta
     2341 aagaaatcag acttttaaga ggctttaaaa atcgttttgg tggaacgaat gaagtaggta
     2401 tttttgagat gactgctaag ggtttgatta gcgcaaaaga tttagcaaat cgttttttta
     2461 ctcgtggaaa ggctatttca ggaagtgctt taggtgttgt gatggaagga tctcgtgcct
     2521 tggttttaga agttcaagct ttagtgtgtg aaagttctta tccaaaacgc agcgctacag
     2581 gatatgaaaa aaatcgctta gatatgcttt tggctttgct tgaaagaaaa cttgaaattc
     2641 ctttagggca ttatgatgta tttgtaaata ttagcggcgg agtaaaagta agtgaaactg
     2701 ctgcggattt agctgtggtt gcagctatta tttcaagttt taaaaatcgc cctttgagca
     2761 aagatagtat ttttataggg gagcttagtt taaatggaga aattagagag gtttttagcc
     2821 ttgatacgcg tttaaaagaa gctaaaatgc aaaaatttaa aaatgccatt gttccttcta
     2881 agcctttgga agatataggg cttaagtgtt ttgttgctaa agaactttca caagttttag
     2941 aatggatgta aattttcatt aaaatataag taagattttg ctaaaattcc gagtttagaa
     3001 taaaattttt gaggaaacca tgaaagattt atttttattt agctctttgc ttgatgcaag
     3061 tcatactttt tcttattttt ttcacatagg tttggtagct ttaattgctg ttatagtggc
     3121 tatgatggct actcgttcta tgcaacttgt tccacgcggt atgcaaaatt taggcgaggc
     3181 ttttttagag ggagttttat ctatgggtag agataccatg ggaagtgaaa aaggtgcaag
     3241 aaaatatctt cctttggttg caactttggg gattatagtg ttttttagta atattatagg
     3301 cataatacct ggttttcact ctccaactgc aagtttaaat ttgactttgt ccttggctat
     3361 tatagttttt gtatattatc attttgaggg tattagggcg caaggttttg taaagtattt
     3421 tgctcatttc atgggaccta ttaaactttt agctcctttg atgtttccta tagagatagt
     3481 ctctcatctt tctcgtgtgg tttctttgtc cttccgtttg tttggaaata ttaaaggtga
     3541 cgatttattt ttgatggtaa ttttagcttt agttccttat atagctccac ttcctgctta
     3601 tgtgctttta acttttatgg catttttaca agcttttatt tttatgattt taacttatgt
     3661 atatttagcg ggtgcaactg ttgttgagga aggtcattga tctatatttt agaatttttc
     3721 aaaggtgcat ctttagcttt aatgcttttt ggtgcacttt tcttcttttt taaatataat
     3781 tcttttttct atctttgctt gggtattata ccaggtttgc ttttatcttt aatttttgtt
     3841 ttacttatag aaaaccataa gctaaaaaat gaaaataagt taagataaaa gcaaaaaata
     3901 gtttattttc taagcatgaa gctcttcttt aagcaaatgc tttacagctt cataaatttt
     3961 aatagccgct ttggatttat tcatagtata aagatgaatt ccatctacgc cacttgtgat
     4021 taaatcgaca atttgatcgc aagcataagc gatacctgca tcttctaaag ccaaagcatt
     4081 attttcatat ttttctaaaa ttttaacaaa tttaggaggg attttagctc cgcaaagttg
     4141 agaaattttt aaaacctgtc ttttgttagt aataggcata atacctgcgt aaataggtat
     4201 gtcaatacct gctaaagcac aattttgttt aaaagcataa aaatcttcat tatcgtaaaa
     4261 aagttgagta atgagcttgt ctgttcctgc atttacctta gttttaagat ggtgtatatc
     4321 ctcgatgaaa tttttagatt cattatgttt ttcaggatag catgcggcat aaatttcaaa
     4381 gtattcttgt ttttttataa aagaaattaa atcactagca taagaaaaat ctttactttt
     4441 ttctaaattt tcacatatat cgcctcttag agcaagaatt tgattaagat ttttttcttt
     4501 gcatttttga agtatctgag tgattttttc tttactagaa tggatgcaag gtaaatgtac
     4561 tatgctagga atttgatatt cttcctggat taagcttgca acttctaaag tattttgtga
     4621 gttaatagag cctccagctc caaaggttac gctgataaaa ttagggctta attgccctaa
     4681 atcatctaag atagcatgaa gatttttgat attttcatcc tttcttggtg gaaaaacttc
     4741 aaaagaaaaa ctacacatga aaactcctta taattgttct cgtatttttt gcgtagccgt
     4801 aactaaattt ttaagagagg ctataacttc ttcataggtt cttgttttaa gtccgcagtc
     4861 tggattgatc caaatttgct ccttaggtaa tttgtttaaa attttttcta tagttaaact
     4921 taattcttct acgcttggaa ctctagggct atgtatatca taaactcctg gtcccacctc
     4981 agttttaaaa cgaatagctt ttagggtatc taaaagactt aagtttgatc ttgaagcttc
     5041 aaaagaaatc acatcagcat ccatagcgtc aatttctttt aagatatcac taaattcact
     5101 ataacacata tgagtgtgaa tttgagtttt agcttttacc ccgctatgca caagattaaa
     5161 agcaggaata gcccaattta aatactcact atgccaatca cttttcctta aaggcagttt
     5221 ttcacgcaaa gcggcttcat caatttgtat gatttttata cctgcatttt caagatctaa
     5281 tacttcatct cttatagcta aggcaatttg ctcagtactt tcttttagac taatgtcttc
     5341 tcttggaaag gaccaattaa gtatggttac aggcccagtt agcatgcctt ttacgatttt
     5401 ttgacttaaa ttttgtgcaa atttagacca agctaaggta ataggcttta tgcgcgatac
     5461 atcaccccaa atcacaggag gtttaacgca ccttgtgcca tagctttgca cccaaccatt
     5521 ttgagtaaat aaaaagccct ttagattctc tccaaaatac tccaccatat catttctttc
     5581 aaattctcca tgcactaaaa catcaagtcc tatttcttct tgaatttgta tgcattcttt
     5641 gattttttgt tggttaaatt cagtgtagtt ttgagctgaa attttttctt gcttaaaggc
     5701 aaggcgatta gatcttacat cagcactttg aggaaacgaa cctatggttg tggttggtaa
     5761 aagagggagt tttaaaaatt ctttttggat taaggcgcgt tctttaaaac taggcgttct
     5821 ggtaaaatct tcttttttta aagccttaag ccttgctttg actttttcat ctaaacgctc
     5881 tgggatattt ttaaaaagct cttgattggc tctaaagagc ggattttctt cgctagaatt
     5941 tagaatttct tttaaatctt taagttcttg aagtttttct ttggcaaagg aaaaaagttt
     6001 aagatagttt gaatctaatt tgctttcaaa ttcagtgcta taaggcacat gtaaaagtga
     6061 gcaagaagtg tttaagatga tattttgtgt atatttttga agctctttaa taagctttag
     6121 gcttttagca taatcattag tatagatatt tttgccatta ataagacctg caaaaaggat
     6181 tttatcttta gcaaagccgt atttttgaac taaggctaag ctttgtttac cttcgataaa
     6241 atcaagaccc aaagcatcaa atttgctttc taaaagttta ggataaatat ctcttaagtc
     6301 tccaaaatag ctttgaagta aaattttaag atcttttttg tgatttaaaa gttcttggta
     6361 aaattcttca aacaaagcga tatcttcctt gcttaaatca taaaccaaat aaggctcatc
     6421 aagttcaagc catgtcactt taagttcatt tagtttatca aaaagctcta tgtaagcgtt
     6481 taaaagcttt tctttagcga gtttttgagt tttttcatct ttaaaggcaa tgagtttaaa
     6541 aagtgtgaaa atgcctatta aaacaggctt gctttctatg ccaagctctt tagcttcgag
     6601 atattcttta aaaattttat cccctgttaa agctataata tcagcattat cgcactcagg
     6661 caccaaataa tgataatttg tattgaacca ttttttcatt gctaaggctg taacatctcc
     6721 attttctcct tgataacctc gactttgagc aaagtattca tctaaagcat ctaaatttaa
     6781 atttttatac tttgtatgaa caatgttaaa aagcacagct gcatctaaga cattatcata
     6841 aagtgaaaaa tcattactag ggataaaatc aatgccagct ttttgaattt cttgccagtg
     6901 tctaatcctt aaatccttag cactctttaa aagctcctct ttagaacttt ggtttttaaa
     6961 gtatttttca atagcaaatt ttaattctct atttgcacct attcttggat aagaaatgat
     7021 tgaatttttc atatttattc tccttaaaat gtagggatta aagcaccctg atatttttct
     7081 tctataaatt ttttaacttc atcgctttgc aaggccttta ctagggcttt gattttagga
     7141 aggttttcat taccttcttt aacagcgatg atattgccat attcactata tttactttct
     7201 gtataaagcc catcttttac agggtttaaa cctgctaaaa tagcaaaatt gctattaata
     7261 agagaataat ctacatcatc taaactcctt gtaagttgag cgtcttttaa ctctgcaaat
     7321 ttaagcttct taggattttt agtgatatct aaaggagtga tgagctcatt atccttaact
     7381 tctataagtc ctttgcttgc tacaatgcgt aaagcacggc tttcatttgt aggattattg
     7441 ggtatagaaa tgctttgtcc ttccctgggg tgaaattctt tgtgtttttt agaatacact
     7501 gccataggtt ctatatggat actggcaact tttacaagat gggtgccttg tctttgattg
     7561 aattctttta aatagggttc atgctgaaaa taattagcat ctaactcacc attttcaacc
     7621 attacattag ggattactcc atcattgaat tcataaattt ttaaatcata accttgtttt
     7681 tgaagtgctg attttataaa tcttaaaata tctgcatgag gtgttataga agagccaact
     7741 ttaagttctt catttgtcca tgcaaaaccg gtaaaaagag tagcgacgca aaaagcttta
     7801 gtaaataaag tcattttttc tcctttatgc aaaactaaat ttttctatca agtcactatg
     7861 ataaatactt gctacatcag gatgagagcg tatcattctt ttaaaataat tacttgcaac
     7921 atttcttaaa agtggatttt taggatcagt atccacacct ttactttctt tagcaagctc
     7981 tggatttaac ttaaaaatag gtatatcctt atcaagctgc actccaagaa aataagctat
     8041 gctaaagcgt tcttttgggc ttaaattcac gcggtgaata gtagctttta aatagccatt
     8101 ggtagctagt tctaaaaatt ctcctatatt aactacaacg ctattttcaa gtgggggtat
     8161 actaagccat ttaccatcta taaaagcttc aaatccgctt tgtttttctt gaaaaacaaa
     8221 agtgataagc ccaccatctt tatgtgaacc tacgccttga gtgatatttt ttgagctttt
     8281 tggataatgt atgattttgc aatgttcgta agaattttct ccataaagtt tatcaaaagc
     8341 attgttaggt agatcaagag cttgagcgaa ggcttttaaa agctttaaac aagctttttt
     8401 ggtttgtttg tgccaagtta agaaagtttt tttaagttct ggaatttcac taggccaaag
     8461 attaggacct tctagtcttt gccataaggg tgagtttaaa ttccagttta aagcatctct
     8521 ttctgtgcct atatccagtt gttctctata atccttagat cctgctgtgt attcaaaacc
     8581 ttcgctagta taacctctaa attgaggaga atgtaccata gaaataagct ctttcgaact
     8641 tctagaaaga ttaaaaaatt ctttgccaag tttgaataat
//
LOCUS       DARBBO010000068         8429 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.068, whole genome shotgun sequence.
ACCESSION   DARBBO010000068 DARBBO010000000
VERSION     DARBBO010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8429)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8429)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8429
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.068"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            150..1247
                     /locus_tag="SB854_001270"
     CDS             150..1247
                     /locus_tag="SB854_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HEG0957259.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIIGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGTKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIVFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLAFKGILW"
     gene            1338..1910
                     /locus_tag="SB854_001271"
     CDS             1338..1910
                     /locus_tag="SB854_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957260.1"
                     /translation="MKKILASVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTK
                     GEFKNVEYKFSKNIKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDVIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSK
                     ALKALSDVAAGHGGISWPLVDISFNADLAE"
     gene            complement(1926..2492)
                     /gene="rsmG"
                     /locus_tag="SB854_001272"
     CDS             complement(1926..2492)
                     /gene="rsmG"
                     /locus_tag="SB854_001272"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEG0957261.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNIADMGSGAGFPAVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKHTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRRYCILK"
     gene            complement(2493..3053)
                     /gene="ribA"
                     /locus_tag="SB854_001273"
     CDS             complement(2493..3053)
                     /gene="ribA"
                     /locus_tag="SB854_001273"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HEG0957262.1"
                     /translation="MEIKISEIANLPSKWGNFQMQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            3111..4094
                     /gene="hemB"
                     /locus_tag="SB854_001274"
     CDS             3111..4094
                     /gene="hemB"
                     /locus_tag="SB854_001274"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEG0957263.1"
                     /translation="MFKRFRRLRLNENLRSMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDATLEISAKQALVHARAGV
                     DMVAPSGMMDGVITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETIIAFKRAGAKLIITYHAKELAKTLKGEK"
     gene            4091..5011
                     /gene="argF"
                     /locus_tag="SB854_001275"
     CDS             4091..5011
                     /gene="argF"
                     /locus_tag="SB854_001275"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEG0957264.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLFTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            5008..5499
                     /locus_tag="SB854_001276"
     CDS             5008..5499
                     /locus_tag="SB854_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HEG0957265.1"
                     /translation="MKELEKYSTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            5486..6841
                     /gene="hemN"
                     /locus_tag="SB854_001277"
     CDS             5486..6841
                     /gene="hemN"
                     /locus_tag="SB854_001277"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEG0957266.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNANFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQNLILKIRSVFGNFSKDVEISCEIDPRFLNEEQATVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQPFELTQNALNLVRNKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGIGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            6843..8108
                     /locus_tag="SB854_001278"
     CDS             6843..8108
                     /locus_tag="SB854_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HEG0957267.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKIAKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKINYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVGMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFASPLELIAKAL"
     gene            8105..>8429
                     /locus_tag="SB854_001279"
     CDS             8105..>8429
                     /locus_tag="SB854_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957268.1"
                     /translation="MIMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDSEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IIHENT"
BASE COUNT         2928 a         1014 c         1582 g         2905 t
ORIGIN      
        1 aaagatctaa aaatatttcc atatctttga ttttcatgag tgattccttt atttaataaa
       61 aaaaatttat tataaaaatt aaaataatat atttctataa ttttaataaa aaaaatataa
      121 taacacaaaa tttacaaaaa ggaaaataaa tgaaaacaag ttttttagca catagcgtgg
      181 ctatagtgcg atcaaatttt aagggtttgc tttttactgc ttgtatagtg atttttgcta
      241 tgtatctttc tagtgttcaa agtatcaaag ataccactca tttagcagcg actgcttttg
      301 ctattatcat aggagtgttg ctttctcctt ggttttttaa ataccaacat cattttcaag
      361 ccggagtgca ttttagtgcg aaaaaacttt taagacttgg cattgtttta tatggtttta
      421 atatcacttt aactgagctt ttaagcgtag gattgaaagg atttttgctt tctgctatag
      481 tgatattttt tgtttttatt attgctttat ttgtgggaac gaaaattttt aaactcgata
      541 aagaaacttc tatgcttgtt ggagctggga gtgcgatttg cggtgcggca gcggttttag
      601 cactagagtc aagtttgaaa agtgatcctt ttaagggaat tttagctgta ggtacggtgg
      661 tgatttttgg acttgtattt atgttcttat atcccatagt tttttcttta aatctttttc
      721 ctttttttga tcaaaatgct atgggtgttt ttatgggagc tacgttgcat gaggtggcaa
      781 atgtcgcagg tgctgctgaa atggcaaagg atatggcagg atttgagcaa ggtgcttcta
      841 atgttgcagt gattataaaa atgatgagag tgattttact tgtgcctttt ttgcttatag
      901 tgacttattt tttcgctaaa aatcaacatt caagcagtgg aaaaactgca aaaagtatca
      961 ctatacctta ttttgctttt gcatttttag gcatgatagt tttaaatact tatttagcaa
     1021 gcaaagaaag tattttaggt attgctacga gtgatatcat ctctttaggt aaaacacttt
     1081 gtactttatg tatcgttttt gctatggcag ctttaggctt gcaaattgac tttaaaaaat
     1141 ttttaaaaag tggctctagg gtatttggct tggcttttgt tttagggctt gttttgattt
     1201 ttggaggata ttttttaacc ttagctttta aaggtatact ttggtaataa aaattatttt
     1261 ttagaaaatt tttattttat taatcaacta agaatataat ttaattcatt aattaaattt
     1321 attaaaaagg aataaagatg aaaaaaattc ttgcaagtgt tttaagttct tgcttgttag
     1381 cttcggcttt aagtgctgta tcttttaaag aagatagttt aaaggtttct tttgaaggat
     1441 ataaaactaa agatatgata ggaacaaaag gtgaatttaa aaatgtagaa tataaatttt
     1501 ctaaaaatat aaaggatttg gcaagttatc ttaaaggcgc taaagctacc ataaagccaa
     1561 gcaatgcttt tatgggtgaa ggcaatgata ttataaccaa taatatcaca aaagtatttt
     1621 tccctgcttt attgggagat acggatatta aagttgtttt tcaagatgtg attgcgggtg
     1681 aaaataaagg cgttatttca gcaaaaatta ctatggataa aaaaagtact attgtacctt
     1741 taacttatac catcaaagat aataaatttg aagctaaagg acaacttgat ttgcatactt
     1801 ttaaaaatgg ttctaaagca ttaaaagcat taagcgatgt tgctgcagga catggtggaa
     1861 tttcttggcc tttagtggat atcagtttta atgctgattt agcagaataa aaagtagcct
     1921 tagggctact ttaaaataca atatcttctt aaattatttt caaaaatttc ataatctttt
     1981 atattttcaa gttcttgata aatttcacta cctttccata aaataaaaac tgtattttca
     2041 tcttttagat ttttgcaaat ttcaagtaaa ggcttgacat ccattaaggc tcttgaagtg
     2101 atgatatcag ctttaaaggt atgcttgtat tcttgaactt tttctttgta aatatgtaaa
     2161 tttggaagtt cacattctat ttttaatgtc cgcaaaaagg cagctttttt gggattgggt
     2221 tcgaaaagat gaaaattgct ttgcagtaaa aaagctaaaa atacagctgg aaatcctgcg
     2281 ccacttccca tatcggcaat attttttgct ttagaaaaat cataaaaatc taaaatttta
     2341 atactatcaa agatattttc atctatattt tttaaatgag taagattgtg aatgcggtta
     2401 aatttagata ataattcttt ataaattttt accttttctt caaagttttt taaatcgtag
     2461 ttttgcaaaa aatcataatc tttaaaaatc atttatttaa gatgtcccat ttgagtttgt
     2521 tttatgttta aatactctac attaaaacga ttaggttcta ttaaaatcgg tatgcgtgtg
     2581 atgatttttt ctttgataga atctagcttt tcagggttat ttgtgagtaa attaacctta
     2641 gaaatttcat agtgtttgag tataaattct acaatttcat aagttctctc atcggcttta
     2701 aagccaagct gatgatttgc tttaatcgta tcaaaacctt tatcttgtaa agcataagca
     2761 ttaaccttgt taaaaagccc tatacccctt ccttcttgtc taagataaat caccattccg
     2821 ccattctttt ctatatattt tagcgaaaat tcaagctgtt ctccgcagtc gcattttaaa
     2881 cttcctaaag catctcctgt taagcactct gaatgaattc ttagattgag tgtatctttt
     2941 ggagtgtttt taaatatgca taaatgttct ttatcgttct ctttgaaact ttgcatttgg
     3001 aaatttcccc atttgctagg taaattcgca atttctgaaa tttttatttc catttactac
     3061 tctctataat caaatttatg ttaagatttt agcaaaaaaa ggacaaaaaa atgtttaaaa
     3121 gatttagaag attaaggctt aatgaaaact taagatctat ggtaagggaa aattctttaa
     3181 gtgtaaatga tttgatttat ccgctttttg tggttaatgg aacggggata aaaaaagaaa
     3241 tttcttctat gcctgatgtg tttcaaatga gtttagatga aattttaaaa gagtgtcaaa
     3301 atgtagttaa tttaggcatt aaagccatta tactttttgg tgttttagaa aatgagaaaa
     3361 aagacagttg tggaagcgat gctttagatg atgaagggct tgttgcaaga agtataagag
     3421 agattaagaa aaattttcca gatcttttta taatcagtga tctttgtttt tgtgaataca
     3481 cagatcacgg gcattgtggg attatcgatc caaaaacaaa aagcgtagat aatgatgcaa
     3541 ctttagaaat ttcagccaag caagccttag ttcatgcaag agcaggggta gatatggtag
     3601 cacctagtgg aatgatggat ggtgttatca ctactttgcg caaagcttta gataaggaag
     3661 gttttgaaaa tttgcctata atggcgtatt ctactaaatt tgcatcaagt tattatgggc
     3721 catttcgaga tgtagcagag tcagctccaa gttatggaga tagaaaaagc tatcaaatgg
     3781 attttgctaa tggtaaagaa gctttagaag aaagcttgga ggatgaagca caaggagctg
     3841 atattttaat ggtaaaacct gcccttgctt atcttgatgt ggttaaagaa atatcccttc
     3901 attctaactt gcctttgtgt gtttataatg taagcggaga gtatgctatg ttaaaggcag
     3961 ctaaaaatgc aggagtgatt gattatgaaa aagttttgta tgaaactata atagctttta
     4021 aaagagcagg ggcaaagctt atcatcactt atcatgctaa agaattagct aaaacgttaa
     4081 aaggagaaaa atgaaacatt ttttaacttt aagagatttt tctaaggagg aaattttaag
     4141 ccttgtaaat catgctagcg agcttaaaaa agagcctaaa aaacttttac aagataaaac
     4201 tttagcaatg atttttgaga aaaactctac aagaacaaga atggcatttg aattagccat
     4261 aacagagctt ggcggaaagg ctttgttttt aagcagcaat gatttacaac ttagtcgtgg
     4321 tgagcctgta aaggatacag ctagggtgat aggggcgatg gttgattttg tgatgatgag
     4381 ggtcaataaa catgaaactt tactcgaatt tgcaagatat tctaaagctc ctgtgatcaa
     4441 tgctttaagc gagctttatc atcctactca ggttttaggg gatttgttta ctatcaaaga
     4501 atggaataaa atgcaaaatg gtatagcaaa agttgctttt atcggagata gtaataatat
     4561 gtgcaattct tggcttattg cggctgcgat tttgggcttt gaaattagta tagctatgcc
     4621 aaaaaactat aaaattagcc ctgaaatttg ggaatttgct atgaaacagg ctttgatttc
     4681 aggagctaaa atttccttag gccatgataa atttgaagcc ttaaaggata aagatgtagt
     4741 cattaccgat acttgggttt ccatgggcga agagaatgaa aaagaacgca agattaaaga
     4801 atttgaagga tttatgatcg atgaaaaggc tatgagcgtt gccaataaag acgcgatatt
     4861 gcttcattgt ttgcctgctt atagaggtta tgaagtgagt gaagaaattt ttgaaaaaca
     4921 tgcagatgtg atttttgaag aagcaagaaa tcgcctttat gtggtaaaag ccttgctttg
     4981 ctttttggat aatcagagag gaagagaatg aaagagctag aaaagtatag cacttgctta
     5041 aaacgcattg atgaatttag tcaaaatcta ggaataaaga aaaaagatag aacgattttt
     5101 aaaatgaagc aaagcgagaa tgaaaacgaa aaatgtttag ttcttgaaaa tggaagtttt
     5161 gattctcctg agccttggtt tgtgatcgat gaaaacgatg aaattcacac tttgctttct
     5221 ttgcaaagtc ttaagaatat acttgaaagt ttaaaacaaa gtcaaaaaga gaattttgaa
     5281 ttgcgtttag aaaaggcgat ttatcaacaa attcctgtag attttaacga tgtttggacg
     5341 gttgctatgg atgagatcaa gcaaaaggcg caaaatggca ccatggaagt tagtattgat
     5401 cttgaaaaat taatttctaa aatcaaacaa gagcatccaa atttatttgt agatatgcaa
     5461 gcgatgatag aaagggtaaa ccaaaatgag agattataaa gcttttgtaa aatactctaa
     5521 agcaggacca cgctacactt cttatcctac agcagtagag tttaatgcaa atttcaaata
     5581 cgaagaatat atagaaattt taaaaaagca agatagatct ttatcacttt attttcattt
     5641 accattttgt aggagtgctt gttatttttg tggttgcaat gttatttata cagccaaaga
     5701 agagagtaaa gaaaggtatt taacttatat ttttaaagag cttgatattt taagtactat
     5761 tttagatact aaaagagaag tggtgcaaat gcactttggg ggcggaactc caactttttt
     5821 tagtgctaaa caacttcaaa atttgatttt aaaaatcaga tctgtttttg gaaatttttc
     5881 taaagatgta gagattagct gtgagatcga tccgcgtttt ttaaatgagg aacaagccac
     5941 agttttaacg caaaatggct ttaatcgtat cagctttgga gtgcaggatt ttgatgaaaa
     6001 agttcaaaaa gaaattcatc gcatccagcc ttttgaatta acacaaaatg ctttaaatct
     6061 tgtaagaaat aaaggcataa agtctgtaaa tatggattta atttatggtt tgccttatca
     6121 aaatttacaa agctttacac aaactttaga aaaagttatg cttttaaacc ctgatcgttt
     6181 ggcgattttt aattacgctc atgtgccttg gcttaagaaa aatatgagaa aatttgatga
     6241 aaataccttg ccaagtcctg atgttaagct tgaaatttta gaattttgtg agaaattttt
     6301 aagcaaaaat ggttataaaa tgataggaat ggatcatttt gcaaaagaaa atgatgagct
     6361 ttttaaagct ttagaaaatg gaactttgca tagaaatttc caaggttata ctaccaaagg
     6421 cggtgctgat ttagtcggta ttgggcttac aagtataggc gaagggcaaa gacattatgc
     6481 gcaaaatttt aaagatatgt caagttatga agctgcatta gatagaggag ttttgccttt
     6541 tgaaagaggc gtagctttaa gcgatgatga tgagcttaga aaagcagtga ttatggagtt
     6601 aatggcaaat tttaagcttg atatcaagtc aatagaaaaa gaattttgca ttgattttca
     6661 ggagtatttt aaagaggatt taaaagcttt agaagaatac aaagatttta ttaattttga
     6721 tgaaaatttt atcaaagtca atgaaacagg cgttttgctt ataagaaata ttgccatgtg
     6781 ttttgatgct tatatgaaaa acattagtga agataaaaaa gtattctcaa aaacggtgta
     6841 agatgaaatt tagtcaaata agtgatgctt gtgttaaatg tggcaaatgt atacctgttt
     6901 gtactataca cgaagaaaat cgcgatgaaa ttactagtcc aagaggattt ttagatcttt
     6961 tagctgctta taaagaggga agtctagaac ttgataaaga agctaagaaa gtttttgaat
     7021 cttgtttttt atgcaccaat tgtgttgaag tatgtccaag taaattaaga gtagataatg
     7081 ccatagaaga agttcgttat gatatagcta aaaaatttgg tatagcttgg tataaaaaac
     7141 ttattttttt ctttttaaga agacgcaaaa ttttagattt ggtagctaag cttggctatg
     7201 tgtttcaaag ttgtgcgttt aaaattcaaa atgagaatga aaatacaggt atgaaggcaa
     7261 gattttccat gccttttgtt aaaaagggaa gattgcttac aagttttaat aaaaaaagtt
     7321 tcttaaattc taatccaaaa tttatcaata atgatggaga aaaaacaata ggtttttttg
     7381 taggttgttt ggcgaattat ttttacatag atacggctaa tgcagtgctt aaaatcgcta
     7441 aggaattaaa aatcaatgtg gatttgatga aagaacaagt gtgttgtgga gcgccgcaat
     7501 tttttacggg tgattttaaa agtgttgaag ttttggctaa aaaaaatatt gagtattttg
     7561 aaaaaaaatt agaaaaatta gatgctatta tagttcctga ggccacttgt tcggctatgt
     7621 taaagataga ttatgaacat ttttttataa tgcaaaatga tttagactgg gcaaaacgcg
     7681 caaaatgtgt gtcatctaag atatatatgg ctagcgagta tttttataaa tttacttctt
     7741 tagaagaaat tttaaaaaca aaaaataaaa ttaattatag cattacttat cacgatcctt
     7801 gccatgcaag aaaaatgcaa ggggttttta aagagccaag agaactttta aaaacaaatt
     7861 atcattttgt agaaatgagt aattctaata cttgttgcgg ttttggcggg gtgggtatgc
     7921 aaacggatta ttatgataga gccttaagtg tagggcttaa aaaagcacaa atgatcgatg
     7981 aaagtaaggc tagtgtggta agtgccgagt gttcagcttg cagaatgcaa atttcaaatg
     8041 cattagaaca aaattcaagc aaggttgttt ttgctagtcc tttagaactt atagcaaaag
     8101 ctttgtgata atgaagatag tatttaaagg caaaagttct gaatatgaaa ttcaaagatc
     8161 gtgcttttgt gttgatgctt ttgtgattaa agataagatt gaagaacgag atggtgttga
     8221 ttttatcact tcaaatgtag atcttttgga atttagtgat gacagtttta cttttgaaga
     8281 aattgtaaaa cattttaata tttgtgatag tgaagatatg attatcgttg aagattttga
     8341 catgaaatca aacaaagata atcaaaacca agaagatgat atagaacaca acatcttaaa
     8401 atccgaaaaa ataatacatg aaaacacaa
//
LOCUS       DARBBO010000069         8427 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.069, whole genome shotgun sequence.
ACCESSION   DARBBO010000069 DARBBO010000000
VERSION     DARBBO010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8427)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8427)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8427
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.069"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            11..382
                     /gene="exbB"
                     /locus_tag="SB854_001280"
     CDS             11..382
                     /gene="exbB"
                     /locus_tag="SB854_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HEG0957269.1"
                     /translation="MAFIAFWCVVERMLFFRKINFKNYENQEQFNDAISENLTTIYII
                     YSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSLALKATALGLLVAIPTLMA
                     YNALLRKVSLLSNAYKANKNA"
     gene            375..764
                     /gene="exbD"
                     /locus_tag="SB854_001281"
     CDS             375..764
                     /gene="exbD"
                     /locus_tag="SB854_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HEG0957270.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAHGKIQISLPS
                     SENATNISNNEKKLLITIDEKNTFYLNDKLADLNEVQNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            761..1444
                     /locus_tag="SB854_001282"
     CDS             761..1444
                     /locus_tag="SB854_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG0957271.1"
                     /translation="MKTLFLNHKYQASYITFIVFIPLLFVIFHSNDFFKMEIKNEDSF
                     SLAIKQFTQTNPTNETKPTESIIEPIKPKPQPKVIKKTPEKMQKKIKKTPPHPIPNKT
                     PIAPTQEVKTFAKTTDTNVKPKITQLTQGKDNHPVLKEIQKAIQQAQFYPRQAKKMRM
                     QGTVKVEFLWKENKTLADLKIIEISGYDLLDKSALESIRKASLNFPHYNGDLRITLPI
                     IYDFKTLRG"
     gene            complement(1457..2326)
                     /locus_tag="SB854_001283"
     CDS             complement(1457..2326)
                     /locus_tag="SB854_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957272.1"
                     /translation="MKIDTSASLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     GVKVVFENKQGELIALNLSDENYSSLQKNFGSYMNYVARNDGSIRLNGEVNQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPSMREILSDIKEASGGGANAMKTIDPQKINKKDDKENNI
                     KEKEDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFQNK
                     IENQEAQIVDKRV"
     gene            complement(2330..2491)
                     /locus_tag="SB854_001284"
     CDS             complement(2330..2491)
                     /locus_tag="SB854_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957273.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            2586..3569
                     /locus_tag="SB854_001285"
     CDS             2586..3569
                     /locus_tag="SB854_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MnmA/TRMU family protein"
                     /protein_id="HEG0957274.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGIIGRSRKRQLELAAKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEAIEIGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3655..4743)
                     /gene="aroC"
                     /locus_tag="SB854_001286"
     CDS             complement(3655..4743)
                     /gene="aroC"
                     /locus_tag="SB854_001286"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEG0957275.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLREFDICVQSGVFGVGTFV
                     SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLIGL
                     GEVLYDKLESKLAHALMGINAVKAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLKFELKGRHDPCVGVRGSVVASA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4743..5417)
                     /locus_tag="SB854_001287"
     CDS             complement(4743..5417)
                     /locus_tag="SB854_001287"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEG0957276.1"
                     /translation="MKNIEKLEQSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5404..5844)
                     /gene="rnhA"
                     /locus_tag="SB854_001288"
     CDS             complement(5404..5844)
                     /gene="rnhA"
                     /locus_tag="SB854_001288"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HEG0957277.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5831..6817)
                     /locus_tag="SB854_001289"
     CDS             complement(5831..6817)
                     /locus_tag="SB854_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957278.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFANKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKERDFIKALELCTFNIADEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6887..>8427
                     /locus_tag="SB854_001290"
     CDS             6887..>8427
                     /locus_tag="SB854_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEG0957279.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPTKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEILTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     QNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHNILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIQTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILLDKILEKKGYEDSDIREFESKNIRKNLNYSEFLLG
                     ICKVN"
BASE COUNT         3035 a         1442 c         1086 g         2864 t
ORIGIN      
        1 tctaggaatt atggcattta tagctttttg gtgtgttgta gaaagaatgc tattttttag
       61 aaaaattaac tttaaaaatt atgagaatca agagcaattt aatgatgcga ttagtgaaaa
      121 tttaaccact atatatatca tctattccaa tgccccttat ataggacttt taggcactgt
      181 aataggcatc atggttacat tttacgaaat gggcttggcg ggcaatatag atgtcaaatc
      241 tatagtcgtg gggctttctt tagctcttaa agctacagcc ttaggacttt tggttgctat
      301 tcctacttta atggcttata atgccttact tagaaaagtt tccctcttaa gcaatgctta
      361 taaggcaaat aaaaatgctt aaactaccaa aaaatgaagg tttaaatata gtcccattta
      421 tagacattat gcttgttttg cttgctatag tgcttagtat ttcaaccttt attgcgcatg
      481 gaaaaattca aatctcactt ccttcaagtg aaaatgctac caatataagc aataatgaaa
      541 aaaaacttct tataaccata gacgaaaaaa atacttttta tttaaatgat aaattagctg
      601 atttaaatga agttcaaaat gctatttttt cacttgataa aaaaaccata gtagaactaa
      661 aaagcgataa aaatgctaaa tttgaaagct ttgtaaaaat tatagatttt ttaaaagcca
      721 aagaacatga aaattttcag attcttactg agaaaaacaa atgaaaactt tatttttaaa
      781 tcataaatac caagcttctt atataacttt tatagtcttt atacctttac tttttgtcat
      841 ttttcactca aatgactttt ttaaaatgga aattaaaaat gaagattctt tttctttagc
      901 aataaaacaa tttacccaaa ctaatccaac aaatgagact aaaccaacag aatccattat
      961 agaacctatc aaaccaaaac ctcagccaaa agttattaaa aaaactcctg aaaaaatgca
     1021 aaaaaagata aaaaaaacac ctccacaccc aataccaaat aaaaccccaa tagcaccaac
     1081 tcaagaagtt aaaacttttg caaaaacaac tgatacaaat gtcaaaccta agatcactca
     1141 attaacacaa ggaaaagata atcaccctgt attaaaagaa atccaaaaag ctatacaaca
     1201 agcacaattt tatccaaggc aagcaaaaaa aatgcgtatg caaggaactg taaaagtaga
     1261 atttttatgg aaagaaaaca aaactttagc agatttaaaa atcatagaaa tctcgggata
     1321 tgatttgtta gataaaagtg ctttagaaag cataagaaaa gcttctttaa attttccaca
     1381 ctataatgga gatttaagaa ttacactacc tattatatat gattttaaaa ccctaagagg
     1441 ataaaattat aatttgctac actctcttat ctacaatttg tgcttcttga ttttcaattt
     1501 tattttgaaa atctttactt aaattctgac ttaattcttg caaagatttt tgcttcagtt
     1561 tttcaaattc ttcaggattg ctagcctcaa gctttgcctg ctcatcagca cttaaagcac
     1621 ttaaaccttt ttcttgagct ttttgaagca aatcttcgtc ttctttttct ttgatattat
     1681 tttccttatc atctttttta ttgatttttt gcggatctat ggttttcata gcattagctc
     1741 caccacctga tgcttcttta atgtcgctta aaatttctct catgctaggt tctttaacat
     1801 cactatcatc aactttacca tctttattta catctttatc aataaaaaaa tttaattttt
     1861 cttctatatt tgcatcatca gatatttttt catcacttgt tttaaagcct aaattttgca
     1921 tactttgttg aagggtactt gtattaaaat ttaattttac actttgttgt ttattattta
     1981 aatttgaatt taaagaacca aaattatctt ttacactttc aaaccaattt gaaacaaatt
     2041 gatttacttc gccattaagc cttatactac catcatttct agcaacataa ttcatataag
     2101 aaccgaaatt tttttgtaaa ctactataat tttcatcgct taaatttaaa gctataagtt
     2161 caccttgctt attttcaaaa acaaccttaa caccatcgct atttaaactc gaaagatctt
     2221 gcacgggaat tttatcttga tcttcttttt ttaatacgct aagctctttt ttatcaacat
     2281 tattagttaa agaatgggtt aaactagcag aagtatcgat tttcattatt tatccttttt
     2341 tacattttgc aaataaacct aaacgacaca tttttctctc atgtgaattt tttaaagaat
     2401 tacacttttt aagttcttgc tcgtagttag cacaagaatt tgcaaaagca aaagaactca
     2461 aaatgcttaa aaccaaaatt atttttaaca ttttccaatc cttattttaa agatttttta
     2521 gttaaaatta taccttttat aatcgacaaa atcttaaaaa actttataat ctcagaaagg
     2581 aatcaatgaa agcattagct ctttttagcg gtgggcttga tagtatgctt gcaatgaaac
     2641 tcatcactgc acaaggcata gaagttaaag ctctaaatat caacataggt tttggaagca
     2701 caagtgataa aagcgaaatc atgaaaaagc gtgcggcaat ggtaggtgca gattttgaaa
     2761 tgatagatgt aagaaattcc tatcttcaag aagtgctttt taatccacaa tatggctatg
     2821 gcaaacattt taatccttgt atagattgtc atgcttttat gtttaaaact gctcttgcta
     2881 tgttaaaaga agaaaatgca agttttatca tcacaggaga agttttagga caacgcccta
     2941 tgagtcaaag aagtgatgca atggcaaagg ttaaaaaact tgctcttgat gaagaagatt
     3001 taatcttgcg tcctatgtgt gcaaaaaacc tacctctaac caaacctgaa agagaaggtt
     3061 gggtagatag agaaaaactc gaaggtatta ttggaagaag tcgtaaaaga caacttgaac
     3121 ttgcagctaa atttggctta gaagactttg aaagcccagg tggaggttgt ttgctaactc
     3181 ttgatagttt tgctaaaaaa attcgagatt tcatagaatt tgacaaagat atgcaggtta
     3241 atgacgcaca acttttaaaa tatggtcgtc atttaagatt acccaatgga gctaaaatga
     3301 tcataggtag aaatgaactt gaaaatactc ttttaaaagg tttaaaaact cctaaatatg
     3361 aagcaataga aattggggat ttaatcggag cttactcttt ggtagatgaa aaaatttcag
     3421 aaaaagactt agaacttgcc ttaaaaatag cccttaccta tactaaacac gaagtaggaa
     3481 aaagctatga acttaaattt aaaaatcaag cttatacaag tatagctttt gaaaataagg
     3541 ctgatattaa tcaatttttt attagttaaa gtataaagta tttagcaaaa caagcgatat
     3601 agtatttgaa tcttttcaaa atattgcaat caagcccatg aaaatgggct ttttttattt
     3661 taatccataa gcatttttta aattgtttaa attcgcactc gcattcaaaa gcaaacaatc
     3721 agccaaaact aaacgtacca tagcactagc tacaacactt cctctaacac ctacacaagg
     3781 atcatgccta cctttgagtt caaatttcaa attattgcca aatttatcta tactttcttg
     3841 cttggcaaaa atagaaggag taggtttaaa ataagttttt aaaataagat tttctccatt
     3901 tgaaattcct cctaaaattc ctccgctatg attgcttaaa aacttgccat cttttaaagc
     3961 atcattatta cacgatccgc gcattttgct tgcattaata ccttcgccta tttcaactgc
     4021 tttaacagca ttaattccca ttaaagcatg agctaattta gactctaact tatcataaag
     4081 aacttctcca agtcctataa gcataccact aacttttgta aaaacagcag cgcctacgct
     4141 atcttttgaa tttctagcat ttaaaatttc atttttaaag tcactttcta gttttggatc
     4201 aaggcaaaaa atttcacttt tcttagcaaa ttcaaaatca aattcttctt ctttcaaatt
     4261 tgatacaaaa gttcctactc caaaaacacc actttgaaca caaatatcaa attcacgcaa
     4321 aagcatcgct gcaactgcac caccagccac tctagcaaca ctttccctag cgcttgatct
     4381 acccccaccc ctatgatctc ttatgccata tttataaaaa taagtaaaat ccgcatgagc
     4441 aggacgaaat agatctttta aattatcata atctttagaa tgagcatttt cattaaaaac
     4501 tactatagct atgggatgac ccgttgtata tccttcaaaa accccgctta aaacctgagc
     4561 tttatcgctt tcttttcttg gtgttgcaaa tttacttccg cctttgcgtt tatcaagctc
     4621 attttgcaaa aattcttcat caaatttaac cccagcaggc attccatcaa taatacatcc
     4681 aacagccaca ccatgagact caccaaaact tgtaaatttc aatctcgtac caaaggtatt
     4741 cactataaag ctcctaattt ctcaagtgca atttttgctg ccatttgctg tgcttctttt
     4801 ttgcttcctg caatagctct tgcaagttct ttaccatcaa gcattaaagc aatttcaaat
     4861 tgctttaaat gatcagggcc aaaagcacgc actgtttcat actgcggagt ttgtccgatt
     4921 tttccctgtg taatctcttg taattttgtt ttataatctt ttataagaat ttttgcatca
     4981 atttgaggga aatttttttc tataagcctt aaagcaatag tttttgcaaa ctcgaaccca
     5041 gcttctaaat gtatagcacc tataatggct tctaacgcat ctgaaagtat agaaggcttt
     5101 tcttttcctc cattgttttc ctcagcaaca ctcataagaa taaaatcgcc caaatttaaa
     5161 ctatttgcaa tttttgcaaa agacttttca tttactaaag ctgctctaag cttagataaa
     5221 tctccttcgg catctttggc gaatttatga aaaaggtatt cacctacaac taaatcaagc
     5281 acggcatcac ctaaaaattc caagcgttcg ttgttgtaag attttttaaa acttttatgg
     5341 gttaaagcat gtataagaag atttttatct ttaaattcat aagttaaact ctgctctagc
     5401 ttttcaatgt ttttcatcat tttcccttgc aattttcaaa gcagcttcac gcgccaatgt
     5461 atcacacctt tcattttcca aatgtccatt atgtgctttt acccaaaaag ccttaatctt
     5521 atgagatttt gccactttaa tatattcctt ccataaatct atattttttt tacctttaaa
     5581 atcctttttt atccatcctt ctagccattc attaatactt tgaaccatta ggttagaatc
     5641 tgtaaaaagc gaaatttcac aaggctcttt taaagccttc aaagattcaa taattgccat
     5701 tagctccatt ctattgttag tggtattagc ctcagctcca aaaccttcct tttgatactc
     5761 cttataacgc aaaatataag cccatccgcc aaaacctgga ttattaagac atgagccatc
     5821 tgtataaatt tcaatgtgtt tcattgtttt tcacttcata aataatttta caagtattaa
     5881 actcataaca aacaggacag tgataaaaaa acaaaggcat tacattttta cactcagaac
     5941 aacgatatga aaattctaac cccgcattaa aagaattatc ttttaaaatt tttaacattt
     6001 taaaattaga atttttaaaa acaaactgat gcgtatcatc atgctttgaa attttaccca
     6061 aagcataaaa gaattctaaa aaatcttgat tttctaaatt aaacgcttca ttttctctat
     6121 aaagcaaatc acaaatatca aaaaaatttt gccctaaaaa catatgatat ttttcaaaaa
     6181 ctaaacgccc caacatagga ttgtcttcta ttttaaattc taaaagtttt ttcttttttt
     6241 cttcatcagc gatattaaaa gtacaaagtt ctaaagcttt gataaaatca cgctcttttt
     6301 gtacatcttc attaagctca aaaagacatt ctaaaagttc taaattttct ttataagaac
     6361 gaagttttaa ataaacaatt tttaaaagtt ttaaggcttg tatatttctt ggacgcagtt
     6421 ttaaagcttg taataaaact tcttttgcac gctctaaaaa tcctgcttta aaataaactt
     6481 ttgctaaaga aaggaaaata aattctcttt cttgtttatc tttacatttt tcaagagcaa
     6541 tcaaataaat ttgagttgct ttttcaaatt ccccgctttt agtaaaaatt tcagccaaaa
     6601 aacttaaatt tccaaaactc aagctactat ttcttaacaa ctctttatga gcgttatcca
     6661 tttcaaattt ttttataaat ttttcaagct tttgttcttc atctttgtta gcaaatattt
     6721 tccaaatata atttgcaaca gctacaacaa atactaaaat ggttaaaatt ataagcccta
     6781 ctaaagggtc tctgtattct acaaagaaaa aatccatagt ctcgctctaa aaattttatg
     6841 ccaaattata gccaaatctt tgtataattt taacaaggtt tgtaaaatga taactaaaga
     6901 aagtatagaa aatttatccc aaagacttaa tattgttgat attatagaaa attatattga
     6961 agtaaaaaaa caaggctcta gttttgtatg tatctgtcct tttcatgcag ataaaaaccc
     7021 gtctatgcat atcaatccta ccaaaggttt ttatcattgt tttgcttgca aagctggtgg
     7081 agatgctttt aaatttgtaa tggattatga aaaattaagt tttgccgatg cagttgaaaa
     7141 agttgcaagc cttagtaatt ttactttgag ctatacaaaa gaaaaacaag aaaataaaaa
     7201 agagctaaaa tctatactac caagcttaaa tgcgtatttt aaagataatc tcaaacacca
     7261 caaagaaatt ttaacctatc tttaccaaag agctttaaat gacaaagata tagccaaatt
     7321 cgaattaggt tttgcaggag caagtgaaga tagtataaga ttattgcaaa atcaaaaaat
     7381 tcctttagaa gatgctatga gtgttggagc tttaaaaaaa gatgaaaata atgaatttta
     7441 cgcaagtttt atatggcgta tcacctttcc aatctacgat cacaaagact tattagtagg
     7501 gtttggaggg cgtactttaa atcccaatgt accggcaaag tatgtaaatt caccccaaaa
     7561 tatacttttt gataaaagta gaatttttta tgcttttaac atcgctaaag aaaatatagc
     7621 caaaaaaaaa gaaataatag tatgtgaagg ctacatggat gcaatagctt ttcacaaagc
     7681 agggtttaat aacgctgtag cagttcttgg aacagcatta accgaacatc atctaccctt
     7741 aatccgccgt tatgatgcaa aagtgatttt atgttttgac aatgatgaag caggattaaa
     7801 agctgcgaca cgatctgcat ttttattaag cacaaacaaa atagacggta aagtggcaat
     7861 tttgcaaggc ggaaaagatc ctgctgagct cgtagcaaaa aatgaaagca caaaactcca
     7921 taatatactc gatgaaggaa tagagcttgg tgaattttat atcagacgct taatatccac
     7981 tcattccata atttctgctc ttgataaaca aaaagcttta gaaactatac aaaaattcac
     8041 ctttaatctt gaacctttag tggcaaattc ttacactagt ctagtttcaa atttattaaa
     8101 agtggatgaa aaatttattg tcttatcaca aaattcaaaa aaaaccatac aaaccccttt
     8161 aatttctcaa aataaataca attttcctaa agaaaaaatt cacattgcag aattagaact
     8221 tatagctttt ttaaaacagc atccagatat atgtaacgat tttaagcaaa ttagtgatag
     8281 tgtttgtttt aaacataaga ttttattgga taaaatttta gaaaaaaaag gttatgaaga
     8341 tagtgatatt agagaatttg aaagtaaaaa tattcgaaaa aatttaaact atagcgaatt
     8401 cttgttaggt atttgcaagg ttaattt
//
LOCUS       DARBBO010000070         8257 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.070, whole genome shotgun sequence.
ACCESSION   DARBBO010000070 DARBBO010000000
VERSION     DARBBO010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8257)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8257)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8257
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.070"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            108..779
                     /locus_tag="SB854_001291"
     CDS             108..779
                     /locus_tag="SB854_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEG0957280.1"
                     /translation="MVNVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLILTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            776..2011
                     /locus_tag="SB854_001292"
     CDS             776..2011
                     /locus_tag="SB854_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG0957281.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     STILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            2011..2583
                     /gene="recR"
                     /locus_tag="SB854_001293"
     CDS             2011..2583
                     /gene="recR"
                     /locus_tag="SB854_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEG0957282.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(2580..3116)
                     /locus_tag="SB854_001294"
     CDS             complement(2580..3116)
                     /locus_tag="SB854_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HEG0957283.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFFFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFTYE
                     KIADFSLQELADISYKNY"
     gene            complement(3113..3805)
                     /gene="cybH"
                     /locus_tag="SB854_001295"
     CDS             complement(3113..3805)
                     /gene="cybH"
                     /locus_tag="SB854_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HEG0957284.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVILGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEKH"
     gene            complement(3816..5531)
                     /locus_tag="SB854_001296"
     CDS             complement(3816..5531)
                     /locus_tag="SB854_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HEG0957285.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALNADVKKASDEAFKYTPNPYATGLDKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLSPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNQNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(5534..6673)
                     /locus_tag="SB854_001297"
     CDS             complement(5534..6673)
                     /locus_tag="SB854_001297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HEG0957286.1"
                     /translation="MIDYHQIESRLSTLEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLENAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKMASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPNFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(6793..>8257)
                     /gene="mnmC"
                     /locus_tag="SB854_001298"
     CDS             complement(6793..>8257)
                     /gene="mnmC"
                     /locus_tag="SB854_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HEG0957287.1"
                     /translation="YRFYFEDCFLDLVFEDIAVLKELNFKADVWYLDGFSPNKNSQMF
                     DENLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKREMIKAYLENEL
                     EFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFEIDIFEKHLELGKGAS
                     GNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLEFKGVVEFAHNDLMQERFD
                     TQRENVLFKISKNQAFLEEGGVIFPKKLVKNLFEKSKACIYFNHEFQAYKFENGCFSL
                     KFKNDVVKSDYAVLIYAMGADAKDFVFYDEMKLSKVRGQVTHLKPFLDTPFPLSSKAY
                     ICPVKDDLQVIGASYDRLNASLESKEEDDKQNIENIADFMDKNTKLEIIGSKVGFRSY
                     SSDRFMIVGNAYDEAFYKEEYKALLWTKNKEQKPAKMSCNLYFNFAHGSRGFSTSVLA
                     ARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
BASE COUNT         2863 a         1518 c         1153 g         2723 t
ORIGIN      
        1 attcaaaaat ataattttag caaaaataaa atcaataatt tatcaaattt taaataaaat
       61 tatgtaaaga ttttaaagac tacataaaaa tttacaagga cactagaatg gttaatgtgt
      121 tgatgataga agatgatcct gactttgcac aattattatc tgaatattta gcgcaattta
      181 atattaaaat cacaaatttt gaaaatccta aaagtgcttt aaatgtgggt attcaaggct
      241 atgattgtct gattttagat ttaactttac ctggaattga tggtcttgaa gtttgtagag
      301 aaatccgaca aaaaagcaat attcctatta tcatctcatc ggctagaggt gacttaagcg
      361 ataaagttgt ggggcttcaa atcggtgctg atgattatct accaaagcct tacgatccaa
      421 aagaaatgta tgcaaggatt atgagtctta ttcgtcgcac aaaaagagtt gaacacacta
      481 ataatgaaaa tattaactct gctttcaaaa ttgatgaaag aagacatgag atcacctatg
      541 aagataaggt tttaatactt actcctgctg aatttgaaat tttagaatac cttatccaac
      601 aacacggata tagtgtttca agagaacagc ttgtaagtcg ctgtaaaaat ctaaaagata
      661 aagattctaa aagccttgat gttatcatcg gtcgcttaag ggtaaaaata ggagatagtt
      721 caaaatctcc aaaacatatt ttttctgtta gaggtatagg atataaactg ataggatgac
      781 aaaaaattat tctattcata ccaaactgat tattttattt gttgttactt ttttcttggt
      841 ttgtgtgctt tttatcgttc ttttaaaaat agaagggaat acctataatg aagaagaaag
      901 tttaaaacaa gaaaatctta taaaaaattt actcatctcc tatgaaaaca cttcaggtgt
      961 tgaaatagga gcttatcttg gaaacagcgg ttttaacgct atacaaaatc ccaatcttgt
     1021 aaaagctata agaaataatg gacaatcact ttttaaagca ggcggagagc tttgtactct
     1081 ttcttcttta aaatatcata gcaatcttta ttttgatgtt caatgtaaag attttgatgg
     1141 cttgtatgaa gaaaatacta gtgatagggt ttataatctt ttattgatag gatttttctc
     1201 tttttctttg ttggttgttt ttatgtattt ttctgtatta aaatccttag aacctttaaa
     1261 aaaattaaga agacaagttg ccgaagttgc aaatggggaa caacctgatt ttctagacta
     1321 tcaagaagat gaagtaggca agatcgcctt tgaatttcaa aaagctttca agaaaaacca
     1381 agaattaatc caatcaagac aacttttcct aagaacaatc atgcatgagt taaaaacccc
     1441 tataggaaaa gggagaatca tttctgaaat gatcaaagaa gacagacaaa aagaaagact
     1501 tatcgctata tttttacgca tggattcttt gatcaatgaa tttgccaaaa tcgaaaattt
     1561 attttcaaaa aactacaact tacactttaa acctagtcgt tttagcacta tacttgaaga
     1621 agctaaagaa caccttatga tagatgattt taataaagtt gtaaaagtcg atataagata
     1681 tgacgcttta atcaatgttg atatggaaat tttctctgta attttaaaaa atcttatcga
     1741 taatgcctta aaatactcaa acaatggcac ttgtgagctt ttttgttgta aagaatgttt
     1801 taccattaaa aatccaggca aacctttagc agaacctata gagcattatc ttgaagcttt
     1861 tacaagagaa aaacacaatc aagtcaaagg tatgggacta ggactttata tagtttcaga
     1921 ggtatgtaaa ctgcataatt ttgatttgat ttatttttat gatgatggaa agcattgctt
     1981 taaaattttc tttggagata aagaaaaata atggtaaaag gcctggaaaa attcaatgaa
     2041 cttgttgaaa gttttgcaaa tttacctacc ataggaaaaa aaaccgccat aaggcttgct
     2101 tatcaccttt gcataaataa tcaaatcgat ggtatgaaac tcgcacacaa tatagaaaat
     2161 gctatccgct ttataaaacc ttgtgagcaa tgcggtgctt taagcgaaaa tgagctttgc
     2221 gaaatttgta gcgatgaaga aagaaataaa aacattttat gtatagttga aagcccaaaa
     2281 gatatactaa cactcgaaga gagtcaaagt tacaatgggc tatattttgt tttagatgag
     2341 ttaaatgaag aaaaacttga aaaactaaag caaatcatac ttaagctaaa tatctctgag
     2401 ctcatttttg cattgacaca tagcattaat tctgatgcaa ctatcttttt tatagaggat
     2461 aaatttaaag gcttaaacct aacttttagt aaaatcgctc aaggaattcc aagtggtgta
     2521 aatttagaaa atgtggattt aatctcttta aataaagcta tgaattttag aacaaaaatt
     2581 tagtaatttt tataagaaat atcggctaat tcttgcaaag aaaaatccgc aatcttttca
     2641 taagtaaaac cttccttgct taaaaagtca agtaaagttt tttccatgat tttagctcct
     2701 tgtataagct catctgagag cttaaaactc atcgcttcaa tacgctttgg cacacaagct
     2761 aagatatgtg ttttaggcaa atctcctgca agttccatgt attgtaaggt ttgaagcatt
     2821 tctatttcat gggcacttcc actccagcta attttattag gcatagcatc ataaggaaag
     2881 aaaaatacat ctcctatact cgcaccttgc gcttctatac agtctaaaac gataagtcta
     2941 tcgtacctag caatgatata gctaagctgc aaagccaaag ttccaccatc aacaaaatct
     3001 aaagtaaatt cagaatgagt gaatttgtag tttttttcaa gttgtttgca aagatgaacg
     3061 cctaagcctt catccgcaaa catgatatta cctattccaa ggactaagaa tttcaatgct
     3121 tttcttcttt tacaaattta tatccgctaa taatagcatc catagcacca tctttacctt
     3181 ttactgcgtt aaaaatcgcc atgtaaatat gtactggcac aaaaatcata attacccaca
     3241 tcaaaattct atgataagtt cttacatcgg ccaaaccgcc cattgcagct tcaagcggtc
     3301 ttaaaatatg atataaaagc ccacctaagc cctcatggta agtatgagta taaagaataa
     3361 gccctgtaag aatgatacct aatatcacaa gataaaagaa aaaataagtt acaaattgca
     3421 aaggattata aacccctttt aaatgcggat gttttcctaa gaaaatgtaa aattttactt
     3481 gttctatcca taatttgata ttaaaaatat cccatacact tctgcgttct tttgcgctta
     3541 ccttatcgca gaaaaacaaa tatactttaa aaataataca agcgattaaa acaaaaccca
     3601 ccgcttgatg cactaagcgg tattttgctt gcataaaatt tacgggttca ccgttactaa
     3661 tagggctttg gaacacatag gaaagataat accctgtgcc aataagaatc actatagcaa
     3721 tagctcttac ccagtgcgtt aaacgcaaac ctatgctaaa ttcatattca gcttttcttt
     3781 gcaatttttc ttctttgttt tgcatgaaag cctccttata aattgacatt cactttatat
     3841 tcacttagat tattgccctt agtatccatt acatgcaccg cacaagcaat acaaggatca
     3901 taagagtgaa tttttctaat gatttcaagt ggttgtttta catcagcgat tttaagtcct
     3961 atcaaacatt gctcataact tccacctacg ccatttgcgt cttttggact tgcattccaa
     4021 gtagaaggta ccacagcttg ccaattttca ataacaccat ttttaattct acaccaatgg
     4081 cttaatgttc cgcgtggcac atgccccata tagcgtcctt tgtattcttt agaattatcg
     4141 atcacataag gagcacaagt actctggtct acttttaaat tttcaactaa attattgaac
     4201 gcttttaaag cattatttgc aacgattttt gcttcaatac aacgagcagc tgttcttcca
     4261 agtgtactaa atacagcatt taaaggaagt cctgtttctt ttaagaactc atctactaca
     4321 ggaacaacat tttgattacc tttagcataa tttacaacga tatttgctaa aggtcctact
     4381 tgcatagggt ttccttcata gcgtggagct ttaatccaac tatatttacc cttagtatca
     4441 aacactttag aatggacatt atttccatga tgatctacgc tttctccatc tacaagtcct
     4501 gtataatttg gatttgtttt gccatcataa ggatgtaaag gttcattgtc tgcataccaa
     4561 gaatgagttg cctcttcagt aatcttatct tcttctactt cataaacctt gcttaaatct
     4621 ccatttttga taataccact ttcaaaaagc cattcatctc ttccgatttg gaattcttta
     4681 aaggtataaa gattatttac ccctatatca tttaaaacac ttgcttcatg tgcataagct
     4741 tttcctgcca tcacaagatc aggataatac gcacgattaa caaagtcttg cacttcttgg
     4801 aatttaacca tatattcacc cattcttgca ggatcgagta aatccataac gcaagttaca
     4861 ccaccaacgg ttaagctttg tggatgtgga tttttagctc caaaaatcgc catacattga
     4921 gcaatgattc tttgaattct taaacattct agatagtgag aaagaacgat taaattttgc
     4981 tcaggactta aacgataagt tggatgacca tagtacgcat tagcaaaagg tcctaaattt
     5041 cctttatcta caaaagtttt aagtctttgt tgcacttcaa gaagtttatc caaacctgtt
     5101 gcataaggat ttggagtgta tttaaaagct tcatcgcttg cttttttaac atcagcattt
     5161 aaagcactta ccacatcagc ccaatcaagc ccatgaagtt gataaaaatg cacaatatga
     5221 tcgtgtaaaa ataaagccgc attcattaaa gttcttgtta aaagcgcatt taaaggcgga
     5281 gtaataccca aagcattttc aacagcaact atacctgctt tataatgtga aaaagtacaa
     5341 actccgcaaa ttctttgcgt cataaaaccc gcatctcttg gatcacgccc ttttactatg
     5401 gtttcaatac cacgccacaa agtagagccc gcataagctt cttttaccac attgttatca
     5461 tcaacaacaa cttcaactct taaatgccct tcaattcttg taataggatc tacgattatt
     5521 ttttgactca tttttattcc ttatcttttt gcatggaaga tataactgcg tgtgctgcta
     5581 tagcaacgcc tgtgagtgta agcacaccta taccgatttt atctgaaaca ctatccgcac
     5641 ccaaaccaaa aacagtatca aatttacgac tagccatagg ctcttcaaaa ggtcccatag
     5701 tatcccaaaa attaggctca gaacaaccta tacaaccatg ccctgcttga ataggccaag
     5761 aagtgtgctg gttaaatctc tctcttgagc agttattaaa agtataaggt cctttacaac
     5821 ctactttata aagacaaaaa ccttgttttg ctccttcatc tccaaaagca tgtacaaatt
     5881 cacccgcatc aaaatgtccg cgtctttcac aaagatcatg aattcttaaa ccataagccc
     5941 attttggtct attatacaca tcaagtgctg gtaactcacc aaataataaa taatgaagta
     6001 cattacccac tatatttttt tcacttggag gacagcctgg aacattgatc acagttttac
     6061 ttgttacttt gcttaaaggc tgcgcgttgc taggatttgg tcttgcggct tgaattcctc
     6121 caaagctaga acaggttcct atagcaaaaa tcgccaaagc attttcactt gccatttttg
     6181 aaagctcata gcctgttttt ccatgtgcac ctatggttaa aaaatgctcc gtatcaccca
     6241 tagggatacc accttcaacc attaaaatgt atttattttt atgcttttga atggcatttt
     6301 ctaaattttc ttcagcttgc caacctgctg cagccatcac tgtttcgtga tattctaaag
     6361 aaatataatc aaaaatcaaa ctatcaatcg ttggagtatc acttcttaac aaactctcac
     6421 tacagcctgt acactcagcc atatgaagcc acacaacagg aagcctatca gcaagctcag
     6481 cagcttttgc caccatagga gtaaaactcg ctggcaaagc caaaaatgcc gtcatagcac
     6541 ctgcccattt cataaaatcc cttctagaaa aacctgactt ttctaatgct tttgtaatac
     6601 tatcattgtc tttcaaagaa ggaagctttt caagagtcga taaacgcgac tctatttgat
     6661 gataatcaat cattatattt cctttgtaac atgaaattta ttctctataa taataaaata
     6721 aaggaagtta aaataaagtt aaaaacttac tatcataagc aaatattagc atcactctta
     6781 attaaagctt aatcataagc cttttttaag tttgcgaatc aaaaatcttg caggatgaat
     6841 agcgtggatg tatttttttt ctaaacacaa gggttcatta tttatcaatg cacacaaata
     6901 ccttgccgct aaaacacttg tactaaaacc ccttgaccca tgagcaaaat taaaatacaa
     6961 attacaagac attttagctg gtttttgctc cttatttttt gtccataata aagctttata
     7021 ttcttcttta taaaacgctt catcataagc atttccaact atcataaagc gatcactcga
     7081 ataagatcta aaacctactt tagaacctat gatttctaat tttgtatttt tatccataaa
     7141 atcggctata ttttctatat tttgtttatc atcttcttct tttgattcta aacttgcatt
     7201 aagcctatca taacttgcac caattacttg caaatcatct tttacagggc aaatataagc
     7261 cttagaagat aaaggaaatg gggtatctaa aaaaggtttt agatgtgtaa cttgacctct
     7321 tactttgctt aatttcatct catcataaaa aacaaagtct tttgcatctg cacccatagc
     7381 ataaatcaaa accgcataat cacttttaac aacatcattt ttaaatttta aactaaaaca
     7441 cccattttca aatttataag cttgaaattc atgattaaaa tatatacaag ctttgctttt
     7501 ttcaaaaaga tttttaacca atttttttgg aaaaatcact ccaccctctt ctaaaaaagc
     7561 ttgatttttt gaaattttaa acaaaacatt ttctctttgc gtgtcaaatc tttcttgcat
     7621 taaatcatta tgtgcaaact ccaccacacc cttaaattct aaatctaaaa tttgtctata
     7681 aaaacgactt gcttctataa aagaaagctc tgaaaactcc cctaaattta ccttaggctt
     7741 taagattaaa gagcttaaaa ttccactttc atttccactt gcacccttgc ctaattctaa
     7801 atgtttttca aaaatatcta tttcaaaacc tcttaaacta agctcataag ctaaaacagc
     7861 acttgatata cctgcaccaa taatagctac ttttttattt tttaaagatg aaaatgttct
     7921 tgaaaaatac gcttctttgt ctttaaactc aagctcattt tccaaataag ctttaatcat
     7981 ttctcttttt ctaaaacctt tggttttttc tactctaaag ccatattttt ttaaattttt
     8041 ttgcaaaaaa cttgccgaag aaaaggtgca aatttgtgta ttttttttag aaagccttgc
     8101 cacttcaaag attaaatttt catcaaacat ttgcgagttt ttatttggag aaaatccatc
     8161 taaataccaa acatcagctt taaaattcaa ttcttttaaa acagctatat cttcaaaaac
     8221 aagatctaaa aaacaatctt caaaataaaa acgataa
//
LOCUS       DARBBO010000071         8211 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.071, whole genome shotgun sequence.
ACCESSION   DARBBO010000071 DARBBO010000000
VERSION     DARBBO010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8211)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8211)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8211
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.071"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            47..1426
                     /gene="cetA"
                     /locus_tag="SB854_001299"
     CDS             47..1426
                     /gene="cetA"
                     /locus_tag="SB854_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HEG0957288.1"
                     /translation="MVKNGLLLTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
     gene            1444..1941
                     /gene="cetB"
                     /locus_tag="SB854_001300"
     CDS             1444..1941
                     /gene="cetB"
                     /locus_tag="SB854_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HEG0957289.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            2029..3888
                     /gene="mnmG"
                     /locus_tag="SB854_001301"
     CDS             2029..3888
                     /gene="mnmG"
                     /locus_tag="SB854_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEG0957290.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     ARNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDIN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVKGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFETMDHYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            3889..5175
                     /locus_tag="SB854_001302"
     CDS             3889..5175
                     /locus_tag="SB854_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HEG0957291.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     ACFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILYFSREKNQEKIYISTKKMM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVTVFVLYVRVLPKRLEF
                     KLIKKEQISLKLFFLCIVFLFLFVISFFIGEIFNIKISFFALLWAGIFWLIILKIQGK
                     KSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILVKSYAFLMQDKSGIFGVALISA
                     FGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHLLGVNIGPKLTPIGSLATLLWL
                     GVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
     gene            5266..5769
                     /gene="petA"
                     /locus_tag="SB854_001303"
     CDS             5266..5769
                     /gene="petA"
                     /locus_tag="SB854_001303"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HEG0957292.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            5771..7021
                     /locus_tag="SB854_001304"
     CDS             5771..7021
                     /locus_tag="SB854_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HEG0957293.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMLLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWVGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            7018..8142
                     /locus_tag="SB854_001305"
     CDS             7018..8142
                     /locus_tag="SB854_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG0957294.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVAPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFAK
                     GDAKKGKEFFENNCFACHGVKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALII
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQKAALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
BASE COUNT         2694 a         1042 c         1556 g         2919 t
ORIGIN      
        1 tttgatttat gacttcaaaa aattttcaat aaaaaggggt aaatttatgg tgaaaaatgg
       61 attattatta actatttttc taagtgttat cggtgtttta ggtgtcattt ttattcatat
      121 ttttgttgga gcgataattt ttgttttaat cgctgtttta atgatttatt tgcttagaca
      181 acacaaagat gagcaaataa tgatagataa acttttggtt ctttgtagag agttaaagga
      241 gggtaatttc gacaatagaa tcatctatgt aaaaacaaaa agcaaaaaat tagccgaaat
      301 agcagataat cttaacaata ctattgatgg gctagaagct tacttaaggg aaattaatac
      361 ttctatttca tgttctcaaa aaggtgaatt ttatcgtaag gctttgcctg aaggtttaaa
      421 aggaattttt gctcataata tcgaatttat aaataaagct ttagcaaaca tagaagtgac
      481 agcaagatct acttttaaaa atgctttatc aagaacttta atggatttaa gccttggaaa
      541 tcaaaataaa gatatgtctc aaatttctag ctcattaaat caagatatta gcatgatgaa
      601 aaatgtatat gatacagtgg atgccatttc tcatacagct acagaaaatg gctcagaggt
      661 ggattctttg caaagtgcta tgggttcttt aatggatgtt gtaaattcga gcaaggaaac
      721 agtgcaaact tttgtggcta attcccaaaa tatcacttca gtggttgaag taatacgcga
      781 tatagccgat caaaccaatc ttctagcttt aaatgctgct attgaagctg cgcgtgcagg
      841 agagcatggt aggggctttg cggttgtggc tgatgaagtt agaaagttag cagaaagaac
      901 tcaaagatct acaagcgaaa tttctattgc aattcagact atgcaacaag attttgtaaa
      961 tatccaaagt ggcagtgagc aagtttttaa cattgttagt gaatctgaag aaagaattaa
     1021 taaattttct caagctttta aacgtctaga agaaaatagt agtgctcttg gtgttaattt
     1081 tggatccttt gcaaagagat tgattttgtc tgtggttaaa atcgatcata ttctttataa
     1141 atcaaatata tatttaaatt taaatggggc tcaaaatttc aatcttgaaa gtgtagatcc
     1201 aatttctaat ctttgtcaag atgagagagc tcaaggtgtt attaatgagc ttagttctga
     1261 aactgagtta aatttagcta aagaatttat aaaagataac gctaaaaaag caatagaaga
     1321 atcaagtcaa gattatatcg atcaaaaagc ttatgatgcg attgtaaatg atattaaatc
     1381 actagagcaa agaagtgctg aaatcttagc aaaattaaaa atataaatta agagggtggg
     1441 aaaatgtcaa gagaaatttt tttacaagaa gatagtttaa ttacttctaa aacagattta
     1501 aaaggtaaaa tagtttatgc aaatgatgat tttttaaagt atgcaggtta taccatgggt
     1561 gaagttttaa ataaacctca taacatagta agacatgaag agatgccaaa aactgttttt
     1621 aaatatttat gggattatat gaaagaaggc aaagaaattt ttgcttacgt aaaaaataaa
     1681 accaaagata acaattacta ttgggttttt gcaaatgtaa ccccatcaat agatgttaat
     1741 aataatatca taggctatta ttccgttcgt cgtatgccaa ataaaagcgc tatttctaca
     1801 atagaaagtc tttatagcga tcttttaaga gcagaacagc aacaaggctt aaataagggt
     1861 gttgagatgc ttaaaaattt ctgcaaagat gcagataaaa cttataatga gctaatcttt
     1921 tctcttcaag aagctaaata aatttttgtt agacttaaaa cgagtttgtt ttaagtccaa
     1981 atattatata atctttcttt taaaaattca catttttcaa ggtaaaatat gtttgatgtc
     2041 attgttatag gtggtggaca tgcaggtgtt gaagcaagtg ctgctgctgc tagaatgggt
     2101 aaaaaaacct tacttttaac tacattgatt gagcaaatag gagcggcaag ttgtaatcca
     2161 gccataggtg gacttgctaa agggcatttg gtaaaagaac ttgatgccat gggtggtctt
     2221 atgggtgaaa tcaccgatga agcagggata caatttcgca ttttaaatga aagtaagggt
     2281 gtagccgttc aaggaagtag ggcacaaatt gatatggata aataccgtat cattgcacgt
     2341 aataaacttt taaaacttcc aaatttagaa atttctcaag aacaagcgag tgttttaatc
     2401 gtagaaaatg atgaagttaa aggcgtaaaa acaaatttag aaaatatata ttttgccaaa
     2461 aaagtcatcc taacaacagg aactttttta aatggactta ttcatgtagg tgaaaataaa
     2521 cttcaagcag gaagggtagg ggagcttgct tcggtaaatt taggaaatta tctgcaaact
     2581 ttgggtttaa aaatgggacg tttaaaaaca ggaacttgcc caagagtgga tgcaaaaagc
     2641 attgatttta gcgtgcttga aattcaagat ggtgatataa atcctaaagc ttttagtttt
     2701 cgttcaagaa atttcaatcc tactcaactt ccttgttata tcgcacgcac taatacaact
     2761 acacatgaga ttattaagaa taatttttat cgtgctccgc tttttacagg acagattgaa
     2821 ggtgtggggc caaggtattg tccttctata gaagataaga tcaatcgttt tagcgacaaa
     2881 gaaagccatc atctttttat agagcctcaa actatcgatg cgacggagta ttatatcaat
     2941 ggtttttcta cttctttacc ttatgaagta caaactcaaa tgttgcgttc tgtaaagggt
     3001 tttgaaaatg ctaaaataac ccgttttggt tatgctatag aatatgacta tatagagcca
     3061 actgaactta agcatacttt agaacttaaa aagattaaaa atctttattg tgcaggacag
     3121 attaatggaa ctacaggtta tgaagaggct gcagcacaag gctttatggc gggaatcaat
     3181 gcaagcttaa gcatagatat gaaagagcct ttgattttaa ggcgtgatga agcttatata
     3241 ggagttttaa tcgatgattt agtagtaaaa ggcacaaaag aaccttatag aatgtttact
     3301 tcaagagcgg aatttagact gcttttaagg gaagaaaatg ctatacttag acttggaaaa
     3361 tatggctatg atttagggct tttaagcgag caagatttta cttatataca aaatatcgca
     3421 aacaatcttc aaaaaggact tgaattttta ctttctaaag aatttacgcc taacaaccaa
     3481 aataatgctt ttttagagag tttaggagaa gataaaattt cttctatagt caatcttcaa
     3541 aaaattgttg caagagcaag ttttgatata gaaaaattaa aaaaacttga ccctatattt
     3601 gaaaccatgg atcattactc cttaagagag attttaaatg aggcaaagta ttatcattac
     3661 attagtatgc aaaaagctca agtagaaaaa atgaaaaatc ttagtgagct taaaattcct
     3721 gaaaattttg attttaaaag tgtaagtggt ttgagtaatg aggttgtaga aaagcttaat
     3781 catcataaac ctccaaccat ttttgctgca agtcaaatca gtggaatcac tcctgcagcg
     3841 ttggatattt tgcaaattta tatcaaaatg caaaagaaaa aagcttaaat gcttgctttt
     3901 tttatttttt tatctacttt ggttttactt ttttggcgtc catggaattt acctatttgg
     3961 gtattttcta gcttgggggc tttttttgtt tttatttttc aattggtaga ttttaaagat
     4021 gcttgttttg ttttttcttt ggtttgggat agttctttaa ctttggttgg gttgattatc
     4081 ctttctttta gcttggaagc tttgggattt tttgatttta ttgcgagtaa aattttgtat
     4141 ttttctagag agaaaaatca agaaaaaatt tatatcagta caaaaaaaat gatgttattt
     4201 ttgttgattt ttgtattttt tctttctgca ttttttgcta acgatggagc gattttaatc
     4261 attacaccta ttattatagc tttattttca actcttaaag attgtaaaaa tcatgctttt
     4321 attttaagtt cttttttact tagcctttct tttttatgtg atgcaagttc aaacgctttg
     4381 gttatttcaa atttaaccaa tatcatcaca gcaaattatt ttaagataga atttttagaa
     4441 tttgctaaaa atatgttttt gccaaatttt tttgttttgc tttctactat agttacggtt
     4501 tttgtgcttt atgtgagagt tttacctaaa aggcttgaat ttaaattaat caaaaaagag
     4561 caaatttcat tgaaattgtt ttttctttgc atagtatttt tatttctttt tgttatcagt
     4621 ttttttatag gtgaaatttt taatattaaa ataagttttt ttgctttgct ttgggcggga
     4681 attttttggc ttattatttt aaaaattcaa ggtaaaaaaa gtattaaaat tctttttgaa
     4741 gcaccttatg gagttttgct ttttagtttt gggctttata tggtggtttt tgctttacat
     4801 aaaataggtg tgagtgaaat tttggttaaa agctatgctt ttttgatgca agataagagt
     4861 ggaatttttg gtgtggcttt gatttcagct tttggatctt ctgtgtttaa taatttgcct
     4921 atggttttaa tcggagattt ggcattaaaa gaatattttg agaatttttc ttttgattct
     4981 ttgatgattt atgcacatct tttaggtgta aatataggtc caaaacttac gccaataggt
     5041 tctttagcaa ctttgctttg gcttggagtt ttggctagaa aaggcattaa tatttctttt
     5101 tggcaatatt gtaaatttgg ctttttgata actttacctg tgcttgtttt ttctcttttt
     5161 gctcttattg tctaaatatc aaaacttgtt aaacaaagaa aaaatttatt ttaatttcga
     5221 taaactttta acttggttaa aaaataaaat cgaaaggagc aagttatggc tacatctgag
     5281 agtagacgaa gctttatggg ctttgcattt ggaagcgtag ctgctgtagg cggtgttttc
     5341 tcacttgttg cgatgaaaaa aacttgggat ccgcttccaa gtgttaaagc tgcaggtttt
     5401 actacagtag atttatcagg aatgcaagat ggagagctta gaactataga atggcgtaaa
     5461 aagcctattt ttatattaaa aaaagatgcg agtatgccaa aagatgaaaa acgtgatgtt
     5521 gtggtagata acgcagctta tactgtggtt ataggacttt gtacgcattt gggttgtata
     5581 cctgcttacc aaccaagtga gcaattgttt aaatgcgcct gtcatggtgg agaatttgac
     5641 acaagtggaa aaaatgtctt tggacctcct ccaaagcctc ttgaaattcc tccttttaaa
     5701 attgatggaa ccaagcttgt tttaggtgaa gagggtcctg aatataaaaa aatgatagcg
     5761 gaggcttaag atggcacaaa ttagaaaagc taatggtctt gtagattggc ttgatcaaag
     5821 acttgcggta cataaactgc ttgatgtttt aatggtaaaa tattggatac caaagcaaat
     5881 taactttctt tgggcaatgg gggttatttt aaccactctt tttgcagtgc tttttgttac
     5941 aggactttta cttgtgatgt attataaacc agatactgca cttgcttttg atagtgtgaa
     6001 taagactatt atgcaagagg tggactatgg atggctttgg cgtcacatgc atggtgttgc
     6061 cgcttctgtt gtatttttga ttatatacat acatatgcta acaggaattt attacggttc
     6121 ttataaaaaa ggtcgtgaga tgatttgggt tagcggtatg cttttgtttg ttgtattttc
     6181 tgctgaagct tttagtgggt atatgcttcc ttggggacaa atgagttatt gggcagctca
     6241 agtaatcact aatctttttg gagggatacc atttattggc cctgagcttg tgatttggat
     6301 tcgtggagat tatgcggttt ctgatccaac tttaacaaga ttttttatgc ttcatgtgtg
     6361 cttgcttcct atagttatca ttgctattat agcatttcac ttctattctt taagaattcc
     6421 tcatgttaat aatgaaattt ctgaagaact tgactttgat ttagaggctg aaaaatacat
     6481 ggcaggtgac acaaagggtt ctaaagtgat tcctttttgg ccaggatttt tatcaaaaga
     6541 ttttatgtat ataagctttt ttatgatttt cttcttttat ttggtctgtt ttaaatttga
     6601 atttgcaatg gatccaatta attttgatcc agctaatgcg cttaaaacac cagctcatat
     6661 ttatcctgag tggtatttct tatggagtta tgaagtttta agaggatttt tctttgatat
     6721 tgcaggtatt aaagcttttg atataggttt ggctgcattt ggtattgctc aagtgatttt
     6781 cttcttgctt ccttggcttg atagaagtga tgtggtaaaa ccagctcatg aaagaccttt
     6841 atttttcatt tggttttgga tattgcttat tgatttaatt gttttaactg tttatggaaa
     6901 attacctcca acaggtgtaa atgcttgggt aggattttac gcttctatag tatttttact
     6961 tttacttatt gtagttttac cggttattac tattatggag agaaaaggag ctaaacaatg
     7021 agagaaataa aaatattttt agttgtagta gtttttactg cacttgtata ttggggggta
     7081 gagccttatg ctcattcagt gatgaagcct catgttgctc ctgcaaattt tgattttgct
     7141 gttgaagata ctacttttgc aaaaggtata gttgaagcta aagaattagc tctaaaagat
     7201 gcacaagctt caggagatgc taaaagaata gagagtgcaa acaaagaact tgaaaaagca
     7261 aaagaagaat taagcaaggt tgaaacactt tgggcagatg ttgcaaagat cgattttgct
     7321 aagggtgatg caaaaaaagg taaagaattt tttgaaaata actgttttgc atgtcatggt
     7381 gtaaaagaag atggaatagc agctaatatt actgattctt ctatgggagt aataccgcct
     7441 gatctcagtg cagctggtgc tatttttgat gaaaaatttt tagcagcttt gattattcat
     7501 cctgcgcttg ctttaaaagt agatcataaa tttggtgatg cttttattat gacagcttac
     7561 aataaagata cttcaggaga aagtgaagaa gctacaaatg caaatatagc caatgtaatt
     7621 gcttatctta aagatgtgag tgttaaattt gaagccaatg aagatgctac tattaagaaa
     7681 gatgttgagg caaaatatgc taaaatggaa aatagtgctc aaaaagcagc tttaatggaa
     7741 aaagatataa aatttgctaa agataaagca acttttattg aggcttgcgg acgttgtcat
     7801 gatatgaaat acgatagctt ttttactcca tcaaatcaaa atgatttaaa aacttattta
     7861 ggttctgttc cacctgatct ttctatgatg ataagatctc gtggtgagca atatttacat
     7921 gattttatta ataatactca aaaacttctt ccaggaaccg ctatgccaag agtaggttta
     7981 acagaagctg cacaggctaa ggttgtatct tatattgatc aagtgggtga tagcaaaaaa
     8041 gaagaaagaa aaactacagg aatttatgta atgatattct ttgtaatttt aagtattttt
     8101 gctataggtt ggaagcgttc tgtttggtct aaattacatt agtattataa aatttttgcc
     8161 actattttat atctgtggca aaaattctat cttttcttca attttatcaa a
//
LOCUS       DARBBO010000072         7962 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.072, whole genome shotgun sequence.
ACCESSION   DARBBO010000072 DARBBO010000000
VERSION     DARBBO010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7962)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7962)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7962
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.072"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(48..377)
                     /locus_tag="SB854_001306"
     CDS             complement(48..377)
                     /locus_tag="SB854_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HEG0957295.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLESADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            complement(374..1648)
                     /gene="hemL"
                     /locus_tag="SB854_001307"
     CDS             complement(374..1648)
                     /gene="hemL"
                     /locus_tag="SB854_001307"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEG0957296.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTESTMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVSKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYDKLGKLAKKLTQGM
                     KKLADEKGLPLQVCHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            complement(1645..1992)
                     /locus_tag="SB854_001308"
     CDS             complement(1645..1992)
                     /locus_tag="SB854_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957297.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGT
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            2072..2920
                     /gene="folD"
                     /locus_tag="SB854_001309"
     CDS             2072..2920
                     /gene="folD"
                     /locus_tag="SB854_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HEG0957298.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDDPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVNVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVIDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            2930..3778
                     /gene="lepB"
                     /locus_tag="SB854_001310"
     CDS             2930..3778
                     /gene="lepB"
                     /locus_tag="SB854_001310"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HEG0957299.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGSQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPTYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3800..4960)
                     /locus_tag="SB854_001311"
     CDS             complement(3800..4960)
                     /locus_tag="SB854_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG0957300.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDEYIEENKLIIKKAPKQYNAYRYKGEELKKSEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMLQNASYLGIIKDDF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKDIFTPFNENKFGSGMILPLIKNEFLLISEENISELKKGDEITLLKI"
     gene            complement(4957..6213)
                     /gene="murA"
                     /locus_tag="SB854_001312"
     CDS             complement(4957..6213)
                     /gene="murA"
                     /locus_tag="SB854_001312"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEG0957301.1"
                     /translation="MTYLEIEGTNHLSGNVAISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDNVNATHLSAVLAKLHQMGFETLI
                     AEDSIALLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALTAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGVKITRLEE"
     gene            complement(6279..6707)
                     /locus_tag="SB854_001313"
     CDS             complement(6279..6707)
                     /locus_tag="SB854_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957302.1"
                     /translation="MKIDTLTKNFSNYQTQINKNNDLASNVHSDNVVKIQISDEARSL
                     SQANSKNEKEYEIKVSQEKIENHKDQNSIQSSKGGGNPALEALIAKLAEILAKIAELT
                     QKMTNANEQMKTTFQKQIDVLISQADVIQAQIQELQSQQA"
     gene            complement(6834..7400)
                     /locus_tag="SB854_001314"
     CDS             complement(6834..7400)
                     /locus_tag="SB854_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEG0957303.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDAFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKAIKYFKKNKKILGICLGHQCIAEIFGGRVSKMQNP
                     MHGKISKLYFKKDPIFKGIKKEIEICLYHSLHISSMPEKCKILAHNSENIIMAIKHKK
                     YPIYGLQFHPEAVLTQKGKKILKNFMKL"
     gene            complement(7397..>7962)
                     /locus_tag="SB854_001315"
     CDS             complement(7397..>7962)
                     /locus_tag="SB854_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HEG0957304.1"
                     /translation="KSSYKKYQNFTLFKLDEKIFHKKHSLFYNFPLPFKNPHKEGILK
                     LILYKDGRYEFQQSALKQNSNDILLLSDDKINSKSDNLYHKSSLRTFCNQHSYKWQQN
                     LCYDIAFFNEKDELCEGSRTNLILEKNSQFYTPQIQSGMLNGVYRNFLINLGLIKEKA
                     LFKQDLFEAENIYCINSVRGLKKVKLQ"
BASE COUNT         2535 a         1215 c         1235 g         2977 t
ORIGIN      
        1 taaatgaata atggcaaaaa tacaaaatag agctttttta tgttccatta tttgttcttt
       61 tctttttgaa ttttttcttt gatcaactca tctctttctt taaattcttc atagcttttt
      121 acttgaactt tataagcttt gtaaacatta agtatagcag cactgatccc ccaaaaaact
      181 ccaagccaaa aaagccaagg ataaggagta aattttttaa gtaaatatcc tattcccaca
      241 cctataaata cagcaacaac catagagata ccaagactta aaccatccgc agattcaaga
      301 gttttgcgaa tgattttttg tcttttgctg ttggaatttt ctaagtgatt tttttcttct
      361 tttaaaatat tgctcatatt cttttaaagc tttccctaac agcctctagt gttgtatcta
      421 taattttatc atccattttt gaacatataa agcctgtttc aaattgagaa ggtgctaaat
      481 aaattccatt ttcaagcata tttttgtgaa attttgaaaa taatgctaga tcggatttta
      541 atgcatcttg gtagtttgat acaggatctt tggtgaaaaa gtatccaaac atagaaccta
      601 catgacaaac ttgcagtgga agtccttttt catctgctaa ttttttcatt ccttgggtaa
      661 gtttttttgc taattttcca agtttgtcat aaagcttggt tttctttttg gcttttgtaa
      721 gacttgctat acctgcagcc attgctaaag gatttccact taaagttcct gcttgataaa
      781 ctccacccaa aggacttaaa atatccataa tttcagctct agaagcaaat gctgctgcag
      841 gtagaccgcc tcctattacc ttaccaaaag taattatatc tgcttggata tgattgattc
      901 cataggaacc aaggtaagat gctctatatc cactcattac ttcatcaaaa atcagcagag
      961 tttgattgtt tttacagatc ttagcaagtt cttctaaaaa atcttgttta gctggaacta
     1021 accccatatt tccagcaata ggctcaatga taacacatgc aatatcttta tttttttcaa
     1081 aaagctcttt aacgctattt atatcattat atttagctac taaagtgtgt ttagatacat
     1141 cttctaaaac acccaaagaa ctaggagagt taaaagtagc agcaccactt cctgcactca
     1201 ctaataatga atcagaatgc ccgtgataac atccttcaaa ttttaaaatt ttatcttttt
     1261 tagtaaaacc acgggcaaga cgaatagcac tcatggttga ttctgttcca ctgcttacaa
     1321 agcggatctt ttctaaatga ggaaaatcag ataaaacaag cttggcaagt tcagtttcta
     1381 ataaagttgg agctccaaaa cttgaacctt tatgaagtgc tttttgacaa gctttttgta
     1441 tatctttatc gcaatgtcca aaaagtaaag gcccccagct ttgaacatag tctatataag
     1501 aatttccatc tatatcgaaa atataagcac cttttccatg agaaataaat tttggctcac
     1561 tttgaacatt tgcaaaagca cgaactggag aatttacacc acctgcgatg aatttacacg
     1621 cttctttaaa agcttttttg tttgtcattt ttcttccttg ctaaattgct tgatgtaatt
     1681 atataaagtt acaatttcat catttgttaa agagtaattt ggcatgattg attttgcgtc
     1741 tttactctga ttaagagaat ttttaaaatt ctcaaaacta agattttgta tacttggaac
     1801 tttataagct gttttaatac catttttcat ataatatcct aaaatttgtt cgcttccatc
     1861 tgttccatga cattctttac aactaatgcc ccttggattt tcataaagca ttttagagta
     1921 ttctttaaga gtgataaaat cagcaccaaa aagactgata ctaaataaaa aaaacattaa
     1981 gacaattttc aaagtttcac cttgttaatg aagttttaat atgatacaat ttttacttta
     2041 aaaaagtgat taaatttata gaaggaaaat aatgactttg cttgatggta aagctttaag
     2101 cgcaaaaatt aaagaagaat taaaagaaaa aaatcaattt ttgaaaagca aagggattga
     2161 aagctgttta gctgttatct tggttggaga tgatcctgca agtcaaactt atgtaaaatc
     2221 taaggctaaa gcctgtgaag aatgtggaat taaatcttta gtttatcatc ttaatgaaaa
     2281 tactacacaa aatgaacttt tggcattgat taatacctta aatcacgatg atagtgttca
     2341 tggaattttg gttcaacttc ccttacctga tcatatttgt aaagatttaa tacttgaaag
     2401 cattataagt agtaaagatg ttgatggctt tcatcctatt aatgtaggat atttaaattt
     2461 aggcttagaa agtgggtttt tgccttgtac tccacttgga gttatgaagc ttttgaaggc
     2521 ttatgaaatt gatttagaag gaaaagacgc tgttattata ggtgcttcaa atatagtagg
     2581 tcgtcctatg gctactatgc ttttaaacgc tggagctaca gtaaacgttt gtcatattaa
     2641 aaccaaagat ttgagccttt atactaggca agctgatttg attatagtag cagcaggttg
     2701 tgtgaattta cttcgatcgg atatggtaaa agaaggagtg attgttattg atgttggaat
     2761 caatcgtctt gaaagtggaa agatagtagg agatgtagat tttgaagagg tatctaaaaa
     2821 atctagttat ataactcctg ttccaggtgg agtaggtcct atgactatag ccatgctttt
     2881 agaaaacaca gttaaatctg ctaaaaatag acttaattag ggaaaatcta tggaaatttt
     2941 aaagaaatta tataaatttt cacagtcttg gactggaact gtagttattg ttcttttggt
     3001 gatttttttc tttatacaag cttttgttat tccttctggt tctatgaaaa acaccttatt
     3061 ggtaggggat tttttatttg ttaaaaaatt tagctatggt atcccaactc ctcatattcc
     3121 ttggttggaa attcctgttt tgccggattt taataaagat gggcatttga taaaagcaca
     3181 agggtcacaa agaggagata tagttgtttt tagaaatcct agaaatgaaa aagaacactt
     3241 tgtaaagcgt tgtgtaggca caggaggaga taggatagtt tatgcaaata aaacacttta
     3301 tgtaagaatg catgagggtg atgaatttat gaaagaacat tatccgaatg atcttgttac
     3361 tcttggaggg caaatttatg taaaagaacc ttataaacaa aaaggtattc attatgatcc
     3421 aaaaaaagat atagaaagcg atattttacg ctttcttagc ataggtgatt ttgctatgtc
     3481 tccaacttat attaaagaac ttggaaatca tataggtttt agcggcggaa atgcttatgt
     3541 ttttgatgta cctgaaaatg agtatttcat gatgggtgat aatcgcgatt attcttatga
     3601 tagtcgtttt tggggttctg ttccttatag gttgatagta ggtaaacctt ggtttgtata
     3661 tttctcttgg gataaagata aaaatgttcg ctgggaaagg atagggcgtt ttgttgatac
     3721 cttggaaaat gatgaacaat atatccatga tcatgatgat gaggataaat taagctaatg
     3781 tttgtgaaaa acacaaacat tatattttta aaagcgtgat ttcatcacct ttttttaatt
     3841 cacttatatt ttcttcactt ataagtaaaa attcattttt aataagtgga agtatcatac
     3901 cagatccaaa tttattttca ttaaatggtg taaaaatatc tttttctaaa tttcctaaaa
     3961 tgagattatt tcttccgctt ttaagcttta aatccatacc cattttgcca taaaatgtta
     4021 aaggattgtc taggtttcca cttaataaat taatgatttt tttagcaaaa ataaaacaag
     4081 aaagataagc tgccataggg tttcctggta aaatcaatac gaaattttca ccttttctat
     4141 aaagcttagt aggtcttgca gggcgtgctt ttaaaccttt aaaaagcgga gtaaagccta
     4201 attcatctaa agctttttcc ataaaatcag cctcgccaac gcttgcacct cctgaagtga
     4261 ttaaaagatc aaaatttgta ttttctaaag cctctttagt gcttttaaaa tcatctttga
     4321 taatgcctaa ataagaagca ttttgaagca tagttagtaa aggcaaagca ttggcattat
     4381 aaatactttc ttcatcgcat tcttgccaag gttcttttag ctcatttcca cttgaaaaaa
     4441 tacctatgcg aatttttctt atgacttcta ttttataaag cccttgagaa gcaagcaggg
     4501 cgatatgttt atcattaagt ttggtacctt tttgaagtaa aatttcactt ttttttaatt
     4561 cttcaccttt atagcgatag gcattgtatt gtttaggagc ttttttaatg atgagtttat
     4621 tttcttctat atactcatct tctagcatta agatagtatc agcatttttg ggcattttag
     4681 cccctgtcat gattttatag cattcatttt tagcaactgt ataaaaattt ttatctcctg
     4741 caaaaatagt ccctttaatc tccaaagctt cattgatatc agtataatta aaagcatagc
     4801 catcaagagc agcattgtca aaactaggta gattttttct agcgtataaa tctttagcta
     4861 aaattctatc ctttgctttt tcaaggctaa taagctcact ttcatctaaa catgaaattt
     4921 gattttctaa gtcttttaag gtttcaaaga tatttttcat tcttcaagcc ttgtgatttt
     4981 cacacccaaa tctttaaatt tttcttctaa attttcataa cccctatcaa gatggtaaat
     5041 tctatggact ttgcttgtac ctttagctgt aagagctgct aagataaggg ctgaagaagc
     5101 gcgcaaatct gtagccatga catcagcagc gttaagttct tttccgccta ctatggtagc
     5161 aatatgacca ttgagtttaa tatccgcacc cattcttaaa agttcactta catgcatgaa
     5221 acgattttca aatagtcttt catcaataat actagttcca ttagctttta aagctagtgc
     5281 cataaactgc gcttgcatat cggttggaaa gcctggatat tcacttgtca tgatttctac
     5341 aggtttaatt tctttagcag gaagtagggc gatactatct tctgcaatca aagtttcaaa
     5401 acccatttga tgaagttttg ctaaaactgc actaagatga gtggcgttaa cgttatctaa
     5461 agtaatttta gaatttgtaa tagcccctgc acaaagataa gttcctgcct caattctatc
     5521 aggtataacg ctaaattctt taaattctaa aagttctcca tcactaccat aaatttcaag
     5581 ttcatctgta cctatgcctt tgatttcaag tcctgcgtct tttaaaactt cgcaaagttg
     5641 aactacttcg ggttcttttg caacatttaa gagtttggtt ttacctttag ctagagctgc
     5701 tgccatgatg atgttttcac tacctgtaac cgtgatttta tcaaaaagaa tttcattgcc
     5761 ttttaaattt ccactagcta cgacatagcc ttgtttgatt tgtatatttg cccccatttt
     5821 ttctaaggct aaaagatgta aatcaatagg tctttgtcct atggcacatc caccaggcaa
     5881 agatacttca caatgcccaa aacgagcaag caaaggccct agagtaagta tagaagcacg
     5941 cattttacgc acaatgtcat atttagctat ggtttgatta agagtgtttg tgtttaataa
     6001 agcactattg ttttgaaaat tgactttagc tcctaaattt tctagcaaag atataagagt
     6061 ttttatatca gcaacattag gaacattgtt gatttttact tcgtttttag caagtatgct
     6121 tgaaacgatc aagggtaggg cggcattttt tgccccgctt attgcaacat ttccgcttag
     6181 atgatttgtg ccttcgattt ctagataagt catatttttc cttgaaaaag tttaaaaatg
     6241 caccattata gcattcttaa acttttgaaa aaatataatc aagcttgttg gctttggagt
     6301 tcttgaattt gagcttgaat tacatctgct tgagatatta gcacatcaat ttgtttttga
     6361 aatgtcgttt tcatttgttc gttagcgttt gtcatttttt gagtaagttc tgcaatttta
     6421 gctaaaattt cagctaattt tgctattaaa gcctctaatg cgggatttcc gccacctttg
     6481 ctactttgaa tggaattttg gtctttgtgg ttttctattt tttcttgact tactttgatt
     6541 tcatattctt tttcattttt tgaatttgct tgacttaaac ttcttgcttc atctgaaatt
     6601 tgaattttaa ccacattgtc actatgaaca ttacttgcca aatcattgtt tttgtttatt
     6661 tgtgtttgat aattgctaaa attttttgtc aaagtatcta ttttcatctt aaatcttttt
     6721 aaattaattt atattgttat cggttttttt atttataaat ttatattaat gataattatt
     6781 ttaaggatat tttattttag attttcatat ttatatttta aatgcaaaaa agactaaagt
     6841 ttcataaagt ttttaagtat ttttttgcct ttttgagtta aaaccgcttc agggtgaaat
     6901 tgcaatccat aaataggata ttttttatgt ttaattgcca taataatatt ttctgaatta
     6961 tgagctaaaa ttttgcattt ttcaggcatg gaactaatgt gtaaagaatg atataagcaa
     7021 atttcaattt cttttttaat acccttaaaa ataggatctt ttttaaaata aagtttagaa
     7081 attttaccat gcatgggatt ttgcatttta gaaaccctac cgccaaaaat ttcagctata
     7141 cactgatgtc ctaaacatat acctaaaatt tttttatttt ttttaaaata tttgattgct
     7201 tttaagctta atttagattc cttaggagaa tgagggccag gagagatgat aagatgagtg
     7261 aaatcaaatt tttctaattc tttagctttt ttaaaggcat cattttttat cactttacat
     7321 tcaaaaccaa gttctttaag ataatagatg atggtataac taaaagaatc ataattatct
     7381 ataaataaaa ttttcttcat tgtaatttta ccttttttaa accacgcacg gaattaatac
     7441 aataaatatt ttctgcttca aataaatctt gtttaaataa tgctttttct tttatcaaac
     7501 caagattgat taagaaattt ctatatactc catttaacat accgctttga atttgtggag
     7561 tataaaattg agagtttttt tctaagatga gattggttct tgagccttcg caaagttcat
     7621 ctttttcgtt aaaaaaagct atgtcataac acaagttttg ctgccatttg tatgagtgtt
     7681 gattacaaaa agtacgcaaa gagcttttgt gatagagatt gtcacttttt gagttaattt
     7741 tatcatcact taaaagcaaa atatcgtttg aattttgctt taaggcactt tgttgaaatt
     7801 cgtatcttcc gtctttgtat aaaataagct ttaaaattcc ttctttatgt ggatttttaa
     7861 agggtagggg aaaattataa aataaagagt gttttttgtg gaaaattttt tcatcgagtt
     7921 taaaaagtgt aaaattttga tattttttat aagaactttt tt
//
LOCUS       DARBBO010000073         7741 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.073, whole genome shotgun sequence.
ACCESSION   DARBBO010000073 DARBBO010000000
VERSION     DARBBO010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7741)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7741)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7741
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.073"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..366
                     /locus_tag="SB854_001316"
     CDS             <1..366
                     /locus_tag="SB854_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957305.1"
                     /translation="SHYALKILERWAENYPNTIKTLGMSDLMTLVLPQEKMEIEILSS
                     ANSKKQIENGLTTVEILQEAEIDLNYYIKTNPQLYSPLFQETMQQDKVQKLEESINDD
                     YWKLQTQIMDLQHDITKQE"
     gene            complement(455..2242)
                     /locus_tag="SB854_001317"
     CDS             complement(455..2242)
                     /locus_tag="SB854_001317"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002905736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction-modification system subunit
                     M"
                     /protein_id="HEG0957306.1"
                     /translation="MNDTQQKQLGSTLWAIADKLRGAMNADDFRDYMLSFLFLRYLSD
                     NYEEAVKKELGSDYQKSELETQKNGTNPDTYINELKAVIIKYSNSLSPKKLGLQEDEK
                     DHQKIEKARQEYVDDNNKMLYSHNVIPLAVWYIRNLDQVDMLEKQMRRKIHYVIKPAY
                     LWSNIYELARTQNSQLLKTLQSGFKYIENESFESRFRGLFSEVNLDSDKLGKTYPERN
                     NLLYSIIMEIANRLDEFPNEADLLGDAYEYLIGQFAAGSGKKAGEFYTPQQVSTILSR
                     IVSLDSQDPSTGKKSKLKNVLDFTCGSGSLLINVRKQFGANGIGQIYGQEKNITTYNL
                     ARMNMLLHGVKDSEFQIHHGDSLLNDWNILNEMNPAKKMQFEAVVANPPFSYRWQPKE
                     EMAEDFRFKNYGLAPKSAADFAFLLHGFHFLSDDGTMAIILPHGVLFRSGVEEKIRTK
                     LLKDGNIDAIIGLPANLFFSTGIPVCVLVLKKCKKYDDVLIINASEYFEKGKRQNTLL
                     PEHIDKIIKTYQYRKEDKRYSRRVSMEEIEKNGYNLNISRYVSTAPEEEVVDIEEVQQ
                     ELEKIENEIKEAKTKHNEFLKELGLKLIP"
     gene            complement(2255..3379)
                     /locus_tag="SB854_001318"
     CDS             complement(2255..3379)
                     /locus_tag="SB854_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG0957307.1"
                     /translation="MSGTKQFATLKRFARNIRDTLGTADATDTKNYYLLFAYNGTGKT
                     RLSVEFKNLGKRRIRGSEETTRDTLYYNAFTEDLFYWDNDLEGDTDRRLFFNTNSRFF
                     DGLRDIEMDTRIRGFLQIHADFDFTIHYDDGYVSFSRKVQTRTGEETITGIKISRGEE
                     NLFVWCFFLAIVQLVKDEALSYDWVKYIYIDDPISSLDDNNVVALACQLSELLKDCKI
                     KTVISTHHALFFNVMYNELRKESTASRFLSFDKETNKYIVKNTGDTPFFHHIALLKEL
                     KKVADSGKIYTYHFNILRNILEKTAAFHGFDDFSACIKQEDENLDDVIFARITNLLSH
                     GNHSIFNPVEMVQDNKEIFKNILNRFLRNYKFNDKLFTER"
     gene            complement(3376..4572)
                     /locus_tag="SB854_001319"
     CDS             complement(3376..4572)
                     /locus_tag="SB854_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HEG0957308.1"
                     /translation="MNKKKEIVPKLRFPEFSKSHWGITRLNALADKITERNKGDDTSR
                     VFTNSATEGVVDQEEYFDRNIANKNNLTNYFVVEKGDYVYNPRISTTAPVGPISKNKL
                     GIGVMSPLYTVFRFRNKENDFYEHFFLTNLWHAYIKKLSNTGARYDRITISVDNFMKM
                     PLPYTSPDEQQKIADCLSSIDELIDAESRKLKVLEKYKKGLMQKLFPAEGKTLPEWRF
                     PECKNTYEIKRKRLADVCYYKSSALTTNDVKMDGKYNLYDANKIIGKVNIYASEDRYI
                     TIIKDGAGVGRVRLMDGYTNFVGTMGMINNNEFVTIDYLYYLLQTIDFRVYAIGGTIP
                     HIYFRDYSKKEIFLPHIGEQQKIADCLSEIDTIITEQSNKVEQLKIHKKGLMQGLFPS
                     LEEVDV"
     gene            complement(4565..7570)
                     /locus_tag="SB854_001320"
     CDS             complement(4565..7570)
                     /locus_tag="SB854_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HEG0957309.1"
                     /translation="MKSEKIIEQGFIEKLKNLKYIYREDIKDKASLEENFRKHFQELN
                     RVRLSDSEFARLKESIITPDVFSAAKILRETNTFKRGDDTPLQYTLVNTNDWCKNEYE
                     VINQLRINTENSHHRYDVIILINGIPVVQVELKSLQITPKRAMEQIVDYKNDPGNGYT
                     NSLLCFMQLFIVSNESNTYYFANNNKEHFAFDADERFLPVYQFSDKDNKKITHLHDFS
                     EAVLRKCALGELISKYMVLVASEQKMMIMRPYQIYAVKAIMDCIEQNRGNGYIWHTTG
                     SGKTLTSFKASTLLKDNHKIVKCLFVVDRKDLDRQTREEFNKFQEGCVEENTNTETLV
                     KRLVSEDYRDKVIVTTIQKLGLALDEDNKRSKEKKKKGELTYKDRLAPLKDSRIAIIF
                     DECHRSQFGENHKAIKNFFPKAQLFGFTGTPIFEENATYKQVDGTIGSYTTTKDIFEK
                     ELHAYTITHAIDDRNVLRFHIDYFKPENDRDASKINEEQQKKAVVQTILSKHDTITNN
                     RRYNAILATSSINDAIEYYNLFKEAQQNFIDADDSEFMPLNIACVFSPPAEGNKDVQQ
                     IQEDLPQEKEDNKKEPDKKKQALTSIIKDYNEQYGTSHDINNFDVYYQDVQQRIKDQK
                     YTNADYPHKNKIDITIVVDMLLTGFDSKYLNTLYVDKNLKYHGLIQAFSRTNRILNDT
                     KPYGNILDFRSQSDEVDKAIALFSGENNSNRAKEIWLVDPAPKVVEKLDKAVSELEKF
                     MESQGLECRPEEVNNLKGDTARCEFINKFKEVQRLKTQLEQYTEIEEKDAEKIEELLP
                     EDILRAFRGAYIDVAQRLKSEQGKENEDKNPEVEQLDFEFVLFSSAIIDYDYIMRLIA
                     KYTQTEPKKQKMSKEQLIGMLSATSNLLDEREDIIEYIDSLQVGVALDEKEIKAGYQK
                     FREQKNNQEINIIAKKHGIEIQSLQSFIQEIIDRMIFDGEKLGDLLAPLDLSWRERTQ
                     KELDLMADLIPLLKKLADGREIVGLNAYE"
BASE COUNT         2335 a         1504 c         1118 g         2784 t
ORIGIN      
        1 tctcattatg ctttaaaaat attagaaaga tgggctgaaa attatccaaa tacaatcaaa
       61 actttaggaa tgtcagatct aatgactttg gtattaccac aagaaaaaat ggaaattgaa
      121 attttatcta gtgcaaattc aaaaaaacaa atagaaaatg gtttaactac tgtggaaata
      181 ttacaagaag cagaaataga tttgaactat tatataaaaa caaatcctca actttattct
      241 ccactttttc aagaaaccat gcaacaagat aaagtacaaa aactagaaga aagtattaac
      301 gatgactact ggaaactaca aacacaaatt atggatttgc aacatgacat aaccaaacaa
      361 gagtaaaaaa aattataaac caaacttatg ataaaattga aattcataaa aaatactgtc
      421 gtgcattcag tattttttat gtcaaaataa aattttatgg aattaatttt aatccgagct
      481 cttttaaaaa ttcattatgt ttagtctttg cttccttaat ttcattctca attttttcaa
      541 gttcctgttg cacttcttca atgtcaacaa cttcttcctc gggtgctgta ctaacataac
      601 gagaaatatt tagattatat ccatttttct ctatttcctc catagaaact cggcgagaat
      661 agcgtttgtc ttcttttcgg tattggtatg ttttgatgat tttatcaata tgctccggta
      721 aaagcgtatt ttgacgcttc cctttttcaa aatactcact tgcattaata atcagcacat
      781 catcatactt tttacacttt ttcagaacta aaacacatac tggaatacct gtggaaaaaa
      841 agagatttgc cggtaaacca atgatagcat caatatttcc atctttgaga agttttgttc
      901 tgattttttc ttcaacgcca ctacggaaca atacaccatg cggtagaata atcgccattg
      961 ttccatcatc gcttaaaaaa tggaacccgt gcaataaaaa agcaaaatct gctgctgact
     1021 ttggagcaag tccataattt ttgaatctga aatcttctgc catttcttct ttgggttgcc
     1081 atctatagct gaaaggtgga ttggctacga ctgcttcaaa ctgcattttt ttcgcaggat
     1141 tcatctcatt taagatattc caatcgttta ataaggaatc tccgtgatga atctgaaatt
     1201 cagaatcctt tacaccatga agcaacatat tcatacgagc aaggttgtag gtagtaatat
     1261 ttttctcctg cccatagatc tgaccgatcc catttgctcc aaattgtttt cgcacattga
     1321 ttaaaagaga acctgaaccg caagtaaaat caagcacatt ttttagtttg ctcttttttc
     1381 cagtgcttgg atcttgactg tcaagagata caattcggga gaggatagtt gaaacctgct
     1441 gtggcgtata gaattcaccc gcttttttac ctgaaccagc agcaaactga ccaatcaaat
     1501 attcgtaggc atcgcccaaa agatctgctt catttggaaa ttcatcaagt ctgtttgcaa
     1561 tctccataat gattgagtac agtaagttat tcctttcagg atatgttttt cccaatttat
     1621 cggaatcaag atttacttct gagaataaac cacgaaatct gctttcaaat gactcattct
     1681 caatatattt aaagccactc tgcaaagttt tcagcaattg actattttgt gttcttgcca
     1741 attcgtatat attactccac aaatatgccg gttttatcac ataatgaatt ttacggcgca
     1801 tttgtttttc aagcatatca acttgatcca aattgcgaat ataccagact gcaagaggaa
     1861 ttacattgtg gctataaagc attttattgt tatcgtccac atattcctgt cttgctttct
     1921 caattttttg atggtctttt tcgtcctctt gtaagcccaa tttctttgga gaaagagagt
     1981 tgctatactt aatgattaca gctttgagtt cattaatata ggtgtccgga tttgttccat
     2041 tcttttgtgt ttcaagctca cttttctgat aatcacttcc caattccttt tttactgcct
     2101 cttcataatt atcggacaaa tagcgcaaaa agagaaaaga caacatataa tctctaaaat
     2161 catcggcgtt cattgcgcca cgcagtttat cagcaatcgc ccataatgtt gagcctaact
     2221 gtttttgttg tgtatcattc ataatttgct acctctatct ttctgtaaac agcttatcat
     2281 taaatttata atttctcaga aatctattca gtatattttt gaatatttcc ttattatcct
     2341 gaaccatttc gacaggattg aatatcgagt gattgccatg acttagtaga tttgtgattc
     2401 gtgcaaaaat cacatcatct aaattctcat cttcttgttt tatgcaggct gaaaaatcat
     2461 caaatccatg aaatgctgct gttttctcaa gaatatttct taaaatatta aaatgataag
     2521 tatagatttt cccgctgtca gccacttttt ttaattcttt caatagtgca atatgatgaa
     2581 agaacggggt atctccggtg ttttttacta tgtatttgtt tgtttcttta tcaaaactca
     2641 aaaaacgact tgccgtactt tcttttctca actcattgta catcacatta aaaaatagtg
     2701 cgtgatgggt tgatataaca gttttaatct tacaatcttt caacaattct gaaagttgac
     2761 atgctaacgc tacaacatta ttgtcatcaa gggacgaaat cggatcatca atatagatat
     2821 atttcaccca atcataagat aaagcttcgt cttttaccag ttgaacaata gcaagaaaga
     2881 aacaccaaac aaataaattt tcctcaccac gagagatttt tattccagta atagtttcct
     2941 ctccggttct ggtttgcact tttcttgaaa agctgacata tccatcatca taatgaattg
     3001 taaagtcaaa atctgcatga atctgcaaaa atccccgtat acgagtgtcc atttcaatgt
     3061 ctctcaaacc gtcaaaaaag cgagaatttg tattaaaaaa caggcgtcta tcagtatccc
     3121 cttctaaatc attgtcccaa tagaatagat cctcggtaaa ggcgttataa tacagtgtat
     3181 ctcttgttgt ttcctcactg cctcgaattc ttcttttacc taaattctta aattcaaccg
     3241 aaagccttgt ttttccagtt ccattatacg caaacaaaag gtagtaattt ttcgtatctg
     3301 tcgcatccgc agtaccaagc gtatcacgaa tattgcgtgc aaatcttttt aaggttgcaa
     3361 attgttttgt accactcata catctacctc ctcaagagaa ggaaacaatc cctgcattaa
     3421 tcctttttta tgtattttta actgttccac cttgtttgac tgctcggtaa ttatggtatc
     3481 tatctcagac aagcaatctg caattttttg ttgttctcct atatgtggca gaaatatctc
     3541 tttttttgaa taatctctaa aataaatatg tggaatagtt cctcctattg catataccct
     3601 aaaatcaata gtttgcaata ggtaatataa ataatctatt gtaacaaact cattattgtt
     3661 tatcattccc attgttccaa caaagtttgt ataaccatcc attaaacgaa ccctaccaac
     3721 accagcacca tcttttatta ttgtaatata tctatcttca gaagcataaa tatttacttt
     3781 accaattatt ttatttgcat catataaatt atatttacca tccattttaa catcatttgt
     3841 agttaatgca gatgatttat agtaacaaac atcagccaat cgttttcttt ttatctcata
     3901 agtgttttta cactcaggga acctccattc aggcagagtt ttcccctcag cagggaacag
     3961 cttttgcatc aacccttttt tgtatttttc taatactttc agttttctgc tttctgcgtc
     4021 aatcagttca tcaatagagg ataggcaatc agcaatcttt tgttgttcat caggagaagt
     4081 atacggaagt ggcattttca taaaattatc cactgatatt gttatacgat cataccttgc
     4141 acctgtattt gaaagttttt ttatataagc atgccataaa tttgtaagaa aaaaatgctc
     4201 ataaaaatca ttttctttat ttctaaatct aaatacagtg tacagaggag acatcacccc
     4261 aataccgagt ttatttttag aaataggacc taccggtgca gtggttgata ttctggggtt
     4321 atagacataa tcaccttttt ccacaacaaa ataatttgtt aggttatttt tgtttgcaat
     4381 attcctatca aagtattctt cttgatctac aacaccttca gtagcagagt tcgtaaaaac
     4441 cctactagtg tcatcacctt tatttcgttc tgttattttg tcagcaagtg cattaagtcg
     4501 agtaatcccc caatgtgatt tagaaaactc gggaaatctt aacttaggca ctatttcttt
     4561 cttcttattc atacgcattc aaccccacaa tttcacgacc atctgccagt ttctttaaca
     4621 atggaatcaa atcagccatc aaatccagtt ctttttgcgt tctttctctc cagcttaggt
     4681 caagcggtgc caaaaggtca ccgagttttt ctccgtcaaa aatcattctg tcaataattt
     4741 cctgaataaa cgattgcaaa ctttggattt caatgccgtg ttttttcgca atgatattga
     4801 tttcctgatt gtttttctgc tctctgaatt tctgataccc tgctttgatt tctttttcat
     4861 ccaaagccac gccaacttga agagaatcga tatattcgat gatatcttct ctttcatcaa
     4921 gcaaattgga agtagccgaa agcattccga tgagttgttc tttactcatt ttttgctttt
     4981 tcggctcggt ctgggtgtat tttgcaatta atctcataat atagtcgtag tcgataattg
     5041 cagacgaaaa gagaacaaac tcaaaatcga gctgttcaac ttcaggattt ttatcctcgt
     5101 tctcttttcc ttgctcagat ttcagccttt gtgccacatc aatgtaagca ccacggaacg
     5161 cacgcaggat atcctccggc aacagctcct cgattttttc tgcgtccttt tcttcaattt
     5221 ccgtgtactg ctccaactgc gttttcaaac gctgtacttc cttgaattta ttgataaatt
     5281 cacaccttgc ggtatcacct ttcaagttgt ttacctcttc cggtctgcac tccaatccct
     5341 gagattccat aaacttttct aattcactta ctgccttatc tagtttttca acaacctttg
     5401 gtgctgggtc aacaagccat atttcttttg ctcggttact gttattttca ccggaaaaca
     5461 gagcaatagc tttatctact tcatcagact ggcttctgaa atcaagaata ttaccataag
     5521 gttttgtatc atttaaaatt cgatttgttc tggaaaatgc ctgaatcaag ccatgatatt
     5581 ttaagttttt atctacatac aaagtattca gatacttaga atcaaaacca gtcagcagca
     5641 tatccacaac aatggtaatg tcaattttgt ttttatgagg ataatctgcg ttagtatatt
     5701 tctggtcttt aattctttgc tgtacatcct gataatacac atcaaaattg ttgatgtcat
     5761 gactagttcc atactgttca ttatagtctt tgataatact ggttaacgct tgtttctttt
     5821 tatcaggttc ttttttgttg tcttcttttt cctgtggaag atcctcctga atttgctgaa
     5881 cgtccttatt gccttctgcc ggcggcgaaa atacgcaggc aatattcaat ggcataaatt
     5941 cactgtcgtc agcatcaata aaattttgtt gtgcttcttt gaacaagttg taatattcaa
     6001 tagcatcatt gatggatgat gtagctaaaa tagcgttgta tcttctgtta tttgttatag
     6061 tatcatgttt tgacagaata gtttgtacca cagccttttt ttgttgttcc tcattgattt
     6121 ttgaagcatc tctgtcattt tccggcttga agtagtcaat atgaaatcgc aatacatttc
     6181 tgtcatcgat ggcatgagta atcgtataag catgtagctc tttttcaaaa atatcctttg
     6241 tagttgtata agaaccgatt gttccatcaa cttgcttgta agttgcgttt tcttcaaaaa
     6301 taggtgtgcc agtaaatcca aacagctgag cctttgggaa aaagtttttg attgctttat
     6361 ggttttctcc aaactgtgaa cgatgacatt catcaaaaat aattgcaatt ctgctatctt
     6421 ttaaaggcgc caacctatct ttgtatgtga gctcaccttt tttctttttc tctttacttc
     6481 gcttattatc ttcgtcaagt gccaaaccca acttttgaat ggtcgttaca atgactttat
     6541 ctcgataatc ctccgaaaca agtcttttta ccaaagtttc cgtattggtg ttttcttcca
     6601 cacatccctc ttggaactta ttaaattcct ctctggtctg tcggtcaaga tcctttctgt
     6661 ccaccacaaa aagacatttt actattttgt gattatcttt taacaaggta gatgccttaa
     6721 aagatgtgag ggttttaccg cttccagttg tatgccaaat atagccattt cctctgtttt
     6781 gctcaatgca atccataatg gctttaaccg cataaatttg atatggtctc ataatcatca
     6841 ttttctgttc acttgctact aagaccatat atttgctaat cagctcaccc aaagcacatt
     6901 tacgcaacac agcctcagaa aaatcgtgca aatgggtgat ttttttatta tccttatcgg
     6961 aaaattgata tacaggcaaa aagcgttcat cagcatcaaa agcaaaatgc tctttgttat
     7021 tgttggcaaa atagtaggta ttactttcat tgctgacaat aaaaagttgc atgaaacaga
     7081 gcaaagaatt tgtatatcca tttcccggat catttttata atcaacaatc tgctccattg
     7141 ctcttttagg agtaatttgg agcgacttta attcaacttg tacaactgga ataccattaa
     7201 tgagaataat aacatcatat ctatggtgac tattttcagt gttaatacga agctggttaa
     7261 tcacctcata ctcgttttta caccaatcgt ttgtgtttac aagagtgtac tgtaggggtg
     7321 tatcatcacc ccttttaaat gtgttcgttt ctctcaagat ttttgccgct gaaaacacat
     7381 ccggtgtaat gatgctttct ttcaatcttg caaattcaga atcacttaat ctaaccctat
     7441 taagttcttg aaaatgcttt ctaaaatttt cctctaaaga ggctttatct ttaatatctt
     7501 ctctgtatat atactttaaa tttttaagtt tttcaataaa accctgttca attattttct
     7561 cacttttcaa tagtatgtac cctttcttaa gcttaaaact tttttaatta aaatactata
     7621 cgatagtata ttataatata aatcaaacat gtattctata atatatcaag atacataaaa
     7681 tattttaaaa agtatacatt atataatata atacaacata tatagaatat agctttattc
     7741 t
//
LOCUS       DARBBO010000074         7659 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.074, whole genome shotgun sequence.
ACCESSION   DARBBO010000074 DARBBO010000000
VERSION     DARBBO010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7659)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7659)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7659
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.074"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            106..981
                     /gene="zupT"
                     /locus_tag="SB854_001321"
     CDS             106..981
                     /gene="zupT"
                     /locus_tag="SB854_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HEG0957310.1"
                     /translation="MQFTFEQIFIAMLLTLFAGFSTAIGSIIAFFSRKDDLRVLSLGL
                     GFSAGVMIYISFMEILPTALKDFKNHYDSHWAELLGLACFFGGILISLLIDKLIPEDV
                     NPHEPKEDLSELKICPLPQKGQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGDKKKAFIYSALSGFA
                     EPLGAFVGALILLPFIGDLTLAISFAVVAGIMVFISLDELLPAAKTYDKAHDSLYGLI
                     VGMAIMALSLNLLGQ"
     gene            complement(1005..3521)
                     /locus_tag="SB854_001322"
     CDS             complement(1005..3521)
                     /locus_tag="SB854_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HEG0957311.1"
                     /translation="MLDRRKFLKIGASLSALPLIPSLSAGKTVEASKVSLGLVKNGEV
                     ITAAHWGILKLTIKDGKIVKSEPWEKVTKMDNPLQHYTADMVYKSRVKYPYVRKSYLE
                     NPDNPKPELRGKDEFVRVSYDEAIKLIAKELKKTRDSKGASAIFGGSYGWKSSGNMQN
                     SRILLHRFLNVTGGFVGATGDYSTGASQVIMPYVVGSIEVYEQQTSWENILSDSKYVV
                     IWGADPLSTLRIAWTSNEQRGLAYFEKLKNSKIKVICIDPVKTTTAKFLNAKWIAPRP
                     NTDVALMMGMASHLIAKKKVNYEFLDTYTTGFDKFKDYLEGKEDGVKKDTKWASKICG
                     IDEKTIKNLAETFYDNPTMIMSGWGMQRAHHGEQPHWMLVTLCAMLGQIGTKGGGFGL
                     SYHYSNGGVPTCKGGVIGGMTAGSLGIWKNGKFKGLSKAEASSEGAEWLQNAASYSFP
                     VARIADALLHPGKTIDHNGAKITYPDIDFIYWVGGNPLVHHQDTNTNVKAWRKPRTVV
                     VNEIYWTPTAKMADIIMPVTSSYERDDITMTGDYSNMHIAPMKQAVEPVGESKDDYVI
                     FSDICKIYGKDVFNAYTENGKKAKDFIKEYYNSALKQTQSFGEAFATPMPSFEEFWAK
                     NEPITFEPTAESLEWTRFSEFIEDPILNALGTDSGLIEIYSETIKNYNYDDCKAHPTW
                     FEPIEWLGNASKEAPFHLLTNHPRDRLHSQLCHTSLRDTYAIKDREPILINSKDAKKL
                     GIKNGDVVRVFNKRGEVLAGAVVSDEIMQGVVRLCEGAWYDPNENGLCKCGNANVLTM
                     DIPTSKLANGNISHTGLVNIEKFKGELPKLTAFSAPKGAN"
     gene            complement(3532..4107)
                     /locus_tag="SB854_001323"
     CDS             complement(3532..4107)
                     /locus_tag="SB854_001323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c3 family protein"
                     /protein_id="HEG0957312.1"
                     /translation="MKKIFISFVVLATCLWAKNIAYTDEVVSLYLNKDDTKVIGRLLP
                     TNPFEVLKSENNKVLLKIDGYVNPKAPSVIYFNDSQRIIVAAFSKNTKLNFSQRVAGK
                     DGKWDKVSLEIWADKKEFAKDNKEMLNRAKELFVNNCGICHAIHKEKEFTANAWPAIF
                     RSMADRTGIDKKDRWLVIEYLQKNAKDFKTK"
     gene            complement(4588..5097)
                     /locus_tag="SB854_001324"
     CDS             complement(4588..5097)
                     /locus_tag="SB854_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HEG0957313.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIRKCYLILS
                     ILNQKQVGGEIFNDKNVRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPSFNNP
                     EFYHTLKCI"
     gene            complement(5097..5627)
                     /locus_tag="SB854_001325"
     CDS             complement(5097..5627)
                     /locus_tag="SB854_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HEG0957314.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKTAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQVQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(5640..6728)
                     /locus_tag="SB854_001326"
     CDS             complement(5640..6728)
                     /locus_tag="SB854_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEG0957315.1"
                     /translation="MPADLNDYFNKKNGNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            complement(6741..7655)
                     /gene="ilvE"
                     /locus_tag="SB854_001327"
     CDS             complement(6741..7655)
                     /gene="ilvE"
                     /locus_tag="SB854_001327"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HEG0957316.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKELENAQIELLKANNFKSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
BASE COUNT         2271 a         1303 c         1209 g         2876 t
ORIGIN      
        1 ttacataaaa aatcaaaaat ttttaattat tttgtatatt tttatcaagt attaactttt
       61 tataaatata aagagtttta aaatattatt tatttaagaa tattaatgca atttacattt
      121 gaacaaattt ttatcgcaat gctattgact ctttttgcag gtttttctac ggctataggt
      181 tctataatag cctttttttc cagaaaagat gatttaagag tgctttcttt ggggcttggt
      241 ttttcagctg gagtaatgat atacatttct ttcatggaaa ttttacctac tgcacttaaa
      301 gattttaaaa atcactatga ttcgcattgg gctgagcttt tgggattagc ttgttttttt
      361 ggtggaattt taatatcttt attgattgat aaattaatcc ccgaagatgt caatcctcac
      421 gagcctaaag aggatttaag cgagttaaaa atttgtccct tgccccaaaa aggacaaaat
      481 cctccgaaat ttcatcctgg agaaaagttg catcagatca atactaaagc tttaaaacgt
      541 acagggattt ttacagcttt ggctattgct atacataatt tcccagaagg ttttgctact
      601 tttatttcaa gtcttgataa tcttacttta ggaattgcta tagctatagc tgtggctata
      661 cacaatatcc cagaaggttt ggctgtgagt ttgccgattt atcatgctac aggagataag
      721 aaaaaagctt ttatttattc agctctttcg ggttttgcag agcctttggg tgcttttgtt
      781 ggagctttga ttttattgcc ttttataggc gatcttactt tggctataag ttttgctgtg
      841 gttgcaggaa ttatggtttt tatatctctt gatgagcttt tgcccgctgc aaaaacttat
      901 gataaggctc atgatagttt atatggactt atagtaggaa tggcaataat ggctttaagt
      961 ttaaatttgc ttgggcaata gaaagccttg cggctttctt aaatttagtt cgcacctttt
     1021 ggggcgctaa aggcagtaag ttttggtaat tcacctttaa atttttctat gtttacgagc
     1081 cctgtgtgag agatattgcc attggcaagt tttgaagttg gtatatccat ggttaaaaca
     1141 tttgcatttc cacatttgca aagtccgttt tcattaggat cataccaagc accttcgcaa
     1201 agtcttacaa ccccttgcat gatttcatca cttacaactg cccctgctaa aacttcaccg
     1261 cgtttattaa acacacgcac tacatcgcca ttttttatac caagtttttt tgcatcttta
     1321 gaattgatta aaattggctc tctatctttt attgcataag tatctcttaa gcttgtgtgg
     1381 caaagttgag agtgcaagcg atctcttggg tgatttgtaa gtaagtggaa aggtgcttct
     1441 ttgcttgcat ttccaagcca ttcaataggc tcaaaccaag tagggtgggc tttgcaatca
     1501 tcataattat aatttttaat cgtttctgag taaatttcaa tgagtcctga atctgtaccc
     1561 agagcattta agataggatc ttctataaat tctgaaaaac gagtccattc taaactttca
     1621 gctgttggtt caaaagtgat tggttcattt ttagcccaaa attcttcaaa acttggcata
     1681 ggagtagcaa aagcttcacc aaaactttga gtttgtttta gggcgctatt gtagtattct
     1741 ttgatgaaat ctttagcttt tttgccattt tctgtgtagg cattaaagac atcttttcca
     1801 taaattttgc aaatatcaga gaaaattaca taatcatctt tgctctcacc cacaggctca
     1861 acggcttgtt tcataggagc tatatgcata tttgaataat ctcctgtcat ggtaatatca
     1921 tctctttcgt aagatgaagt tacaggcatg ataatatctg ccattttagc tgttggagtc
     1981 cagtaaattt catttaccac aacggtgcgt ggttttctcc atgcttttac attagtgttg
     2041 gtatcttgat gatgcactaa aggatttcca cctacccagt agataaaatc aatatcagga
     2101 taagtgattt tagcaccatt atgatctatg gtttttccag gatgaagtaa agcatcagcg
     2161 attcttgcta cagggaaaga ataactcgct gcattttgaa gccattctgc accttcgctt
     2221 gaagcttctg ctttgcttaa gcctttaaat ttaccatttt tccaaattcc taagctacct
     2281 gctgtcatac caccgatcac tccgcctttg caagttggaa caccgccatt gctataatgg
     2341 tagcttagtc caaaaccacc tccttttgtg ccgatttgtc ctaacatcgc acaaagagta
     2401 actagcatcc agtgaggctg ttctccatga tgtgctcttt gcatacccca accactcata
     2461 atcatagtag gattatcata aaaagtttca gctaaatttt tgatagtttt ttcatcgata
     2521 ccacaaattt tacttgccca tttggtatct tttttaactc catcttcttt gccttctaaa
     2581 tagtctttaa atttatcaaa gccagtggtg taagtgtcta aaaactcgta attgactttt
     2641 ttcttagcga ttaaatggct tgccataccc atcattaaag ccacatcggt atttgggcgt
     2701 ggagctatcc atttggcatt taaaaatttc gctgtagtgg tttttacagg atctatacaa
     2761 atcactttga ttttactgtt tttaagtttt tcaaaatacg ccaaccctct ttgttcgttt
     2821 gaagtccaag ctatgcgtaa agtagaaagc ggatcagcac cccaaatcac aacatattta
     2881 gaatcgctta agatattttc ccatgaggtt tgttgctcat aaacttcaat cgatcctaca
     2941 acataaggca taatcacttg agaagctcct gtagaatagt cccctgtagc tcctacaaat
     3001 ccacctgtta catttaaaaa tctatgaagc aagatgcgtg agttttgcat atttccactt
     3061 gatttccagc cataacttcc accaaaaatt gcacttgcac ctttgctatc tcttgttttt
     3121 ttaagttctt tggcgataag tttgatcgct tcatcataac ttacgcgaac aaactcatct
     3181 ttaccacgaa gttcaggttt aggattgtca ggattttcaa ggtaggattt acgcacataa
     3241 gggtatttca cacgagattt ataaaccata tcagcagtgt agtgctgtaa aggattatcc
     3301 atttttgtaa ctttttccca aggttcgctt tttactattt tgccatcttt tatagtgagt
     3361 tttaaaatcc cccagtgtgc tgcggtgatc acttctccat tttttacaag tccgaggcta
     3421 acttttgaag cttctacggt ttttcctgca cttaagcttg gaatgagagg taaagcactt
     3481 aagcttgctc caatttttaa aaattttctt ctatctagca tgcttttctc cttattttgt
     3541 tttaaaatct tttgcgtttt tttgtaagta ttctataact agccatctgt cttttttatc
     3601 aatacctgtt ctatcagcca tagaacggaa aattgcaggc caagcgttag ctgtaaattc
     3661 tttttctttg tggatagcgt ggcaaattcc gcagttattt acaaaaagct ctttggcacg
     3721 atttagcatt tctttattgt ctttggcaaa ttctttttta tctgcccaaa tttcaaggct
     3781 tactttatcc cattttccat cttttccagc tactctttga gagaaattta attttgtgtt
     3841 tttggaaaaa gctgcaacaa taattctttg agagtcattg aaataaatca cagaaggtgc
     3901 tttaggattt acataaccat cgatttttag taaaacctta ttgttctcag actttaagac
     3961 ttcaaaagga tttgtaggta aaagtcttcc tataacttta gtatcatctt tgttaagata
     4021 aagcgataca acttcatcag tataggcaat attttttgcc cataaacatg tcgctaggac
     4081 aacaaaagaa atgaaaatct ttttcattac tattccttaa tataaatttg atgtaaatgt
     4141 attttaatac tatgcaattt aattattact taattgtata atttttacta agattactta
     4201 tttttagtgc tttaatatta ttctttattg atataataaa tttgagttaa ttatatttta
     4261 cttattgttt tttagaaaag ataaaacttc aattataaaa aaaagtttgt tttgagctca
     4321 gattaatact tctgagccca tttcgatctc gttgagtttt aaggtataag ctttttatag
     4381 ctttattttc cctcccattt ttaactctca tttagcaaag tgcttttaga tttaaaggtt
     4441 gattgactcc ttatcttgca tattaataaa tattatatta ataaaactta aattattatt
     4501 aatatttata taatttatag cggaattatt gttttgttgt gtgaataatt aatgtatttt
     4561 agaattttta ctagttgatt tcttgaatca aatacatttt aaggtgtgat aaaattcagg
     4621 attattaaaa cttggaggaa aaggaacact ggctctaaat tctttatagg tattacctgg
     4681 gagtgtgtct atgatttcta tagtataaga aacacttgta ttttgcattt tagcgttacg
     4741 gacattttta tcattgaaaa tttctcctcc tacttgtttt tggtttaata tactaagtat
     4801 caaatagcat tttctgattt caaatttagt aagattttga acttttccac ttactataac
     4861 gctttcatgt cttagatctc ttgtgtaggt tagtttgcta agatcggctt gagtggtgaa
     4921 ttgattgatt gtcagaaaaa tagaatatat caaaagtgcg gtaaaaatag tagctatggt
     4981 ataagaaatc aaagccattt ctttctgttt gacttttaga aagattaaaa tacaaatcaa
     5041 ggcaaagcaa ataagtaaaa tgataaaagc tataatatga aaaatcgtaa aatgcattaa
     5101 aaacactccg aaactaagcg tatggtatag ttattttcat agttaaaatt ttcaaaagca
     5161 attctttgaa cttgggttgc gtttttcttt agatctttaa tttctctact tttttgtcta
     5221 aaagggataa atttcttttt atattcttct atgatattat cattaggtat tttatctgca
     5281 aaaattttag ctgtaatttt acattcttta aaattatttt ttgaattatt tgtaatgtta
     5341 aaatcaacaa ttaaatcatt tgagctttgt atcatttttt gatctgtaat agcggttttt
     5401 cgagttctta cttcattgtc tattagttta tacccataga tataaactaa aaaacaaata
     5461 ataatgtcaa atgcgataat aaaaagtgcc gctataggcc tatggcgtaa aaatacacaa
     5521 agaagtaaaa cacaagtgaa gagaaaaaaa actaataaaa tcagcatata atctactaaa
     5581 tataaatgag tagtgtaaaa aagcacgatt tctcttagtt tctccacttg cgtatccttt
     5641 tagttcatgt tggcagcact ttgcttttta gcatctttgg tatcaaccca aatgtttggc
     5701 actgctccac ctggagttaa gaaaatttta gcatcttgat taacttttaa ggcttcatta
     5761 aattcttttt gagtttcaat ttgttttaaa tttagcaaag gggtgtttag gctgtttgcg
     5821 atttctttgt tagaataagc ttgtgcatct gcttctattt taacagccat agctttacct
     5881 ttggcgctga ttatggttgc atttgcttcc ccttcagcta aagcagcttt ttttaaggct
     5941 tcttgattag ctctttctac ttcatattta gttctttcag cctcttgttt tgcaatttgc
     6001 acgcgttcga tttgttcttt tacttttgaa ggtaaaataa tttctctaag ttgtacagcg
     6061 cgaagttcta caggttcgtt tggttgggct tctatggttt ttcttatacc ttcttctatt
     6121 tgagcggcta ttgtgttacg attagtagga agttcttcgg ctgtatattt tcctacaaca
     6181 cttcgcacta catcacgaac aactggatcg ataattttat tttcccaatt taagctccaa
     6241 gtagctatgg tttgaggaac ttgcaaagga tttaaacggt attgcactgt aacatcaata
     6301 gatacaggca atccacgaga atcaagtaca gaaatactat ttttattaat aacacctgaa
     6361 cctgaagata aattttcatt acttccctct atagaagcat agttgatttg tcttactcta
     6421 gtatcgatta tggttatttt ttgtacaaaa ggtaagaaaa agtgaagtcc tggttctaat
     6481 ggatttgggt catatttacc tgttgttgat ttaatcccca tttccccaga atttatcacc
     6541 ataaaaggtt ttgcaacgat taaaaataag ataataataa tcaccccata aacaaatgga
     6601 gagaatttcc caaaaccttt aaaattaaat tctggtgctt tgaaattgaa attttgacgg
     6661 ttgttgtttc cgttattgtt agaatttcca ttttttttat tgaaataatc attcaaatca
     6721 gctggcattt atttcctttt ttaaatataa gttagcatag atgcgtattt ttcattgcgt
     6781 ccataaacta catcaaaata agcatcttga agttttttag ttacagatcc tcttaaacca
     6841 tttcctatta ttcttgcatc gatattgtta ataggtgtga tttcagcggc tgttccggta
     6901 aaaaatgctt catcagcagt ataaacttca tctcttgaaa ttctttggcg aagcacagta
     6961 ataccaagat catgagcgat tttaagcact gtatcttgag taatgctttt taaagaaaaa
     7021 tcatttggag gtgtgattaa aaccccatct tttacaataa agaaacattc tcctgttcct
     7081 tctgcgataa aaccttcttc atcaagcatc aaagcttctt catagcctgc ttcaatagct
     7141 tcaaattttg caatttgaga gttaagataa ttcgcacttg ctttagcttt tcccatgcat
     7201 gatttaacac tatttcttgc aaaagacgaa atttttactt ttataccttt ttctaaacct
     7261 tcttctccaa ggtaagcacc ccattcccaa gctgcaatcc caactcttac aggagctttt
     7321 atatgataaa gtcccataac tccatcgcct aagaaaatca aagggcggat atagacattg
     7381 cttttaaaat tgtttgcttt taagagttca atttgtgcat tttcaagctc tttttgagaa
     7441 aaaggacaat ttaaaagagt aatttttgca gactctaaaa gtcttttggt gtgatcttca
     7501 agtctgaaaa ttgctaagcc tttatctgtt ttataggctc tagttccttc aaaaacagca
     7561 ttgccataat gcaaagaatg ggttaaaaag tgcaaagttg catctttaaa atcaactaat
     7621 tttccatcca tccaaatttt atctgctgag atcattttt
//
LOCUS       DARBBO010000075         7503 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.075, whole genome shotgun sequence.
ACCESSION   DARBBO010000075 DARBBO010000000
VERSION     DARBBO010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7503
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.075"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..947)
                     /locus_tag="SB854_001328"
     CDS             complement(<1..947)
                     /locus_tag="SB854_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HEG0957317.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNTLSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKKEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNYHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPYLKHLAFRAFDEVAMIKKELRSL
                     GAKTVVLNSGVPTTLSALKQNISYEKYEATKVNGKKLCHKDFLNYAIKLFHMEEKKAI
                     KEVGTMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVC"
     gene            1003..1776
                     /locus_tag="SB854_001329"
     CDS             1003..1776
                     /locus_tag="SB854_001329"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HEG0957318.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIVARHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPINLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLRQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELNQDKKTLQAQFEKELQNLELCAKKGLELGLKVAAGHGLNYKNVK
                     PVVKIKEICELNIGQSIVARSVFTGLQNAILEMKELIKR"
     gene            1773..2867
                     /gene="pdxA"
                     /locus_tag="SB854_001330"
     CDS             1773..2867
                     /gene="pdxA"
                     /locus_tag="SB854_001330"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HEG0957319.1"
                     /translation="MKKLAISIGDINGIGLEILVRSHEELSKICTPFYFIHESLLDKA
                     SKLLNLKLFNAKIVAFKDGKDYEFNFVKKENSLEIYSFYLPLGFKVDENFEIKAGEID
                     TKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGKGVYLP
                     YPLVADTAFTKTGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLHSKA"
     gene            complement(2857..3459)
                     /locus_tag="SB854_001331"
     CDS             complement(2857..3459)
                     /locus_tag="SB854_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957320.1"
                     /translation="MKKIILLLGLSLASLGALSFDELIYKDEVKPSFDCSKIKYDGKS
                     DDELMICNKIGVRNEFDNKKLALVDNIYSSLYQNISKKADKKMKKDFKAISKKMLKER
                     KICIKNMQNTKAGENPLLSLLNASDCMQEAYIKVLLELMQRAKKDTKTKEVLEQIFKN
                     KVDKYENLLTQSLNTNKDLQDFIDSLAKEDLIDSRAKFKL"
     gene            3572..4771
                     /locus_tag="SB854_001332"
     CDS             3572..4771
                     /locus_tag="SB854_001332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0957321.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     IAGTQHGVFFVIATLAVSAITPDDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTNLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKILVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSITKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLARLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSFTKV"
     gene            4827..5147
                     /gene="ciaC"
                     /locus_tag="SB854_001333"
     CDS             4827..5147
                     /gene="ciaC"
                     /locus_tag="SB854_001333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HEG0957322.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     DKKTNSSKFTNEDIDLGAVREDFRSYVWQKMREDQYKKNEETLLNKLFTTIDAGNATN
                     NTKA"
     gene            5331..6353
                     /locus_tag="SB854_001334"
     CDS             5331..6353
                     /locus_tag="SB854_001334"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEG0957323.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVIPLEMGMNLRFEKGEGPVFGNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVGKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            6350..7252
                     /locus_tag="SB854_001335"
     CDS             6350..7252
                     /locus_tag="SB854_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEG0957324.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIDKIISEVKVMLEKNVEFDFLTLTANGEPSLYPYLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFKALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKV"
     gene            complement(7249..>7503)
                     /locus_tag="SB854_001336"
     CDS             complement(7249..>7503)
                     /locus_tag="SB854_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957325.1"
                     /translation="SFSQLKQELSKETYRLILLDYELIKFDLEQMRNLLSAYKKQHPQ
                     SHIIFFSKEKVRDFDCVSEVLSDVSRNDLITLLRKYLPKA"
BASE COUNT         2669 a         1154 c         1109 g         2571 t
ORIGIN      
        1 aaacaaaccc cctctcttaa accctcatca atgactagaa gtttatgttt atcaaacaaa
       61 gcataaaaca gcaaacaacc tgcactcaaa taattttttc tcatcgtgcc tacttctttt
      121 atagcttttt tttcttccat atgaaaaagt ttaatagcat aatttaaaaa atccttatgg
      181 caaagttttt taccatttac tttagttgct tcatactttt catagcttat attttgtttt
      241 aatgcgctaa gtgtggtagg aactccggaa tttaaaacca ccgttttagc ccctaaagaa
      301 cgaagttcct ttttaatcat agccacctca tcaaaagccc taaaagctag atgctttaaa
      361 tagggatttg caattaaaaa atgaatttta agttttttat ctttaatatt tatgataaat
      421 ttaggatatt tttttattaa ttttttataa gaaatacaag atttataata agaatggtaa
      481 tttttttcat aaaaactaat aataccaaaa tcaaaacttt taaaactttt tccaaaagaa
      541 agctcacaag aagcccctcc taaatcacaa tacgcaaact ctccccaaat tttaagcctt
      601 cttaaacctg attgcatacc taaaacactg atcttagctt cacttttggc atctataagc
      661 ttaaaatcaa tcccaaattc tttttttaaa tgggcaaaaa tttcatttgt attgcttgcc
      721 tttctaaaag ctgcagtcgc tacagctctc gctttgctta aatcttgctc tttagctaaa
      781 atactcaaag tattttttaa tctttgtatg gcttctttag aaatttctcc actttgattt
      841 agatttttcg ctgccccaat aacaaattca tattctttta atttatttaa tttttcatcc
      901 atttgtactg ctcttaaagt atttgaacca agatctatac ctaacatgac tttccttatt
      961 tgattttata gtataatagc aaaaaagttc taaaggaaaa atatgctttt aggtgtaaat
     1021 atcgatcata ttgcagtgtt aagacaagct agaatggtaa atgatcctga tcttttagaa
     1081 gctgctttta tagtagctag acacggagat caaatcactt tgcatgtaag agaagatcgc
     1141 cgtcatgctc aggattttga cttggaaaat attataaaat tttgcaaaag ccctatcaat
     1201 ttagaatgtg ctttaaatga tgaaatttta aatttagctc ttaaactcaa acctcaccgc
     1261 gttactttag tgcctgaaaa aagagaagag cttactacag aaggggggct ttgtttaaat
     1321 catgctaaat taagacaaag catagaaaaa cttcaaaatg caaacattga agtttcactt
     1381 tttatcaatc ctagtttaga agatatagaa aaatcaaaaa ttttaaaagc ccaattcata
     1441 gagcttcata caggacatta tgcgaatttg cacaacgcac tttttagtaa tatctctcat
     1501 actgcttttg ccttaaaaga actcaatcaa gataaaaaaa ccttgcaagc tcaatttgaa
     1561 aaagaattac aaaatttaga actctgtgcc aaaaaaggcc tagaacttgg cttaaaagta
     1621 gccgcgggac atggtttaaa ttacaaaaat gtaaaacccg tagtaaaaat taaagaaatt
     1681 tgcgagctaa atataggaca aagcattgta gcaagatctg tatttacagg acttcaaaac
     1741 gctattttgg aaatgaaaga acttattaaa agatgaaaaa actagccatt agtataggcg
     1801 atataaacgg cataggactt gaaattttag tgcgttctca tgaagaacta agcaaaatct
     1861 gcacaccttt ttattttatc cacgaaagct tgcttgataa agcttcaaaa cttttaaatt
     1921 taaaactttt taatgcaaaa atcgtagctt ttaaagatgg aaaagactat gagtttaatt
     1981 ttgtaaaaaa agaaaattct cttgaaattt actctttcta ccttccttta ggctttaaag
     2041 tggatgaaaa ttttgaaatc aaagccggag aaatagatac aaaaagtgga ctttatggtt
     2101 ttttaagttt taaggcggca agttattttg tctatgaaaa acacgcccat gccttgctta
     2161 ctctacctat acacaaaaaa gcttgggaag atgcaggact taaatacaaa ggacacaccg
     2221 atgctttaag ggattttttt aaaaaaaatg ccattatgat gttaggttgc aaagaacttt
     2281 ttgtagggct ttttagcgaa catatacctt tagctaaggt gagtaaaaaa atcactttta
     2341 aaaatttaag tatcttttta aaagattttt acaaagaaac acattttaaa aaaatggggc
     2401 ttttaggttt taatcctcac gctggagatt atggagttat aggtggagaa gaagaaaaga
     2461 tcatggaaaa agctatagcc tttgttaatg cctttttaca ctctaaaaaa gatgaaaaat
     2521 ttttcaaaaa agccttaaaa gatgaaaatt tacaaaaaga attgctttta aattttaaag
     2581 gcaagggcgt ttatctaccc tatcctttag tggctgatac agcttttact aagactggtt
     2641 taaaaaactg caatcgttta gtggctatgt atcacgatct tgcccttgct cctttaaagg
     2701 ccttgtattt tgataaaagc atcaatgtaa gtttaaattt acctatcata cgcgttagcg
     2761 ttgatcatgg cacggccttt gataaggcct ataaaaatgc taaaatcaac actaaaagtt
     2821 attttgaagc ggctaaattt gcaatcaatt tacattctaa agcttaaatt tagccctaga
     2881 atcaatcaaa tcttctttag ctaagctgtc tataaaatct tgcaaatctt tattggtatt
     2941 taaactttga gtgagtaaat tttcatattt atcaacttta tttttaaaaa tttgctctaa
     3001 aacttcttta gtctttgtat ctttttttgc tctttgcata agttctaata aaaccttaat
     3061 ataagcttct tgcatgcaat cacttgcatt gagtaaagat aaaagaggat tttcccctgc
     3121 ttttgtattt tgcatatttt ttatacaaat ttttctttct ttaagcatct tttttgaaat
     3181 ggctttaaaa tcttttttca tctttttatc tgcttttttt gaaatatttt gatataaact
     3241 actatagatg ttatctacta aagcaagttt tttattatca aattcattac gcacaccaat
     3301 tttattgcat atcataagtt catcatcact tttgccatca tatttgattt tagagcaatc
     3361 aaaactaggt tttacttcat ctttataaat aagctcatca aaactcaaag cccctaaact
     3421 cgccaaactt aaaccaagca ataaaataat ttttttcatt atttaccttt aaaattttta
     3481 ttttatttta acaaaaatat tttgaatttt ttaaggaaat taagccttta ttttattata
     3541 atgcgttttt attttttata aggaacttaa aatgcaaaat tacaaaaaag ctctttttgc
     3601 actagctctt agtgcttttt gtatgggcgt aactgaattt gttatggcag gagttttggt
     3661 tgatgttgaa gcgtatttta gcgtagatgc aaaaaccgcg ggctatctta caaccttata
     3721 tgctataggt gttgttatag gtgctcctct tatcaccata cctttaagtc gttttcatag
     3781 acatacacaa cttttaatca atcttggaat ttttgcttta gcaaatttca tcatcttttt
     3841 tagccaaaat ttctatctta ctgcttttgc acgctttata gcaggaacac aacatggggt
     3901 attttttgtc attgccacct tagctgtaag tgctataact ccagatgata aaaaatcaag
     3961 tgctctagct ataatggtca cagggcttac tgtagcctta gttactggag tgccgcttgg
     4021 aacttttata gggcattatt ttggctttaa atttatcttt ttactcattt ttatcattac
     4081 aagtctagca ttttttggag tatggcatat gatgcccaaa aatttacatc ctagcccaac
     4141 caatcttaaa aatctaatcc ctgctttttc tcatcaaaat ttgttaaaaa cttatactat
     4201 aaccatttgt agttgtgggg ctcaatttgt tctttatact tatttgcaaa aaatacttgt
     4261 agaaataagc ggttttaaag tccaagatac agcttatatc ttgcttttat atggaatttg
     4321 tgcaatttgt gggaatttat ggggcggaaa aatagtagat aaaaaaggtg ctattttttc
     4381 tttgcgtctt attttaagca tacaagttct agtattttta agtgtatttc tcaccatgca
     4441 ttctaaaatt ttaatcattt ttagcgtagc tttgatagga ttttttgcct tttcaaccat
     4501 acctgcacta aaaatgctta gcattactaa agctaaacgc catacttata aagtcataga
     4561 cagtacagta agtgtgaatg aagcagcttt taatgtaggc atagctttag caagtttttt
     4621 aggtgggatt gttttagcaa gattgggtat agaatttaat gctttatttt cagcactttt
     4681 tgtaagccct gctttgattt ttgccttgct ttttgccaaa gataaattaa attataaaaa
     4741 atttcaaaga aaaagtttta caaaggtata aattggaata gaaattgctt gcttatttaa
     4801 tgtaaagtta aataaaggag gagaaaatgg tagtagataa tactcaaaaa acatcaaatg
     4861 ctatctttag caccacaact aaagttaaag aaaaaaatac ttcggcagat gaatttcaag
     4921 ccacattaaa tgaagtaaaa aacaaagaag aaaaggaaga taaaaaaaca aactcaagca
     4981 aatttactaa cgaagacatt gatcttggtg ctgttagaga agattttaga tcttatgttt
     5041 ggcaaaaaat gagagaagat caatacaaaa aaaatgagga gactttgcta aataagcttt
     5101 ttactacaat tgacgcagga aatgccacaa acaatacaaa ggcttaatat acaaatcaat
     5161 caaaactcaa actacataaa cgagaattcc aataattctc gtaaaatttc taataactct
     5221 ggataaaatg aaaaaattta ttatttcctc tatatgaaga aaatatagaa aaattgacca
     5281 atttaattta tcaaattctg ttataatttt gctaaaaaca aaggaaaata atgattttta
     5341 tcgatgcttg ctttaaaaaa cctacaccct acacccctat ttggatgatg cgtcaagcag
     5401 gaaggtattt gccagaatat atggaagtaa gaaaacaagc gggtgatttt ctctctttat
     5461 gcaaagacta taaaaaagct tctgaagttt ctttacagcc tattgatatt ttagatgtag
     5521 atgcagcaat cattttttca gatatcttag ttattcctct tgaaatgggt atgaatttac
     5581 gttttgaaaa aggagaaggg cctgtttttg gtaatcctat ttcaacccta gaagatttag
     5641 aaaaacttga cgatcaaaat gcacataaaa aattaaatta tgtctatgat gccttaaagc
     5701 ttacaagaga aaaattatct caaaacaagg ctttaatagg attttgcgga agcccttgga
     5761 ctatagctac ctatatgata gaaggaagtg gaagtaaaaa ttatgcaaag tgtaaaaaaa
     5821 tgctttatca aaacccagaa cttttacata aaattctaaa caaactaact caagttttaa
     5881 aactttattt agaagagcaa attaaagcag gtgctaatgc tatacaaatt tttgatagct
     5941 gggcaagtgc tttagaatat gataagtttt ttgaattctc ttttaattat atgcttgaaa
     6001 tttcaaattt tattaaaagc aaatacccaa atatacctgt aattttattc cctaaaggca
     6061 ttagcggtta tttggataga atcgatggta attttgatgt ttttggagtt gattggagca
     6121 ctccgcttga tttagcacgt gataaactat cgcacaaata cactcttcaa ggcaacatgg
     6181 aaccttgtag actttatgat aaaaatgcca tcaaagaagg agtcggaaaa atactaaaaa
     6241 ccatgcaaaa taaagctcat attttcaact taggacatgg gatcttgcct gatattcctg
     6301 ttgaaaatgc aaaatatttt atcaagcttg tacaagaaag ttcagctaaa tgaaaatact
     6361 ctttggtcct gttagctcaa ggcgttttgg aagatctttg ggtatagatt taagccctag
     6421 taaaaaacaa tgcaattttg attgtgttta ttgcgagctt gatccaaaaa aagcccaaga
     6481 aaaacaggat gaaattatca gcatagataa aattatctcc gaagttaaag ttatgcttga
     6541 aaaaaatgtt gaatttgatt ttcttaccct tactgccaac ggagagccta gtctttatcc
     6601 ttatttaaat gagcttattt tatctttacg cagcattgct aaagataaaa aattgcttat
     6661 tttaagcaat ggtacagctg tattagatga agacaaattt aatgctttgc taaaactaga
     6721 tgtggtcaaa tttagcctag atagtgcagt tgctaaaact ttttatcgta ttgatagagc
     6781 tttaaaaaac attgacttag aaaaaatgat agaaaaaatg gcagatttta gagctaggtt
     6841 taatggagat ttgattatgg aaattctagt tgttaaagat cttaatgaca acgaagaaga
     6901 atttaaagcg ctcaatcaag ctttaaaaaa aatcatgcct ttaagagttg atctaagcac
     6961 catagataga cctcctgctt atgctgttaa aaaagtaagc gaagaaaaac ttttagaact
     7021 ttctaaactt atagattcta ctcccgtact cttagccaaa agacattatg aaggtgaaaa
     7081 actaagcttc aatgaagaag aattattaaa aatgcttcat ttgcgctcac aaagcgaaat
     7141 agacattgaa gtgaaatttg atgaacaatc caaaactctc ttaaatcaac ttatcaaaga
     7201 aaaaaaggta aaaattctcg atttagctgg agttaaattt tataaagttt aggcctttgg
     7261 caaatacttt ctaagtaaag ttataagatc atttctactt acatcactta aaacttcgct
     7321 cacacaatca aaatccctaa ctttttcctt tgaaaaaaag atgatatggc tttgtggatg
     7381 ctgtttttta taagcactta gcaaatttct catttgctca agatcaaatt taattaattc
     7441 ataatcaagt aaaatcaaac gataagtctc cttgcttaat tcttgtttta attgactaaa
     7501 aga
//
LOCUS       DARBBO010000076         7372 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.076, whole genome shotgun sequence.
ACCESSION   DARBBO010000076 DARBBO010000000
VERSION     DARBBO010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7372
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.076"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            35..394
                     /locus_tag="SB854_001337"
     CDS             35..394
                     /locus_tag="SB854_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEG0957326.1"
                     /translation="MDIIFANQSLYYIPLKELKQNILEFYELLNTGGILFATMMSKKN
                     YYFSHSQKEEKNGLSKVEINGRLNETSFIHFIDKAQDLENLFQPFETLFLGDYDPINF
                     YNFEGSAHHYIYVGIKK"
     gene            434..1438
                     /gene="legI"
                     /locus_tag="SB854_001338"
     CDS             434..1438
                     /gene="legI"
                     /locus_tag="SB854_001338"
                     /EC_number="2.5.1.101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,N'-diacetyllegionaminate synthase"
                     /protein_id="HEG0957327.1"
                     /translation="MKKTLIIAEAGVNHNGDLNLAKKLIEIAADSGADFVKFQSFKAK
                     NCISTKAKKAPYQLKTTASDESQLQMVQKLELDLKAHKELILHAKKCNITFLSTPFDL
                     ESVDLLNELGLKIFKIPSGEITNLPYLKKIAKLNKKIILSTGMANLGEIEEALNVLCK
                     NGAKRQNITLLHCTTEYPAPFNEVNLKAMQSLKDAFKLDVGYSDHTRGIHISLAAVAL
                     GACVIEKHFTLDKNMSGPDHKASLEPQELKMLCTQIRQIQKAMGDGIKKASKSEQKNI
                     NIVRKSLVAKKDIKKGEIFSEGNLTTKRPANGISAIRYEEFLGKIATKNYKEDELIRE
                     "
     gene            1431..2585
                     /gene="legG"
                     /locus_tag="SB854_001339"
     CDS             1431..2585
                     /gene="legG"
                     /locus_tag="SB854_001339"
                     /EC_number="3.2.1.184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-N,N'-diacetylbacillosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEG0957328.1"
                     /translation="MSKRKICIVSATRAEWYLLRNLCHEIQNDKDLSLQIIATGAHLS
                     PEFGLTYKEIEKEFKITKKIPILLANDDKISLCKSMSLAFSAFSDAFEDLKPDMVVIL
                     GDRYEMLSVASVCLLMHIPLVHLCGGELTLGAIDDSIRHSISKMSHLHFVSHEIYKKR
                     LLQLGEEEKRVFNIGSLASTIIKNMNFLNKKDLEKALEMKLDKELYLITYHPLTLNVK
                     NTQKEIKTLLKKLDTLKNASLIFTKANADENGLLINEILQNYCQKNSHKAKLFDNLGS
                     QKYLSLMKIAKAMIGNSSSGISESPFFKTPCINIGDRQKGRLRTQNIIDSEINDLDQA
                     FEKLESKEFKQNLKNFKNPYDNGKNPNKIIKTCLKNVNLDTILHKNFIDL"
     gene            2594..3619
                     /locus_tag="SB854_001340"
     CDS             2594..3619
                     /locus_tag="SB854_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEG0957329.1"
                     /translation="MDINKLKLTPDSSIKEALKIVGQERVRLGIIVDKKDKFLGVISD
                     SNIRKALISGKTLKDSIKDIYTKNPITIKENTSKEQLLKISAKTDIYDFPVLDEKGQI
                     LSIKSISSLLKANPNSIIIMAGGLGSRLKELTKDTPKPMLKVGKKPILESIIQRLKNQ
                     NFENFIFCVNYKKQIIEDYFQKGQKFGVKISYIKERKKLGTAGALSLIKQEFKESFIV
                     MNADILTELDFNALLKAHKKSKALMSVCVREFEQQIPYGVITQKQGFIENIEEKPTQK
                     FLVSAGIYVLENEILNLIAKNEYLDMPELIKLVLQKGKVNTYIINDYWIDIGRPDEFL
                     KANEDFK"
     gene            3616..4521
                     /gene="ptmF"
                     /locus_tag="SB854_001341"
     CDS             3616..4521
                     /gene="ptmF"
                     /locus_tag="SB854_001341"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-glutamine-D-fructose-6-phosphate isomerase
                     subunit"
                     /protein_id="HEG0957330.1"
                     /translation="MKVLIIGFGSIGKKHFLALKNLNHEVSLLSLSAKKEEFKNTPIY
                     RSLKECDLNEFDLFIIANITTEHFNTLKTLDELVKDKTILVEKPLFEKSQNFTSSKNH
                     IYVAYLQRFNPVIVALKRLLKGEKIYFASLVCNSYLPHWRALDYRQNYSAKKELGGGV
                     LLDLSHEIDLAFFLFKDLELIYSQNAKISELDITSDDFAFLALKNSQEAKIHIELDYF
                     AKFNKREIIIHTLEKSFKADLINNKIEIYHKNQSQKILNFENDTIKTLQNLHHAVFEK
                     DKELCDLKQALKVLELCDEVRKKNG"
     gene            4514..5221
                     /gene="legF"
                     /locus_tag="SB854_001342"
                     /gene_synonym="ptmB"
     CDS             4514..5221
                     /gene="legF"
                     /locus_tag="SB854_001342"
                     /gene_synonym="ptmB"
                     /EC_number="2.7.7.82"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CMP-N,N'-diacetyllegionaminic acid synthase"
                     /protein_id="HEG0957331.1"
                     /translation="MAEILCTICARGGSKGVKNKNIRKINKLEMIAYSIIQAQNSKLF
                     KHIVISTDSDEIASVAQKYGAEVFFKREAHLANDRTAKLPVMRDALLRSEEHFKTCFE
                     TLIDLDASAPLRSSLDIKKAYESFVENDNSNLITAVPARRNPYFNLVEIQNNKVVKSK
                     EGNFTTRQSAPKCYDMNASIYIFKRDYLLENDSVFGKNTGLFVMDESTAFDIDSELDF
                     KIVEFLISLKNLSPKDF"
     gene            5221..5991
                     /gene="ptmA"
                     /locus_tag="SB854_001343"
     CDS             5221..5991
                     /gene="ptmA"
                     /locus_tag="SB854_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PtmA"
                     /protein_id="HEG0957332.1"
                     /translation="MLENKIIFVAGACGRIGKALCEKILLSKGIPILADINKECLNKL
                     QENLETNFKTKLLSLELDITKQESLQTALQKSQERYGKIDAFVNSSYPFGKDWGKTPY
                     YELKYEQICESLNLHLAGFMLAAQEFVKFFKQQGYGNIINLSSIMGVYAPKFENYEGT
                     SMQSSLEYSVIKAGINHMSSWLAKELFNQNIRVNTLASGGILDNQNELFLKAYRKCCA
                     SKGMLDADDICGTLVFLLSDESKFITGQTLVVDDGWGL"
     gene            5979..>7372
                     /gene="pseD"
                     /locus_tag="SB854_001344"
     CDS             5979..>7372
                     /gene="pseD"
                     /locus_tag="SB854_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin modification protein PseD"
                     /protein_id="HEG0957333.1"
                     /translation="MGLMMTFTPTQKELFNKNIEALSNLFLKESLKEIKSSKFELILG
                     KDNLDINLKDTSDNTFLYENVIDELNSMLNTYNDKYLLYPVLYFYGFGNGILFKALLQ
                     NKNHQHIVVFEKDIEIIWIMFHILDFSHELQSARLMILQTSSLDIELFSNFCSSKPFF
                     QFSRIYFLELMSHYYERFHEDVLELNKKLVQDFKDSILSHGNDPLDALQGIEQFVYNL
                     PQMITHPSYKELLSKRKDISDTAIIVSTGPSLTKQLPLLKKYASKATIFCADSSYPIL
                     AKHNIKPDYVLSLERIPLTSEFFNNDFGEFDKDILFVLKSYVHPHTTKYLQKNNRNFM
                     LVSTYASFINYLKLDDFGYFNMGFSVANMNFLLAIHLKHKNIVLIGQDLAYAKDGLSH
                     TKDYSNLDKHEGHFQRDKNKYTTQAYGDNGKVESSFVWTLFRHNFEQDVANAKKNYYI
                     TTYNCTEGGARIEGT"
BASE COUNT         2817 a         1093 c         1170 g         2292 t
ORIGIN      
        1 aaattctagc atcaaaggac tttttgatga aaatatggat attatctttg caaatcaaag
       61 tctttactac atacctctaa aagaacttaa acaaaatatt ttagaatttt acgaactttt
      121 gaacacaggt ggaatacttt ttgctacaat gatgagcaag aaaaattatt atttttccca
      181 cagtcaaaaa gaagaaaaaa atggcttgag taaagttgaa attaatggaa gattaaatga
      241 aacaagcttt atacatttta ttgataaagc ccaagatcta gaaaatcttt ttcaaccttt
      301 tgaaacttta tttttaggag attatgatcc tattaatttt tataattttg aaggatcagc
      361 acaccattac atttatgtag gtattaaaaa ataaaatttt gcctttattt taaggcaaaa
      421 taaaggcaaa actatgaaaa aaactcttat catcgcagaa gcaggagtta atcacaatgg
      481 tgatttaaat ttagctaaaa agttaataga aatcgcagca gattcagggg ctgattttgt
      541 taaatttcaa agttttaaag ccaaaaactg tatcagcaca aaggctaaaa aagcacccta
      601 tcagcttaaa accacggcta gtgatgagag tcagcttcaa atggtacaaa aactcgaact
      661 cgatcttaaa gctcataaag agcttatctt acacgcaaaa aaatgcaata ttacctttct
      721 ttctactcct tttgatcttg aaagtgtaga tcttttaaat gagttaggct taaaaatctt
      781 taaaattcca agcggagaaa tcaccaatct accctatctt aaaaaaattg caaagcttaa
      841 taaaaaaatc atactttcaa caggcatggc aaatttaggc gagatagaag aagctttaaa
      901 tgtgctttgc aaaaatggcg ctaaacgcca aaatatcact cttttacact gcactacaga
      961 ataccctgcc ccttttaatg aagtcaatct taaagccatg caaagcttaa aagacgcttt
     1021 taagcttgat gtgggttatt ctgatcacac aaggggtata cacatttccc tagctgcggt
     1081 tgccttggga gcttgtgtga tagaaaagca ttttactcta gacaaaaata tgtcagggcc
     1141 tgatcataaa gcaagcctag aacctcaaga actaaaaatg ctttgtaccc aaataagaca
     1201 aatacaaaag gcaatgggtg atggcataaa aaaagcaagc aaaagcgaac aaaaaaatat
     1261 caacatagta agaaaaagtt tagtggccaa aaaagacatc aaaaaaggag aaatttttag
     1321 cgaaggaaat cttactacca aacgccccgc aaatggtata agtgctataa gatatgaaga
     1381 gtttttgggt aagattgcta ctaaaaacta caaagaagat gagcttatcc gtgagtaaaa
     1441 gaaaaatttg tatagtcagt gcaacaaggg ctgaatggta tcttttaaga aatttatgtc
     1501 atgaaattca aaacgataaa gatctaagcc ttcaaatcat cgctacagga gcacatttaa
     1561 gccctgagtt tggactcact tataaagaaa tagaaaaaga atttaaaata actaaaaaaa
     1621 tccctatcct gcttgcaaac gatgataaaa taagcctttg taaaagtatg agtttagctt
     1681 ttagtgcttt tagcgatgct tttgaagact taaaacctga tatggtggtg attttaggcg
     1741 atcgttatga aatgcttagc gtagcaagtg tatgtctatt gatgcacata cctttagtgc
     1801 atttatgtgg cggggagctt actttagggg ctattgatga tagtataaga cacagcattt
     1861 caaaaatgtc acatttacat tttgtaagtc atgaaattta taaaaaaagg cttttgcaac
     1921 ttggagaaga agaaaaaagg gtttttaata taggttcttt agcttctact atcataaaaa
     1981 atatgaattt tttaaacaaa aaagatttag aaaaagcctt agaaatgaaa ctagataaag
     2041 aactttactt aatcacttat catcctttaa ctttaaatgt aaaaaatact caaaaagaga
     2101 ttaaaacctt acttaaaaaa cttgacaccc ttaaaaatgc aagtttgatt tttaccaaag
     2161 caaatgccga tgaaaatgga cttttaatca atgaaatttt gcaaaattac tgccaaaaaa
     2221 actcacacaa ggctaaactt tttgataatc ttggctcaca aaaataccta agtcttatga
     2281 aaatagccaa ggccatgata ggcaattctt caagtggtat tagtgaaagt ccttttttta
     2341 aaactccttg cattaatata ggcgatagac aaaaagggcg tttaagaact caaaatatca
     2401 ttgattccga aatcaacgat cttgatcaag cttttgaaaa attagaaagc aaagaattta
     2461 aacaaaattt aaaaaatttt aaaaaccctt atgataatgg taaaaatcct aataaaatca
     2521 taaaaacttg cctaaaaaat gtaaatttag atacaatttt acataaaaat ttcatcgatt
     2581 tataaggctt agtgtggata taaacaaact caaactcacc cctgattcta gcataaaaga
     2641 agctttaaaa atagtcgggc aagaacgcgt tagattaggc attatagttg ataaaaagga
     2701 taaattttta ggagtcatta gcgattcaaa catcagaaaa gctttaatta gtggcaaaac
     2761 tttaaaagat agtatcaaag atatttacac taaaaatccc atcaccataa aagaaaacac
     2821 aagcaaagaa cagcttttaa aaatttctgc taaaaccgat atttacgact ttcctgtttt
     2881 agatgaaaaa gggcaaattc tttctataaa atctatctca tcacttttaa aagccaatcc
     2941 aaactccatt atcatcatgg ctggaggctt aggctctcgc ttaaaagagc tgactaaaga
     3001 tactccaaaa cctatgttaa aagtaggcaa aaaacccatt ttagaaagca taatccaaag
     3061 acttaaaaat caaaattttg aaaattttat cttttgtgtg aattataaaa aacaaatcat
     3121 agaagattat tttcaaaaag ggcaaaaatt tggggttaaa atttcttata ttaaagagcg
     3181 taaaaaacta ggtacagcag gggctttaag ccttataaaa caagaattta aagaaagttt
     3241 tatcgttatg aatgcagaca ttttaaccga gctggatttt aatgctcttt taaaagcgca
     3301 taaaaaatca aaagctttaa tgagcgtttg cgtgcgtgag tttgagcaac aaattcctta
     3361 tggagtgatc actcaaaaac aaggttttat agaaaatata gaagaaaaac ctacccaaaa
     3421 attcctagta agtgcgggga tttatgtact tgaaaatgaa attttaaatt taattgctaa
     3481 aaatgaatac ttagacatgc ccgaactcat caaacttgta ttgcaaaaag gcaaggtaaa
     3541 tacctatatc atcaacgatt attggattga cattggaagg ccagatgagt ttttaaaagc
     3601 caatgaggat tttaaatgaa agtcttaatc ataggctttg gaagcatagg aaaaaagcat
     3661 tttttagcct taaaaaattt aaatcatgaa gtaagtttgc tttctttaag tgctaaaaaa
     3721 gaagaattta aaaacactcc aatttatcgc tctttgaaag aatgtgattt aaacgaattt
     3781 gatcttttta tcatcgcaaa tatcactacg gagcatttta acaccttaaa aactttagat
     3841 gagcttgtaa aagataaaac catactcgta gaaaaacctt tatttgaaaa aagccaaaat
     3901 ttcacaagct caaaaaatca catttatgta gcatatttac aacgttttaa tcctgtgatt
     3961 gtcgctttaa aaaggctttt aaaaggtgaa aaaatttatt ttgctagttt ggtttgtaat
     4021 tcttatttgc cccattggag agctttagac tacaggcaaa attacagcgc taaaaaagag
     4081 ctaggtggtg gggttttact cgatctctct catgaaatcg atctagcctt ttttcttttt
     4141 aaagacttag agcttatata ctcccaaaat gctaaaattt cagagcttga cataacaagc
     4201 gatgattttg cctttttggc tttaaaaaat tcacaagaag ctaaaattca tatagaacta
     4261 gactattttg ctaaatttaa caaaagagaa attatcatcc atactttaga aaaaagcttt
     4321 aaagccgatt tgataaacaa taaaatcgaa atttatcaca aaaatcaaag tcaaaaaatc
     4381 ttaaattttg aaaatgatac gataaaaacc cttcaaaatt tacatcatgc agtctttgaa
     4441 aaagacaaag aactttgcga tcttaagcag gctttaaaag tgcttgaact ttgtgatgaa
     4501 gtaaggaaaa aaaatggctg aaattttatg tactatttgt gctaggggtg gtagcaaagg
     4561 cgttaaaaac aaaaatatta gaaagattaa caaacttgaa atgatagctt atagcatcat
     4621 acaagctcaa aattcaaagc tttttaaaca catagtcata agtactgata gtgatgaaat
     4681 cgcaagtgta gcccaaaaat atggcgctga agtttttttc aaaagagaag ctcatcttgc
     4741 caatgatcgg actgcaaaac ttcctgtcat gcgtgatgcc ttgctaagaa gtgaagagca
     4801 ttttaaaacg tgttttgaaa ctctcataga cttagatgct tcagccccgc ttcgctcaag
     4861 ccttgatata aaaaaagctt atgaaagttt tgttgaaaat gataattcca atctcatcac
     4921 cgcagttcct gctagacgca atccttattt taacctcgta gaaatacaaa ataacaaggt
     4981 agtaaaatcc aaagaaggaa attttaccac tcgccaaagt gccccaaaat gctatgatat
     5041 gaacgctagt atttatatct ttaaaaggga ttatctttta gaaaatgata gtgtttttgg
     5101 caaaaacaca gggctttttg taatggatga aagcacagct tttgatattg atagcgagct
     5161 tgattttaaa atcgtagagt ttttaatctc tttaaaaaat ttatcgccaa aggattttta
     5221 atgcttgaaa ataaaatcat ctttgtagca ggagcttgtg ggcgtatagg taaagcgctt
     5281 tgcgaaaaaa tacttcttag caaaggtatc cctatactcg cagatatcaa caaagaatgc
     5341 ttaaataaat tgcaagaaaa tttagaaaca aattttaaaa caaaactttt aagcttagaa
     5401 cttgatatca ctaaacaaga aagcttacaa accgcccttc aaaaaagtca agaaagatac
     5461 ggcaaaatcg atgcttttgt taactcaagc tatccttttg gcaaagattg gggtaaaacg
     5521 ccttattatg aactcaaata cgaacaaatt tgcgaaagtt taaatttaca tttagcaggc
     5581 tttatgctag ccgctcaaga atttgtgaaa ttttttaaac aacaaggcta tggtaatatc
     5641 atcaatctta gctccatcat gggagtttat gcgccaaaat ttgaaaacta tgaaggcact
     5701 tccatgcaaa gctctttaga atacagtgtg ataaaagcag ggattaatca catgagctct
     5761 tggctagcta aagagctttt taatcaaaac atacgcgtta atactctagc aagcggagga
     5821 attttggata atcaaaatga acttttttta aaagcttata gaaaatgttg tgcgagtaaa
     5881 ggtatgctag atgcagatga tatatgtgga actttggtat ttttacttag cgatgagagt
     5941 aaatttatca cagggcaaac tttagtggta gatgatggat ggggcttatg atgaccttca
     6001 cccctactca aaaagaactc tttaataaaa acattgaagc tttaagtaat ctttttttaa
     6061 aagaaagttt aaaagaaatt aaatcaagta aatttgaact tatcttaggt aaagataatc
     6121 tagatatcaa tttaaaagat acaagtgata atacttttct ttatgaaaat gttattgatg
     6181 aattaaactc tatgctaaat acttataatg ataaatatct actttatcct gtattgtatt
     6241 tttatggttt tggaaatgga attttattta aagctttatt gcaaaataaa aatcatcaac
     6301 atattgttgt ttttgaaaaa gatatagaaa tcatttggat aatgtttcat atcttagatt
     6361 tttcacatga attacaaagt gcaagattga tgattttgca aacaagttct ttggatatag
     6421 aattgttttc taatttttgc tctagcaaac ctttctttca attttctaga atttattttt
     6481 tagaactgat gagtcattat tatgaaagat ttcatgagga tgttttggag ttaaataaaa
     6541 agctagtgca agattttaaa gattccattc tttcccatgg caatgatcct cttgatgctc
     6601 ttcaaggtat agagcaattt gtttataact tacctcaaat gatcactcat cctagttata
     6661 aagaattact ttctaaaaga aaggatataa gtgatacagc tatcattgtt tctacaggac
     6721 catctcttac taaacaattg cctttattaa aaaagtatgc tagtaaagct acgatttttt
     6781 gtgcggattc ttcttatcct attttagcta agcataatat taagcccgat tatgtgcttt
     6841 ctttggaaag gattccttta acttctgaat tttttaacaa tgattttggg gaatttgata
     6901 aggatatttt gtttgttcta aaatcctatg tccaccctca tactacaaaa tatcttcaaa
     6961 aaaataatag aaattttatg cttgtatcta catatgcaag ttttataaat tatttaaaac
     7021 ttgatgattt tgggtatttt aatatgggat ttagtgtagc taatatgaat tttttacttg
     7081 ctatacattt aaagcataaa aatatcgttt taataggaca agatttagct tatgctaaag
     7141 atggactttc tcacactaaa gattatagca atcttgataa acatgaagga cattttcaaa
     7201 gagataaaaa caaatatacc actcaagctt acggagacaa tggaaaagtt gaaagttctt
     7261 ttgtttggac tctttttaga cataattttg aacaagatgt ggccaatgca aaaaaaaatt
     7321 attatattac cacctacaac tgtaccgaag gtggagcaag gatagaagga ac
//
LOCUS       DARBBO010000077         7279 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.077, whole genome shotgun sequence.
ACCESSION   DARBBO010000077 DARBBO010000000
VERSION     DARBBO010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7279
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.077"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..1392)
                     /locus_tag="SB854_001345"
     CDS             complement(<1..1392)
                     /locus_tag="SB854_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEG0957334.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLIKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGLKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPVKLTPCENGIFVPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLE"
     gene            complement(1389..2312)
                     /gene="hemC"
                     /locus_tag="SB854_001346"
     CDS             complement(1389..2312)
                     /gene="hemC"
                     /locus_tag="SB854_001346"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEG0957335.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLEIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(2309..2698)
                     /locus_tag="SB854_001347"
     CDS             complement(2309..2698)
                     /locus_tag="SB854_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family protein"
                     /protein_id="HEG0957336.1"
                     /translation="MNYKLSLSPLFVLEIIASVLFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLIFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(2695..4404)
                     /locus_tag="SB854_001348"
     CDS             complement(2695..4404)
                     /locus_tag="SB854_001348"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEG0957337.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEVKAQNTCSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYRDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVIGKGLENNEIELIQREGLVKELIKTDELMEILKK
                     KVL"
     gene            complement(4388..5686)
                     /locus_tag="SB854_001349"
     CDS             complement(4388..5686)
                     /locus_tag="SB854_001349"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEG0957338.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKGEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIVTNSLIEELSYKRYFFDIAVPR
                     DIDINENDNISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(5686..6579)
                     /locus_tag="SB854_001350"
     CDS             complement(5686..6579)
                     /locus_tag="SB854_001350"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HEG0957339.1"
                     /translation="MQKIDELIKQFLQELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(6593..7129)
                     /locus_tag="SB854_001351"
     CDS             complement(6593..7129)
                     /locus_tag="SB854_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HEG0957340.1"
                     /translation="MFKISPCLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(7132..>7279)
                     /locus_tag="SB854_001352"
     CDS             complement(7132..>7279)
                     /locus_tag="SB854_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HEG0957341.1"
                     /translation="IAMVELLEKQGLTEMDVKNFILENGDFIEERQNDIYIELGAKIL
                     GHEG"
BASE COUNT         2445 a         1417 c          800 g         2617 t
ORIGIN      
        1 ttctagtaat ttttcatctt ctaaaatttc aagctcttca acttgtattt cttcacaagc
       61 atcaagtcct gctttacccc caaaacaaga attaggtgaa gcatgatcta attgatcaca
      121 aattccttct gaaattaaaa ttttctttgt attaaaacga tctaacatat aaggaattaa
      181 agcatcataa tctttcaaag aaggtgcatt tttatccaca aaaattgcat gcttaacaaa
      241 actcatttgc cctactcccc aaaatgcatg cataatttgt tgcgcatgag cgggatattt
      301 tgcatcgatt tttgctaaga taagattatg aaagacccca ttttcaggca tattataatc
      361 aattaaatca ggtactgaag tttgaagcaa gggtaaaaaa attctttcag taccaagccc
      421 catgatctta tcttctaaag gaggctttcc tacaaccgtt gcttgataga tcgcatcttt
      481 tttagcataa attttttcta ctttcatcac aggaaaaagt tcagcaggag tgtaaaaacc
      541 cgtatgatct ccaaaaggac cttcgatttt aaactcttct aaatccacat aaccttcaat
      601 aactacatca ctatcataag gcacaaaaat accattttca caaggagtaa gttttacagg
      661 agttttttta ataaaaccat aaagtaaaag ttcaaaaatt cccttaggta aaggtgcttg
      721 agaacaccaa atataaagcg gatctccacc tatggctata cttacaggca ttttttttaa
      781 accagcattt ttgtattcgt gataaaaatt tgccccatct ttatgaattt gccaatgcat
      841 taaaagttca tttttatcac tcatttgcaa acgatacatt ccaagattat tttgagtttt
      901 atctaaattt tgtgtataaa cttgccccat ggtaataaat ttacccgcat catcttccca
      961 agtttttagt atgggaagtt cttcaagtga gtttaaaatt tcataatcat acaaggcttt
     1021 attttttttc agtcttttag gaggaatatt tttaaaactt aacaaattca taaaaaaatc
     1081 catttttgct ttaaaactcg taggaatatg aagcttgatg agttttgaaa tttcttcagc
     1141 cacctcttca taatcacgtc caaaagctaa atttaaagcc ttttcattgc aaaaagtatt
     1201 catcaaaaca ggaaatttat attgtttatt taatttttta tctataggat ttttaaataa
     1261 taaagccttc cctttttctc cttttttagc ttctatatag gctaaatgag cgatttcaag
     1321 atctacatct acaggttctt caattaccct taaaagatca ttttctttta aaatttgaat
     1381 aaattctttc atatcatact ctcagctttt tttaaaagtt ctttagcacc tttagcaata
     1441 aactccttag ccaaactctc tccaaaacct ttaaaatcat tctttttaat cattctctta
     1501 tcttttaaaa tttcacttcc atcgggtagt ccaagtaccg cacgcacaca aatttcatct
     1561 cctaagagtt ctgcgttaat acctatagga acttgacaac ctccttctaa agtagcaata
     1621 aattctcttt caatgcttgt ttcaatcaaa gcattttcat catttaaaca ttttaaaagt
     1681 tctaaaattt tttcatcatt tatgctttct atacctaaag ctccttgaga agccgcagga
     1741 ataagctcat ctttgctaaa ttcataaaca aaattcactt gcttatctaa gtttaagcgt
     1801 ttaattcccg ccattgccaa aataatcgca tcaaaatcat tattttttaa tttctctata
     1861 cgagaattga cattaccacg caaagaaata atctctaaat caggtcttaa taataaaagc
     1921 tgcatcttgc gtctaagact agtagtgcct atttttgcac cttttggtaa agaaagaaaa
     1981 tctttataat tttgacttag catagcatca ttgctttgct ctcttttgct taccgctgcc
     2041 aaaactaaac cttgaggaaa aaaactaggc acatctttta aactatgcac tgctaaatgt
     2101 gcttcttttc ttaacatact ttcttcaagt tcttttgtaa aaagtccttt accaccaatt
     2161 tttgccaaag gagaatcaag caaaacatcg ccttttgttt taaaaccttc taaaagcact
     2221 tcaatttgat gtgtattttt taaaatttgg gctacatgtt cactttgcca aagagctaat
     2281 tgactttttc ttgttgcaat aataagcttc attttctatc ctctataatt tcaacatcaa
     2341 taatttcttc attagaattt tgatactctt gcttggtgta ttgatatttt gatttagtta
     2401 ttaatttcaa agcaatacca aagaaaaata caaaaattcc aaaaacactt gtaataatcc
     2461 ctggaaaaat aagcaaaaac cctgcgataa caaaagaaaa ttgtgttaac atatccttta
     2521 agccacccat ttgaaattca agcatatttt tccaaaaaat tcccaataaa accgcaccaa
     2581 aaatcatact caaaagtatg aaaaataaaa aattaccaaa accaaaaaaa actataaaaa
     2641 gtacacttgc aataatttca agtacaaata aagggcttaa acttaattta taattcataa
     2701 cactttcttt ttaagaattt ccataagttc atcagttttt ataagttctt ttaccaaacc
     2761 ttctctttgg ataagctcta tttcattatt ttctaatcct ttaccaataa ctaacgcata
     2821 aggaaagccc ataagttcaa aatcattcat tttaacccca aaacgctcat ttctatcatc
     2881 aagcaatact tctaatccaa gattagttaa atccctataa agcttattag caaattctaa
     2941 agccttttca tctttgagat ttgaaacaat aatttcaagc acaaaaggag ctaaagtttt
     3001 attccaaata catccttttt catcatgatt tgcttcaata gctacagcca acaagcgtga
     3061 aacacctatg ccgtaacatc ccatataaaa aggctggctt ttgccatttt catctaagaa
     3121 atttgcattc atcgctttgg aatatttttg tcctagctta aaaatatgcc ctacttctat
     3181 acctttactt tgttttaatt ttgctccaca tttaacacag caatcccctt ctttaacttc
     3241 aatcaaatct ttaaaacgat ctttatttaa atttacaaca tcaataccga ttaaatgata
     3301 atctttttca ttcgcaccca taatcatttg cttttcgttt tcaagctcaa aatctatata
     3361 aaaatctata tcttttaatc ccacaaaacc tataaaacca gctactaagc cagctttttc
     3421 caattcttct tcgctcgcat cgactagttc aagggcactg caagtatttt gagccttaac
     3481 ctcttgcaaa tcatcacttc ctcttataaa aaacacaact aatttgcttt cattttcata
     3541 aatagctttt tttaccactg ctttaatcgt ataaaaagca ttgattttaa aaaattgtgc
     3601 taaagaatct atagttttaa tatttggagt gtgaaattta cttgcataat ttgcttcagg
     3661 acgctcatct tgacaagttt ttttagctct ttttgcagct tcaacattag ccgcataatc
     3721 acaattttca caaattaaaa tatcatcttc cccatttttt gctaaaacca taaattcctt
     3781 agagccactt ccaccaatag ccccactatc agcttcaact gctctaaaat caagccccat
     3841 tctttgtaaa atttgagaat aagttttata cataagctca aactcacgcc ctaaatcttc
     3901 ttcattagca tgaaaactat atccatcttt cattagaaat tcacgacatc ttaaaagccc
     3961 aaatctaggc cttgcttcat cacgaaattt aagtccaatt tgatataaat gcaaaggaag
     4021 ttgtttatag cttgtgattt tgttttttac caaagaaagc atagcttctt catgtgttgg
     4081 acctaaaaca aattcatttt cttttctgtc tttaaaacgc aaaagttctt ttccaaaaac
     4141 attgtaacgc ccactttctt gccacaaact tgcaggagtg ataaaactaa gatttacttc
     4201 ttgtgctcca gccttatcca tttcttcttt aactatattt ttaatcttgt ctaaaactct
     4261 ttttcccaaa ggcaagaaat tataaagtcc gctaccaatt tgttctacaa aacccgcacg
     4321 cgttaaaaaa atatgactag gtaaactcgc atcttttggc gcttctttta aacttggtgc
     4381 ataaaattta gtaaatctca tcattattct ccatatcaaa ttcacattta tattgattca
     4441 aaccttcaag attattttgc aaatcaaaaa cataacgcat agcattaatc actgtatcgc
     4501 tttgcatttt accttgtaaa tgtttcaaat ttacagtagg cgtgtgtaaa aaagccttaa
     4561 aaacttgatg aatcaacttt ctagcctctt ctttatcaga ttttttcaaa tatccttttt
     4621 ttaacgcaat ttcaagttgt ttatctgcat attctttagc ttgcaagcgt atagctttga
     4681 taataggcat caaagccaaa tcgtttaaat acctaaaaaa ttcacttgtt tcacgaccta
     4741 ttatcccata agccatacga gcttcttgtt ctcttagtgc taaatttttt tgaaccacaa
     4801 tttcaagatc atctacagca aaaacagata tattatcatt ttcattgata tcaatatccc
     4861 ttggaactgc aatatcaaaa aaataccttt tataagaaag ttcttctatt aaagaatttg
     4921 taacaatagc atttggtgca ttggtagctg agaaaaaaaa ctcgtattga tttaaatatt
     4981 tttttaaatt ttctaaacta tcatattcgc ttaaaacacc aagtctctca cacaaatctt
     5041 tagctttttg taaatcacga tttaaaataa tcaccttagc acccgcagca attaaatgtt
     5101 ttgccgcaag ttctcccatc tctccagctc caataacaac agcttttttt tgcgttaaat
     5161 ctgcaagttc ttttgctttt gccacggcaa cgctagctac agaaatagaa tttttagaaa
     5221 tttgagtttc attgcgtacc ttagcagcac atttaaaagc actatgtact gctcttgaaa
     5281 ggtgtactcc acaaaaatta ttttttacag caaaagcaaa ggcatctttt aattgtcctg
     5341 ctatctgagt ttctccaacc accaaactat ccaaagaact tgctacagaa aaaagatggt
     5401 ggattgctcc actatcttca aaaatatcag ctttttcaag taaaatatct ttatcaacat
     5461 cacaaagtaa agccaaagat ttaacaataa actccgcaca ggccattttt acaaaagcaa
     5521 caatttcaac acgattgcaa gtgcttataa ccaaacattc ttcaatattt tcatgagtgc
     5581 taatgatttt taaaaactca ccttttttag cttcattgga aaagcttaac ttttccctta
     5641 aggcaatatc tgtattttta tgagtaaaag atatacaata atacattaaa attccctatc
     5701 tatcatagct ttaataatat cattaagctt gttattatca tatttttcaa ttgcttttct
     5761 agcctttttt gcataagttt tagcttctaa aatagctttt tctaaagctt tttgttcttc
     5821 aaatttagtt tttagccatt ctttttcatt ttcatttaaa tcttttttaa ataaagtctg
     5881 caaatatatc ctatcttgtt cttgtaaatt ttcataaaga taaatataag gcaaggtagt
     5941 tttaccctct ttaaaatcat tcatagcagg ttttccaaga attttttcat cactcttaat
     6001 atctaaaata tcatcaatca tctgaaaagc aagtcctaaa tttttaccat attctgcaaa
     6061 atctttttca tataatccag ccaaaatagc tccgcatcta gcacttgctt caatcaaaac
     6121 agctgtttta ttatagatca ttttcaaata agcttcttta ttgatattaa atttctctcc
     6181 caaatcaaca tccataagtt cgcctatagc aagctttaca acagcatctg aaataatact
     6241 tgcaaatcta gcatccattt tgcttaattc ataaaaggct tttgaataca aaatatcgcc
     6301 caacataaga gcattttttg taccaaattc agcattaaca gatcttgctc cacgccttaa
     6361 ttcactctca tcgataatat catcatgtaa taaactagca agatgtatca attctatagc
     6421 cgcacaaatt ttaaaagcaa tctcactctc atctgcgata gctaataata atttagagcg
     6481 taatttcttt cctgatttta catttgaaag catatttaaa ataggttcat agccaagctc
     6541 ttgtaaaaac tgttttatta attcatctat tttttgcact atcttttcct tgttaattgc
     6601 tattattatt ttctttgctt gttaatggtt ttacctgagg ttcgttaaaa ttaatcatag
     6661 gaacaacctg attattttgc ggtggatttt gtaaagcttt ttttctcgga tctaaaaatt
     6721 ctaccattaa gcgagattcc ttatcttcta tataaaccgt aaaagttgcc aaacctttat
     6781 tataaccact aaattctaaa ataagtcttg ctctatcaat atgtggatta gtatagtcag
     6841 gtattaaagt ttgagttacc caatctaaat ttcttcttaa actcatcaca aattgacgcg
     6901 gatatttgcg aaatttcgaa tgtacgatga tattagtatt atcaaacaaa gtccaataaa
     6961 aatcaaaatt ttgcacctta tcttcatagc ctatttcttt aatctgcaca ctagctctct
     7021 catctttttt aagtataaat ttataagtat aatcaaaagt tggttcagat gctaaaacat
     7081 tactaaaaat aaaaaaaata caaattaaac aagggcttat tttaaacaat tttagccttc
     7141 gtgtcctaaa atttttgcgc ccaattctat ataaatatca ttttgccttt cttctataaa
     7201 atcaccattt tctaatatga aattttttac atccatttct gttaaacctt gtttttccaa
     7261 aagttccacc atggcaata
//
LOCUS       DARBBO010000078         7204 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.078, whole genome shotgun sequence.
ACCESSION   DARBBO010000078 DARBBO010000000
VERSION     DARBBO010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7204)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7204)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7204
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.078"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            222..935
                     /locus_tag="SB854_001353"
     CDS             222..935
                     /locus_tag="SB854_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HEG0957342.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
     gene            910..1101
                     /locus_tag="SB854_001354"
     CDS             910..1101
                     /locus_tag="SB854_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HEG0957343.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWENYYIKAE"
     gene            1101..1643
                     /locus_tag="SB854_001355"
     CDS             1101..1643
                     /locus_tag="SB854_001355"
                     /inference="COORDINATES: protein motif:HMM:NF016750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-dependent oxidoreductase"
                     /protein_id="HEG0957344.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAY
                     YIRKFAAFFGTNNVDHQARI"
     gene            1692..3905
                     /locus_tag="SB854_001356"
     CDS             1692..3905
                     /locus_tag="SB854_001356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002896872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HEG0957345.1"
                     /translation="MTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIV
                     VDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREE
                     AAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQ
                     MVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYE
                     WLLGNFVSKDWMHKTGLSLARWWVAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQ
                     QVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQW
                     RFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRS
                     IGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTD
                     IEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQE
                     KEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDL
                     VQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYL
                     TRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHF
                     TGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK"
     gene            3902..4543
                     /locus_tag="SB854_001357"
     CDS             3902..4543
                     /locus_tag="SB854_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEG0957346.1"
                     /translation="MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            4540..5472
                     /locus_tag="SB854_001358"
     CDS             4540..5472
                     /locus_tag="SB854_001358"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HEG0957347.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRML
                     PASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            5639..6424
                     /gene="fdhD"
                     /locus_tag="SB854_001359"
     CDS             5639..6424
                     /gene="fdhD"
                     /locus_tag="SB854_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEG0957348.1"
                     /translation="MDPLFTTQILKYKGDESFTCNDTLVREIKLEIFINDEKKVGALM
                     ATPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVV
                     ISGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKL
                     FVDEKTFFIGEDIAQHNTIDKALGKACLAGVDLSQCFLMVSGRLSSEMVAKAVMHKIP
                     VLVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            6417..7154
                     /locus_tag="SB854_001360"
     CDS             6417..7154
                     /locus_tag="SB854_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEG0957349.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNINIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKTYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRAMELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
BASE COUNT         2517 a          884 c         1485 g         2318 t
ORIGIN      
        1 ttcaaatata aaatcaactc aaatatctaa ttttcaatac tttggtatga ttttttaata
       61 ttttaaatcc ttgtggaatt ttattgaaat tcagtgattt ttaaatcaaa tagtattaag
      121 ataaatcgat ttaaaaatcg gctttaaaat gaatattagg tatattttgc ataatattca
      181 ttcaagcaaa atttaaagct atttttgaaa attttgaatg catgggagct ttaatggatt
      241 tggaaaaatt aagattagct agaagtcttt attatcaatg tctaggagag ctttttgttt
      301 tttcattttc tgaagaaaga ttgtcaaaat tacaagagta tttaaagaca atgcaagaat
      361 gtttatttga tgaaaattta aaatcaaatt ttgatatctt gcttaagcat ttagatgatg
      421 aaaattctat acaagcattt tttaaagaat atgatttgct ttttttaagt cttaaaaata
      481 gcattccaac gactttttct tacatagaag aaggttttga aaattcaaat cctttacttt
      541 gcgtgcgtca aattttagtc aaaagtaaaa taagacgcaa tgaaaaattt tttaaagaaa
      601 gtgaagatag tgttggattt tgtttattgt tgatgagtga atttttaagg caaaatgaag
      661 atgatttagc caaagagctt tttgaaaaag tgatcaataa aagcattgat gagtttttag
      721 gcgatgtttt catgaataaa aatgcgaatt tatataagga aattgcaagt attgcatcgg
      781 cttttatgga atttgaaaga ctttgctttg aagtggaaaa acctgcaaaa ataaattcta
      841 aaaaagtgca aaacgatcta tcgcgttcag aatttttaag aagagaagca aataaacaaa
      901 ggaggactcg tgaaaaatcg cagggaattt cttaaaaaat ccgcttttgc cttaggggct
      961 gctggagtgc ttggtagcac aactttagct ctagctaaag atgaagaaag aaaagattta
     1021 gttaaaggta aaagtaagaa aaaagaagtg ctttttcaaa gaagtgctaa ttgggaaaat
     1081 tattatataa aggctgagta atgtcaagtg taggtgaaaa tatcaagctt acgcgtcgtt
     1141 cttttcttaa aatggcagca ctttcaagcc tagcaacacc gttgcttgct agaagtgaaa
     1201 ctttaagaga agcgagtgct gatgagctta aagaagctta tgaaggtagt aaaaaagtaa
     1261 aaacagtttg tacagcctgt tctgtaggct gtgggattat tgcagaagtg caaaatggtg
     1321 tttgggtgcg tcaagaaatc gctcaagatc atcctgtgag ttcaggtgga cattgctgca
     1381 agggatctga tatgatcgat atggtgcgtt cacatgtgcg tttaaaatat cctatgaaaa
     1441 aagaaaatgg agaatggaaa cgcataagtt atgagcaagc tttaagtgag atcggagaaa
     1501 aactagctgc ttatcgtaaa gaaaatcctg aaagtgttat gtttttaggt tctgcaaaac
     1561 ttaataatga acaagcttat tatataagaa aatttgcagc attttttgga acgaacaatg
     1621 tagatcatca agctagaatt tgacacagcg caacagtcgc cggtgtggcg aatacatttg
     1681 gttatggcgc tatgacaaac catcttggag acatccaaag aagtaaatgt atcattatca
     1741 ttggagcaaa tccagcggta aatcaccctg tgggttttag acatttctta aaagcaaaag
     1801 aaaaaggtgc aaagcttatc gttgtagatc ctagatttac aaaaagtgca gcaaaagcgg
     1861 atatttatgc aagaattcgt ccaggaactg acattgcttt catgtatgga atgttaaaaa
     1921 tcatttttga tgaaggcttg gaagatacaa aatatcttga tgaaagagtt tttggaattg
     1981 ataaaattcg tgaagaagca gcaaaatgga cagttgaaga agtggaaaat gttacaggga
     2041 tctctaaaga acttttggtg caaatcactc acgaagtagc taaaaacaaa ccaactacgc
     2101 ttatttgggc tatgggttta actcaacata ctgtaggaac ttcaaataca cgtttagcac
     2161 ctattgtgca aatggtactt ggaaatatag gtaaatttgg tggtggagtt aatatcttac
     2221 gcggacacga taatgttcaa ggtgcttcag atatggcttg tttgagcgaa aatttaccag
     2281 gttattatcc tttaaatgaa gcgacttgga gatactatgc caaaatttgg ggtgtggatt
     2341 atgagtggct tttaggaaat tttgtaagca aagattggat gcataaaact gggctttcac
     2401 ttgctagatg gtgggtagcg gctttaaatg gaaaagatgg aaatgatgct atcgataatg
     2461 caggaacgcc tttaaaagct ttagtagtta tgggaaatgg tattacttcg actgcacaac
     2521 aagtaaaagt taaagaaggt ttggaagctt tagagctttt agttttagcc gatccttttg
     2581 taaatgaagc agggattatt gcagaaagaa aagatggaat ttatctttta cctgcagcaa
     2641 cacagtttga aacaagcgga agtgtaacag caacaaatcg tagcggacaa tggagattta
     2701 aagttgtaga tccactttat gaaagcatgg aagatcaaga aattttattt gagcttgcta
     2761 aaaaattagg tttttatgaa gactttacca agactttacg cgatgaaaaa ggtgagattg
     2821 tttggcctga aaatgcaaca agagaaattg caaaagcagt tagaagtata gggcttaatg
     2881 gttggagtcc tgaaaggctt aaaaagcata ctttatactg ggataaattt gatgaggtaa
     2941 ctttagaagg aaaagacgaa gttgctggcg agtattacgg gcttccttgg ccttgttgga
     3001 gtgataagca cccaggttct cctgtgcttt ataataccga cattgaagta gcaaaaggtg
     3061 gtatgggctt tagaaacaat tttggacttg aatatgaagg agagagttta cttgctaaga
     3121 atgcaccttt aaattcacct attgatacag gttatccaca aattactaaa gataatatag
     3181 aaaaagtttt aggtattact ttaagtgctc aagaaaaaga aaaaatggga tcaacttggt
     3241 cttatgatga tagcaatatc atagcaacta aatgtataga aaaaggcata gttccttatg
     3301 gaaatgctaa agctagagct gtagtttgga cttttaaaga taaaattcca ctccaccgtg
     3361 agcctttaca ttctccaaga aacgatttgg tgcaaaaata tccaagtttt gaagatcaaa
     3421 aagcgcttta ccgcgtggat actaaatttg tttctgtgca acaagctaag gattattcta
     3481 aagaattccc gcttaatctt gttactgcaa gacttgtgaa tttaaatggt gcaggtatgg
     3541 aaaatagagc atctatgtat ctaacgcgtt taacacctga aatgttttgt gagatcaatc
     3601 ctgaattagc aaaagagcaa gacattaaag caggagatat gatttgggtg cattctccag
     3661 aaggtactaa aattcatgta agagtgaagg ttaatccagg tgtagcaaaa gatatgattt
     3721 tcttgccttt ccattttaca ggagttatgc aaggcgtgga tttaacgcac aatttcccag
     3781 aaggaactaa gccttatgca agcggagaaa gtgctaatac ggtaacaaat tatggttatg
     3841 atatcatgtg tcagattcca gagactaaag gtggactttg tagaatcagt aaggatggaa
     3901 aatgagtaag gtaaattttg caaatttaga aaaagaacgc ttgaaattct tttgtgataa
     3961 tgagcgttgt attgattgta atggttgcgc ggtagcttgt gatgaagcac atgagcttcc
     4021 tattcatatt cgccgccgcc gtgtgattac tttaaatgaa ggaattcaag gaaaagaagt
     4081 ttcaacttct atttcttgta tgcattgtga tgatgctcct tgttctatcg tttgtcctgt
     4141 ggattgtttt tacatccgtg ctgatggtat tgttttgcat gataaagaaa tttgcatagg
     4201 ttgtggatat tgtctttatg cttgtccttt tggtgcacca caatttccaa aagatagtgt
     4261 ttttggaaat aaaggcatta tggataaatg tactatgtgt gcaggtggcc ctgaagcaac
     4321 gaattcagaa aaagaaagag aactttatgg tcaaaatcgt atcgcagaag gaaaagtccc
     4381 tgtatgtgct gcgatgtgtt cgacaaaagc acttttagta ggtgaaagtt ctaaaataga
     4441 agagatttat cataatagac ttatgaatag aaattatggc attccaaatc cttcggaaag
     4501 tttggaatgg aagattgctt acacaggaaa ggaacgctta tgagaaaagt atttgtaacg
     4561 cttttattaa gcgtagtgag tttatttgct tatggtagcg agagaatggg acaagatact
     4621 caaatttggg attttcatcg tattacaaat atcccaaatt atgatacttt tggcaaactt
     4681 tggacaactt tgcaaggtga atatatagct actatagctt taatcgctgt tattgcggta
     4741 ttgtctgcat ttgctttgca ttatatggtt ataggaccta agcaattttc acacgatgga
     4801 aagaaaattt atgcttttac attatttgaa agactttttc attttatcgc agcgatttct
     4861 tgggtgattt tagtgccaac tggttttgtg atgatgtttg gagaagtttt tgggggtgga
     4921 gtttttgtaa gggtttgtaa aaatttacac gcttttgcaa cgattttgtt tatcatctct
     4981 ataatcccta tgtttttatg ctggattaaa agaatgcttc ctgcaagtta tgatatcaga
     5041 tggatgatga tagtaggtgg ttatttaagt aaaatcaaac gtcctgtacc tgcaggtaag
     5101 tttaattttg gtcaaaaatc ttggtattat atagctgtat ttggtggatt tttgatgata
     5161 attacaggtg gatttatgta ttttcttgat tttaattcca cggcaattca aggtcttttt
     5221 ggtttaactc aaattgaact tttgagaatt tcagctatag tgcataattt cttgggtata
     5281 gtgtgtgcag tgttttttgg tgtgcatatt tatatggcag tatttgcaat caaaggtagt
     5341 atccattcta tgattagtgg ttataaagaa gaagaagagg tttatatttt acattcttat
     5401 tggtataaag aattaagcaa taaaaagcaa attgaaccta gtttttctta tgatcctaat
     5461 gtgaaaattt aatctttaac cgctatgtta ttacatagcg gtagttttaa gcttttttga
     5521 aataaataga acgaattttc ttttataagt tgaatctaaa atctattttt ccatatataa
     5581 atttgttatt tatgtttttt tgatataata ttatttaaag atatttaaag gataaggtat
     5641 ggatccgtta tttacaactc aaattttaaa atataaaggt gatgaatctt ttacatgcaa
     5701 tgatacttta gtgcgtgaaa ttaagcttga aatttttatt aatgatgaaa aaaaagtagg
     5761 tgctttaatg gcaactcctg tagatgaaca ggcattagca ataggatatt taatgagtga
     5821 aaatatcatt gcgaaagtaa gcgatattga gagcatagaa acaaaagatg atggtatgag
     5881 tgtgcatatt aaagcaaaga ttgataaaga aaatttagca aagcttaatg ctgaaggtgt
     5941 agttataagt ggttgcggta gagcacatac tgccaatatc gatccagaag ctattgaagc
     6001 gagtaaaatt agttctgatg caaaatttag caaagatgaa attttaaaac aaatgagtac
     6061 tttttatact caatgcgagc tttacgagaa aacaggctgt gtacatacgg ctaagctttt
     6121 tgtagatgag aaaacttttt ttataggtga agatatagct cagcataata ccatagataa
     6181 agctttagga aaagcgtgtt tagctggggt tgatttaagt caatgttttt taatggttag
     6241 tggaaggcta agttctgaaa tggtagctaa agcagttatg cataaaattc cagtgcttgt
     6301 ttcacgcacg gctcctactt gtttaggggt tatgatagca agaaaatttg atttaacgct
     6361 ttgtggtttt gctagagaaa ataagatcaa tatttatagt ggagaattta gaattcatgg
     6421 ataaaaatca agaaaaagaa atcatctcat atatgagaga attgttaaat agcaatgaaa
     6481 aattagattg tggtacggct tttaaaattg caaagaaatt taatataaat atagaaaaaa
     6541 tcggacaatt agccgatgaa aatcacatga gaattgataa ttgcgagttg gggcaatttg
     6601 gacatttaga ttttgaaaaa gcaaagattg aagtgcttaa aaaaatagaa cctagtttag
     6661 atgaaaagcg tagaattttt tgtaaagatg caagagatat tgctaaagaa ggttgtggac
     6721 ttaaaagtat gcgttcagct ttaaaaactt ataaggttga tgtaaagtat tgtcaacttg
     6781 gttgttttaa agaaaaaaaa ggtaagcaat ttatagtaag aacaaaaact tggattgaaa
     6841 atgcggatgg agatttgctt tttggtcgag gaaaaacaga acttttagaa cttatcggac
     6901 aaacaggtag tttattacat gcttctaaac ttatggggat taattataaa aaagcttgga
     6961 tgcatttaca aaccttacaa aaaaattctc aagaaatttt agttagcaca agacaaggac
     7021 gctctaaaga atcaggaaca aaacttactc ctagagctat ggaattgatg gaaaattact
     7081 ctattttgca aaaagacata gaagaatacg ctaataaacg ctttaaagaa ttgtttttaa
     7141 aaggaaaaaa ataaatcttc tatcaaaaaa tactaataca taattttttt ataattaatt
     7201 aata
//
LOCUS       DARBBO010000079         7080 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.079, whole genome shotgun sequence.
ACCESSION   DARBBO010000079 DARBBO010000000
VERSION     DARBBO010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7080
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.079"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            130..851
                     /locus_tag="SB854_001361"
                     /pseudo
     CDS             130..851
                     /locus_tag="SB854_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            781..2709
                     /locus_tag="SB854_001362"
     CDS             781..2709
                     /locus_tag="SB854_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957350.1"
                     /translation="MGVENIYTLPLNGAPYISRSVAFDGEAKDNKLILESNTKIDLHN
                     SQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLDKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNF
                     YGKNYYNLYGGFATEGANFNIIDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINAKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIIINNTVFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDTQDVKSEVVNNFENFTFILPNKIKNPILTIEKLINLPSNGSMEILTKNK
                     PTKGKYILIQSDVGIYDGDNRLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNV
                     NFSFEVSDDAKIIYINIL"
     gene            2721..4802
                     /locus_tag="SB854_001363"
     CDS             2721..4802
                     /locus_tag="SB854_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HEG0957351.1"
                     /translation="MKKMSKHIVLSFAVSSLLFSQAYALPQGGKFTHGSTGSISSSNG
                     TMNVIGNNKNSVIQWGGGFNIGQNETVKFNGNQQNYLNIAYQKDASKIDGKLDGGTNN
                     IFLVNSMGVLIGKTGTITAGKFVASTTPLKDSDVQNFISQGMNFSPVFDVSKQGNIIN
                     LGKINADNIVLIGNKVEINKGKITLDVLKLEGNKVYVDAGVVKDTKNIVAKAEQEAII
                     QQSITSFEENGALLGNSSSKFSFDDSSKVKNWTKYGSIADATEWNKFADFWNVNKEKF
                     RTAFDHFRLIDDIDFSGVKTYIVGDNTSNAFAKSFDGSGYALKNVNINSSNQYVGIFG
                     VVQNSYIRNLNIQGLKIASTGYDAYVGGIVGQNIANSYTGFENVTVHDLVINTAVNTK
                     VGGIIGWGNGSGGNNTINFTNVAINNISIVAKEGSYVGGIGRQIDGGNFNNVVVNDIE
                     KLITSGNDSKTGGFTGKVGNLKINNAYLFYKNGAILSAGNYKTQAGKVIGDPGISVNN
                     NFSNIYVYHNLENGYIDEGQNFFKSVQYNNEVTGKKDFDSAVRKKFNDIKYLDNNSYA
                     FADSFTKVTDAVKLSKDDFDPKLLQRILDDLMNGKYTYDFDTKTWTYADSKGVVGENE
                     ASEITQSLNFLNAFKDTGVEQEFLKLWQGSQEQSYKNYANLYEKWTQKKTAMDKIKTG
                     EGYFASFKEEL"
     gene            4899..5156
                     /locus_tag="SB854_001364"
     CDS             4899..5156
                     /locus_tag="SB854_001364"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957352.1"
                     /translation="MHEKLLEQKEALEKQFADLSGNEGFHYKLENEILNSQGFAINGS
                     DVDGKVYTGKYNFEGKLASLPEKSNISIYEPDKQKKRERGG"
     gene            5116..5361
                     /locus_tag="SB854_001365"
     CDS             5116..5361
                     /locus_tag="SB854_001365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957353.1"
                     /translation="MSQINKKRGRGGGEDPDKPSVLPPEIPEKVVEAPIKIQTKVDTK
                     KEDDDQVDIGEVDARSSGLRCIVSDNFKTMNICVNAK"
     gene            5371..7059
                     /locus_tag="SB854_001366"
                     /pseudo
     CDS             5371..7059
                     /locus_tag="SB854_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893445.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
BASE COUNT         2734 a          835 c         1259 g         2252 t
ORIGIN      
        1 cattaaattt aaatattgaa aaataaaata tcaaattaat attttataat caactcagga
       61 catacgggat agtgttgcaa ataatcaatt tgcgataaat caaaaggttt tattttagtg
      121 agaaatgaga tgaaaaaata ttttaatatt tttaaaattt ttacaaataa gacaaatgca
      181 aaatttagct tgggcgtttg tagtgtggtt ttatcttctt cggtttgttt tgcggcggtt
      241 caggctacaa gtaaggatgg aaaaattttt tatatttctg aacattcttt taaggataat
      301 caagtttatg atcctcaagc agaaattttt aaaaaaatta atggaaaaaa tttctatgct
      361 tctaagtcaa aatactctat atcaaattta actatgattt ataataaccc taaatctgga
      421 aataaaaatt tatccaagct tgaaatttta actccggata cttcaaaaga agagatcata
      481 acagctttta gcactttagg aaccgtatct tcagatactc aagccgttcc tagttctttt
      541 atacctttta ttgtaacagc ttatgctcaa aatacaaatg caacaaatag taaacttata
      601 ttagaaaatg gagaattatc ttctgtgtat ttttgcaaac caagcatagg ggattgtgga
      661 gtacctaata attctcaaaa aggcgatcgt tttaagtatt taattactgc ggcgtttact
      721 gacaggcggg ggggggattt aacaatcaaa ccattttaaa agaaaactcc tatatcaata
      781 atgggtgtag aaaatatcta caccttgccc ttaaatggag ctccttatat ttcaagatct
      841 gtagcttttg atggtgaagc taaagacaat aaattaatct tagagtcaaa tacaaaaatt
      901 gaccttcata attcccagta tttttcagat gaagaaggta aggatattta tgatgaaaga
      961 attactcgtt taatgggagc ttttggcata aattctaatt tacaaaacaa taaagttctt
     1021 atcgattcag ccaatatcgt ccttcatggg ccagatggtg agtatacagc tcgttcgacc
     1081 tttgaaattt taggtgcttt agctgatgta aataatctta aaaaatacaa tgtaagtaaa
     1141 aattccgtaa taattaaaaa tttaaattta gatttaatgg taaattcgca aaataaaata
     1201 actttttatg atgctgtttt atttggagaa atttacggtg gaagaacatt acagggtaat
     1261 gcagagaaaa attctataga agtttatcat tttaactcat tagatcatct tgataaaaac
     1321 attaaaacac atgcatcgtt aaacctctat ggtgggtatt ctaacgatgg tgaagctaat
     1381 ggaaataaaa ttgtatttcg tcttaaaaaa cctttaaaaa tcagtgataa tttttatgga
     1441 aaaaattatt acaatcttta cggaggtttt gctacggagg gtgcgaattt taatattatt
     1501 gatatacaaa atgatttaac ctatgaaaaa gttccacaaa attattctga taaatttact
     1561 gtatatgcag ctagaacttt aagtggaaaa gcaaataata ataccttaag tataaaagat
     1621 tctgttattt cattgccttt atatgctttt attacaagtg aaactacgct agatggtata
     1681 gactatatcg ctgatgaatc aaacaataat gaagtaaatt ttgaaaatat taaatcatct
     1741 aaaaatttaa gtttgatgat caatgctaaa aatgtttcaa ataataaaat aaattataat
     1801 ctcattcaga gtttaaccga agcgagttct ttaggaaagg gctcaaaaat tattttaaaa
     1861 gcaactcaaa atgcaaacaa caatcttata aagcttaaag attgttcttc ggctgccgtg
     1921 gaaagttcgt gcatcataaa agcagataaa gaaagtgctt ttaataaaat catcatcaac
     1981 aacacagttt ttagtactgc ctcagataaa agacaaggtt atgtggggtt gatagctgga
     2041 gtgtctgcaa attctcatga taatatcatg gagcttgtta atttaaatat agatgagtat
     2101 aaaaatcaag atgctatatt tttagctcca tctggaactt cggatatttc aaattttaaa
     2161 tcttataaca atactttata tttaggtgga gagttaaatt tctttaaaga tgtaaatatc
     2221 gatttgcttt ctggttctgt ttttcatgaa gtaaataaaa aaggcaaaat aatcactcaa
     2281 attctaccgc atcaagaaga tttttctaaa aataatcgtt tgattataga tactcaagat
     2341 gtcaaatcag aagtggtaaa taactttgaa aattttactt ttattttacc aaataaaata
     2401 aaaaatccta tcttgactat agaaaaactt ataaatcttc cttcaaatgg aagtatggaa
     2461 attcttacta aaaataaacc aacaaaagga aaatatattc tcatacaaag tgatgttgga
     2521 atttatgatg gtgacaatag attgttaaat caacaagaat tagaaaattt gttagaaaaa
     2581 atgaaaaata ataaaaataa atttaattac aacaagatag aaaagttggc taaaagtaca
     2641 ttgaaaaatg taaattttag ctttgaagtt tcagatgatg caaaaataat ttatatcaac
     2701 atactttaaa ggagagtaac atgaaaaaga tgagtaaaca tatagtttta tcatttgcgg
     2761 tgagttcttt gctcttttct caagcttatg ctttgccaca aggaggtaaa ttcactcatg
     2821 gttcaacagg aagtataagt tcaagcaatg gcacgatgaa tgtcatagga aacaataaaa
     2881 actctgttat tcaatggggt ggtggtttta atataggaca aaatgaaact gtaaaattta
     2941 acggaaatca acaaaactac ctaaacattg cttatcaaaa agatgcttct aagatagatg
     3001 gaaaactaga tggcggcacc aataacatct ttttagttaa ttccatggga gttttgattg
     3061 gcaaaacagg aactatcact gcgggaaaat ttgtagctag cacaacacct ttaaaagatt
     3121 cagatgtcca aaattttatt tctcaaggga tgaatttttc tccagtattt gatgtaagta
     3181 agcaaggaaa tattataaat cttggaaaga tcaatgcaga taatattgtt ttaataggaa
     3241 ataaggttga aatcaataaa ggaaaaatta ctttggatgt attaaaactt gaaggtaata
     3301 aagtttatgt tgatgctgga gtggtaaaag atacaaaaaa tatcgtagcc aaagcagagc
     3361 aagaagctat cattcaacaa agcataacaa gttttgaaga aaatggagct ttattgggta
     3421 attctagtag taaatttagt tttgatgata gtagtaaagt taaaaactgg actaaatatg
     3481 gaagtattgc ggatgcaaca gaatggaata aatttgctga tttttggaat gtaaataaag
     3541 aaaaatttag aacagctttt gatcattttc gtttgattga tgatattgat tttagtggcg
     3601 tgaaaacata catagtaggt gataatacaa gcaatgcttt tgctaaatct ttcgatggtt
     3661 ctggttatgc tttaaaaaat gttaatatta attcatcaaa tcaatatgta ggaatttttg
     3721 gagttgttca aaatagctat ataagaaacc ttaatattca aggattgaaa attgcttcaa
     3781 ctggttatga tgcttatgtt ggaggtatag tagggcaaaa tattgcaaac agttatacgg
     3841 gttttgaaaa tgtgactgtt catgatctcg ttattaatac agctgtaaat actaaagttg
     3901 gcggaataat aggctgggga aatggtagtg gagggaataa cactatcaat tttacaaatg
     3961 ttgctattaa taatataagt atagtagcaa aagaaggttc ttatgtgggt ggcataggca
     4021 gacaaattga tggtggtaat tttaataatg ttgtggttaa tgacatagaa aaacttataa
     4081 cttctgggaa tgatagtaaa acaggaggat ttactggaaa agttggaaat ttaaagatta
     4141 ataatgctta cttattttat aaaaatggag caattttgag tgctggaaac tataaaacac
     4201 aagctggaaa agttattggt gatcctggaa ttagtgtaaa taataatttt agtaatattt
     4261 atgtttatca taatttagaa aatggttaca ttgatgaagg acagaatttt tttaagtctg
     4321 tgcaatataa taatgaagta acaggaaaaa aagattttga tagcgctgta agaaagaaat
     4381 ttaacgatat aaaatatctt gataataatt cttatgcttt tgctgattct tttaccaagg
     4441 taacagatgc tgtgaaatta tccaaagacg actttgaccc taaattgctt caaagaattt
     4501 tagatgattt gatgaatgga aaatacactt atgattttga taccaaaact tggacttacg
     4561 cagatagcaa gggtgtggta ggggaaaatg aagccagtga gatcactcaa agtttaaatt
     4621 tcttaaatgc gtttaaagat accggagtag aacaagaatt tttaaagtta tggcaaggtt
     4681 cgcaagaaca aagttataag aattacgcca atctttatga aaaatggacg caaaagaaaa
     4741 ctgctatgga taaaatcaaa accggcgaag gttatttcgc tagttttaaa gaagaattat
     4801 aaaaatacca agaagcctta gctcaacttg acaaagaaaa taaaaactat gaaaaaatca
     4861 aagaatcagg cttagttagc gatgaaacac ttaaagttat gcatgaaaaa cttttagaac
     4921 aaaaagaagc tcttgaaaag cagtttgcgg atcttagtgg aaatgaagga tttcactata
     4981 agcttgaaaa tgagattcta aattctcaag gttttgctat aaatggaagc gatgtagatg
     5041 gtaaagtgta cactggaaaa tataattttg aaggaaaatt agcctcattg ccagaaaaat
     5101 caaatatatc tatctatgag ccagataaac aaaaaaagag ggagaggggg gggtgaagat
     5161 ccagacaaac cttctgtatt gccgcctgaa attcctgaaa aggttgtaga agctcctata
     5221 aaaattcaaa ctaaagtaga cacaaaaaaa gaagatgatg atcaagtgga cataggagaa
     5281 gtagatgcta gaagtagtgg tttgcgttgt attgtaagtg ataattttaa gacaatgaac
     5341 atttgtgtaa atgcaaaata ggaaataaaa atgagaaaaa ttttagttgt tttaatctta
     5401 ttgtaagtat tttcacatgc tgaagagcta aataataata aaataagaga gcttatagaa
     5461 agctcttctg aagcaaatgg accacaaaat aaaaattaaa aaatacatta aaaaatcaaa
     5521 aaagccctgt aaattttaaa gagcaaaata ctacaaatat tgcaaattta caaactgatc
     5581 aaaatgaagc taaggttttt gtaagagagt atgttttgca tatcgataat aaagatttga
     5641 catttaaaaa attaagaatt agcgaaaaat aaattcaaga tgcaatagct gaatatcgca
     5701 accaagaatt aagcttacaa aatttaaaag atataacaaa cattatagtt tattattgtc
     5761 aattaagtgg ccatccttcg gcaactgctt atataccacc gcaagattta agttctaaca
     5821 aagtgcaaat taacatagtt tttggaactt ttaggaaaag taattattaa aaacaactca
     5881 ggtgtcagag attatgcttt agagagtaaa ttgaacaaaa atcttaaagg gaaagttatc
     5941 acaactaaaa atgtggaaaa tgaaatttat aaaatcaatg aaatatacgg aatccaaacc
     6001 aatgctaatt tacaatcagg tgatggttgt ggagaaagcg atgttattat agaagtaaac
     6061 aaaggtgata gtgcaacttt aactttatat tctaacaact atggggctaa agaaacaggt
     6121 cgttttagag caggaatgag tcaaagttta aacaatatag caagacaagg ggataactta
     6181 aatttttatc ttcaagatag cgatgaaaat caaatagatt atgggattaa ttatagtact
     6241 tttataggaa atttaaaaat tactccattt gcaactcaag gacattatgt tcttggtgga
     6301 atttatagaa atcttggttt ttatggggac tctatgaatg ttggggtaaa tttttcttat
     6361 cctgtgtttt tatataccga gtattcttta tatcttgttt cgggttttac tcataaaaag
     6421 attaaagatt attatcttga tggtttagta agtaatgaaa aagcgagcaa tagtgtaaat
     6481 ttaggcatag aaggaaccta taaaggtttg gagaataatg tcctaagtta taccttaaat
     6541 tttacatatg gcaatgttga aaatgatggt gattcgtctg gatttaatgg agtaaattta
     6601 gggaattttg gaaaaatgaa tttaaattta agcaacaaat atcaattcta agaacgctta
     6661 actcacattt ttcaactcaa ttatcaaaaa gttatcggtg gtgctgtttt agatggtagt
     6721 gaatccgtgt ctttaggtgg accttatggt gtgcgtgctt atttagaagg cgaggggagt
     6781 gcggataatg ttgtttctgg caccttagga ataagatttc aaacaccttt agaagggctt
     6841 tacttgactc ctttttatga tataggatat tcttggtatg aaaataaaga atatcaaagc
     6901 aaaaatcatt attttatgga tgcaatgggt atgcaaatac tctatacaag aagtgctaat
     6961 ttttatgtaa aaatggatgc tgcaagagct gttcatcggt ttaaacacga tggagaacat
     7021 cgagcaagag tttatgtaag cctaggaaaa tacttttaac tttggggtga ttggagaaat
//
LOCUS       DARBBO010000080         6978 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.080, whole genome shotgun sequence.
ACCESSION   DARBBO010000080 DARBBO010000000
VERSION     DARBBO010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6978)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6978)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6978
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.080"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            233..763
                     /locus_tag="SB854_001367"
     CDS             233..763
                     /locus_tag="SB854_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG0957354.1"
                     /translation="MQNTIIQKAVNKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(743..1345)
                     /gene="leuD"
                     /locus_tag="SB854_001368"
     CDS             complement(743..1345)
                     /gene="leuD"
                     /locus_tag="SB854_001368"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEG0957355.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKEEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLGIVDELKKSQDKNIEISLLEKRVFFKDRIFS
                     FDLDDFHRICLLEGFDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(1347..2759)
                     /gene="leuC"
                     /locus_tag="SB854_001369"
     CDS             complement(1347..2759)
                     /gene="leuC"
                     /locus_tag="SB854_001369"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEG0957356.1"
                     /translation="MIMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSVDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVGPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIRNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ASITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALYYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(2746..3822)
                     /gene="leuB"
                     /locus_tag="SB854_001370"
     CDS             complement(2746..3822)
                     /gene="leuB"
                     /locus_tag="SB854_001370"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEG0957357.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHTSPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIAHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYQDINLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTNEMGDCILEILKENNNG"
     gene            complement(3819..5354)
                     /gene="leuA"
                     /locus_tag="SB854_001371"
     CDS             complement(3819..5354)
                     /gene="leuA"
                     /locus_tag="SB854_001371"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEG0957358.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGMATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENK
                     FILEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPALKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGISTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            5674..6303
                     /locus_tag="SB854_001372"
     CDS             5674..6303
                     /locus_tag="SB854_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957359.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(6339..6944)
                     /locus_tag="SB854_001373"
     CDS             complement(6339..6944)
                     /locus_tag="SB854_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HEG0957360.1"
                     /translation="MFSNLALADENSGFFIGADAAWMHAQVKSELKHKNTKQNFNGDI
                     SGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGDFTTHKFLTGYDFT
                     PKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIGALYDLTSHNEIEL
                     GFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
BASE COUNT         2371 a         1317 c          907 g         2383 t
ORIGIN      
        1 gaataaaaag aaccaaaaaa ataaaaaatt ttcttattaa attatcagga taaaaagtta
       61 taataatctc atcagaggag gatagtggcg gaatgagacc ctcccctttt ttatatttta
      121 aatagggttc tttttggggt tctttaaaaa atataaaaaa ctgcaaatat ctaaaaataa
      181 gcctttataa atattagtta aaactcaatc ggaccttata caaaggatta tcatgcaaaa
      241 cactatcata caaaaagccg tcaataaaga tttaaattct atacttgaaa tcacaaaaga
      301 tgctttaaat gctatgaaaa ctatgaattt tcaccaatgg gatgagaatt atcccaatga
      361 aatagttttt caagaagata tacaagcaca agaactttat gtgtttaaag aaaatgatga
      421 aattttaggc tttatctgta tcaatgaaaa atttgaacct gaattttaca aacaagttat
      481 ttttaacaaa aattatgatg ataaagcctt ttatctacac cgtttagctg tcaaacaaaa
      541 tgcaaaaggc aaaggcgtgg cacaaaaact tttaaatttt tgcgaaaatt ttgccttgga
      601 aaatcacaag gcaagtttaa gagcagatac tcatagtaaa aattttccta tgaattcgct
      661 ttttaaaaag cttgatttta atttttgtgg aaactttgac atacctaatt accaagatcc
      721 ttttttagct tatgaaaaaa ttctaaacca aaaagctttt tgagtttttt tcataggctt
      781 tgatttgtgc ttcatgtttt aaagtcaaag ctatattatc aaatccttcc aaaagacaaa
      841 ttctatgaaa atcatctaaa tcaaaagaaa aaatcctatc tttaaaaaat actctttttt
      901 ccaacaaaga aatttctata tttttatctt gggatttttt taactcatca actattccca
      961 aaacctcatc tttagcaagt tctatggtaa gcaaaccatt tcctaaggca ttgtttttaa
     1021 aaatatccgc aaaagaaggt gcgataatag ctctaatacc ataatcaacc aaagcccaag
     1081 gcgcatgctc tcttgaagag ccactaccaa aattttcaaa actcaccaaa atagagctat
     1141 tttgatattc ttctttgtta agattaaaat ccatatttaa aacactttct ttatcatcta
     1201 aataacgcaa atcatggaac aaatgcttac caaaaccttg cttagacact gcaagtaaaa
     1261 attgcttagg tataatttga tctgtgtcta tattggcata ttctaaagga caagctatac
     1321 ctttatgtat aataaatttt tgcatattaa actcctaaat actttctatt atcacaaata
     1381 acaccttcta tggcacaagc tgctgcactt gcaggactca tcaaatgagt gatagaacct
     1441 ttgccttgtc tgcctacaaa gttacgattt gaagttgaag caactctttg acctgaattt
     1501 gctttgtcat cattcatacc aagacacata gaacaccctg catatctcca ctcacaccct
     1561 gcctcgataa aaatcttatc aagtcctaaa ttttcagctt cttttcttac ttgcattgaa
     1621 ccaggcacaa ttaaagcttt aacattttta tgaattttgc gcccttttaa gatatcagcg
     1681 gctattttaa gatcttctaa acgcccattt gtgcaagatc ctataaatac aatgtcgatt
     1741 tttacccctt ctataacttg atcttgctct aaatttacat aatataaagc atcaagcaaa
     1801 gatttttgct cgctttgatt tttaaaatca cttatttttg gaattttttc atctatgcca
     1861 atcacttgcg aaggatttgt tccatagcta atttgtggtt ttatcttgct tacatctaga
     1921 gtaatactcg catcatattt tgctccttca tcacttctta aactcttcca atactcacaa
     1981 tacttttgaa attcttctcc tttaggtgca aattcctttc ccttaatata ctcaaaagtg
     2041 atctcatcag gagctatcat acctactttc gctccaaatt ctatagccat attacaaaga
     2101 gtcattctag cttccatact tagatttctt ataagttctc cgcaaaattc tatagcatag
     2161 cctgtgcctt ttgctgtgcc gtattgtgcg atcaaataca aaatcaaatc cttagcataa
     2221 acgccttttt gaaactgccc tttacattcg attttcatag ttttaagttt ggcttgtttt
     2281 aaagtttgcg ttgccatgac atgctctact tcactcgtgc ctataccaaa ggctaaagct
     2341 ccaaaagccc catgtgttgc cgtatgagaa tccccacaaa ctaaagtaac cccaggtaaa
     2401 gtaaagccaa gctcaggacc tactatatga actatgcctt gatttttatc tccaagtcct
     2461 aaaagcctta ctccaaattc cttagtattt tgcatcaaag ttgtaatttg ctcttttgcc
     2521 atatcagaac aagcatttaa atccacactt ttagttgaaa catcatgatc tatggtagcc
     2581 aaagttaaat ccgctcttgc cattctacgc ttagccattt taagccctga aaatgcttga
     2641 gggcttgtta cttcatggat taaatgtcta tcgatataaa gtataggaag ttcgtttttg
     2701 ccttcataaa ccacatgagc atcaaagact ttctcatata aagttttagc cattattatt
     2761 ctcctttaaa atttctaaaa tacaatcccc catttcattg gtatttaaat acgacttagc
     2821 atttaaatcc ttagtcattt ttccttgtgc caatgctaaa gatatagcat tttctatatc
     2881 ctgtgcggct tgttcttctt tgaaactata ctttaacatc aaagccgcac ttaaaatttg
     2941 agctatggga ttagctatat ttaaatgagc tatatcaggc gcacttccac ctgctggctc
     3001 ataaagtcca aaacctttat cgtttaaact tgctgaactt aacaaaccca aagatccatt
     3061 aatggcagct aactcatcac tcaaaatatc accaaaaaga tttgaacaaa gcataacatc
     3121 aaaaatgcta ggatttttta caatctgcat cgcagcatta tccacataca tgtactctaa
     3181 gtttatatct tgataatctt ttgcaacatt tgccaccact tctcgccaca aaatagaact
     3241 tgctaaaaca ttcgccttgt cgattaaatg cacttttttc tttcttattc ttgcactttc
     3301 aaaagcgata tgagctatcc tttctatctc ttttttagtg taaatttcag tatcatacgc
     3361 actttcttta cctaaatctt gcttaccaaa ataaatccca cctgtaagct ctctaacaca
     3421 taaaatatcc actccttttt ggataatctc attttttaaa ggtgaagtat gagttaaact
     3481 ttcataaatt ttacaaggac gcaaatttgc aaacaaatta aaatgctttc ttaaaggcaa
     3541 aagcgaggct ctttcaggtc tttgatctat gggcaaatta tcccacttag gccctccaac
     3601 agagccaaat aaaatcgcat cactttgctc acaaagcttt aaagtttcat cacttaaagc
     3661 cactccataa gcatctatac ttgcaccgcc tattttagct tcattaaatt caaaactaaa
     3721 attgtatttt tgcgcgataa aagttaaaat ttttaaagcc tctttcatta ccaaaggccc
     3781 tataccatct cctgctaaga cagctacttt ataagttttc atgccatttt cctttcttct
     3841 acttttaaag agcgataaat cgcattgtaa gcactcacaa aagcttgtgc tgaagcttct
     3901 ataacatctg ttgaaattcc ttttccatgg aattttctcc ctttaaattc caaatccaca
     3961 tccacttgtc cttgagcatc tacccctgaa ctttttgcat tgatactata agcttttagc
     4021 gcaggcttta aattcgttat cctagcaatg cagttaaaaa ctgcttcaac aggaccattt
     4081 cctgtgcaag cttcagtttt taactcttct ttaatacgca tacaaacaca agcagttggg
     4141 atattgccac taatcacgct taatttttca agtataaatt tattttcttc ttcattttca
     4201 tagcttaaaa acatcaaagc ttccaaatca taatcataca cttgaccctt tttatccgca
     4261 aggcgtaaaa aacgctcata aacatcatct aaattataag tattttcatc atagcctaaa
     4321 ttttcaaggc aagtttttat catagccctt ccacttcttg ccgtcattaa catacgattt
     4381 tcatgaattc ctatggcact agggcttatg atctcgtaag tttgcctatt tttaagcact
     4441 ccatcttgat gaatgcctga actatgagaa aacgcattgc tacccactat agctttatgc
     4501 gaaggtatac tttcattagt gatagctgaa actaattttg aagttttaaa gatattttca
     4561 catttaatat cagtataaaa accttttaaa taatctttcc tagtttttat cgccataacc
     4621 acttcttcta aagcacaatt acccgccctt tcgccaagtc catttatagt gcactctatc
     4681 tgtcttgcac cttgtaaaat agcacttaaa ctattgcccg ttgccatacc taagtcattg
     4741 tgacaatgca cagaaatgat agctttgtct atatttggca ctttgttaaa taaaattttg
     4801 atgatattag caaattcact tggcaaggta tagcctacgg tatctgggat atttatagtt
     4861 ttagcgcctg cttttatcgc attttccacc ataaaacaaa gattatctat cggagttctt
     4921 cctgcatctt cgcatgagaa ttctacatca tcagtataag atcttgctct tataatcgct
     4981 ctttttgcca tagacaaaat ttcatcaaaa tcttttttta atttatcttg catatgcaaa
     5041 gtcgaagtgg ctataaaagt atgaattcta aaatgctttg ccacttttaa agcttcataa
     5101 gccatatcta tatctttatc caatgctcta gaaagtgcac aaatagttga gtttttaacc
     5161 ttagaagcga tcttttgcac cgctttaaaa tccccttgtg aagataccgg aaaacctgct
     5221 tctataacat ctacgcctaa attttcaagc gctaaagcga tttgtaattt ttgattgata
     5281 cccaaagaac tgcctaaagc ttgttctcca tctcgcaaag tggtatcaaa gattatgatt
     5341 ttattatctt tcatgattta atcctttaaa accaaacaga ctgaatgaat taaaaattca
     5401 aaaacttaac aacaacaata aaaaattaaa aatgtaaaaa atgattaaaa ataaaattga
     5461 gttttagagt gaaagttgca gtagcagatt aaaagtattg tctttacttt tttgttggac
     5521 tgaatttgaa atttcaaaaa tttgtttcat cttttcctcc tttgttaaaa ttaatactta
     5581 atgtatcata tttttagtaa atgtgtttgt aaaattctta aattaagaaa attattgata
     5641 taattgtaat tttaagtaac aaaaaggaag ttgatgttaa aagaactctt agagattaaa
     5701 aaagaaatgg aacctgttat ccacgaagcc aatgtgaaat taaatgtcct agctcgtgaa
     5761 gtcatagtcc gaaaaaaaga atacgaaatt tatgggccta tggtagatcg tgtttatctt
     5821 gataatgcca tttatgttaa agttatgtca agtggacgcg atgtaaaaac agacaatgtg
     5881 actataaaaa atggttttta tatggttttt gttgcccctg aaaaagaaag tacaaaagat
     5941 atcaaaaata aactcaaagt agcttatgaa ggacttgata acaaatttat cgctacactt
     6001 atacgatctt gccaacgctt taaagagatc ataaacaaaa cccaagctac acttgctaaa
     6061 gcttctaaaa tgaatgtggt agtaaaaacg aatttaggtg aagcaagtgc tgctctaaaa
     6121 tttaacatca ctatagaata tactaaagag aatcaaaaac tcactcgtga aaattcaaaa
     6181 tcagcaggaa gtttcagaga tactaaaact tatatcaatc ttgtagtaga aaaaaataca
     6241 gattctcaaa tttgtgaaaa actacttgat gatgttgaaa aatactttat cggtggaggt
     6301 tgatttcatt aatgcaagtt ataaaaactt gcattagatt aaaatttata attatatcct
     6361 aaatatacac cataatttgt ttgtttagga tcgtaaaagt ttgaacccac tttattttga
     6421 taaaaatttc tagaattata atgaatttgc tctgctttaa agcctaattc tatttcatta
     6481 tgtgatgtca aatcatataa agcacctatt ttcgctccat aaaaataacc gtcaaaattt
     6541 tgcgacaaag ataaaaagct tgtttttaag gtaagatctg ttcttgcata tcctccatac
     6601 acacctaaaa cagctctggt tttttcaaaa agcttaggag taaaatcata acctgttaaa
     6661 aatttatgtg tagtaaaatc accttcgatt tgaattttag gagttttgat aaaatcacta
     6721 aattcatcag aataattata accagcataa attctatgat tttcatttag acgatatcca
     6781 agttttagac caaacgatgg tatattacct gaaatatctc cattaaaatt ttgctttgta
     6841 ttcttatgtt ttaactcact ttttacttga gcatgcatcc aagctgcatc agcacctata
     6901 aaaaaaccag aattctcatc tgctaaagcc aaatttgaaa acaaagtagc acttgcgata
     6961 atgcttaata atttttta
//
LOCUS       DARBBO010000081         6966 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.081, whole genome shotgun sequence.
ACCESSION   DARBBO010000081 DARBBO010000000
VERSION     DARBBO010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6966)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6966)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6966
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.081"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..677)
                     /locus_tag="SB854_001374"
     CDS             complement(<1..677)
                     /locus_tag="SB854_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0957361.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELTIAKREWFKSKWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YVYIPDF"
     gene            complement(670..1896)
                     /locus_tag="SB854_001375"
     CDS             complement(670..1896)
                     /locus_tag="SB854_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957362.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGTSTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCACEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYRLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNPNRHFANNY
                     HFAKELALELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKHDMDKKIVK
                     VKLGKYEKVYQILNYD"
     gene            2024..2608
                     /locus_tag="SB854_001376"
     CDS             2024..2608
                     /locus_tag="SB854_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEG0957363.1"
                     /translation="MQTIDQIFQTQIDIKKSTFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLVRAYSDAANAVINNSSLLSFELKKNTTIAIDLKNLNRFEHFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            complement(2652..3035)
                     /locus_tag="SB854_001377"
     CDS             complement(2652..3035)
                     /locus_tag="SB854_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957364.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQIEDYSSSGDSDFMDMLNK
                     ADEKSSGDALNSSSSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLTQQGANEQSKNNTLLNDLLNAI"
     gene            complement(3110..3445)
                     /locus_tag="SB854_001378"
     CDS             complement(3110..3445)
                     /locus_tag="SB854_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957365.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(3435..5012)
                     /locus_tag="SB854_001379"
     CDS             complement(3435..5012)
                     /locus_tag="SB854_001379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEG0957366.1"
                     /translation="MVEVKNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFL
                     KILSGEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKL
                     YMSEEFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADK
                     FKVLLAQVLFLGADVLFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKIC
                     TRILDVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANAS
                     KAKQATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEIKGIGKAYDKQLFS
                     NLELKIEKNDKIALIGANGVGKSTLAKIIAHAISPDSGSIHLGATIELGYFPQDTSNL
                     ICENLKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLML
                     ERPNFLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGK
                     LTDFRGTYQEFLGENDG"
     gene            complement(5142..5558)
                     /locus_tag="SB854_001380"
     CDS             complement(5142..5558)
                     /locus_tag="SB854_001380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957367.1"
                     /translation="MFKKVILFFLMGFALLQANSLDKCDNTAVVSNLKEKIPSEIFKN
                     LYELSGLKAQGIDYEDYAKGLKEIAKHDGMVNYTDMIEINSISNFDLNFDSCMATINA
                     ALKGEQRKGLWSVVYKVSNINQVKITDITYINGDFQ"
     gene            complement(5571..6203)
                     /locus_tag="SB854_001381"
     CDS             complement(5571..6203)
                     /locus_tag="SB854_001381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin-antitoxin system YwqK family antitoxin"
                     /protein_id="HEG0957368.1"
                     /translation="MTKFLSICSLIAMLLSGCGSDFPGQPSDVARVQQNKYPNGNLKE
                     EIPYNKDSRIHGLKRAFYDNGQLRAEENYKNGKKDGISREYSRNGQLLEEVHFKDNRG
                     YGDFASYYENGNMRAKGKLLGYNEDGMPEFEGNYKEYYENGTLMCDYNFDNKGKFDGV
                     QKRYDENGALEDEENYKNGLKNGVFREYKKGEIVREEEYKNGILVAKPKN"
     gene            complement(6212..6439)
                     /locus_tag="SB854_001382"
     CDS             complement(6212..6439)
                     /locus_tag="SB854_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superinfection immunity protein"
                     /protein_id="HEG0957369.1"
                     /translation="MEGASGGSIFVTILLFVLYMLPAIIGLSRKHSNWLIISLLNLFF
                     GWTIIVWLVCLIWSFTGSFKQTIIIKEKNEK"
     gene            6608..6817
                     /locus_tag="SB854_001383"
     CDS             6608..6817
                     /locus_tag="SB854_001383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEG0957370.1"
                     /translation="MTKKSKRDMAYELDIDVSTLYNWRKYKPNLYRIVMLGFKFDELL
                     DNSKKTHEELLHIEQTIQDEIAKFK"
BASE COUNT         2510 a         1222 c          796 g         2438 t
ORIGIN      
        1 ttaaaatctg gaatataaac ataaccgcta agcgtatcta taacgataca aagagcatgc
       61 ttttttgata acaaacgtat aatgcaatct gaattattct ttgctaaagt tttttcatag
      121 gcataattgg cattttttaa cggagaatac actctgccca tttcatcaaa tactaatcta
      181 gtaaatcctg aacaagatcc tttgaattca accttttcta ttccgaatct ttttgtaaga
      241 ttaaatcttt gtgtagtttt ttcatcatct ttactaataa ctccactttg acctgaattc
      301 attaatttgt tatgattgat tacatcaaca gcaatttctc tatctatatt gatttcagtt
      361 ttacctaaat tagcatttcc atcgccattt ttatccaaga aaatagtata tgtttgatca
      421 taacctgtgg cagctgattt tataaaataa atctgccatt tacttttaaa ccactctctt
      481 tttgcaatag tcaactcatc aactcttata ccttcttgca tcatggctaa actttgggta
      541 tattggatat cattaagaat ttgtatcgca ccttctagta gattgtcttt ttttaagtaa
      601 agactgccta aattaaaaac tatacctaaa atgagaatta taaacacaaa ttccaacaaa
      661 ctgaaagctt taatcatagt ttaaaatctg atatactttt tcatattttc caagttttac
      721 tttaacaatt tttttgtcca tatcatgctt atcggcttgt tttaaagctt ttaaataaaa
      781 cttattgcta ttttttattc cataaaatcg caatcttttt tgcaaacttg gggctgttgc
      841 aagctctaaa acatcttgtt tttttaattc tagtgccaat tctttagcaa aatgataatt
      901 attggcaaaa tgacgatttg gattgtttat aaaataatac aataattgat tagcgacgat
      961 taaaaagtaa caaaatatca aaaaaattat agaacattct ataaagattt tataccttaa
     1021 tcgaaaaact ggtaatctca ccctataact ttgcattaaa gtttttataa gcaaaggagt
     1081 gcaaataaca caaaaaggca aaaaatcatc taaaaaaagt ttttgtctta aagaaagcaa
     1141 caaacaaaat acaaatgtta cgctcattaa aaaccataat aaatttttat atttttgaaa
     1201 agtcaaacga taaatagtat aaaaaaaata cacaaaaacc aaaggagaaa aacatgcagc
     1261 aaaaattcct aaggtatcta aaaaataacc tcttggacga ccacctgtat caaaaccata
     1321 aaaactgata ctcgctccaa acaaaacaag agataaggta aataaaatag catttctttt
     1381 ataaatccca aaaaagaaaa aagttaaaaa taaaatatta aaagatttat caacaaataa
     1441 tactataatc aataatatat aaaaaagcca ttttttttca tattcgcaag cacataatat
     1501 agcaagggtt aaaaaaatca ccaaagatgc ggcattaacc agtaaagcac ttgcaacagt
     1561 acccggcaat aaaacaaata acaataaaga aaaaaaagca tcaattttag ttttagtata
     1621 ttttaaagct agcaaataca aaagcaaaca acttaaaaaa tgaaaaaata aaaaaggaag
     1681 ccttaaacca aaatcatttt gcccaaaaat aaaagttcca aaatgagata tataataaag
     1741 caaactatga gaaaaaataa gtgatttacc ctgctcacca aaataaatat cagcttcatc
     1801 agcactaata ctcagtgttg aagttccata aagcaaagcc aacaaatcaa gactaagtaa
     1861 aatgatgata agtttataat ttttgatttt ttccataatg aaaattttac aaaattaaac
     1921 ttaaaatatc aatgcaaatc atacaaatat caaatatctt aaaaattaac atcaaattga
     1981 ttttagtttt tataagtata attttaaata aaagaaggca aaaatgcaaa ctattgatca
     2041 aatttttcaa acacaaatcg atattaaaaa atctactttc ttatcttttc tttgcccttt
     2101 taaagatttt aaatttttaa tagaaacact aaaaaaagaa catccaaaag ccgttcattt
     2161 tgtctatgct tatcgtgttt taaatgattt caatcaaatt gtagaagata aaagtgatga
     2221 tggagagcct aaaggaactt ctggaatgcc aactttaaat gttctaaggg gctatgatct
     2281 tatcaatgcg gctttaatca ctgtaagata ttttggcggt ataaaacttg gtacaggggg
     2341 acttgtaaga gcttatagcg atgcagcaaa tgctgtgata aataattctt ctttactttc
     2401 attcgaattg aaaaaaaata caaccattgc tattgattta aaaaatttaa atcgttttga
     2461 acatttttta aaaacttatt cttttaattt cacaaaagat tttaaggatt gcaaagctat
     2521 attacatatc aaattaaatg aaaaagagga gcaagaattt gaaatttttt gtaaaaattt
     2581 tgcacctttt gaaatagaga aattataaat tcttgcaagt aaatataaaa gctccaaaat
     2641 ggagcttttg attaaattgc gttcaataaa tcatttaaca aagtattatt cttactttgt
     2701 tcatttgcac cttgttgtgt aagatcatta tgaacgctag cactttgagc tctcatagac
     2761 agctcgcctt cattttgtct aaaacgataa gcgtaaacat ttgacatttg agcataatta
     2821 cttaaatttg aatttgagtt ttgcgcattg ctttgaaaac tactgctaga atttaaagca
     2881 tctccgcttg acttctcatc cgccttattt aacatatcca taaaatcaga atctccagat
     2941 gaagaataat cttcaatctg tttatccacc tgtttatact gaccactaat agcatcgtat
     3001 tcatacgagc taatcgttct ataatttacc tgcatagttt tctcctttca aaatatgcaa
     3061 aaactataca agcaaaaagc gttccttttt atgtaaaaat taatgttttt taatcatggt
     3121 gagtaggcaa atgctccaca tcaagctcat tgttggctat aaattcctcc ttggcttttt
     3181 tacagttttc atcacgcatt ttgcggtatt cattgcgaat ggtgatttct ttatcgctta
     3241 gaggtctatc ttctaaaaaa ctgatatgaa aataagtatc atcgctcttt gaataagttt
     3301 tataaaaatc tatatagtca aaataatcct tgccattatc aaactctacg acctcttcta
     3361 tataaatcgt aggtccaaaa cccttgtgat tttgcgtata gtgcccaaaa cctgcgctgt
     3421 attgaattct aaatttagcc atcattttct cctaaaaatt cttgataagt tccacgaaaa
     3481 tccgtaagct taccattttc taaatgccaa attctattag caaaagcaga aactaactcc
     3541 ctatcgtggc tgatacaaag cactacacct ttgaaattat acaaagcttc acctagtgca
     3601 ataatacttt caagatctaa atggttatca ggctcatcta aaagcaagaa atttggacgc
     3661 tctagcatta aacgagaaag cattaaacgg tgtttttcac ccccacttaa acttgctgcc
     3721 atcttttctt gatcactgcc actaaaaagc attctaccta aacacttacg gatttcatct
     3781 agatctttaa atttttcact catcaaccat tcataaagtt tcaaattttc acaaattaaa
     3841 ttacttgtat cttgaggaaa atatccaagc tctatagttg ccccaagatg tatagatcca
     3901 ctatctggac ttatagcatg ggcgatgatt tttgccaaag tacttttgcc cacaccattt
     3961 gccccaatca aagcgatttt atcatttttt tctattttta gctccaaatt tgaaaacaat
     4021 tgtttatcat aagccttgcc tataccttta atttctaaaa cttcattacc tatttcacga
     4081 ttagttctaa atactatact aggatctcta cggcttgaaa ttttaatctc ttcaagctct
     4141 agtttttcaa gcgccttagc acggcttgtg gcttgttttg ctttagaagc atttgcacta
     4201 aaacggcgaa tgaaattttc taattcttct ctttctttta aggttttatc gcgtttaagc
     4261 tcagcttgtt ttgccaaaag cgttgaagcc atataccaat catcataatt tcccgcaaaa
     4321 tcacgaattt gtttaaaatc cacatccaaa atccttgtgc aaattttatt taaaaaatgc
     4381 ctatcatgag agatgacaac caaagttcct tcatgtctta aaagttcatt ttcaagccaa
     4441 gaaatcgcct ctaaatcaag gttatttgta ggctcatcta aaaaaagcac atccgcaccc
     4501 aaaaacaaaa cttgagctaa caaaacttta aatttatccg cactttgtaa ggtgctcatt
     4561 aaagcatcga aatctttaat ctttaaagaa cttaaaattt tttcacaacg tgtttcacaa
     4621 tcataatttg gatcttcttc agccgttatt atctcaagct cacctaaacg ctcattgatc
     4681 tcatcagtaa attcctcgct catataaagc ttttcttttt cttttaaggc ctcatataaa
     4741 cgcttatttg cacacatcac tgcatctttg atggtgtagt tttcaaaagc aaattgatcc
     4801 tgtcctaaaa ctgcaatttt taaaccttca tcaaatacta tttcaccact acttgactca
     4861 atttctcctg aaagaatttt caaaaaagtc gattttcccg caccattagc accgataagt
     4921 ccgtatcttt gtcctcgaac aagttttaaa ttaacatttt caaataaaag ctgatttgca
     4981 aaacgcatag taagattttt tacttcaacc atgattttcc ttaaattttt tacttataaa
     5041 aatttttaag aaattgtatc aaaaaaagac ttgaaattaa ttgagtataa aatattagta
     5101 agtcatgaaa ttaattctat tgacttactt taataaaaat attattggaa atctccattg
     5161 atataagtta tatctgtaat tttcacttga tttatgttag aaaccttata aacaacactc
     5221 caaagacctt ttctctgttc cccttttaat gcagcattaa tcgtagccat acaagaatca
     5281 aaattaagat caaaatttga aatggaatta atttcgatca tatcagtgta atttaccatt
     5341 ccatcatgct tggctatttc cttgaggcct tttgcataat cttcataatc aatcccttgg
     5401 gctttaagtc cggataattc ataaagattt ttaaaaattt cactaggaat tttttcttta
     5461 agatttgaaa caactgccgt attatcacat ttgtctaatg agttggcctg aagcaaggca
     5521 aaccccatta agaaaaataa aattactttt ttaaacatat ctaaactcct ctaattttta
     5581 ggttttgcta ctaaaatacc atttttatat tcttcttctc ttacaatctc ccctttttta
     5641 tattctctaa agactccatt tttaagtcca tttttataat tttcttcgtc ttctaaggcg
     5701 ccattttcat cataacgctt ttgtactcca tcaaatttac ctttattatc aaaattataa
     5761 tcacacatta aagttccatt ttcataatat tccttgtaat taccttcaaa ttctggcata
     5821 ccatcttcat tatagccaag tagttttccc tttgctctca tatttccatt ctcataatag
     5881 cttgcaaaat caccatatcc gcgattatct ttaaaatgca cctcctcaag taattgccca
     5941 tttctagaat attccctgct aattccatct ttttttccat ttttataatt ttcttcagct
     6001 cttagctgac cattgtcata aaaagctctt tttaacccat gtattcttga atctttatta
     6061 tagggaattt cttcttttaa atttccattt ggatatttgt tttgctgaac tctagccaca
     6121 tcgctaggtt gtccaggaaa atcacttcca caaccactta acaacatcgc aattaaacta
     6181 caaatgctta aaaattttgt cattttttct cctatttctc atttttttct ttaataataa
     6241 tagtttgctt aaaacttccc gtaaaagacc atattaaaca aacaagccaa acaataatag
     6301 tccaaccaaa aaacaaattt agcaaagaaa ttatcagcca attagaatgc tttctgctca
     6361 aaccaataat agcgggcaac atgtataata caaacaataa tattgttaca aaaatagacc
     6421 cgccacttgc accttccatg taattctcct taaataaaaa ttttataaaa actattattc
     6481 catactataa cttaattaat attgaaatat taaatatatt ttatataaaa gattgaatat
     6541 ttcaagtgtt tttaataaag aaattttaat gtaaaatttt ttaaaggcta aatttttaag
     6601 gtaaaaaatg acaaaaaaga gcaagcgtga tatggcatat gaactagaca ttgatgttag
     6661 cactttatat aattggagaa aatataaacc caatttatat cgtattgtta tgcttggctt
     6721 taaatttgat gaacttttag ataatagcaa aaaaactcat gaagaattac tccatataga
     6781 acaaaccata caagatgaaa ttgctaaatt taaataaaat ccgcttttaa gcttttttct
     6841 atacaattat cacttttatt aaaatcaagg atttgataat gtttttatta gattttttaa
     6901 tatcattgag ttttattttt gaaatttcag cacttgtatt atccttttac tttaaaaatt
     6961 caaaaa
//
LOCUS       DARBBO010000082         6912 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.082, whole genome shotgun sequence.
ACCESSION   DARBBO010000082 DARBBO010000000
VERSION     DARBBO010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6912
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.082"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..603)
                     /locus_tag="SB854_001384"
     CDS             complement(<1..603)
                     /locus_tag="SB854_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HEG0957371.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWEFKSW
                     DKMIMPKPFSRITYSLSEPLDILSLDKEKAKEFLMEQFDKI"
     gene            complement(587..1888)
                     /gene="miaB"
                     /locus_tag="SB854_001385"
     CDS             complement(587..1888)
                     /gene="miaB"
                     /locus_tag="SB854_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HEG0957372.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEEIASRRLSTLQNRHSEILDKIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            complement(1885..2127)
                     /locus_tag="SB854_001386"
     CDS             complement(1885..2127)
                     /locus_tag="SB854_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957373.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            2255..3343
                     /gene="nusA"
                     /locus_tag="SB854_001387"
     CDS             2255..3343
                     /gene="nusA"
                     /locus_tag="SB854_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEG0957374.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(3359..4546)
                     /locus_tag="SB854_001388"
     CDS             complement(3359..4546)
                     /locus_tag="SB854_001388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0957375.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLVRLSIPDFHQKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGLGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            4620..5666
                     /locus_tag="SB854_001389"
     CDS             4620..5666
                     /locus_tag="SB854_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HEG0957376.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLKRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALARLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            5666..6886
                     /locus_tag="SB854_001390"
     CDS             5666..6886
                     /locus_tag="SB854_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEG0957377.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKTLQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELGK
                     NIKDEILVRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLMEKVKLETINAYIKKHQ
                     ELLNISFASIQNEN"
BASE COUNT         2506 a          984 c         1118 g         2304 t
ORIGIN      
        1 aattttatca aattgttcca ttagaaattc tttagctttt tctttatcta aagataaaat
       61 atccaaaggt tcacttagac tataagtaat cctactaaaa ggttttggca tgatcatctt
      121 atcccaactt ttaaattccc aaaaacgatt tgcttcatag tttaaaattc ttatctttag
      181 ttcttttttt tgagccaaaa tgatagaccc atctgaaata ctatgataag gccctcgtgg
      241 accatcgggc gtgataacta tatcgtcatt ttgttctaaa actttaaatg cagctctaag
      301 tgcactgcta gcaccccttg aagtgcttcc tcttacagta tcaagaccga aaagcttgat
      361 gatttttgca atttgctctc catctttatg gtgagagatc atgacatagg cttttttatt
      421 tttttgccta taatgtctaa acgcaaaagg cataagtgct aattttccat gccaaaaaag
      481 tatcacacca gctttacggt caactttttc acctttatag tgctttttac agcttaaaaa
      541 aataagccat tgcaagatga aaattatata tgttaagcaa tggattttaa acgatttccc
      601 catataaaac catacgcttt gcattagtta tttttacttc tttaaattgc cctaaaagtt
      661 cttcgctacc ttcaacttga actaaaaagt tattatctgt tcttccagca atgctattgc
      721 ctgctcttaa ttcttcaaat aaaactttaa aagttttatt ttcttgtttt tttacaattt
      781 tatctaaaat ttcactatga cgattttgta aggtgctaag tcttcttgaa gctatttctt
      841 catcgatttg attaggcatg gttgcggctt ttgttaaagg gcgtttggag tatttaaaag
      901 aaaaaatttg ttcaaaacgc actttttcca aaacatctac agtctcttca aaatcttttt
      961 cactttcccc tggaaaagct acaataatgt ctgtagaaat gctaacattt ggacaaagtt
     1021 ctctaagttt taaagctcta tttaaatacc attctttagt atagccacgc ttcatagctt
     1081 ttaaaatttc acttgagccg ctttgtaaag gcatatgcat ggatttgcaa acttttggat
     1141 tattggcaaa aacttctaaa aatttatcat ccatgtgcaa aggatgtgga cttgtaaagc
     1201 gaatgcgttc caaaccttct atagtgctaa gttcttctaa aagatctgaa aagtccattt
     1261 ttttatgttc gtttctaaat cttttgccat agttattgac attttgtcct agcaagaaaa
     1321 tctctttagc gcctttttca atagcttttt gagcttcttt gtagatgatg ttaaaaggta
     1381 tggaaatttc atctcctcta gtatgtggca ctatacaata agtgcagtgt ttatcacaac
     1441 ctatggagat attaatatag gatttataaa tactatttct aaaatctgca aaagcaaatt
     1501 cactttcatc atagtctata tccacgccca taaattttgg agtttttata gcttgagtga
     1561 ttttggaaat atttcttgcc cctagaacaa aatccacata aggagcacgt ttgaaaattt
     1621 catttcccaa atgtgatgca gtgcatccac aaactcctat tttagcacct tcttttttaa
     1681 ctttttcaaa gccacccact tctgagaaaa gtttatgcac aggtttttca cgcactgaac
     1741 aggtattaat aagaataaga tctgcttctt tgatatcttc tgttagtgcg taattttctt
     1801 tttgtgttaa ttctgcgatc atatgctcag aatctctgac attcatcgca caacctaaag
     1861 tttggataaa aagtttttta gcactcaaag aatatgtacc tcatacataa aatcattatc
     1921 atcaagtccg tattttacgg ttctatgata aatgcttact cctttttttt caaaatgatt
     1981 tacaagggca atgagttgtt tgtgtgtatt atctttatca aaataaaaaa acttttgtcc
     2041 ttctttttct atagcctctt cgattttttc taggctaata tttttaggtt tttcattaat
     2101 caaagttctt gccaatttta attccatagc taaatcctta agaattttca ttttaatcta
     2161 taattttagc aaattttact tttaattaaa cttattaagg atataatttt tatctacatt
     2221 atttaaattt cccacaaaaa aggttttata aaatatggaa aagatagcag atattatcga
     2281 atctattgct aatgaaaaaa atttaaactt agagaatgta agagaaaagg tagctaccgc
     2341 tttaatcaat actgcaaaaa gaatttatgg acaagaatat gagttttttg tggatcctaa
     2401 aaatttaaat ctttatcaaa aaattaccat agtagcagat aatgacgaga gattgcaaaa
     2461 taaaagtgag agttttatcg cgttaagtaa ggcaaaatca gaagctccag atgttgaaat
     2521 aggagatgaa ttaacctatg aatgttcttt ggaaaattta ggaagaactg cggtaaatac
     2581 cttgcataaa gaacttgaat atcatataca aaaattatta gaacaaacta tttttgaaaa
     2641 gtataaaaac aaagtagggc aaatggtttt tggtacagtt gttagagtgg ataatgaaga
     2701 aaatactttt attgaaatag atgaattaag agctttttta ccgagaaaaa atcgcattaa
     2761 aggggaaaag tttaaaatag gtgatgtggt aaaagctgtg atacgccgtg tttatacaga
     2821 taagggtatt aaaatcgagc ttagtcgtac aagtcctaaa tttttagaat gtttacttga
     2881 agctgaggtt ccagaaatca aagatggtta tgtcaatatt ataggatgtg ctagaattcc
     2941 aggtgaaaga gcaaaaatca ttcttcaggc caatggaaca aatatcgatc ctgtaggagc
     3001 tacagtaggt gttaaaggtg taagaattaa tgcggtaagc aaagagcttc ataatgaaaa
     3061 tattgattgt atagaattta caaatgagag tgaaatttta atttctcgtg ccttggctcc
     3121 tgctattgta aattctgtaa aaattgaaga taaaaaagct attgtaagtt taaatagcga
     3181 acaaaaaagc aaagctatag gaaaaaatgg tattaatatt cgccttgctt ctatgttaag
     3241 tggttatgaa atagagctca atgaattaag ctcatcgcag ctaaataatg ccatcagcaa
     3301 tgaagaagca atgaaaaatc ttcaagattt gtttaaaatt taaaatattt gtgaattttc
     3361 acaaatattt tttataaaac cacttccaat aaaatgccgc aaagataaaa atcataccca
     3421 ataagcctgt aattagttct aaactcaagc ctatttcaaa taaaaagccc ataagcattg
     3481 aaataatagc gctaaaacta agataaatca tatctgtata agcgatcact ctaccatgat
     3541 attctttgtc ggcatttttt tgtatcatag tgtaggtgta agcccaaagc gctgaggtaa
     3601 aaaaacctgc accgattaaa cctaaaaaag aaatataaaa attaaattga gttaaagccc
     3661 aaagtataat acccaagcct tgaccaagat acatgtaaaa taaattttta tcattaataa
     3721 atttgcttaa aaccataggt cctatagcta aagaacaagc acgtactgca tttaaaaacc
     3781 ctattactaa agcagcagat aaaacttctt tatattgatg ttgcgctaaa agcgtaacca
     3841 aggtttcata agcagttaaa cctataaaag cgtgaagcaa gataagatga aaaattatct
     3901 tattgtttaa aacatagaaa aatccttctt ttatcatggt aaaaaagcga ctttgtgttt
     3961 tttgatgaaa atcaggaatg cttaatctta ctaaaaaaga aatgcctatg agtataagta
     4021 tacagtcaaa tagaaaagcg gttttaactc ctagaaaata aataaaaatt cccgcacttg
     4081 ccatacctgc tgtataagaa atcgcccaaa tgacactgtg catttcatta gcgagtttaa
     4141 gttcttgagg agttaaaatt ttggccaata aactcatttc agcttgaaaa taaatcgaag
     4201 caacacaaag tcttatgaaa attaaaataa ataaaagcca aagcatacta agacttgtga
     4261 caaaaataag acaaaaaata gaaattaatt ctatgctaat catactgagt aaaagttttt
     4321 taggtttatt tttctctact atgacgccat taataggagc aagtaaaact ccaggtaaaa
     4381 aagcaagcat agcacttgta gctgttgccc aagtaggagc attaagttcg actaaaaggg
     4441 taaaaactcc cgtttgagaa aaccatgctc caaaatatac tataaactga accgaagcta
     4501 atattctgat atttttatta ttttttaata gttcaatgta attcataagc gaaactatag
     4561 cataatttat attttaaatg ctataattat tttaattatg taaaaaacaa ggaaaaattt
     4621 tgaaaagact ggataaaaaa gaagctttag atttattaca ccatgcaagt ttaacagaac
     4681 ttggagaaat ggcttataaa agaaaattag aacttcatcc tgaaaaaatc accacttttg
     4741 ttgtggatag aaatattaat tataccaatg tttgttgtat tgattgttct ttttgcgctt
     4801 tttatcgcca tcataaagaa gatgatgctt atattttaag ctttgaagag ataggcaaaa
     4861 agatagaaga gcttgaagct atcgggggaa cacaaattct ttttcaaggc ggggtgcatc
     4921 caaaattaaa aatagaatgg tatgaagaat tagtttcttg gataaaagaa cattatccaa
     4981 atatcactgt gcatggtttt tcagcagttg agatcgctta tattgcaaaa gcatctaaaa
     5041 tttcaatcac tgaagtgtta aaaagattgc aagctaaagg tttattttct ataccaggag
     5101 caggtgctga ggtgctaagc gatagggtgc gtgatattat cgcaccaaat aaatgtgata
     5161 cagctacttg gttagaagta catcgccaag ctcataaaat tggtatgaaa agtacagcta
     5221 ctatgatgtt tggaacggtt gaaaatgatg aagaaatcat cgatcatttt gagcatttga
     5281 gaaaattaca agatgaaaca gggggattta gagcttttat tttatggagc tttcaaagtg
     5341 ataatactgc tttaatccaa aaacatccag agattatgaa acaaagttct aacaaatatt
     5401 taagactttt agctttagca agactttatt tagataattt taaaaattta caaagttctt
     5461 gggtaactca aggctcactt ataggccagc ttgctttaaa atttggggcc aatgatttag
     5521 gctcaactat gatggaagaa aatgtagtaa gtgctgcagg agcaagttat agaatgaatc
     5581 aagatgagat gataaggctg attagaagtt taggcgaaaa tccagctaaa cgcaataccg
     5641 cttatgaaat tttagaaagg ttttaatgca gtatttagag agtaggggta ttaaaatccc
     5701 ttttattttt gaaaaaaatt ctgattttcc tattgttgtt ttaaagcttg tttttagaaa
     5761 ttgtgctaga agttatgatg aaatagcagg cttagctaag atgttttcac gtattttaaa
     5821 tgaaggcgtg gatgataaat tttttaagga tttagaattt agagcgataa atttagaggc
     5881 aagtagtggt tttgaaagtt tggaaatcaa tctttcttgc ttgaaagaaa attttgattt
     5941 tgctttaaag agtttagaaa aattgctttt aaaaccaaga atagaagaaa aaactttgca
     6001 aaaattaaaa atcaatgcct taggtgagct cgcgagtaaa aatagtgatt ttgattattt
     6061 agcaaaaaat ttactcaatg ctcaaatttt taaatgtaaa gaatttcaaa gtccaaatga
     6121 tggagatgaa aaaagtatag aaactttgtc tttaaaagat ttgcaaaatt tttataaaaa
     6181 ttttatccat cttagtgatt tggttgtgat tttaggagga gatttagaag aaaaacaagc
     6241 caaggaagat cttttaaaac tcttatcaaa acttcaaata ggcaaaaaaa atactccaaa
     6301 aaaatatgag ttaggcaaaa acatcaaaga tgaaattttg gtacgcccag aaagtgaaca
     6361 agcttatatt tattttgcta cgcctttttt tgctgatttt aaagataagg atttatatct
     6421 tgcaaaaatt gccttatttg tgctagggca aggaggattt ggttcaagga ttatggaaga
     6481 aattcgtgtt aaaagaggtc ttgcatactc agcttatgct atgcttgata tgaatatgtc
     6541 tttttctaga gtttttggat atttacaaac taaaaatgaa agcgctaaag aagctaaaaa
     6601 aatcgtaaaa gagctttttg aagattttat aaaaaatggc atgactcaaa atgaacttga
     6661 tcaagctaaa aattttctca taggatcaac tcctttgcgt tatgaaagct taagcaagcg
     6721 tttatctatg tcttttaacg aattttatca aggtttaaat ttgggatatt ataaagaaga
     6781 gttaaaactt atggaaaagg ttaaacttga aaccataaat gcttatatta aaaaacatca
     6841 agagctttta aatataagtt ttgcaagcat acaaaatgaa aattaaagaa agtgattttg
     6901 aattttttaa aa
//
LOCUS       DARBBO010000083         6719 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.083, whole genome shotgun sequence.
ACCESSION   DARBBO010000083 DARBBO010000000
VERSION     DARBBO010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6719)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6719)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6719
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.083"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..220
                     /locus_tag="SB854_001391"
     CDS             <1..220
                     /locus_tag="SB854_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0957378.1"
                     /translation="SEIYERVLNELNVYEFEALLINKPILTKIAKNFLEQSQILIQEK
                     SKFLDLKKAELRKRRAQILNVRESIKED"
     gene            220..924
                     /locus_tag="SB854_001392"
     CDS             220..924
                     /locus_tag="SB854_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sel1 repeat family protein"
                     /protein_id="HEG0957379.1"
                     /translation="MRIFLTLFLFFNSLLALSELEEGLKLYEANKFDKAYEIFKNLCE
                     KDISKACFSLAFMHESAKGVSKDLNQVYKFYDKACKLGLANACSNMALLLQNQGYKNE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGEACYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            1060..1788
                     /locus_tag="SB854_001393"
     CDS             1060..1788
                     /locus_tag="SB854_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HEG0957380.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAEFTHSHQA
                     SQGKSNKVRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFIEGKAEQGYQTPMQRKDIFLEGVRALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMGLADMEN"
     gene            1790..3511
                     /locus_tag="SB854_001394"
     CDS             1790..3511
                     /locus_tag="SB854_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HEG0957381.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNFIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     MGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSNIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAQLPAGAPTWGAEFKKALNYNFTRAITVAGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            3800..3992
                     /locus_tag="SB854_001395"
                     /pseudo
     CDS             3800..3992
                     /locus_tag="SB854_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857465.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(4070..4753)
                     /locus_tag="SB854_001396"
     CDS             complement(4070..4753)
                     /locus_tag="SB854_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957382.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDFKNLVTRTYQQNSQN
                     NDIKFSIAS"
     gene            4861..5223
                     /locus_tag="SB854_001397"
     CDS             4861..5223
                     /locus_tag="SB854_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEG0957383.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILFCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQRETIK
                     LDLPKFEEFVKFLNSKIF"
     gene            5297..5869
                     /locus_tag="SB854_001398"
     CDS             5297..5869
                     /locus_tag="SB854_001398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HEG0957384.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDVTIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDAEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFATSTSTITLSDDINLNIEVEANEK"
     gene            complement(5874..>6719)
                     /locus_tag="SB854_001399"
     CDS             complement(5874..>6719)
                     /locus_tag="SB854_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957385.1"
                     /translation="LGAKLPYFYTSFFQANLFVALFLPMIFTLFCVGKHHVLILNKKN
                     IASITTLIFIGILSIILPRNTTFNSAGLEFHFIALDFFKPVSELGFLFFLVGLILIFI
                     KTFKTKEYYLLIAFFTAYFQFLFQEGAGIRYFEFASLVFCFYLLNHAYRLAFFDTLTK
                     LPNEKSLTRFTKGKNNYIIALLHFNELKDTKESYTKLILKQIAKILKRFRAKIFIVEN
                     DFILIFNDKNQALNHLAFLESTLKNTEFNLENENFKPDFKLIWQESEENLDKNLQSLR
                     ARLLD"
BASE COUNT         2388 a          856 c         1202 g         2273 t
ORIGIN      
        1 aagtgaaatt tatgaaagag ttttaaatga attaaatgtt tatgagtttg aagctttgct
       61 tattaataaa cctattttga caaaaattgc aaaaaatttt ttagaacaaa gtcaaatttt
      121 aatccaagaa aaaagtaaat ttttagatct taaaaaagca gaacttcgaa aaagaagagc
      181 acagatttta aatgttagag aaagtataaa ggaagattaa tgagaatatt tttaacttta
      241 tttttatttt ttaattcatt acttgcatta agtgagctag aagagggttt aaaactttac
      301 gaggcaaata aatttgataa agcttatgaa atttttaaga atctttgtga aaaagatatt
      361 tctaaagctt gtttttcttt agcttttatg catgaaagtg ctaagggcgt gagtaaggat
      421 ttaaatcaag tttataaatt ttatgataaa gcttgcaaat taggtttagc aaatgcgtgt
      481 tctaatatgg ctttgctttt gcaaaatcaa ggttataaaa atgaagctct tttggctttt
      541 aataaagctt gcactttagg agaatcgtta agttgtaata atatagcttt attttatgaa
      601 aaagaaaaag atggacaaat ggcctcaagt ttttataaaa gatcttgtga cttaaaaaat
      661 gcaagagctt gttatcagtt aggatcttta tatgataaag gagagcttgt taaagcaagt
      721 gtaaaatctg ctcttgcttt ttattctaaa tcttgcactt taggttttgg tgaggcttgt
      781 tatttgctag gacgctataa tcaactagaa aaacaagatc taacaaaggc aaaaagatat
      841 tttggtatgg cttgtgatca aaaacatcaa gaagcttgtg cagcttataa agaacttaat
      901 tctaaagata tagagcttta ttaaaagttc tattttcatt actttcaaag atatacttaa
      961 ataaaattaa gaataacaca aaatttatcg ctttttaaag ttaaatttat attaatagga
     1021 ctaatatagt cttgtttaaa ttattatcaa ggagaagtaa tgcaagacaa tattattgat
     1081 cgcagaagct tttttaaact agggcttcta ggtggttctg tagtagcagc tagcactata
     1141 ggtggcggtg ctgttttaaa ggcagcagaa tttacgcatt cgcatcaagc ttcacaaggg
     1201 aaatcaaata aagttagagg tagaatgttt tttcaaactc aaactgaatt tgatacctta
     1261 agtgcagcct gtgaaagaat ttatcctaaa gatgagcaag gagaaggagc tataggttta
     1321 ggcgtgcctt attttatcga taatcagcta gctagtgctt atggttataa tgatagagaa
     1381 tatatgcaag gacctttcat tgagggtaaa gctgaacaag gctatcaaac tcctatgcaa
     1441 cgcaaagata tttttttaga aggtgtgcgt gctcttgaag aaaatgctca aaagcgttat
     1501 aaaaaatctt tttctttgct taaaggtgga gatcaggata aaattttaag tgattttgaa
     1561 aaaggaaaaa ttcaaactac aggttttaaa tcttcttatt ttttcacact tttaagagat
     1621 atgacagtag ctggagtttt agctgatcca atttatggcg gaaatgataa taaaaatggt
     1681 tggagaatga tgcaatatcc aggcgcacaa atgagctatg tggataaaat tgcaagtgat
     1741 gaatttttta acattgaacc tatgggttta gcagatatgg agaattaaaa tggctgaagt
     1801 attaaaaaaa gtagatgtag taacagttgg agcaggatgg actggaggta tagtggccgc
     1861 agagcttact aaagcaggtt tgaatgtact tagtttagaa cgcggacata tgcaaagtac
     1921 tgaaaatttt aattttatcc atgatgagtg gagatatggg attaattatg gtttgatgca
     1981 agattgctca aaagacactg tgacttttcg ccatgatcct agtggtttag ccttacctta
     2041 tcgtaaaatg ggttcgtttt tattgggtaa taatgttggc ggtgcagggg tgcattggaa
     2101 tggttggact tttaggttta tgccttatga ctttgaaatt caaaccctaa gcaaacaaag
     2161 atatggtaat aaattaggta atgattatac cttgcaagat tggggcgtga cttataagga
     2221 tatggagcct tattatgata gatttgaaaa aacctgtggg gtatcaggtg agccaaatcc
     2281 tttagcggaa aaaatgggag cttttagatc cagtccttat ccacaagaac ctcttgaaaa
     2341 tactaaaatg cttaaacgat ttgaaagtgc agcaaaaagt tcaaatttac acacttatcg
     2401 tttgccagct tcaaattcta aaggtggcta tacaaaccct gatggtcaag atttagctcc
     2461 ttgtcaatac tgtgcgtatt gtgagcgttt tggttgtgag tatggcgcaa aagcaagtcc
     2521 tttaaacaca gtaattccaa aggctatgag cacaggtaaa tacactatac gcacttatag
     2581 caatgtaacg caaattctta aaaaagacgg aaaagtaatg ggggtaaaat ttgtcgatac
     2641 tagaacgatg aaagagtata ttcaacctgc tgatatagtt gtgcttacaa gttatatgtt
     2701 taacaatgct aagcttttaa tggtaagcaa cataggtgag caatacgatc caaaaacagg
     2761 taaaggaact ttaggtagaa attattgtta tcaaatgaac atgggtacaa cagctttctt
     2821 tgatgagcaa tttaacacct tcatgggttc aggtgcttta ggaactacga gtgatgattt
     2881 taacggagat aattttgatc attctaagga aaaattcctt catggagcta tgatttatag
     2941 cgttcagctt ggaactcgcc ctatacaatc agcccaactt ccagcaggag ctccaacttg
     3001 gggtgctgaa tttaaaaaag cattaaacta taatttcaca agagctatta ccgtagcagg
     3061 acaaggtgct tctttgcctc ataagaataa ttatttaagt cttgatccaa cttataaaga
     3121 tgcttttggt atgccacttt tacgcttaac ttataatttc accgatcaag atagagcttt
     3181 gcataaattt attacagata aaacagctga ggtagcaaaa agaatgcaag gagtaaaatc
     3241 aatcaaaaaa ggcgcttatc ttaaggatta tagcgttgtg ccttatcaat ctactcataa
     3301 cacaggtgga acaacaatgg gtgcagatag agaaactagt gtggttaata cttatttaca
     3361 acactgggat gcggataatc tttttgttgt aggagcagga aatttccaac acaatagtgg
     3421 atataatcca actgatactg tgggagcttt ggcttatcgc tgtgctgaag gtattttaaa
     3481 atatcataaa agtggaaaaa gcttagcttg ataataactt gagagttttt gaaaactctc
     3541 aagattataa atttttaatt ttcttccgat atagtatata atatcaagga aggcaaaaat
     3601 gattaatggt ataaattctt attcaaacta caattataca aaaaggcaaa tgtagtctgc
     3661 tcttggaggg tggtatgcaa gatgattact ttaagttctt ttaatagata ttttggaaat
     3721 aatcctctgc agacacttac taaaattaga gatgaaagta ttgaaaatgc aaaaatttaa
     3781 attataaaaa ggataaaaaa tgttaaatat tttacatgca aattcaagtc atcgtttcca
     3841 taaatgtatg cctaaggaag ttcatcaaat atatgatact ttaaagctta tggaacagca
     3901 agaaggtaca aaaaaaagta gaagccaaaa aagaagagca aagtaattct acaaatacag
     3961 ataaagcaga taataaaaaa ataaattttt agacatgtcc gtttagtttt aaaacaaagc
     4021 tttatttata aggaagattg gcataatttt tttatttaaa ttaagaattt taagatgcga
     4081 tgctgaattt aatgtcgtta ttttgtgaat tttgttgata agttctagtg acaagatttt
     4141 taaagtcttt atcaaaattt gaatttttat cgttgttttt tgaatcttta tctgtttttt
     4201 ctaagctatt ttctgaattt ttgtcatctt tttctttggc ttcttcggct ttaagtttca
     4261 ttgcttcagc tcttgcttca aattccattt ttgtagcatt tgctgcaact ttatagtctt
     4321 gtgggctagg atcagcagga gccatagctg ctgctgcgat ttgtcttgca ttggctatag
     4381 tttcttctgg tgtgtttcct ttttgcatgc tgataggaac ttcgcccgct gtagcataca
     4441 tttgattatc agggcctctt gtgtaagtaa aacttgcagc acctgctaag ccgccacccg
     4501 ctgcttgatg tgcagcttca tgagccttta catttctatc gatactttgg agttcgcgaa
     4561 cttgagctac ttctttttgg cttagctcta cgccattaac catttgggtt tgttcgccat
     4621 ttttttcttt atcatcttta ttttcactaa gatttttttc atctttttga gtggaatcag
     4681 attgatttgt tttatcaaaa gaaggtttgc tagagtagta atcataagag ttataacttg
     4741 aactaatttg catttatcct tctttttgtt ttttaaattt ttaggaattt taacgcattt
     4801 tgacttaaaa atttgataaa ttttgtaaaa taatcataaa tacaatttca aaggaatgta
     4861 atgatttatg aaaatgattt gatttatata gagaaagagg aggctcaagt gccttggctt
     4921 aaaattttta ctaaagaaat ttataaagaa tttagcgatt gtcctttaga gttgcaaaag
     4981 gaactttttg aaaaaatttt attttgtgaa aaggctatga tagaatttta caaacctgaa
     5041 aaaatcaata tcgcctcttt tgcaaattat gtgccaaggg tgcattttca tgttatggca
     5101 agatttaaag aagatgcgtt ttttccagag tgtatgtggg gaaaacagca aagagaaaca
     5161 ataaagcttg atttgcctaa atttgaagaa tttgtaaaat ttttaaatag taaaattttt
     5221 tgatttttat taatgatttg ttatgtttta tctaataaaa tttttatatt gaaaattact
     5281 ataaaaaagg aaaaaaatga aaaaagtttt attgagttca ttggttgcgg tgtctttgtt
     5341 aagcacaggt ttgtttgcta aagaatatac tttagataaa gcacatacag atgtaggttt
     5401 taaaatcaaa catttacaaa ttagcaatgt aaaaggaaat ttcaaagatt attctgcggt
     5461 gattgatttt gatcctgcga gtgctgaatt taaaaagctt gatgtaacta taaaaatcgc
     5521 atctgtaaat acagaaaatc aaacaagaga taatcactta caacaagatg attttttcaa
     5581 agcaaaaaaa tatcctgata tgacttttac aatgaaaaaa tatgaaaaaa tcgataatga
     5641 aaaaggcaaa atgacaggaa ctttaactat agctggagtt tctaaagata tcgttttaga
     5701 tgctgaaatc ggcggtgtag ctaaaggcaa agatggaaaa gaaaaaatag gattttcttt
     5761 aaatggaaaa atcaaacgct ctgattttaa atttgcaaca agtacttcaa ctattacttt
     5821 aagtgatgat attaatttaa atatcgaagt tgaagcgaac gaaaaataat tttttagtct
     5881 aagagtcttg ctcttagact ttgtaaattt ttatccaaat tttcttcact ttcttgccaa
     5941 atcaatttaa aatccggttt aaaattttca ttttctaaat taaattccgt gtttttcaag
     6001 gtggattcta aaaaagcaag atgatttaaa gcttgatttt tatcattaaa aattaaaata
     6061 aaatcatttt ctacgataaa aatttttgct ctaaagcgtt ttaaaatttt tgcaatttgt
     6121 tttaaaatga gtttggtata gctttctttg gtatctttta gttcattaaa atgaagcaag
     6181 gcaatgatat agttgttttt tccttttgta aagcgtgtaa ggcttttttc attgggtagc
     6241 tttgttaagg tgtcaaaaaa agctaaccta taagcgtgat ttaaaagata aaaacaaaaa
     6301 accaaacttg caaattcaaa atatcttatt cctgctcctt cttggaataa aaattgaaaa
     6361 tacgcagtaa aaaatgcgat aagaagataa tattctttag ttttaaaggt tttgataaaa
     6421 atgagtatta agccgactaa aaaaaataaa aatcctaatt cactcacagg tttaaaaaaa
     6481 tctaatgcaa taaaatgaaa ttctaaacca gcactattaa aagtagtatt tctaggtaaa
     6541 atgatactta aaatgcctat aaaaataagg gttgtaattg aagcgatatt ttttttattt
     6601 aaaattaaaa catgatgttt tccaacgcaa aatagagtaa aaatcatagg taaaaataaa
     6661 gctacaaata aattagcttg aaaaaaactt gtataaaaat aaggcaactt ggctcctaa
//
LOCUS       DARBBO010000084         6716 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.084, whole genome shotgun sequence.
ACCESSION   DARBBO010000084 DARBBO010000000
VERSION     DARBBO010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6716
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.084"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..1028
                     /locus_tag="SB854_001400"
     CDS             <1..1028
                     /locus_tag="SB854_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957386.1"
                     /translation="KNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLN
                     AMFRKNHNLDFNDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDE
                     QVVVLEGFEFINAKARELIFSKKDKNMARISYLVSRYKEKAFILELSKDYEDILLINK
                     ELNLLKLSLPKHSKELYEEIKKDEIGARLLENFSKEFPLLDENFELQNNFYSLLGLVG
                     RVLNLGKNLQESANELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGV
                     DSANIAYGAVESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQL
                     SDAPLRV"
     gene            1009..3198
                     /gene="hypF"
                     /locus_tag="SB854_001401"
     CDS             1009..3198
                     /gene="hypF"
                     /locus_tag="SB854_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HEG0957387.1"
                     /translation="MRHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISISNYENFSITPSLENTKSTPML
                     SDFAFCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILS
                     IKGIGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSAKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGSLVATSANLSGESI
                     IKDEFNLCKKLDKVFDFYLDYDREIINASDDSIAQVVNGETMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKDF
                     LAKIPKIKLKNLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLNLEK"
     gene            3276..4019
                     /gene="hypB"
                     /locus_tag="SB854_001402"
     CDS             3276..4019
                     /gene="hypB"
                     /locus_tag="SB854_001402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HEG0957388.1"
                     /translation="MCKDCGCSINSSHTHGHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     ALRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKVDLAHHFDFDIKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            4019..4300
                     /locus_tag="SB854_001403"
     CDS             4019..4300
                     /locus_tag="SB854_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HEG0957389.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            4284..5375
                     /gene="hypD"
                     /locus_tag="SB854_001404"
     CDS             4284..5375
                     /gene="hypD"
                     /locus_tag="SB854_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HEG0957390.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKVIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNVKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNA"
     gene            5372..6346
                     /gene="hypE"
                     /locus_tag="SB854_001405"
     CDS             5372..6346
                     /gene="hypE"
                     /locus_tag="SB854_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HEG0957391.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEADIKSDCKALNKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDELKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            6346..6690
                     /gene="hypA"
                     /locus_tag="SB854_001406"
     CDS             6346..6690
                     /gene="hypA"
                     /locus_tag="SB854_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HEG0957392.1"
                     /translation="MHELSIVESLIELCEENALNNKAYNVQEIYVKIGRLSGIEVDLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKIIQ
                     GEDLHLMRLVMK"
BASE COUNT         2358 a          812 c         1321 g         2225 t
ORIGIN      
        1 ttaagaacga atttatagga gattttttgc ttccttgtga tattaaagct ataaattcag
       61 tttttgtttg ttcgaatgaa aatttaaaac ttcttgcaag cttggaaaaa cctttgatga
      121 aactaaggct taatgctatg tttagaaaaa atcacaatct tgattttaat gattttaaaa
      181 tcagacttgc tagagatttg ttttgctttg ctttaggttt gaaacttttt gaaaatgagt
      241 ataaattttt aagcgtaaaa aagatagaag aatatcaaaa agatttttat atcagtgctt
      301 tagatgagca agtggtggtt ttggaaggct ttgaatttat caatgctaag gcaagagagc
      361 ttattttttc taaaaaagat aaaaatatgg caagaatttc ttatcttgta agccgttata
      421 aagaaaaggc ttttatttta gagcttagta aggattatga agatatttta cttatcaata
      481 aagagcttaa tttgcttaaa ctttccttgc caaagcacag caaagagctt tatgaagaga
      541 ttaaaaaaga tgaaattggt gcaaggcttt tagaaaattt tagcaaggaa tttcctcttt
      601 tagatgaaaa ttttgaactt caaaataatt tttattcctt gcttggcttg gtaggaagag
      661 tgctaaattt gggtaaaaat ttacaagaga gtgctaatga gcttttaaaa atcgctgatg
      721 agtcaaaaat gcctcgtgga gtaaagattg attatcgttt gaaagaagat aaaagttttg
      781 attatacaag aactttaaga tctgctatga gttttatgtt agcaggtgta gatagtgcta
      841 atatcgctta tggagcggtt gagagtttgg cttatttctt gcgtgatact tatgatgaat
      901 taagagagaa aaagcaaagt gatttagcac ttataagtgg atctttgttt gaacataaat
      961 ctttacttaa aaatacttta aaacatctta aaaattgtca gttaagcgat gcgccactta
     1021 gggtataaga tcaaaatttc aggtctagtt caaggggtgg gttttcgccc cttagtttat
     1081 gaactagctt tgaaatcaaa gctttttgga gaagtaagaa atgatggttt tgggatagaa
     1141 atcatccttg cttgcactca aaaagaatgt gaaaatttca tagaaaattt aaaaaatcat
     1201 cttccacctt tagcaagaat agatcagctt ataatcacgc aaatttcaat ttcaaactat
     1261 gagaatttta gcattactcc ttctttagag aatacaaaaa gcacgcctat gttaagcgat
     1321 tttgcgtttt gtaaggagtg taaaaaagaa ttttttgatg aaaaaaatcc acgcttttta
     1381 tatcctttta tcacttgcac acattgtggg ccacgcttta gtattataaa aagtcttcct
     1441 tatgatagat ttaatacctc tatgcaagaa ttattgatgt gtgagttttg taaaagcgaa
     1501 tacgaagatc ctaaaaatag gcgttttcat gcccagccta ttagttgtcc taaatgcaaa
     1561 atcaatgttt ttcttaaaaa tccaaagggt gaaattttag ccaaagatca agaagctttt
     1621 atacaaagtg cgaagttttt aaaggaaggt aaaattttat ccataaaagg cataggtggt
     1681 tttcatctca tgtgtgatgc gtttaatgaa gaagctttaa aaactctaag acttagaaaa
     1741 aatcgcccta aaaaaccctt tgctttgatg tgtaaagatt tacaaagtgc taaagaactt
     1801 gcctttatag atgaaaaaga agaagctttg cttggtgggg ttttagctcc tattgtgatt
     1861 ttaaaggcaa aaaaagcctt ttctttaatc gctcctgatg ttgataaaat cggtattatg
     1921 ttagcttata cacctttaca tcttttgctt tttgagtatt ttaaaggaag ccttgtagca
     1981 acgagtgcaa atttaagcgg agaaagtatt attaaagatg agtttaattt gtgtaaaaaa
     2041 cttgataaag tttttgattt ttatttggat tatgataggg aaattatcaa tgcaagtgat
     2101 gacagcatag ctcaagtggt aaatggtgaa actatgtttt tgcgtacttc aaggggttta
     2161 aatccttttt atttggaaag aaattttaat aaaaaaggca cttttttagc tttaggtgcg
     2221 gaacttaaaa atgaatttgt gattttttat gaaaataaac ttttaatttc tccttatata
     2281 ggggatttga aaagtcttga tgtgcatgag agatttttta aacttttaga attttttaaa
     2341 caaaattatg atttgaaatt tgatgcgatt ttgtgcgata aacacccgca ttttagctat
     2401 gcaaaagaat ttgaagaaag gattaaaatt tctcatcatt atgcgcattt ttgtgcggct
     2461 tattttgaat acgaagaaaa ttttgcaaaa gatgaaaagg ctttagcttt tatttgtgat
     2521 ggaacaggtt atggcgaaga tggtaaaatt tggggtggag aagtttttgt aggaaattta
     2581 aaagaatatg aaagaattgc acattttgaa aatttcactc ttataaatag tgatattaaa
     2641 aatatacaaa atttagcctt aagtcttatt tttcattatg atttagaaga taaggctaag
     2701 gattttttag caaaaattcc aaaaattaaa cttaaaaatc ttaaaaaaat ttattctcat
     2761 tctaacttac aaacaagttc tttaggacgc attatcgatg cttttggaag tattgttttt
     2821 aacttagaaa aaagttctta tgaagctcaa gttggcttaa tgtgtgaagc tttttatgat
     2881 aaaaatcttg atttttctta taagcttttt gtagaaaaag ggcaggttaa ttttaaaaat
     2941 ttaatcctag gggctttgca agatgaaaaa actaaggcga ttacaggtat gtttaatgcc
     3001 ttggcaaatt ttatcataga ttttagcaaa gattatgatt taaaagtgct tttaagcgga
     3061 ggggtttttc aaaacaaaac cttgcttgaa attttaaaag ctaaaaattt tgattttttt
     3121 atacctttaa agtacccttg taatgatagc tccatagcct taggacaaat ggtgcatttt
     3181 ttaaatttag aaaaataaag caaatattct aaaaactcat aattttttaa tgcttttaag
     3241 gttaaaatga aacaaaaaat atataaggaa agaaaatgtg taaagattgc ggctgctcta
     3301 taaattcaag ccatacgcat ggtcatcatc acgaccatca tcatgaaaat ccaagtttaa
     3361 aagaaagcaa aaccatagaa gtgatttcta aaattttaag caaaaatgat gaagaagcta
     3421 agcacaatag agcgcatttt aatgaagcta acacgctttg tattaattta atgagttctc
     3481 caggtagtgg aaaaaccacg cttttagaaa gcacgattaa ggctttgaaa aatgaactta
     3541 aaattgctgt gattgaaggg gatttagaaa ccaataatga cgctctaagg gtaaaaaatg
     3601 ccggagcttt ggcgtatcaa atcactacag gacaaagctg tcatttggac gcttttatgg
     3661 tgcatgaggc tttgcatcat ttagccattg atgatgtgga tttgcttttt atagaaaatg
     3721 ttggaaattt ggtttgtcct gcaagttatg atttaggaga gcatttaaat gtggttttgc
     3781 tttctgttac cgaaggaagc gataaaccgc aaaaatatcc tgtgatgttt aaaaaggctg
     3841 atatagtttt aatcacaaag gtagatttgg cccatcattt tgatttcgat attaaagagg
     3901 cgactaggtt gattaaagaa ttaaatccta gagcagatat tatcaccctt gatgcaaaaa
     3961 atggcaccaa tatggagctt tggtataagg tgcttaaact taaaaaggag cttttttaat
     4021 gtgtttgtct ataccttctg aaattttaga aatcgatgag ttaaacaatg ctttagtaca
     4081 aactttaggc gtgaaaagaa aagttaattt ggatttgatt gatgaacctt taaaacaagg
     4141 cgattatgta ttaatccatg taggcgttgc tatggaaaaa atcgacaaag aagctgcact
     4201 agaaagcatt aaaacctatc aagaaatagt agaaaaaatg aatagtggag agataaaaag
     4261 tgatgaggga gatttgggtt taaatgaatt tcatcgatga atttagagat aaagaaagca
     4321 ttttagcttt aaaaaaactc atagaacaag aacttaaaaa tcctatcaat atcatggaaa
     4381 tttgcggtgg gcatacgcat agtatcatga aatatgcttt gccttctatt ttgccaaagg
     4441 aaattaactt tatccatggg ccaggatgtc ctgtttgtgt tatgccaaga gttcgcattg
     4501 atacagctat caagttagcc tccatgaaag atacgatttt ttgtacttta ggggatcttt
     4561 taagggtgcc tggaagtgaa atttctttac tggatttaag agctaaaggg gctgatgtta
     4621 gagcgcttta ttctccgctt gaggttttgg aaattgctaa gcaaaattta aacaaaaata
     4681 tcatcttttt tgctataggt tttgaaacta ctacgcctat gagtgcttta cttcttcaaa
     4741 aggttataga agaaaaaata aataatgtct tttttcatat caatcatatc acagttccag
     4801 cacctgtaga agcgatcatg aatgatgaaa atgtaaaaat caatgctttt ttaggtcctt
     4861 ctcatgtgag tgtgataaca ggttatggta tttatgagcc tttagcagca aaatttaaaa
     4921 cccctatagc ggtgagtggt tttgagccag ttgatatttt agaaagtgtg ttaaatatca
     4981 taaaacaaag caatgaaggc acttttaaag tgtataatca atacaaaaga gccgtaagca
     5041 aagaaggcaa tgttaaagca caaaatttag taaaaaaata ctttagggtg tgtgattttg
     5101 aatttcgtgg cttaggactt attaaagatg gaggcttgga gttaaaagaa gaatttagcg
     5161 cttacgatgc gagtaaaaaa tttgattgta cggtgcaaag taaaaatgaa agcaaagcct
     5221 gtatttgtgg gcaaatttta agaggtttgg ccaagcctta tgattgtaaa gtttttggca
     5281 aggcttgtac gccaagaagt cctataggaa gttgtatggt ttctggcgag ggtgcttgtg
     5341 cggcgtatta taaatactca aaggtgaatg catgaaaaat atttccttag cccacggagg
     5401 cggtggagaa gagatgaatg agcttttaac taagcttttt aagatctttg ataatgaaat
     5461 tttaaacgca aataatgatg cagcgatttt gggaaatttg gctttaagca cggattcttt
     5521 tgttttaagt ccgatttttt tagatgaaga ggttaatata ggtaaacttt gtgtttgtgg
     5581 ttctattaat gatgttttga tggtgggtgc taagccaaaa tatctaagct tagggcttat
     5641 cttagaagaa ggttttgagc tagaaaaatt agaacgtatt ttaaaaagca ttaaagaaga
     5701 atgtgaaaaa tgtggagtta tgttagtttg tggcgatact aaagttgttc ctaagggtaa
     5761 agcagatgaa atttatatca acactacagc cttaggtgaa attatttcta aaaaagaaag
     5821 taaaaatatc aaagcagggc ttagcatact tctttcaggc gatataggaa ggcatggagc
     5881 tagtgtttta atcaaaagaa atgagctaga agctgatatt aaaagtgatt gcaaggcttt
     5941 gaataaagag gttttagagc ttttagaaaa agatataaag gttgtagcaa tgagagatgc
     6001 tactcgcggg gggcttagtg cggttttaaa tgagtgggca aagcaaagtg gaaatgatct
     6061 tttgatcttt gaagaaaaaa tcatcgttca agatgaggtt ttaggacttt gcgagctttt
     6121 tggttacgaa gcgtatgagc ttgcaaatga aggcactttt atactttgtg tggaaaaaga
     6181 agatgagtta aaagccttgg aaattctaaa aaaatacaat gtaaatgcga gtattatagg
     6241 agaagtttta gaagagaaaa aagcacgcgt gatcttacaa aacgcttatg gagcaaaacg
     6301 ctttttagaa agtcctaaag gcgaactttt accaagaatt tgctaatgca cgaattaagt
     6361 atagtagaat ctttaatcga actttgcgaa gaaaatgcct taaacaataa ggcttacaat
     6421 gtgcaagaaa tttatgtaaa aatcgggcgt ttaagcggta tagaagtgga tctttttaag
     6481 cgttgttttg aaacttttaa agaaaactca aatatttgca aaaatgctaa actttttata
     6541 gagcttgctc cgcttgaaat tttatgctta aaatgcgatc aaacaagtat tttagaagaa
     6601 aatgttttta agtgtcctaa atgtcaaagt atagaatata aaatcataca aggtgaggac
     6661 ttacatctta tgcgacttgt gatgaaataa tatatttggc gtttttgtta caatag
//
LOCUS       DARBBO010000085         6669 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.085, whole genome shotgun sequence.
ACCESSION   DARBBO010000085 DARBBO010000000
VERSION     DARBBO010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6669)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6669)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6669
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.085"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            57..1364
                     /locus_tag="SB854_001407"
     CDS             57..1364
                     /locus_tag="SB854_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HEG0957393.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALIAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSASLNDVTNTMYFAAICMIAGLFLALFVFYRKSREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
     gene            1498..5988
                     /gene="gltB"
                     /locus_tag="SB854_001408"
     CDS             1498..5988
                     /gene="gltB"
                     /locus_tag="SB854_001408"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HEG0957394.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKPSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHITYTDSKKAKDILEKFDKKDFFKVMPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     QK"
     gene            5998..>6669
                     /locus_tag="SB854_001409"
     CDS             5998..>6669
                     /locus_tag="SB854_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HEG0957395.1"
                     /translation="MAGFQSPITINEAMQRIKNNEYLLPAFQREYVWEPWQIEELFDS
                     LIRGYPISSMLFWKVKDESKTAWKFYRFLEYYRESYHTHNDYFNTSNHKDFYAILDGQ
                     QRLTSLYFALFGNYDIHRSYNKWENNDRYFKICHFYFNLTQSKKPENENIEYEFLWLD
                     KLETKEQNIYIDKYQQKWFKCQYLYQYDSGRVRKIAKEFNLNENEEDRLDLLHQKIFD
                     KNLINF"
BASE COUNT         2272 a          884 c         1300 g         2213 t
ORIGIN      
        1 ttattacatt ttaactaagt tttttctaca attaaatttt taaaattatt taaggaatga
       61 ttttgacttt acttactaat cctatcatta tcagtgttgt tttgatgact ttactttgtt
      121 tgtttcgttt taatgtgctt ttgagtcttt tgatctcagc tcttattgca ggtgtatttt
      181 ctcatcttga actcgtagat actatgaata tacttataag cggaatgaaa gaaaatttaa
      241 aaacagctct tagctatata cttttagggg ccattgccgc agcgatttca aagacaaatt
      301 taactgcata tttgattaag atagtaagtc attttatatc tcataaaaaa tatttattgc
      361 ttttgtctat agctttgatt tcttgttttt ctcaaaattt aattcctatt catgtagctt
      421 ttataccttt gttgattcca cctcttttaa gtctttttaa taaacttaaa atcgatcgta
      481 gagcggttgc ttgtgcttta acttttggac ttactacgcc ttatatggtt ttgccagtag
      541 gctttggact tacttttcaa gatcttttaa aagataattt aaatgcaaat aatgtaagtg
      601 catctttaaa tgatgttaca aatactatgt atttcgctgc tatttgtatg atagcaggac
      661 tttttctagc gctttttgtg ttttatcgta agtcaagaga gtatcaagaa gtagaaattg
      721 ctaaagtgga tttagaaaat cttgaaatga cgcgtaaaga atggggtgtt ttagctgggc
      781 ttgttttaac tttaattttg caaattttga ctatgaattt acctttatca gggcttttgg
      841 gttttgtttt aatggttatt ttgggtggag ttgaattttc aaaagtcaat gaagtttttg
      901 atgatgggct taaaatgatg ggttttatag cttttgttat ccttgttgct gcaggatatg
      961 gagaagtttt aaaagaaagt ggatcagtag tagatcttgt aaattcagtc gttccttgga
     1021 tggagcaaag taaattttta gcagtatttt tcatgctttt aataggactt atcatcacta
     1081 tgggtatagg tacttctttt ggaactatac ctatcatagc tacgcttttt tgtcctattt
     1141 gtttggaact tggttttagt acagcactta ttatatttat cttaggagta gcaggagctt
     1201 taggagatgc aggaagtcca gccagtgaaa caaccatggg aactactgta ggattaaatg
     1261 ctgataaaca acacgatcac attaaagata cttgcatacc aacttttatt ttttataatg
     1321 gtccattatt gattttgggt agtattatcg ccatgttttt ataatttttg caaatctatc
     1381 aaaatatttt ttaatttatt tatttttaag ataaaaatta tatcgatttt aaaaaaatgt
     1441 atgctataat ccttataaag ctgacaaaat ttaaatcagt cttataagga gagcaaaatg
     1501 gatttagaaa atatcctaga aaataatcaa agcataggtt tatatcaccc aaagaacgaa
     1561 cacgatgcct gtggtatcgc tgcagttgct aatatacgcg gtattgcttc ttataaggtt
     1621 atttgtgatg ctttagaaat tttgatgaat cttgaacacc gaggtggtgc aggagctgaa
     1681 gaaaattcag gtgatggggc ggggatttta atccaaattc cacatgattt ttttaaaact
     1741 caagaattgg gttttgaact tcctaaaaag ggtgattatg ctgtagcaca gatgttttta
     1801 tcacccaata ctgatgcaaa agaagaagca aaagaaatat ttttacaagg tttaaaggat
     1861 aaaaaacttg aatttttagg ttttagagaa gtgcctttta atcctagcga tataggtgca
     1921 agtgctttaa aagctatgcc ttatttttta caagcctttg tgaaaaaacc aagtaaaata
     1981 agtgcaggac ttgagtttga aagagtgctt tatagtacgc gtcgacttat agaaaaaaga
     2041 gctattaatg tgccaaaatt ttatttttca agtttttctt cacgcaccat agtttataaa
     2101 ggaatgcttc tttcaactca attgagcgat ttttatcttg attttaaaga tgtcaatatg
     2161 aaatcagcca tcgctttggt gcattctcgc ttttcgacta ataccttccc aagttgggaa
     2221 agagcccatc caaaccgtta tatggtgcat aatggagaga ttaataccat acgcggaaat
     2281 gttgatagca taagagctag agaaggcttg atgcaaagtg agtattttga aaatttagat
     2341 gaaatttttc ctatcatagc taagcctagc agtgattctg caatgtttga taatacttta
     2401 gaatttttag ctctaaatgg tcgcacttta gaagaagctt ttatgatgat ggtgccagaa
     2461 ccttggcata aaaatgaaaa tatggaaagc aaaaagcgtg ctttttatga atatcattct
     2521 ttattgatgg agccttggga tggacctgct gctatagttt ttactgatgg agtgattatg
     2581 ggggcgagtt tggatagaaa tggttttcgt ccttcaaggt attatcttac aaaagatgat
     2641 atgctcatac tttcaagtga aacaggggct ttaaaacttg atgaaaaaaa tatcaaagct
     2701 aaaaaacgct tagaacccgg aaaactttta ctcgttgata cagcaagagg tagggttata
     2761 gctgataatg aaatcaaaga gcattatgct aatgctaagc cttataaaaa atggcttaaa
     2821 aatttagttg aacttgaaaa acaaaaaagc ggagtttata aacatcagtt tttaaaagaa
     2881 gatgaggttt taaaacttca aaaagctttt ggttggagtt atgatgagct taaaatgagc
     2941 gtggctgcta tggctcaaaa tggtaaagaa gctatagcag ctatgggtgt agatactcct
     3001 ttggctatac tttctaaaac ttatcaacct ttgtataatt attttaaaca actttttgca
     3061 caagtaacta atcctcctct tgatgccata agagaagaga ttgttacttc tacaaggatt
     3121 tatctaggaa gcgaaggcaa tttattaaaa cccgatgaaa acaatgcaaa acgcgtaaaa
     3181 atagccttgc ctgtgataag caatgaagaa ctttttgaag ttaaggcttt aaataaattt
     3241 caagttaaag aattttctat actttatgat tattctaaaa aaactttaga aaaggcttta
     3301 gatgaacttt gcgttaagat agaagatgag gttaaaaaag gtgtttctat tatcatttta
     3361 agcgataaag gagtggatga aaaaaacgct tatatccctg ctttgcttgc tgtttctgga
     3421 gtgcataatc atctagtaag aaaaaattta agaacacata caagtcttat catcgaaagt
     3481 ggtgaaccta gagaaattca tcattttgca tgtcttttag gttatggtgc aactgttatt
     3541 aatccttatt tggtttatga gagtatacaa aaactcattg ccaataaaga tttaaattta
     3601 agttatgaaa aggcggtaga aaatttcatc aaggcaagtt caagtggtat agtcaaaatt
     3661 gcttctaaaa tgggggtttc taccttgcaa agttataatg gctctgcact ttttgaatgt
     3721 ctaggcttaa gctctaaggt gattgataaa tacttcactt ctacaacttc acgcattgaa
     3781 ggtatggatt tagaagattt tgaaaaagaa ctcattgctt tacacaaaca tgcttttaac
     3841 gatacacata aggctttaga ttctaaagga attcatggtt ttagaagtgc taaagaagaa
     3901 catttaattg atccgcttgt gatttttaat cttcagcaag cctgtcgcaa caaagactat
     3961 aaaagcttta aaaaatactc ggctttagta gatgaaaaac aagttaattt gcgttctttg
     4021 atggaatttg attttagtga agctatcagt atagataagg ttgaaagtgt agaaagtata
     4081 gttaaacgct ttagaacagg ggcgatgagt tatggttcta tttctaaaga agcgcacgag
     4141 tgtttagcac aggctatgaa taaaataggt gctaaatcaa attcaggtga aggtggcgag
     4201 gatgaagaac gctatgaaat caaagagggt gtggataaaa actcagccat taagcaagta
     4261 gcaagtgggc gttttggcgt ggatttaaac tacttaagtc atgcaaaaga aattcaaatc
     4321 aaagtcgctc aaggtgcaaa accaggtgag ggcggacaat taatgggctt taaagtctat
     4381 ccttggatag ctaaggctag acattctact gcaggtgtga cgcttatttc cccacctcct
     4441 catcatgata tttattctat tgaggatttg gctcaactca tttatgattt aaaacatgcg
     4501 aacaaagacg ctaaaatttc agtaaaactt gtaagcgaaa atggcatagg aacggttgct
     4561 gcaggtgtgg ctaaggcagg cgcgaattta atccttgttt caggttatga tggaggtacg
     4621 ggtgcaagtc ctagaacttc tataccgcat gctggaattc cttgggagtt aggcttagct
     4681 gaaacgcatc aaactttgat cttaaataag cttagagata gggtaagatt agaaactgat
     4741 ggaaagctta tgaatgggcg tgatttagcc atagcagcac ttttaggagc tgaagaattt
     4801 ggttttgcaa ccgctccttt gattgtttta ggttgtacaa tgatgagagt ttgtcatcta
     4861 aatacctgtc cttttggtat agccactcaa gatacagaac ttagagatcg tttcaaaggc
     4921 aaagtagatg atgtgattaa tttcatgtat tttatagctg aggagcttag agaatacatg
     4981 gcaaggcttg gttttgaacg cctagatgat atgataggtc gcgtggataa actccgccaa
     5041 aaaagtgtgc aaggtaaagc aggaaagcta aatttagata aaattttaaa atccttgcct
     5101 acttataata gaaccgctgt gcattttaaa gattataaag acaataaact tgaaaaaacg
     5161 attgattata gaattttact accactttgt aaaaatgctg tggagaaaaa agagcctatc
     5221 aaactttctt tagaagtagg aaatcaaagt cgtacttttg caactatgct ttcaagtgaa
     5281 attttaaaaa cttatggaaa agatgcttta gatgaagata gtatccatat caaagctata
     5341 ggcaatgcag gcaatagctt tggagcgttt ttgttaaagg gtattaaact tgagattata
     5401 ggcgatagca atgattattt aggcaagggt ttaagtggtg gtaaaatcat agcaaaaatt
     5461 tcaaatgaag ccactttttc acctgaagaa aatatcatcg caggaaatgc ttgtttatac
     5521 ggagctacaa aaggtgaagt gtatttagat ggtatagcag gggaaagatt ttgtgtaaga
     5581 aattcagggg ctttggctgt ggttttagga acaggcgtgc atggttgtga atatatgaca
     5641 ggtggacaag ttgtagttct tggagatgtg ggtgcgaatt tcgctgctgg tatgagtggg
     5701 ggcgttgttt atatctttgg aagacacaat gaagctcatg taaataccga gcttgtggat
     5761 attaaagatc ttaatgctaa ggatgaaaaa gaattaaaag ctgtgataga aaaacatatc
     5821 acttatacag attctaaaaa ggctaaagat attttagaaa aattcgataa aaaagacttt
     5881 tttaaagtca tgccaagaga ttatgaaaag atgttaaaaa tgcttgatct ttgtaaaaat
     5941 gaaaaagatc caaatttagc agcatttttg aaaatcacac aaaaataagg agtaaaaatg
     6001 gcaggatttc aatcaccaat aacaattaat gaagcaatgc aaagaataaa aaacaatgaa
     6061 tatttacttc cagcatttca aagagagtat gtttgggagc cttggcagat agaagaatta
     6121 tttgattcac taatacgagg atatcctata agttctatgc ttttttggaa agtaaaagat
     6181 gaaagcaaga cagcttggaa attttataga tttttagaat attatcgtga atcgtatcat
     6241 acgcataatg attattttaa cacctcaaac cataaagatt tttatgcgat tttagatgga
     6301 caacaaagat taacttcgct ttattttgct ttgtttggaa attatgatat tcacagatca
     6361 tataataaat gggagaacaa tgatagatat tttaaaattt gtcattttta ttttaatctc
     6421 actcaaagca agaaaccaga aaatgaaaat attgaatatg aatttttatg gcttgataaa
     6481 ttagaaacaa aagaacaaaa tatttatatt gataaatatc agcaaaaatg gtttaagtgt
     6541 cagtatttat atcaatatga ttcaggaaga gtaagaaaaa tagcaaaaga atttaattta
     6601 aacgaaaatg aagaagatag attagatcta ttgcatcaaa agatatttga taagaattta
     6661 attaatttc
//
LOCUS       DARBBO010000086         6663 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.086, whole genome shotgun sequence.
ACCESSION   DARBBO010000086 DARBBO010000000
VERSION     DARBBO010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6663
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.086"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            12..1504
                     /locus_tag="SB854_001410"
                     /pseudo
     CDS             12..1504
                     /locus_tag="SB854_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
     gene            1705..3258
                     /locus_tag="SB854_001411"
     CDS             1705..3258
                     /locus_tag="SB854_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HEG0957396.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKMIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDST
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILACAGIYFL
                     YLFAFTSLKIEEKRNLIIFIVLFLAAALFWSVYEQQYTSFNFFAEKLTDKTILNYEIP
                     TIWFQSLGGLFVILFAPFSAFIWTICAKNNKEISSIIKFALGLLGAALAFLIMALASN
                     HAISLNGDADTLRENLENSSQIILVSPWWLVSSFLLMVLGELCLSPVGLSIMTKIAPN
                     LIKSQVMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAVIILLILK
                     KPINKILKN"
     gene            3274..5064
                     /locus_tag="SB854_001412"
     CDS             3274..5064
                     /locus_tag="SB854_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEG0957397.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLKINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNVTSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAAKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDVKASEFRAQSKYYISDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHITISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKAKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(5184..>6663)
                     /gene="mrdA"
                     /locus_tag="SB854_001413"
     CDS             complement(5184..>6663)
                     /gene="mrdA"
                     /locus_tag="SB854_001413"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG0957398.1"
                     /translation="KRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKR
                     KYPFGKLASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYK
                     VNALNQEVEQLSYIPAKSNDIELTIDIELQSYLTSLFEGNAGAAIIMNVNDGSILAAG
                     SFPEYDLNPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKN
                     ISPSTQYVCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQIS
                     ETLSRIGFGVKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPM
                     QIARYTAQIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMY
                     AVANEQGGTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTS
                     YAPYSKPKYVVTVLLEHGGRNITSGATVAKIYQKMIDLGYFK"
BASE COUNT         2281 a         1001 c         1023 g         2358 t
ORIGIN      
        1 ggtattggga agtgactaaa caagaaatac aaaaactcga tacaaatttc ctaggtcatc
       61 gcaagccctt attctcttta tcaatggtag aactttggga aagatttgct ttttatggca
      121 tacgatcttt acttgtgctt ttcatggcaa caaccataag caaaggtaga cttggaataa
      181 gcactgaata cgcctaggca atttatggca tttttgcagg atgcttgtat ttagcagcac
      241 ttcctggagg ctggattact gataattatt tagggcaaaa aaaggcttta tttttaggtt
      301 cttttattat agctttagga catattagca tagccttatc tattttaagc acacctatgt
      361 ttttcctagg gcttactttt atcgttattg gtactggatt ttttaaaact aacgcttctg
      421 taacagttgg aatgttgtat aaacaaaatg atacaagatg cgatactggc tatacgattt
      481 tttatatagg aattaacatt ggagcattca ttgctcctct tatatgtggt tttgttcaag
      541 caaaatggaa ttatcattta ggatttgtca taggaggttt aggtatgcta atctctttgc
      601 ttattttata ttttaaagct gcccttgagc ttgaagaatt tcataaaaat tgaaccttaa
      661 agcaaaactg ggaataacca tttaaaaaag taaaaaattt aactcttata ctaagtataa
      721 gcttgttaag tattattgga ttttttctaa tgtttattaa tcttgtaaat attaatccca
      781 tataatacta tcaaaaaaac ttctaattgt aattttacta tgtttggtaa tttatttcat
      841 atatcttttt gtttttaaag ctttaaataa aagagaaaaa cagcaattaa caattttaat
      901 tgttttattc tttgcagcca cttttttttg gagtgctttt gaacaaaaac ctactgctta
      961 taatcttttt gcgcaagatt ttacaaatag aaatattttt gattggaaaa ttctaacaaa
     1021 ctggtttcaa tcttttaatc caatttttat catcatactt gctcctatag caagttatat
     1081 ttggatattt ttagagaaaa aaaatatata tttttcttcc attggaaaat ttactttagg
     1141 aatattattt gccggtattg gttttatgat gatgaccttt gcttcacaaa atctaataaa
     1201 caacaatggt ttgccaatat ccatggcttg gattatcata agtatattct ttttaacact
     1261 tggggaatta tgcgtgtctc ctattggact ctctataatg gctaaggttg cccctgattt
     1321 aatcaaaaat caaatcatgg gactttggtt tgtagcaagt gcgcttggaa attttgttgc
     1381 aggacttata ggaggaaatg tcaatattaa aaacatcgat caacttccta atatttttgg
     1441 acaatgcatg tggatgcttt ttgttgtagc acttttgctt tttattgcta aaaaaccatc
     1501 ttaacaaaaa aaaataagca attatctaac taaacttaaa atacaaaata caccaaagtt
     1561 gaaaattgat cttaatattt ctttttttta tatttgcaaa aaagtaacat tatgatataa
     1621 atcatttaaa aatattacaa agttatacat attttttaat ttcttgtcta taatttataa
     1681 ataaaaatac acaaaggata taaattgagt aaaaatgtaa aaaatttaga tacttcattt
     1741 tttggacatc caaaaccact tttatctctt tcacttactg agctttggga aagattttct
     1801 ttttacggaa ttcgtccctt gctttacctt tttatgatag caagttttga aaaaagtgga
     1861 atgaacttaa aacctgaaga agcaagtgca attatgggaa tttttgcaag ttgtttatat
     1921 cttgctgctt tgccaggtgg atggcttgcg gacaattact taggacaaaa aagagcaatt
     1981 ttactaggtg ctttaactat agcatttgga catttgtgca tagccttttc ttattttaac
     2041 aataaaatga tttttgttgg tatggttttt ttggttatag gtacaggact ttttaaaact
     2101 tgtgcttctg taatggttgg aatgctttat aaaaaaaatg atgcaaggcg tgactctggt
     2161 tttactcttt tttatatgtg ctttaatttt ggtgcttttg tagctccttt aatttgcggc
     2221 tttttacaaa aagaatacgg atggcatttt ggttttggtg caggtgggat tggtatgctt
     2281 ttagcggtaa ttattttcta cctaaaaact atgcctgatt taaaagaatt tgatgaaaaa
     2341 gttggcatag actctacttg ggatagacca agcaaaaaaa gcaaaaacgc attttacatc
     2401 atcattgtat caggtattgt tttgcttgga gcaatatttt taatccttgg tggttttata
     2461 aaattagatg cacaagttat taataaaaat attattctaa ctatcttagc ttgtgctgga
     2521 atttattttt tatatctttt cgcttttact tctttaaaaa tagaagaaaa aagaaattta
     2581 attattttta ttgttttatt tttagcggct gcgttatttt ggtcagtata tgagcaacaa
     2641 tacacttctt ttaatttttt tgcagaaaaa ttaacagata aaaccatatt aaattatgaa
     2701 attcctacaa tatggtttca atctcttgga ggtttatttg ttatactttt tgcacctttt
     2761 agtgctttta tatggactat atgtgccaaa aataataaag aaatttcatc tattattaaa
     2821 tttgcattag gacttttggg tgcagctttg gcatttttaa taatggcttt agcttcaaat
     2881 catgcaatta gtttaaatgg cgatgctgat acattaagag aaaatttaga aaattcatca
     2941 caaattattt tagtttcacc ttggtggctt gtcagtagct ttttgcttat ggttttagga
     3001 gagctttgcc tttcccctgt gggactttct ataatgacaa aaattgcacc taatttaatt
     3061 aaatctcaag tcatgggact ttggtttgta gcaagtgcat taggcaatgc tttagctgga
     3121 ttcataggtg gtaaagcaag tgaagaaaat atagcttatt tgccaaattt attttaccaa
     3181 tgtatgtgga tattacttgg tgctgttata attttactta tactcaaaaa acctatcaat
     3241 aaaatactaa aaaattaata ttaaggagaa aatatgagta tttacaaaca aagagtatta
     3301 gaacttagaa gattaatgaa agaaaataat attgacgcct atctcatctt aagtgcagat
     3361 ccgcatttga gcgaatattt accagaatat tacaaaaaca gagtctttat cagtggcttt
     3421 aagggttctg ttggaacagt tcttatcaca caagaagagg gctttttgtg ggtagatgga
     3481 agatattggc ttcaagcaca aaaggaatta gaaggtagtg gcatactttt acaaaagcaa
     3541 gatgctaaaa atacttttac caaatggttg gaaaaaaatt taagcgaaga tcaaatttta
     3601 ggcatcgatt ttgcactttt acctttatct ttgcaaaaag atttaaagat taattgcaag
     3661 gcaaatttaa aacatataga tttgataagt ccactttgga aagatcgtcc cactttacca
     3721 caagaaaaaa tttatgaaca cgaactagaa tactgctctt actcaagaaa agaaaaatta
     3781 gcattagtgc gtcaaaaaat gaaaaattta aatgttacct ctcatttaat ctccagcctt
     3841 gatgatatag cttggcttac aaatttaaga gggaatgatg taaattataa tcctgtattt
     3901 ttaagtcatt tgctaatctt ggaagacaaa gccttgcttt ttgttgatca gaaaaaagta
     3961 aattcagaac ttgaaaaaaa attaaattta gatgggtttt ggcttaaaaa ttatgatgaa
     4021 atcatcatgg agcttgaaaa acttgcaaat acaaatttgc ttattgaacc ttcaaaaatg
     4081 accgctttac tcataaattc tttagataaa agcgtaaaaa tcattcaaga aattaatcca
     4141 agcactcact taaaagcagc taaaaataca aaagaaatag cgcatataca agatgctatg
     4201 atagaagatg gagtggcttt atgtaaattt tttgcctggc ttgaagaagc gatagaaaat
     4261 aaagaactaa taagcgaatt agacatagat gttaaagcaa gcgaatttag agcacaaagc
     4321 aagtactaca taagtgatag ttttgccact atagcaggct ttaacgaaaa tgcagcatat
     4381 ccacattata aagccacaaa agagagtttt gcttatctta aaaaagatgg gcttttactt
     4441 attgattctg gtggacaata taaaaacggc acaacagata ttacacgcgt tgtaccaata
     4501 ggaaaggcta atgcagaaca aattcatgac tataccttgg ttttaaaagc acatattacc
     4561 atttccagtg caatttttcc aaaagatata gctatgccct tacttgatgc aatcacacgc
     4621 gcacctttat ggaaagaaca aattgactat atacacggca caggacatgg cgtgggatat
     4681 tttttaaatg tccatgaagg tccacaagtt ttatcttatc tatcccctgt gcttgaaaaa
     4741 acaaaagcca aagaaggtat gctaacctcc atagaaccag gtatttataa agtaggtaaa
     4801 tggggtataa gacttgaaaa tttagttatt cataccaaag tagaaaatcc taaaaataaa
     4861 gattttggag agtttttata ctttaaacct gttactcttt gtccttttga aatatcttgt
     4921 attgatacaa aaatgttaga tgaaaaagaa aaagagtggt taaacaatta ccacaaagaa
     4981 gtatttgaaa aactttctcc taagctaggt gattatccaa aagctctagt ttggcttgaa
     5041 aaaagaacaa aagccatctt ttaagatact tttgttaata tagataaatt ttccttgtat
     5101 taaacttata atttatttaa tacaaggttt ttaaaccaat tgctaaaaaa atttttttga
     5161 aaaactcaat ttacaactaa aaattattta aaatatccaa gatcaatcat tttttgataa
     5221 attttagcta cagttgcccc tgaagtaata tttctcccac catgctccaa aagaacggta
     5281 actacatatt ttggcttaga ataaggagca taagaagtaa gccacgcatg agatctagta
     5341 taatactcaa attgtttttc atcgacccta tttttatctg tttgtgaaaa tcccacaacc
     5401 tgagcggttc ctgtttttgc tgcaactttc acatcaagat tatgcaaata acgataagag
     5461 gttcctcctt gctcattagc aacagcatac attgcatctc ttatataagg caattgactc
     5521 ttttcaaata aagtaaaaat ttctttttta ttttcatcca tttgattttc tatagttgta
     5581 ttattatttt ctatgctttt taaaaaatga ggtataacct ctccaccttt tgcgatttga
     5641 gccgtatatc tagcaatttg cataggtgtt gcaagaaaat taccttgacc tatagctgta
     5701 tttaaagtat caccttgaaa ccaagattgt ctatatcttt gcatcttcca ttctttgctt
     5761 ggtaaagttc ctacaaattc actaggtaaa tctacccctg ttttcactcc aaagccaatg
     5821 cgagataaag tttcacttat ttgatcgatt ccaacttgca aactgccatt ataaaaataa
     5881 acatcacaac tatattttat cgcatgtttt aaatccacag gtccatggcc tgatcgattc
     5941 caacatctaa aaaacctgcc tccaagctca atgcttccat tgcaaacata ttgagttgat
     6001 ggactaatat ttttagaatt taaaaaagaa agccctactc ccatttttac aacagaacct
     6061 ggaggataat atccatttat aagtttattt gtaaaaggat gatcaagact atttgaaagc
     6121 tcatcccaat ccttaaaaga aatccctgtt acaaaaggat taagatcata ttcagggaaa
     6181 ctccctgcag ctaaaataga tccatcattt acattcataa ttatagcagc cccagcattt
     6241 ccttcaaaca atgaagttaa ataagactga agctctatat ctatcgtaag ttctatatca
     6301 ttagacttag caggaatgta agaaagctgt tctacttctt gatttaaggc attaacctta
     6361 taaactctag ttcctttttc tccttgtaaa atatcattat aatagcgttc tataccgctt
     6421 tttcccgtat agttagaaag ttttgctatt tcattttctt gaacatcttg caaatttgcc
     6481 ttacctacat acccaataat atgcgaagct aattttccaa aaggatattt tctttttaca
     6541 acaggatcta tttttattgt tttattaaga tttaactctg aataatgcgg aataatctca
     6601 tcgtagggta taaaatctac aactttaata aaatcttgat tatagtaaga atcatttctc
     6661 tta
//
LOCUS       DARBBO010000087         6533 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.087, whole genome shotgun sequence.
ACCESSION   DARBBO010000087 DARBBO010000000
VERSION     DARBBO010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6533
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.087"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..756
                     /locus_tag="SB854_001414"
     CDS             <1..756
                     /locus_tag="SB854_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEG0957399.1"
                     /translation="LEKFYNQDENKLKYKDFAGKVMDFQSAKNEVTKDYALMQLKNVA
                     NAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAPYNNGYIIVKLNKV
                     DPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIGFVSRDSSRESVKV
                     SDKILNDSEFAYFLMNVFNTDQNSSYVVINDNKAILYKINKQKLDMNSDKFEQYKTML
                     EQNLQNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            753..2141
                     /gene="ftsA"
                     /locus_tag="SB854_001415"
     CDS             753..2141
                     /gene="ftsA"
                     /locus_tag="SB854_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEG0957400.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDKVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLNYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDTESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            2157..3269
                     /gene="ftsZ"
                     /locus_tag="SB854_001416"
     CDS             2157..3269
                     /gene="ftsZ"
                     /locus_tag="SB854_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEG0957401.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            3425..4237
                     /locus_tag="SB854_001417"
     CDS             3425..4237
                     /locus_tag="SB854_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HEG0957402.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIADF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGSLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLENSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLASVK"
     gene            4268..5059
                     /gene="flgG"
                     /locus_tag="SB854_001418"
     CDS             4268..5059
                     /gene="flgG"
                     /locus_tag="SB854_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HEG0957403.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(5126..>6533)
                     /gene="glnA"
                     /locus_tag="SB854_001419"
     CDS             complement(5126..>6533)
                     /gene="glnA"
                     /locus_tag="SB854_001419"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEG0957404.1"
                     /translation="DDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHTINEETFQTG
                     IPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYKGQMYEKCP
                     RSIAKKAMEYLKNSGIADTAYFGPENEFFVFDSVKIVDTAHCSKYEVDTEEGEWNDDR
                     EFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHHEVAQGQAE
                     IGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHVHMSLWKDG
                     VNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFEAPCILTYS
                     CQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNKTIPVGPMD
                     ENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQHLKFETQV
                     WPVEARPTAYEFKTCYSC"
BASE COUNT         2310 a          913 c         1230 g         2080 t
ORIGIN      
        1 ttagaaaaat tttataatca agatgaaaat aaactaaaat ataaagattt tgcaggtaaa
       61 gtgatggatt ttcagtctgc taaaaatgaa gttactaaag attacgcctt aatgcaacta
      121 aagaatgtgg ctaatgctaa atttttagat ttaaaaaatg ggaaagataa ttttcaaaaa
      181 gatcaaaata ttagtgaatc tgatgtttat tatccaattg atcttttgaa taaagctaaa
      241 aatggagatg ttttacggcc agcaccttat aataacggat atatcatagt taaactaaat
      301 aaagtagatc ctataagaaa taaaactttt gaagaagcta gagaagaagt tttacctatg
      361 tatttaagcg aacaagctag aaaaaattta gaagaaaaag ctaaaaatag tttagtaaat
      421 tttaaaggcg atgatatagg ctttgtaagt cgagatagtt ctcgcgagag tgtaaaggtt
      481 agcgataaaa tattaaacga ttctgaattt gcttattttt taatgaatgt atttaatact
      541 gatcaaaata gttcttatgt ggtcattaat gacaataaag caatattata taaaataaat
      601 aaacaaaaat tagatatgaa ctccgataaa tttgaacaat acaaaactat gcttgaacaa
      661 aatttgcaaa atttaaaagc aaatgagctt aagcaagaac ttgttgatga acttaaaaag
      721 atatatccga taaaaattta ttataaaggg aattgatttt gaatatatta ggaattgact
      781 taggctcaac ccagacttgt gccattattg ctcaaaaaga tgaagatgga ttaaaaatta
      841 ttggtttttc caagtcgaaa accaacgggg ttaaaaaagg tgccattacc aatatagagc
      901 ttgcttctaa atctattgaa gaggctgtta gaagtgctga gatgatgagc ggagttcatt
      961 atgataaggt tgtggtatct atatcaggtg cttatactaa aagcgttgat agcataggtg
     1021 ttgttaatat tccaaatcat gaaataggca ttaaagaaat tcatcgtgct gtaagtacag
     1081 ctaagcatac tgccaatcta ccaagtggtt atgaaattat ccatgttttg ccttataatt
     1141 ttaaggttaa tgatcttgaa catgttgatg atcctttggg aatgagtggc aatcgtttag
     1201 aagtttcaac ccatatagtg atttcacaag aatctcatat taaaaatctt aagaaagcag
     1261 ttgaattagc tgatttaaga gtggataata tagttctttc aggatatgct tcagctatag
     1321 cttgtttaga tgatagcgaa aaggaattag gtgctgtttt gattgatatg ggtggagcga
     1381 tttgcgatat ggttgttcat actggaaatt caattagata taatgattgt ttgcaaattg
     1441 gctcgattaa tatcacccaa gatttatcaa tggcattgca tacaccttta aaagaagcag
     1501 aaaaaatcaa gcttaattat gcagctcttt cgcaacagcc taataccctt atacaaattc
     1561 cttcaatggg tgatgaaaga aaggttaatg aagtttcttt ggatattatt tcaaacgtaa
     1621 tttatgcaag agcggaagaa actttgatga ttttggcaaa aatcttaagt gataatcgtt
     1681 atgccaatgc tataggcggt ggagttgttt taacaggtgg aatgactaag ttagcaggta
     1741 ttgatgagct agctcctgca acatttgata atcgctcagt tagactggct actgcaagaa
     1801 aagatttgat tactggtttt agtgaaattt ttaatgatcc tgaaaatact tgtgctatag
     1861 gactttgttt atatggagca gggtatttta cgccttatga acttgattct aatgaaaaat
     1921 taagatataa aggggaaatt gaaaatttta atcgtcaaat taaacaagat attgttttgc
     1981 aaaaagatac agaaagtgaa ataaaatctg atttttttga tgaaaatttg caagaaaatg
     2041 atacaattgc aatacaagaa caattagatt ttaaagagcc aaaagaaaaa aaacctagcg
     2101 ttttttcaaa tatctggcat aaaattatga atcaatttta acaaggagaa atttttatga
     2161 gtgaattttt agtagaagaa atgcaacata ataaaggtgc aaaaattaag gttataggct
     2221 gcggtggcgg tggcggtaat atgatcaacc atatggttaa aatgggatta aatgatcttg
     2281 atttaattgc agcaaatact gatgcacaag ctatttcaat ttcattagca aaaactaaaa
     2341 ttcaacttgg cgagaaaaaa actaaaggtt taggcgctgg tatgcttcct gaagtaggtg
     2401 cagaaagtgc tagagaaagt tttgaagaaa taaaagcaag tcttagtcaa agtgatattg
     2461 tatttattgc ttcaggtttt ggtggaggta ctggaacggg tgccactcca gttattgcac
     2521 aagcagctaa agagattgga gctttaactg tttctgttgt aactatgcct tttgcattcg
     2581 aaggaaaaca aagaaaaaaa cttgctgaaa gcggtctcct tgagcttaaa aaagaaagtg
     2641 attctattct tgtaattcaa aatgaaaaat tattgagcat tattgataaa aaagcaggca
     2701 ttaaagatgc ttttagattg gttgatgata ttttagctcg tgctgtaaaa ggtatggtgt
     2761 ctatcttgct tgataatgga gatattaatg ttgactttgc ggatgtaaga accatcatga
     2821 gtcatcgcgg actcgcgctt atgggtgttg gtagcgctag tggtgaaaat gctatagaag
     2881 aggctctttc aaacgctata gaatctcctt tgcttgatgg aatggatatt aaaggtgcca
     2941 agggagttat tttgcatttt aaaacaagtt ctaattgctc tttgtttgaa atttcggcag
     3001 cagcaaatag tatacaagaa attgttgatg aaaatgctaa gattattttt ggttctacta
     3061 cagatgatag catggaagat agagttgaag taactattat tgcgacaggg tttgaagata
     3121 aagatacagt agctaaaaaa tctaccgaag aagctcaagc ttctaagaaa aatccttatt
     3181 taagtcttaa aaaggtaagc ggtggttatg atgaagagat aatggcgcaa attgaaacac
     3241 caactttctt gcgtcgtcaa atggattaaa attgattttt aaagcaagat tgagtcaaat
     3301 cttgcttttt atagtttaaa attctctcct aataatcttt caaatattta tttttctttg
     3361 tttttaaaaa ttggaacact ctttgctttt atagctataa aatcttaatt ttataggtga
     3421 aaatatgcaa aatggatatt atcaagcaac tggcggaatg gtaactcagt ttaataaact
     3481 tgatgtgatt actaataatc ttgccaatat taatacaagc ggatacaaaa gagatgatgt
     3541 ggttattgca gattttaaaa ggatttttaa agaaactcag gatgagttgc ctatagaaaa
     3601 tcacacaaga gatgcatctc gttttgtaaa tactacaata gatggaatcc cacaagtttc
     3661 tcaagaatat acggatttta gcctaggttc tttaaaggcc acaaacaatc ctttggattt
     3721 ggcaatgact agagaagatg ctttttattt ggttcaaacc aaagatggag aagtaagatt
     3781 aactaaagat ggaaattttc aacttgatga tgagggttat ttggtaaata agcaaggata
     3841 caaggtatta agtagtgatt attttaataa tcctcagaat gctggcatac gcattcctaa
     3901 tggtgctgtt caaattagcg ttgataaaaa cggaagcatt gaggttgatg gagctcaaaa
     3961 tgcaagatta tttgtagcac aagtagatga tataagagct ttgcaaaaag atggggataa
     4021 tgtctataaa atagatgatc taacccgcat tagagatttg gaaaactcca atgctattcg
     4081 ccaaggtttt tctcagggat caaatgttaa tccagttact gaaatggtag gactgattga
     4141 agcaaacaga atggtagaaa tgtatcaaaa agttatgaca gctcatatgg atgacttaaa
     4201 tcaagaagct atcaataagc ttgcatctgt taaataattt aaaataaaat aaaaaaaagg
     4261 attaaaaatg atgagatcac ttcatactgc tgctacggga atggtagcac agcaaacaca
     4321 aattgatgtt acctcaaata acatcgccaa tgttaataca gcaggtttta agaaaagtcg
     4381 cgcagaattt gctgatctta tgtatcaagt tatgaagtat gcaggaactt caacttcagc
     4441 tactactctt tctccttcgg gtatagaagt gggtgtgggt gtgcgtccaa cagcggtaac
     4501 taaagttttt actgaaggaa atttaaaatc aacaagtact gatggtcttg atatggctat
     4561 tgcaggtaat gggttttttc aaatacaact tcctgatggc actataggat atactagaaa
     4621 tgggcaattt acaaaagata atgaaggtaa tattgtaaat tcagatggtt atagactttt
     4681 acctgaaatg acaatacctg aaggcgcaac agcaattaat gttgctacag atggaaccgt
     4741 ttctgtaatg ttgccagggg agcaacaaga aactcaaatt ggccaagtgg agctagttca
     4801 gtttataaat ccagcgggtc ttcattctat gggtgataat ctttatcttg aaacaggagc
     4861 aagtggtgca cctgttgcgg gtatagcagg acaagatggg cttggaacaa taagacatgg
     4921 atttatagaa cttagtaatg ttcagcttgt tgaagaaatg acagatctta tcacaggaca
     4981 aagagcttat gaagcgggtt ctaaggcaat tacaacaagt gatgatatgc taggaattgt
     5041 aaatcagctt aagcgatagt tgatataaaa taaataattt ttaattcttt tttagtttaa
     5101 tggcgtgtta aacgccatta aatttttagc aagagtagca agttttaaat tcataagcag
     5161 ttggacgagc ttctactggc caaacttgtg tttcaaattt taaatgctga tagtcatcga
     5221 taaaaatatc gctcattaca ggttttaaat aagaattatg tcggattaaa gcttctaaac
     5281 ttcctcttag agtatgcggt aattgctcta tccctttttc acgtatttca tccaaagtaa
     5341 gatcaaataa attttcatcc ataggaccca caggaatggt tttatttttg attccatcaa
     5401 gacctgccat taaaagacta acaaaagcta aataaggatt agcagtgcta tcagggaagc
     5461 gaatttctat acgagctgaa tttttaccta tgccataagg aacgcgacaa cttgctgatc
     5521 tgttttgaca agaataagtt aaaatacaag gagcttcaaa gccaggaact attcttttgt
     5581 aagagttgga acttggattt gtaaaagctg cgacacttct agcatttttt aaaattccac
     5641 ctatataatt tatagcagtt tgactaagtc cactgtatcc atctttatcg taaaataaat
     5701 ttaccccatc tttccataag ctcatatgaa catgcatacc attgccatta tctccgtata
     5761 aaggttttgg cataaaagtg gcagttttac catttaaatg agctaccatt tttacaacat
     5821 atttataaat ttgaacattg tcagccgctt ctacaagcgt gccaaaattt actcctattt
     5881 cagcttgtcc ttgtgcaact tcatgatgat gaacaaaagt tttaaggcct actttttcaa
     5941 gagtttgaac catttcagaa cgaatatcta ctaaagaatc aattggctga actggaaaat
     6001 atccaccttt gtttcttggc ctgtgtccag tattgtagct atcagtaaat tctctatcat
     6061 cattccactc tccttcttcg gtatcaactt catacttaga acaatgagca gtatcaacta
     6121 tttttacact atcaaaaaca aagaattcat tttctggtcc aaagtaagca gtatcagcta
     6181 tgccactatt tttaaggtat tccattgctt tttttgctat gcttcttgga catttttcat
     6241 acatttgtcc tttgtaaata tcatacacat cacaaaacac tatgatagta gggtcagctg
     6301 taaaaggatc taaaaaagca ctttgagcat caggttttaa aatcatatct gatttttcta
     6361 taggttgcca tccatgaatt gagcttccat caaatggaat gccagtttga aatgtttctt
     6421 cattgattgt atgaagatta taggtaatat gatgccaagt tcctatcata tctgtaaaac
     6481 gaaaatcaac aaaaagcact tcattttgtt tgcaaaattt gaaaaaatca tct
//
LOCUS       DARBBO010000088         6411 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.088, whole genome shotgun sequence.
ACCESSION   DARBBO010000088 DARBBO010000000
VERSION     DARBBO010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6411)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6411)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6411
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.088"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            146..328
                     /locus_tag="SB854_001420"
     CDS             146..328
                     /locus_tag="SB854_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HEG0957405.1"
                     /translation="MVSDVSMGNANLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQASSSSGLDIYA"
     gene            471..1619
                     /gene="nhaA"
                     /locus_tag="SB854_001421"
     CDS             471..1619
                     /gene="nhaA"
                     /locus_tag="SB854_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG0957406.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFIAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEYADKLAILVASFLSAIVGFIYLKIVK"
     gene            1616..2785
                     /gene="nhaA"
                     /locus_tag="SB854_001422"
     CDS             1616..2785
                     /gene="nhaA"
                     /locus_tag="SB854_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HEG0957407.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFALVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIVAFVVAGLAILVMLILNLLGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIVTAFFIPMQTKNGEAFLEEIYESLKFWIAFIILPLFAFANAG
                     VNLSNIDIGAIFSGVSIGIFLGLFVGKQVGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFTTRS"
     gene            2794..3252
                     /locus_tag="SB854_001423"
     CDS             2794..3252
                     /locus_tag="SB854_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEG0957408.1"
                     /translation="MRHIFFIITIIFFISGCSFYQNLNYRPSYNTNKEARLKVIANEW
                     KKTPYVLGGTSKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLVF
                     FKTGRGPNGMHVGIYMSKGKFIHLSTKDGVKEVELNSSYWKARYIGARRY"
     gene            3254..3997
                     /locus_tag="SB854_001424"
     CDS             3254..3997
                     /locus_tag="SB854_001424"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEG0957409.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGRSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKAKLHFYASSDVKSLKNTAKIWLNL"
     gene            4007..4765
                     /gene="map"
                     /locus_tag="SB854_001425"
     CDS             4007..4765
                     /gene="map"
                     /locus_tag="SB854_001425"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEG0957410.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLEHEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVLPTDKALISCAKDALYHAIDIIHDGMRFKELSAALGEFIHARGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(5134..5634)
                     /locus_tag="SB854_001426"
     CDS             complement(5134..5634)
                     /locus_tag="SB854_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957411.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELATAITMGETMDNAGIYNSTMD
                     FKNLFK"
     gene            complement(5690..6289)
                     /locus_tag="SB854_001427"
     CDS             complement(5690..6289)
                     /locus_tag="SB854_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane integrity-associated transporter
                     subunit PqiC"
                     /protein_id="HEG0957412.1"
                     /translation="MLKQLFCILTFIFMLCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNTNAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLSADYSLESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIRSTYNAFQKALNKIGNEIVFWVNSNLS"
     gene            complement(6289..>6411)
                     /locus_tag="SB854_001428"
     CDS             complement(6289..>6411)
                     /locus_tag="SB854_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MCE family protein"
                     /protein_id="HEG0957413.1"
                     /translation="NLELFKRVLIESNILIENLQNSPADLIFKETKPKLGPGEK"
BASE COUNT         2039 a          790 c         1119 g         2463 t
ORIGIN      
        1 gattttatct taaaaaattt atgattttta atttcagata ttggttccct tgaaaaattt
       61 taaaaagttt agtaaaaaat attaagtttt aaaaatatca tccgatttaa ataaagtctt
      121 aagactcaat ctaaaaggag gatgtatggt ttcagatgtt tctatgggta atgctaattt
      181 aatgactgct gttaatactt cagttttgaa aaaatctatg gacacaaacg aggcattgat
      241 gaatgaactc atcgaaggta tggaaggtgt ctctcaagcc tccgctccac aagcgtctag
      301 ctctagtggt ttggatattt acgcttaaat atcttaagaa caagcttaag aactttttgg
      361 tatcttgggc ttgttttttt aaataattat ttctttagta ttttttcgtt ataattttac
      421 cattttattt atcgtattaa atttttacaa atatttactt aggagcaagg atgcaaatga
      481 taaagaagat ggttttaagt gaaactttcc ctggtatttt gcttatattt tttacatttt
      541 tagctttatt atgtaaaaat tcttctttaa gtgttattta tacagatttt tttcatgcta
      601 attttacagt aggatttgat cattttcaaa tttcaaagtc gttggattta tggataaatg
      661 atggtttgat agctatattt tttctatgta tagggcttga gttaaaatat gaaattttac
      721 gtgggcaact taaaaatata agagctgtat ctttacctat atttggagct ttagggggta
      781 tgattactcc ggctttaatt tttattgcta ttaattattc tcatgatttt gctatgaaag
      841 gttgggcaat acctacagca actgatatag cttttgcagt gggtatttta atgcttttgg
      901 gaaataaaat tcctacaagt ttaaaacttt ttttactctc tttagctatt tttgatgatt
      961 tgggtgctat tgttattatt gctttgtttt atacagatca gctttcagct ttagcaatta
     1021 ttatttgttt gttttgtata tttgctctgc ttttgttaaa ttattatcac atcacccatc
     1081 tttctttgta cgtgttggta ggtgttgtgt tgtggatagc tatgcttaaa agtggagtgc
     1141 atgcaacttt ggctggtgta atcatttctt tgtttatacc tcttgataca aaaaataaaa
     1201 aaccttattt acatgaagtt cttaaggatt taaatccttg ggtagtttat tttattttac
     1261 ctttatttgc ttttgccaat gctggaattg atattagaga tatgcatctt ggttcagtat
     1321 tttctcctgt aagtcttggg attattttag gactattttt aggaaaacaa ttaggtgttt
     1381 tcactttttg ttttattgct atcaaactta aacttgcaaa attacctgaa aatattaaat
     1441 atggaaaatt ttatggtata tgtattttaa caggcatcgg ttttacgatg agcttgttta
     1501 ttgatggttt ggcttataaa aatagtgata tttttgaata tgcggataaa cttgctattt
     1561 tagtagctag ttttttaagt gccattgttg gttttattta tcttaagatt gttaaatgaa
     1621 taatatagta cataaattaa aaactttagt tttaaatgag gcttttggcg gcgttttact
     1681 tatagtttgt actttgcttg ctttgcttgt gcaaaatgga tcttttagcg aacattatcg
     1741 agaatttcta aatttaaaag tcggatttag tgtaggtgaa tttgagctta ataagccttt
     1801 tttactttgg ataaatgatg ggcttatatc tatatttttc tttgctatag ggcttgagct
     1861 taaaaaggaa tttttgcatg gggattttaa aaatcctaaa aatattgttt taccttttat
     1921 ggctgcttta gggggtatac ttatacctgc gatgttgttt gctttggtaa atataggaga
     1981 tgcttatact ttaaaaggtt gggctatacc tacagccaca gatacagcgt ttgccttagc
     2041 gattttaatg atgtgtggca agcacattcc atcaagttta aaaattttct tactttcttt
     2101 ggctattttt gatgatgtgg gtgctatttt aattatagct attttttata cgacaaaatt
     2161 atcaatagtt gcttttgtcg ttgcaggact tgctattttg gtaatgctta ttttaaatct
     2221 tttagggata acaagaaagt ctttttattt tatttgctca gttattcttt ggattagtgt
     2281 tttaaaaagt ggagtacatg caactttagc tggaattgta acagcatttt ttataccgat
     2341 gcaaactaaa aatggggaag catttttaga agaaatttat gaaagcttaa aattttggat
     2401 tgcttttatt attttacctt tatttgcttt tgctaacgct ggagtaaatt tatccaatat
     2461 cgatatagga gcaatttttt caggtgtaag tataggtatt ttcttagggc tttttgtggg
     2521 taaacaagtg ggtgtatttt tattttctta tttggcaatc cgctttaaat ttgcagcttt
     2581 gccccaaggt tcaaatttga aacaacttta tggggtttgc atacttacag gaattggttt
     2641 tacaatgagt ttgttcattg atggattggc gtatgaagtt agtgatattt ttaattatgc
     2701 agataactta gctattctta tagcctcatt ttgttctggg atttggggtt ttatttatct
     2761 taaattcttt actactcgat cttaagggga ttgatgaggc atattttttt tattattacg
     2821 attatatttt ttataagtgg atgtagtttt tatcagaatc taaactatcg tcctagttac
     2881 aacacaaata aagaagcaag gctcaaggtt attgcaaatg aatggaaaaa aaccccttat
     2941 gttttaggtg gaactagtaa aaaaggtgct gattgttcag gatttacaca gagcgcatta
     3001 gctcagctta atatacgcat acctcgcact acaaaaactc aattaggttc tggaagaaaa
     3061 gtttctaaat caaaattgca aacaggagat ttggtatttt ttaagacagg tagagggcca
     3121 aatggtatgc atgttggtat ttatatgagc aagggaaaat ttatacattt atctactaaa
     3181 gatggagtaa aagaagtcga gctaaatagt tcttattgga aggctcgtta tataggagca
     3241 agaaggtatt aaagtgaaaa taggtgtatt tgatagcgga gtaggagggc ttagtgtttt
     3301 aaaatctctc tatgaagcta ggctttttga tgaaattatc tattatggag ataccgcaag
     3361 agttccttat ggagtgaaag ataaagatac tattataaag ttctgtcttg aagcattgga
     3421 tttttttgaa caatttcaaa ttgatatgct tatcattgca tgtaatactg ctagtgctta
     3481 tgctttagat gctttaagag caaaagcaca ttttccagta tatggcgtaa ttgatgcagg
     3541 ggttgaagca acgataaaag ctttgcatga taaaaataaa gaaattttag tcattgcgac
     3601 aaaagcaacc attaaatcag aagaatatca aaagcgtttg ttatctcaag gatatacaaa
     3661 tataaatgct ttagctacag ggctttttgt gcctatggtt gaagaaggta tttttgaagg
     3721 agattttttg caaagtgcta tggaatatta ttttaaaaat atcacaactc cagatgcttt
     3781 gatactcgct tgcactcatt tccctttact aggtcgttct ttaagtaagt attttggcga
     3841 taaaacaaaa ttaattcatt caggggatgc catagttgaa tttcttaaag aaagagaaaa
     3901 tatagatttg aaaaatcata aagcaaaatt acatttttat gcttcaagcg atgttaaatc
     3961 tttaaaaaat actgctaaaa tttggctaaa tttataagga aataaaatga tagaattgaa
     4021 aaaaccagat gaaatagaaa aattaagaat agcaaatcaa attgtagcaa aaactttaaa
     4081 ttttttagag catgaaatta aaataggaat gagcttaaaa caaatcgata aaatggcaga
     4141 agattatatt ttaagccttg gtgccaagcc atcatttaag ggactttatg gttttccagg
     4201 tgccatttgc acatctttaa atcaagtttg tatccatgga attccagatg ataaaattat
     4261 caaagagggt gatattttag gtcttgatgt gggaagtttg attgatgggt attatgggga
     4321 tgcagcaaga actattgcta taggagaagt tttacccact gataaagctt taatctcttg
     4381 tgctaaagat gcgttatatc atgctataga tattattcat gatggaatgc gttttaagga
     4441 actttcagct gctttaggcg aatttatcca tgcaagaggt tttgtcccgc ttcgtggata
     4501 ttgcgggcat ggtataggac gaaagcccca tggagagcct gaaattttaa actatttaga
     4561 aaaaggtgcg agtgcaaaaa gtggccctaa aattaaaaat ggaatggtgt tttgcataga
     4621 gcctatgata tgccaaaaag atggaacacc aaagcattat aatggaaaat gggatgctgg
     4681 aagtattgat gggctgaatg cggctcatta tgaacattgt gttgccgtga ttaatgggcg
     4741 tgctgaaatt ctttctatga tatgatatta aattataaaa ataatatttt tttcttaaaa
     4801 tcctaaaaat ttaaaatttt ttaataatat tgtagtaata ttctttaata agttaagtta
     4861 ctaaatgata tttttatagc agattaagtg tttttagaat aaaatgtcac atcgtattaa
     4921 actaaaacat aaatatggtt tagataattt aataaaaatt gttaaattat ctaaatatgt
     4981 attttggttt aaagagatct tttaagatct cttttgggtt aggctatttc cctccccttt
     5041 ttattcgtag cctaactctc ttttagagtc tggaaaatct ctttaagcta aaatatatta
     5101 tatttgctta aagagaacaa acgattacta ttcttattta aataaatttt taaaatccat
     5161 tgtagagtta taaattccag cattatccat agtttcgccc atggtaattg cggttgctaa
     5221 ttctgataga atgattttta tttcatctct tttatcttgt atataggcca atacaccttc
     5281 gtaattgctt gtttgaagaa ttaaaagtgg attagcaatt tcaaattcaa aaagtttttt
     5341 accaacataa acattgaaaa tatttccaaa aagagctgtt cccatgaaag agcagttttg
     5401 tataagttgt gacgctgtgg catcaagagt tcttttttgc atatcatctg aattttcatc
     5461 tattctttct agaatgcttt tttctatttt ttttaaagac atatcaagca cttgaagtgc
     5521 tcctataaaa tcatttgcat cattgatttg agagcaaatt tgatttgctt taaattcatt
     5581 cacgccctga atttcaccta agtgtttttt aaatatatct aaatcacttt tcattgttta
     5641 cctttcaaaa atattgctaa atatttaaaa agcaaaaagt gttcctaaat taggataagt
     5701 tagaatttac ccaaaaaaca atctcattgc caattttatt caaggctttt tgaaaagcat
     5761 tataggtaga gcggatatct tttttttcta ttttttcttt ggtattgaaa attttatgag
     5821 ctattatttg attgttttca agatttatga aatttacgct tatagaaatt tgagcgtagt
     5881 tttcattgtt attaagaatt tgctcaaaag agttaatcct gctttcaaga gaataatccg
     5941 cacttaaaga gcttgttgaa gaaagtaagg ttgtaaaaat attgctttgt tcaaattttg
     6001 ataaaattaa aaaagaataa agattgcttg gcaaatctcc ccagaaataa tgtgcgtatt
     6061 tgttgctaaa accattatct atataaacaa tagctcgcga gtttaaatac aaaggtgcat
     6121 ttgtattgcg aattttaaga attttaccgg tttttttaaa aaaaatattt gagtctattc
     6181 cttcgtcttt taatatgata ttttcatttt tattgatggt ttcgtgtctt aaagagcatc
     6241 cgcataacat aaaaataaaa gtcaaaatac agaataattg ctttagcatt atttttctcc
     6301 tggtccaagt ttaggtttag tttctttaaa aatcaaatca gcagggctgt tttgtaaatt
     6361 ttctattaga atattgcttt caattaaaac ccgtttaaaa agttctaaat t
//
LOCUS       DARBBO010000089         6303 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.089, whole genome shotgun sequence.
ACCESSION   DARBBO010000089 DARBBO010000000
VERSION     DARBBO010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6303)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6303)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6303
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.089"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            104..1588
                     /locus_tag="SB854_001429"
     CDS             104..1588
                     /locus_tag="SB854_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HEG0957414.1"
                     /translation="MQNKIDKITDILRRDDGISGAMHYTEQIGWILFLKFLDDYETNL
                     KDLAFLDGKDYKSILQEKFSWSVWAAPKKDGKLDVKNASSGSDLLEFVNKELFPYLKN
                     FKNNDDFKSIEYKIGGIFEFIDNRIANGHTLREVINIIDEISFNKEDEVFALGEVYEK
                     LLKDMGSDGGNSGEFYTPRPLIKTMVEVIDPKPKERIYDPSCGSCGFLVESFLHILYK
                     DRTKGKKANLSVEELEFLKNDALFGKEKTPLSYAMGVMNMILHEISSPNIIKTNTLSK
                     KITDITEKDKYEVILANPPFGGKEKEQIQENFPIKSNATELLFLQHILKSLKNNGRCA
                     IIVPEGVLFQNSNAFVSVKKDLLDDFNLECVLSLPSGVFLPYSAVKTNVLFFSKGKKC
                     ICEGDGVYYYELIPPYKLTKNKPLEYAHFKEFLKCYKERKITANSWLVSKKELEERNY
                     DLSAKNPNVKEEKILRTSEEILNSLEENLKTQQKYLNELKSILK"
     gene            complement(1668..2420)
                     /locus_tag="SB854_001430"
     CDS             complement(1668..2420)
                     /locus_tag="SB854_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEG0957415.1"
                     /translation="MQLRQKAREIFEKLLGAKKDQLFASDKEYFINHINFTFGESFVK
                     ANLDTQKYFLITLASTLAVGGKIEFKALLQGAIKNDISPIVIKEVIYQATPYVGFARV
                     CDFLSLCNKVFKKLNIALVLTPQGTTTQENRKIKGREIQNAIFSEANITKMIETTPED
                     KAFINDFLSANCFGDYYTRMGLDLKTRELLTLVYLISLGGLDNQVKAHIQGNLNMGQS
                     RKDLLNIIAALIPYIGYPKALNALNLLDDIKK"
     gene            complement(2527..2946)
                     /locus_tag="SB854_001431"
     CDS             complement(2527..2946)
                     /locus_tag="SB854_001431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEG0957416.1"
                     /translation="MQELEKAGIHGSFKGDSKFFSKNVKVSMMFKSNEWRNFSGALVE
                     FEASARSAWHTHPQGQTLIVTEGEIITKVPGQKAFIAKKGDVISCPIGVKHFHGATNT
                     SSGAHIALTGEKEGKNVEWLELVSNEEYENALKEARE"
     gene            complement(3004..4179)
                     /locus_tag="SB854_001432"
     CDS             complement(3004..4179)
                     /locus_tag="SB854_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0957417.1"
                     /translation="MKNLNKASNAQIILVFCLGVFGILSTELGMMGIIPIVSQNFSVS
                     ISDAGWCVSIFALVITFCAPIVPLLCANFNPKKLMLICLAVFILSSLTSAFVGEFWQL
                     LILRAIPAFFHPIYIALALSMVTNLVEDKKEIPKATAKIFAAVSAGMVLGVPMTSYFG
                     GNFSFKMAMLFFVFLNTLSFIATLFFVPDFKKVNSVKISKQLLILRYPLLWISILCVI
                     CINAGIWGFYSYFSDFLHSVGKMNFTLISIVLAIYGFSNIIGNYIAGKTLVKNANFTL
                     ILTPLIMIGFYILLFSFYSEIILIIFAFILGILVGVMNNGTHFMISYPFPKAANFSNG
                     LFISVANIGLSTGTAICGLVISLSDTRYIIVNTIVLLILGIIMIFVRSRIEKMKLRF"
     gene            complement(4355..4450)
                     /locus_tag="SB854_001433"
                     /pseudo
     CDS             complement(4355..4450)
                     /locus_tag="SB854_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
     gene            4554..4877
                     /locus_tag="SB854_001434"
     CDS             4554..4877
                     /locus_tag="SB854_001434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEG0957418.1"
                     /translation="MQKFLTIISAINDESRILILYHLLRYKELCVCDLQELLNMGQSR
                     LSRHLKILKDAGFLYVRRQGTWAYYGINDELLKLHLDLFENIKNLELKNAIKKNENII
                     TQICP"
     gene            complement(4885..5316)
                     /locus_tag="SB854_001435"
     CDS             complement(4885..5316)
                     /locus_tag="SB854_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEG0957419.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWVKWIEWLRISGMPIEQIKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKLHKFKG"
     gene            5395..>6303
                     /locus_tag="SB854_001436"
     CDS             5395..>6303
                     /locus_tag="SB854_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEG0957420.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKLNGDNNFFSYKLNNEERLGACTKVFAYTACI
                     TESADIINKPIYKAAFIQAIVVIIVVV"
BASE COUNT         2328 a          927 c          865 g         2183 t
ORIGIN      
        1 aatttgtgaa aatttaggaa tattagagtg tattaaaatg ggtagaagta attattatat
       61 aaatatagaa cttttaagac tttttagaaa aggaattttt taaatgcaaa ataaaatcga
      121 taaaatcaca gatattctaa gaagagatga tggcataagt ggtgctatgc actatacaga
      181 gcagattggc tggatacttt ttttaaaatt tttagatgat tatgagacaa atttaaaaga
      241 tttagcgttt ttagatggca aagattataa aagcattttg caagaaaaat ttagctggag
      301 tgtttgggca gcgcctaaaa aagatggcaa acttgatgta aaaaatgctt caagtggatc
      361 ggatttgctt gaatttgtaa ataaagagct ttttccttat cttaaaaatt ttaaaaataa
      421 tgatgatttt aaaagtatag agtataaaat cggtggaatt tttgaattta tagacaatcg
      481 catagcaaat ggacatactt taagagaagt gataaatatc attgatgaga ttagttttaa
      541 taaagaagat gaagtatttg ccttaggtga agtttatgaa aaacttctaa aagatatggg
      601 tagcgatggt ggaaatagtg gagaatttta cacccctcgt cctttgataa agactatggt
      661 ggaagtaata gatcctaaac caaaagaaag aatttatgat ccttcttgtg gtagttgtgg
      721 atttttagtt gagagttttt tacatatttt atataaagac agaaccaaag gcaaaaaagc
      781 aaatttaagc gtagaagagc ttgaattttt aaaaaatgat gctctttttg gtaaagaaaa
      841 aactccgctt agctatgcaa tgggcgttat gaatatgata cttcatgaaa tttcaagtcc
      901 aaatatcata aaaacaaata ctttaagtaa aaaaataaca gatataacag aaaaagataa
      961 atacgaagta atacttgcaa atccaccttt tggtggcaaa gaaaaagaac aaattcaaga
     1021 aaattttcct ataaaatcaa atgctactga acttttattt ttacagcaca ttttaaaatc
     1081 tttaaaaaac aacggaagat gtgcgatcat tgtgcctgaa ggtgtgcttt ttcaaaattc
     1141 aaatgccttt gtgagtgtaa aaaaagattt actagatgat tttaatttag aatgcgtttt
     1201 gagtttgcca agtggggtat ttttgcctta tagtgctgtt aagactaatg tgcttttttt
     1261 ctctaaaggt aaaaaatgta tttgtgaagg cgatggagtt tattactacg aacttatacc
     1321 gccttataaa cttactaaaa ataagccttt agaatacgca cattttaaag aatttctaaa
     1381 atgctacaaa gaaagaaaaa tcactgctaa ttcttggctt gttagcaaaa aagagcttga
     1441 agaaagaaac tatgatctaa gtgctaaaaa tccaaatgta aaagaagaaa aaatcctaag
     1501 aactagcgaa gagattttaa attctttaga agaaaatcta aaaacacaac aaaaatattt
     1561 aaatgagctt aaaagcatac taaaatgatt gcaagttttt tgataaaaac tataatttac
     1621 aaataacttc taagctcaat ttacaataaa tattcattgc ttgcattcta ctttttaata
     1681 tcatcaagca aatttagggc atttaaagct tttggataac cgatatatgg aataagagct
     1741 gcaatgatat ttagcaaatc ttttctactt tgccccatgt taagattgcc ttgtatgtga
     1801 gcttttactt gattgtctag cccaccaagt gagataagat atacaagggt taaaagctct
     1861 ctagttttta gatcaagtcc catgcgtgta tagtagtctc caaaacaatt cgcactcaaa
     1921 aaatcattta taaaagcttt atcttctggt gtagtttcta tcattttagt gatattggct
     1981 tcactaaaaa tagcattttg tatttccctg ccttttattt tgcgattttc ttgcgtagta
     2041 gtaccttgtg gagttaaaac taaggcgata tttagttttt taaacacttt attgcaaagg
     2101 cttaaaaaat cacatactct agcaaaaccc acataaggcg tagcttgata aatcacttct
     2161 ttaatgacaa taggacttat atcgttcttg attgcacctt gaagtaaagc tttaaactct
     2221 atttttccac ctactgctaa agtagaagca agggtgatta aaaaatattt ttgtgtatcc
     2281 aaatttgctt ttacaaaact ctcgccaaaa gtaaaattta tatgattgat aaaatactct
     2341 ttatcacttg caaaaagttg atcctttttt gctcctaaga gtttttcaaa aatttctctt
     2401 gctttttgtc ttaattgcat ggttttatcc tttgtggttt ttaaaatttg tgaaaaaaga
     2461 gcatttaaaa tactccaaaa acataaaagt ttttataaaa tttttgtgtt ttatttacaa
     2521 atttctttac tctcttgctt cttttaaggc attttcatat tcttcattgc taacaagctc
     2581 aagccattct acatttttac cttctttttc gcctgtaagt gctatgtgtg ctccactact
     2641 tgtattagtt gcaccatgaa aatgctttac tcctatagga cagcttatca catcgccttt
     2701 tttagctata aaggcttttt gccctggaac ttttgtgatg atttcaccct ctgttacgat
     2761 taaggtttgt ccttgaggat gagtatgcca cgcacttcta gcactggctt caaattcaac
     2821 caaagccccg ctaaaatttc tccactcatt tgatttaaac atcatagaaa cttttacatt
     2881 tttgctaaaa aatttactat cacctttaaa acttccatga attcctgctt tttctaattc
     2941 ttgcatttta cctccttttt tagtattata aaacatgaga gttactctaa gtcaagtaaa
     3001 aatttaaaat cttaatttca ttttttctat cctacttctt acaaaaatca tgataattcc
     3061 taaaatcaac aaaacaatag tatttacgat aatataacgc gtatcactca aagaaatcac
     3121 aagtccacaa atagcagttc cggtgcttaa tcctatattg gccacgctta taaaaagtcc
     3181 attgctaaaa ttagcagcct ttggaaaggg ataacttatc ataaaatgcg tgccgttatt
     3241 catcacacct actaaaattc ctaatataaa ggcaaatatt ataagtataa tttcactata
     3301 aaaactaaaa agtaaaatat aaaatcctat cataattaaa ggtgttaaaa tcaaagtaaa
     3361 atttgcgttt ttaacaaggg tctttccggc tatataattg cctataatat ttgaaaaacc
     3421 ataaatagcc aatacaatac taattaaagt aaaattcatc tttcctacac tatgtaagaa
     3481 atcagaaaaa taagagtaaa aaccccaaat tccagcattt atacaaataa cacaaagtat
     3541 gctaatccat aaaagcgggt atcttaaaat aagcaattgt ttgcttattt ttacagaatt
     3601 tactttttta aaatcaggaa caaaaaataa agttgctata aaagataagg tatttaaaaa
     3661 tacaaaaaat aacattgcca ttttaaaact aaaatttcca ccaaaataac tagtcatagg
     3721 tacacccaaa accattccag cactaactgc tgcaaaaatc ttagctgtag cttttggaat
     3781 ttctttctta tcttcgacca aatttgtaac catacttaga gcaagagcta tataaatagg
     3841 atgaaaaaaa gcaggaatag ctcttaaaat aagcaattgc caaaattcac ccacaaaagc
     3901 ggaagttaac gagcttaaga taaacacagc taaacaaata agcataagtt ttttaggatt
     3961 gaaatttgca caaagtagcg ggacaatagg ggcgcaaaaa gttatcacga gtgcaaaaat
     4021 actcacacac caacccgcat ctgaaatact tacactgaaa ttttgagaaa caataggaat
     4081 tatacccatc atccctagtt ctgtgctcaa aatcccaaat acccctaaac aaaatactag
     4141 aataatttga gcatttgaag ctttatttaa atttttcatt ttatcctttc aattaatatt
     4201 tttaaaagta taaaagatga gagtaggtct aagtcaataa cctaaaataa aaatatttat
     4261 ctatattaaa taaaatcttt agaaaaatct aaaacttcaa aataagcatt taaaagaaat
     4321 aaaagatgcc ttaaaagcat aaggcatctt ttatttatag gcttattact ccaatgcgtg
     4381 tatttttatc gcaagaatta agcactatgt ctatcatagc actagcataa tcactatagc
     4441 ttattttact caaacaaatg tttaaaataa aatttttatt tttattggtt atgattattt
     4501 taggcgtggc tatatctttt ggaattttta ttaatttaat ttaaggaaat aaaatgcaaa
     4561 aatttttaac cattatttca gcaatcaatg atgaaagtag gattttgatt ttgtatcatc
     4621 ttttaagata caaagaactt tgtgtttgtg atttacaaga acttttaaac atgggtcaat
     4681 caagactttc aagacattta aaaattttaa aagatgcagg ttttttgtat gtaaggcgtc
     4741 aaggaacttg ggcgtattat gggattaatg atgagctttt aaaactgcat ttagatcttt
     4801 ttgaaaatat taaaaattta gagcttaaaa atgctattaa aaaaaatgaa aatattatta
     4861 cccaaatttg cccttaatat aaaatcaacc cttaaactta tgcaatttat cacaaggttg
     4921 atagtcctta ctttctggat taaatccatc gacttcattt gcaagcattt cttcataaat
     4981 ttttatcttt ttgcttaaaa ctttttcact ttcttttaat gttttgatct ggttttgtaa
     5041 ttttttcttt gtttgcttta acatctcttg tctttcttta gcagttttta tacccaaaga
     5101 gcaaagtttt atataatgtt tgatttgttc tattggcata cctgaaattc taagccattc
     5161 tatccatttt acccattcta tatcgctttt tgaaaaatat ttcacactat tttcatcttt
     5221 ttgaacaaaa ggaaacaaac cttttttagc ccaaaatctt aaagtatgag cactaatttt
     5281 tgtttctttt tctacttttt ttatagtata agccatattt tctccttatt taagacaaaa
     5341 ataaaaattt attttatttt tttgtgataa aataatagcc aaattattag ttttatgcta
     5401 aaaataacaa agattaaaag gaaaataatg aatagtatta aaatcaaact ttccctcatt
     5461 gcaaatttaa ttgcaatttt tgccttaatt gttctaggta ttgtaagttt ttattttaca
     5521 aaaacctcac tatatgaaag cactcttaaa aatcaaactg acctacttaa agtcacacaa
     5581 tctaccgttg aagatttccg ttccacaaat caatctttta ctagagcttt agaaaaagat
     5641 atcgcgaact taccttatca atctttaatc actgaagaaa atattattaa caatgttggt
     5701 ccaatattga aatattatcg tcatagtata aatgcactaa atgtttattt aggtttaaac
     5761 aatggaaaag ttttacttag tcaaaaatct aatgatgcaa aaatgcctga attacgtgat
     5821 gatttagata taaagacaaa agattggtat caagaagctt taaaaacaaa tgatattttt
     5881 gttacaccag catatttaga tacagtttta aaacaatatg taataacgta ttctaaagct
     5941 atttataaag atggtaaaat cataggggta ctgggtgtcg atataccatc agaagatttg
     6001 caaaatttag ttgcaaaaac ccctggaaat acttttttat ttgatcaaaa aaataaaata
     6061 tttgcagcaa ccaataaaga attattaaat ccatccattg atcattctcc tgttctaaat
     6121 gcatataaac tcaatggtga taacaacttc ttctcttata agttaaataa tgaagaaaga
     6181 cttggagctt gtactaaagt ctttgcttat acagcttgta ttaccgaaag cgctgatatt
     6241 ataaataaac ctatttataa agctgcattt attcaagcca ttgttgtcat tattgtagta
     6301 gta
//
LOCUS       DARBBO010000090         6250 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.090, whole genome shotgun sequence.
ACCESSION   DARBBO010000090 DARBBO010000000
VERSION     DARBBO010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6250)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6250)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6250
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.090"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            187..2109
                     /locus_tag="SB854_001437"
     CDS             187..2109
                     /locus_tag="SB854_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEG0957421.1"
                     /translation="MIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQN
                     SDKLLLPVENLYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAA
                     KRSLVQAKKITVDLNRQADFIASAGFVYTSDQDKACHEILQDFQSGKVMDRLLSGDVG
                     FGKTEVAMNAIYSVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSS
                     AEKKQVLQNLKENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNS
                     HILSMSATPIPRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELR
                     RGGQIFYIHNHIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLL
                     LSTSIVESGIDLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAIT
                     KDALKRLVSLESNSFLGAGSILAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLED
                     ELNALSKNEVDQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIE
                     SEIEDRFGKLDIYTKQFLSLITIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSK
                     DDDDILEAILTHLRKA"
     gene            2111..2872
                     /locus_tag="SB854_001438"
     CDS             2111..2872
                     /locus_tag="SB854_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0957422.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPIALKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKEQGLRLVELNKEDLFALADIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     ITDNLDTQITHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            2869..3555
                     /locus_tag="SB854_001439"
     CDS             2869..3555
                     /locus_tag="SB854_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEG0957423.1"
                     /translation="MTGAQIFTKLLNLDLNYHDFDWLENQGLSEFELLISVVLTQNTN
                     WKNVLKALENLKKENIASLEQINTLSNLELATLIKPSGFYNTKTKRLKGLVESIINTY
                     ENLENFKTNASREWLLNIKGLGFESVDGILNYLCKREILVVDSYSLRLAFCLGYEFEN
                     YEELREFFQSGVESEQENLCKILEKKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            3552..4364
                     /gene="thiD"
                     /locus_tag="SB854_001440"
     CDS             3552..4364
                     /gene="thiD"
                     /locus_tag="SB854_001440"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEG0957424.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIAPKATKIGMIGSCELMSCVAKNLSKF
                     KPQNIVIDPVMFAKNGYALMPQENCDFFKQTIVKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGAKAVLLKGGHSEENANDVLYDGKEIHILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFHAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            4354..4986
                     /gene="thiE"
                     /locus_tag="SB854_001441"
     CDS             4354..4986
                     /gene="thiE"
                     /locus_tag="SB854_001441"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEG0957425.1"
                     /translation="MKNKLDLSLYLVATKGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKSYKIPFLINDRVDIALALDADGVHLGQEDLEAKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGVNYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGIDKEALVELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLSLK"
     gene            4964..5593
                     /locus_tag="SB854_001442"
     CDS             4964..5593
                     /locus_tag="SB854_001442"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEG0957426.1"
                     /translation="MKIYLLNETPFEGVENLILNEIVFYDFSVDLSLYDALICTSKNA
                     LKALQHAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKMQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEMIVYENVFKKGDKKLIYPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLDCVKLAKTLV"
     gene            complement(5590..6042)
                     /locus_tag="SB854_001443"
     CDS             complement(5590..6042)
                     /locus_tag="SB854_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957427.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQAKQENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLSKDGVIIAHISIALNRDKNVNDEILLTKSIIIYPKENFWNLKN"
     gene            complement(6039..>6250)
                     /locus_tag="SB854_001444"
     CDS             complement(6039..>6250)
                     /locus_tag="SB854_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957428.1"
                     /translation="GSFIPLQAQLVIKLQNEELIYEIKPKFNEQLNQQGLISKNISSF
                     NLQNNKLKICLKRQTKHCLEKRILL"
BASE COUNT         2262 a          720 c         1164 g         2104 t
ORIGIN      
        1 tttcataaaa ataaaaaaat cacactttta gctaaaaacg aagctttatt taaagcttta
       61 gagcttgaag atactcaaaa tatccatttt ataaaaagtg atttaagact taatcttatt
      121 agtcctgaag agctaatcat ttctttaaat caaaaagaaa aacaaaaaac aagaaaaaaa
      181 gctagtttga ttatagatga gcttaaaaat ggggattata tagtacacga agattatggg
      241 gtaggtaaat ttttaggtct tgagatgata gtgataagcg gagcaaaaaa agagtttgtt
      301 gctatagagt atcaaaattc tgacaagctt ttattaccag tggaaaatct ttatttgatt
      361 gataaatatt tgggcgtgag tggatctatt ccaagcttag ataaactagg taaaacaagc
      421 tttattaaac ttaaagaaaa attaaaaact aaacttttag ccatagcttc tgaaattgtt
      481 attatggcgg ctaaaagatc tttggtgcaa gcaaaaaaaa ttacagtgga tttaaataga
      541 caagctgatt ttatagctag tgcgggtttt gtttatacaa gtgatcaaga taaagcctgt
      601 catgaaattt tgcaagattt tcaaagtgga aaagtcatgg ataggctttt aagcggtgat
      661 gtgggttttg gaaaaactga agttgctatg aatgctattt actcagtagt taaaagtgga
      721 ttttgcgcat ttttatttgc gcctacgact ttgctttctc atcagcatta taaaacctta
      781 aaaaagcgtt ttgatccttt tgatataaag gtttttaaac tggatcgctt tacaagtagt
      841 gcagaaaaaa aacaagtttt acaaaattta aaagaaaata aagcttgtgt agttgtagga
      901 actcatgcac ttttaagtgt agaatgtgaa aatttagccc ttgttattat tgatgaagag
      961 cataaatttg gagtgaagca aaaagaaaag cttaaagaaa tcactcaaaa ttcacatatt
     1021 ttatccatgt cagcaacccc tataccaaga agcttaaatc aagctttaag ttctataaaa
     1081 tcttatagtg ttttgcaaac tccaccagaa gatagaatgg atgtaagaac ttttgtcaaa
     1141 gaaaatgatg acgcactttt aaaagaagct atagcaagag agttaagacg tggtgggcaa
     1201 attttttata ttcataatca tattgcaagt atagagcaat gtaaaaagca tttattagaa
     1261 cttttttcta ctttgcgtat tttgatttta cattctaaaa tcgatgccaa gatgcaagaa
     1321 gaagaaatgt tgaaatttga aaacaaagaa tatgatttgc ttttaagtac ctctatcgta
     1381 gaaagtggga ttgatttacc aaatgcaaat actatcatag tagaaaaaag cgatcgtttt
     1441 ggcatggctg atttgcatca attgcgtggg cgtgtaggaa gaagtgataa gcaaggttat
     1501 tgttattttt taattgaaga taaaaatgct atcacaaaag atgctttaaa gcgtctagtt
     1561 tccttagaaa gtaattcttt tttaggcgca ggttctattt tggcttatca tgatcttgaa
     1621 attcgtggcg gtggaaattt attaggcgta gatcaaagtg gacatattga gcaaattgga
     1681 tatagtttat atcttaaaat gttagaagat gaacttaatg ctttaagtaa aaatgaagtg
     1741 gatcaaaaag aaaataaact tgatttaaaa ctcaatgtta atgccttttt aaacagcgaa
     1801 cttatcagcg aagatcgctt aagattagaa ctttatagaa gacttagcaa gtgtgagcaa
     1861 gttcatgagg tttatgagat tgaaagtgaa attgaagatc gctttggaaa acttgacatt
     1921 tatactaagc aatttttatc tttgattact attaaaattt tagctttaaa taaatttaaa
     1981 agcattagta actatgagca aaatattcaa tttactgctt taaatgatga aaaagaactc
     2041 atcaaggcaa aaagcaaaga tgatgatgat attttagagg caattttaac gcatttaaga
     2101 aaggcttaaa atggattgga ataaaactta tgcagcaatt tatagagcaa gaaaagatta
     2161 tttaaagcct atttttgaaa tcgatcctat tgctttaaaa gatttagtag gtatggaaag
     2221 tcaaaaaaaa gcactttatg aaaatacttt aaatttcatt caagataagg gagcaaatca
     2281 cgcactttta tggggatcta agggcactgg aaaatcaagt ttaattaaag ctatatttaa
     2341 tgaatttaaa gaacagggct taagacttgt cgaattaaat aaagaagatt tatttgcctt
     2401 agcagatatc atcgatgaaa tcagattaga aaattttaaa ttcatacttt tttgtgatga
     2461 tttttctttt gaaaagggag atgatagtta taaattttta aaacctttac ttgagggaag
     2521 catagaaaaa gccccaaata atgtaattat ttatgcgagt tcaaatcgta ggcatttatt
     2581 aagtgaaagc attactgata atcttgatac gcaaatcaca catacagaac ttcatttaag
     2641 cgatgctgct gaagaaagat taagtttgag tgatagattt ggtttgtggt taagttttta
     2701 tcagggaaat ttagaagagt atttaaagat gatagatttt tattttaaag attattcttg
     2761 tgataaagag cttttgcacg ctaaagctaa agaatttgct actctaagag caagtagaag
     2821 tggtcgtacc gcaaagcaat tttatttagc ttttaaggag aattttaaat gactggagca
     2881 caaattttta ccaagctttt aaatttggat ttaaattatc atgattttga ttggcttgaa
     2941 aatcaaggat tgagtgaatt tgagctttta atttctgtcg ttttaactca aaatacaaat
     3001 tggaaaaatg tcttaaaagc tttagaaaat ttaaaaaaag aaaatattgc aagcttagaa
     3061 caaatcaata ctttatccaa tttagaactt gcaactttaa ttaagcctag cggattttat
     3121 aataccaaaa ctaagcgttt aaaaggtttg gtagaaagta tcataaacac ttatgaaaat
     3181 ttagaaaatt ttaaaacaaa tgcaagcaga gaatggcttt taaatatcaa aggtttgggt
     3241 tttgaaagtg ttgatggtat tttaaactat ctttgcaaaa gagagatttt ggttgtagat
     3301 agttatagct tgcgtttggc tttttgcttg ggttatgagt ttgaaaatta tgaagaatta
     3361 agagaatttt ttcaaagtgg tgtagagagt gagcaagaaa atttgtgtaa aattttagaa
     3421 aaaaaatgtg aactttacga actttatcaa atttttcatg ctttgattgt agcttttgca
     3481 aaacagagtt ttaaaggaca aaaattaagc cctaagggtg aagaatggat caaaatttta
     3541 aaggaagatt tatgaaagca aaaggaagcg aacttatacc tgttttaact atagcaggga
     3601 gtgattgtag tggtggagcg gggatacaag ccgatcttaa aacctttagt gcgcacaatc
     3661 tttttggtat gagtgtggtt ttaagtgtgg tagctgaaaa tactgcaagg gtgatttctg
     3721 tacacgatat acctactcaa agcgtggatg aacaaatgct tgccgtgttt gaagatatag
     3781 cgccaaaggc aactaaaatc ggaatgatag gttcttgtga attaatgagc tgtgtagcta
     3841 aaaatttaag caagtttaaa cctcaaaata tagtgattga tcctgtaatg tttgccaaaa
     3901 atggctatgc tttaatgcct caagaaaatt gtgatttttt caaacaaacc atagtaaaat
     3961 ttgcagacat tcttacgcct aatattcctg aagcagagtt tttatgcggt tttaagattg
     4021 ctaatgaaga gcagatgata aaagcagcta agcatttatg cagcttgggg gctaaggctg
     4081 ttttgcttaa aggtgggcat agtgaagaaa atgccaatga tgtgctttac gatggaaaag
     4141 aaattcatat tttaaaaggc gaacgcatag aaaccaaaaa tactcacggt acaggttgta
     4201 cgctttcttc ggctattgct agtaatttag ctaagggcaa ggatttattt cacgccgtta
     4261 gtgaagctaa agaatatgta agaaatgcga tttattattc actcaatctt ggaaaaggtt
     4321 gtggtcctac aaatcatttt ttcaagtttt tagatgaaaa ataaattaga tcttagtctt
     4381 tatctagttg ctactaaggg aaataaaagc gaggagtgtt ttttaaatac tttagaaaat
     4441 gctataaaag gcggagtaag tataatacaa cttcgtgaaa aagaacttaa tgcaagagaa
     4501 ttttataaac taggcttaaa ggtgcaaaaa ctttgcaagt cttataaaat accttttttg
     4561 attaacgata gggtggatat agctttagcc ttagatgctg atggggtgca tttaggacag
     4621 gaagatttag aagcaaaatt agctagaaag cttttaggag atgaaaaaat cataggctta
     4681 agtcttaaaa agttagaaca acttgagttt atacaaggag taaattatct aggttgtgga
     4741 gctattaagg caacgcctac taaagaaagt tcgcttttaa gccttgagct tttaagtcaa
     4801 atttgtgata aaagccctat aggggttgta gccataggtg ggattgacaa agaagcactt
     4861 gttgagttaa agggtataaa tttaagcggt gtggctgtgg ttagggcgat catggatgct
     4921 aaagatgctt ttttggcagc taaagagcta aagcgtaaaa tctatgaaaa tttatctctt
     4981 aaatgaaact ccttttgaag gggtggaaaa tcttatttta aatgagattg ttttttatga
     5041 ttttagtgtg gatttgagtt tgtatgatgc tttaatctgc acttcaaaaa atgctttaaa
     5101 agctttacaa catgcaaaaa tcactttaaa tttcaaactc aatttatacg ctgtgggaca
     5161 aagtacagct caatacgcta aaaatttagg ttttaaaaag attaaaattc catcaaaggc
     5221 ttatggaaaa gatctttttc ttgaatttaa agaggagtta aaaatgcaaa aatgtttgta
     5281 tttaagggct aaaaatattg tttcaacttt aaatttggat cttaaaaatg taggtgtgga
     5341 tttagatgaa atgattgttt atgaaaatgt ttttaaaaaa ggcgacaaaa agcttatcta
     5401 tcctgctatt tttatattca cctctccttt aagtgtagaa aattttttaa aattttatag
     5461 cttaaaagaa gaagataagg ttgtagttat agggcaaagc acagcaaaga agcttttaaa
     5521 ttttaaaaat ctttatatat gcgaaaatca aagtctttta gactgtgtta agctcgctaa
     5581 gactttggtt taatttttta aattccaaaa attttctttg ggataaataa taatgctttt
     5641 tgtgagtaaa atttcatcat tgacgttttt atcacgattt aaagcaatac taatgtgggc
     5701 tataataaca ccatctttgc ttaaatttgc atcgggattg aagttggaaa atttaaaatt
     5761 aacacattgt gcaataggat aaaaatattt tattttaatc aaagcttttg tgtaattaaa
     5821 atatatattg tctaaacatt ctttattttc ttgctttgct tgatataaaa aatatttaga
     5881 aaattgtgtt gcattgtgac ttaaaatttg agcttgaagg tagtaataac tatcttggat
     5941 tatttttgga gtatagctgg atatgtttaa ggtcaagctc atccatagac ttattagtag
     6001 tattaaaaaa attgtccaaa ttaaaacata agcttttttc acagtaaaat tcttttttca
     6061 aggcaatgtt ttgtttgtct ttttaggcaa atttttaatt tattgttttg caggttaaat
     6121 gagcttatgt ttttagaaat taatccttgt tggtttaatt gttcattaaa ttttggcttt
     6181 atttcatata taagttcttc attttgcaat ttgataacta attgagcttg caaaggaata
     6241 aaactacctg
//
LOCUS       DARBBO010000091         6023 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.091, whole genome shotgun sequence.
ACCESSION   DARBBO010000091 DARBBO010000000
VERSION     DARBBO010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6023)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6023)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6023
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.091"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            6..668
                     /gene="flgA"
                     /locus_tag="SB854_001445"
     CDS             6..668
                     /gene="flgA"
                     /locus_tag="SB854_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation protein
                     FlgA"
                     /protein_id="HEG0957429.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKITSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNISKNAILRANMFKT
                     TALIRRNDPIIGILSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            665..1228
                     /locus_tag="SB854_001446"
     CDS             665..1228
                     /locus_tag="SB854_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEG0957430.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKAE
                     NQANLEKICQENFKYTHFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQMGVIIAPPIIASYSKANNLE
                     QMENFIVGKWLDLLEIKHNLYEKWQNF"
     gene            1268..1732
                     /gene="coaD"
                     /locus_tag="SB854_001447"
     CDS             1268..1732
                     /gene="coaD"
                     /locus_tag="SB854_001447"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEG0957431.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPYY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVTHRGDVSSLVPKEILPFLKD"
     gene            1735..2313
                     /locus_tag="SB854_001448"
     CDS             1735..2313
                     /locus_tag="SB854_001448"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEG0957432.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKTNQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISVEILTLDAKESKEKLHQQIKEFLQ"
     gene            2310..3536
                     /locus_tag="SB854_001449"
     CDS             2310..3536
                     /locus_tag="SB854_001449"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEG0957433.1"
                     /translation="MINALKGMKDLLDKDAYYYEKVIKICEEVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYYGSMFRYERPQKGRLREFHQFGVESLGIPNVYEDASIILMLVEIFSRLGIDFKLQ
                     LNSLGCSQCLPKYRDRLVEFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQNLLENAP
                     LLINNLCTSCQKDFETLQQILKDNGVKFELDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLGGKSGYGIGFAMGIERIITILEQKEEKIQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEYKVLLSYEARKLAKHLENADKNNTEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            3533..5368
                     /gene="speA"
                     /locus_tag="SB854_001450"
     CDS             3533..5368
                     /gene="speA"
                     /locus_tag="SB854_001450"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HEG0957434.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINYEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLINELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSM
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDKPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDTLEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            5369..6007
                     /gene="cysE"
                     /locus_tag="SB854_001451"
     CDS             5369..6007
                     /gene="cysE"
                     /locus_tag="SB854_001451"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEG0957435.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRIFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQPESQK"
BASE COUNT         2244 a          848 c         1053 g         1878 t
ORIGIN      
        1 taaaaatgaa aattattttt ttaacttttt ttattgtgat aaattatatc caagcagcta
       61 gtttagaaga aatcaaaaca gcactagcta aagaatttag aaataatttt cctaaaatta
      121 taatttctca aattgattta aaaataacat cattgcctaa agattttgat caatatgaat
      181 ttctaagaat cgctaatggg cgttttaatc aagcacaagg ctttttaagg gccgaattta
      241 aaactccgca aaatatacaa aaaaatgtat tttttagata tttcattcaa gcaaatttag
      301 aagttttaaa aagcgaacgc gctataaaaa gaggagataa acttggagct tttgactata
      361 aaagcgtatt gattgatttt gataaagttc ctttaaatgc cttaacctta gatgatgtag
      421 ataatcttgt agctaaaagc aatattagca aaaacgccat tttaagagca aatatgttta
      481 aaaccacagc tttaatacgc cgaaatgatc ctataatcgg gattttaagc gaagcaaatg
      541 ttgatgtttt aatcgaactt gtggctttgc aaagtgcaaa tatgggcgaa aggattcgtg
      601 caaaaaacaa agaaggtaaa gttatgcaag gcatcgtagt gggtaaaaat aggatgatta
      661 tacaatgaag gttttattag gaatttctgg ttcaagcagt gtcaatttag gcttgaaatt
      721 attaaaaaat ttagaaaacc aatgcgaact ttattgcatt ttaacccaag gtgcaaaact
      781 tagtttcaaa gctgaaaatc aagcaaattt agaaaaaatt tgtcaagaaa attttaaata
      841 cactcatttt ttagatgata aaaatttaag tctaagtgta gcaagtggat cttttggaat
      901 agaaaaaacc atcattgctc cttgttctat ttcaagttta gcaaaaattc acgctggttt
      961 tgcagacact cttttaatgc gtgctgcagc agtggcctta aaagaaagaa aaaaactcat
     1021 cttaggtgta cgtgaaatgc ctttttctac tttaaattta gaacatatgt taaaacttag
     1081 ccaaatggga gttatcatcg cccctcctat tatcgcaagt tattctaaag caaacaatct
     1141 agagcaaatg gaaaatttta tcgtaggtaa atggttagat cttttagaaa taaaacacaa
     1201 tttatatgaa aaatggcaaa atttttagtt taaatttgtt atatttttaa aaaaaattgg
     1261 agcaaaaatg acttgtttat atcctgggac ttttgatcct attaccaacg ggcatttaga
     1321 tgttataaaa cgggctttaa aaatttttga tgaagtcatc gttgccatag caaaaagtga
     1381 acataaaaaa ccttactatg atttagaaaa acgcaaagaa ctagccctgc tcgcaacaca
     1441 aaatttaaaa aatgttaaaa tcattgcttt tgataattta cttgtagatt tagccaaaga
     1501 attaaaagtc aatactataa tccgtggact tagagcagtg agtgattttg aatacgaatt
     1561 gcaaattggc tatgcaaatc acgcactttg ggaagatatg gaaaccattt atcttatgcc
     1621 aagtctaaaa catgctttta tttcaagttc tattgtgcgt tctatagtaa cacatagggg
     1681 tgatgtaagt tctcttgttc caaaagaaat tctacctttt ttaaaggatt aatcttgtat
     1741 gtagtttttg aaggtattga ctgcgtagga aaaagtacgc aaatttcact tttaaaagaa
     1801 atttacaaag acgccatttt cacactcgaa cctggcggaa cagagcttgg aaaacattta
     1861 agagaaattt tacttaataa aactcatcct attaacaaaa gagctgaact cttgcttttt
     1921 ttagctgatc gtgctcaaca ttttgaagaa atcttaaaaa ccaatcaaaa caaactcatt
     1981 attagcgata gaagttttat ttcaggcatg gcttatgcca aagattttga aaacgatttg
     2041 ctttttgctt taaatagttt tgctttagaa aatttttttc cacaaaaaat tatcttttta
     2101 aaaggagatg caaaccttat ccaagaacgc ctcagtcaaa aagaactaga tagtatagaa
     2161 aaacgtggca ttgagtattt tttaagcgtg caagataaac tcgaaaaagt gcttcatttt
     2221 ttaaaagaaa aaatttctgt agaaatttta acacttgacg caaaagaaag taaagaaaaa
     2281 ttacaccaac aaataaagga atttttacaa tgattaacgc tttaaaagga atgaaagatt
     2341 tattagataa agatgcatat tattatgaaa aagtgattaa aatctgcgaa gaagtagcta
     2401 aaaactatgg ctttactttt atcaatacac cgcatttaga actttgcacc ctttttaaaa
     2461 gaagcgtagg agaaagttct gatatagtag gtaaagaaat gtatgaattt atcgataaag
     2521 gcgaaaatca tgtttgcatg cgtcctgaag gaactgctgg ggtggtgcgt gcctatatag
     2581 aaaaaaaact cgataaaaac actagtgtga aaagatggtt ttattatggt tctatgtttc
     2641 gttatgaaag acctcaaaag ggtcgcttaa gagaatttca tcaatttgga gttgaaagcc
     2701 ttggcatacc taatgtttat gaagatgcaa gcattatttt aatgctagta gaaattttct
     2761 cacgccttgg tattgatttt aaacttcaac ttaattcttt aggctgctca caatgcttgc
     2821 caaaataccg cgataggctc gttgaattct tagattccaa agaaggtttt tgtgaagatt
     2881 gtttgcgtag aaaaaattta aatcctattc gtgtcttaga ttgtaaaaat gagcattgtc
     2941 aaaatttgct tgaaaatgct ccgcttttga tcaataattt atgcacctct tgccaaaaag
     3001 actttgaaac actgcaacaa attttaaagg ataatggagt taaatttgag ttagattcaa
     3061 aacttgtgag gggtttggat tattattcta aaacggcttt tgaatttata agcgatgaaa
     3121 taggagcaaa ggctgctatc gcaggtggag gacgctacga tagacttata gagtatttag
     3181 gtggaaaaag tggctatggt ataggttttg ccatgggtat agaaagaatt ataactattt
     3241 tagaacaaaa agaagaaaag attcaaagag aaggaattta tctttgtgct atggatgaaa
     3301 tttatatcca aaaacttttg catatcgcta caaatttaag aaaagaatat aaagtacttt
     3361 taagctatga agcaagaaaa ctagccaaac atcttgaaaa cgcggataaa aataatactg
     3421 aaatttttct ttgcatggga gaaaatgaag cacaaaatga aagtttgttt tataaaaatt
     3481 tagcaaaaaa agaagaaaaa atgattaaaa tttcagactt aaagaaggtt ttatgatgga
     3541 ttatggtatt gatatttggg gaaatgaaaa tttcattatc aaaaatggta aagtttgtat
     3601 caattacgag aaaaaacctg ctattattga tatagttaaa gaattaagag atgatggata
     3661 caaggggcct ttacttttaa gatttcctca tcttatccaa aaacaaattg aaaatattta
     3721 cggaaatttc aataaagcaa gaaaggaatt tggctataaa ggaggattta acgctgttta
     3781 tcctttaaag gtcaatcaat accctggttt tgtaaaaaat cttgtaaaac ttggaaaaga
     3841 ctataactat ggacttgaag caggttctaa ggcagagctt ttactcgcta tggcttataa
     3901 taacgaaggc gcacctatta ccgtaaatgg ctttaaagat agagaactta tcaacatagg
     3961 ctttattgca gctgaaatgg gacataatat cactttaacc atagaaggac ttaatgaact
     4021 tgaagctatc atagacatag ctaaagaacg ctttaaacct aaaccaaata taggcttacg
     4081 tgtacgtttg cattctgctg gagttggaat ttgggcaaaa agcggtggga ttaattctaa
     4141 atttggactt acatccactg aactcataga agcggtaaat ttactcaaag aaaacaaact
     4201 tttagaacaa tttaccatga ttcactttca tctaggctca caaattaccg aaattcaccc
     4261 cttgaaaaaa gccttaaatg aagcaggaaa tatctataca gaacttagaa aaatgggagc
     4321 taaaaatcta aaagctatta atcttggtgg cggtttagct gtggaatact cacaatttaa
     4381 aaatgaaaaa agtagaaatt acaccctaag agaatacgct aacgatgtag tttttatcct
     4441 aaaaaacata gccgaacaaa aaaaagattt agagcctgat attttcatag aaagtggacg
     4501 ttttgtagca gctaatcacg ctgttttaat cgctcctgta ttagaacttt tttctcaaga
     4561 atacgcagaa aacaaactca tacttaaaaa acaaaatcca aaacttatca atgagcttta
     4621 tgatctttat aaaagtataa aaccttccaa tgctttagaa tacttgcacg atagcataga
     4681 tcatttagag agtattttaa ctctttttga tttgggctat gtggatttac aagatcgttc
     4741 caatgctgaa attttaactc atttgattac aaaaaaagcc atcttgcttt taggcgataa
     4801 gcaaaatcct gcggatttac ttgccataca agatgaagtg caagaaaggt atttggtaaa
     4861 tttttcgctc tttcaaagca tgcctgattt ttggggttta gaacagaatt tccccatcat
     4921 gccacttgat cgcttagatg aagaaccgac acgaagtgca agtatttggg atataacctg
     4981 cgatagcgat ggagaaattt catactctaa agataaacct ttatttttgc acgatgtaga
     5041 tgtagaaaaa gaaaattatt ttctagggtt ttttcttgta ggtgcctatc aagaagtact
     5101 tggaatgaaa cacaatcttt ttactcatcc tactgaagct attataagca tcaatgaaaa
     5161 aggctatgaa gtcgagggga ttatagaagc gcaatccata cttgatacct tagaagattt
     5221 agactatgat atacacgcta tcatggatat acttaatgaa cgcataagta attctaagct
     5281 tgtaaatgat aagcaaaaaa agcatatttt aggcgaactt tatcttttct taaatgataa
     5341 tggttattta aaaagcatag gagtttagat gaatttttgg ggtattataa aagaagattt
     5401 ttctcagcca aaggcacaag atccagcttt taattcttgt atagaacttt tttttaatta
     5461 ccctggagta tgggctgtag taaattaccg ctttgcacat tttttttaca taagaaattt
     5521 taaacgcatt gctagaatga ttagcggaat ttcacaattc ttaactgggg tagatttgca
     5581 ccctggagca gaacttggaa ggcgtatttt tatagatcat gccaatggag tggttatagg
     5641 tcaaacagca attatagaag atgatgtttt aatttatcaa ggcgttactt taggtggaac
     5701 aagccttgaa aaaggtacta aacgccatcc aactataaaa aaaggagtga tcataggctc
     5761 aggcgcaaaa gtacttggca atatcaccat aggagaaaat gccaaaatag gctcaaatgc
     5821 tgtagtggtt aaagatgtag gtgcaaattt aactgccgtt ggaattcctg cttatattat
     5881 cgaagagcgt aaaaataaaa atattagagc catagatgca aattgcgatg acaaactaga
     5941 aaagttagaa aagaaaattt tagaacttga aaatcttata ttaaaacaac ctgaatcaca
     6001 aaaataataa ttttttataa tac
//
LOCUS       DARBBO010000092         5941 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.092, whole genome shotgun sequence.
ACCESSION   DARBBO010000092 DARBBO010000000
VERSION     DARBBO010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5941
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.092"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..1167)
                     /locus_tag="SB854_001452"
     CDS             complement(<1..1167)
                     /locus_tag="SB854_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG0957436.1"
                     /translation="MQNLLLYIKNNLTPTLAQILLQALKNSNNEKFFTFVLENIETIC
                     TWLNSSEFKNRYLSIKHPYPPLINPNFIEIDASRHCAELAWDLNLPLPKHYKFIYISP
                     HGVGAAAFLRYLNQCCDVTCFASWVLPPDAKERYCLNYMCLNDNTITQYAINISEINL
                     PYFDKYLSLLDFNSKIICGVRDPIGILKHNWGRDWSKVLRNYPSEFNLTYDWRYYIDY
                     LAHQNHKIKIDINELQQGVFIISYLLKYFNKDNVYYLDMEEIRQSKAFDTMNLLAINF
                     NFTPPHKDKLDLFKIKEFRGYIRYLFPITLYANSKDINNTFYLNTPKNNKNFNIDKTS
                     SIPIILDRKHINHEKIDIIQEIIKNDLCNDMGVYIDKNDFKQLEQNNLLFSTIKH"
     gene            1313..2386
                     /gene="ispG"
                     /locus_tag="SB854_001453"
                     /gene_synonym="gcpE"
     CDS             1313..2386
                     /gene="ispG"
                     /locus_tag="SB854_001453"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEG0957437.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
     gene            complement(2416..3114)
                     /gene="flgH"
                     /locus_tag="SB854_001454"
     CDS             complement(2416..3114)
                     /gene="flgH"
                     /locus_tag="SB854_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HEG0957438.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNIE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            3204..4709
                     /gene="pta"
                     /locus_tag="SB854_001455"
     CDS             3204..4709
                     /gene="pta"
                     /locus_tag="SB854_001455"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEG0957439.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLKEYDFITPHRFKYELIKQSIKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDSAKLSLDLNTIRIINPLKSEYNQEFASILYEARKSKGMSLEEA
                     RKLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPSAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            4723..5913
                     /locus_tag="SB854_001456"
     CDS             4723..5913
                     /locus_tag="SB854_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEG0957440.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKIVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHRTMPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDLDPAILPFVSHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGSYFAVLPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFELNKQRISGERMINHANSKVKVLVIPTDEELEIARITEEL
                     IGKN"
BASE COUNT         2055 a          768 c         1076 g         2042 t
ORIGIN      
        1 atgtttaatt gttgaaaata aaagattgtt ttgttctaat tgtttaaaat catttttatc
       61 aatatataca cccatatcat tacatagatc gttttttata atttcttgta ttatgtctat
      121 tttttcatga ttgatatgtt ttctgtctaa aattatggga atgctagaag ttttatcaat
      181 attgaaattt ttattatttt taggagtatt aagataaaag gtgttattaa tatctttaga
      241 atttgcatag agtgtgatag gaaaaagata gcgaatataa cctctaaatt ctttaatttt
      301 aaataaatct aatttatctt tatggggggg ggtaaaatta aaatttatag caagtaaatt
      361 catagtatcg aaggcctttg attggcggat ttcttccata tcaagatagt atacattgtc
      421 tttgttaaaa tattttaata aataagagat gataaaaact ccttgttgta gttcgtttat
      481 atcgatttta attttatgat tttgatgagc aagatagtca atataataac gccaatcata
      541 agttagatta aattcagagg gatagtttct taaaacttta ctccaatctc ttccccagtt
      601 atgctttaaa attcctattg gatcgcgaac tccgcaaata attttagagt taaaatccaa
      661 taaagataga tatttatcaa aataaggtag attaatttct gatatattaa tagcatattg
      721 agtaatcgta ttgtcattta gacacatgta attaagacaa tatctttctt tggcatcagg
      781 cggtaaaacc caggaggcaa aacaagttac atcgcaacat tgattaaggt atcttaaaaa
      841 tgctgctgct ccaacgccat gtggagaaat atagataaat ttatagtgtt taggtagggg
      901 taaatttaaa tcccaagcta attctgcaca atgtcgacta gcatctattt ctataaaatt
      961 aggattgatt aaaggtggat aaggatgttt tattgataaa tatctattct taaattcgct
     1021 agaattgagc caagtgcaaa ttgtttcaat attttccaaa acaaaggtaa aaaatttttc
     1081 attattcgaa ttttttaaag cttgtaaaag aatttgagct agggttggag ttaggttatt
     1141 ttttatatag agtaaaagat tttgcatata acctctttta attgtattta atttatatat
     1201 aattcataaa tatttaaatg tcatgaaatt taaatatatt atcaaaaata aactttaatt
     1261 aaagcaataa aaagttaaaa tttgatatta aaatttttca aagagtgaag ttatggagta
     1321 taaaagattt aaaaccagac aaatcaaagt aggaaatgtt ttaataggcg gtgatgcacc
     1381 catttcagtt caatctatgc tttttactaa aacaagagat atagaaggtt ctttagaaca
     1441 aatcaatcgt ctttattttg caggagcaaa catagtgcgt ttggcgtgct tggatatggc
     1501 tgatgcaagg gctttaaaag agattaaagc taaaagtcct ctacctttaa tcgtagatat
     1561 tcattttaat cataatttgg ctgtatattg tgctgaattt atcgatggcg tgcgtataaa
     1621 tcctggcaat ataggctcta aagaaaatat taaagaagtg gtaaaagcat gtaaagaacg
     1681 gggtatccct atacgcatcg gtgtaaatca cggctccata gaaaaacaat ttagtgataa
     1741 atttggttat ggtgtcgatg ccatgctaga aagtgcgatg tataatatca agcttttaga
     1801 ggatttagac ttttttgata ttaaaatttc catgaagact tcagatgctc aaaaaactat
     1861 agaagcttat gagagattaa gaccgctttg tgattatcct tttcacttag gggtaactga
     1921 agcaggaact aaatttcata gcactgtaaa aagttctata gctttaggaa atttacttct
     1981 taaaggtata ggcgatacta tgcgtgtttc tatgacgggt gagcttgaag aagaaattcg
     2041 tgtagcaaga gcgattttgc aagatagtgg agtgcaaaaa agcggagtaa atatcatctc
     2101 atgtccaact tgcggtagga ttcaaagtga tttgttaagc gcgattaaaa tcgtagagga
     2161 aaaaaccaag catataaaag aacctttaaa tatcagtgtt atgggttgtg tagtaaatgc
     2221 tttaggtgaa gctaagggcg ctgatgtggc tatagccttt gggaaaaatc aaggacttgt
     2281 tataagacat ggtgaagttg tagctaaatt aaaagaaagt gaacttgtag atagattttt
     2341 agctgaagtt gaagatgagg ttaaaagtag ggctgtaaaa gaataaaagc caagaagcaa
     2401 ggtttaacct tgcttttaga atggccatat cgcttctata actttgctac cccaaggttt
     2461 tcttgtgctt ctatccactt caccttctgt tttataaaga attttagcat ctgctatata
     2521 tttactatct atagtattgt cttgaccgat gtcataagga cgaataacac cgcttaattg
     2581 tatgatttgt ttctctccgt tgattaaaag ctctcttgag ccttcgataa aataattacc
     2641 atttgataaa attttaatta cacgcgttga aattgtagta ttgaaacttt catttctgct
     2701 ttgcgaaccc gttcctgtgt agttgtttga actattggtt tgaaagccta tattagaata
     2761 agcattgact ttattaagag cattagctac cactcctgaa cttcctgtta aagcacctcc
     2821 gcctaaattt gaggtattag ttctacttgt tgctttatta gcttgtgtgc tttgagtggt
     2881 actttcttgt ataacaactg taactaaatc atttacattc atagcttttt tatctgaaaa
     2941 taaaggatta tcccctttgc caaaaagcga tcctggtgca ctttctatat tattactttg
     3001 ttttggtgca agttcttcta cataagcagg tggtttcatt gaaatttgcg gatcaaccgt
     3061 tgcagaacaa ccaaaaaatg caaacggtaa cacataaaat aaaacttttt tcattttcgt
     3121 cctttaaaat atgaattttt atttttcttt gttaaaatta gaaaaagcaa agagtgttcc
     3181 acatttataa attcaaggag aaaatgatgg caaatcttta tttgatgaga tctagaagtg
     3241 atgagttaaa tactattatt agtacaaatt tgcttaaaaa ttatagcaaa atttacaaaa
     3301 atatcgcaat ttattgccct gtaatataca tacatcgcgt ccctgttttg cagggttggt
     3361 tggaagaatt taatatcaat caaaccgtaa aaagtgccta tggttttacc tttagagagg
     3421 caatggagga atttagcaaa gatcctcata atttttttaa tgttatttta gaagaatacg
     3481 aagagttaaa acgcaaatac gattttgtgc ttgtaaatag tttttgcgaa tttggaatac
     3541 ttgatggatt tgatcttagt ataaaattag ctaaaaatct taatacacct attgctgcta
     3601 ttatcaatga tgaagataaa cttatagctc aaaaatattt cgatcatgct ctagatggtc
     3661 gtaattatgt tttgattaat gaaaatttta attttgaaga agtgcaaaaa cttaaagaat
     3721 atgattttat aactcctcat cgttttaaat atgaattgat taaacaaagt ataaaaaata
     3781 aaaaaaccgt tgttttgcca gaaagtaatg atgagagaat tttaaaagct gctgaaattt
     3841 tattgaaaag taaagttgtt gatcttattt tattgggtga tgaagaaaaa atcaagcaag
     3901 atagtgctaa attaagtctt gatttaaata ctatacggat tataaatcca ctcaaatcag
     3961 aatataatca agaatttgct tctattcttt atgaagcaag aaaatctaaa ggtatgagtt
     4021 tagaagaggc taggaagcta gttcaagata aaacttattt tggaacttta cttatacaca
     4081 ctggaaaagc tgatgctatg gttagtggag catcaactac tacggctgaa acgattcgcc
     4141 ctgcattaca gcttattaaa actaaagaag gtattagttc cgtttcagga attttcttta
     4201 tgggacttga agatcaagtt ttagcttttg ctgattgtgc tgtaaatcca agcccaagtg
     4261 ctgagcaact tgcaactagt gcctatgtaa gtgctatgac tgctaaatct tttggacttg
     4321 aaccaagaat agctttgctt tcttattcta gtggtgatag cggtaaagga gaaagcgtag
     4381 atcttgtaaa agaagcatta aagattgcta aagaaaaata tcctgagttg aatatagatg
     4441 gtcctatgca gtttgactgc gcttatgatc caaaaactgc agcaaagaaa atgccaaatt
     4501 ctaagatagc aggtcatgca aatgtgtata tttttcctga tcttaacgca gcaaatattt
     4561 gttacaaagc agttcaaaga actgctaatg ctttagcaat cggtcctatt ttgcaaggtc
     4621 ttaaaaaacc tgttaatgat ttaagtcgtg gatgtttggt agatgatatt gtagataccg
     4681 taattttaag tgcaatacaa gctcaataga aaggaatgat aaatgaaaat tttggtttta
     4741 aattcaggtt cttcatcgat taaatttaaa ttttttgata ataaaatcgt taaagccagt
     4801 ggattagtag aaaaaattgg agagcaaaat tcaaaggttg tattaaaaaa tactttaaat
     4861 aatgaaagtt ttgaaagaga attaacaata aataatcacg aagaaggcct tagtatagtt
     4921 aatgagcttt ttaaagaatc aggaatttta gcagatttaa atgcacttga tggctgcggt
     4981 catcgtatag ttcatggggg aagaaattta agcgagcatt gtttagtaga tgactatgtt
     5041 cttaaagaga tagatagggt tagtattttt gctcctttgc ataatcctgc gcatttagca
     5101 ggtataaaaa caatgatcaa agctgcacct agtgttgcta atgcagctat ttttgataca
     5161 gcttttcatc gcactatgcc tgattttgct tatatgtatg ctttgcctta tgatttttat
     5221 gataagcata atattagaag atatggtttt catgggactt ctcatgctta tgttagttct
     5281 agagcggcaa aatttcttca aaaagatcaa aatgaattaa atgtcatctc tgctcatctt
     5341 ggaaatggtg caagtgtatg tgctatagaa aaaggtaaga gtatggatac ttctatgggc
     5401 tttactccac ttgaaggact tattatggga acgcgttgtg gagatttaga ccctgctatt
     5461 ttaccttttg ttagtcatct taagggttta actatagaag aaatagatac actgatgaat
     5521 aaaaaaagtg gagtatatgg aatttgcggt tataatgatt ttagagatat agaaagagag
     5581 atagaacaag gtaatgataa agcacgcttg gctcttgata tgttttgtta tcgtcttgtt
     5641 aaatatatag gatcctactt tgctgtgttg ccaaaaaccg atgctattat ttttacaggt
     5701 ggtataggag aaaatgatag tttggttcga caaaaagtat gcgagagatt agctcatctt
     5761 ggtatcgagt tagattttga acttaacaaa caaaggattt cgggcgaaag aatgataaat
     5821 catgcaaatt ctaaagttaa agtgcttgtt attcctacag atgaagaatt agaaatcgct
     5881 agaattacag aagaacttat cggtaaaaat taaattttaa aaactatata aatctttcat
     5941 t
//
LOCUS       DARBBO010000093         5924 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.093, whole genome shotgun sequence.
ACCESSION   DARBBO010000093 DARBBO010000000
VERSION     DARBBO010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5924)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5924)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5924
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.093"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            108..872
                     /locus_tag="SB854_001457"
     CDS             108..872
                     /locus_tag="SB854_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HEG0957441.1"
                     /translation="MKVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKELLEHSNDI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKTLHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTHDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGGIDEFSSKNLRNFQSF"
     gene            829..2700
                     /locus_tag="SB854_001458"
     CDS             829..2700
                     /locus_tag="SB854_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HEG0957442.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNTDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTHKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPSAIEMKFSNLY
                     HDIIKKYNHLSISYKKLVKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPN
                     TNTNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
     gene            complement(2704..4341)
                     /locus_tag="SB854_001459"
     CDS             complement(2704..4341)
                     /locus_tag="SB854_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEG0957443.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(4345..5229)
                     /locus_tag="SB854_001460"
     CDS             complement(4345..5229)
                     /locus_tag="SB854_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HEG0957444.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            complement(5283..>5924)
                     /locus_tag="SB854_001461"
     CDS             complement(5283..>5924)
                     /locus_tag="SB854_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG0957445.1"
                     /translation="ENKDIKQNFFDQKLNFENLNKTQVVQNKENNANFNNNTTNKETF
                     TQEQTKTHSENVDKNSLDELNSLVKDLNKVTQNNARNITPKETLQYFSQDLKEAVDQY
                     KAPITKLSITLNPNNLGEVEVTLIQRGNNLHINFNSNANAMNLFIQNQAEFKNSLVNM
                     GFTGLEMNFSDQGKREQNQNQGKNRSGYGFKDALDGKNESEKVNLELVLAKYF"
BASE COUNT         2147 a          977 c          784 g         2016 t
ORIGIN      
        1 ataaattggt taaaatttta tacatttttt aaaatttatt tataaaaact attattttat
       61 tctctaaaaa tacgatataa aaataattta tatcgcaagg aaaaaatatg aaagttaaat
      121 ggagtagaga ttttagcatt aaaaatatgc aattagacaa acaacacgaa ctaatttttg
      181 aaattaccaa tcttgcaaat gatttagctc taaacattca agataataat acacaacaca
      241 aaaatgattt aaaacaaatt cttgtaaagc tatttcaata catcaaaatt cattttaaag
      301 atgaagaaaa atttatggaa agcattgatt ttcctttgat tgaagaacat aaaaaatctc
      361 atcaaatatt agtagaaaaa actaaagagc ttttagaaca ctcaaatgat attgtaaaaa
      421 tgtctcaaga actttccata ttaaccaaag attggatttt agatcatttt gctaatgaag
      481 atttatggat agctaatttt acaaaaaaaa ccctacacct tcaagaaatc cattatacct
      541 tagaacaata cataaaacta aaatcaatca aacaagacct aagagctgaa aaaactcatg
      601 attatatttg caattgttct ttgcgtatcc atgcagttcc acagactata catcaagagc
      661 ttgttagcaa agaaaatacc ttaaagtgcg aaaaatgtgg gcaaatttta gttcatttgg
      721 attattttga tttgaatcaa aatttcgaaa aattcaatgc tatttttgaa gatgcactac
      781 aaaatcacca tttcacgact caaaaaaatg atatgggggg ggggatagat gaattttcaa
      841 gtaaaaacct tagaaacttt caatcctttt gaaagtttaa atcatgaaca agcaaacaca
      901 gaacaaattc ttgattttag agttatagat tttaaacttc tgtgttctag tgtaaaacca
      961 gcaaaaacaa aaacttatga aagaaaggat tttgacttat tttatgcaga tgattttttt
     1021 gtaaaaaact acaataccat agtgcaaaaa tttcttatag aaatttaccc aaaaacccaa
     1081 agttttcctt ttacagtcaa acttagatcc aactccaacc taacccatct aaaagccagt
     1141 atcaacctta cagaaaattt taaatattac cctaatttaa aatttgatat tttgcaaaat
     1201 atctacaaaa taatgatcaa acaaaaattt ttaatcttaa gacttgataa aaatttattt
     1261 gataagattg atgattttat cttatcaata caaaaaagtc catctattaa agaaatagag
     1321 cttgaaattg ccaaaggtgt agataagatt gaacataaaa gtgatgaaat tatttatcat
     1381 agagatgtta acgaagaatg ttttgacgaa aatattaact atgatgaagg aaactactgt
     1441 aaacctattg aaaaaaatga gctacttttt gaatacattt atagaattct tggaaaagaa
     1501 ggacgaaatt taagaggaga gatacttcat ttaaatccaa tagcctttct tgataatcct
     1561 tttatcataa aagatgaaag catttacaca gaagaattag aagatagaat taaatatttt
     1621 agtgccaatt atggattttt aaacaaagat catacaggat attgtatcgc aaataattta
     1681 aaattatcac aaatagggct taaaacaact ggttcaatca aaacaaatac cgatgaaaat
     1741 ataaacttag aaatcactaa ttttgatata agtgatgatg ctattaaatc aggtattgta
     1801 aatgttcaag cttcaaatat aaaagtaaat gggaatgttg gagcaacaaa actttatgga
     1861 aaaaatatca gtatcaaagg cttaactcat gcaaaaagcg aaatttttgc acaagatatt
     1921 tttattacaa cacacaaagg aactttgcaa gctgacactg tatatataaa aaatttagaa
     1981 aatgggacaa ttatagctaa aaatgtattt gttgaaaact gcatgggtgg aaaaatagaa
     2041 gcagaaaata tttatatttg caatttacta acggataata ctttatatcc aagaaaaaat
     2101 ctaatcataa caaacaatat aaaatttaaa aacaatatcg tagtttcacc actagtttct
     2161 attgaaaaca actcagatac agaatgcgaa aatcttaaaa atctaagcct taaaataaaa
     2221 agtaagcttg atgacaccat aagcaaaatg caaaattact atgattatct aatcaaaaat
     2281 caaatcaaaa tcatcaaact tcaaaagact aaaaatccta gcgccataga aatgaaattt
     2341 tcaaatcttt atcacgatat cataaaaaaa tacaatcatc ttagcatttc gtataaaaaa
     2401 cttgtaaaat taaaatatca aattgatgcg aaattaaatt tcttaaatga aatggtttac
     2461 aatgtaaaaa tatacataaa agccgaaaat atcggagagg ataatttttt aaaattttat
     2521 cctaacacaa acaccaacct tgaactaaaa catcatataa atttaaaaga ctatgaaaag
     2581 gttttatatc ttgaaaaagg acagcaagta agttatatta aatcaagcca taattatagc
     2641 gaaagcgaca tagaagaaat taaaattatt tttgaaaaat tagaaaaaga taattcctaa
     2701 gaattatctt ttcatattaa tggctttttg tatcatctga tcacttgtag tgatactttt
     2761 tgagcttgca tcaaaggctt tttgagttac gataaggttt gaaagctctg cgcttaaatc
     2821 aacatttgat tgttctaaga atccgccttt aaatttagct gtattaacaa cttgaccatc
     2881 tttcataata aaacttgcat caccgctatt tgccgttgct gcaaaaatat tatctcccat
     2941 agcaactaat ccttgctcat tgataaaatt atataaagca agctttccaa ctatggcatt
     3001 tttaccattg ctaaattgcg caacaatact tccatcatcg gatatattat attgttcaaa
     3061 aaacccttca gctacaccat cttgttgtgt aactacattt ttttcgacgc cttgtttaat
     3121 ataaatccca ctataacccg aaccaggctt gttagcatca taaggagaac ctaaatcaat
     3181 attaattgtt ccaccatttg gatttgcaat gcttgtaata ttgttttgaa gcaaagcacc
     3241 atttttatca aaaaccatat ttccttcagt cggattgcct acggcattgc cattagaatc
     3301 ataaatttgt gcaatagctt tatattgtat attatcgcct tcttgcggta aaactctttc
     3361 aagtgtaacc cttaaagtgc ttttacttcc atctgcatta taaatagggg attctaaaat
     3421 atctttattg gctttttgtt gctctgttga aatttgagct gtatcaagct tgatgctatt
     3481 ttcatccaat ccttttaaat caagctcgtt acttttaaaa tttagatttt catctaaagt
     3541 cgcttcaaag cttgttttta cgccattatc atcagtgaaa tttaaaataa tcctatcacc
     3601 cgctttagca ctaaacacat cttctttgct aacactacca ctaactacat attttccatc
     3661 ttcagttttt gtaatgttaa atttactagg atcaagatct actttaacta cttctgttgt
     3721 tgtgttagta tttaaacttc cactccattt tacattttga gttacttgag gaggtaaata
     3781 catattcaca ggtactttaa tagccccttg agaagcggtt gtgcctatac tgaaagaatt
     3841 atttgaattt acagtaaaac cattatttac cggagttcct gtgttaagat aatcccccat
     3901 aagcccagca actctatcgc tatagttaat accagtaaaa gcaggattca ttgttcctaa
     3961 aacaaaattt ccataagaat ctaccaaata tccattggca tctcttctaa atgatccatt
     4021 tctagtatag taagcattgc catcagcccc taaaacccca aaaaatcctt ttccttgcaa
     4081 agccacatca aattcgccat cacttgcaac aggagaaccc tgttcgaaaa caacttgaga
     4141 agatgctgca ccgctaccat aaccaccttg agcagggttg gttgattggg ttgttatggt
     4201 agtataaaaa atatctttaa attgagcatc agagtattta aagcccgtgg tattgacatt
     4261 tgctatgtta ttagcagtga tatcaatacc aaagctattg ctttttactc cagaaatccc
     4321 attataaaat gaattcatca tggcttatgc cttttcctct ttgtcgccat cttctgtaga
     4381 tccagaccca gaagaatctc catcgcttga accaccactt gagtctccac ttgaaccgct
     4441 tcctccagta gatgaagatg aaccaagctt ataatctgtt atttcttgta ttgcatcaaa
     4501 aggaacttct tgtccagcca tttttgcata ggcaacacca tctttaaaaa caacaccttc
     4561 gataggataa gttccgtaat ttgcagtgat tttttcacca tttttattat tataaaccat
     4621 tttaacagtg tactcaccat cacctgcata aaccccatcg ttatttcttc ctggccactc
     4681 catagtaaat aaaccttgag aaatagattt agcatcgctt ttttcactga aaacaagttt
     4741 attattgcta tcataaattt ctagcgtaac accgttttca tcagaatctt caggcaaata
     4801 cattttaaga gcgataagct catctgcacc tgtaagtttg attttattat ctgaaacagt
     4861 tgccatttta ccaatagccc ctaaagctga agtactcata cttgtactaa aagaatcaga
     4921 aagcttttgc atagtttcaa ccattttttg catagttgta ttggtatttt gctgcatttc
     4981 aagtgcacta agctgtgaag tttgagtaag cattttatcg ctatccatag gatctgttgg
     5041 atcttgatgt tgaagctcta tcaaaagaag ttttaaaaac gcatccttat ctaaggtagc
     5101 atttggattg ctcactattc ctgagctact gcttgaatct gttctagttg ttccactagt
     5161 acttcctgaa gaagtagtac ctgaagttgt agcagtggta tttaaattcc aatccgatga
     5221 tgatatcatt ataaactcct ttttatttag ttttttatta tttaagcaat aagtgttcca
     5281 atttaaaaat acttcgctaa aacaagctct agattgactt tttcactttc attttttcca
     5341 tctaaagcat ctttaaaacc atatccacta cgattttttc cttgattttg attttgctct
     5401 cttttacctt gatcactaaa attcatttca agtccagtaa atcccatatt tacaagagaa
     5461 tttttaaact cggcttgatt ttggataaac aaattcattg cattggcatt ggagttgaaa
     5521 ttgatatgaa ggttattacc tctttgtatc aaagttacct ccacttctcc aagattatta
     5581 ggatttagag tgatactaag tttagtaata ggcgctttgt attgatccac agcctctttt
     5641 aaatcttgtg aaaaatactg caaagtttct ttaggagtga tattgcgagc attgttttgt
     5701 gttactttat ttaaatcttt gactaaagaa tttaactcat ctaagctatt tttatctaca
     5761 ttttcactgt gcgtttttgt ttgctcttga gtaaaagttt ctttattagt agtattatta
     5821 ttaaaatttg cattattctc tttgttttga actacttgag ttttatttaa attttcaaaa
     5881 tttaattttt gatcaaagaa attttgtttt atatctttat tttc
//
LOCUS       DARBBO010000094         5800 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.094, whole genome shotgun sequence.
ACCESSION   DARBBO010000094 DARBBO010000000
VERSION     DARBBO010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5800)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5800)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5800
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.094"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(96..1967)
                     /gene="dnaK"
                     /locus_tag="SB854_001462"
     CDS             complement(96..1967)
                     /gene="dnaK"
                     /locus_tag="SB854_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEG0957446.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVTDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLANEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGKAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVATADKENIQKALDDL
                     REILKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
     gene            complement(1989..2519)
                     /gene="grpE"
                     /locus_tag="SB854_001463"
     CDS             complement(1989..2519)
                     /gene="grpE"
                     /locus_tag="SB854_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEG0957447.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAVNVECQDEISLKI
                     KEGVQNTLDLFLKKLEKHGVTLIKDEKEFDPNLHEAMFHVDSENHQSGEVVQVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            complement(2516..3310)
                     /locus_tag="SB854_001464"
     CDS             complement(2516..3310)
                     /locus_tag="SB854_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HEG0957448.1"
                     /translation="MMKSRDKKDLILESIIQTYLLDNAPIGSNELNSNLCIPASTIRV
                     YLKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWEKEQDKNIHIKNESFLKELSKEF
                     EIYCLVYGGRSLVLKEVLDLNTKFIVLDFEDEELVLKYEKEAWNFLQSLIGLDLSSIE
                     KIALRVHFIDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCQIHRHFKESLE
                     FEPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            complement(3611..5701)
                     /gene="cfrA"
                     /locus_tag="SB854_001465"
     CDS             complement(3611..5701)
                     /gene="cfrA"
                     /locus_tag="SB854_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent ferric enterobactin receptor
                     CfrA"
                     /protein_id="HEG0957449.1"
                     /translation="MKKICLSVCAIGLLSSNAISQNVELDSSIVSASGFTQDIKEAPA
                     TINVISKKELQSKPYRDVAEAIADIPGVDLYASKGKTGSYNITMRGITGYTLVLIDGR
                     RQGIGGEVGPNGFNEISNSFLPPISSIERIEVIKGPMSTLYGSEALGGVVNIITKKVS
                     DKWETSVSLDALLNENKDWGNTYGTSIYSSGPLMNDKLGLTLRFREFYRQQSNVEFTN
                     GSGQRVQGDQAQSPTKANNFNIGTRVSYLANNYNTFIFDIDFSRNHYDNKQGQLGTIT
                     SPGSAPGSLTGGYADIMEVDKFVTYLSHEGVYENFSITSGLQYNRVSNDGREVVGQAT
                     QPFLGENRDIVAEDIILDTKSVIPLGQSHILSAGGEYRLEKMQDKIANPTNFDQYLLA
                     IFAEDEYSIKDNLRLTFGARYNHHEIFGNNISPRAYLVYNPTDELTLKGGVSTGFRTP
                     YANRLINGAYNYSGQGRFPIYGNPDLKEETSLNYEIAAIYNNDLFYVSATGFLTNFKD
                     KISTQRYNKDNMIPGIGTCGADRCFKAINHGKVEYKGIELGAGISPLDNLNVNFAYTY
                     LDSEVKEAQDKSVIGKPEQDSLKHNIMLKTEYSFYNKFTPWIKGEWQIDRYMGDTNIN
                     REYYKDIFLASMGVRYDINKQWSINAAIYNLFNKSFTDGWESYQNSGTTTWVNTYNRI
                     EEGRRIYISINGSF"
BASE COUNT         1741 a         1140 c          760 g         2159 t
ORIGIN      
        1 taataaaaga attatatttt acagtttttg tcatttcttt aaaattttaa aaaattttca
       61 agccttttaa aaaggcttga atagagattt taagattact caacttcagc gtcgattaca
      121 tcgtcatctt ttttcttttt atcatttgct gtgtttggct catctttttt atacatattt
      181 tcggctaact tatgagaaac ttcacttaaa gctttcattt tgctttcaat ctcttctttg
      241 cttgcatttt gatttttcaa aatctcacgc aaatcatcaa gagctttttg aatattttct
      301 ttatcagcag tggcaacttt ttcacccaac tcacttaaag atttttctac ttgatgcgcc
      361 aagctatcag ctgcatttct agcatctaca gcttctttgc gttttttatc ttcttctttg
      421 tgaagttcag catcttttac catgttatta atctcttctt cgctaagtcc gcttgaacct
      481 gtgattttga tctcttgagc cttacctgtt gctttatctt ttgcactaac agttaaaata
      541 ccatttgcat cgatatcaaa agtaacttcg atttgtggca taccgcgtgg tgctggtgga
      601 attccttcaa gattaaaatt tcctaaagat ttattatcac gactaaattc tctttcccct
      661 tgtaaaacat tgatagttac agcactttga ttatcttcag cggttgagaa aacttgctct
      721 tttttagttg gaatagttgt acctttttcg ataatcttag tcattacccc gcctagagtt
      781 tctataccca aagagagcgg agtaacatca agtaaaagca catcttttac atcacctttt
      841 ataaccgcac cttgaatcgc cgcaccgata gccacaactt catcaggatt tacagactta
      901 ttaagatctt tattaaaggc ttttttcact tcttcttgca ctaaaggaac acgagtagag
      961 ccccctacca taacgatttc tttgatctca tcttttttaa gccctgcatc gcttactact
     1021 tcattgattt tagtgatggt ttcagctact aaagaatcaa tcataccttc aaatttagct
     1081 ctagtaagtt ttttaaccaa atgttttggc ccacttgcat ctgctgtgat aaatggtaaa
     1141 ttaatttcag tttcattagc tgaacttaat tcttttttag cattttctgc tgcttctttc
     1201 aagcgttgca aagccataac atcattttta agatctatgc ctgtttcatc tttaaattca
     1261 ttagctagaa aatctataag tttattatca aaatcatcac cacctaagaa agcgttacca
     1321 cctgttgcta aaacttctac tacattatcg cccgtttcaa gcacagtaac gtcaaaagtt
     1381 cccccaccta gatcataaac cacaattttt tcactatctt ttttatcaag tccgtaagct
     1441 agagctgctg aagtaggctc gttgataatt cttaatacat taagtcctgc gatagttcct
     1501 gcttcttttg ttgcttttct ttgtgcatcg ttaaaataag caggcacagt aatcaccgca
     1561 tcagtaacac tttcacccaa aaaagcttct gcatcttctt ttaatttcat caaaactttt
     1621 gctgaaattt cttgtggggt gtaaatttta cctgcgattt ctattgcgca cgcaccattt
     1681 ctttcagtga tgtggtaagg aagtctattt ttagcttctt tagccgcatc ttcattgatc
     1741 attaaaccca taattctttt gatagaataa atggtttttt cagggttggt taccgcttgg
     1801 cgttttgcac tatcgcctac taaaacttcg cctttatctg taaaagctac cactgaagga
     1861 gttgtgtttt ttccttcttt gtttgggatt actttgctct cgccgcgttc atacacagca
     1921 acacaagaat tggttgttcc taaatctata cctataactt tactcatttt ttatccttct
     1981 attaaaattt attttgctac actaactttg gttgggcgga tcacgcgatc ggctatttta
     2041 taaccttttt gaagcacttg aaccacttca ccactttgat ggttttcact atctacatga
     2101 aacattgctt cgtgtaaatt aggatcaaac tctttttcat ctttgataag agtcactcca
     2161 tgtttttcaa gtttcttaag aaataaatct aaagtatttt gcactccttc tttgattttt
     2221 aagctaattt catcttggca ttcgacatta acagctgctt ctaaagcatc taaaacatca
     2281 agcaaatcct ttgcaaagct ttcatttgca taagccatag cacttagctt ttctttttcc
     2341 attctttttt taatattttc aaattcagcg tttgcacgca tatatttgtc ttttaattca
     2401 tcatagtctt tttgcaattt gttttgctca acatcttcga tattttgcaa attctcatct
     2461 tgcaaatgtt cagaattttc tgcgttttcg ttttcaaatt cttgcttttg ctcgctcacg
     2521 ccgcctcctt tatgtattgt aatatctttt tataatccgt ataaacacta cctgctaaga
     2581 taatatttac atcttcgccc aaaaactgcg catccacctt aagccccata aaaccttctt
     2641 taaataaagg ttcaaattca agactttctt taaaatgacg gtgaatttga caatctaaga
     2701 gcttaacaaa ttcatcattt tgataaattt gataagctct ttcttcattg cttctatagc
     2761 aaatcaaatt ttgtcttaag ctagctattt tttctacaag atctataaaa tgaactctca
     2821 aagctatttt ttctatacta gaaagatcaa gccctataag actttgtaaa aaattccacg
     2881 cttctttttc gtattttaaa accagctctt catcttcaaa atcaagcact ataaatttag
     2941 tattaagatc tagtacttct ttaagtacta aacttctacc tccataaaca agacaataaa
     3001 tttcaaattc tttacttaac tctttcaaaa agctttcgtt tttgatatgg atatttttat
     3061 cttgttcttt ttcccaaaaa ctttgccaat aattttgcat cgttaaaata gtaggaattc
     3121 taccactact tatatgaagc tgagtgatca aaccctcatc gctaagtctt ttaagataaa
     3181 cgcgtatagt cgaagcaggt atacaaaggt ttgaatttaa ttcattagaa ccaataggtg
     3241 cattatccaa aagataagtt tggataatag actctaaaat caaatccttt ttatctcgac
     3301 ttttcatcat gttttccttt aaagctagca ctctattttt tgattgctag atatattata
     3361 caacattgag tgttattttg tcaagtataa atataaaaaa atatacttaa ttttatttag
     3421 tctatataac taaagtttta ttagttactt ttttataagg ataggatata tttcaagatt
     3481 ggtaaacagg gtgataatta gataagaaat tttaaataga ttcgataatt taactttttt
     3541 aaaagcacaa gatgctataa acaaaaaacc aaagaagcct ttacaagctc tttggctttt
     3601 ctatcaaagc ttaaaaacta ccattaatgg aaatatatat tcttcttcct tcttctatgc
     3661 gattgtaagt attgacccaa gtagtagtac cgctattttg ataagattcc caaccatctg
     3721 taaaactttt gttaaaaaga ttataaatag ctgcgttgat actccattgc ttattgatat
     3781 cataacgcac acccatagaa gctaaaaaga tatccttata atattcccta ttgatattag
     3841 tatcacccat atagcgatct atttgccatt cgccttttat ccaaggggtg aatttattgt
     3901 aaaagctgta ttcagttttt aacatgatat tgtgttttaa actatcttgt tcaggtttac
     3961 ctatcacact tttatcttgc gcttctttaa cctcactatc aagataagta taagcaaaat
     4021 ttacatttaa attatcaaga gggcttatcc ctgctccaag ctctatgcct ttatattcga
     4081 ccttgccatg gttgattgcc ttaaaacatc tatcagcacc acaagtacca attcctggaa
     4141 tcatattgtc tttattatat ctttgggttg aaattttatc tttaaaattt gttaaaaaac
     4201 ctgtcgcaga aacataaaac aaatcattat tgtaaatagc tgctatttca taatttaaag
     4261 atgtctcttc ttttaaatca ggatttccat atataggaaa tctaccttga ccactataat
     4321 tataagctcc atttatcaaa cgatttgcat aaggagtcct aaaacccgta gatacaccgc
     4381 cttttaaagt aagttcatca gtaggattat aaactagata agctcttggc gaaatattat
     4441 ttccaaaaat ttcatgatga ttgtatcttg ctccaaaagt caatcttaag ttatctttta
     4501 tgctgtactc atcctctgca aatattgcca ataaatactg atcaaaattg gtcggattag
     4561 ctattttatc ttgcattttt tcaagcctat attcaccacc tgcgcttaaa atatgacttt
     4621 gtcccaaagg aatgacagac ttagtatcta agataatatc ttctgcgact atatctctat
     4681 tttctcccaa aaacggctgt gtagcttgcc ctacgacttc acggccatca ttgcttaccc
     4741 tattgtattg caaaccagaa gtgatagaaa agttttcata aacaccctca tggcttaaat
     4801 aagtcacaaa tttatcaact tccataatat ctgcataacc acccgttaag ctacctggcg
     4861 cactacctgg gcttgtgatg gttcctaatt gaccctgttt gttatcgtaa tgatttcttg
     4921 aaaaatctat atcaaatata aaggtattat aattattagc caaataactg actcttgttc
     4981 ctatattaaa attatttgct tttgtgggac tttgagcttg atctccttga actctttgtc
     5041 cacttccatt tgtaaattca acattagatt gctgtctgta aaattctcta aatcgaagtg
     5101 ttagacccaa tttgtcattc atcaaaggac cactagaata aatactcgtt ccataagtat
     5161 taccccaatc tttattttca tttaaaagag catccaaact tacagaagtt tcccatttat
     5221 cacttacttt tttggtaatg atatttacca ccccgcctaa agcttcagag ccatataaag
     5281 tactcatagg accttttata acttctatcc tttctatact agaaatcgga ggcaagaaag
     5341 aatttgaaat ttcattaaaa ccattagggc ccacctctcc gccaataccc tgacgacgcc
     5401 catcaatcaa aaccaaagta tatccagtaa tacccctcat agtgatatta taagaacctg
     5461 tttttccctt gctagcatat aaatcaacgc ctgggatatc tgcgatagcc tctgcaacat
     5521 ctctataagg cttactttgt aattcttttt tactgataac attgatagta gcaggagctt
     5581 ctttaatatc ttgggtaaag ccagaagcac taacgattga gctatctagt tctacatttt
     5641 gcgatatggc attggagctt aagagaccaa tggcgcaaac tgatagacat atttttttca
     5701 tttttctcct tttgtcaaat attgatttag aaatcaaaat attatgataa taattattaa
     5761 tttaatataa attttgtatc aattgtgata attagtatta
//
LOCUS       DARBBO010000095         5755 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.095, whole genome shotgun sequence.
ACCESSION   DARBBO010000095 DARBBO010000000
VERSION     DARBBO010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5755
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.095"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            245..1222
                     /locus_tag="SB854_001466"
     CDS             245..1222
                     /locus_tag="SB854_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase"
                     /protein_id="HEG0957450.1"
                     /translation="MLKRLALLIALSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAKVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNAYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYRFRGDKILYVKIDSKGKMKILAEQ"
     gene            1223..2209
                     /locus_tag="SB854_001467"
     CDS             1223..2209
                     /locus_tag="SB854_001467"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEG0957451.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAREIEEFFENILILSHRPHGNENSRFIYALNDISQVKNY
                     KQDIKIHLKIDTGMHRNGICVENLEHAINLIQGSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSYNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKRVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGRGELVLGNGKA
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2212..2679
                     /locus_tag="SB854_001468"
     CDS             2212..2679
                     /locus_tag="SB854_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HEG0957452.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPIVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAEFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFRNFAS"
     gene            2783..4249
                     /locus_tag="SB854_001469"
     CDS             2783..4249
                     /locus_tag="SB854_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:alanine symporter family protein"
                     /protein_id="HEG0957453.1"
                     /translation="MNLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHAKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVIHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGENKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFVMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNTQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4277..5005)
                     /locus_tag="SB854_001470"
     CDS             complement(4277..5005)
                     /locus_tag="SB854_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEG0957454.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKLLLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNVANRIFFMDKGKIAVDA
                     SPKEVFENPSNERLREFLNKVLNH"
     gene            complement(4998..5741)
                     /locus_tag="SB854_001471"
     CDS             complement(4998..5741)
                     /locus_tag="SB854_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEG0957455.1"
                     /translation="MNQKNIRIFVFFVIIILWGYFSFPIEILKIQDPSGVASYGYTEN
                     AKAYLKSYLITLLLTACAVIIGVIIGFSLAILRFSKFKTLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPI
                     IFTGLVYYVSVKIFSYFAKKLELRMNKND"
BASE COUNT         1970 a          744 c          950 g         2091 t
ORIGIN      
        1 atactttctt tctttttatc atataatgta taaaaagcta aaaacaaaat gcctaaaaaa
       61 gacattccta taaaaaaatt tcttatcatt atagacaacc ttttaaaaca agcctttatg
      121 atttgtaaaa attatatcat aaataaggct gcattgttaa tataattaat attttttaag
      181 aaaaaaaata ttataatcac aaacattttt gacttaaaaa atttgaaata cctaaggaaa
      241 aacattgtta aaacgacttg ctttattaat tgcactttct tcattgatgt tgcatgcctc
      301 agatcttgtt aaaatttatc ttaatcaagg attagatgct gttggtgtag cgattgaaaa
      361 agaattaact caaaaggatt tttggttaag tgaaatagga gataaaaata tttcacttgg
      421 atactatgat gataatgttg ctatcgtgct tacaaataaa acagataaaa ttctccgtgt
      481 ttattcttac gaggacggaa aaataagaaa agattttgaa caaaaagaaa taataactgg
      541 attaatgggt gataaaaaaa tagaaggaga tttgaaaact ccagtaggtt tttatgagtt
      601 aggccgtaag tttaatccag gtgatcctta ttatggtccc tttgcttttg ccacaactta
      661 tccaaattta cttgataaag tacaaggaaa aacaggtggt ggtatttgga tccatggcta
      721 tcctttagat ggttctagac ttgatgaatt taaaacaaga gggtgtattg ctttatttaa
      781 taataatttg gagaaatttg caaaagttgt gcaagataaa aaagtttttg ttatgacaga
      841 agaaaaagaa aaaattagag ctaaaaagga tcaaatcgct agtttattgg ctgatctttt
      901 tacatggaaa ctagcttgga caaatagtga cactaatgcc tatttaagtt tttatgatga
      961 gcaagaattt aaacgttttg ataaaatgaa atttgaacag tttgcttcca tgaaaaaatc
     1021 tattttttct cgtaaagaag ataaaaagat taaattttca gatattaata tcagccctta
     1081 tccgaattta gaaaatgaaa ctatgtatag aatttcattt tatgaggatt attacactaa
     1141 aaactatcgg tttagaggcg ataaaatttt atacgttaag atagatagta aaggtaaaat
     1201 gaaaatttta gcagagcaat aaatgtcttt aataaaaatt gatcaaaaag cttatgaata
     1261 caatttaaga catattgcta aaaaaatagg gagttttcaa agattaattt gtgtttttaa
     1321 agataatgca tatggacatg gagctaagct tttagctcca ttagccaaaa atttaggagt
     1381 ttcttttgtt gctgttaaga gtgaagaaga agctcgagaa atcgaagaat tttttgagaa
     1441 tatattaata ctatcacatc gtcctcatgg taatgaaaat tctcgattta tttatgcttt
     1501 aaatgacatt tctcaagtaa aaaattacaa gcaagatata aaaatacatc taaaaataga
     1561 tacaggcatg catcgcaatg gaatttgtgt agaaaattta gagcatgcta taaatcttat
     1621 tcaaggtagt gatttaaaac ttactggaat gtttacacat tttgctagtg cagatgaaat
     1681 ggatggaagt ttttttgttc aaaaagaaaa ttttcaaaaa gctaaaaaga tagtaaaaaa
     1741 atatttttca aatttattat ttcattcgta taattctgca gcattattta gagggaaaat
     1801 tcctgaagat gaatattgta gagttgggct tgttcaattt ggatatgggg attcaaattt
     1861 aaaaagagtt ttaagtttgt atgctcatag attaagtcaa aggattttac aaaaaggaca
     1921 gagcatagga tatggaggca tttttactgc tgcaaaggat atggaagtag caacttatga
     1981 tttgggttat gctgatggtc tttttcgcta caatggaagg ggggagttag tgcttggaaa
     2041 tggaaaagca atgcttggaa agatgtcaat ggatagtttt tcttgtgaaa attctggtga
     2101 ggaaatttgc gtgtttaaag atgctgatat ttgggctgat ttttttcata ctattaacta
     2161 tgaaatttta gtaaaattaa atcctaatat tcaaagagtt ctagtataaa tatgtttaat
     2221 atagttttag ttcaccctag aataccgcaa aatacaggta gtataggtag aatgtgcttt
     2281 aatgctggtt ttaaacttca tattgttaaa ccaattgttt ttgatatttc acaaaaggct
     2341 gttagaaggg caggacttga ttactgggat aaattagagc ctattatttg ggagaatctt
     2401 gaagaatttt tgaatgaaaa tatgatttat aaaaatcgct tttttttcgc aacaactaag
     2461 agtcaaaaag cttattttga tgcagaattt caaaaaaatg atttcttatt ctttggaagt
     2521 gagagttatg gtttgcctat ggaattaatg caattaaatt gggaaaatgc tataactata
     2581 cctatgaaat cttatggaag aagtttaaat ttagccacaa gcgttggtat aatctcttat
     2641 gaagctttaa gacaaaattt tagaaatttt gcttcttaaa agtttcaaat ttacacaata
     2701 gcttaaaaca aataaaatca taaagtcctt tttataaaaa ttatgttaaa gtaaaattta
     2761 gattattttt tgaggagttt agatgaattt agatattatg ctagattttg ccaataaagc
     2821 gtctgatatt atagctaata agattgtccc aaatacagac attattatgg tagttttact
     2881 tattgtttgt gggctttatt atagtttttt aactcgcttt gttcagtttc gtatgttgag
     2941 ttctgtattt aaaattctta cagaaaaaaa cgaaggacac gctaaagaac atatttcacc
     3001 ttttcaagca ttaatgatct caactgcttc tagagttggt ataggaaata ttgctggaat
     3061 ttctttggca ttggctacag gtggagctgg tgctttattt tggatgtggg ttatggcatt
     3121 ttttggtggt gcctcagcat ttgctgaaag taccttagct caagtttaca aatcaaaaga
     3181 tgatacaggc gggtttaaag gtggtccagc ttattatata aaaaaagcct taggctcaca
     3241 tttttttgga gctttttttg cttttattct tattattact tatgcttatg gatttaatgg
     3301 acttcaaagt caaacaatga cttcgtcttt taaagtttat tatgatatgt ttaatccaaa
     3361 tgctgctgta gattttgcat caagttcttg gccaatgatt attggtattg ttttaactat
     3421 ttttggtgca tggatgtttt tttctcacca tactaaaata ggtaaaatta gttctttaat
     3481 tgttcctttt atggctttag cttatgtttt acttgccgtg attgctgttt taatgaattt
     3541 tgataaaatt ccttctgtga ttcatatgat tttacaaagt gcttttgatt ttaaagcgat
     3601 ttttggtggt tttgctggtt ctgctttggt tatagggatt aaaagaggac ttttttcaaa
     3661 tgaagcgggt atgggctcgg cacctaatgc agctgcagca gctttgacaa gtcatccagc
     3721 taaacaaggt gttatacaag ccttttcagt tttaattgat gttgttgttt gtacaagttc
     3781 tggattttta gttctttttt ctatggcata tttaggactt ggagaaaata aaattgatgg
     3841 tggaatgcct ttagttcaag aagctatgcg tgagtattac ggtagctttg gaatccattt
     3901 tattactata gctattgttc tttttgcaat aacttcttta ataggaaatt attattatgc
     3961 tcaagctaat gttaaatatt taacaaattc caaatttgta atgaatttgt ttagaattac
     4021 agctgtggct atgattttta taggctcgca aatgaattta aaacttgctt ggaatttggc
     4081 tgatttgact atggctttca tggcaacgac aaatattata tctttattgc ttttaggtgg
     4141 tatagtaaat aaagttttaa aagattttaa tacgcaacaa aaatctggta tagatcctaa
     4201 atttaatgct agcaaacttg gaattaaaaa cgctgaatgt tgggattaaa attcataagc
     4261 cttagtggct tatgaattaa tgatttaaaa ccttgtttaa aaattctctc aatctttcat
     4321 tgctaggatt ttcaaatact tctttagggc ttgcatcaac agcaattttt cctttatcca
     4381 taaaaaatat acgattggca acatttctag caaagcccat ttcatgagtt actacaagca
     4441 tagttaaacc ttcttttgca acatctttca taatgcttag aacctcgcct atcatttcag
     4501 gatctagagc tgaagtaggt tcatcaaata aaataacatc aggattcatc atcaagcttc
     4561 tagcaatagc tatgcgttgt ttttgtccac cagagagctt atggggcatt atattttctt
     4621 tgtctgctaa acccacctta gcaagaagta attttgcttt ttttatggct tcttcttgac
     4681 ttaaaattcc tgttttaatt ggtgttaaac ataaattttc cataacattt ttattagcaa
     4741 aaagattaaa atgctgaaat accatgctaa ctttttgcct gatcttatta atatcaattt
     4801 ctttatcaag tatgttttgc ttattgatta aaatttcccc actatcagct agttctaagc
     4861 gattgatgca gcgtaaaaat gtactttttc cgcctccact tggacctatg atagctatta
     4921 catcgccttt tgagattgta gtgttaatat tttttaaaac ttctaattct ccatattttt
     4981 tttgtaaatt tttaacttca atcattttta ttcatcctaa gttcaagttt ttttgcaaaa
     5041 taactaaaaa tttttacact tacataataa acaagtccag tgaaaataat aggctttgga
     5101 ttgtaaagta cggcttgcaa gctttgactt tgcatggtaa tatcaataac actaataaat
     5161 cctacaacag aagtttcctt aaataaagaa ataaattcat tagctaatgc aggtagaatg
     5221 tttttagtag cctgaggaag aataatttct ttcattgaag ttttgtaatc aagtcccatt
     5281 gctcttgcag cttccatttg tcctttatct acactattaa tgccacttct tacaatttct
     5341 gctatataag ccgagctatt aagtcctagt gcaagaatgg ctgcataaag gttgtctata
     5401 aaagtaaaaa ttacaaaagc aaaaatcatc aattgtaaaa ttaccggtgt tcctcgtata
     5461 atgtctatat attcatctat aataaaatta agtgttttaa atttagagaa gcgtaaaata
     5521 gctaagctaa aaccaataat cactccgata ataacagcac aagcagttaa taaaagcgta
     5581 ataagataac tttttaaata agcttttgca ttttctgtat agccatagct tgcaactcca
     5641 ctaggatctt gaatttttaa tatttctatc gggaaagaaa aatagcccca taaaataata
     5701 ataacaaaaa aaacaaaaat tcttatattt ttctgattca atttgtaaac ctttt
//
LOCUS       DARBBO010000096         5665 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.096, whole genome shotgun sequence.
ACCESSION   DARBBO010000096 DARBBO010000000
VERSION     DARBBO010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5665)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5665)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5665
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.096"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..167)
                     /locus_tag="SB854_001472"
     CDS             complement(<1..167)
                     /locus_tag="SB854_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEG0957456.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKANEFLNYAE
                     VITKIKTWYKK"
     gene            complement(152..760)
                     /gene="plsY"
                     /locus_tag="SB854_001473"
     CDS             complement(152..760)
                     /gene="plsY"
                     /locus_tag="SB854_001473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEG0957457.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLTLKFLHYDQALLWSVAVLAILGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVVSS
                     FIFNYDLEIHTHAPVFIIAFIIVYKHLPNIKRLIFKEECKVI"
     gene            961..1986
                     /locus_tag="SB854_001474"
     CDS             961..1986
                     /locus_tag="SB854_001474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HEG0957458.1"
                     /translation="MKVKALLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGVSTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
     gene            2080..3417
                     /locus_tag="SB854_001475"
     CDS             2080..3417
                     /locus_tag="SB854_001475"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEG0957459.1"
                     /translation="MRLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPVNLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLINLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEARDIKLLEKEMKNVVEFFKKALNG"
     gene            3410..3880
                     /locus_tag="SB854_001476"
     CDS             3410..3880
                     /locus_tag="SB854_001476"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein signal peptidase"
                     /protein_id="HEG0957460.1"
                     /translation="MAKTFKFIFCFWGAFVLVFALDQWVKSLTLAGFRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIGVLFIYLFWQRTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            3864..4316
                     /gene="hemJ"
                     /locus_tag="SB854_001477"
     CDS             3864..4316
                     /gene="hemJ"
                     /locus_tag="SB854_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HEG0957461.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEVVKIQERKLYYYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(4313..5659)
                     /locus_tag="SB854_001478"
     CDS             complement(4313..5659)
                     /locus_tag="SB854_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HEG0957462.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPEEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKNKGFDFTSMYVGGGTT
                     LIDEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQNEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFTYYQIIREFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
BASE COUNT         1909 a          745 c          950 g         2061 t
ORIGIN      
        1 tcttttttat accatgtttt aattttggta attacttctg cataatttaa aaattcattt
       61 gctttagctt taagcttgat aataattttt tgttttttcc ttctttcgaa atctaatata
      121 ccaatgatac acttaaagtg aaattttatt tttatatgac tttgcattct tctttaaaaa
      181 tcaatctttt aatattaggt agatgtttat atactataat aaaagcgata atgaaaacgg
      241 gtgcatgtgt atgaatttct aagtcataat taaatataaa agaacttaca acaaaagcaa
      301 gtaacgctgc taaagaagct aacgaagata ttttaaaaat ttttcctata actacccata
      361 caataaatgc tgtaagcact tccaatggaa gcaaaactat catagcacct gctcctgttg
      421 ctatgccttt ccctccttca aataacaagt aaattgaaaa acagtgtccc aaaatagcca
      481 aaactgccac gctccaaagc aaagcttgat cataatgaag aaatttcaag gttaataaag
      541 gaatagctgc ttttgcaaaa tctaaaatta ttgtagcaat ggcaagtttt tttgctagtt
      601 tgggattttt ttcttttact actcttaaaa cattggttgc tcctatactt tttgaacctt
      661 cttttttgat atcagtttta gcaaaaaatt tagctaggat tagcccaaaa gggattgaac
      721 ctaaaagata tataaaagcg taaattatta aattttccat aatatccttt tcaaatcatc
      781 ttaaaatttt aagatttata actaaaaatt atatcttatg aaaataaata aacaaaaata
      841 atttttatag gataaaaata gtattaatta attgtaaata ttttttaata atatttatct
      901 ttatttaagc tctaaataat tattatatta ttttaattta tctttaatag gagtttataa
      961 atgaaagtaa aagcattgct aatcgcatcc ttagttgctt tttcaagctt aaatgctgca
     1021 agtcttatag atgaagctaa aaattcaggt cttgttgcct tgccaaaaga tcaaaaaggt
     1081 gttgatgaaa ttttaaaaca aaatggagta aaggctagtg aatttactct tgaaaaagca
     1141 gagcttggca aaaagcttta ttttgaacca cgcctttcaa aaagtggtat catttcttgt
     1201 aatacctgtc acaatgtagg acttggtgga acagatgggg ttagtactgc aataggtcat
     1261 aaatggacag caaatcccca tcatttaaat tcaccaacag tttataatgc ggttttaaat
     1321 aatactcaat tttgggatgg tcgtgcagga acattagccg atcaagctaa aggtccaatc
     1381 caagctgatc ctgaaatggc aactcctgct aaactcgcag tagaaaaaat ttcatcattg
     1441 cctgaatatg tgagtgagtt taaaaaaatc tatggtaaaa gtggtgtaaa ttttgacaat
     1501 attgctgatg caattgcaaa ttttgaaaga accttgatca ctccatctcg ttttgataaa
     1561 tttttagaag gcgatgaaaa agctttaaca aaagaagagc aaaaaggctt aaagcttttt
     1621 atagacaagg gttgtgtagc ttgtcataat ggtgtgaatt taggtggcaa tatgcaagcg
     1681 tttgaagttg ctggtaaata taaatttgca aatttaggtg attttaaagg tgatgcaaat
     1741 ggcatggtaa aaactccaac tttaagaaat gttgctgaaa ctgctccata ttttcataat
     1801 ggcgctattt ggaatctaaa agatgctatt aaggaaatgg gtagtgtgca acttggcatt
     1861 aaaatttctg ataaagaagc aaaaagtatt gaaactttct taaaatcctt aacaggaaca
     1921 aaaccagcaa ttgtttatcc acaacttcct atttctactg aaaaaactcc taaacctgaa
     1981 ctataaggtt ccaaacaagc tctattttta gagcttgttt aaatttcttt atcttagctt
     2041 tgttataatt gtctttaaat tttgctagaa aggtttgcaa tgagactttt tggaactgat
     2101 ggagttcgtg gaaaagcggg tgaattttta gatagttttt tggctatgcg tttagcaatg
     2161 gctgcgggta tttattttaa agataaaagt attactaata atatcttagt aggaaaagat
     2221 acaagaagaa gtggctatat gatagaaaat gctattgttt cagggcttac ttctatagga
     2281 tataatgtta tacaaattgg tcctatgcca actcctgcga ttgcattctt aactgaagat
     2341 atgcgttgtg acgcagggat tatgatttca gcttctcaca atccttatta tgataacggt
     2401 attaaatttt ttgatgctca tggaaataaa ctcagtgaag atatagagaa aaaaatagaa
     2461 gaaatttatt ttgatgataa gcttatacaa gcctctaagg tagatatgga aaaaattggt
     2521 caagcaaaaa gaattgatga tgttatagga agatatattg tttctattaa aaattctttt
     2581 ccaaaagatc ttactttaaa gtctttgcgt gttgttttag atgtggctca tggggcagct
     2641 tataaggtag cacctactgt ttttaaggaa ttaggcgctg aagttatagt aatgagtgat
     2701 aaacctaatg gacttaatat caatgaaaat tgtggagctt tgcatcctgt aaacttagct
     2761 gctgaggtaa agcgtttgcg tgcagatgtg ggctttgctt ttgatggtga tgcagatcgt
     2821 ttggtggttg tagatgaaaa aggcgaagtg gctaatgggg atagtttatt gggtgtattg
     2881 gcactttatc ttaaagaaca aggtaaatta caatcaagtg ttgtggctac tataatgagt
     2941 aatggtgctt taaaagagtt tttaaataaa catggtatag aacttgatac ttgtaatgtt
     3001 ggcgataaat atgtgcttga aaaactaaaa gccaatggtg gaaattttgg tggagaacaa
     3061 agtgggcata ttatttttag cgattatgca aaaactggag atggtttgat agctgccttg
     3121 caatttagtg ctttaatgct ttctaagaaa aaatctgcaa gttctatttt gggtcaagtt
     3181 aaaccttatc ctcagctttt aatcaatctt aaaattgcag aaaaaaaaga tttagataaa
     3241 attaaaggtt taaaagaatt aaaaaaagat ttagaaaata aaaatattaa taccttattt
     3301 cgctattctg gaacagaaaa tttgataaga cttttactag aagccagaga tattaagctc
     3361 ttagaaaaag aaatgaaaaa tgttgtggag ttttttaaga aagctttaaa tggctaaaac
     3421 ttttaaattt attttttgtt tttggggtgc ctttgttttg gtttttgccc ttgatcaatg
     3481 ggtaaaatcc ttaactttag caggatttag atggcagagt gaatacctag atttaactta
     3541 tgctctaaat acaggcgtag ctttttcaat gttgagtttt ttagaacata atttaaaata
     3601 tttacatctt gctttaattg gcgtgctttt tatttatctt ttttggcaaa gaacactttt
     3661 aaaaactcat agcatagctt ttggaatgat gcttggtgcc ggcgtttcaa atttattgga
     3721 tcgttttata catggaggtg tagtggatat gtttttttgg cataaatggt ttaattttgc
     3781 tatttttaat gttgcagatg tcatgataaa tataagtgtg gctttgattt taatacaaga
     3841 aatatttaaa aaaaggaaaa aagatgacag aatggattaa tgattattat ttttggatta
     3901 aatgggtgca ttatttggca tttgtttctt ggatggcggg tcttttttat ttacctcgtc
     3961 tttttgtgta tcatgctgaa cataaagaca ataaaggttt tgtcgaggtt gtaaaaattc
     4021 aagaaagaaa gctttattat tatatacaaa ctcctgcaat gattgtgact ttaatcacag
     4081 gaagtttaat gttgcatgct cataaggaag ttttaatggt aggtgcgggt tttatgcatg
     4141 ttaaacttac ctgtgttaca cttttgatta tttttcatat acataattat tattgtttaa
     4201 aagctttagc aaatgatact tctactaaaa gtggaaaata ttttagaatt tataatgaat
     4261 ttccaactat aatgtttatt atcatcgctt taatgatggt tgttcgtccc ttttagtttg
     4321 tctccgcttt aaattccata ctagcggagt taagcggatc aatattttct ttcatgatat
     4381 cgatataatc tttattttta agacgcttat catctctaaa tactgcgcgc acaagatcca
     4441 ttcctgtgta aaaatctttc attaaaacca caaaaagata ttgaccaaat tcagttgcga
     4501 ttaaagcatt ttgatctttt atgatggcac cacttgtttt aagtcctaaa agttctatga
     4561 aaagttcttt ttcgagattg caatttagag ttttattaaa tttatcaatt tctattttcc
     4621 ctgaaaaaat ttcagttaaa aagacatatt tgataatttc ttttttatca aaacaagctt
     4681 tggctatatt agcattttgt ttttcttgta taaatttagc ataatcattt agattaaatg
     4741 cattgattaa aagctcccca tctaaaaagc taaaagcccc gctgcctact cctaggtatt
     4801 catgatgaga actgacatat tcgtcattaa gcttgttttt ttctaaagaa aaactccaac
     4861 cattgttttg ggtatagtct ttaaaaaatt ctcgtatgat ttgataataa gtaaattcat
     4921 tatctttaat gctcactcct agacttttag cgatattatc tttggtaaga tttgatttca
     4981 ttaaaggata ggttgtgatt tgttgcgggg ctaaattttt agcaatttct aagtcattta
     5041 aaagttgttt ttcgttttgt cctggaagat tgaaaataag atctatacta aaaataggta
     5101 aaattcctaa agcttttgaa attttttctt gaagttcttt agatgaacca aatttattat
     5161 atcttgccac ttttttcaaa gtttcatcat caaaactttg aatcccgcaa cttaaacgat
     5221 caattatacc tttaaacata gaaagcttat ttggatcaat atgatttgga tcgctttcgc
     5281 atgaaatttc ttttatatta aataactttt tacaaagttc taaggttttt aataattcct
     5341 cttcatcaat cagtgttgta ccaccaccca catacatgga ggtaaaatca aaacctttat
     5401 ttttcatgat tttaatttct tctctaagat tttgaaaata tactttggct aaattttcat
     5461 cataataata tttatgaaag ctacaataag gacaaaaagt atggcaaaaa ggtacatggg
     5521 cataaagcat atagcttttg tcttgttttg gaattttttc ttcgggttgt tttaaaagtt
     5581 cgacattgaa acctttttgg agggattttt ccatcatagt atgagagtat tttaaagcta
     5641 aattttgaaa taaattcata agtgg
//
LOCUS       DARBBO010000097         5642 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.097, whole genome shotgun sequence.
ACCESSION   DARBBO010000097 DARBBO010000000
VERSION     DARBBO010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5642)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5642)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5642
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.097"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..655
                     /locus_tag="SB854_001479"
     CDS             <1..655
                     /locus_tag="SB854_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEG0957463.1"
                     /translation="NDGYRIYKMQCLFMQQDYNQINENIKIILENRYESFFQTLLSHS
                     LGAFNDCYQDYINFNDEKYPYIFIVGFKISSFLGDLKRAQYLKLILLKNKNNTEKDLL
                     LRYLTNDCFSAVGYVKSDIRYQLGNALIKMEIIKTFQILYREKKQNKLLREHPIGNLD
                     LKSCSDYYESLECKKHLSYQLGDLILKAHQNRYKGAYFILPYKIYMLYKNFKYKKGK"
     gene            655..1200
                     /locus_tag="SB854_001480"
     CDS             655..1200
                     /locus_tag="SB854_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HEG0957464.1"
                     /translation="MAIEFDIQESKILKGVYIITPNKFRDLRGEIWTAFTSEAIDKLL
                     PNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCIYGEIHQVVVDCRKDSPTYLKHER
                     FIINQDNQQIILVPAGFGNAHYVSSESAVYYYKCAYLGEYMDAHDQFTYAWNDERIGI
                     DWPTNSPILSERDILAMSKDK"
     gene            1200..2240
                     /locus_tag="SB854_001481"
     CDS             1200..2240
                     /locus_tag="SB854_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002923011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HEG0957465.1"
                     /translation="MQKDSKIYIAGHGGTLGKTLYNTLIDEGFNNIIVKTRKELDLVD
                     QKAVTDFFAKEKPEYVFLCAAKLDTLGLFTPADVIYENSVLQANIIHSSYQNNVKKLI
                     FYGSAWAYPQKAINPIKEENLLDGKLDLKAVAYGLPKIIGTKMCESYNLQYGTNFITL
                     YLANLYGETTEFDLQKAKVLPALLRKFHLAKLLDENKIDEVLKDLQMNFLEQAMEYLQ
                     KFGVSKDSVEIWGSGSVIREFIHAKDLVDASIYVMKNIDFKDIVSSNEPHLNVGSGEF
                     LSIKELACLIKNIVGFKGEIVFNNSKPDSTMDRMLDSSRLQNLGWKAKIKLEDGIKMM
                     YEWYLKEQNIRQ"
     gene            2249..3280
                     /locus_tag="SB854_001482"
     CDS             2249..3280
                     /locus_tag="SB854_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HEG0957466.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIY
                     HLSDRINKKDRISIFYADLNDCSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIETLQ
                     TNIIGTANILENIRILKAKDGYDPVVHVCSSSEVYGKAKAGVKLNEETAFHGASPYSI
                     SKIGTDYLGRFYGEAYNIRSFVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVI
                     KVGNLSSVRTFQDCRDAIRAYYLLSLESEKGKVPCGEAFNIAGEEVFKLPEVIDILLG
                     FSTRKDIKVEQDEERLRPIDADYQMFDNTKIKRYINWKPEIPARKMFEDLLNHWRDEI
                     KKGRIPLNR"
     gene            3277..4296
                     /gene="hddA"
                     /locus_tag="SB854_001483"
     CDS             3277..4296
                     /gene="hddA"
                     /locus_tag="SB854_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HEG0957467.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCT
                     LIEREDGKIIFDSPDTNSYCEYESKEFLENDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYNNKRVIVNPLRIKNWIASELEARIVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAKILGKSWQSKKIISEIVSNDELE
                     RIYKLAIDNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALSKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            4284..4889
                     /gene="gmhA2"
                     /locus_tag="SB854_001484"
     CDS             4284..4889
                     /gene="gmhA2"
                     /locus_tag="SB854_001484"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HEG0957468.1"
                     /translation="MENLNSYIKEHFQESILVKEQILKDENLITLIKNASLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGANGGDMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            4877..5572
                     /locus_tag="SB854_001485"
     CDS             4877..5572
                     /locus_tag="SB854_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEG0957469.1"
                     /translation="MQAIILCGGLGTRLKSVIKDIPKPMAPINDKPFLEFIFEYLKKQ
                     GIKEVILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKIIKNEAYVL
                     NGDTFFGIDLSKLKLNGGKICLALKQMNDFDRYGTVNVDGLGLVISFEEKVFKKQGLI
                     NGGIYLLDKDIFKDFALQEKFSFEEFLQENYKKLKAKAHIFDDYFIDIGVPEDYYNFM
                     YKGNIDGFFTSSK"
BASE COUNT         2096 a          678 c         1065 g         1803 t
ORIGIN      
        1 taatgatgga tatagaattt ataaaatgca atgtttattt atgcaacaag attataatca
       61 gattaatgaa aatattaaaa taattttgga aaaccgttat gagtcttttt ttcaaacctt
      121 attatcacat tctttaggag cttttaatga ctgttatcaa gattatatta atttcaatga
      181 tgaaaaatat ccatatattt ttatcgtagg atttaaaatt tctagttttt taggcgacct
      241 caaaagggct caatatttaa aattgatctt gctaaaaaat aaaaacaata ctgaaaaaga
      301 cttattattg agatatttaa ctaatgattg ttttagtgct gtaggctatg ttaaatcaga
      361 tatcagatat caattaggga atgctttgat taaaatggaa attataaaaa catttcagat
      421 tttatataga gaaaaaaaac aaaataaact tcttagagaa catcctattg gaaatttaga
      481 cttaaaatct tgctcagatt attatgaatc tctagaatgt aaaaaacatc tttcttatca
      541 attaggagat ttgatactta aagctcatca aaacagatat aaaggagctt attttatttt
      601 gccttataaa atatacatgc tttataagaa ttttaaatac aaaaaaggca aataatggca
      661 atagaatttg atatacaaga atcaaaaatt ctaaaaggtg tatatattat aactcctaat
      721 aaatttagag atttaagagg tgaaatttgg acagctttta caagtgaagc tatagataaa
      781 ctcttgccaa atggattaaa atttatacac gataaattca tacattctaa acacaatgtt
      841 atccgcggta tccatggcga tgtaaaaact tataagcttg caacttgtat ttatggggaa
      901 attcatcagg tggtggtaga ttgcagaaaa gattcaccaa cttatttgaa gcatgaaaga
      961 ttcatcataa atcaagataa tcagcaaatc attttagttc cagcaggttt tggaaatgct
     1021 cattatgtta gcagtgaaag tgcagtttat tactataaat gtgcttattt aggagaatat
     1081 atggatgcac atgatcaatt tacttatgca tggaatgatg aaagaatagg catagattgg
     1141 ccaacaaatt ctcctatcct ttcagagcgt gatattttag cgatgagtaa ggataaatga
     1201 tgcaaaaaga ttctaaaatt tatatagcag ggcatggcgg cactttggga aaaactcttt
     1261 ataatacact tatagatgag ggttttaata atattatcgt aaaaacaaga aaagaattag
     1321 atttagtaga tcaaaaagct gtgactgatt ttttcgcaaa agaaaaacca gaatatgttt
     1381 ttttatgtgc tgccaagctt gataccttag ggctttttac tccagccgat gtaatttatg
     1441 aaaatagcgt acttcaagca aatattattc attcatctta tcaaaataat gttaaaaagc
     1501 taatttttta tggttctgct tgggcttacc ctcaaaaagc tataaatccc attaaagaag
     1561 agaatttatt agatggaaag ctagatttaa aagccgttgc atatggttta ccaaaaatta
     1621 taggaacaaa aatgtgcgaa agttataatt tgcaatatgg aacaaatttt atcactttgt
     1681 atcttgcaaa tttgtatgga gaaacaaccg agtttgattt acaaaaagca aaagttttac
     1741 cggctttgct tcgcaaattt catttagcaa agcttttaga tgaaaataaa attgatgagg
     1801 ttttaaagga tttgcaaatg aatttcttag agcaagcaat ggaatattta caaaaatttg
     1861 gtgtaagtaa agatagcgta gaaatttggg gtagtggtag tgtaattagg gaatttattc
     1921 atgcaaaaga tttagtcgat gcttctattt atgtgatgaa aaatatagat tttaaagata
     1981 ttgtttcatc taatgaaccg catcttaatg taggaagtgg ggaattttta agcataaaag
     2041 aacttgcttg tttgattaaa aatattgttg gatttaaggg tgaaattgtg tttaacaatt
     2101 caaaaccaga ttctacaatg gatagaatgt tagatagttc aagattgcaa aatttaggct
     2161 ggaaggcaaa aatcaagctt gaagacggca ttaaaatgat gtatgaatgg tatttaaaag
     2221 agcaaaatat aagacaatag gataaatcat gaaaaaaaca gcattaatta caggttttac
     2281 agggcaagtt ggctcacaaa tggcagattt cttgctagaa aacacagact atgatgttat
     2341 aggtatgatg cgttggcaag aacctatgga taatatctat catttaagcg ataggattaa
     2401 taaaaaagat agaatcagca ttttttatgc agatttaaat gattgctcta gtcttcaaaa
     2461 acttttcgag agtcaaaggc ctgatgtgat ttttcaccta gcagctcagt cttacccaaa
     2521 aacttctttt gatataccga ttgaaacttt acaaaccaac ataataggca cggcaaatat
     2581 cctagaaaac attagaattt taaaggcaaa agatggatat gaccctgtag tgcatgtatg
     2641 ctcttcaagc gaagtttatg gtaaagcaaa agcaggtgtt aaacttaatg aagaaacagc
     2701 ttttcacggt gcaagtcctt atagtataag caaaatcggc actgattact taggaagatt
     2761 ttatggcgaa gcttataaca tccgcagctt tgttacaaga atgggaacac atagtggtcc
     2821 aagaagaagc gatgtgtttt ttgaaagcac ggttgcaaag caaattgctt tgattgaagc
     2881 gggttatcaa gagcctgtta tcaaggttgg aaatctttca agtgtaagaa cctttcaaga
     2941 ttgtcgtgat gctataaggg cttattatct actttctctt gaaagtgaaa aaggaaaagt
     3001 tccttgtggg gaagctttta atatagcagg agaagaagtt tttaaactcc ctgaggttat
     3061 tgatatactt ttaggttttt ctacaagaaa agatattaaa gtagagcaag atgaagaaag
     3121 attgcgtcct attgatgcgg attatcaaat gtttgacaat actaaaatca aacgttatat
     3181 caactggaag ccagaaattc cagctagaaa aatgtttgag gatttgttaa atcattggag
     3241 agacgagata aaaaaaggaa ggattccttt aaatagatga aaactatacg cacgcaaact
     3301 cctctccgcc ttggtttagc aggtgggggg actgatataa atttatattg tgataaatac
     3361 acaggttatg ttttaaatgc gactatatct ttatacatac attgtacttt gatcgaaaga
     3421 gaagatggaa aaatcatttt tgattctcct gatacaaatt cttactgtga gtatgaaagc
     3481 aaagaattct tagaaaatga tggaaaatta gatattttta aaagcattta taatcgcatt
     3541 gtaaaagatt ttacaaaaaa acctttgagt ttttctttgc acacttattc ggatgtacca
     3601 agtggtagtg gtttgggcgg aagctcaacc ttagttgtag gggttataaa agcctttgca
     3661 gaatggctta atctaccttt aggggaatat gaaatcgcta aacttgctta tgagatagaa
     3721 agagaagatt taggtatagt aggtggagca caagatcaat acgccgcaac ttttggtggc
     3781 tttaatttta tggaatttta taataataaa agagtcattg ttaatccttt gcgcattaaa
     3841 aactggatag ctagtgagct tgaagctaga attgtgcttt attttacaaa tatcacaaga
     3901 gaagcaaaag atatagaaga gcataaaaaa ggaaagctcg gagatgaaaa atcccttgaa
     3961 gctatgcacg ctataaaaca agatgctata aagatgaaag aagctttatt taaggcggat
     4021 tttgatactt tggcgaaaat tttaggcaag tcttggcagt caaaaaaaat catttcagaa
     4081 atcgttagta atgatgagct tgaaagaatt tataaactag ctatagataa tggagcttat
     4141 agtggcaaaa ctagtggagc aggagcaggt ggatttatgt ttttctttgt ggatcctaca
     4201 aaaaaataca acttaatcaa agctttaagc aaagagcaag gttatgtgca agatttttca
     4261 tttacaaaag agggggttaa atcatggaga atttaaattc ttatataaaa gaacattttc
     4321 aagaatcaat tttagtaaaa gagcaaattt taaaagatga gaatttgata actcttatta
     4381 aaaatgcttc attagaagtc ataaaagctt ataaaaatgg taacaaaact ttacttgcag
     4441 gaaatggtgg tagtgctgca gatgcacagc atatcgcagg ggaatttgta agtaggtttt
     4501 attttgatag acccggtatc gcaagtattg cacttactac agatactagc atattaacag
     4561 ctattggcaa tgactatggt tatgaaaatt tatttgcaag acaagtgcaa gcacagggtg
     4621 ttaaaggaga tgtttttata ggaatttcta caagtggaaa tagtaaaaat attttaaagg
     4681 ctttagagct ttgcaagcaa aaagaaatca taagcatagg cttaagcgga gctaatggcg
     4741 gggatatgaa tgagctttgt gattattgta taaaagtacc ttcaacttgc acaccaagaa
     4801 ttcaagaagc acatatttta ataggacata ttatttgtgc tatcgttgaa gaagagcttt
     4861 ttggcaaagg tttttcttgc aagcaataat actttgtggc ggcttaggaa caaggcttaa
     4921 aagtgttata aaagacattc caaagcctat ggcaccgata aatgataagc cttttttaga
     4981 atttattttt gagtatctta aaaagcaagg cataaaagaa gttatcttag cggtatcata
     5041 caaatatgaa gtgataaaag agtattttaa agatgagttt ttaggcataa aaataaaata
     5101 cagtatagaa aaagagcctc taggaacggg tggagctata aaagaggctt tgaaaattat
     5161 aaaaaacgag gcttatgttt taaatggcga tacttttttt ggcatagatt taagcaaatt
     5221 aaagctaaat ggaggtaaaa tttgccttgc tttaaaacaa atgaatgatt ttgatagata
     5281 tggcacggta aatgttgatg ggctaggtct tgtaatttct tttgaggaaa aggtattcaa
     5341 aaagcaaggt ttaatcaatg gtggaattta tcttttagat aaagatattt ttaaagattt
     5401 tgctttgcag gaaaaatttt cttttgaaga atttttgcaa gaaaattata aaaaactaaa
     5461 agctaaagct catatttttg atgattattt tatagatatt ggcgtgcctg aggattatta
     5521 taattttatg tataaaggta atatagatgg tttttttaca tcgtcaaaat aatatttcta
     5581 agaaagttag aaattttggt gtagagattg atttaaggcg taataaacaa ggtttggttt
     5641 ta
//
LOCUS       DARBBO010000098         5455 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.098, whole genome shotgun sequence.
ACCESSION   DARBBO010000098 DARBBO010000000
VERSION     DARBBO010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5455)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5455)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5455
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.098"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            56..751
                     /locus_tag="SB854_001486"
     CDS             56..751
                     /locus_tag="SB854_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEG0957470.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLNEKFPNVESFSEALELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            748..2001
                     /locus_tag="SB854_001487"
     CDS             748..2001
                     /locus_tag="SB854_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEG0957471.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSSQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKNLKQNCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHVFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     ESKFESSKYEKEITTLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGS
                     FFKCKGKIVLNTPYEILAPLGDVIQTCDNELGKIYQKEDKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            2002..2496
                     /gene="purE"
                     /locus_tag="SB854_001488"
     CDS             2002..2496
                     /gene="purE"
                     /locus_tag="SB854_001488"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEG0957472.1"
                     /translation="MNFVSILMGSKSDYETMKEAAKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEKKGVKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMSGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2506..3042
                     /locus_tag="SB854_001489"
     CDS             2506..3042
                     /locus_tag="SB854_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HEG0957473.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPGSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3054..3917
                     /gene="glyQ"
                     /locus_tag="SB854_001490"
     CDS             3054..3917
                     /gene="glyQ"
                     /locus_tag="SB854_001490"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEG0957474.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDIKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            3904..4240
                     /locus_tag="SB854_001491"
                     /pseudo
     CDS             3904..4240
                     /locus_tag="SB854_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
     gene            4250..4966
                     /locus_tag="SB854_001492"
     CDS             4250..4966
                     /locus_tag="SB854_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEG0957475.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINKTLKDAELKIGKINT
                     DLEKIDEEIKDIENQKVQNNAHISEFSAKIKELSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILDNKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVGEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            4963..>5455
                     /locus_tag="SB854_001493"
     CDS             4963..>5455
                     /locus_tag="SB854_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HEG0957476.1"
                     /translation="MIFFYYFLTWTAFLFCAVFILLFSFFKSKYKTSLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKTLVLKFDSRITTITQTGFECAKEFCKKVNYLAFENFL
                     PFWLKPCKVLVIFEAEYWLMLVFMARIYKAKIVLLNARISDKSYHSYQRFSFFYKKIF
                     SYID"
BASE COUNT         2022 a          643 c         1052 g         1738 t
ORIGIN      
        1 attgattata attttgagca attattgaaa atctagattt aaaaaaggga aaaaaatgac
       61 tcaagaagag cttgatgctt tgatgaatgg tgatgttgat cttgattcag agacagaagc
      121 agaggtaaaa accgaagaat cgaataccga agaagatgct ttgatgttag aagatgtcaa
      181 aatagctgat tacaaaccta atcctagcgt ggtatggcca ccacccccac caaatcagga
      241 gcataaagtt gtacatcagt tagatgatgt tacaaaagat agcgagctta aagcaacgga
      301 aatgatggat aagcttgaaa gtattaataa tttttttgcg gattctgaaa gtttactcaa
      361 agaaataaat aaagcaatag aaaaaaatat tgatattttt tctaaactta atgaaaaatt
      421 tcctaatgtg gaaagtttca gtgaagcttt agaattaaac aatcaagcta aaaaaagttc
      481 taaggagatt gtcggaaatc ttcaaagcgg acaagatgaa gtgatgatgg caatggatgc
      541 aatgcagtat caagatatac atcgtcaaaa aatcgagcgt gttattaatg taatgcgtgc
      601 tttaagccgt tatatgagtt ctttatttga aggtaaaatt gatgataaaa aacgtgtaag
      661 ttctgcagtg catattgaag gtgatagtac tgctgatgtt gtaagtaatg atgatataga
      721 agctttaatt gcaagtttag ggcaaaaatg atcattcctg aaatagtagc tcctgcagga
      781 aatttcacaa aattaaaaat tgctttagct tatggcgcag atgcggttta tgcgggtgtg
      841 aataattttt ctttaagatc acgcactgca agagaattta attatgaaag ttttgaagaa
      901 gctatcaaat atactcatga gcgtggtaag aaaatttatg ttactttaaa tggttttcat
      961 ttaagctctc aaattgaagg cttaaaaaga catatattaa aattacgcga gatgaaaccc
     1021 gatgctttta ttgtagcttc tgttggagct atgcgtcttg ttaaagaact tgcacctgaa
     1081 atttccctgc atgtttctac tcaggcaaat attttaaatt atttagatgc tcaagtctat
     1141 aaggatatgg gtgctaaaag ggttgtaatt gcgagagaac tagggcttaa ggatgctaaa
     1201 aatttaaagc aaaattgtga tatagaatta gaagcttttg tgcatggttc tatgtgtttt
     1261 gcttattcag ggcgttgttt aataagctct gtgcaaagtg gaagaatgag caatcgtgga
     1321 tcttgtgcaa atgactgtag atttaattat gagctttatg ctaaaaatcc agaaaatggc
     1381 actttatttc gcttagaaga agatgaaaat ggtactcatg tgtttaattc taaggattta
     1441 aatctttgtt cttatataga aaaaatcatg caagaaaatt gtatcagtgc ttttaaaata
     1501 gaagggcgta ctaaaagcga atattatgtt gcgcttacaa caaggactta taaaatggcc
     1561 atacaagatg ctttagagag taaatttgag tcaagtaagt atgaaaaaga gattactaca
     1621 cttaaaaatc gtggttttac agatggttat cttgtttctc gtcctttaga aaaaaccgac
     1681 acgcaaaatc ataatacaag catagaagaa ggttctcatc aagtgcatgc tataagcgaa
     1741 gatggaagct tttttaaatg taaagggaaa atcgttttaa acacgcctta tgaaatttta
     1801 gcccctttag gcgatgtgat tcaaacttgc gataatgaac taggtaaaat ttatcaaaaa
     1861 gaggataaat attttataga gtttaaaaaa ctcattgcta aaaacaataa agaatttagc
     1921 gaaattcata gcggcaatga acatgaaatc caattaccaa ataaaatcag tgcattaagt
     1981 tttttaagaa aggaaatata gatgaatttt gtttctattt taatgggaag caagagtgat
     2041 tatgagacta tgaaagaggc tgctaaaact ttagaaagtt ttggggtaaa gtatgaactt
     2101 attatctcat cagctcatcg tagtccaaaa agaacaaaag agtatattgc aaatgctgaa
     2161 aaaaaaggtg tgaaagtttt tatagcagca gctggaatgg cagcgcattt agctggagct
     2221 gttgcagctt atacaacaaa acctgttttg ggagtgccta tgtcaggaag caatcttgca
     2281 agtatggatt ctttgttttc tacggtgcaa atgcctagtg gaattcctgt aggaacttta
     2341 gctattggta aggctggagc aatcaatgct gcttatttgg ctatgcaaat tttagctatt
     2401 tatgatgttg atttagcaca aaagcttaaa gaagatcgtc ttgaaaaaga aaaaaaactt
     2461 gtatctgatt caaaagaagt agaagtttta ttataaggga taaaaatgca aacctatctt
     2521 gaacttgaag aattttgtaa acttgtgcat ttaaatgaag atgtggttaa gggtatgatg
     2581 gccaatgggg ctttaaattt taaagaagaa gagggtaaaa tttacatcga agctcatcaa
     2641 ggtactttta gtgtagtacc tggttctgca aaatctcaaa ctgcaatggt aaattcaatg
     2701 actttagcag gagaaagttt tgttgaaaaa acaataggaa ctattttaaa tttgcatgaa
     2761 aaagttttag atgctaaaga tgaaacactt gaagcattaa aaaatgagaa taaattttta
     2821 aaagacgccc tttattctat gcaagaactt tatgatgaag atagaaaaac tatagaaacc
     2881 ttaaacaatg agctaaaaca tgcgcgtgaa gagatagaat ttctcaagcg taaatataaa
     2941 ttaatgtgga gtaaaaccgc agaaattttt ggagctaaga cagagcctga tttggaaatg
     3001 aataaaaatt tagaaaaacc tattgaaaat atggaacaat aaagagagat acaatgactt
     3061 tttcacaaat gatacttaat ttgcaaaatt attggcaaga gcaaggttgt gcgattatgc
     3121 aaccttatga tatgccagca ggtgcaggaa cctttcatcc agcaactttt ttaagaagtt
     3181 taggaaaaaa accttgggca gctgcttatg tggctccaag tagaaggcct actgatggac
     3241 gttatggtga aaatcctaat cgcttaggtg cttattatca atttcaagtt ttgattaaac
     3301 ctagtcctga taatatccaa gaattatatc ttaaaagtct tgaaaatttg ggttttgatt
     3361 taaaaagtca tgatattcgt tttgttgaag ataattggga gagtccaagt ttgggtgctt
     3421 ggggtttagg ctgggaagta tggcttgatg gtatggaagt cactcaattt acttattttc
     3481 agcaagttgg tggtatagca gtagatttag taagtgctga aattacctat ggtcttgaaa
     3541 gaatagccat gtatcttcaa aatgttgata atgtttatga tatagtttgg agtgaattta
     3601 atggagaaaa aattaaatac gcagatgtgc ataagcaaag tgaatatgaa tttagtaaat
     3661 acaattttga agtaagtgat attaaaatct taaatgagca gtttgaaaac tcttacaaag
     3721 aatgtaaaaa tattttagaa caaggattag ctttacctgc ttatgattat tgtatgcttg
     3781 ctgcacatac ttttaatctt ttagatgcaa gaggagcaat ttctgtagca caaagacaag
     3841 attatatgtt aaaaattcgt gagctttcga aaaattgtgc tgaaatttat aagaaaaatt
     3901 taaatgaagc tgagtgaaat ttataatttt ttagatcaat taagtccctt taatatccaa
     3961 gaatcatggg ataatagtgg aattttgctt ggagataagg atagtgaaat ttcaaggaag
     4021 tggcggggat ttaatttcta aagtagatgc agattgtttt ttaagtggag attttaaata
     4081 tcatcaagct ttagaggcgc ttagcaatca aatcagtctt attgatttag gtcattttga
     4141 aagtgagaga tatttttctc aatgtttagc aaaagacttg aaaaatttgc cgctacaagt
     4201 tataataaca gtttcaaaaa atccatttca atatttttaa ggaaaataaa tgaataaata
     4261 tctcgaacaa ttagtgcttt tatcaaaaat agatcaagaa attgatagtt atgaaccaaa
     4321 aatagacagt attaataaga ctttaaaaga tgctgagtta aaaataggaa aaatcaacac
     4381 agatttagaa aaaatcgatg aagaaatcaa agatatagaa aatcaaaaag tgcaaaataa
     4441 tgctcatatt tccgagtttt cagcaaaaat taaagagctt tctaaaaaaa gtggtgcggt
     4501 aaaaacagaa aaagaagcta atgctttaaa aattgaagaa gatattgcaa aagagcaatt
     4561 agacgctgca aatgatgaga ttgtaagatt ggataaaatt ttagacaata aagaaactta
     4621 taaaaaagaa cttgaagaag aaaaaatcaa acaagagcaa aatattaatg agattagagt
     4681 aagcattaaa tctgaaatgg aagttcttga aaaagataga atgagtgttt atgataaaaa
     4741 aaccaaactt gtgggcgaga tgaatcaaaa agttttaagt ttttatgaaa aaattcgtaa
     4801 atgggcgaaa aatactgctg tagttcctgt taaaaaacaa gcatgctatg gatgttttat
     4861 gaaaatttac gataagactt atctgtctgt tgtaaaaggt gaagagattg taacttgccc
     4921 ccattgtgga agaattcttt ataaagagca agaagaacaa aattgatctt tttttattat
     4981 tttttaactt ggacggcatt tttattttgt gccgtcttta ttcttttgtt ttcttttttt
     5041 aaatccaaat acaaaactag tttaaaatcc cgattttttc tttataaaaa tttacatcaa
     5101 gaaaaagctg atgtacattt tcatgcttgt tcttatgggg aggtaagaag tattaaaact
     5161 ttggttttga aatttgattc aagaataact actattactc aaacaggttt tgaatgtgca
     5221 aaagaatttt gtaaaaaggt aaattatctt gcttttgaaa attttttgcc tttttggctt
     5281 aagccttgca aggttttggt aatttttgaa gcagaatatt ggcttatgct tgtttttatg
     5341 gcacgtattt ataaggctaa gattgttttg cttaatgcga gaatatctga taagtcttat
     5401 cattcttatc aaagattttc ttttttttat aaaaaaattt tttcttatat tgatg
//
LOCUS       DARBBO010000099         5416 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.099, whole genome shotgun sequence.
ACCESSION   DARBBO010000099 DARBBO010000000
VERSION     DARBBO010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5416
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.099"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..455)
                     /locus_tag="SB854_001494"
     CDS             complement(<1..455)
                     /locus_tag="SB854_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0957477.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINI
                     PIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSG"
     gene            complement(520..969)
                     /locus_tag="SB854_001495"
     CDS             complement(520..969)
                     /locus_tag="SB854_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HEG0957478.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            complement(1099..2319)
                     /locus_tag="SB854_001496"
     CDS             complement(1099..2319)
                     /locus_tag="SB854_001496"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEG0957479.1"
                     /translation="MLNNTLFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDEGLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            complement(2313..3137)
                     /gene="galU"
                     /locus_tag="SB854_001497"
     CDS             complement(2313..3137)
                     /gene="galU"
                     /locus_tag="SB854_001497"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEG0957480.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEIQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(3219..5192)
                     /gene="acs"
                     /locus_tag="SB854_001498"
     CDS             complement(3219..5192)
                     /gene="acs"
                     /locus_tag="SB854_001498"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEG0957481.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQAFEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGVIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPNEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
BASE COUNT         1764 a         1023 c          690 g         1939 t
ORIGIN      
        1 ccactttgca aaaaaagacc tactaaatta tttataggta aatttttctt acttacacta
       61 ataaattctt caaaatcaaa ataatcaagt tcaagctctt caaacccatt tacatttaaa
      121 tcttttatat ttgtacttaa gatgatggga atgttaattt tttctaaatt agggataaaa
      181 tccaaattat aaaggcaaag aattttaatt tgtaaatttt cattcagaaa atcagcaagt
      241 ctttctaaac tttgtttttc aaagcgtgta tcatataaat ctaaaaacaa aatttcactt
      301 gctttaaatt gagataaaaa attaaaaata agtgtttttt taccacaaaa tcgtgggcct
      361 tttatgataa tatttggttt tgaaatttga ttttttcttt cataacttac ttcaaattta
      421 gggtggtttt cataaaaaaa attaagtact ttcaatttta tcctttaaaa aaggatatta
      481 taacctagtt tgtataattg gggcataaag ccccttaaat tacattttgc aagcaccttg
      541 taaagtagcg cctatcatcc aaagactttt ttcatatttt gcgatatttt cttgtgcaaa
      601 agcagctgtt gtagtatcac tttctttttc tgctgcttca ttgagttttt taaattctgc
      661 taaaagatat tcataatctt gtttgatcag ttctatgact tcaagcggag taaagcaatc
      721 ttttgcaact tttggacttt ttgcattttc cattaaaact ttttggcaag tgatagcttt
      781 ttcgccaagt tgtaaaactc tttcagcaca actatcaaaa agttctgcca tttcttcata
      841 agctttttct gtgtactcgt gtatagaaaa aaattgcaaa ccttttacat tccagtgata
      901 attatgaaat ttaacccata aatgatgagc atctgcttgc atttgtaata attgttttgt
      961 aactgacatg attgactcct ttttttaatt tttaaaatta taacataaaa ttcttaaata
     1021 ataattatta ttattaatta aaaattttta ttataatttt aacttaaaat cattatactc
     1081 ttttttaatg aattttgatt aagaatttaa tatatttttt aagatcaact ttccaacttc
     1141 cacaccaggt tgatcataag tgttaatccc tagcataaca ccgcaagttg aagtaaaaag
     1201 ttcataataa tacatcaaat atcccgcatg ccaagcgtca agtttttcaa gttctatcac
     1261 atcaacactc aaattttcag cgattaaagc gtgcatagtt gcatcacatt gagcgtttaa
     1321 aagttcgtga agattgactt tattacttaa agaatctaaa aatttaaaat gaatatcagg
     1381 gataataggt gctttttgag cgtctttgat ttttaaaaaa gttacagttt tatttttagg
     1441 tccatccatg atgagttgta aaaaactatg ttgatctctt gcgccaatga gtgcaatagg
     1501 agttaaacct atgcgtttat agccttgctt tttacctaaa ctttcagcaa taagctggat
     1561 ataccattca ttaaagcctt taaaagcatc gctatatgaa aaaagtacat tgatattggc
     1621 atttttgtgt gtacaataat gataggcttt ttgtaaaatt tcatcttttt tgtgagtaaa
     1681 aaaatcttca aaacaagctt tagctccttc taaaagagct ttggcattat agccacaaaa
     1741 acaaagtgga actataccta cggctgaaag tatgctaaaa cgacctccta catttgcagg
     1801 gataaaaaag catttaatac ctaaattttc accttcttga tgaagttttg aatccttatc
     1861 ggtaataaaa acaaagtatt tttttaattc ttgcatatca agtttaaaat gttcaataag
     1921 aagtttaaaa agcgatacaa cttctatagt actacctgtt ttgctgatga ttaaaaacaa
     1981 actttcttca agcttgattt tttctaaagt cttattaaaa gaatgcgagc ttgtgttatc
     2041 gagtataaaa agctctcttt ggttgctttt ttcattaaaa agcatatcac gcaaggcttt
     2101 tacaccacaa cttgaacctc ccattcccac taaaacgata ttttttacat actctttatc
     2161 ttgaataaat tgcaagccct catcgattaa attcaaactt gtgtcaataa gatgataata
     2221 ccctatatct ccacttttta cctcatcatt aatacgattt gcataagaac ttatagtgtg
     2281 aatttcactt tgtttaaaaa aaagcgtatt gtttaacatt tacttttctc gtaaaaataa
     2341 tttgtcgcct ctacaaagcc ttctacactt ccacaatcaa agcgtttccc ttgaaattta
     2401 taagctaaaa ccataccatt ggttgcttga gttaaaagcg cgtcggtaag ttgaatttca
     2461 ccattttttc ctgctttagt attttctaaa attccaaaaa tatcaggagt taaaatatat
     2521 cttcctatga tagcaagatt acttggagct tcatcaggac ttggtttttc tatcatagaa
     2581 ttaaccatga taagattttc ttctacaaaa tttccagaaa ttactccata gtttgaaact
     2641 tgctcttttg gtacttccat cacagctatg atggtgcagc gatatttttc ataaattttt
     2701 accatttgag ccataacatt taagccttct tcattaacac acaaatcatc agccaaaatt
     2761 acgccaaaag cttcatcgcc aaccaaaggt ctacctttta aaaccgcatc acctaagcct
     2821 ttcatttgat tttgtcttgt aaaagtaaag gtacaacgat tgatcaaaga gcgaatttca
     2881 tcaagtaagt attctttttt tgtacctgaa atttgatgtt caagttcata agaaatatca
     2941 aaataatcct ccaaagctct ttttccacgc cctgtgacaa atcccatatt ttccattcct
     3001 gcttctaaag cttcatcaac tccataatgg atcaaaggct tggttaagat aggtaacatc
     3061 tctttaggta aagtttttgt tgcaggtaaa aatctcgtcc cataacctgc cgcagggaaa
     3121 atacaagttt gaagcataaa aatttccttt tattttttta tcattatagc ttatttttat
     3181 gaattttcat gcaacaaggc aaagttcttt ttgccttgtt attcaaactc tgccttagct
     3241 aatttaacaa tggtttctac tactttagaa tcttcaagtg ttgaaatatc ctgtttgatt
     3301 tcttcgcctc ttgctatagt tcttaaaatt cttctcatta ttttaccact tctagttttt
     3361 ggcaaacctg gagtataaag aattttttct attttagcta taggtcctat ttctactctt
     3421 aaaatgtcat taagttcttt taaagtttct atagctccgc caagatcaca actggatgca
     3481 ggacttaaaa ccacaaaagc aaacaatgac tcgcccttaa tcgtatccaa aatactcact
     3541 acagctgatt ctgctacact tggatgttta gcaatagcgc tttcaatttc agccgttcct
     3601 atacgatgtc ctgcaacatt aaccacatca tctgttcttc ctgtgatggt aatataacca
     3661 tttttatcat aaaaagcacc atcgccacta aaatatacag cttttccatc ttttttagct
     3721 tgagaaaaat aactttctat atagcgttca tcattgcccc aaattccacg aatcatcgaa
     3781 ggccaaggtt tagttataca aagcaaccca tcttcacctt catctttttt attgccttct
     3841 tcatcaataa cttccgcaaa aatccctggc aaaggcaagg tggcacaacc tggttttaaa
     3901 ggagtggcgc ctggtaaagg cgtgatcata tgcccacctg tttctgtttg ccaccaagta
     3961 tcgactatag gacttttagt tccccctatt tcatcataaa accacttcca agcactagga
     4021 ttgataggct ctccaaccgt tccaagcact tcaagcgtac ttaaatcata ttttcttggc
     4081 tcattaggtg catcagcatg aagcattctt atggcagttg gcgaagtgta gaatttgctt
     4141 atttgatact cttctatcat tctccaccaa cgcccagaat ttggataagt aggagttcct
     4201 tcatgcatta tagtcgttgc cccacatgct aaaggcccat aaactacata agtatgtcct
     4261 gtaatccaac ccacatcagc actacaccaa taattatcat aatctttaat atcaaaaacc
     4321 cattccatag tcatttgtgc ccaaagtata tatcctgcac ttgcatgcat aactcctttt
     4381 ggcttgcccg ttgatcctga agtgtaaagc aaaaacaaca aatcctcact atccataatt
     4441 tcgggttcac acttataaga ctcatttttc acaagttcgt tataaacata gtcccttcct
     4501 ttaatatatt ctataggctc attattgcgt ataactataa gtactttttc tacactttca
     4561 cacccttcac ttaaagcctt atctactgca ggttttaaca tataaggttt gccacgacga
     4621 aaagcaccat cagccgttac tacaagttta gctcctgcat ctataattct atctcttaag
     4681 gcttcaggag aaaaccctcc aaatactaca ctatgaataa ccccaatcct tgcacaagct
     4741 aacattacta tagctgtttc tggaatcata ggcatataaa ttacaaccct atcgcctttt
     4801 tttactccga attttttaag caaattggcc gccttgcaag tttcatgcaa taatcttcta
     4861 taagtataaa cttcataatc ccccatttca ccttcaaaaa tcaaagcagc tttattgcgt
     4921 cttgttttca tatgacgatc aagacattga taacttacat ttaaagttcc accttcaaac
     4981 catttataaa atggagcttt atcctcattt agcactcttg aaaaaggcga aaaccactca
     5041 atcttctcaa atgcttgtct tttccaaaaa ccttcaaaat cttccttggc ttcatcgcat
     5101 aaatcatagt attcacataa attttttata cgagcattac gagaaaattc tttacttggc
     5161 ttaaaaagct cttgattatt ttgattaagc ataaaaactc ctttatggtt gtttttaaac
     5221 attatataag agtttatttg tattaaatac aaatttaaaa aataattaag ataaatttta
     5281 taaaaaatgg gaatatttgt aatattttat ttaaatttta taatgtatgt taatttaaga
     5341 aacatattgc atcttcataa aaataaagac taagttcttc gtataatttt aaatcgaatc
     5401 ttaaaaattc ttgttt
//
LOCUS       DARBBO010000100         5404 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.100, whole genome shotgun sequence.
ACCESSION   DARBBO010000100 DARBBO010000000
VERSION     DARBBO010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5404)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5404)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5404
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.100"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            37..911
                     /locus_tag="SB854_001499"
                     /pseudo
     CDS             37..911
                     /locus_tag="SB854_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937326.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,3 sialyltransferase"
     gene            912..1952
                     /gene="neuB"
                     /locus_tag="SB854_001500"
     CDS             912..1952
                     /gene="neuB"
                     /locus_tag="SB854_001500"
                     /EC_number="2.5.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase"
                     /protein_id="HEG0957482.1"
                     /translation="MKEIKIQNIIISEEKAPLVVPEIGINHNGSLELAKIMVNAAFSA
                     GAKIIKHQTHIVEDEMSKAAKKVIPGNAKISIYEIMQKCALDYKDELALKEYTEKLGL
                     VYLSTPFSRAGANRLEDMGVSAFKIGSGECNNYPLIKHIAAFKKPMIVSTGMNSIESI
                     KPTVKILLDNEIPFVLMHTTNLYPTPHNLVRLNAMLELKKEFSCMVGLSDHTTDNLAC
                     LGAVALGACVLERHFTDSMHRSGPDIVCSMDTQALKELIIQSEQMAIMRGNNESKKAA
                     KQEQVTIDFAFASVVSIKDIKKGEVLSMDNIWVKRPGLGGISASEFENILGKKALRDI
                     ENDTQLSYEDFA"
     gene            1949..3073
                     /gene="neuC"
                     /locus_tag="SB854_001501"
     CDS             1949..3073
                     /gene="neuC"
                     /locus_tag="SB854_001501"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (hydrolyzing)"
                     /protein_id="HEG0957483.1"
                     /translation="MKKILFITGTRADYSKIKSLMYRVQNSSEFELYIFATGMHLSKN
                     FGYTVKELYKNGFKNIYEFINYDKYYQTDKALATTIDGFSRYVNELKPDLIVVHGDRI
                     EPLAAAIVGALNNILVAHIEGGEISGTIDDSLRHAISKLAHIHLVNDEFAKRRLMQLG
                     EDEKSIFIIGSPDLELLNNNKISLNEAKKYYDINYENYALLMFHPVTTEITSIKNQTD
                     NLVKALIQSNKNYIVIYPNNDLGFELILQSYEELKNNPRFKLFPSLRFEYFITLLKNA
                     DFIIGNSSCILKEALYLKTAGILVGSRQNGRLGNENTLKVNANSDEILKAINTIHKKQ
                     DLFNTKLEILDSSKLFFEYLQSGEFFKLSTQKVFKDIKHA"
     gene            3066..3683
                     /locus_tag="SB854_001502"
     CDS             3066..3683
                     /locus_tag="SB854_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG0957484.1"
                     /translation="MLKKIISLYKRYSISKKLVLDNEHFIKENKNIYGKKHKGFFDLD
                     EKAKDVKSPLNPWGFIRVKNEALTLRVSLESILPALQRGIIAYNDCDDGSEELILEFC
                     KQYPNFIAKKYPYKVDLENPKNEENKLYSYYNWAASFIPLDEWFIKIDVDHYYDAKKL
                     YKSFYRIDQENKALCYPRINFIILNGNIYVQNSGNYGFIGGGINS"
     gene            3680..4012
                     /locus_tag="SB854_001503"
     CDS             3680..4012
                     /locus_tag="SB854_001503"
                     /inference="COORDINATES: protein motif:HMM:NF018059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957485.1"
                     /translation="MIKRRNSSFIERRVSKKSQWIDPKGLIEELYSEQQVLSQGVKIL
                     QAPLLQWHFPALKYRRNDYQQYLDILSLEEFQAFHRKSKEAKKIDFAMLKRPVIEQIL
                     KKFQGEIK"
     gene            4009..4674
                     /locus_tag="SB854_001504"
     CDS             4009..4674
                     /locus_tag="SB854_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase family
                     protein"
                     /protein_id="HEG0957486.1"
                     /translation="MSLAIIPARGGSKGIKNKNLVLLNNKPLIYYTIKAALNAKSISK
                     VLVSSDSDVILNYAKSQNVDILKRPISLAQDDTTSDKVLLHALKFYKDYEDVIFLQPT
                     SPLRTNIHIDKAFNLYKNSNANALISVSECDNKILKAFVCNDYGDLAGICNDEYPFMP
                     RQKLPKTYMSNGAIYILKIKEFLNNPSFLQNKTKYFLMDESSSLDIDCLEDLKKVEQI
                     WKK"
     gene            4662..5404
                     /locus_tag="SB854_001505"
                     /pseudo
     CDS             4662..5404
                     /locus_tag="SB854_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906695.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CatB-related O-acetyltransferase"
BASE COUNT         2106 a          735 c          865 g         1698 t
ORIGIN      
        1 aaaatcgtta aaaataaatc ttgatggaaa ataattatga aaaaagttat tattgctgga
       61 aatgggccaa gcttaaaaga aattgattat tcaaggctac caaatgattt tgatgtattt
      121 agatgcaatc aattttattt tgaagataaa tactatcttg gtaaaaaatg caaagcagta
      181 ttttacaatc ctagtctttt ttttgaacaa tactacactt taaaacattt aatccaaaat
      241 caagaatacg agacagaatt aatcgtgtgt tctaatttta atctaactca tatagaaagc
      301 gaaaattttt taaaaaactt ttatgattat tttcctgatg ctcatttggg atatgatttt
      361 tttaaacaac ttaaagaatt taatgcttat tttaaatttc acgaaattta tttcaatcaa
      421 agaattacct caggaatcta tatgtgtgca gtagccatag ccctaggata caaagaaatt
      481 tatctttcgg gaattgattt ttatcaaaat ggatcatctt atgcttttga tactaaacaa
      541 aaaaatcttt taaaattggt ttctaatttt aaaaatgata attcacacta tatcggacac
      601 agcaaaaata cagacctaaa agctttagaa tttctagaaa aaacttacaa aataaaacta
      661 tattgcttat gtcctaacag tcttttagca aattttatag aactagcgcc aaatttaaat
      721 tcaaatttta tcataaaaaa aaaaataact acactaaaga tatactcata ccttctagtg
      781 aggcttatgg aaaattttca aaaaatatta tttttaaaaa aataaaaatt aaagaaaata
      841 tttattacaa gttgataaaa gatctattaa gattacctag tgatataaag cattatttca
      901 aaggaaaata aatgaaagaa ataaaaatac aaaatataat cataagcgaa gaaaaagcac
      961 ccttagtcgt acctgaaata ggcattaatc ataatggcag tttagaacta gctaaaatta
     1021 tggtaaatgc agcctttagc gcaggtgcta agattataaa gcatcaaacc cacatcgttg
     1081 aagatgagat gagtaaggcc gctaaaaaag taattcctgg taatgcaaaa ataagcattt
     1141 atgagattat gcaaaaatgc gctttggatt ataaagatga gctagcactt aaagaataca
     1201 cagaaaaatt aggtcttgtt tatcttagca cacctttttc tcgtgcaggt gcaaaccgct
     1261 tagaagatat gggagttagt gcttttaaga tcggttcagg tgagtgtaat aattatccgc
     1321 ttattaaaca catagcagcc tttaaaaagc ctatgatagt tagcacagga atgaatagta
     1381 ttgaaagtat aaaaccaact gtaaaaatct tattagacaa tgaaattccc tttgttttaa
     1441 tgcacacgac caatctttac ccaaccccgc ataatcttgt aagattaaac gctatgcttg
     1501 aattaaaaaa agaattttct tgtatggtag gcttaagcga ccacacaaca gataatcttg
     1561 cgtgtttagg tgcagttgca cttggagctt gcgtacttga aagacatttt actgatagta
     1621 tgcatagaag tggccctgat atagtttgtt ctatggatac acaggcttta aaagagctta
     1681 ttatacaaag tgagcaaatg gctataatga gaggaaataa tgaaagcaaa aaagcagcta
     1741 agcaagaaca agttacaatt gattttgcct ttgcaagcgt agttagcatt aaagatatta
     1801 aaaaaggcga agttttatct atggacaata tctgggttaa aagacctgga cttggtggaa
     1861 ttagtgcgtc tgaatttgaa aatattttag gcaaaaaagc attaagagat atagaaaatg
     1921 atactcagtt aagctatgag gattttgcgt gaaaaaaatc ctttttataa caggtactag
     1981 ggctgattat tctaagatta aatctttaat gtacagggtg caaaactcaa gcgaatttga
     2041 actttacatc tttgcaacag gaatgcactt aagcaaaaat tttggctata cagttaaaga
     2101 gctttataaa aatggcttta aaaatattta tgaatttata aattatgata aatattatca
     2161 aactgataag gctttagcta ctacaattga tggattttca aggtatgtaa atgagttaaa
     2221 acctgattta atcgtagtgc atggagatag aatcgagcct ttagcagcag ctattgttgg
     2281 agcattgaac aatatcttag tagcacatat tgaaggtgga gagatttcag gaactattga
     2341 tgatagctta cgccacgcta tatcaaaact agctcatatt catttagtaa atgatgagtt
     2401 tgcaaaaagg cgtttaatgc agcttggaga agatgaaaaa tctattttta tcataggttc
     2461 gcctgattta gaacttttaa acaataataa aatttcactt aatgaagcaa aaaaatatta
     2521 tgatataaat tatgaaaatt atgctttgct tatgtttcat cctgttacaa ctgaaattac
     2581 aagcattaaa aatcaaacag ataatttagt aaaagcactg atacaaagta ataaaaatta
     2641 tattgttatt tatccaaata atgatttagg ctttgaatta atcttacaaa gctatgaaga
     2701 acttaaaaat aaccctagat ttaagctttt tccatcgctt agatttgagt attttataac
     2761 tttgttaaaa aatgctgatt ttataatagg taattcaagt tgtattttaa aagaggcctt
     2821 atacttaaaa acagcaggga ttttagttgg ctctaggcaa aatggaagac ttggtaatga
     2881 aaatacacta aaagttaatg caaatagcga tgaaatacta aaagctatta ataccattca
     2941 taaaaaacag gatttattta acactaagtt agagatttta gatagctcaa aattattttt
     3001 tgaatattta caaagcgggg aattttttaa actcagcaca caaaaagttt ttaaggatat
     3061 aaaacatgct taaaaaaatc atttctttat ataaaagata ctcgatttct aaaaaattgg
     3121 ttttagataa tgagcatttc attaaggaaa ataaaaacat ctatggaaaa aaacataagg
     3181 gcttttttga ccttgatgaa aaggctaagg acgtgaaatc accccttaat ccttggggat
     3241 ttatcagggt taaaaatgaa gctttaaccc taagagtttc tttagaaagt atactacctg
     3301 ctttacaaag aggaattata gcttacaacg actgtgatga tgggagtgaa gagcttattt
     3361 tagaattttg caagcaatat cccaacttca ttgctaaaaa atatccttat aaagtagatc
     3421 tagaaaatcc taaaaatgaa gaaaataaac tttactctta ttacaattgg gcagcatctt
     3481 ttataccctt agatgagtgg tttataaaaa tcgatgtgga tcattactac gatgccaaga
     3541 agctttataa gagtttttat aggattgatc aagaaaataa agccttatgc tacccaagaa
     3601 ttaattttat aatcttaaat ggaaatattt atgtgcaaaa tagtggaaat tatggattca
     3661 tagggggggg gatcaactct tgattaaaag aagaaatagt agctttatag aaagaagggt
     3721 ttcaaaaaaa agccaatgga tagatcctaa gggacttata gaagaactct actccgagca
     3781 acaagtctta tctcaaggag tgaaaatact acaagctccc ctacttcagt ggcattttcc
     3841 tgccttaaaa taccgccgaa acgattacca acaatattta gatatcttga gtttagaaga
     3901 atttcaggcc tttcatcgta agagcaaaga ggctaaaaaa atagactttg ccatgctaaa
     3961 acgccctgta atcgagcaaa tattaaagaa atttcaagga gagataaaat gagcttagca
     4021 ataatccctg ctcgtggtgg ctcaaagggt attaaaaata aaaatttggt tttattaaac
     4081 aataaacctt taatttatta cacgattaaa gctgcactaa atgctaaaag cattagcaaa
     4141 gtccttgtaa gcagcgatag tgatgtaatt ttaaattatg caaaaagcca aaatgttgat
     4201 attttaaaac gcccaattag ccttgcgcaa gatgatacta caagcgataa agtgctttta
     4261 catgctctaa aattttataa agattatgaa gatgtgattt ttttacaacc cacttcgcca
     4321 ctaagaacaa atattcatat tgataaagct tttaatcttt ataaaaatag caatgcaaat
     4381 gccctaatta gcgtaagcga atgtgataat aaaattctaa aagcctttgt ttgtaatgat
     4441 tatggcgatt tagcagggat ttgtaatgat gaatatcctt ttatgccaag gcaaaaattg
     4501 cctaaaactt atatgagcaa tggtgcaatt tatattttaa agataaaaga atttttaaac
     4561 aatcctagct ttttgcaaaa caaaaccaag tattttttaa tggacgaaag ctcaagttta
     4621 gatattgact gtttggagga tttaaaaaag gttgaacaga tatggaaaaa ataaccttaa
     4681 aatgcaataa aaatatatta aatttattaa agcaatataa tatttataca aaaacttaca
     4741 tagaaaatcc tagaagattt tcaagactaa aaaccaaaga ttttataacc attccattgg
     4801 aaaacaatca attagagagt gcgggggggg atagaagaat attgtgcttt taaatttagc
     4861 aatatcttac atgaaatagg ttcattttct tttagcggat cttttctacc tcattatgca
     4921 aaagttggaa ggtattgttc aattgctgat ggggtttcta tgtttaactt tcaacaccct
     4981 atggatagaa tcagcactgc aagttttacc tatgaaacaa atcatagttt tattaacgat
     5041 gcttgccaaa atcacatcaa caaaacattt cctatagtta accataatcc aagctcatca
     5101 ataacgcatt taattataca agatgatgtt tggataggaa aagatgtttt gcttaaacag
     5161 ggtatcacac ttgggactgg atgtgtcata ggacaaagag ctgtagttac taaagatgta
     5221 ccaccttatg ctataattgc aggaattcca gccaaaatta tcaaatatag atttgatgaa
     5281 aaaacaatag aaagattatt aaaaattcaa tggtggaaat atcattttgc tgatttttat
     5341 gatattgatc ttaatttaaa aataaaccaa tatcttgacc tactagaaga aaaaatcata
     5401 aaaa
//
LOCUS       DARBBO010000101         5207 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.101, whole genome shotgun sequence.
ACCESSION   DARBBO010000101 DARBBO010000000
VERSION     DARBBO010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5207)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5207)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5207
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.101"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            45..3557
                     /locus_tag="SB854_001506"
     CDS             45..3557
                     /locus_tag="SB854_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HEG0957487.1"
                     /translation="MQKKSFLKIYGLIPFLLIAFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFAWRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWLCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGFIPLGALGMFLMAFLMPYFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFVKFEIN
                     VIYLFYFIALVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKIFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGTLSRHGQLNEFKAGFELACECLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINLQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KTFLEKLANKGINLNFDTNIHLIYFEDIVEDFKMQKTKIFSMMLAVSIIPSFILKSIF
                     TPSKNNLAVAAILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLEGIKSITFSDPTDALGVAKAVAKNNVTIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTTFEMKFKKSIFEGYGATETTPVASVNLPNHFDV
                     DYWLIHRANKEGSVGMPLPGTAVRIVDPNNYENLKTNEDGLILIGGHQVMVGYLNDKE
                     KTDEVVKEIDGIRWYNTGDKGHLDEDGFLYIVDRYSRFAKIGGEMISLGAIEEEIAKF
                     IDTEVVKFCATSLEDEKKGEQIVLLIECNNEIFEGVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAI"
     gene            complement(3565..4476)
                     /locus_tag="SB854_001507"
     CDS             complement(3565..4476)
                     /locus_tag="SB854_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEG0957488.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGIFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTIVVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFVSMPILIWTLL"
     gene            complement(4673..4758)
                     /locus_tag="SB854_001508"
     tRNA            complement(4673..4758)
                     /locus_tag="SB854_001508"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4722..4724),aa:Leu,seq:gag)
     gene            complement(4793..5131)
                     /locus_tag="SB854_001509"
     CDS             complement(4793..5131)
                     /locus_tag="SB854_001509"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEG0957489.1"
                     /translation="MKKVLFLLLACTAVAFAAETNAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
BASE COUNT         1849 a          736 c          851 g         1771 t
ORIGIN      
        1 taaattcttt tgtaaaataa gcgctaattg acgaggttta aataatgcaa aaaaaatctt
       61 ttttgaaaat ttacggatta attccttttt tacttatagc attcatcaat gcttttgtgg
      121 atttgggaca taaaattatt attcaaaata ctatttataa ggcctatgaa ggaagtgagc
      181 agttattttt aaatgctata gttaatgctt tgattttact tccttttatt cttatgcttt
      241 ctccttcggg ttttttagcg gataaatatc caaaaaatat tgtaatgaaa atttcagcaa
      301 ttttcaatgt tatactcact ttaataattt gcatttgtta ctatagcggt gctttttgga
      361 tggcttttat ttttactttt ataatgggag cacaagcagc gatttattca ccaagtaaat
      421 acggttttat taaagaactc gtgggaaaag actttcttgc tatgggtaat ggtgtaatta
      481 atgcggtaag cattgtggca atcttagcgg gaatggcttt attttcttta agctttgaaa
      541 gtctttatag ttctatgtat aatcaaacag atgaaatttt aaaagaagta gcgcctttag
      601 gaattgtgct aattttattt tcttgtatcg aagtattttt tgcgtggcgt ttacctaagc
      661 tcaaacaaac aaataaagat ttagttttta ataaaaaaga ctatattcgt ggaaaacttc
      721 taataaataa tcttaagctt gtttttaaaa ataaaactat ttggctttgt ataattggaa
      781 tttcattttt ttgggctata tctcaacttt atcttgtcag ctttcctgtc tttgctaaaa
      841 atgaactttt catagaaaat actttttatg tgcaaatttc actcgctttt tctggtatag
      901 gagtgatttt aggctcttta gtagctggta aattttcaaa aaattatata gaacttggat
      961 ttattccact tggtgcattg ggtatgtttt taatggcttt tttaatgcct tattttataa
     1021 gtttattaag ttatagtttt ttatttttct tttttggatt ttgcggagcc ctttttatca
     1081 ttcctttaaa tactttaatc caatttcatg ctaaagaaaa tgaattagga caaattcttg
     1141 caggaaataa tttttttcaa aatattgcca tgttgggatt tttgctcttg gcaactttat
     1201 ttgtaaaatt tgaaatcaat gtgatttatt tgttttattt tattgctttg gtaaccttta
     1261 taggaagttt ttacatactt ttaaaactcc ccttttcttt agtgcgtata cttttaagca
     1321 tagctttttt acaacgatac cgtttacttg tggaaggttt tgaaaatata ccagaaaaag
     1381 gtggagcttt acttttgggt aatcatattt cttttattga ttgggctgtt gtacaaatgg
     1441 caattccaag aaaaatttat tttgttatgg aaagaagtat ttattctaaa tggtatatta
     1501 aaatttttct tgataaattt ggtattattc ctgtatcaag tacaggaagt aagacgagtt
     1561 tagaactgat agcaaagcat attaaagaag gtaatttagt ttgcttattt cctgaaggta
     1621 cactttcgcg acatgggcaa ttaaatgaat ttaaagcagg atttgaatta gcttgtgaat
     1681 gtttaagtga agatgatgga aaaattattc ctttttatat aagagggctt tggggtagcg
     1741 ctttttcaag aagtgatgaa gaattttcag caagaaaccg cactttaaat aaaagaaaaa
     1801 ttgctatagc ttttggtaaa gctatgcctt tgcattctaa aaaagatgaa gttaaagcta
     1861 aagtttttga actttctttt atggcttgga aatcacaatg cgaagctatg catactatag
     1921 caagagcttg gatagataca gctaaaaaaa atctaaatca aatagctatt atcgatacac
     1981 tagctggaga tatttcttat agaaaaatgt tgactcttag tttatttctt aattttttta
     2041 ttaaaagaaa atccaaagag ttaaacatta accttcagcg tggaagttac gctcctaaag
     2101 aggaagctat aggaatttta ctacctgctt cttttgcaag ttctttaacc aatctatctg
     2161 ttttaatcgc agaaaaaatt gcagtaaatc ttaatttcac tgctggagaa aaagctctaa
     2221 aagcagctat aaaaaatgcg caaatttcac aaatttatac ttctaaaact tttttagaaa
     2281 aattagcaaa taaaggtata aacctaaatt tcgatacaaa tatacattta atttattttg
     2341 aagatattgt agaagatttt aaaatgcaaa aaactaaaat ttttagcatg atgctagcag
     2401 ttagtattat acctagtttt atactcaaaa gcatcttcac tccttcaaaa aacaatcttg
     2461 ccgtcgcagc tattttattt agtagtggaa gtgaaggttc tccaaaaggt gttatgctca
     2521 ataaccgtaa tattttaagc aatatagcac aaatttctga tgtgctttgc acaagaaata
     2581 atgatgtcat tctctcatct ttaccacctt ttcatgcttt tggacttacc gtaactacat
     2641 ttttgccttt gcttgaaggt attaaaagca tcactttttc agatccaacc gatgccttag
     2701 gggttgccaa agctgttgct aaaaataatg tcactattat gtgtggaact tcaacctttt
     2761 taggaattta tgcaagaaat aaaaagcttg atgctttaat gtttgaaagt ttaagaatag
     2821 ttgtatcggg cgctgaaaaa ctaaaaaatg aagtaagaac tacttttgaa atgaagttta
     2881 aaaaaagcat ttttgaaggt tacggggcta cggaaaccac gcctgtggcg agtgtaaatt
     2941 taccaaatca ttttgatgtg gattattggc ttatacatcg tgccaataaa gaaggaagcg
     3001 taggaatgcc tctacctgga actgcggtac gtattgttga tccaaataat tatgaaaatt
     3061 taaaaacaaa tgaagatgga ctcatactta taggcggtca tcaagttatg gtaggctatc
     3121 ttaatgacaa agaaaaaacc gatgaagtgg ttaaagaaat tgatggcata agatggtaca
     3181 acacgggaga taagggacat ttggatgaag atggtttttt atatattgtc gatcgttatt
     3241 ctcgctttgc aaaaattggc ggagagatga tttctttggg tgcaatagaa gaagaaattg
     3301 ccaaatttat agacactgaa gtggttaaat tttgtgccac atctttagaa gatgagaaaa
     3361 aaggggaaca aattgtttta ctcatagaat gcaataatga aatttttgaa ggagtatgtg
     3421 aggctataaa aaattctaat atacctacac tttttaaacc tagatattat tttcaaatag
     3481 aaaaaattcc cctcctaggt tcaggaaaag ttgatcttaa aaaagttaaa gaattagcta
     3541 aaaatttagc catataattt gagcttataa caaagtccaa attaaaattg gcatagaaac
     3601 aaaagcaaaa agaactccaa aggctacagc acttacggct aaattactat ctagtttagc
     3661 tttcattacc atagctcctg ctaaagtcat agtaggagct gcactttcta taatagcaac
     3721 gatggtagaa tcttttaatt ccaaattaaa tatttttaaa caaaatacaa aaaataaagg
     3781 agctaaaatc attttagcaa agatgacaac tattgtaggt ttgtaagagg ttttaatcgc
     3841 cataaagcca agtcctaaac ctatagcaaa aagtgcaaca ggggttgcag aggcaccaaa
     3901 taaacgaata ggagagaaaa taaattcagg taaagtaatc aatttacaca aaaaaccaaa
     3961 aagcaaagct aaaaaaggtg gaaaactaag aattttttta acattagcaa gcaaactgac
     4021 tttttctcca tttcccaaag aaagtataaa aggtccaaaa agtgatatag gtaaagttgt
     4081 ggctaaagca tcgtaaaata taacttcagc gctaaattgt gggtcattaa atataccagc
     4141 aacaataggc atacccacaa atatagtatt tccaaaacaa gaaagcaaaa acatactgac
     4201 taaagttact ttagaaaaat gaaaaacttt tccaataaga atagcaaaaa aagctgctag
     4261 tatacagcta aacaatccaa taaaaataaa aataatcaat gaaaaatcaa aatttaaatg
     4321 atatgcttta tcgaaaatca aacaaggtaa agcaaaaata atagcaaaat ctaaaaaagt
     4381 cctagcttgt ttttgcttta aaacgccaat tcttttggca aaatatccgc ctgcaagtaa
     4441 aataaaaatt gtaaataatg gtataaaaac aaacattgaa taatcctttt taagggatgg
     4501 tttttgaaaa cggatagaat tatattcttt atacttaaaa aaaatcttaa tattttttaa
     4561 gttttttaaa aaaaccaata ttttttattt tttgtaactt taagaaattg taagttgaaa
     4621 tttgattttg aatagttagt attttaagtt gaatgattat aattttaaat aatggtgcgg
     4681 ttagcgagat ttgaactcgc acacgcggag cgcaccaccc cctcaagatg gcgtgtctac
     4741 caattccacc ataaccgcat agaaaaaagc ccaaaaaggg ctttgataag ttttattgta
     4801 aaactataaa aggatttgcg taaagtgcta ttagcgcgat aacaagagca tagataactt
     4861 gtgcttcaat catcgctaaa gcgataaaca tagttgtcat taattttggc ccaagaccag
     4921 ggtttctagc tgttcctgca attgttgccg ctgcagtatt acccataccg atagcaccac
     4981 caagtgctgc aacaccaaga cctaagcctg ctgcaagaac tgaaaatgct ttaatccata
     5041 cattaatagc ttcttgctct actggagcat tagtttcagc tgcaaaagct actgctgtac
     5101 atgctaataa taaaaaaaga acttttttca ttatcttaac ctttctataa aaaaattttt
     5161 ttcaattttt aaatcagttc ggcttgcgta tccctactta agactta
//
LOCUS       DARBBO010000102         5171 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.102, whole genome shotgun sequence.
ACCESSION   DARBBO010000102 DARBBO010000000
VERSION     DARBBO010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5171
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.102"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(43..237)
                     /locus_tag="SB854_001510"
     CDS             complement(43..237)
                     /locus_tag="SB854_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEG0957490.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            377..1024
                     /gene="rpe"
                     /locus_tag="SB854_001511"
     CDS             377..1024
                     /gene="rpe"
                     /locus_tag="SB854_001511"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEG0957491.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFVDLFISLKPKFISFHMESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTPIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLIHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            1021..1782
                     /locus_tag="SB854_001512"
     CDS             1021..1782
                     /locus_tag="SB854_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HEG0957492.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     GRFQSFVKVKEIPKNITELTGITYEMVENASSLAKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISKALNECSFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENMHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTARIKQK"
     regulatory      1804..1908
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1965..3257
                     /gene="thiC"
                     /locus_tag="SB854_001513"
     CDS             1965..3257
                     /gene="thiC"
                     /locus_tag="SB854_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HEG0957493.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFGIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQINAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGIQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVIDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     gene            complement(3249..3767)
                     /locus_tag="SB854_001514"
     CDS             complement(3249..3767)
                     /locus_tag="SB854_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957494.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKLKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(3757..4284)
                     /locus_tag="SB854_001515"
     CDS             complement(3757..4284)
                     /locus_tag="SB854_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957495.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSISFILLVYFTYTIKIA
                     LINSSINNEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            complement(4281..>5171)
                     /locus_tag="SB854_001516"
     CDS             complement(4281..>5171)
                     /locus_tag="SB854_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HEG0957496.1"
                     /translation="IVKASIYRGNKLISSNEKTFDKSENLLEYVKNLSKHFLFYHTAL
                     FLDAKEQGLIPSTNIQDCEHFNIGKISLQHILFNNALVYTATEHVEYYSELFEEYRGL
                     DFLYSPFALLYYNMQKEKQPDDQILLYGFKQGHLLAIIVAKGNTILYGDFKIFEQELG
                     LELELPSEDNQEIENNNDDTEVTLDNFNEALNNKFDLLDQENNLETLDNNDNFNLDEL
                     NQFSNDMELCRYIITSIEKFYNDDKYAGVFINGILLYSESDINISAIDFLESETFLEI
                     KTKQINTLDLMIELMQKELK"
BASE COUNT         1737 a          661 c          904 g         1869 t
ORIGIN      
        1 tttaaattgg aaattttaaa attgaggaat aaatcctcaa aattatttag aattttgttt
       61 ttttagagtt cttagagtag aagctgcaat tctcattttt ctcgtggtgc catcttctaa
      121 agttacacga actgttctga gattaggtaa aaagcgtctt tttgttttat tgttagcatg
      181 gctgacatta ttacccacca ttggaccctt gcctgtgatt tgacatactc ttgccatttt
      241 tttgtcctta tgaaaatttt taaatggaga ttttatcaaa attaagctta aaatattcca
      301 taatttatag tttttttaat atataagtcg ataaaatatt atttatcaca tttatatata
      361 gtttaaggtt ttgatcatgt atgtagctcc aagtttattg tctgcaaatt ttttgaaatt
      421 agaagaagaa gttaaagcta ttgaagctgc aggtgcggat cttttacaca ttgatgtaat
      481 ggatggacac tttgttccaa atttgacttt cggaccttgc gtgatcgaaa aaatttcaac
      541 tattagtaag ttgccattag atgtgcattt aatggttaaa gatgtaagta aatttgtaga
      601 tctttttatc tctttaaaac cgaaatttat ctcttttcat atggaaagcg aagttcatcc
      661 tataaggctt tgtgaatata taagaagtca aggaatccat cctgctattg ttttaaatcc
      721 acatactcct attgattcta ttaaacacat gctagaattt gtagatatgg tgcttttaat
      781 gagtgttaat cctggatttg gtgggcaaaa atttttacct ttgatacatg aaaaaatcaa
      841 agaattgcgc caaatgattg ataaaaaaaa tgctaaagtt tttatagagg ttgatggtgg
      901 tgttaatggt ttaaatgcta gtgatttaga agaatctgga gctgatattt tggtggctgg
      961 aagttatatt ttttcttcca atgattataa aactgcaatt tcatctttaa agcttgaatt
     1021 ttgagtttac agcaaattga tcagattatt tctatattaa ataagcaaag caagccttat
     1081 gattgggtga tgcaagagtt tgccaaagtt gaagaattaa aaaattttga tttagattta
     1141 gaaacttttg agcttttggg gttaggttta actttaaata aagataatat ttttactctt
     1201 aaaacacgca caacaaaaat taaagatgaa attttttgca tagtggatat agaaagtact
     1261 ggtggggtga gcaaggggga aattttagaa attggagcgg taaaaattca aaattctaaa
     1321 gaaattggac gctttcaaag ttttgttaaa gtaaaagaaa ttccaaaaaa tataactgaa
     1381 cttacgggta ttacttatga gatggtggaa aatgcttcaa gtttagcaaa ggttttaagt
     1441 gattttaggc tttttttaaa agacagtatt tttgtagcgc ataatgtgcg ttttgattat
     1501 agttttattt ctaaggcttt aaatgagtgt agttttggca ttttgcttaa tcgtcgtatt
     1561 tgcactatag aatttgcaca atgttgtata gaaagtccaa aatataaact agaggttttg
     1621 aaagaatttc ttggcgtgga aaatatgcat catagagcct tagatgatgc tttggcagct
     1681 gctgaaattt ttaaatattg ccttggaaaa cttccttatc atataaaaac tacagaagaa
     1741 cttataaatt ttacaaaaac tgcacgtata aagcaaaaat aaatatttaa agtgtataat
     1801 taaaacataa atgacgggag cttgtgtaac aggctgagag taagctaaaa gcttagaccg
     1861 aaccggatct ggataatacc agcgtcggga agatttataa atttcaatac tttaaaaatt
     1921 tatactcacc cttcatttat ccaaattttt taaaggataa atttatgaaa actcaaatga
     1981 attatgccaa agaaggtatt tttactaaag aaatgcagat tgttgcgcaa aaagaaaatt
     2041 taagtaaaga ttttttgctt gaaaatattg cttgcggtaa aattattatc cctgcaaata
     2101 ttaatcataa aagtcttgat ccaaatggta taggttttgg actgcgtact aaggttaatg
     2161 taaatttagg agtttcaaat gattgcgttg attatagcga ggaaatgaaa aaagtagagc
     2221 ttgctcataa atttggcata gaagcgatta tggacttaag caattatggc aaaacaagtc
     2281 gttttagaga cgagcttgtt aatgtttcaa aagctatgat aggaacagtt cctgtatatg
     2341 atgcggtagg atttttagaa aaagatttaa agcaaattaa tgccaaagac tttttagatg
     2401 ttgtatatca tcatgctaaa agtggggttg attttatgac aattcatgca ggtattaatt
     2461 ctcgcgcagc gcatattttt aaacaaagta aaagacttac aaatatagtt tcaagaggag
     2521 gctctgtact ttatgcttgg atgatgatga aagatgctga aaatcctttt tttgagtatt
     2581 atgatgattt gcttgacatt tgtttaaaat atgatgtaac tttatctttg ggcgatgctt
     2641 tgcgtcctgg ctctactcac gatgcaagtg atggggcaca aatttcagaa cttatagaat
     2701 tatcactcct tactcaaagg gcttgggatg ttgggattca agtaatgata gaaggtccag
     2761 ggcatatggc tattaatgaa atagaggcaa atatgcaatt agaaaagcgt ttatgtaaag
     2821 gagcgccttt ttatgtctta ggacctttgg taatagatat tggcgcaggg tatgatcata
     2881 ttagtggtgc tattggagga gctgtggctg cagctagcgg tgctgatatg ctgtgttatg
     2941 taacacctgc tgaacactta agacttccaa atttagaaga tgttagagag ggtatagttg
     3001 cgactaaaat tgcagctcat gcaggagata tagctaaact tccaaaagaa agagcaagag
     3061 atgatgagat gagtaaggct aggcaagaga tagattggga gaaaatgttt aaacttgcta
     3121 ttgatggaga aaaggccaaa aaaatgttta atgagcgtcg tcctgatgat ttaaactcat
     3181 gttctatgtg tggaaaaatg tgtgcaatga atactatgaa tcaaatttta aaaggcgaag
     3241 atgtgagttt agcttgaata aactttgaga gtaagatcta tagagatacc ttgctctcct
     3301 gctttaagat taagtggata atcaagcttg attaagttat tatagttttt tagagcatca
     3361 ataaaatcat aaagccttct aggattgttc attgtcgctt taatggctaa gcggtttttt
     3421 agatattttt cttgtttttc gggcttagtt tcttgaattt ttacattttg aaaatatttt
     3481 tgtaaaaaaa tatcaaaatt tcctatatta aaattttgct caaattgctc taaacttttg
     3541 ttgttttcgc ttcttagagt tgatatttta tcttcactaa agtcaaattt taatttagcg
     3601 gcctttaaga tagcaagttg tgagttttct ctaagatttg cttgtttata attttttaat
     3661 gtcggtaaaa gtaaaaataa gatcaaggct gtgcaaacgc ttataaaact taacgcgcaa
     3721 atgataagct ttaataaatc aatttcttct agacttttat ctttcatctg caactcctgg
     3781 aatttgttta ctaatactaa caaaacgata ccacccatta tctaagcgat aataggttgt
     3841 atagctttga tcaaagatgc tttttaaagg ggtttctaaa agtagagtaa acatttctct
     3901 tgtaggagtg actccgataa gctttaagga atattcgtct tgttcaacac tttcaagagt
     3961 aatgttatca gtttttacaa taatatcaaa tagatttctt aagctttctt taacaatttg
     4021 attttgagtg ttaaaatttt tcgctatttg gctttgatca aataaaattt cataaagcat
     4081 ttcattttgc ttagtttgat tttgaagcac tataacttgt tgtttttcat tattgataga
     4141 gctattgatt aatgcaattt ttattgtata tgtaaaatat actagcaaga taaatgatat
     4201 actaaaacca aaaagtccta gccaaatttt atcaaagagt gtgaaaatag gcttttttct
     4261 tggttgtatg aagctataag tcatttaagc tccttttgca tcaattctat cataagatct
     4321 aaggtgttga tttgtttggt ttttatctct aaaaaagttt cactttctaa aaaatcaata
     4381 gcacttatgt taatatctga ttcgctatat aataaaatac cattgataaa taccccagca
     4441 tatttatcat cattataaaa tttttcaatg ctcgtaataa tataacggca aagttccata
     4501 tcattgctaa attgatttaa ttcatcaaga ttaaaattat cattattatc caaagtttca
     4561 agattatttt cttgatcaag tagatcaaat ttattattta aggcttcatt gaagttatct
     4621 aaggtaactt cagtatcatc gttgttgttt tcaatttctt gattatcttc cgatggaagt
     4681 tcaagctcta aacctaattc ttgctcaaat attttaaaat caccgtataa aatagtattg
     4741 cctttagcaa caataattgc caaaagatgt ccttgcttaa atccataaag taaaatttga
     4801 tcatcaggct gtttttcttt ttgcatattg tagtaaagaa gagcaaaagg ggaatataaa
     4861 aaatctaaac ctctatattc ttcaaaaagc tcgctataat attctacatg ttcggtagcc
     4921 gtataaacaa gggcattatt aaacaaaata tgctgtaagc tgatttttcc tatattaaag
     4981 tgctcacaat cttgaatatt tgtactaggt attaatcctt gttctttggc atctaaaaat
     5041 aaagcagtgt ggtaaaataa gaaatgcttg cttaaatttt ttacgtattc taataaattt
     5101 tcgcttttat caaaagtttt ttcattgcta ctgattagtt tatttcctct ataaatagaa
     5161 gcttttacaa t
//
LOCUS       DARBBO010000103         5130 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.103, whole genome shotgun sequence.
ACCESSION   DARBBO010000103 DARBBO010000000
VERSION     DARBBO010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5130
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.103"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..513
                     /locus_tag="SB854_001517"
     CDS             <1..513
                     /locus_tag="SB854_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0957497.1"
                     /translation="KYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVI
                     YTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFY
                     SQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEV
                     ISFDKFSLGF"
     gene            complement(510..1241)
                     /locus_tag="SB854_001518"
     CDS             complement(510..1241)
                     /locus_tag="SB854_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEG0957498.1"
                     /translation="MKPIIIFLSLFLIPLFADDLKNGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(1216..1965)
                     /locus_tag="SB854_001519"
     CDS             complement(1216..1965)
                     /locus_tag="SB854_001519"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEG0957499.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGGDGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAEIIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCDTGVPHLVHFCQNLDEFDTILCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFTYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(1962..2567)
                     /locus_tag="SB854_001520"
     CDS             complement(1962..2567)
                     /locus_tag="SB854_001520"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEG0957500.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLDFKSISADKIAHKILDENA
                     LELEKIFSPFNLKNLLTKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKTRLD
                     SQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM"
     gene            2628..3617
                     /locus_tag="SB854_001521"
     CDS             2628..3617
                     /locus_tag="SB854_001521"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEG0957501.1"
                     /translation="MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKILENSDAFIIGEICINEGIVLE"
     gene            complement(3638..4832)
                     /gene="dcuC"
                     /locus_tag="SB854_001522"
                     /pseudo
     CDS             complement(3638..4832)
                     /gene="dcuC"
                     /locus_tag="SB854_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856491.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
BASE COUNT         1715 a          779 c          799 g         1837 t
ORIGIN      
        1 aagtatttag ctttaaattt gggtcagcaa atcagtattt ctaagatatt tatagaactc
       61 aaaaaaagat taaaaacttc aaaagatagt gtttatcaag ctataaaaaa attagaaaat
      121 acttatgtga tttatacctt aaaacatgat gaaaaaaaac ttcaaaagat ttattttaaa
      181 gattttggcc taagaaataa tctttgtatt tcaaaggatt tttcacattt atttgaaaat
      241 ttagttttaa gcgagttgtt taaatttaaa gaagaatttt tttataacaa atactttaac
      301 ttttatagcc aaatatctaa aattgcttat atttcaagtc caactttaga tattgatttg
      361 atcaagctac gtgctaagaa aattttacca aaggctttag aacttggaat ttttcatgtg
      421 atttttatca ctctttcaag cgaggataat ttttttgaac aaggggttaa atttgaagtc
      481 atatcttttg ataaattttc acttggattt taggtgttgt ttgagtttgt atcgtatttt
      541 tcaaggttgt atcgtttgat gatttttgta ataagattga tataatatcc cttgcgttca
      601 gaataagaat ctaaagtttt aatagcctct agccctgtta tctctttgcc ttcgctttca
      661 aatttagctc ttgcatcgcg aaacttttca taagcaaaat gacgatttaa atttaaaaca
      721 taagagtcaa cactatcttg cagactatca aaaatcttaa ttttatgttt tttatctgga
      781 tgtcttaaat caggaattaa acctttctca ccccaagtcc attctccaaa aagattgttt
      841 gcttctcttg cgaagcgact ggtacctgta gcactttcaa ctaaagcttg ggctataccc
      901 atggattttg gaattttttg aatacgtttt ttatattctg caaaatcata aagattttca
      961 atgcgatatt tgttttttat cgtgataagt ttttcaagat ttatttggtt tgaagtccta
     1021 aagcctgttt tgtaagcatc tttaaaaaag gcttcgataa aagctctttc ttgttcaatt
     1081 tttttaaagc tttgatcaaa catttcattc atttttataa aaaaaatttg tcttttttga
     1141 tctatatcaa gtttgtaata ttcctctcca aagccatttt ttagatcatc agcaaaaagt
     1201 gggattagaa aaagactaag aaaaattata attggcttca aaacaatact ttacctttcc
     1261 ttcaaaaaac aattcttcat ttttatatgt aaacccaacc tcttcaccac ttttaggagt
     1321 tattttaact ttattttgta cttttttatt taaaaatgcc agataaaaac aagcccccat
     1381 tcctgtgcca caagctaagg tttcatcttc aactccgcgt tcataggtac gaacttttaa
     1441 atgattttca tctaaaattt ttacaaaatt aacattggca ttatattttt gtctcatttt
     1501 ttgacaaagt attgtatcaa attcatctaa attttgacaa aaatgcacta gatgtggaac
     1561 tccagtgtcg caaagttgcc aagtttttcc taattcttca aaagtatttt gcacgctttt
     1621 tattttgcct aaagatactt caactttatc ttgatttacc tttgctttta ttatttctgc
     1681 accggttaaa aaactcatgt taggatttat tttgttaata tgatgtgcaa aatgtgccgc
     1741 agcccttgag ccattgccac acatagcagc ccttgagcca tcgttattat aaaattccca
     1801 ttcaaagtcg tatttttcat gaggcaatat cacgataaag ccatccccac ctatgccctc
     1861 ataacgattg caaagttctt tagctaaagc acttctatct tcttttctat cagcatttgt
     1921 tatgacaaaa tcattcccac ttgcacaata tttataaaat ttcacatttt tcctttagaa
     1981 atttcttgta ttactttaac acattcttgc ctaaaatcgg cataagagtt agtattttta
     2041 atgataaaat ctgctttttt aagtttttct tcaatatcta tttgagaatc aagtcttgtt
     2101 tttgcagctt ctaagctaag cttatctctt tgcatgattc ttttaaggct taattcttta
     2161 ggtgtgtaaa ttactatgac tttgcctaaa ttttcataag caccgctttc aaaaaaaaga
     2221 ggaatttcta caaaaaaagc tttattttct ttatctagaa tttgcatttg ttctaaaatt
     2281 ttagctcgaa ttttaggatg agtgaaattt tctaagattt ttttagcttc tttattgtta
     2341 aaaacaattt ctccaaggat ttttctatcg attttctttt cttttgtgag taaatttttt
     2401 aagttaaagg gagaaaaaat cttttcaagt tctaaagcat tttcatctaa aattttatga
     2461 gcaattttat ctgcgctaat gcttttaaag tctaaagaat tcgctatttc tataaaagtg
     2521 cttttaccac aagcaattga agcggttaca aaaaaagcat ttttcatctt atgccttatt
     2581 aaaacttttt tcgttaaaat acctttttag ttcttaaagg aaaataaatg aaaatttcat
     2641 atgaagatgc aggcgtaagt atagataatg gaaatacctt tgtagaggct ataaaacctt
     2701 tggttaaaga aacttttaat gataatgttg taggtggaat tggttctttt gctggtgctt
     2761 ttagaatgcc aagtggtttt aaaaagcctg tgattttagg tgcaacagat ggggttggta
     2821 ccaagcttcg cttggcaatt gatgctaaaa aatatgatac tatagggcaa gatttagtag
     2881 caatgtgcgt gaatgatttg atttgtaatt ttgctacgcc tttgtttttc ctagattatt
     2941 atgctacagc caagctcgaa gtagaagtag caaaggctgt tgtatcaggc attgccaagg
     3001 gatgtaagat ggcaaattgt gcattaattg gcggagaaac tgctgaaatg cctggaatgt
     3061 atgcaaaaga tgattttgat cttgcgggtt ttgcagtggg tatggctgaa gaagatgaga
     3121 ttgatagaag taaatttgtt aaaaatggtg atattttatt ggcactttct agttcaggac
     3181 ttcattcaaa tggttattct ttagctagaa aagtactttt tgaaagttta aaattaaaat
     3241 ttgatgacaa gatagagggt aaaaatttaa ttgatatttt gttagaacct acaaggattt
     3301 atgtgcgtga ttttcttaca ctaaagcctt atatcagtgc tctagcacat attacagggg
     3361 gtggtttagt agaaaattta ccacgcgttt tacctcgtgg tatgggtgca actatacgca
     3421 aacatcatct taaaactcct gaaatttttt atactatagg acaggctgta gaagaaagcg
     3481 aaatgtatag aagctttaac atgggagtgg gtttagtaat ggttgtagat ccttctaatg
     3541 taagtaagat tttagaaaat tcagatgcct ttattatcgg cgaaatttgc attaatgaag
     3601 gtattgtttt agaatgaaaa taaagcgtta atacgcttta tttttgtatt ttaagttcta
     3661 tttttgtagt gttttgttct tttggcaaag gattggtttg tgctagataa aaggctacaa
     3721 gtacatttac aagcatagcg ataagtaaaa gaggagtggt tcgttttata atatccattg
     3781 gagctacttt tgcaaatcca gctaaagcta tgattccgcc tgctattggt gaagctgcac
     3841 gacctaaaca agatgcaatt tctataggta aaactagagt aataggtgca acgcctaatt
     3901 ttgtagctat atcaggagct agttttccaa aagtattaaa agcggcaatt ccacttccca
     3961 taatcactgt ggcaaaataa actaaaaagc ttaaaatagc tatactcaaa agaattccaa
     4021 accatgcaaa atttcctgtt ccaagatttg aaaccgcgtt agcaaggata ttaactccac
     4081 caagtgcttt aatgccttca gcaaatactc cagcggcgat gattatgctt acgactgaga
     4141 taaaaatttc agccatagct tttaaaatca ccatcatatc ttcgcctaat tttctagcat
     4201 ttctgtgtct tgcaaattca acaagaaaaa ctaaagaaat gcttacaaaa tttgctgtta
     4261 caacatcgag cttgatagta aaaaaaatac gctataaata aaaatacaac aggtaaccaa
     4321 ggaaagagta tgtaaaaaag tagggcattt aggatcaatg atttgcggaa tttcaacttc
     4381 atcatttaaa acaccttttt ctttatctct tttatcaatc caagtagaat aaaaaggaat
     4441 caagatggca attaactaca acataagtaa tcacactata aatttgataa tttaaagaaa
     4501 gtcctacgac attatcactt tgtcctacca tatccgccat attgattgaa tttccatctt
     4561 ttggaccata atcaagcgca attaaagaaa gcacacatac agctgtaata ggacggattt
     4621 taagtgagat taaaacagga taaatacatg ctaacaaaag caatccagca tagctagaaa
     4681 tgacgatttt taaagccatt ccaacaacaa aagttccact taaaattaag tatttatttt
     4741 ttgatttttc ctgagggttt atttgctaaa aaagcaagtt ttgccgaagc attgatatgt
     4801 ttcatgtaag cagtaaagcc tgccacactc atgataataa accctactcc agaaagctga
     4861 cttttaaaaa tcgctgtgat aaaagataac tatcaagtaa aacatttaaa aagcttgtat
     4921 gctctctgct tggggctttt ggtataggtg ttcctgtgat gtaaaaagca aaaataagca
     4981 agataatatt tgaaagaaaa atacaaaaat gagattatat tttagtatat aataagcaac
     5041 gacaattacc gctaaaagtg tagaacatat cataaaaatt ggcatgattt ctcctaaagt
     5101 tattattagc ttttatttta gctaaaattt
//
LOCUS       DARBBO010000104         5118 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.104, whole genome shotgun sequence.
ACCESSION   DARBBO010000104 DARBBO010000000
VERSION     DARBBO010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5118
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.104"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            301..796
                     /locus_tag="SB854_001523"
                     /pseudo
     CDS             301..796
                     /locus_tag="SB854_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779308.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            810..1598
                     /locus_tag="SB854_001524"
     CDS             810..1598
                     /locus_tag="SB854_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957502.1"
                     /translation="MINSLNSNLNYDYNTSNFKQDKNIDFKINKHGVAVITGEGALPY
                     RGKKFEYNPKIFGLDESISKKDMQEFNNFMKSNALKDPNKIEKSPLKDFNPAYTKWDP
                     TTEKMMLGFFVSYSKMFHLGYDIIKKADEFYKEFDALISKDLSLNEFKTKYIDFKQRY
                     DEFVKEYEMAMGDKMLLSSDDEIITQQSEKPFKAIQGESKNKETYKDDSTRNELVKKL
                     LEGKFSTSKELELLFGMKFSDDDAGEFNKILSLNSTPKSIDIKA"
     gene            1719..2324
                     /locus_tag="SB854_001525"
     CDS             1719..2324
                     /locus_tag="SB854_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HEG0957503.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCAQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            2324..3340
                     /gene="mnmA"
                     /locus_tag="SB854_001526"
     CDS             2324..3340
                     /gene="mnmA"
                     /locus_tag="SB854_001526"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEG0957504.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(3392..3613)
                     /locus_tag="SB854_001527"
     CDS             complement(3392..3613)
                     /locus_tag="SB854_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG0957505.1"
                     /translation="MFFIVQLALGAPPLFYAFIMIASGNVMMALTHYAIGTAPVIFGT
                     GCVTLKKWWSTGFVISIVDIVVMIAVGLV"
     gene            complement(3735..3974)
                     /locus_tag="SB854_001528"
     CDS             complement(3735..3974)
                     /locus_tag="SB854_001528"
                     /inference="COORDINATES: protein motif:HMM:NF013132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG0957506.1"
                     /translation="MSRFYFYGLELWACFFGISLDATSVALLGLSLVLISGVLTFGEV
                     LAEKAAWNTLVWFSALVMMATLLGKLGVTQFLAEA"
     gene            complement(3913..4128)
                     /locus_tag="SB854_001529"
     CDS             complement(3913..4128)
                     /locus_tag="SB854_001529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HEG0957507.1"
                     /translation="MFITATAPNPLVLYFLSPLEIKSTPNASTFAKDKLKELVKMKNS
                     EKIMLSVFVSLLLLWAGALGLFFWNFS"
     gene            complement(4071..4415)
                     /locus_tag="SB854_001530"
                     /pseudo
     CDS             complement(4071..4415)
                     /locus_tag="SB854_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868355.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
     gene            complement(4638..4773)
                     /locus_tag="SB854_001531"
                     /pseudo
     CDS             complement(4638..4773)
                     /locus_tag="SB854_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857729.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:sulfate symporter"
     gene            complement(5011..5108)
                     /gene="ffs"
                     /locus_tag="SB854_001532"
     ncRNA           complement(5011..5108)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="SB854_001532"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
BASE COUNT         1963 a          745 c          858 g         1552 t
ORIGIN      
        1 agataaaaat gaaaatttgt tacaaaagca aacaaaccga gaataaaatt ttaagtattt
       61 aaagaaaatt cacttaactt tcaaagcaag attaaacttt tgctagaata agtcgatagt
      121 agttttaaag aacttacaaa aagaatttat gaaaggattt tcaatgaaaa agatttttgc
      181 tttattagct ttaacttctt tactgactag ttctgttttg ctgaggattt tttagctaaa
      241 ctcacaaaag gtgccttaag cgatacaagc ccgggtgtca aagaactcag ccttgaagag
      301 atgaaagaag tgaagggtgg gtatataacc tatttaaaac gacttagtga taatgaagtt
      361 atagcctttg ccaaacctga ttggaatttg gaattaactt tatttcaaga tagtaacgga
      421 gatcaatatt attggaatag agaaggactt gttcgatttg gtggaatgtg cggtatagaa
      481 actacaaatt gtttggttaa tggtaagcat tcctatatca atcaaaaaag actttgggaa
      541 actatgagta tagtgggcga tgacccttat cgtaactttc ttggatatac tgtgaaaaga
      601 aatattggta tttctaattt agggaaaaga tttgtgtatt tttcttatgg agtggctgta
      661 atcaacgaac aatcaggttc ttggtataga gtaaaatcaa gtcctgtctt tgaataatta
      721 cagagtagtt aaggaaatca gttcaaacta taaagacttt ttagaaagat atcttggtgg
      781 gtattctatc aagtaaagag gaaaaactaa tgataaatag tctaaactca aatttaaact
      841 atgattataa cacttcaaat tttaaacaag ataaaaatat tgattttaaa atcaacaaac
      901 acggagtagc cgttataaca ggagaaggtg ctttgcctta tcgtggaaaa aaatttgagt
      961 ataatcctaa aatattcgga cttgatgaaa gtattagcaa aaaagatatg caagaattta
     1021 acaactttat gaagtcaaat gctttaaaag accccaataa aatagaaaaa tcccctttaa
     1081 aagattttaa tcctgcttat acaaaatggg acccaactac ggagaaaatg atgttaggtt
     1141 tttttgtttc ttattctaag atgtttcatt tgggctacga catcatcaaa aaagccgatg
     1201 aattttataa agaatttgac gcacttataa gtaaagattt aagcttaaat gagtttaaaa
     1261 ctaaatacat agattttaag caaagatacg atgaatttgt gaaagaatac gaaatggcta
     1321 tgggtgataa aatgttgctt tctagtgatg atgaaattat cactcaacaa agtgaaaaac
     1381 ccttcaaagc cattcaaggc gaaagtaaaa acaaagaaac ttacaaagat gatagcacaa
     1441 gaaacgaact tgtaaaaaaa ctattagaag gtaaatttag cactagtaaa gaattagaac
     1501 ttctttttgg tatgaaattt agtgatgatg atgcaggaga atttaataaa atcctttctt
     1561 taaattctac accaaaaagt atagatatta aagcttaagg atttaaaagt ctttaaattc
     1621 ctaatcttaa taaaataaac ctattaaaac ttatataata aagaacttat tataaatttt
     1681 tagctagaat ggaatttatt ttaactaaag gttgaaaaat gaatgaaaaa ataagccaag
     1741 atttagaaaa atttgctaac ataccaaacc taaaaaatgc cgtaactttt tttggttcag
     1801 caagacttaa agaagataat ttttattatc agcaggctaa aattttggca caaaaatgtg
     1861 ctcaaaatgg tttttgtgtg ataagtggtg gaggtggtgg tattatgcgt gcagccaacg
     1921 aaggtgcttt ttcacaaaaa aataatacaa attcaatgag ttctgtaggg tttaatatat
     1981 ttttacctca cgagcaaaaa cttaatgatt ttgtagaata taatattact tttgagagct
     2041 tagccatacg caaaatggct cttattgaaa agagtctagc ttttgtgatc ttcccaggcg
     2101 gctttggaac acttgatgaa ttgtgtgaaa ttcttacatt aaaacaatta gaatttaaaa
     2161 aagatgttcc tattattttg tttgggagtg aattttggcg aggttttgat gagttcgtca
     2221 gaaattcttt actcaaactt gaagtgattt ctaaaggaga tgagttaaag tataaaatca
     2281 ctgacgactt ggattttata attaatactt taaaggaaat ttaatgaaaa ttctagtcgc
     2341 tatgagcggt ggagttgata gtacagtcac tgcttataaa cttaaaaatt taggtcatga
     2401 agttataggt tgttatatga aacttcatgg caaaccaaat tatcacgaag aaaatatcaa
     2461 aaaagtagaa aaagttgcaa actttttgca aattccttat catattttag acttacaaga
     2521 agattttaaa aacaaagttt acatgccttt tgtggatact tataaagagg gtaaaacacc
     2581 aaatccttgc gctttatgta accgttttat caaacttgga aaacttttag aatttgctaa
     2641 aagtttaggt tgtgaaaaac ttgccacagg gcattatgca agacttgaaa acaacttaat
     2701 aaaaaccgca gtagatgaaa gcaaggatca aagctatttt ttggccagtg cagataaaga
     2761 agctttaaaa tatcttattt ttccgctagg cgaaatgaaa aaagaagatg tgaaaaaatt
     2821 tgcttccact atagaggttt taaaatcttt tgccacccaa aaggaaagtt ctgaaatttg
     2881 ctttgttgaa gatacttatg tgcaagtttt agatcagttt atggatacaa aaattcctgg
     2941 agaagtatta gatagtagcg gaaaagtagt aggcaaacat gagggctata tgcactatac
     3001 cataggcaaa agaagaggct ttgaagtgcg tggagcgcat gagccgcatt ttgttttaaa
     3061 aatcaatcct aagcaaaacc aaatcatcgt aggaaccaaa gaagaactta aaatcagtga
     3121 atttaaccta aaaaatatca atctttttat agacgctaaa gagcttgatt gcgaagtaaa
     3181 aatccgctat cgttcaaaat ccacaccttg caaggtagaa atttatgaag ataaaagtgc
     3241 aaaaatcatc ctaaaagatc ctgtttatgg gcttgctagc ggacaaatgg cagtctttta
     3301 tgatcatgat aaagtcatag caagtggttt tatagaataa tttctaggaa ttaattccta
     3361 gaaattatta ataaaatcct aaaattttcc actaaacaag cccaacagct atcatcacta
     3421 ctatatcaac tatggaaatc acaaaacctg tactccacca ttttttaaga gttacacagc
     3481 ctgttccaaa aataacagga gctgttccta ttgcatagtg agttaatgcc atcataacat
     3541 tacctgaagc tatcataata aaagcataaa aaagtggtgg tgctcctaag gcaagctgca
     3601 ctataaaaaa caaaaaacat tgctgatata tgagctgtaa tggaagcaaa gaaatagtgt
     3661 gtatataaaa aagcaaggct taaaaatatc ataatagaaa tttccccaag tcccatagca
     3721 gaagcaaatt caccttaagc ttcagctaaa aactgtgtaa cgccaagttt gccaagtaaa
     3781 gttgccatca ttacaagagc tgaaaaccat actaaagtat tccaagcagc tttttcggcc
     3841 aaaacttccc caaaagttaa aactccacta atcaacacca aagacaaccc aagcaaagcc
     3901 acactagtcg catcaagaga aattccaaaa aaacaagccc aaagctccag cccataaaag
     3961 taaaagcgag acaaaaacac tgagcatgat tttttcacta tttttcattt ttacaagttc
     4021 ttttaattta tctttagcaa aagtagaagc attaggcgtg gatttaattt ctagtggaga
     4081 gagaaaataa agcaccaaag gatttggagc tgtagctgta ataaacatag ctgatgaaat
     4141 aggattggct cttgataatt taccaaagaa agataagtgc ctattttatt ttgtgttcca
     4201 tcttcaggag tggatttaaa acttcttgca ataacttaaa ctataggatt tatgatagcc
     4261 cctgctcttg gagtatttga aggagtaact ggagctaaaa tagtttcaca aaaagctata
     4321 gaataagcaa tacctaaggt ttttttacca agaatactga taaaatgata agccaaatgc
     4381 tctccaagtc ctgttttaat aactccacga gccacaataa tagaataact ataagctaaa
     4441 taagagaatt tgaaaaacca cttaaagcgt cttttatacc cgttttagat tttaaatttg
     4501 atataacagt atttaccttt tcatcttata ctcttttgat ataaaaaatc aagtactgaa
     4561 gtatttaaag gaaattttag tctcatcaat aagttgttgc gtagaagttt tcgaagtagc
     4621 tttggtgtaa attttactta gattttcaat tgggtagtgg taatacccac taagagctac
     4681 tatggcaata gctataaaag gcattacttg taaaatcact gccataatca cagcaataaa
     4741 aagcccaaga aaatgccaag aattatcttc caaacctaca aggagtaggt ataggccaaa
     4801 acacagttgc aattaaaata cacagcacca acaagggaat tttctttcta tccattgttt
     4861 atcctttgat attggtaatg taatttacaa tgcttaaatt ctagttaact aatattttaa
     4921 taaatcttaa aattataatt tttaaataaa tttttaattt ataaaaaagc tagcctaatt
     4981 gaaaaatggg aattttaaaa tgaataaaac ccttccccag ataactgcgg cacacactaa
     5041 aatcaagtgc tctgctgtgt tcccaccctg aagcggtgct taaaaatagc attgcacagg
     5101 tctaagaaaa ggctctaa
//
LOCUS       DARBBO010000105         5109 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.105, whole genome shotgun sequence.
ACCESSION   DARBBO010000105 DARBBO010000000
VERSION     DARBBO010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5109)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5109)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5109
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.105"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            168..1154
                     /locus_tag="SB854_001533"
                     /pseudo
     CDS             168..1154
                     /locus_tag="SB854_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881065.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
     gene            complement(1189..1830)
                     /locus_tag="SB854_001534"
     CDS             complement(1189..1830)
                     /locus_tag="SB854_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HEG0957508.1"
                     /translation="MRNFFCKFVLALVFYSSFALANNSFITLNPSLPSSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFTFAQYKDEQNG
                     KDASYSDSLSHKLADVYFVSYFLNKQRNFSNLDEFYDIGLKAMNVNKNEVLNFLNTPK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(1916..3773)
                     /locus_tag="SB854_001535"
                     /pseudo
     CDS             complement(1916..3773)
                     /locus_tag="SB854_001535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
     gene            complement(3861..4670)
                     /gene="dsbI"
                     /locus_tag="SB854_001536"
     CDS             complement(3861..4670)
                     /gene="dsbI"
                     /locus_tag="SB854_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HEG0957509.1"
                     /translation="MSCIKMKDKCRNFSLSKWQDTREPWLILIIVTIGLTCIAHFLFQ
                     EYLFMEPCEQCVYIRFDMLVMAISGMIALINPTNNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLHEWAPSWFLPTGECGMDTPVVPKNAY
                     NHLNAFQKFFIGTLPDFENGLYSNGWYLIPSLKFMNMAICCLIAFLCCFVVLFAMFIA
                     YVLDKNKPNAKIFALVIVILVLVFKFIGEPKNPNQNIASLIHLNQVVLRCS"
     gene            complement(4667..5026)
                     /locus_tag="SB854_001537"
     CDS             complement(4667..5026)
                     /locus_tag="SB854_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide isomerase"
                     /protein_id="HEG0957510.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASVLSEGKEYVILKNPIANADNY
                     SVGLKAMNVSKADFENFLKTPEAAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAI
                     NSPEALIEITKELSKQK"
BASE COUNT         1784 a          877 c          724 g         1724 t
ORIGIN      
        1 gaaaaaactt tatttttgct ttaaatatat aagttctatt ttaaatataa acgaatatta
       61 ttttaaggtt taaagctttt ttcttaaaat gtaattaggt tttattgact ttttctaaat
      121 aaagtcttat actgaattta aattacgcaa aataaggagg gaaattgatg aataaatttt
      181 ctatagtttt aactttgttg ttatgtggaa gttgtgcttt agccttagat ccaaatttgg
      241 aaaaaactaa gagtgcaaca ggtattgatc tgcctactgc caaatggaat ttacctaagg
      301 aattaaatga agatggcact atagatgaaa ctaaaatgcc aaaaaattca gaatatagca
      361 aaatggttat tttgggaaat aaaattctta atgaaacaag caaatatgtg ggtccacaag
      421 ccaaagatcc taaaaaaaag atttgcggga aataatcttt cttgttcaag ctgtcatact
      481 aatggtggaa gtgtgcaaaa tcaatcgggt tttgtaggaa tttgggcaag atttccacaa
      541 tataatgcaa gaggagataa agtaattacc ttagcagata ggatcaatgg ctgttttgaa
      601 cgctctacga atggcaaaag aatgcctagt gatacacctg aaatgaaagc catgctaact
      661 tatatgcaat ggttatctca aggagttcca gtaggagcta agatagaagg acagggactt
      721 aagaagatag atttcatctt aagagcagct gatcctaaaa aaggtaaggc aatttatatg
      781 gataaatgtg ccgtttgtca tcaagaaaat ggattagggc ttaaaaatga ggatagcaca
      841 ggggcgtatt atctttatcc accactttgg ggtgatgata gttataatac aggagctgga
      901 atgtatcgtc tatcaaagct gcttcttata ttaaagaaaa tatgcctcaa ggtgcgcctg
      961 acttaagtct tgaagatgct tatgatgtag cagcttacat gaattcacaa gctcgtccta
     1021 ttaaagcaaa tagaaataaa gactttccag atagaaagat taagccttta gatatggatg
     1081 taggacctta tgatgatagc ttttctacaa cccaacatcg ctatggacct tatacaaata
     1141 tgatcaaaaa ataattttta aggcaatttt tattgcctta aaaatttatt atttcatatt
     1201 acttaatttt ttaactagat cttctaaatc ttgcatcgaa ttgattgcgc ttgggttaat
     1261 ttgatatttt ccattaacaa caaaagcagg ggtaccatag gttttagcta tatcattagc
     1321 tctttgaaac tcgcttaaaa tttctttagc ttttggggta tttaaaaaat ttaatacttc
     1381 atttttattt acattcatag cctttaaacc tatgtcgtaa aattcatcta aatttgaaaa
     1441 atttctttgc ttgtttaaaa aataagaaac aaaataaaca tcagcaagtt tatgagataa
     1501 actatcagaa taactcgcat ctttaccatt ttgctcatct ttgtattgag caaaggtaaa
     1561 aagctcattc atttctttgg aaaattcccc attcattaaa cttacaggat agagtttaaa
     1621 atgtaaattt ggaaaagctt ctctcagttt ttcaagagtt ccaaatttat gatgattata
     1681 acaatgtata catttataag aaaatgcttc tattacacta ttttcagagc taggtaaact
     1741 tggattaagg gtaataaaac tattatttgc taatgcaaaa cttgaataaa atacaagagc
     1801 taaaacaaat ttgcaaaaaa aattacgcat attatatcct tggttaaata aaattttcaa
     1861 agataatttt atttaaaaaa aataaataag cccaaattta tttttgggct tattgttatt
     1921 ttttaggatt gaatgcttga tcaacactaa aaggcattgc ttgataaccc gtacctgaac
     1981 cgctaaatta aatttgaacc gaaggttcct cttagcaccc cagttaaatt catcaatttc
     2041 aggttttggt tccccaagac ttacaccttt gctaagatca aaagccattc cagctgttgc
     2101 gctataaacc ataatagaat ctttatctgg ttcatattga gttaaagaag ttacaggaga
     2161 aaaccattta tttccacgat ttttaccata ttcccaaatt tgttccacag ttttattttg
     2221 ctgatcgatt ttataaatta cagaacgaga atatttttga cttgcaaatg caggttgttc
     2281 agctcctctt gcatcaccat tatcaaaaac acttatataa atataacgct tgtttgattt
     2341 actatcaatt ctccagcctg tatgctgcgt ccaagtgaaa tcaaatccac cattttcatt
     2401 ttcataacct gggcatttgc tataatcatc atcgcaaaca atttttttgc catttttatc
     2461 tacaggctgc aataaatatt tttgaaattc tttattccat cctttatgtg cccctaaaat
     2521 ccattttatt tttttatcac gaccaatttt aacaacagca ctttgatggc gactagaaat
     2581 aataatacta tcatcacttg aatcataatc aacgctattt acatgagccc aattcctacc
     2641 tatacctgct atatctctaa atttgtcgct ttcatccatt ttggcaagct cttcatcgct
     2701 taaagtttta cccgctttgc ttgcatctat atttaaacac actgcacctt gatctaaagc
     2761 tttgataatg gtacttctat aaggatctaa aatctcatac aatctccaat catcaacaac
     2821 attaccattc tcatctactt ctacaatagt atcacgcact gtgcgtacat gcttaccatc
     2881 tggacgtaaa gtatttgctg aagctactct taataaataa tgcccatttt gcatattgtc
     2941 catagcatga gaaaaatcta tataggcagc aggtaatttg cgattgaaaa tttctcttcc
     3001 taagatatcg tattttacat atctttgacc aaatccccaa gttaaagctc catctttgtt
     3061 ttgatgaaag cccaacataa ttccacgatt gtaaatatta ccccagttta ttagtttatc
     3121 gttatcaaaa taccatctga tttcaccctt gatatctatg ataaagacat ttgaattttc
     3181 atcccattcc atagcaccac ctacaggatt attccataca gattgtgagc ctttgccaga
     3241 ttgttttcca ggagcattat ttactaaata taacctatct gaaaattttg gatccatttt
     3301 taatactttc acattttcaa aaggagttcc tctttgatca gtacttccac ttggttctat
     3361 gctaacccct ggagttgtaa ttttataaat ctcatcaatg actttttgac ttttaccatt
     3421 tgcagtttta gtataactta cctttactgt atttaaataa gaaggataaa gtccaaaaat
     3481 aggaattcca ccataagtct tagccatttt agaattcaca ttataagaga tagtttggcc
     3541 atttggttta ggaacaatgg ttacttttat atcacttaaa acataggcat tatccatgat
     3601 aatagcggtc aaaggagaca atccataagg attcatttta atcgcaccta tttgcccttg
     3661 aatttgccaa tctattttcg ctccactagg accacccatg gccataaagc attaggtgca
     3721 agtagggtag aacccaccaa aagtgccatg caaagagttt tgctaagtct catgataaat
     3781 cctttaaaat tatttaagcc atcctaaaat agcttaataa aattttaata atacgcaaca
     3841 aaaataattt gttgcgtatt ttaagagcat cttaaaacga cttgattcaa atgaattaaa
     3901 ctagctatat tttgatttgg attttttggt tcgcctataa atttaaacac caaaaccaaa
     3961 ataacaatca ccaatgcaaa aattttagca ttaggtttat ttttatctaa aacataggct
     4021 ataaacattg caaaaagcac gacaaaacaa cataaaaatg ctataagaca gcaaattgcc
     4081 atattcataa actttaaact aggaatcaaa taccaaccat tgctataaag cccattttca
     4141 aaatcaggta gagttcctat aaaaaatttt tgaaaagcat tgagatgatt ataagcattt
     4201 tttggaacta caggggtatc catcccacat tctcctgttg gcaaaaacca actaggagcc
     4261 cactcatgca aaggtaaatt aaatggataa ataggaattt cacgacatcc atctacacct
     4321 gcaaaaggat tttcagaatg aaccacttca tgaatatgat ttaaagttag acaatgctcc
     4381 aagccaagcc aaattccata aaaagctaag ctataagaaa aaatttttat aatattattt
     4441 gtagggttga ttaatgcaat cataccgctt atagccataa caagcatatc aaatcttata
     4501 tacacacatt gttcgcaagg ttccataaaa agatattctt gaaataaaaa atgtgctata
     4561 caagtaagtc ctatagtaac tataatcaaa attaaccaag gttcacgcgt atcttgccat
     4621 ttagaaagtg aaaaatttct gcatttatct ttcattttta tacaactcat ttttgcttgc
     4681 taagttcttt agtaatttca atcaaagcct ctggagagtt gattgcactt ggaacgattt
     4741 gatattttcc attaacaaca aaagcagggg tgccataatt ttgcgaaata ggattggcaa
     4801 tttcataact ttttaaaagc tctgcagcct ctggagtttt taagaaattt tcaaaatcag
     4861 ctttacttac attcattgct tttaaaccga cactataatt atcagcgtta gcaataggat
     4921 ttttaagaat tacatattct ttaccttcac tcaatacact agcacttata cctgctaaaa
     4981 aagcacatac aacaatagat cttgctaatt ttactggaaa tttcattacc ctctccttga
     5041 aatttggatt tgataaaact ttttattaag tttttatgta ataactattt ataacactat
     5101 taaaataaa
//
LOCUS       DARBBO010000106         4998 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.106, whole genome shotgun sequence.
ACCESSION   DARBBO010000106 DARBBO010000000
VERSION     DARBBO010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4998
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.106"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..406
                     /locus_tag="SB854_001538"
     CDS             <1..406
                     /locus_tag="SB854_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957511.1"
                     /translation="NPFTGVFSSDKLYESQFEKSLNDLNTSAIINLASILQNDFNLHL
                     KDQNISFTELNSAKALIVANKENLLKLNDVNSNITKEVLGEKYTELLKTINQDKIIEN
                     IIKSTGVLYGIILLLCIFSLQKTARKNSIVPS"
     gene            complement(436..1137)
                     /locus_tag="SB854_001539"
     CDS             complement(436..1137)
                     /locus_tag="SB854_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEG0957512.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIKFLEKQGVKEDEISYNSPNIID
                     RLSDPYGNDTQATYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDNYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1134..2336)
                     /locus_tag="SB854_001540"
     CDS             complement(1134..2336)
                     /locus_tag="SB854_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEG0957513.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLVNAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASAVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKDKK"
     gene            2439..3788
                     /locus_tag="SB854_001541"
     CDS             2439..3788
                     /locus_tag="SB854_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HEG0957514.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYTKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLAQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQESKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIAAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLENLAKDED"
     gene            complement(3812..4855)
                     /locus_tag="SB854_001542"
     CDS             complement(3812..4855)
                     /locus_tag="SB854_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HEG0957515.1"
                     /translation="MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNVLNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFTKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         1833 a          820 c          809 g         1536 t
ORIGIN      
        1 aaatcctttt acaggtgtat tttcatcaga taagctttat gaaagtcaat ttgaaaaaag
       61 tttaaatgat ttaaatacga gtgctattat aaatctagca agcatattgc agaatgattt
      121 taatctccat ttaaaagatc aaaatatttc ttttacagag ttaaattcag ctaaagcatt
      181 gatagtagca aataaagaaa atcttttaaa attaaacgat gtaaattcaa atataaccaa
      241 ggaagtttta ggagaaaaat atacagaact tttaaagact ataaatcaag acaagattat
      301 agaaaacatc ataaaatcca ctggtgtttt atatggcatt atacttttgc tttgtatatt
      361 ctcactccaa aaaaccgcac gaaaaaattc catagtgcca agctaagcct taaagcttag
      421 cttgaaaatt catcatcagt ctttcaaata gtattctata gtagaaacca ctcttatggt
      481 tttgatataa ggtgtgtttt tatccctgtt gctgatgcta aattgccctt gagaagcctt
      541 ttttatcttg cctagatggc tgtttgaatc ttgtgcgaat tttatcgctg catttctagc
      601 attgagcgtt gcttcttcta tcatttgagg ttttatctca tttagcttgg tgtaaaggta
      661 ttctatgtca taattatcga ttttcgttac tatgccaaat tttgcaagac ttgaaatgtt
      721 ttctagtatg ctttttccaa gctttacatt ttgagtatag atgagtaaat tcgcagtgcc
      781 tatgtatcgg tatgtagctt gagtgtcgtt gccataagga tcgcttaaac gatctatgat
      841 gtttggcgag ttgtagctga tctcatcttc ttttacgcct tgtttttcta aaaatttgat
      901 gatattttct ttatcttgtt ctagttcttc gtataaattt gtaagattgt tgtttgatct
      961 tgtgaatttt ataggaagta tcaaagtatc cgcttcgact tctttttgac ttaaaccctt
     1021 tacacttaca cttctttcaa gtgttttaaa atcacttaaa gccttgttaa atccaaaagc
     1081 tagaatcaaa cttgccaaaa ctatggctaa agccataaag atattatttg ttttcatttt
     1141 ttatccttta ttttgattag aaaatatatc atatttgcaa ccaatacgca agcacacatt
     1201 acaaaagcaa ggattatcgg cgtatttgcg ttaatagccc caaccacaaa agaaataagc
     1261 cctgcaaaac caaattgcac cgttccaagc accgcagaag cagttccgct atgttcttta
     1321 aaccttgcca tagccaaagt cgtggtattg ggtgcgatga aaccaagcat agcgatactt
     1381 gtaaaaatac taagttcaaa aagcaagaaa tttggatgaa aaaaggcatt tacaagtaaa
     1441 atcacggtcg atataaacat tatcatcaaa gcttttgcca aaattttttc gctttcgtat
     1501 tttaaaacca atcttgcatt gatatttgca cagatgacaa aacctaaagc atttgcccca
     1561 aaaagcaagg caaatttttg ctcacttaag ctaaaaaact gcgtaaaaac aaagcttgat
     1621 cctgtgatat aagcaaacat cgccgccaaa gcaaaagaag cacatagtat ataaaccaaa
     1681 aagcgtttat cgcttaaaac aaatttgtag cttttcattg cttcatgatg ggaaaatttt
     1741 ttgtttttaa gatgaggtgc ggattctttt aaaccaaaaa gtatcatcaa aaaaagcaaa
     1801 attcccaaag caaacaaagt cgcaaaaata ctatgccatg aaaaatactc tagcaaaatt
     1861 cccccaaaag ttggcgaaag cataggagca agagaactaa aaaccatcat caaagcaaaa
     1921 atccctgcag cttctttgat ctcaaacaag tcattgacaa tagcccttgc gataaccaca
     1981 cctgcacaac ccccaagtgc ttcaaaaaat ctcaaagcga taaaagcata aatatcatcg
     2041 ataatcacac aaaacaaact cgaaacgatg aagaaaaata tccccaccaa agctggaatt
     2101 ttacgcccaa aaatatcact taaaggccca tatataagct gtcctaaagc aaaagcgata
     2161 aaaaaacttg cgatactaag ttgggttaaa aaagaattag tttgaaaact ttgctccaca
     2221 tgagaaagtg caggcaaata catatctgta gaaagtggtg ctatgcttga catcaaagca
     2281 aggataacga tgagtttaaa tttagcaaag ccgtgaattt tggtgtgttt ttgcatttgt
     2341 aatcctaatt attctaaaag aatgatttta acaagtcaat cttagaataa tctttgtttt
     2401 tctatgttaa atttagagaa aaattctaag gaaattttat gcaaaattta aaccaaaatg
     2461 aacaaatcaa atgcccaagt tgtggaagtt ttatcgatat cagcactgct ttatatgctc
     2521 aaattttaga taaagctaag caagaaatgc taaaacaaaa aaaagaattt gatgatgagg
     2581 taaatgctaa aagagctgaa tataccaaag ctttaaatga tttaaaaact caaaagatag
     2641 aacaagaaaa actcataaac gagcaagtaa gccaaaagct tcttttagaa aagcaaaaat
     2701 ttgaacaaga acttctcgcg caaaagcaaa atttccaaaa agaattcagc gagaaattta
     2761 acaaagagca tgaaaatgaa atgaaaatca tgcaagaaga actcgagaaa aaaagcaaag
     2821 aacttagcga gtttttaagc ataaaggctg aaaatgaaag gctaaaaaga gagcaaaaag
     2881 aaaatgaaga aagattgaaa tttcaagcca aagaagaggc ttttaaagaa tttaaagaac
     2941 aagaaagcaa aaatttggaa tttgaaagag aaaaaatgcg tcttgaattt caaaaaagca
     3001 ctcaagagca agatcttaaa tacaaagaac tagaaacgaa ttttaaaagt gtagcccaaa
     3061 agttagaaga cgcacaacgc aggatagagc aaggctcaca gcaactccaa ggcgaagcag
     3121 ccgaactact catagaagaa tacatacaaa gtgagtattt aagcgatgaa gtaaaagaag
     3181 tgccaaaagg cgtaaatgga gctgattgtc tgcatatagt aaaggataat tttggaaata
     3241 tttgtggaag tattttgtat gagagcaaac gcactaaaga atttaataaa gaatggcttg
     3301 ataaacttaa actagacagt atagccgcaa aaagtgatat agcagttttg atcacaaaaa
     3361 ctatgccaaa agataaagaa aaaacgcatt ttaaagaagg aattttgatt tgtactttta
     3421 atgaattcaa aggtgtttta gcagtgctta gagaaagcat tataaacgct tataaactca
     3481 aaaatgccct gcaaaacaaa gatgaaaaaa atcacatttt atacgaatac ttaaattcta
     3541 aggaatttaa cacgcaaatc acttttatac tcaaaactta ccaaaatatg aaagaagagt
     3601 tagaagctga aaaaagggct ttgcaaaata tatggaaaaa aagagaaaga gctatagaaa
     3661 atctaagttt taattccact gccatagtga gttctttaaa tgcgatattt agcgacttac
     3721 aaggtggaaa tttgataggc gaagaaggga ttaaaagtct tgaaaattta gccaaagatg
     3781 aggattaatt ttgggctaag cccaaaatta atcattctcc tgggaagtga tttggatttt
     3841 tccaaggtcc gtattttact tttatgtatt ctttagggtc taaattttgt tgtggtgaag
     3901 caaaatactc aggttttaat gatggggatt tgctataagc tgtatcaagt cctgcacgat
     3961 tttctgtagt ggttataggc attcttacaa aacctgtatt gacataagct gctatatcta
     4021 gcgcatcttc atcgcttaat ataggattat ccgcactcgc accaaaaggc atggctgatt
     4081 ttaaaaatct tgctaaaaat ggtatcatag ccatgtgtcc accatcagga tagataagta
     4141 aagatggata taaatgtccg ctaccttgtt cgtaattatc attttttacc ccaagtcctc
     4201 tttcgccatg acaagcaacg caattttctt caaagagctt tttcccacgc acagggtcag
     4261 ctgggcgatt tggaaaattc atcttagtaa aaaaatctcc ttcaagcttt acgccgtctt
     4321 tgatgccata agcttctttt agccatttaa aataagctaa aattgctttc atttctttag
     4381 aatcattagg aaatctatga gagtcagttc cgcccattcc gcgaattcta tcttcaacag
     4441 agatgatttt catcgtttct atgtcaagtc ttggataatt gtttaggaca tttaaaaatg
     4501 gaataacata tttttttgtc cctggcaaac cattgccgtc attgtccatg tgacaggaaa
     4561 tacaatttac ttcgttgctt gtctttttta gcttgctata gggtcctaaa gtactttctg
     4621 tcttgcttaa aagctctatg ccataacgga ttaaatcccc ttgcttgcct tttggaacat
     4681 cattgatgct taaattttta tttggccatt cttgcacagg tcttttggaa agctccttaa
     4741 aatactctac tccttccttg tcgcttaatt cttctcctac tttgtaatca ctcacgcttt
     4801 tagcactaag acttaaacta agacataagc caagtaataa aatgtgtttt ttcatgattt
     4861 tcctcctttt tatttgcagt tcaaattgat tttaatgtat tttttcttaa atattaagca
     4921 taataagaat aatttaaata aaattaaatt ttaaagtgtt actaaaagta atatatattt
     4981 aaagtatata attaatat
//
LOCUS       DARBBO010000107         4950 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.107, whole genome shotgun sequence.
ACCESSION   DARBBO010000107 DARBBO010000000
VERSION     DARBBO010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4950)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4950)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4950
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.107"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..1142)
                     /gene="nspC"
                     /locus_tag="SB854_001543"
     CDS             complement(<1..1142)
                     /gene="nspC"
                     /locus_tag="SB854_001543"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HEG0957516.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTI
                     EGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSL"
     gene            1266..2807
                     /gene="cueO"
                     /locus_tag="SB854_001544"
     CDS             1266..2807
                     /gene="cueO"
                     /locus_tag="SB854_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HEG0957517.1"
                     /translation="MNRRKFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGEFRLESAYYDRDK
                     MMVKEESNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGK
                     SENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            2809..3030
                     /locus_tag="SB854_001545"
     CDS             2809..3030
                     /locus_tag="SB854_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEG0957518.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            3031..3477
                     /locus_tag="SB854_001546"
     CDS             3031..3477
                     /locus_tag="SB854_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEG0957519.1"
                     /translation="MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            3481..4671
                     /locus_tag="SB854_001547"
     CDS             3481..4671
                     /locus_tag="SB854_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEG0957520.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDI
                     IFMP"
BASE COUNT         1780 a          790 c          804 g         1576 t
ORIGIN      
        1 cttaaagaat aatccttata agaaaattct cttatcattt gaagttcatt ttttgcattt
       61 aaaagcatga gatttggaag tcttatacca ttaaaagttg tgtttttcac aatggtgtaa
      121 tgaatttgat ctaaaaaaac aattttatcg ccgattttaa gctttttatc aaaggcgtat
      181 tctcccatta catcacccgc taaacaagta tttccagtaa gcaaatagga aaattcgctt
      241 tcttttaagt ctgaaatttt ttcattttct cttgtggcta aaattctagc atttaaaact
      301 tcacttgtat aaggcatgat gatagtatct ggcatatgcg cttcgcttga agtatctaaa
      361 atagcaattt gtttttcatt ttctatgata tctactacac tagccaccaa atttcctgtt
      421 tgccaaccca ccgcttcgcc tggttcaaga taaacttgca caccgtattt atcactgaaa
      481 tttttacaca aagcaataag cttttcaaca tcatagcctt ttttagtgat gtgatgtcct
      541 cctccaaaat tcacccattt catttgccct atccatttgc caaatttctc ttcaaaaacc
      601 tttaaaacag cttctaaagc accagcactt tcttcgcaaa gtgcgtgaaa atgaagtcct
      661 tctatggtac ttaaatccac attttcaaaa tctttagcac gaattccaag tcttgagtat
      721 cttccacaag gattgtaaag ttcttttggg gctagagaaa attcaacatt acaacgaaga
      781 cctaaggaat ttttttgtgt tttagcttga aatttatgaa attgagctaa agagttaaac
      841 actatatgat gagataagct ggctatttca cctatttcat cttctttaaa agcaggcgaa
      901 taagtatgaa tttctttatc catgtattct ttagcaaatt ttgcttccca aagtccgcta
      961 caagtacaac cttttaagta ttctccaaca attttcatcg ctcctgaaaa agcaaaacct
     1021 tttaaagcta aaagcacttt agcaccactt ttttcgccaa cacttgctaa aagctcacaa
     1081 ttttttctta atttatcttc ttctaaaata taagctgggg tttgaatttt ttcataaaac
     1141 attatttttc cttgattaaa ttgctaaaat cataacaaaa ttaaaccaaa ttttcaaaat
     1201 aaatatttac taaagttaaa aaaataatga ctataataca aaaaatcaag caaaaggaaa
     1261 aactaatgaa tagaagaaaa tttttaaaat ttaatgcact cactctagca agtatgggtg
     1321 tagcctatgc aaatcctatg catgatatgc actccatgca taaaaatcat tctataaatc
     1381 atgacttaga tacttctttt ataaactttg ctccaaaaaa tttaaagctt ttagatccaa
     1441 aacaattccc ccaaggagaa attttaaaag ccttgccttt actcaaaaat gaaagtaaag
     1501 aaaaaaatat ttttcgtgct accctagaaa tcaaagaaaa tcatatagag cttatcaaag
     1561 gtaaaaaaac cttattttat acttacaatg gcctcgtgcc tgctccaaaa atagaagttt
     1621 ttgaaggaga taaacttgaa attttagtca aaaacaaact caaagaagct acaactatac
     1681 attggcatgg cgttcctgtg ccacctgatc aagatggaag cccacatgat cctatcttag
     1741 caggagaaga aagaatatat cgttttgaaa ttcctcaaga tagcgcagga acttactggt
     1801 atcatccaca tcctcattat acggcttcta aacaagtttt tatgggttta gcaggggctt
     1861 ttgtgatcaa agcaaaaaaa gatgctttaa gtcatttaaa agaaaaagat ttgatgatta
     1921 gcgatttgcg tcttgatgaa aacgctcaaa ttccaaacaa caacctaaat gattggctaa
     1981 atggtagaga aggagaattt gtactcatca atggacaatt taaacctaaa atcaaactcg
     2041 ccacaaacga acgcatacgc atttataatg ctactgcagc aagatattta aatttacgca
     2101 tacaaggagc taagtttata cttgttggta ctgatggtgg acttatagaa aaagctattt
     2161 ataaagaaga acttttctta agtcctgctt ctcgtgtaga agttttaatc gacgctccaa
     2221 aagatgggga atttagacta gaaagtgctt attatgatag ggacaaaatg atggtaaaag
     2281 aagaatctaa taccctattt ttagctagta ttagcctaaa aaaagaaaaa ttagaacttc
     2341 caaaaaattt aaaaattttc aaacctttag aagaacctaa ggaatttaaa gaaataatca
     2401 tgagtgaaga tcatatgcaa atgcatggaa tgatgggaaa aagtgaaaat gaattaaaaa
     2461 tcgctcttgc gtctatgttt ttaatcaatg gcaaaagtta tgatttaaaa cgcattgatt
     2521 taagctccaa gcttggagta gttgaagact ggatagtgat aaataaatct cacatggatc
     2581 atcctttcca catacacggc acgcaatttg aactcatctc atcaaaactc aatggcaaag
     2641 ttcaaaaagc cgaatttaga gccttcagag atactataaa tgtgcgtcct aatgaagagt
     2701 taagacttag aatgaaacaa gattttaaag gacttagaat gtatcattgc catattttag
     2761 aacatgaaga tttaggaatg atgggaaatt tagaagtaaa ggaataaaat ggtaaaagtg
     2821 gaatttttag gccctataaa taaagaaaat ttagaacttg aagtaaaaaa tttaaaagaa
     2881 ttaaaagaaa ttttgcaaaa agatgagagt ttaaaagaat ggctagaact ttgtgctgta
     2941 tctttaaatg atgaaatcat ttttgatgaa aacaccaagt taaaagatgg tgataaaata
     3001 gcacttttac cgccagtttg tggaggctaa atgaaacatt ttacacttta tcaaggctct
     3061 ttagatattc ctaaaattta tagccaatgg tatgaatttt ccaaggataa aaactgcggt
     3121 gctttactga ctttttgtgg tattgtgcgt gaagaaggag gtattgaggc acttagtttt
     3181 gatatttatg aaccgctttt aaaaaaatgg tttgatgagt ggcaaaaaag agtagatttt
     3241 gatggtatta gcttgctttt tgctcactct ataggcgatg tagcgataca tgaaagctcg
     3301 tattttgcag gaattttaag caaacaaaga aaattaggac ttaaacttct taatgaattt
     3361 gttgaagatt ttaaagcaag tgcgcccatt tggaagtatg atgtgataaa caaagaaaga
     3421 atttatgcca aagaaagatc aaccaagctt tgcggtgcag gacttttaaa aggataaaaa
     3481 atgctaatgt cttatgaaga aagtttaaaa attttacatt ctcatatcaa aacttatgaa
     3541 aagattgaaa aaatagctct tacagagtgt ttaggacgca ttttagctca agatataaaa
     3601 gcccctaaaa atcagcctga atttccaacc tcggctatgg atggttatgc gatcaaattt
     3661 gaagatcaag acaagccttt aaaaatttta ggcctcacac ctgcgggtac tatgccacaa
     3721 tttagcgtac aaaatggcac ttgtgtaaaa acctttacag gctcactcat gagcgaagga
     3781 agcgatactt tagtccctgt tgaaaatata cgcatagaaa ataatactct ttttatagaa
     3841 aaaaaagttc cccaagcttt tgccgtgcgt gcggtaggag aaaactataa aaaagatgaa
     3901 attttactca aaaaaggcac aaggttaaat tatagcgaga tagctctttt agctgaactt
     3961 ggattttttc acattagtgt gtttataaag cctattgtag gggttttaag tagtggaagt
     4021 gagatcaaag atctaggaga agccttggaa aatcctgctc aaatccgctc ttcaaatcat
     4081 atcgccatag ctaatttagc taaaaattta aattgcgata caagggtttt tcctctttta
     4141 aaagatgatg agaaagccac tttttccacc cttgaaagtg ctttgcaaag ttgtgatatt
     4201 ttggttacaa cgggcggggt ttctatggga gattttgact ttttaaaaaa agccatcaaa
     4261 gaatacgaaa tcatcatcga taaagccgac ataaaaccag gtagacatat caaaatagct
     4321 aaggctaatg aaaaattcat catcgcctta ccaggttttc cttactcggc tatggtaatg
     4381 tttaatcttt acacaagaga gattttaaac tcttggttac ttcaacctaa agactatatt
     4441 tgcaaagcct ttttacaagg aagttacaag aaaaaaacac cttatttgga atttgtcgct
     4501 tgcaatatag agtttaaaaa tggacgcatt ttagccaatc ttgaaggcaa aaaagaaggc
     4561 tctagtgcga ttataaacaa tcttaacaat aaagctgccc ttatggtggt gccaaaagaa
     4621 tgtgaaatgt tagaaaatga aagtttagta gatattatct ttatgcctta aaattattta
     4681 aataatttta tttcgatttt aatcaaccct aaatttcaat aagtttcaaa ttcgcaacct
     4741 ccttttagtg gagtaattag ccctagtgga gtttcaatcc actagggttt attttagtcc
     4801 ctttttaaat ttctttatgg taaaattgca ctgagataaa tgagtttata gcaaatgttt
     4861 tagtcccttt ttaaatttct ttatggtaaa atagattttt catttaaatg atgatgagtt
     4921 aagttttagt ccctttttaa atttctttat
//
LOCUS       DARBBO010000108         4845 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.108, whole genome shotgun sequence.
ACCESSION   DARBBO010000108 DARBBO010000000
VERSION     DARBBO010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4845
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.108"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..762)
                     /locus_tag="SB854_001548"
     CDS             complement(<1..762)
                     /locus_tag="SB854_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG0957521.1"
                     /translation="MLINQTFEINSCDDVELNIKRTSKLEYRISYDDEKEMKAIVFII
                     GGYGANANIHFLDSYRNYIAKKFDVATINVFYHCFCQRPSDVEKYSTLADFTKEDLRL
                     MEKVLCKYNIPCDQLANNTVVSHCEYLSEIMTELKMLNRLPYDFEERLSATFIPSRGE
                     YQNFGIMAAIDHINALKDLVKRFPKFADLPKIYGGGSYGGYLALLIAKIAPWYVDGVI
                     DNSGSAVPPLNYIIGRELEFESKDTNGDMYIQGNHF"
     gene            823..2331
                     /locus_tag="SB854_001549"
     CDS             823..2331
                     /locus_tag="SB854_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HEG0957522.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKERKEITYKDFDLFSKK
                     LASEILKTLKNDNPTQVPVLIILPKGIDCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLNFNLDLPTLYTQDFESFDIDESLIKHAKEKHIDTNLLYVFFTS
                     GSTGIPKGVSIAHKSVIDYTFWVCETFKFDENEILANQAPFYFDNSILDIFSSVKSGA
                     TLHLLPNHLFAFPNKILECLEKEKVSTIFWVPSVLIYFANTEALNNFSLNTLKKILFC
                     GEIMPNKQLNIWRKHLPNALFANLYGPTEITDVCSFYIINRTFKDEELLPIGKACKNT
                     ELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDLL
                     YKTGDIVSYNEFGELLCYGRVDNQIKYMGHRIELGEIESVINSHANIKNSACIFKEDI
                     ICFYESEEEINFKAFLKDKLPSYMIPKNFIKLDKFKLNQNGKIDRKVLKELV"
     gene            2371..2598
                     /locus_tag="SB854_001550"
     CDS             2371..2598
                     /locus_tag="SB854_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG0957523.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFENIKKMLEIAMKD"
     gene            complement(2595..3665)
                     /locus_tag="SB854_001551"
     CDS             complement(2595..3665)
                     /locus_tag="SB854_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEG0957524.1"
                     /translation="MTAYLHIGTTNTGNQEKQGFLMQNEEKLLQKAYIYPKSLRVANR
                     HWALVDMVLELVQKEDILKKESVLSHITNERLLRAIENFKSESALHKDKKFIFSAEGI
                     VWDFSTKKHVEILEKIMRELGFTQIYIIVYFRDTLGYLNSHCSQDHKNNMGYYSADFA
                     PQDHPRKYIFDYEWICKTHAEVFGEENLIVRLLREDYVGGTLLKDFVYHLGLEWDESF
                     VLKQTKNESFNLLGMELMSRLNQKDLKQDNLNSLLFMARRKFEGSKEKRLKFAVQKDI
                     AKAYVDYFASSLEWVKNKYFPHKNSLFTPVNWEEYEQNYTLTHMLSKDWDDVADFIAQ
                     IIVSKNEIISSLKEQLELARKD"
     gene            complement(3687..>4845)
                     /locus_tag="SB854_001552"
     CDS             complement(3687..>4845)
                     /locus_tag="SB854_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG0957525.1"
                     /translation="KRTSKLEYRISYDDEKDIKAIVFIVGGFGANANISFLDFDREYI
                     AKNFDVVVVHVFYHCFCARQSIDQKYNPKLIPNQDDLERVNGILKNINLGHLSVNKDN
                     FEQIIPLIEQKVNKMKQAGLVDESQKIELSCDFIPPNGDYQNYGIMAAIDHINALKDL
                     VKRFPKFADLPKIYGGGSYGGYLALLIAKIAPWYVDGVIDNSGVCLPFLACILGREMN
                     QGEFYFEGSGYRLYCFVYKYWNRNMNSSYYFGDENYLIRAVLNSNHLQIQSNLNKNTI
                     FVSYHSIQDMGAPVQNKIELYKCYQELGYDATLHLIKDENDIDGRFVKSLEHGLRMTD
                     RALFRKELPLMLEKLQGRKSFMQENSISYPCGNKVFVFKDLEDKFELEMIN"
BASE COUNT         1722 a          803 c          614 g         1706 t
ORIGIN      
        1 aaaatgattg ccctgtatat acatatctcc attagtatct ttactttcaa attccaactc
       61 tctaccaata atataattaa gcggtggaac agccgaaccc gaattatcaa tcacgccatc
      121 aacataccaa ggggctattt tagctataag caaggctaag tatcctccat aagacccccc
      181 cccataaatt tttggtaaat ctgcaaattt tggaaagcgt ttaaccaaat cttttaaagc
      241 attgatatga tcaatagctg ccataatgcc aaaattttga tattctccac gcgaaggaat
      301 aaaagttgca cttagtcttt cttcaaaatc ataaggcaat cgatttaaca tttttaattc
      361 tgtcataatc tcacttaaat attcacaatg actgaccaca gtattgttgg ccaattgatc
      421 gcatgggata ttgtatttac aaagtacttt ttccataagt cttaaatctt cttttgtaaa
      481 atctgctagc gttgaatatt tctccacatc cgagggtctt tgacaaaaac aatgataaaa
      541 aacatttatc gttgccacat caaatttctt agctatgtaa tttctataag aatctaaaaa
      601 atgtatatta gcattagccc cataacctcc tatgataaaa actatagctt tcatttcttt
      661 ttcatcatca taactgatgc ggtattcaag ttttgaagtt ctttttatat ttaattctac
      721 atcatcacaa gaattgattt caaaggtttg atttatgagc atataaaggc cttttttatt
      781 aatttataga tattatatta caaaaaatta aaaaggtaaa tcatgacaac tcacatctat
      841 gattttttag aaaaaagttt aatcaaattt agcgaaaaaa ctgcttttgt agaacccttt
      901 gccaaggaaa gaaaagaaat cacttataaa gactttgatc ttttttctaa aaaactagcc
      961 agtgaaattt taaaaacttt aaaaaatgat aatcctactc aagttcctgt tttaatcatc
     1021 ttgcctaaag ggattgattg tttgatttca ttttttggag tggcactcag tggaaatttt
     1081 tatacccttt tagatgaaaa aagtcctaaa gaaagagtag aaaaagtcat agaggtttta
     1141 aagcctaaac tttttatcac ttcaaaggac ttaaatttta acttagattt acctacgctt
     1201 tatacacaag actttgaaag ttttgatata gatgagagtt taataaagca tgccaaagaa
     1261 aaacatatag atactaattt actctatgtt ttctttacaa gtgggagcac aggtattcct
     1321 aaaggagtaa gcatagcaca taagagtgtg attgattata ctttttgggt gtgtgagact
     1381 tttaaatttg atgagaatga aattttagcc aatcaagcac cattttattt tgacaatagc
     1441 attttagata ttttttcaag tgtaaaatca ggagcgactt tacacctttt acctaatcat
     1501 ctttttgcct ttccaaataa aattttagaa tgccttgaaa aagaaaaagt aagcactata
     1561 ttttgggtgc cttcggtgct aatttatttt gcaaatacgg aagctttgaa taattttagt
     1621 ttaaatacct taaaaaaaat acttttttgc ggtgaaatca tgcccaataa acagctaaat
     1681 atttggcgta aacacttacc caatgcctta tttgccaacc tttatggccc aacagaaatc
     1741 actgatgtat gttcttttta tatcatcaat cgcactttta aagatgaaga acttttacct
     1801 ataggaaaag cgtgcaaaaa cacagaactt ttagtttttg atgaaaatat gaatttcata
     1861 agtcctaaac aaataggtgt taaaggggag cttttcgtac gtggaacttc tttgtcttta
     1921 gggtattata atgacaaaga aaaaaccaaa caagctttta ttcaaaatcc tttacatgat
     1981 aattatttag atttactcta taaaacagga gatatcgttt cttataatga atttggagag
     2041 cttttgtgct atgggagagt ggataatcag ataaaatata tggggcatag gatagaactt
     2101 ggagaaatag aaagcgtgat aaattcccat gcgaatatta aaaacagtgc atgtattttt
     2161 aaagaagata ttatttgttt ttatgaaagt gaagaagaaa ttaattttaa agctttttta
     2221 aaagataaat taccttctta tatgatccca aaaaatttta ttaaactcga caaatttaag
     2281 cttaatcaaa atggaaaaat cgatagaaag gttttaaaag aacttgttta aataaatatt
     2341 ttataatttc aaaaaactaa aggagaaaaa atgcaagaaa tcaaacaatt ttttatcaat
     2401 atagaaagaa cagatatcaa tgagagtatg gaaaatctag taagtgaaga ttttatcgat
     2461 agtatcgata tcatggcttt ggttgccgaa atagaaaaat tttataaaaa acccttaaaa
     2521 gcagaattta tcacacctga aaattttgaa agctttgaaa atatcaaaaa aatgcttgaa
     2581 attgcaatga aagactaatc tttccttgca agttcaagct gttcttttaa agaactgatg
     2641 atttcatttt tagaaacaat aatttgcgct ataaaatccg ccacatcatc ccaatcttta
     2701 cttagcatat gggttaaagt ataattttgt tcatattctt cccaattcac aggagtaaaa
     2761 agagaatttt tatgcgggaa atatttgttt tttacccatt caagtgaaga agcaaaataa
     2821 tccacataag ctttagcaat atctttttgc actgcaaatt ttaatctttt ttctttgctg
     2881 ccttcaaatt ttcttcttgc cataaaaagc aaagaattaa gattatcctg ctttaaatct
     2941 ttttgattta atcttgacat aagctccatt cctaaaagat taaaactttc atttttggtt
     3001 tgttttaaaa caaaactctc atcccattca agtcctaaat gataaacaaa atccttaagt
     3061 aaagtccctc ctacataatc ctcccttaga agtcttacta tcaaattttc ttctccaaat
     3121 acctcagcat gagttttgca aatccattca tagtcaaaaa tatattttct aggatgatct
     3181 tgcggagcaa aatcagcaga ataatacccc atattgtttt tatgatcttg agaacaatgt
     3241 gagtttaaat aacccaaagt atctctaaaa tacacaataa tataaatttg agtaaaacct
     3301 aactctctca taatcttttc taaaatttct acatgttttt tggtagaaaa atcccaaact
     3361 ataccctcag ctgaaaaaat aaatttttta tctttatgta aagcactttc acttttaaaa
     3421 ttttctatag ctctaagaag tctttcattt gtgatatgac ttaaaacact ctcttttttt
     3481 aaaatatctt ctttttgaac caattctaaa accatatcca ccaaagccca atgcctattt
     3541 gccactctaa gactttttgg gtaaatataa gctttttgca aaagcttttc ttcgttttgc
     3601 atcaagaagc cttgtttttc ttgatttcct gtattagtag ttcctatatg taaatatgct
     3661 gtcattttat atcctttatc tttattttaa tttatcatct ctaactcaaa tttatcttct
     3721 aaatccttaa acacaaatac tttattccca caaggataag agatagaatt ttcttgcata
     3781 aaagattttc ttccttgtag tttttcaagc attaaaggaa gttcttttct aaataaagcc
     3841 ctatcagtca ttctaagtcc atgctctaaa ctttttacaa atctaccatc tatatcattt
     3901 tcatccttta ttaaatgtaa agttgcatca tatcctaatt cctgataaca cttataaagt
     3961 tctattttat tttgcactgg cgcacccata tcttgtatac tatgatagct tacaaaaatg
     4021 gtatttttat ttaaatttga ttgaatttga agatggtttg aatttaaaac tgctctgatt
     4081 aaataatttt catcaccaaa ataataagaa gaattcatat ttctattcca gtatttatat
     4141 acaaaacaat aaagtctata accacttcct tcgaaataaa attccccttg attcatttct
     4201 cttcctaaaa tgcacgccaa aaatggcaag caaacacctg aattatcaat cacaccatcc
     4261 acataccaag gagctatctt tgctatgagc aaggctaagt atcctccata agaccccccc
     4321 ccataaattt ttggtaaatc tgcaaatttt ggaaagcgtt taactaaatc ttttaaagca
     4381 ttgatatgat caatagctgc cataatgcca tagttttgat aatctccatt aggtgggata
     4441 aaatcacaag aaagttctat tttttggctt tcatcaacca aacctgcttg tttcatttta
     4501 ttaacttttt gctctataag aggaataatt tgttcaaaat tatctttatt aaccgataaa
     4561 tgtcctaaat taatattttt taaaatgcca tttacacgct ctaaatcatc ttgattggga
     4621 ataagctttg gattatactt ttgatcaata ctttgtcttg cacaaaaaca atgataaaaa
     4681 acatgtacca ctacaacatc aaaattttta gcaatatatt ccctatcaaa atctaaaaaa
     4741 gaaatatttg cattagctcc aaaaccaccc actataaaaa ctatggcttt gatatctttt
     4801 tcatcatcat aacttatgcg atattcaagc ttactggttc tttta
//
LOCUS       DARBBO010000109         4603 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.109, whole genome shotgun sequence.
ACCESSION   DARBBO010000109 DARBBO010000000
VERSION     DARBBO010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4603
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.109"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(50..673)
                     /gene="serB"
                     /locus_tag="SB854_001553"
     CDS             complement(50..673)
                     /gene="serB"
                     /locus_tag="SB854_001553"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HEG0957526.1"
                     /translation="MIRLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMTGEL
                     DFFESLQKRVSFLKGMSYKKVLELSSTLPLMRGAHELIQYLKSKNIQIVIFSGGFHEG
                     INPAMQKLGINLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKNFLNLKTDEVM
                     CVGDGANDLAMFNESGLKIAFCAKEILRSQADICVDIKDLKEIIKVI"
     gene            complement(673..1194)
                     /locus_tag="SB854_001554"
     CDS             complement(673..1194)
                     /locus_tag="SB854_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-binding chemotaxis protein CheW"
                     /protein_id="HEG0957527.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            complement(1199..3508)
                     /locus_tag="SB854_001555"
     CDS             complement(1199..3508)
                     /locus_tag="SB854_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEG0957528.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLELLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVVATDSNEKSTPQAELEAPKQEIATPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPTESGE
                     KKVPASGSNASSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLIEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            complement(3512..4468)
                     /locus_tag="SB854_001556"
     CDS             complement(3512..4468)
                     /locus_tag="SB854_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HEG0957529.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQIYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            complement(4461..>4603)
                     /locus_tag="SB854_001557"
     CDS             complement(4461..>4603)
                     /locus_tag="SB854_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HEG0957530.1"
                     /translation="HQNHQINKENIKYLNLASFAYERSFFVVEYQQEIKFREQKLRGQ
                     NV"
BASE COUNT         1345 a          932 c          634 g         1692 t
ORIGIN      
        1 tctaaaaaac tattttctat aaaatcacac caaagagaaa aatttttcat tatattacct
       61 ttattatttc ttttaagtct tttatatcta cgcaaatatc agcttgagaa cgtaaaattt
      121 ctttagcaca aaatgcaatc tttaatccac tttcgttaaa cattgccaaa tcatttgccc
      181 catcgccaac acacatcact tcatctgttt tcaaatttaa aaagtttttt aatcgttgta
      241 gcattaagcc ttttgaattt gaaaacatca tttccccacc aactagccct gttaaaatgt
      301 catttttatg atgcagataa tttgcaaaac cgaggttaat tccaagtttt tgcatagcag
      361 gatttatgcc ttcatgaaaa ccaccgctaa aaataacaat ttgtatattt ttagatttta
      421 aatattggat aagttcatgt gctccacgca ttagtggaag tgtgctactt aattctaaaa
      481 cttttttata agacatacct tttaaaaagc ttactcgttt ttgaagactt tcgaaaaaat
      541 caagttctcc agtcatagca tggcgggtaa tttcgcttgt ttgattaccc ttgccatgcg
      601 ctgtagctaa aatatcaatg gtttcaccat ccattaaagt agcatcaaag tcaaaaacac
      661 aaagtctaat cattaaaatt cgcgcttaag caaagcttct actttgagta tagttaagat
      721 attttcatct ctttttccta taccataaat catacctttg tctttaacta aagtttcagg
      781 tggtggatcg attctgtttc tgtgaatttt aattgcttca gttaatctat ctataacaaa
      841 accagcattt cctccaactc cagttccatt tgtctcacct cttaaaacaa tatatcttgt
      901 ttgaggtgtc attttagaac ttcctaaatg aaagcgttga gctagatcaa tgagcggcat
      961 aacattacca cgcatattaa aaacccctag aacataatca ggtacactag gaactctagt
     1021 atattctata ggtttgatga tttcttgtat attaagaatt ggaatcgcat attcctcatc
     1081 tccaactaca aagccaacaa gttggatgat atcatcttct ctttgatcga catcaggacc
     1141 agccatctga gtttgctgtt tttgcaaaat ttgctctaat ttttcattac tcatattctt
     1201 atcctagttt caaatttttt ctaaccacat tttccaagta ttctggagaa taaggtttag
     1261 tgatatattc agtcataccc acttcaacac ctcttaaacg gtcagtttta cttgttcttg
     1321 aagtaactgc tatcaatggt aagttgcgat atttagaata ctttctaatt tcaccagcta
     1381 aggtgtatcc atccattctt ggcatttcga tatctataag cattgcatca atatcatgtt
     1441 cgccagattt tataatattc aatgcttcaa caccatttgt tgcttcgatt aaactaactc
     1501 ctagcggttc taaagctttt tgcattaaag ttctatccat tttagaatca tctacaatta
     1561 agactttata atcacttggt tgttctttag gttttttcgc acttgattct aattgcgctt
     1621 taatatcaac tttaatttct ttggccatat ccatcatagc gcctacatca atgattaatg
     1681 tcaccctacc atcaccacgg attgtagctc ctgctatacc ttggatattt tgtaaataat
     1741 cacccatgga tttaataact atttcttctt gtcctacaag agtatctact ataataccaa
     1801 gcttgctttc tgctacccct ataacaacga cataagtttg atcaccgctt tcaaggactt
     1861 gtttaactcc aaatacatct gaaagtctca caagagaaag cacttcatct cttaagcgta
     1921 atacattttt accttcgata gtatagatat catcaattgg cactctaact gtttcaagaa
     1981 cgcttgcaag tggaattgca tagaattcct cttgagttcc tacaagtaaa gattgaatga
     2041 ttgccaaggt aagaggaatt ttaagtttaa atgaacttcc tttacctaac tcactatcaa
     2101 tttcaattac cccattaagt ttttcgatgt tggttttaac aacatccatt cctacgccac
     2161 gacctgaaac atttgttact ttagccgcag ttgaaaaacc aggcttgaaa atcaaagcaa
     2221 aagcttcttt gtctgtcatt tgatctgctt ctctttcggt aatcaaattt ttctctatag
     2281 cttttgcttt taagccattt ggatcaagtc ctttaccgtc atctgtaatt tctacaacga
     2341 tgtgattgcc ttcattataa gctttaagtt gtactatacc tttttcaggt tttccattcg
     2401 ctgcacgagt tgctggatcc tcaacaccat gatcacatga atttctaatc atatgcatga
     2461 taggatcgcc aatttcctct acgatagatt tatcaagttc agtttcttca cctgtaattt
     2521 caagttctat ttgctttcct aattcacgac ttaaatcacg aacaactctt gggaatttat
     2581 tgaaaacttt tgctataggt tgcattcttg ttttcatcac agcaagctga acatcagttg
     2641 taataatact taattgactt acaacctgat taagttcttc aaggaatttt tctccttcat
     2701 aacgctcttc aacatcatcg taaattttaa gcaaacggtt tttgcctaaa acaagctccc
     2761 caattagatt cattaagtga tctaatcttt ttacctccac gcgtatggtt tgatccatac
     2821 tgctagcatt actacctgaa gcaggaactt ttttctctcc actttccgta ggtttatttg
     2881 ctgtattgtt agtcggttta ggtgccgcat ttgttgtttg tttcttttgt gcgcgacgag
     2941 cttgatcttc agcttttcta acttttaaaa gtctttctat ttcagcttca acttcagaat
     3001 cacttaattg attaacatct acttcaggtt ctggagtagc tatttcttgt tttggtgctt
     3061 ctagttctgc ttgtggagta gatttttcat ttgaatctgt tgccacaaca ggagactctc
     3121 cctctgaaat agctgttaat cttgcgcaaa ttggttctat atccatacca atagcagtat
     3181 cgttgccatt atcacgaatg gaattaagta aagttttcat tctatcaata gactctaaaa
     3241 ccacatccat gatatctgga gttattttta actcgccatg tcttgctttg tttaaaacat
     3301 cctccatgtg gtgagttaac tttgttaaaa catcaaaatt taagaagctt gatgatcctt
     3361 taaccgtatg tgcaacacgg aaaattctat ttaataattc taaatcttct ggatttgatt
     3421 caagctctac taaatcatgg tcgatttgct caacaagctc aaaagcttca accaaaaagt
     3481 cttcaagtat ttcttgcata tcttccatat tttacccctg ttcttgagat tgatgttttt
     3541 taataacctt tgcaatttca ttgaagaaat cgctagcgtt aaatttgaca agatagcctt
     3601 ctccaccagc ttcttgaaca cctttctcat tcataaattc atttgataaa gatgagttaa
     3661 agactatagg aatatcttta aatcttggat cttctttaat gcgtgcagca aagtggaaac
     3721 catccatttg tggcatttcg acatcgctta ctataatttt taaagtatcg tttaaacttt
     3781 caccataaat ttggcttaat tcttctaatt tgtttatgcc ctctacgccg tccttagctt
     3841 caacaacttg aaagcccatc tgttgcatca tttctttgac gcgttttcta gcagtcatgc
     3901 tgtcatcaag tataagtgct gttccagtaa atttttctat ttttccaaaa tctatatctg
     3961 tttttggagc gtaaattcct aaatcttcaa caacactttc aagatctaaa attagcaaca
     4021 cttcatcatt ttcaatgcgt gttacacctg taattttacc tttatctaaa gcacctgatc
     4081 ctgtagaaaa agttgctggt tctatatctt tccagtttat tctacgaatt ctttttgctt
     4141 cgtgaactat aaaaccaata agaatattgc taaattcagt aataataact ctaggtttta
     4201 gcatagtgct ttctggctca gtgatttgca tccatttggc aagattgact acaggtataa
     4261 ccactccacg aagatcaaag ataccttcga tgtaatcagg tacacctgga agttctgtaa
     4321 ggcttgggat ttttataatc tcccttacct tagaaacatt tacaccataa attccttcat
     4381 agactttatc gtgcccttgc ttaaagatac ggaaatcgac aagctccatt tcatttgaac
     4441 ccgttttcac gatattttca tcaaacattt tgacccctca atttctgttc tcgaaatttg
     4501 atttcttgct gatattctac tacaaaaaaa cttctctcat atgcaaaact agctaagtta
     4561 agatatttaa tgttttcttt gttgatttga tgattttgat gat
//
LOCUS       DARBBO010000110         4545 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.110, whole genome shotgun sequence.
ACCESSION   DARBBO010000110 DARBBO010000000
VERSION     DARBBO010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4545
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.110"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(21..788)
                     /gene="fliR"
                     /locus_tag="SB854_001558"
     CDS             complement(21..788)
                     /gene="fliR"
                     /locus_tag="SB854_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HEG0957531.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMMAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITAQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(775..1410)
                     /locus_tag="SB854_001559"
     CDS             complement(775..1410)
                     /locus_tag="SB854_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0957532.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSSLYQIDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKIYTINVNGIC"
     gene            complement(1423..2496)
                     /locus_tag="SB854_001560"
     CDS             complement(1423..2496)
                     /locus_tag="SB854_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEG0957533.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSTEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKMNSFIADNSQLDSKLTLMGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(2496..3287)
                     /gene="rpsB"
                     /locus_tag="SB854_001561"
     CDS             complement(2496..3287)
                     /gene="rpsB"
                     /locus_tag="SB854_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEG0957534.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(3403..4539)
                     /locus_tag="SB854_001562"
     CDS             complement(3403..4539)
                     /locus_tag="SB854_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006017955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG0957535.1"
                     /translation="MLSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKEKIPFLKLFS
                     DTSLVFARHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQKQESKNIKS
                     HYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLKEGEKLLDIG
                     CGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQNYQDLEFEN
                     YFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKTNAWIDKYIF
                     PGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNKVLDKVREKYDEEF
                     IRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
BASE COUNT         1521 a          878 c          535 g         1611 t
ORIGIN      
        1 taatttcatt tatcctttcc ttaggagaaa aaaagagttt gcatatgagt aaaaagttct
       61 aaaattaaat ttttaaaata ttgcatcata actagtaaaa tagcaattaa aactacaaaa
      121 cctagagcta tctttatagg atagccaata actaaaagat taaattgtgg cattgttttc
      181 atcaaaagtc caaaaataac atcggctaaa agtgaaattc caagtatagg aaagctcata
      241 gtaaaaccta tgatgaaaat attaaacata cccatattta aataatgcat taaattctca
      301 tgcggataaa atccacctaa actaatataa cccaaagaat gacttaaaaa caaaagcatt
      361 aaatgatggc catcaaaagc aagaaaaaac atcaaagcaa gtaaatttaa aatttgtgcc
      421 gtaataggca tactcgttcc agaacttgga tctaatatac ttgccatagt aaatcccata
      481 gtaaaagcaa tctgctcacc tgccatcata ataatagcaa aaataatttg aagcattaat
      541 cctgccatca ttccaaaaat cacttcacta ataagctgta aaacaaaaaa actatctaaa
      601 tgcaaagatt ctaatctagc caaaggatat aaatacatag tcaaaaataa aactatagta
      661 ctttttatta ccataggaat agaattatgt gaaaaaaaag gaaaaaaaac tataagacca
      721 ctcattctag caagaagcaa cataaaagtt acaacatttt tatcgcctaa ataattaaca
      781 aattccatta acgtttatag tataaatttt atcacaaaaa cttgcgagct tactatcgtg
      841 agttacaaaa aataaagccg catcattttc tttaacataa gaaattaaaa gttcgataac
      901 atttttagca ttatcaaaat ccaaatttcc agttgcttca tcagcaaaaa taatctttgg
      961 ttttttacaa agcacacgtg cgatactcac acgctgttgt tgtccgccgc taagctttcc
     1021 tattttttga tgtaaaagcg tatcaatacc taaccttttt aaaattttct catctaaatc
     1081 ttgacccgat aaaacactag caagttcgat attttctaaa gccgaaaaac ctttaaaaag
     1141 ataatgtgtc tgaaaaataa taccaaaatc ataacggcga atttttaatc tttcgttttc
     1201 atctatctga taaagactag aacctttaaa aaaaacttca cctttttttg gaatcaataa
     1261 agaagaaagt atatgcaaaa gagtagattt accacaaccg ctactccctt gaatagcaat
     1321 gcaatctttg gtatttaaag taagatttaa accctcaaaa agcggataat caaaactatg
     1381 gcttaaattt tccgctctta agagttccat ttttaaccgt ttttaaagtt gtgcagcaac
     1441 ttcagccgca aaatcttcag ttttcttttc taaaccttcg ccaacttcaa agcaaataaa
     1501 ttcaacaatt ttaatttttc cgccaaattc tttttctttt tcagcaatta cttgttctac
     1561 agttttttta tcatccatta cataaaactg acccattaaa gtaagtttgc tatcgagttg
     1621 agaattatcg gctataaagc tattcatttt acctggaatg atattatccc aaattttttc
     1681 aggtttacct tgagctttaa gttcttcttt gattttttct tcagcttctt ttaaaattgc
     1741 atcgcttaat tgtttgcgac ttgcaaattg aggaatttta tgttcaggtt tatttggatc
     1801 tttcagtctg cgtctttctt cattttcttt ttcaagttca gcaaccaaag ctttgtattc
     1861 attttcaaca aaagtcatat ccaaatcttc ataacttaaa taacttggtc tcattgctgc
     1921 aatatgcata caaatttgtc ttaacaaatc tcttgatttt gaagccactt cagtgctatc
     1981 acaagctgca gcgatcacaa cgcccacacg gccatttgta tggatataac catttacaac
     2041 gccgttagca cctgctttta aagttgcaaa tcttcttaca actaggtttt ctcctatagt
     2101 tgcaatttga ctttttaaat attcttcaaa ttttacacca ttaatcgtac ttgagtgaag
     2161 ctcttccaca ctttgcaagc tattgctttg aatatgagct gtagtatctt ttgttaaagc
     2221 gataaactga tcattttttg ccacaaaatc tgtttcggaa ttaatctcac ttacagttgc
     2281 gcttgtaaaa tcatcactta cttttacact tactaaacct tctgcagcaa gtctatctgc
     2341 ttttttagca gccttaccta aacctttttc tcttaaaagt tgtactgctt tatcaaaatc
     2401 tccattagtt tcactcaaag catttttaca atccatcatc cccgcgcctg tactttcgcg
     2461 gagttctttt accattgcag cagtaatttc agccattatt cttgctcctc accgaagtct
     2521 tcttcgctca tcgcttcatc taaaacttct tttttctctt catcggtgat ttctttttct
     2581 tcatttgcta aagcttcgcc atcttgttct cttaaagctt ttccttcatt aatcgcttca
     2641 gccatttctt ggcagaaaag ttgcactgaa cgaattgcat catcatttcc tggaatagga
     2701 taagttacca agtcaggatc gcagtttgta tctagtggag ctacaacagg aattcttaat
     2761 ctatttgctt cttgaacagc aattttttct tttactgtgt caataacaaa aatcatatca
     2821 ggttgagttt tcatataacg aattccacct aaataagcta ataatttttc tttttttctt
     2881 gtaagcatta aagcttcttt tttagttaaa agtttaatac ttccatcttc ttccattttt
     2941 tcaattactt ctaattttct aattgattgg cgaatggtac caaaatttgt catcataccg
     3001 ccaagccatc tatgatttac ataaggcata ccgcattttt cagcgtattc tttaatcgct
     3061 ccacctgctt gtttttttgt cccgacaaaa agtatagttt ttccttcggc agcagcgtca
     3121 cgaacgatat tataggtata tctaaaatat cttaaagttt tttgtaaatc aattacataa
     3181 ataccttttc tctcgccaaa aatgaatttt ttcatctttg gattccagcg tcttgtttgg
     3241 tgtccaaaat gcacaccgca ttctaataaa tctctcatac taaccatgag tttctccttg
     3301 taaatttagc tttattcctc cacatccctt aatttacaca agctaaaaag gattgatgcg
     3361 tgtgaaatga agctaatatt ttatcaaatt taagtttagt ttttacttat atatgtagtc
     3421 cttggtaagg cttagattat tattgatttc ttttgtgatt aaaaattgaa acaaatccac
     3481 gcttccaacg cgaaaagcag aggcacaaga acgaaggtat aaatcccaca ttcttataaa
     3541 ttcttcatca tatttttccc ttaccttgtc caatactttg ttaaaatttt catcccataa
     3601 atctaaagtt tttgcatagt gcattcttaa actttctgct aaaagaagat gaaaatccca
     3661 ctcactcata gcacttacaa cctctcttaa agaaggtaaa tatcctcctg gaaaaatata
     3721 tttatctatc caagcatttg tttttccttc aaacatggct aaaatagaat gtaaaagcat
     3781 agaacctcca ggttttaaca cttgttttac tttcatgaaa taaagtccta aattctcttt
     3841 gcctacatgt tcaaacatac ccacagaaac aactttatca aaataatttt caaattctaa
     3901 atcttgataa ttttgaagtc ttatttctat tttatcttca agaccaagtt cttttactct
     3961 ttccttagct tttttacact gctcctctga aatagtaatt ccaacaacct taactccata
     4021 cttttgagcc gccataatag aaagccaacc ccagccacaa cctatatcta aaagcttttc
     4081 tccttctttt aaatcaagtt ttttaagagt atgttctatt ttgttaattt gagcttcata
     4141 aagagtatta ttaggctctt taaaataagc gcaagaatag ctcatagtat catcaagcca
     4201 aagcttataa aaatcattac ctatatcata atgacttttg atatttttac tttcctgttt
     4261 ttgggctatt ttactcaaga tatcctctgt attttttaaa aaacgcttat ttgaaaaata
     4321 atacaaaact ttagctattt catcataatc accttctatt tctagtttag actccatata
     4381 atgtcttgca aaaactaaac tcgtatcact aaataatttt aaaaaaggta ttttttcttt
     4441 gaaaattaaa gaaaatttag caggctgatt acccacatga aattcttctt gatcccaaaa
     4501 tacaattcta aaatttccat aattccattt tgaaagaata aattt
//
LOCUS       DARBBO010000111         4489 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.111, whole genome shotgun sequence.
ACCESSION   DARBBO010000111 DARBBO010000000
VERSION     DARBBO010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4489
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.111"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            80..3034
                     /gene="cas9"
                     /locus_tag="SB854_001563"
     CDS             80..3034
                     /gene="cas9"
                     /locus_tag="SB854_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344900.1"
                     /note="Cas9, originally named Csn1, is the large,
                     multifunctional signature protein of type II CRISPR/Cas
                     systems. It is well known even to general audiences
                     because its RNA-guided endonuclease activity has made it a
                     popular tool for custom editing of eukaryotic genomes;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR RNA-guided endonuclease Cas9"
                     /protein_id="HEG0957536.1"
                     /translation="MARILAFDIGISSIGWAFSENDELKDCGVRIFTKVENPKTGESL
                     ALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPY
                     ELRFRALNELLSKQDFARVILHIAKRRGYDDIKNSDDKEKGAILKAIKQNEEKLANYQ
                     SVGEYLYKEYFQKFKENSKEFTNVRNKKESYERCIAQSFLKDELKLIFKKQREFGFSF
                     SKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVTLTRIINLLN
                     NLKNTEGILYTKDDLNALLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKK
                     YKEFIKALGEHNLSQDDLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKD
                     HLNISFKALKLITPLMLEGKKYDEACNELNLKVAINEDKKDFLPAFNETYYKDEVTNP
                     VVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDA
                     ELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRS
                     FDDSYMNKVLVFTKQNQEKLNKTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNY
                     KDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAK
                     SGMLTSALRHTWGFSTKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELY
                     AKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEF
                     YQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFAL
                     KVLPNKAVARSKKGEIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPEFVYYNAFTS
                     STVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVT
                     KAEFRQREDFKK"
     gene            3031..3921
                     /gene="cas1"
                     /locus_tag="SB854_001564"
     CDS             3031..3921
                     /gene="cas1"
                     /locus_tag="SB854_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II CRISPR-associated endonuclease Cas1"
                     /protein_id="HEG0957537.1"
                     /translation="MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINII
                     VLESLQISISSALFNAFAKYKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSA
                     QKKAILWQKIIKNKILNQAFILKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYF
                     KTLFGTSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALC
                     DDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYV
                     ANFKNALLYEDELKIVKFDD"
     gene            3914..4345
                     /gene="cas2"
                     /locus_tag="SB854_001565"
     CDS             3914..4345
                     /gene="cas2"
                     /locus_tag="SB854_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014667005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CRISPR-associated endonuclease Cas2"
                     /protein_id="HEG0957538.1"
                     /translation="MIEDKFMRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFS
                     VYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNE
                     TNLTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF"
BASE COUNT         1815 a          535 c          762 g         1377 t
ORIGIN      
        1 gaaaagttta tgtttgttta aaaaaatgat ttttgtatta taattataca caaatcataa
       61 atattaaaaa ggatctagtg tggcaagaat tttggcattt gatataggaa taagctctat
      121 tggctgggca tttagtgaaa atgatgagtt aaaagattgt ggagttagga tttttacaaa
      181 ggttgaaaat cccaaaacag gagaatcctt agccttgcca agacgccttg caagaagtgc
      241 tagaaaacgc cttgctagac gcaaagcaag gctaaatcac ttaaaacatt taatcgcaaa
      301 tgaatttaag ttaaattacg aagattatca aagctttgat gaaagtttag ccaaggctta
      361 taaaggatct ttaattagcc cttatgagtt aagatttaga gctttaaacg agcttttaag
      421 taagcaagat tttgcaagag tgattttaca tattgcaaaa aggcgtggct atgatgatat
      481 taaaaatagt gatgataaag aaaaaggtgc gattttaaaa gctatcaagc aaaatgaaga
      541 aaaactagca aattatcaaa gtgtgggcga gtatctttat aaagagtatt ttcaaaaatt
      601 caaagaaaat tccaaagaat ttacaaatgt tagaaataaa aaagaaagtt atgaacgctg
      661 catagcgcaa agttttttaa aagatgaatt aaagcttatt tttaaaaaac aaagagaatt
      721 tggcttttct ttttcaaaaa aatttgaaga agaggtgctt agtgtagcat tttataaaag
      781 ggctttaaaa gatttttctc atttggtggg aaattgtagt ttttttaccg atgaaaaaag
      841 agcgccaaaa aattcgccct tagcttttat gtttgtaaca cttacaagaa ttatcaatct
      901 tttaaacaat cttaaaaata ctgaaggaat tttatataca aaagatgatt taaacgccct
      961 tttaaatgaa gttttaaaaa acggcactct aacttataaa caaacaaaaa agcttttggg
     1021 cttaagcgat gattatgaat ttaaaggaga aaaaggaact tattttattg agtttaaaaa
     1081 atacaaagaa tttataaaag ccctaggtga gcataattta agccaagatg atttaaatga
     1141 aatagcaaaa gatattaccc ttataaaaga tgagattaaa cttaaaaagg ctttagcaaa
     1201 atatgattta aatcaaaatc aaattgatag tttaagcaaa ttggaattta aagaccattt
     1261 aaatataagt tttaaagcct taaaacttat cactccttta atgcttgaag gtaaaaaata
     1321 cgatgaagct tgcaatgagc ttaatttaaa agtagcaatc aatgaagata aaaaagactt
     1381 tttacccgca tttaatgaaa cttattacaa agatgaagta actaatcctg tggttttaag
     1441 ggcgattaaa gaatatagaa aggtcttaaa tgccttactt aaaaaatacg gtaaagtgca
     1501 taaaataaac attgaattag caagagaagt aggtaaaaat cacagccaaa gagctaaaat
     1561 agaaaaagag caaaacgaaa actacaaggc caaaaaagac gccgaacttg aatgtgaaaa
     1621 actaggctta aaaataaata gcaaaaatat tttaaaatta agattattta aagaacaaaa
     1681 agaattttgt gcttatagtg gagaaaagat taaaattagt gatttgcaag atgaaaaaat
     1741 gcttgaaatt gatcacattt acccttattc tagaagtttt gatgattctt atatgaataa
     1801 agttttagtt tttaccaagc aaaatcaaga aaaacttaat aaaaccccct ttgaagcctt
     1861 tggcaatgat agtgcaaaat ggcagaaaat tgaagtttta gcaaaaaatt tacctactaa
     1921 aaagcaaaaa agaattttag ataaaaatta caaagacaaa gagcaaaaag actttaaaga
     1981 tagaaatcta aacgatactc gctacatcgc aaggcttgtt ttaaactaca ctaaagatta
     2041 tttagatttt ttacctttaa gcgatgatga aaatacaaag ttaaacgaca cacaaaaagg
     2101 ctcaaaagtg catgtagaag caaaaagcgg tatgcttaca tcggctttaa gacacacttg
     2161 gggctttagc actaaggata gaaataacca tcttcatcac gccatcgatg cagtaattat
     2221 tgcttatgca aacaactcta tcgtaaaggc tttttcagat tttaaaaaag agcaagaaag
     2281 caacagtgca gaactttatg caaaaaaaat tagtgaatta gattataaaa acaaaaggaa
     2341 gttttttgag ccttttagtg gttttaggca aaaggtttta gataaaattg atgaaatttt
     2401 tgtctcaaaa cctgagagaa aaaagccaag tggagcttta catgaagaaa catttagaaa
     2461 agaagaagaa ttctatcaat catacggcgg aaaagaagga gttttaaaag ccctagagct
     2521 tggtaaaatc cgcaaagtaa atggtaaaat agttaaaaat ggcgatatgt ttagagtgga
     2581 tatttttaaa cacaaaaaga caaataaatt ttatgctgtg ccaatttata ctatggattt
     2641 tgctttaaaa gtattaccaa ataaagctgt agcacgaagt aaaaaaggtg agataaaaga
     2701 ctggatttta atggatgaaa attatgagtt ttgcttttct ttatacaaag atagtttgat
     2761 tttaattcaa actaaagata tgcaagagcc agaatttgtt tattataatg cttttacaag
     2821 ctctactgtt agtttgattg tttcaaaaca cgataataaa tttgaaacgc taagcaaaaa
     2881 tcaaaaaata ttgtttaaaa atgcaaatga aaaagaagta atcgcaaaaa gcataggaat
     2941 tcaaaatcta aaagtatttg aaaaatacat agtttcagca cttggggaag ttacaaaggc
     3001 tgagtttaga caaagagaag attttaaaaa atgagttacg atgaagcttt taaaacactg
     3061 cttattagct ctaatgccaa gctaaattta gagctaaatc atcttgtgat taagcaagat
     3121 gaaaatatag ccaaattgtt tttaaaagat ataaatatca tcgttttaga aagcttacaa
     3181 ataagcatta gttccgcact ttttaatgcc tttgcaaagt ataaaattat cttattaacc
     3241 tgcgatgaaa ctcatagtat aaatggcgtt tttactcctt ttttagggca ttttcaaagt
     3301 gcaaaaatcg caaaagagca aatgaatgta agtgctcaaa aaaaggctat tttatggcaa
     3361 aaaatcatta aaaataaaat cctaaatcaa gcctttatct taaaaaaaca caataaaata
     3421 gagcaaagca atgagcttat aaatttggct aaaaaagtaa gcttaaatga tagtaaaaat
     3481 attgaagctg ttgcggcggc gctttatttt aaaactttgt ttggtacttc tttttcaaga
     3541 gatgagcttt gctttgaaaa ttctgcttta aattatggct atgcaatcat tagggcttgt
     3601 attattagag cagtttgcat aagtgggctt ttgccttggc ttggcataaa gcacgataat
     3661 atttataatt cttttgcgct ttgcgatgat ttgatagaag tgtttagggc tagtgttgat
     3721 gattgtgttt taaagcttaa gggtgaaagt gagtttttaa gcaaagatga caaaagagcg
     3781 ttgattggca atttacaaag taaaatcaat tttgatgggc aaaattatcc tttaaacaga
     3841 gcgataaatc attatgtggc aaattttaaa aatgctttat tgtatgaaga tgaactaaag
     3901 atagtgaaat ttgatgattg aagataaatt tatgcgtgtg cttttgatgt ttgatgtgcc
     3961 aactaaaagt aaaaaagagc aaaaactagc aagtaaattt agaaataatc ttataaaatt
     4021 aggttatttt atgctgcaat ttagtgttta tatgcgtatt tgcaagggtt taagttctgc
     4081 aaaaagttct attgaaaatg taaaaaagat tttgccacct tatggaaatg taagggcttt
     4141 aatcatcact gaaaagcaat ttgataaaat ggagcttttg cttggtggca tagtttttaa
     4201 cgaaaaagtt aataacgaaa ccaatttaac gctttttgat atagatagtc atggagaatt
     4261 taaatataaa aattcaaata atgaagaaat tcaaataaac aaaaaacaag aaaaatatca
     4321 tcagcaaaat ttatttgaat tttaaaagcg gttttagggg attgtaaccc cgcagagtcc
     4381 cgcaaactct ttattttagt ccctttttaa atttcttatg agattatagc ataatttttg
     4441 ctatttttca tgaaaaaacc ccgaaatttt cattatctgg taaatatct
//
LOCUS       DARBBO010000112         4444 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.112, whole genome shotgun sequence.
ACCESSION   DARBBO010000112 DARBBO010000000
VERSION     DARBBO010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4444
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.112"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..888
                     /locus_tag="SB854_001566"
     CDS             <1..888
                     /locus_tag="SB854_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEG0957539.1"
                     /translation="RGLEQDNQAVKESVQTVSVVEGGNLTARITANPRNPQLIELKNV
                     LNKLLDVLQARVGSDMNAIHKIFEEYKSLDFRNKLENASGSVELTTNALGDEIVKMLK
                     QSSDFANALANESGKLQTAVQSLTTSSNSQAQSLEETAAALEEITSSMQNVSVKTSDV
                     ITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQK
                     SLSEIEANTNLLVQSINDMAESIKEQTAGITQINDSVAQIDQTTKDNVEIANESAIIS
                     STVSDIANNILEDVKKKRF"
     gene            1023..2804
                     /locus_tag="SB854_001567"
     CDS             1023..2804
                     /locus_tag="SB854_001567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HEG0957540.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAAMLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDDNDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSLDENLEFNDSLKRYGFNKTSLYGWEKFDERFDLAKNMDEANRFGWIVEINPFDAQ
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKI
                     LDEGILYVGQFNGNVGDFKGQGKWIALEYGKNSLNEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYESMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
     gene            complement(2842..3780)
                     /gene="trxB"
                     /locus_tag="SB854_001568"
     CDS             complement(2842..3780)
                     /gene="trxB"
                     /locus_tag="SB854_001568"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEG0957541.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVAGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(3914..4228)
                     /gene="trxA"
                     /locus_tag="SB854_001569"
     CDS             complement(3914..4228)
                     /gene="trxA"
                     /locus_tag="SB854_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEG0957542.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            complement(4285..>4444)
                     /locus_tag="SB854_001570"
     CDS             complement(4285..>4444)
                     /locus_tag="SB854_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957543.1"
                     /translation="YEVSERLDRKKLEKILKTIEFYHLKNGISSDFQIDLICIKNDVI
                     QFCENISF"
BASE COUNT         1586 a          686 c          724 g         1448 t
ORIGIN      
        1 agaggcttag aacaagacaa tcaagccgtt aaagaatcag ttcaaaccgt atcagttgta
       61 gaaggtggta atttaacagc aagaattact gctaatccaa gaaacccaca attaatagaa
      121 ttaaaaaatg ttctaaataa acttcttgat gttttacaag ctagagtagg ttctgatatg
      181 aatgctattc ataaaatttt tgaagaatac aaaagcttag actttagaaa taaattagaa
      241 aatgctagcg gtagtgtaga attaactact aatgctttag gtgatgaaat agttaaaatg
      301 ctaaaacaaa gttcagactt tgctaatgct ttagctaatg aaagtggaaa attacaaact
      361 gctgttcaaa gcttaaccac ttcttcaaat tctcaagctc aatctttaga agaaactgca
      421 gcagctttag aagagattac ttcttctatg caaaatgttt cagttaaaac tagtgatgtt
      481 atcactcaat ctgaagagat taaaaatgtt acaggtatta taggtgatat tgcagatcaa
      541 atcaatcttt tagctttaaa tgcagctatt gaagcagcac gtgctggaga acatggtaga
      601 ggctttgcag tggtagctga tgaagttaga aaactagctg aaagaactca aaagtcttta
      661 tctgaaattg aagctaatac taatttactt gttcaatcta tcaatgatat ggcagaaagt
      721 attaaagaac aaactgcagg tatcactcaa atcaatgata gcgtagctca aattgatcaa
      781 actactaaag ataatgttga aattgctaat gaatcagcta ttatttctag tacagtaagt
      841 gatatagcta ataatatctt agaagatgtt aagaagaaga ggttttaatt agtcatttat
      901 acctagtgaa aaactaggta taaatttttt cttcaattta aatttttcat caaagtttct
      961 aaaaagtttc caaatatttt tatacttcca ttgttttaaa tttcaatatg gggtaaaaac
     1021 aaatggaaag aagattgttt ttaaaaggtt cagctttagg ttctatggtg gctttttttg
     1081 caagttcaaa tttaagtgct gctatgctta aggataagga tttgctaggt tttaaagctg
     1141 ttagtgcaag cacacaagat aaagttatag taccacaagg ttatgaagca aaggttttaa
     1201 tttcttgggg tgatccactt tttagtaaag caaaacctta tgatgaaaat aaaatcatcg
     1261 acatgaatgc agttaaaaat gctcatttgg tttttggaga tgacaatgat ggtatgagtt
     1321 tttttccact ttcaaaaaac agaggaattt tagccgttaa taatgaatat ataaatcctg
     1381 aaatcatgtt taatcatcat ggtaaaaatt taagcaaaga agatatttta tatgagcaag
     1441 ccagtgtggg tgtgagtatc ttagaaatcg aaaaaaaagg tgatgattgg actgtggttt
     1501 tagactctaa gtataaccgc agaatcgatg caaacactaa aatgcaagta agtggagcag
     1561 ctaaaaaaga agttttaaaa aatgaaaaat ttgttcatgg aacttttgca aattgtgcaa
     1621 atggacaaac accttgggga acttatatca cctgtgaaga aaattttgat gatttttttg
     1681 gaagtttaga tgaaaatcta gaatttaatg actctcttaa acgctatgga tttaacaaaa
     1741 ctagtcttta tggatgggaa aaatttgatg aaagatttga tttagctaaa aatatggatg
     1801 aagccaatcg ttttggttgg atagtggaaa tcaatccttt tgatgcacaa agcacacctg
     1861 ttaaaagaac ttctttaggg cgttttaaac atgaaaatgc agaaattatc gtagaaaaag
     1921 atggttctgt tatagtttat atgggtgatg atgagatgaa tgaatttatt tataaatttg
     1981 ttagcaaaca taaatacaaa aaaggtgctg atacaagtaa aattttagat gaaggtattt
     2041 tgtatgtagg acagtttaac ggcaatgtgg gagattttaa aggacaggga aaatggatag
     2101 ctttagaata tggcaaaaac agcttaaatg aaaaaaatgg ttttaagtct caagctcaag
     2161 tactcatcaa tacgcgtctt gctgcaagta ttgtaggtgc aactcctatg gatagatgtg
     2221 aatggatagc aagccataaa caaagtggtt ctaaagaagt atttgcaaca ctaacgaaca
     2281 acaaaaatcg ccaagaacct aatgcagcaa atccaaggac taaaaatgtt tatggacaaa
     2341 ttttaaaatg gatgccaaaa aattctcata aagacgatga ttttacttgg gaaatttttg
     2401 ctcttgctgg aaatcctgat aaccaacaag gcttatataa aggctcaaat aatattacaa
     2461 gtgaaaataa atttaattct cctgatggac ttaaatttga tagagatgga agactttgga
     2521 tacaaacaga tggatcttat tctaataaag atgaatacga aagtatggga aataactgca
     2581 tgctagcagc aaatccaaaa acaggggaaa ttagacgctt tttaacaggg cctattgctt
     2641 gtgaattaac agggattgct tttagtgagg attatactac aatgtttgta ggcatacaac
     2701 atccaggaga aggtttgaaa ggtagtactt ttccttatgg aaaaacacca agatcaagtg
     2761 taatgatgat aagaaaactt gatggtggag tgataggaag ctaaataaaa ataaagttgc
     2821 ttttagcaac tttataaaat cttaatgcaa gctttctata taagccatag cacttaatgc
     2881 agctacagct ccatcacctg cagcacaaat aacttgctta ggcgcatctt ttctaaggtc
     2941 ccctgcggca aaaagtccag caacgctagt ttgcatttta agatcaacac ttacttgccc
     3001 accttcttcc atattgcata aaaacttact atcgtcttgt tttaaaattt catttcttac
     3061 gttaagacca acaaaagtaa aaattcctgg aacatttaaa tctctaatac taccatcttt
     3121 taattttact tttactccag caacacccat tttatcgcca tatacttcat ctacacttgc
     3181 gctagtaatg agttctattt tttcgttttt cttaactttt tctactgtag atggagctgc
     3241 tctaaactca tctctgcggt ggataagata aatcttagaa caaatatttg ctagatataa
     3301 agcttcttct aaagccgtat ctccaccacc taaaactgca acttctttat ttttataaaa
     3361 aaatccatca caagttgcac aagtgcttac accttttcca aaaaattcat cttcgccctt
     3421 aaaacctgct ttttttggag ctgagcctgt acaaactatc acagctttag caagttctgt
     3481 tttaccacct tctaatttga tggtaaaact tccatcacta ttttttaaaa tttgttctac
     3541 tccaaccatt tcatgtttta aaccaaaacg catacattgt tcactccaag gagccataaa
     3601 agaaattcca tccataactt gggctacacc tggataattt tctatctcag aacttgaggt
     3661 aatttgtcca ccaggcatac ctttttcaaa cattactaca tttttaaggc cacctctagt
     3721 tgcataaagt ccggcactaa gtccagcagg acctccacct atgattgcta catctaacat
     3781 ttatatttcc tttatattga attttattat taataatgat ataaaaatta ttcttaatag
     3841 tagttaataa aaattattat ttagtataaa tttgaaattt ttaagaagaa ggctagttat
     3901 actagccttt agtttatagt aaagagttta atttatcgct aattgcttgt ttagattgtg
     3961 caccaacgag ttgatctaca acttcaccat ttttaaagaa aataagcgta ggaatagagc
     4021 gaacaccaaa ttcagctgct aaatcacctt gttcatctgt atttactttg caaattttag
     4081 ctttaccatc aaagtcattt gcaagttcat caataactgg agcaagcatt ctacaaggtc
     4141 cgcaccatgg agcccaaaaa tcaactaaag ctacaccttc ttttgcttga gcaaaattat
     4201 cacttgttaa ttcaatatat tttcccataa tttttccttt ctttaatttt tgtctaattg
     4261 tattttattt ttttaaatat cagcttaaaa acttatattt tcgcaaaatt gtatcacatc
     4321 atttttaatg caaatcagat caatctgaaa atccgatgaa attccatttt taagatgata
     4381 aaattctata gtttttaaaa ttttttcaag tttttttcta tccaaacgct cggaaacttc
     4441 ataa
//
LOCUS       DARBBO010000113         4302 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.113, whole genome shotgun sequence.
ACCESSION   DARBBO010000113 DARBBO010000000
VERSION     DARBBO010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4302)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4302)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4302
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.113"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..309
                     /locus_tag="SB854_001571"
     CDS             <1..309
                     /locus_tag="SB854_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEG0957544.1"
                     /translation="STEDFIDSLKKISVVTEKMKLHFNKDKIIFEGISLDNMEAKTEL
                     EIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNEPNSAFIVKSQGLSMIIMPMIL
                     "
     gene            338..2647
                     /gene="gyrB"
                     /locus_tag="SB854_001572"
     CDS             338..2647
                     /gene="gyrB"
                     /locus_tag="SB854_001572"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEG0957545.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTEGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGQVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVTDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGDDVREGLIAIVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVTNGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKANNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEASYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(2673..3014)
                     /locus_tag="SB854_001573"
     CDS             complement(2673..3014)
                     /locus_tag="SB854_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HEG0957546.1"
                     /translation="MKKTILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASRKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAILLQNKTH"
     gene            complement(3017..4255)
                     /locus_tag="SB854_001574"
     CDS             complement(3017..4255)
                     /locus_tag="SB854_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HEG0957547.1"
                     /translation="MKQNDQKENRRDFLKNIGFGLFGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLNDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YVSNDYGVTWAKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNVYGV"
BASE COUNT         1496 a          657 c          715 g         1434 t
ORIGIN      
        1 tcaactgaag attttataga tagtcttaaa aaaatcagcg ttgtaactga aaaaatgaaa
       61 cttcatttta acaaagataa aatcatcttt gaaggtataa gtttagacaa tatggaagca
      121 aaaacagaac ttgaaattca aacaggagta agtgaagaat ttaatcttac tataaaaatc
      181 aaatatttac ttgatttttt aacttctata gaagaagaaa aattcacttt aagtgtaaat
      241 gaacctaatt cagcatttat agtcaaatcc caaggactat caatgattat catgcctatg
      301 attttgtaat aaaacaagta aaagataaag gaaaaatatg caagaaaatt acggtgcgag
      361 taatattaaa gtcctaaaag gcctagaagc tgttagaaaa cgcccaggta tgtatatagg
      421 agatacaaac ataggcggac ttcatcatat gatttatgaa gttgtggata attctatcga
      481 tgaagctatg gcaggacatt gtgatactat agatgtagaa atcactactg aaggaagctg
      541 tatagttagt gataatggtc gtggtattcc tgttgatatg cacccaactg aaaatatgcc
      601 aactttaact gttgttttaa ctgtcctaca tgcaggggga aaattcgata aagatactta
      661 taaagtttca ggcggtttgc atggtgttgg ggtttcggtt gtaaatgcac tttctaaaaa
      721 acttgtagct acagttgaaa gaaatggaga aatttatcgt caagaatttt cagaaggtca
      781 agttatcagt gaatttggtg tgataggaaa aagtaaaaaa acaggaacaa ctatagaatt
      841 ttggcctgat gatcaaattt ttgaagtgac tgaatttgat tatgaaattt tggctaaaag
      901 atttcgtgaa cttgcatact taaatccaaa aatcactata aattttaaag ataaccgcgt
      961 aggcaaacat gaaagttttc actttgaagg tggaatttct cagtttgtta cagacttaaa
     1021 taaaaaagaa gctttaacta aagcaatttt ctttagcgta gatgaagaag atgtgaatgt
     1081 tgaagtagct ttgctttaca atgatactta tagtgaaaat ttactctctt ttgtaaataa
     1141 tatcaaaact ccagatggtg gaacacacga agctggtttt agaatgggtt taactcgtgt
     1201 gataagtaac tatatagaag caaatgcaag tgctagagaa aaggataata aaatcacggg
     1261 tgatgatgtg cgtgaaggtt tgatcgctat tgtgagtgta aaggtgcctg aaccacaatt
     1321 tgaaggacaa accaaaggaa aacttggttc aacttatgtg cgtcctatag tttcaaaagc
     1381 aagttttgag tatttgacta aatattttga agaaaatcct atcgaagcta aagctataat
     1441 gaataaagct ttaatggcag ctagaggaag agaagcagcg aaaaaagcta gagaattaac
     1501 gcgcaaaaaa gaaagtttaa gcgtaggaac tttaccaggg aaattggctg attgtcaaag
     1561 taaagatcca agtgaaagtg aaatttatct tgtggaaggg gattctgcag gaggttctgc
     1621 aaaacaaggt agagaaagat ctttccaagc tatactgcct ttgcgtggta aaattttaaa
     1681 tgttgaaaaa gcaagattag ataaaatttt aaaatctgag caaattcaaa atatgattac
     1741 cgcttttggc tgtggtatag gtgaagattt tgatctttca aaacttagat atcataaaat
     1801 catcatcatg acagatgcgg atgttgatgg atcacatata caaaccttgc ttttaacttt
     1861 cttcttccgt tttatgaatg aacttgtgac aaatggacat atttatttag cacaaccacc
     1921 tttatatctt tataaaaaag ctaaaaagca aatttattta aaagatgaaa aagctttgag
     1981 cgaatacctg atagaaacag gaatagaagg tttaaactat gaaggtatag gaatgaatga
     2041 tttaaaagat tatttaaaaa tcgtcgcagc ttatcgtgcg attttaaaag atcttgaaaa
     2101 gcgttttaat gtgatttctg tgatacgcta tatgatagaa aattcaaatt tagttaaagc
     2161 aaataatgaa gaattattta gtgtaatcaa acaattttta gaaacacaag gacacaatat
     2221 cttaaatcat tatatcaatg aaaatgaaat tcgagctttc gttcaaactc aaaatggctt
     2281 agaagaactt gtgatcaatg aagaactttt cactcatcca ctatatgaag aagcaagtta
     2341 tatttttgat aagattaaag atagaggctt ggaatttgat aaagatattt tagaagttct
     2401 tgaagatgtt gaaaccaatg ctaaaaaagg tgctactata caacgctata aaggtttagg
     2461 ggaaatgaat cctgagcaac tttgggaaac cacaatggat ccaagcgtaa gaagactttt
     2521 aaaaatcact attgaagatg cacaaagtgc aaatgatacc tttaatctct ttatgggtga
     2581 tgaggttgaa ccaagacgcg attatatcca agcacacgct aaagatgtaa agcatttgga
     2641 tgtgtaaatt tatcattgaa gaaatgattt cttcaatgag ttttgttttg taagagtata
     2701 gctagaggaa ttcttcttct tgtatcgtat ttttctccat aatatttttc aagataattt
     2761 aaaatttttt cttcatcttc aggttctatt tcccaaagtc cttcactatc ttgcatccat
     2821 cttatagctg ctaaccaagc ttttctactt gcatgcatat tggtaatgag attggatcca
     2881 tgacaagcta aacaatttgc ttccactaaa ggtgaatcag gatcgataat caatcctgta
     2941 tcagggttaa tttcaagatt ttgagcccaa cttgcactta aaaacaatgc taagatcaat
     3001 atagtttttt tcatacttaa actccataaa cattaactct atggcatgca ttattgatat
     3061 atcctcctgg attccactgt gctaaaacca taggttgact gttaccttga ctatcgatag
     3121 ctcttgccca aatttcataa tatccttttg ttggtattga tatttgagca ctccattttt
     3181 gccatgctaa tctatttaat ggtttttcta cctttgcttt agcccatgtt accccataat
     3241 cattgcttac ataaacttca ctaacttcaa gttctccagc ccaagcttta cctctaactt
     3301 caaatttttt atttgctttt atttcagaac catttttgat attagtaatt acagatctta
     3361 taggcattga ttctatgatt ttcatctcgc ctttatagtt aaaatctcct ggttttaccg
     3421 gatttacagg aactttataa gaaccttcca ttttttcacc atcatgaatt ttatttctta
     3481 ctgaaatttt ataaagccat ttaccgcttg tacttgcagg gtaaccacca caaacaagtc
     3541 taagtggata gccattgact aaaggaatat ctttgccttc ataagcccaa gctattagag
     3601 tttcatcttg taaagcttta gaaataggaa ctcctctact aataggtgaa gtttcttcac
     3661 catttaattt tgtatctatg ccataatatc cgatataaac cgcatcattt ttgataccac
     3721 aatcttttaa aatatcgttt aaacgcactc ctgtccatct accgcaagct actgcaccat
     3781 aaccccattg agttcctttt gtgctaggta taacttcgga tctaccattt ccaccgcatt
     3841 caactgttaa ggcataagta taggttttaa atttcttttt taaatcttct atggtgtaag
     3901 attttttatt gataatgctt tctccatcga tttctaaagt ccaaccttta tgaagtcttt
     3961 cttttatcgt ttctaggctt ggtggtaagc cattatttct aacaaagaaa ttttcaggtt
     4021 tagtaaaatc agaatcaaga gcataaattt cagtttctgc tgttaatggt ttttcaccat
     4081 gatagataag atctttttta ccttctattt taaaatcagg caattctttt gccaaagcct
     4141 tacttcctaa aaaattctca aaagaaaaat ttgacaatac actaatgcca aataaaccaa
     4201 atcctatatt ttttagaaag tctctacgat tttctttttg atcgttctgt ttcattgaaa
     4261 tatccttaaa tatttatata atcttttatt ttattataaa tt
//
LOCUS       DARBBO010000114         4110 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.114, whole genome shotgun sequence.
ACCESSION   DARBBO010000114 DARBBO010000000
VERSION     DARBBO010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4110
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.114"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            26..1153
                     /gene="ftsW"
                     /locus_tag="SB854_001575"
     CDS             26..1153
                     /gene="ftsW"
                     /locus_tag="SB854_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009494415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HEG0957548.1"
                     /translation="MLITIGIVFSYSLTAFTVLFLDYSEFHFFIRQLFFGISGILIMF
                     FISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKRWIRLGPLSISPV
                     EFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGYIYITQNDLGQSV
                     ISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIASWWGNIQDAFLP
                     MLPDWLANALRVSSNSEPYQISHSLNAIAHGGMFGEGLGLGTFKLGFLSEVHTDFVLS
                     GITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIALLLLFSFFMNAFG
                     IISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            1150..2178
                     /gene="murG"
                     /locus_tag="SB854_001576"
     CDS             1150..2178
                     /gene="murG"
                     /locus_tag="SB854_001576"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEG0957549.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFTQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(2149..3311)
                     /locus_tag="SB854_001577"
                     /pseudo
     CDS             complement(2149..3311)
                     /locus_tag="SB854_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
     gene            complement(3319..>4110)
                     /locus_tag="SB854_001578"
     CDS             complement(3319..>4110)
                     /locus_tag="SB854_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0957550.1"
                     /translation="KYQEFDGFKSPESIFVDKNYVYVSNVGEKLEPLAKDNDGFISKL
                     DKNGKVLEYKFLTHLNAPKGMMEIGKTLYVVDIDVLRGFDLKTKKEIFNLPIKGAIFL
                     NDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLDLAKFGGPNGLYLDRKKHKLF
                     ITGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIVPYKDGLLVSSWGNNLNGYIY
                     NLDNVKSVKLELPLMKGPADIFIEGNILWIPKMAEGKIFKVELNK"
BASE COUNT         1472 a          672 c          571 g         1395 t
ORIGIN      
        1 taaaagatta ttttatttaa gttgtatttt aatcaccata ggaatagtat tttcatactc
       61 tcttacagct tttactgttc tttttcttga ctatagcgag tttcattttt ttattcgtca
      121 gctttttttt ggaattagcg gcatacttat aatgtttttt atttctcgat tggatcctga
      181 taaagcactt tctaaaaaaa ttattttagc tattttgatt atttctttta tctttatcat
      241 cattttgcca tttttacctt ctgcattagc aacagctagc ggaggagcta aacgctggat
      301 acgcttaggc ccactctcta tctctcctgt ggaatttttt aaaataggat tgatttattt
      361 tttagcatgg agctatacaa ggcgtattga tgatagcaaa aaagccatca gacacgaggc
      421 tttaattctt ctgccttatt gtatcttagc ttctatagtt ataggatata tttatatcac
      481 tcaaaacgat ttaggacaaa gcgtaatttc tttctttttg attctagctt tagctttttt
      541 tgcaggagct agtaaaagac tttttgcttt tggaacttta atcattatga tgataggtat
      601 aatggtaatt tttagtaacc aaagaagaat tcaaagaatc gcttcttggt gggggaatat
      661 acaagatgct tttttaccta tgcttcctga ttggctggca aatgctttaa gagtaagtag
      721 caacagcgag ccttatcaaa tttcacactc tttaaatgct atagcccatg gaggaatgtt
      781 tggcgaaggc ctaggacttg gaacttttaa attaggcttt ttaagtgaag tgcatactga
      841 ctttgttctt tcaggaatta ctgaagaaat aggactttta ggtcttgggg ttatttgcta
      901 tatttatctt tggatgattt taagaatttt tagaattgca ggaagatgtg aagctaaaca
      961 agattttatt ttttgttcag gcatagcctt acttttactt ttttctttct ttatgaatgc
     1021 ttttggtatt atttctctta ctccactaaa aggtgtagcg gttccacttt taagctatgg
     1081 aggaagttca atgtgggcaa tttgcatagg cataggatat gtattaatga tttcaaaaaa
     1141 ggttaaatta tgacaatagc tttaacaggt ggtggaactg gaggacattt ggccatagtg
     1201 cgttgcttat tagaaagtgc gattaaaaaa aatatagaat gtgtatacat aggcagtcaa
     1261 aatggtcaag ataaagcttg gtttgaaaat gaagtacgct ttaaggaaaa atttttttta
     1321 agctctaaag gagtggttaa tcaaagcaaa tttgacaaaa tcagttcttt actccacacc
     1381 ttaaaactct ccaaagattg tagagaaatt tttaaaaaat accacatcca agccgttttt
     1441 agtgtaggtg gatacagtgc agctcctgca tcttttgcgg ctttattctc acatttgcct
     1501 ctttttatac atgaacaaaa ttcaaaaagc ggctctttaa atatgctttt aaaacctttc
     1561 gctacaaaat tttttagcgc ctttgaaaaa gaaattagcc cttatcctgt agcagataaa
     1621 ttttttgata atgctaggat tcgcaaagaa ttaaaaaata ttattttctt aggaggatca
     1681 caaggagctc aatttatcaa cgaactagct ttaaatttag caccaaaact tcaagaacaa
     1741 aatatcaaaa tcatccatca atgtggaaaa aatgattttg aaaagtgcaa aaaacattat
     1801 caaagcttaa atatccaagc tgatattttt gattttagtt taaatttgga agaaaaaatg
     1861 aaaaatgcag atctggctat atcaagagca ggtgcaagta ctctttttga actttgtgct
     1921 aatactttgc ccactatttt tataccttat ccttatgcag ctaaaaatca tcaatacttt
     1981 aatgctaaat ttttacaaga tcaagcttta tgccaaattt ttacgcaaaa ctctattaat
     2041 cttgatgaat tttttaagtc aatattaaaa ctaaatctag aaaatatttc tacaagattg
     2101 caaaatataa cccaaaaaaa tggcgcagat atgctaatcc aaaaagcttt atttgataat
     2161 ttgactttta taagataaat atccaaagat atttactaaa attccaacaa aaactaacat
     2221 caaaatagca aatgaaaaat tttcaaattt gtcatgcaaa aaacctataa tccattgtcc
     2281 ttgtgctgca attaaatatc caaaactctg agctaaagca gaaagtctcg ctgctatttg
     2341 agcattagag cttttttgtg caataaaaag caacgcaatg ccaaaaactc caccccatgg
     2401 aaaacccatg ataaaagcac tgatagtaat agaaatttta ctatcaaaaa taaagagcat
     2461 accaaaagcg atcacataca tactgcacaa acctgctatg taaaaagtat gtaaattttg
     2521 tcttaatttt cctaaaagta aagggccaaa aagagacact ggagctgcaa caagttgagc
     2581 aaataaaacc atacttgtag aaaattcttt atcaaatcct ttttctacaa caatttgaac
     2641 ataccaaaaa aacaaagaat aagctaaaaa actttgaaat cccataaaaa gagtaatttt
     2701 ccaagttgtt aaatttataa aaagattgat ttttttatga gcttttttct taatacgaaa
     2761 aaatctacca tttttagctt gaggatagta aactactaaa gctacaaaag aaaaaatagc
     2821 ccagaaaaac atagctccag ctaaatcaaa tacactaagc aaaggtatag ctaaagcaat
     2881 acccataatc gaagaaatac tcaaaacaag actataaatt cccattatac ttgccatttt
     2941 ttttggaaat ttttctttaa taaaactagg aagtaaaaca tttgcaattg ctataccaca
     3001 gcccattgct aacattccta aaaataagcc atatacacca aaataagaac gaataatttc
     3061 gcctaaaaaa attaaaaaat tccaaaaaca atagcacgaa taggagaaaa ataccccaca
     3121 ataaaagaaa tacttccaaa agctatcaaa ggaagacttg taagtatgcc tgctacggtt
     3181 gagtttaaat aatacttatc tttaataata tcaataatag gccccactgc agtaattggg
     3241 gctctaagat taaaagctac aataataaca ataataacat taatccaaaa tatcttttta
     3301 aaagaagcca taaaagcctt atttgttaag ttctactttg aatattttac cttctgccat
     3361 cttaggaatc cataaaatat taccttcaat aaatatatct gcaggacctt tcatcaaagg
     3421 aagttcaagt tttacagatt taacattatc taaattataa atatatccat ttagattatt
     3481 tccccaagaa cttaccaata aaccatcttt ataaggaact attccatcat aagattcttt
     3541 ttcattttta attatactga gttcttttgt atttaaatca taagccatta caacaccgcc
     3601 acttacacca tcaggatgat aaccagttat aaaaagctta tgtttttttc tatctagata
     3661 taacccattt ggaccgccaa attttgctaa atcaagtttt aataattcat catattgctt
     3721 agtttttaaa tcaaccttta aaataagccc tgtgccagta tcgctaacca aaagcgtatt
     3781 gtcgtctaat ttttctatgt catttaaaaa gattgcacct ttaataggta aattaaaaat
     3841 ttctttttta gttttaagat caaaaccgcg taaaacatcg atatctacca cataaagagt
     3901 ttttccaatc tccatcatgc cttttggtgc attaagatgg gttaaaaatt tatattctag
     3961 cactttgcca tttttatcaa gcttagaaat aaatccatca ttatctttcg ccaaaggttc
     4021 aagtttttct cctacattag atacataaac atagttttta tctacaaaaa tactttcagg
     4081 gcttttaaaa ccatcaaatt cttgatattt
//
LOCUS       DARBBO010000115         3823 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.115, whole genome shotgun sequence.
ACCESSION   DARBBO010000115 DARBBO010000000
VERSION     DARBBO010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3823
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.115"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            5..1165
                     /locus_tag="SB854_001579"
     CDS             5..1165
                     /locus_tag="SB854_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEG0957551.1"
                     /translation="MKSARKNKNIIIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLMLDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFIRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIHQMSYMV"
     gene            1170..1670
                     /locus_tag="SB854_001580"
     CDS             1170..1670
                     /locus_tag="SB854_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEG0957552.1"
                     /translation="MQKLFLTFFYSGSVKKASGTFGTIAALIPAFFILKYLGINTLFL
                     LSILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFILAFV
                     LFRLFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDI
                     NLKDLF"
     gene            1749..2012
                     /gene="rpsT"
                     /locus_tag="SB854_001581"
     CDS             1749..2012
                     /gene="rpsT"
                     /locus_tag="SB854_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEG0957553.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGNK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            2031..3098
                     /gene="prfA"
                     /locus_tag="SB854_001582"
     CDS             2031..3098
                     /gene="prfA"
                     /locus_tag="SB854_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEG0957554.1"
                     /translation="MLASKLDPFFKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGTGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(3112..>3823)
                     /locus_tag="SB854_001583"
     CDS             complement(3112..>3823)
                     /locus_tag="SB854_001583"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HEG0957555.1"
                     /translation="SNLVDLCKKFGGIEQVQDVFLKSVDFNGLDLVYNDKENLRVEFP
                     KKADENTIKDAIISLCMSAKSEQNFSGVEKELNEFMLSFNSVALATLNANGEVVCSYA
                     PFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAVSVILRKRLRYRVNASF
                     LERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKGRFVKGFGQAYDIENG
                     NVAHVGASGNPHKFLHKH"
BASE COUNT         1387 a          592 c          595 g         1249 t
ORIGIN      
        1 aaatatgaaa tcagcaagaa aaaataaaaa cattatcata gatcaaaatg aatttggcat
       61 cttatcactt attaaagaag gtttgctagg cacttgcact catttaatga atgaaaaaga
      121 agtcaatgaa atcattaaat caggaaaatt taaaggagaa agctttccct atcccttaag
      181 ctttgcacca aaaaatgccg aagaagcact aaatgatata aaatctggcg atagaatcga
      241 tctcatgcta gatgaaaaag tagtaggaca tatagatttt aaaagccaat ttaaaaataa
      301 taaaaatttt tctgatattt tcagtcctaa cacttgctct ttagaagaca tgggaacaac
      361 ttgcataagt ggaaaaatag aaatttataa ttctcaaatt gaaaaaataa aagaaaattt
      421 tcaacaaatc aaaaacaatc ttaatgcaca aaaaattact gctatagttt caagttttga
      481 tcctttgcat cgtgcccatg aaagaatgtt tcgttggact attgataaag cagatttagt
      541 tgtaattttt cttgtagaat cttttgatgt aaatgggttt gaattcgaac ttaaagaagc
      601 atatttgaaa aaatttattc aaaactatct tccaccggat agaattttca tttttccatt
      661 aaaaaatatt aatatttttc acgctcattt aaatcctggc ttagaaagta ttatcgcaaa
      721 aagtctaggt tgtaccaaac tagtagtagg acaaaatcat acaggacttg gaatgtttta
      781 tgatgataac caaccaaaaa ccatacttga tgatttttcc aaggactatg gcatagaagt
      841 gatcgttttg cctgaatttg tattttgcga tcaatgtcgc atgattgtta gcacaagatc
      901 ttgccctcat ggttgtcatc accatttgca ctataattct cagtctttaa aagatttact
      961 aagagcgggt atcattcctc cagcaatttt catacgcaag gaagtatcta gtgttatttt
     1021 aacttctctt tttccaaata gattaaaaaa tatgcaaaaa atttataatg agctttttcc
     1081 aactgatgga attttagaat acaaaaatga tgaagaattt tatcaaaaac ttttagaaat
     1141 tcatcaaatg tcttatatgg tgtaataaaa tgcaaaaatt atttttaact tttttttatt
     1201 caggttctgt aaaaaaggca agtgggactt ttggtactat cgctgcttta atacctgctt
     1261 tttttatact taaatatctc gggattaata ctttgttttt actaagcatt ttaatttttg
     1321 ttgcaagtat tcgtgttata gatgattatg aaaaaaaaac aggaattcac gatgacaaac
     1381 acatagttat cgatgaggtt gctggagttt ttcttgcttg tgctattgca gcaagtgttg
     1441 aaaactcgat agtcaatttt attttggctt ttgttttatt cagactcttt gacattacaa
     1501 aaccttctat tattggcaag atagataaaa aagtcaaagg cggactaggt gtaatgcttg
     1561 atgatatgtt agcaggattg tttgctggac ttttaagtgc ggtaatttat ggatttttac
     1621 ttaaatttaa tttagttttt tgggatataa atttaaaaga tttattttga aattttgctt
     1681 aaattaatta aattttaaat tttattctta tataatttag tctttaattt caaaaaagga
     1741 aaatataaat ggcaaaccat aaatctgctg aaaaaagagc aagacaaact attaaaaaaa
     1801 cagaaagaaa tagattctat agaacaagac ttaaaaatat aactaaagcc gtaagagaag
     1861 ctgcagcaaa tggaaataaa aatgctgcta atgaagcttt aaaagtagct aataaaagca
     1921 ttcatgctat ggtaagtcgc ggtttcatta aaaaacaaac tgcttctcgc cgtgtaagcc
     1981 gcttagccct tttagtaaat aaaatcgcat aattttctat atagttttta atgttagcta
     2041 gcaaactaga tccttttttt aaacgctttg aagagttaaa ttctcttctt agcagttctg
     2101 atatactcaa cgatatcagt aaaatgacta cactctctaa agaacaaaaa aatttagaac
     2161 ctatcgtttt aaaagctaaa gagtatttaa aaactttaga caatatagaa gaaaataaag
     2221 ctttgctaaa cgatccagaa cttggggaac ttgcaaaaga agaactaaaa actttagaag
     2281 aattaaaacc gaaacttgaa gaagagatta aaattttact tcttcctaaa gatcccaatg
     2341 atgaaagaaa tatttttctt gaaattcgtg caggcacagg tggcgatgag gcatctttat
     2401 ttgtgggaga tcttgtaaaa gcttatgcaa gatatgctga aaatcgcggc tataaacttg
     2461 agattgtaag ctctagtgaa ggaagcgtag gtggatttaa agaaatcatc atgcttgtta
     2521 aaggaacagg ggcttattca agacttaaat atgaaggtgg aacgcaccgt gttcaaagag
     2581 ttcctcaaac agaatcccaa ggacgcgtgc atacttctgc tatcaccgtg gcagtaatgc
     2641 cagaagttga tgatatagaa atcgaaatca atccaaacga tcttaaagtt gatgttatgc
     2701 gatcttcagg acatggtgga caaagtgtaa atactactga ttcagctgtt cgtatcactc
     2761 atatccctac aggtatagtt gtagtcaatc aagatggaaa aagccaacac aaaaataaag
     2821 aaagtgcgat gaaagtccta aaagcaaggc tttatgaaat gcaagagagt gaaagactag
     2881 caaaagaaag tgaagcaaga aaatcacaag taggaagcgg agatagaagc gaacgcattc
     2941 gcacttacaa ttttccacaa aatcgtatca gcgatcatag aataaatctt actttatatc
     3001 gcttagatgc cattatgcaa gatgggcttt ttgatgaaat catagaacct ttaatcactc
     3061 atcatcaagc ccaagcttta caagaacaaa atttataaga ttttatataa attaatgctt
     3121 atgtaggaat ttatgtggat ttccactagc acctacatgt gcaacatttc cattttctat
     3181 atcataagct tgaccaaaac cttttacaaa gcgtcctttt ttaaattcaa gctttactag
     3241 atgaaaatca agcatcttgc gtatagtttt aatgcctcct tctcctccgg tttgtttttc
     3301 aaactcatca taaatttgat caaatctttc acctctctct aaaaagcttg catttactct
     3361 atagcgcaat cttttacgaa gtataacaga aacagcttta ctctcatcct ctaaaaacat
     3421 tatttctata ttgtttggat ttactttgat gttgttaaaa tgttcactta cttcacttat
     3481 ataaatataa tttccccatt gtgtgcttac aaaaggtgca tacgagcaaa caacttctcc
     3541 atttgcattt aaagttgcca aagctacaga attaaaactt agcataaatt catttaattc
     3601 tttttctaca ccactaaaat tttgctcgct ctttgcactc atgcaaaggg atattatagc
     3661 atctttaatc gtgttttcat cggctttttt aggaaattcc actcgtaaat tttctttatc
     3721 attgtaaaca agatctaagc cattaaaatc aacacttttt agaaaaacat cttgtacttg
     3781 ctcaatacca ccaaattttt tacaaagatc gactaaattt gat
//
LOCUS       DARBBO010000116         3818 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.116, whole genome shotgun sequence.
ACCESSION   DARBBO010000116 DARBBO010000000
VERSION     DARBBO010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3818
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.116"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..592)
                     /locus_tag="SB854_001584"
     CDS             complement(<1..592)
                     /locus_tag="SB854_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HEG0957556.1"
                     /translation="MDLKSLENNRLYILKRLGVLKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEEQIYIK
                     LQDKNFTLNHVFSKENHYLIATLSNPFFIDIKKDLES"
     gene            complement(592..2400)
                     /gene="typA"
                     /locus_tag="SB854_001585"
     CDS             complement(592..2400)
                     /gene="typA"
                     /locus_tag="SB854_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEG0957557.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2535..2858
                     /locus_tag="SB854_001586"
     CDS             2535..2858
                     /locus_tag="SB854_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957558.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDKNEKMA
                     RISSELTEILENEENLEKILNAKNLEELLNILIALNEDKMIKVYEDSYLKEKFPNVMV
                     DKFLK"
     gene            2875..>3818
                     /locus_tag="SB854_001587"
     CDS             2875..>3818
                     /locus_tag="SB854_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG0957559.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSTTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSIDETNEFLPDHMKISQKEVVNEAMSRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSMQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNIKNDEFAKNLTEELNIKDKKNQDNLNKDNNLKDLN"
BASE COUNT         1318 a          645 c          550 g         1305 t
ORIGIN      
        1 tgctttctaa atcttttttt atatctataa agaaaggatt gcttaaagta gcaataagat
       61 aatgattttc tttagaaaaa acatgattta aagtgaaatt tttatcttga agtttgatat
      121 aaatttgctc ttcattttca aagctaggat ttttgtttgc acttaaaatt tcgagcaaaa
      181 ttccgcaaaa aaagcgttta ttttcgtcca aaaactgaat atcataaatt ttaaaatcct
      241 taaattcaaa gcagttttga cttttaaatt ctttcaaatc ctttgtaagt cctaatttta
      301 aaaagtcttt ttggcttaaa ctttgctttt taaattttgc cccaaaacga cgcaaaaata
      361 aatttaaagc attaatttgc aattcttttt gtgcgagttt tagtttttta gctgtaaaac
      421 gaaagaaaaa aacacctaca aaaacagcta aaattactgc gattaaggca tctcttataa
      481 aaacaaaggc taaaaaacct acaagtaagg cttcgataat gcttaggaat tttaagactc
      541 ctaagcgttt aagtatataa agtctattat tttctaagct ttttaaatcc attaagattt
      601 tgctttttcc attctttttc tttgagttgg atcaagatag cgtttgcgaa cacgcacatt
      661 tacaggtgta acttctacaa gttcatcttc ttctatccac tctaaagctc tttcaagact
      721 taattttcta ggtggcacaa gcttgattgc atcatcgctt ccacttgctc ttacattggt
      781 aagattcttt cctttgatag gattaacatc taaatcattt ggacgagagt gctcacctat
      841 aatcataccg gtataaactt tagtttgagg ctctatgaaa agtactccac gctcttgaag
      901 gttaaacaaa gaatacccta aagccacgcc attttccata gaaattaacg ctccattatt
      961 acgcttttca accgcaccgc taaaaggacg gaattctaaa aagctatgat tcatcacgcc
     1021 ttcgcctttg gtatcagtta aaaactgact tctaaaacct ataagtccgc gtgctggaat
     1081 ttcaaactca agtcttgttt gtccatcgcc tgttggcgcc atggttttca tttcagcttt
     1141 tcttttgcca agtttttcta ttaccgcacc gctaaattct tcaggcacat cgataactaa
     1201 atgttcaaaa ggttctgttt taactccatc ttcaactttt acgataactt caggtcttcc
     1261 catgcaaaac tcaaaacctt cacgacgcat attttcagct aaaatagtga tttgaagttc
     1321 gcccctaccg cttactttaa atttaccttc gcctgtgctt tcgtatttca tagcaatatt
     1381 agttttcatt tcagcttcta aacgttcagc gattttattt gaagttacat gttttccttc
     1441 agttcctgct aatggtccat catttacaga aaatactatg cttaaagtcg gctcttcaat
     1501 gtgtaaagga tcaagtggca taggattgtt tggatctaca acgctatcac ccacatctaa
     1561 agcttcaaaa cctgctatag ctacgatatc tccacttcct gcttcttcga tgtccatttt
     1621 ttctaagccc ataaagccaa tgagttttga aattctacca tttaccttgg taccatcagc
     1681 ttttgcaagc attacgcttt ggtttttctt cacaacccca ttgaaaattc tagcaatgcc
     1741 tattttacct acgaaattat cataccctaa agtgaaaact tgaagttgta aaggattgtc
     1801 atttgtacca cttggcgctg gaacgcgttc aagtatggtt ttaaaaagtg gctccatatt
     1861 atcactttca tcgtttagat caagcttagc ataaccattt tttgctgcag cataaactat
     1921 agcaaagtca agttgctcat cgtttgcatc tagggctaca aaaagatcaa aaatttcatt
     1981 gatcactctt tcaggatcag cagctggttt gtcgattttg ttgattacaa ctataggttt
     2041 aagccctaaa gataaagctt ttttaaccac gaatttagtt tgcggcataa cgccttcttg
     2101 agcatctact aaaagcaaaa ctccatcaat catttttaaa acgcgttcta cttctccgcc
     2161 aaaatcagca tgccctggag tatctatgat gttgattttt gtacctttgt aattgatcgc
     2221 tgtgtttttt gaaagtatgg taatgccacg ttctttttct atatcgttgc tatccataac
     2281 gcgttctgaa atttgttctc tttcgctaaa ggtgcctgat tgttttaata attcatctac
     2341 catagtggtt ttaccatggt caacgtgagc tataactgct atatttctaa tgttttccaa
     2401 attttcttct ccaaagctaa atttttaaaa gcttagatta tacaaaaatt taacttaaac
     2461 tacaaagcat caaaacttgg aacacttctt gctttaaaga cttgtgaaat taaaatttta
     2521 aaaaggaagt taaaatgtca aaaccattaa atgaagagat ttttattgaa tttaaaagcg
     2581 atttagctga aagaaaaaat gaagttttgc ttcaagtttt agaactttta gaaactttta
     2641 gatcagataa aaacgaaaaa atggcaagaa tttcaagtga gcttacagaa attttggaaa
     2701 atgaagaaaa tttagaaaaa attttaaatg ctaaaaattt agaagagctt ttaaatattt
     2761 taattgcttt aaatgaagat aagatgatta aagtatatga agattcttat ttgaaagaaa
     2821 aatttcctaa tgtaatggta gataaatttt taaaataatt tttttgaagg aaaagtgatg
     2881 tcaaatttag ctccgcaaaa tgatgtttta aatcttacgc cgagtaaaac ttctactact
     2941 agcagttctt ttagtaaaac tagtaaaaat aaagaacatg aaagtagtga tagtaaaaat
     3001 tcaactcaag atgatacgga aagtttttta aattctttgc ttaattctat tgatgaaacc
     3061 aatgaatttt tacctgatca tatgaagatc agtcaaaaag aagttgttaa tgaagcgatg
     3121 agcagacttc aaaaaggagc ttttgatgag agcgataaga taagcatttt cgaatctgct
     3181 tcttttatgc aaattctttc tttgttagat aagctaaaaa cagatacagc agatgttaaa
     3241 ctagcaaatc tttctactca actttcaagt cttattaaaa cagaggctaa ttttaatgct
     3301 ttaaaaggtg catcaaatct tagtgagctt ttggacatag ctaaagatct gggcttaaat
     3361 gtaaaaaata ttaaagtaga tcgtcttctt gatcttaaag caacttttcc aaatttagat
     3421 aaggctgatt tttttaaggg tgctgtggat aatgttttta aagaaatcat caataataaa
     3481 atttccaatg tgagtaaaaa tttaaatcac aatttagaaa atacaactca tactacaagc
     3541 actcattcta tgcaaaaaac aaattctaaa gatagcggtt ctttgctttc tcaaacttta
     3601 aaaaatttag actccatact ttcatccaaa gaaagcaaac acgaaaaaaa cgataaagtt
     3661 aaatcaaaaa tagaagaaga taccacagat gctaaaaata ctttaaaaaa tatcaaaaat
     3721 gatgagtttg caaaaaattt aacagaagag ttaaatataa aagataaaaa aaaccaagat
     3781 aatttaaata aagataacaa tcttaaagat ttaaataa
//
LOCUS       DARBBO010000117         3672 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.117, whole genome shotgun sequence.
ACCESSION   DARBBO010000117 DARBBO010000000
VERSION     DARBBO010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3672)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3672)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3672
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.117"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..895)
                     /gene="selD"
                     /locus_tag="SB854_001588"
     CDS             complement(<1..895)
                     /gene="selD"
                     /locus_tag="SB854_001588"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(845..847),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HEG0957560.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGTGILSTALKAQMLNQKHLDIMLKNMIELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELTPDLNEEKLLLCDPQTSG"
     gene            complement(905..1477)
                     /gene="yedF"
                     /locus_tag="SB854_001589"
     CDS             complement(905..1477)
                     /gene="yedF"
                     /locus_tag="SB854_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HEG0957561.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLNPVVDENAQEFCIKVQKKNFDSSEVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(1588..3672)
                     /gene="ccaA"
                     /locus_tag="SB854_001590"
     CDS             complement(1588..3672)
                     /gene="ccaA"
                     /locus_tag="SB854_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HEG0957562.1"
                     /translation="MGLKLIFSVAAVVVIGLVILISLITKQVSQNITKNTEDILASIT
                     KEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDNSAYSNF
                     TYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIANLQVVQD
                     ILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLDFSDIAT
                     YLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKAISEGKN
                     GVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGASFIFIF
                     VVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGAMGRIIN
                     ENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKDVLNRMLDV
                     LQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLASSNFAK
                     DLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVASQADDI
                     KNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKSLSEIEA
                     NINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITNEVNQIA
                     AAILEDVNKKRF"
BASE COUNT         1209 a          637 c          454 g         1372 t
ORIGIN      
        1 ctcctgaagt ttgtggatca caaagtaata atttttcttc atttaaatca ggggtaagtt
       61 cttttataaa ttctaaattt ttataagctc cagcaggaat taaacccata ttaaaatact
      121 cttttactcc atctaaaaaa ggaagttcac tttcaaaaat ttcaaaagaa atatttttat
      181 ttagcatttc ttttaaatgt cctaaaagtc caaaacctgt aacatcactc atggcacttg
      241 gatgaaattt aagagcaatt tgactggctt tataatttaa ctctatcatg tttttaagca
      301 ttatatctaa atgtttttga tttaacattt gcgcctttaa agctgtactt aaaattcctg
      361 ttcctaaagg cttggttaaa atgatacaat ctccgatttt agaagtatta ttagcaataa
      421 atttactagg atgtactttt cctgtaacac taagtccaaa aaaaagctcg gtgctttcta
      481 tagtatggcc acccacgact aaagcattac attctttaac tttatcattt gcaccttcta
      541 aaagctcttt taagatgttt aaatcatgat tgcaagtatc aaaacctact atatttaagg
      601 cattaattac ctctgcaccc atagcaaaaa catcgcttaa agcatttgct gcagcaatag
      661 caccaaaatg ataagcacta tctactatag gagtgataaa atcaagcgtt tgcaccaaag
      721 ctaaatcggg gctgatttga tatacgcttg catcttcatt atttccgata tcactaagta
      781 aagcaggagt tttttgcatg aaatttaaaa ttgttttaag accacccggg cttaatttcg
      841 ctgctcagcc tgctgcttta acaaaatgcg ttaaattttg atttttatat tgcagtgttt
      901 ttccttatag agtaatgatt tttgctttac caaaaagctc gtttaaaatt tcataagcat
      961 tgcctatatt tcctatttta agttctttgc ttttattaaa aaattctaga caagctccac
     1021 aacttatgat ctcaatacct aaattttcaa gttctttcat agctaaatgt gctttatgat
     1081 tttcatcaac attgattaaa acactttcat ttacgcaaag aattttactt ggagcatgat
     1141 ctaaattttt taaggtactt aaaaatccta caagtaaatt ttgtcccaat tcaccctcac
     1201 ccactttgtc ggtttttaaa aataaaacat tataatcgtg aatatttact tcactagaat
     1261 caaaattctt tttttgtact ttgatgcaaa actcttgtgc attttcatct acaacagggt
     1321 ttaaatttaa agagttaaga aattttacaa cattattttt tgaaataata gaatttaaaa
     1381 caatttctaa aatttcattt tcttgaagtt tttcaagagc gttttttgtt tcaactatag
     1441 gctgaggaca agatagattg cgacaatcaa ttttcattat ttttccttga tattagcttt
     1501 gaaaaataat attattttat tacttgtttt gtgtttaaaa attttaaata atatagaaaa
     1561 aatttaaaag ctcaaaaatg agctttttta aaatcttttt ttattcacat cttcaagaat
     1621 tgccgcagca atttgattga cttcatttgt tatattattg gtgacatttg caacttcgac
     1681 attttcctta gttacagttt caagttgtgc tatagcatcg ttaatctgtg tgattcctgc
     1741 tgtttgttct tttacagatt ctgctacttc atttacgctt tgaacaagta tattaatatt
     1801 tgcctcgatt tcagataagg attttcctgt tctttccgca agctgtctta cctcatctgc
     1861 aacaactgca aaaccacgcc catgttctcc agcacgtgca gcttcaatag ctgcatttaa
     1921 agcaagaaga ttcgtttgct cagcgatatc tttaatcaca ttgacaatat tttttatatc
     1981 atcagcttgt gaagcaacct caactgtttt tccacttaca ttttgcatag aagaattaat
     2041 ctcctccaca gctgcagccg attgttctaa agaactcgct tgtgcattag agccatcagc
     2101 aagtttttgc atagaatttt ttaactcttc tgactgattg gctaaatctt tagcaaaatt
     2161 tgaagaagcc aaaagcatct ttttaatttc tttgcctaaa atattagttg taatctcaac
     2221 ttcaccttta gcattaaata cttctgtact aaaatcaaga gccttataac tatcaaaaac
     2281 tctattaatt tcattcatat tagaaccaat tttactttgt aaaacatcaa gcatcctatt
     2341 aagaacatct ttaagttcta ctaattgagg atttatagga tttttagtaa ttcttgcagt
     2401 taaattaccc ttttcgattt ctctagcagt ttgcaccgat tcatctacag cattttgatc
     2461 ttgttctaaa gatatttgaa tcttttcaat attttcattt atgattcttc ccattgctcc
     2521 tagctcatca ttagcacgaa tttcaatagc cttaggttca attttttcat gatttaaaaa
     2581 acggaaaaat gattctaaag aactaagaat cacaggcaat ctagatgcga caatttttct
     2641 tacgcaataa taaaccactc ctaaaacaac aaaaataaaa ataaaagatg caccaagaat
     2701 aattaattgt aattttttta agggtttaaa tactgaatat ttaggagcag ttaccaaaac
     2761 tgcccaagaa ctatcttgca ctttaaaact attaatcgca gcataagaat catcaccatc
     2821 agaagctata tagttaaaaa ctccattttt tccttcactt atggccttat aagtttcttg
     2881 tgcaccttta ttaggattga tatcttttaa attttttaaa actagatttt tatttggatg
     2941 tatcgccata aaaccatctg aatttaaaag aactcttaat tcaccatcat atttttgacc
     3001 tttagggtct aaaagataag tagcaatatc tgaaaaatct aaagtcatgc ctatgacacc
     3061 tacaacttga ttttttcgat caaaaatagg catagcaaca tttacagcat caaaatcttg
     3121 accttctaaa ttcatcttaa taggacggcc tatatatact ttattttccc catattttgc
     3181 tttttttaat atatcttgca caacttgcag attagctatt tcatcactag cttgtattgc
     3241 ttttattccg cctttattat ccttttcttc atcagcgtaa agcataacaa attttccact
     3301 ttgagtatta aaaaatttac tctcttcttt aaagtattct ggcggatcaa taagatataa
     3361 ataagtaaaa ttagaataag cactattatc aaaagtattg gttataatat ttgttatatt
     3421 gtctatatct aaatcttctt tagaggttga tctaaacatt tctgttaaag tacctgaaat
     3481 acttttattt aaagcgatca tttccccaaa aattccttga gtttgagtag catattcttt
     3541 cgtgatagaa gcaagaatat cttctgtatt tttggtaata ttttgactta cttgttttgt
     3601 gattaatgaa attaaaataa caagtccaat aacaacaaca gctgccacag aaaaaataag
     3661 ttttaaacct at
//
LOCUS       DARBBO010000118         3599 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.118, whole genome shotgun sequence.
ACCESSION   DARBBO010000118 DARBBO010000000
VERSION     DARBBO010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3599
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.118"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            89..220
                     /locus_tag="SB854_001591"
     CDS             89..220
                     /locus_tag="SB854_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HEG0957563.1"
                     /translation="MSMKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQLKDKI"
     gene            217..1221
                     /locus_tag="SB854_001592"
     CDS             217..1221
                     /locus_tag="SB854_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HEG0957564.1"
                     /translation="MKKIFFMFLTAVSFLGASELNIYSARHYNADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNTNIDISKMKNYEDLAKAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLENLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAAKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            1221..2837
                     /locus_tag="SB854_001593"
     CDS             1221..2837
                     /locus_tag="SB854_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEG0957565.1"
                     /translation="MYKTLKYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSDLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISMGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRIDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALITALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKFFHMSLLGNSLLVLVFAYIIRFLASAIYSLEGGYNKIHLNIDEASLNLRTSYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            2821..>3599
                     /locus_tag="SB854_001594"
     CDS             2821..>3599
                     /locus_tag="SB854_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEG0957566.1"
                     /translation="MMLEIKNLSKNFGKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAMARGCKLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAK"
BASE COUNT         1216 a          414 c          577 g         1392 t
ORIGIN      
        1 aaatatttat cagttataaa attattaagt tactttatat ttacttttta atattaatat
       61 ttcttatcaa aatatctaaa aggaattaat gtctatgaaa aaaataattt tatttttact
      121 atgcgttggc tttgcttttg cttgctctga acattctcat accgatttta aagatcttaa
      181 taaaaccgag tataattctc aattaaagga taaaatatga aaaaaatctt ctttatgttt
      241 ttaacagctg tttcattttt aggtgctagt gagcttaata tttactcagc aagacattat
      301 aatgctgatt ttgaaatcat aaaaaaattc gaagaaaaaa caggtattaa ggtcaatcat
      361 actcaagcta aagcttcaga acttattaaa agactttctc ttgaaggaag taattctcct
      421 gctgatattt tcatcacagc tgatatttca aatcttacag aagctaagaa tttaggactt
      481 ttatcccctg tttcatcaaa atatttagaa gaatttatac ccgctcattt aagagataag
      541 gataaagaat ggtttgcgat tacaaaaaga gcaagaatta ttgcttacaa caaaaacaca
      601 aatatcgata ttagcaaaat gaaaaattat gaagatttag caaaagctga atttaaagga
      661 gaaattgtta tgagaagtgc tacagctcct tatagcaaaa ctcttttagc atctattata
      721 gctaatgacg gaaataaaga ggctaaagca tgggctaaag gtgtgcttga aaatcttgcg
      781 acaaatccaa agggtgggga tagagatcaa gccagacaag tatttgcagg cgaagctaaa
      841 tttgcagtta tgaatactta ttatataggg cttttaaaga attctaaaaa tccaaaagat
      901 gtagaagtgg ggaattcttt gggtattatt tttcctaatc aagacaatag aggaacgcat
      961 attaacatta gcggtattgc tatgacaaaa tcaagtaaaa atcaagatgc ggctaaaaaa
     1021 tttatggaat ttatgttaag tcctgaaatt caaaaaattc ttactgatag taattatgaa
     1081 tttcctataa gaaatgatgt agaattaagc caaacggtaa aagattttgg aactttcaaa
     1141 gaagatcaaa tccctgtgag taagatagca gaaaatatta aagaagcggt taaaatttac
     1201 gatgaagtcg gttttagata atgtataaaa ccttaaaata ctataaactc ggggcaattt
     1261 tacttgccct ttttcttgct ttacctattt ttggtatttt tgctgaactt ttttatattt
     1321 tatttcaaaa ttttaataca agtgatttaa cccaattttc atctattaaa gaaaatttga
     1381 gtcatttttt tgattattta tttttaaaat tcatcaaaga tacttttata attagcatgg
     1441 gagtattgtg tttaagcttg attttgggtg tgagttctgc ttatttgatt gcaaattatg
     1501 atttttattt ctgtaaaatt ttagaaaaat tactcatttt acccttagcc atacctgctt
     1561 atattttagc ctttgtttat gtgggaatta tggattttca aggatttttt cacgaaaatt
     1621 ttggctttag gatagatttt ttcaatcatt atggtgttat ttttgttttg gctatttctt
     1681 tatatcctta tatttattta tttgctaaaa cagcttttaa aagtgaagct aaagaggctt
     1741 atgaagtagc taaaatcatg aaatattctg aatttagaat ttttacacgc gtggcacttt
     1801 tgagtgcaag acctgccatt ttttctggag ctttattggt tttaatggaa actttgagtg
     1861 attatggtgc aagtgcttat ttgggagtgg atactttttc ggctggaatt tttaaactct
     1921 ggtatgattt gaatgattct tattcttcta gtgttttatc gggtatttta atgctttttg
     1981 tatttttgat tatgtatgtg gattattatt ataaaaataa acatcattat agttttaatc
     2041 aaaatttagc tctttttatc aaaaaaagaa aattaaatcc tattaaacaa attctatcct
     2101 gtatttattg ttttatgatt gcttttgtag gttttatttt accttttatt tggctagttt
     2161 attgggggct aaaagatcat aagctttttg aatcgcaatt ttatattatc agttttcaaa
     2221 ctataatctt agctttaatc actgctttaa ttaccacttt tttagcttat tttttgatgt
     2281 ttagctctag gatagttaaa aatcattttt ttaatttatt tattttaaaa ataagttctt
     2341 tgggttattc tatacctgct gctgctttag ggattagcat tatagtgctt tttgtatttt
     2401 tggataaatt ttttcacatg agtttattgg gaaattcttt acttgttctt gtttttgctt
     2461 atataattcg ttttttagcg agtgcaattt attctttaga gggaggatat aataaaattc
     2521 atctaaatat tgatgaagca agtttaaatt taagaacgag ttattttatt ttatttttta
     2581 aaattcacac acctttaatg aaacattttt tatttttggc ttttattatt gtttttattg
     2641 atacgattaa agaacttcct ttaagtagaa ttttagcgcc ttttggcttt gaaactttaa
     2701 gtgttaaagc tttctggttt gcaagtgatg aaagaattta tgatgcagct ttgccttcct
     2761 tgtttatcgt ttttctttct ttaatggttg ttgtttggat ggataaaatc acaaggaaag
     2821 atgatgttag aaattaaaaa tttatctaaa aattttggaa aaatacaagc tttagaaaat
     2881 atcaatcttc atgtcaaaga aggagaattt ttaagcattt taggaggtag tggaagcgga
     2941 aaaagcacgc ttttaaggat tattgctaag cttgaacaag ctagttctta tgatttgttt
     3001 tcttgcaaag gtgaagtggc tttgatgttt caaaattatg ctttatttcc tcatttaaat
     3061 gttgagaaaa acatactttt tgcactttat gataaaaaag ataaaaatca aattttaaat
     3121 catttgctta aaacttttga aattgaagat ttaagatata aaaaaatcga tgaaatttca
     3181 ggaggacaag cgcaaagagt ggcttttgct agagctatgg caagaggatg taagcttttg
     3241 cttttagatg aacctttttc taatttggat caaaatttaa aacaggattt aagaagagaa
     3301 ttgaaaaaaa tgatagaaaa tcaaggcatt acggctatta tggtaactca tgatattgaa
     3361 gatgcttatt gtatgtctga tcaaatcgct tttttagaaa aaggaaaaat tttagctcat
     3421 gcaaatccta aagagcttta ttttaaacct gattttaaaa gtgcacaaat tttacctgat
     3481 ttaaatatca tagaagaaaa acttgattta gaagatgaat tttttgcttg gatagcttca
     3541 aaaaattata tttttggtta tgcagagctt aaaataggaa atcgctttga ggctaaaat
//
LOCUS       DARBBO010000119         3498 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.119, whole genome shotgun sequence.
ACCESSION   DARBBO010000119 DARBBO010000000
VERSION     DARBBO010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3498
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.119"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            115..1284
                     /locus_tag="SB854_001595"
     CDS             115..1284
                     /locus_tag="SB854_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEG0957567.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QTIKNAAISAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETNEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSEDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDEDIEKMRQAFEKRRNLALDMLKQIPKISIYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGIGFGMDGYFRLSYAISDEFIKKGLERIAYFIANYK"
     gene            1290..2067
                     /locus_tag="SB854_001596"
                     /pseudo
     CDS             1290..2067
                     /locus_tag="SB854_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906077.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
     gene            complement(2098..2439)
                     /locus_tag="SB854_001597"
     CDS             complement(2098..2439)
                     /locus_tag="SB854_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEG0957568.1"
                     /translation="MKIIQWNGAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHVQVLSGKIWFEVEKEKFELNALDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     IQRVNAVLKKP"
     gene            complement(2509..3471)
                     /locus_tag="SB854_001598"
     CDS             complement(2509..3471)
                     /locus_tag="SB854_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEG0957569.1"
                     /translation="MQGKKYEIFLNENEHSLITPKVSFKEILRYYYLYPKNAIPSFKL
                     PFFKPDLSGFSTPHITWLGHSSLFISFKEYKILIDPVFNTHASPISFINKAFKNAPIY
                     NVNDFNEIFAVIITHSHFDHLDAKSVKALKEKARFFITPLKVGNYLKSYGVSEKKIIE
                     LDWWSGIEFGDLKIIATPAQHSSSRGDGKNKTLWASFVMEFLSVDKRVFFSADGGYFT
                     HFKKIGEYFGDFDLACLESGQFNIAWPYSHSFPEQILKEAKDLNTKAVMPIHWGRFLA
                     GTHAWNEVVKFLYENLDLPLITPKMGEAYEVGAKFKQDFWWKEE"
BASE COUNT         1264 a          571 c          520 g         1143 t
ORIGIN      
        1 aaattaatac aaattttcac atttattgaa atttataact catttttaaa ttaaatttat
       61 tgtaaaaatg caattttctg ctaaaattaa acaaaaatta ttaaggattg aaaaatgctt
      121 acaaaaagat ctcaagtttt agaagaatct atcactttag ctatcactgc acttgccaat
      181 gaacttaaag ccaaaggcga ggatatcatt agtttttcag cgggtgaacc tgattttgac
      241 acaccacaaa ccatcaaaaa tgccgctata agtgctattg aaaaaggatg tggaaaatac
      301 actgctgttg caggaattcc tgaagtatta aaagctattc aaaccaaatt taaaaaagat
      361 aataatcttg attatgaaac aaatgaaatc atcaccaatg taggcgcaaa acactctctt
      421 tttgaatgta tagaatgctt agtagaaaaa gatgatgaag tgattatccc tagtccttac
      481 tgggtaagct atcctgaaat ggtaaaattt gcaggtggaa aacctgtatt tatagaaggc
      541 ttagaagaaa atggctttaa aattaccgct gaacaattaa aaaaagctat cacagctaaa
      601 accaaagttt tgatgctaaa ttctccttca aatcctgtgg gatcgattta ttctaaagaa
      661 gaattaactc aaattgctaa agttttagaa ggaacgcaaa ttactgtttt aagtgatgaa
      721 atgtatgaaa aacttcgcta tgatggtttt gattttgtag cttttgcaag tgtaagcgaa
      781 gatgctttaa aacgcactgt gaccattaac ggacttagca aatgtggagc tatgccagga
      841 tggcgttttg gctatatggc aagcaaaaat aaagccctaa tttcagccgt taaaagactt
      901 caaggacaaa gcacttcaaa tatttgctcc atcactcaac atgcagccat tcctgcttta
      961 aatggagaat gtgatgaaga tatagaaaaa atgcgtcaag cttttgaaaa acgccgtaac
     1021 ttagccttag atatgcttaa acaaatccca aagatcagta tttataaacc agaaggtgct
     1081 ttttatcttt ttgtaaatat acaaaaaata gaaaaagatt ctatgaaatt ttgccaaaaa
     1141 ttacttgaac aagaaaaagt tgccgttgtt ccaggtatag gttttggaat ggatggatac
     1201 tttagacttt cttatgctat aagcgatgaa tttatcaaga aaggtttaga aagaatagct
     1261 tatttcattg cgaattacaa atagttacca tgaaaagacc tttacctttt atacttgcag
     1321 ccacaaataa tggaactatg attatcaacc atctagatag acatgataca tcccaaggaa
     1381 gttatggagt tggttttcaa tttttaaact atggtagctt tgattcagag gaaattgatc
     1441 tgtgtgttaa tcttttaaaa ctacggagaa aatactacga aggctatgtt tttgcaatag
     1501 actgcggtgc aaatattggt gctcatacta ttaagtgggc tatagaaatg catgactggg
     1561 ggggtattag cctttgaagc acaagagaga cttttttatg ctttagcagg aaatatagca
     1621 ataaacaatt gttttaatgc cagagcaata catgcagcca ttggaaatcc tgaaaaaaat
     1681 caaaacgaac ttgaaatttt aatccctgat tatacccaaa aagcttcttt tggaagtcta
     1741 gaattaaaat ctcaaaacaa taatgaattt ataggacaaa tacctcaaaa aaaagaaaaa
     1801 gttccttatt taaaacttga taatttcaat tttaaaagat tagatcttat taaaatagat
     1861 gtagaaggta tggaacaaga agttatatta ggatgtttaa atcatattaa aacttttaaa
     1921 cccattttac aaattgaaat tatcaaatca aacattcaag atattatcaa tatattagaa
     1981 aatttagaat atgaaatttt tcaatctgga atcaatatct tagctattta caaagcagat
     2041 cctgtaatta atcatttacg atcttaaccc ataagccttt aaacaaaagg cttatgacta
     2101 aggcttttta agcacagcat ttaccctttg aatactatct gatttattta aactcaatct
     2161 tattatagaa ttttccaatc cacctaaaga atgcgctaca tttgcctcta ggcttatcat
     2221 atctaaagca tttaattcaa atttttcctt ttccacttca aaccaaattt taccgcttaa
     2281 aacttgaaca tgtatagcaa aaggggcttt atgctctttc atcacgctat ctttagctaa
     2341 taaaatttga atttctttac ctttttcatt atcaattaaa acattgattt tcacttcttt
     2401 tgggctaaat tccgctccat tccattgaat gattttcaca aaatctcctt ttttagtttt
     2461 acaaaactat agcaaaagcc aaaatataaa ttataaactt gtgttaattt attcttcttt
     2521 ccaccaaaaa tcctgtttaa atttagctcc tacttcataa gcctcgccca tttttggtgt
     2581 gataaggggt aaatctaaat tttcataaag aaattttacc acctcattcc atgcatgagt
     2641 tcctgctaaa aatctccccc aatgtatagg catgacagct tttgtattaa gatcttttgc
     2701 ttcttttaaa atttgctcag gaaaagagtg tgaatatggc caggcgatat taaattgtcc
     2761 gctttcaaga caagctaagt caaaatctcc aaaatactca cctatttttt taaaatgtgt
     2821 aaaataccct ccatctgcgc taaaaaacac tctcttatct acacttaaaa attccatcac
     2881 aaaagaagcc caaagggttt tgtttttacc atctcccctg cttgaactgt gttgtgcagg
     2941 tgttgcaatg atttttaaat caccaaattc tatgccgctc caccaatcaa gctctatgat
     3001 ttttttctca ctcactccat agctttttag ataatttccc acttttaaag gtgtgataaa
     3061 aaatcgtgct ttttctttta aagctttgac actcttagca tctaaatgat caaaatgcga
     3121 atgcgtgata atcacagcaa aaatttcatt aaaatcattt acattataaa taggagcatt
     3181 tttaaaagcc ttgttaataa aagaaatagg cgaagcatga gtgttaaaaa caggatcgat
     3241 caaaatttta tactctttaa aacttataaa aagcgaagaa tgtccaagcc aagtaatatg
     3301 tggggtgcta aaaccactca aatcaggctt gaaaaaaggt aacttaaaag aagggatggc
     3361 attttttgga taaagataat aatacctcaa aatttcttta aaagacactt taggagttat
     3421 aagactgtgc tcattttcat taagaaaaat ttcatatttt ttaccctgca cttttttagc
     3481 ttttgatcgt tgtgtatt
//
LOCUS       DARBBO010000120         3317 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.120, whole genome shotgun sequence.
ACCESSION   DARBBO010000120 DARBBO010000000
VERSION     DARBBO010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3317
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.120"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..679)
                     /locus_tag="SB854_001599"
     CDS             complement(<1..679)
                     /locus_tag="SB854_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SurA N-terminal domain-containing protein"
                     /protein_id="HEG0957570.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQIVSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWNEHK
                     EDYKTKKI"
     gene            838..1776
                     /gene="rsmH"
                     /locus_tag="SB854_001600"
     CDS             838..1776
                     /gene="rsmH"
                     /locus_tag="SB854_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEG0957571.1"
                     /translation="MILEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKN
                     HPDLKFIACDQDQQALEFSKKRLKDFRNRITFMQSNFSEVLEKISHKEELRGILADIG
                     VSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAH
                     FIAEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKD
                     FLEHLENLKPKNCILAIISFHSLEDRIVKQFFKKWSKNCICNEKIMRCECGNNHSLGQ
                     IITKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            1776..2714
                     /locus_tag="SB854_001601"
     CDS             1776..2714
                     /locus_tag="SB854_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957572.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHTKKSNIYLKEDLINVKLEEKQSLAKKIFSKMKER
                     RKEENKKTKKNFLFSRKKANEIKNIQTKTQIQTKSNQATTQTKQEKKGLTNSIEKIQK
                     TETKIQKPLIIEKKLDVKNQPNIKKSLENLQKKITPQENKQELPKPSNQAQEKQQNDE
                     DAQKAKNILLEGFSNATKEDRNLNFNHLLFAALLVSFALFLFAPQIYIRNQIYYLSRE
                     IATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE"
     gene            complement(2702..3193)
                     /locus_tag="SB854_001602"
     CDS             complement(2702..3193)
                     /locus_tag="SB854_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957573.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLIRDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVILLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYTRKIISKKIIQKAWALHFPYFAYEKYSTMAGEFYKEALKEEIPKANLEQYVLDKII
                     HSK"
BASE COUNT         1354 a          465 c          418 g         1080 t
ORIGIN      
        1 atattttttt agttttataa tcttctttat gttcattcca aagctttttt aaatcctctt
       61 cgttaatctt aatatttttt ttgtcataat caatttttgc aatacttaaa gcatcttgca
      121 taaaataact agaagctaac atttttaatt cctcatcttt gctaggaata ttaaaaattt
      181 gattaagttt atcggtaatt acttcatttg caagttgtgt ttcataatct tttggagtta
      241 aattattggc atttaaaagt tcataataaa ttgttttgtt aaaatcccct gtaggatctt
      301 gaaattctct agtatttgca agtttttgta aaatttcatt ctcgtttacg ccaataccca
      361 aatctttggc aaaatttaac aaaagcttat cttcaacaag agagcttaaa gctatatttt
      421 taatgcctag ttgctcagca ttttctggag ttaaagcacc attgctaatt tgattataat
      481 aacttacaat ttgtctatat ctagtatcaa attcactaaa acctatcttt tcatttccta
      541 cagttgcaac actcgaactt ctattgagat taaaatcata agcaccccaa cctaaaaagc
      601 cagcgccaac aaaagctata gtactaaccc atatagtaac aacaagatat tttttgtgat
      661 gttgcatcca agtaagcata tcattccttg attaaattta aactagatat tgtatcgtag
      721 aagtgtttaa gtggagttta attataaaat ttttaccaaa aaatatttgt tctttaaatt
      781 ttatgatttt tacaatgaaa tttagttata attatagttt ataaaaattt attaggattg
      841 attttggaaa ttcctcatat cccagttttg cttaatgaag ttcaagagat ttttaaaaat
      901 cttaaaacag gttatttttt agactgcact ttaggatttg gcggacatag tgaagctttg
      961 cttaaaaatc atcctgatct taaattcatt gcttgtgatc aagatcaaca agctttagaa
     1021 ttttctaaaa aacgccttaa agattttcgc aataggataa cttttatgca aagtaatttt
     1081 agtgaagttt tagaaaaaat ttcacataaa gaagaattaa gaggtatttt agcagacatt
     1141 ggagtttctt catttcagct tgataataac gaaagaggtt ttagtgtaaa ttctgacttt
     1201 ttggatatga gaatgaatca aaactccaaa atatcggctt atgagattat taatacttat
     1261 acaaaagagc aattaacttc catttttaaa gattatggag aattacatga tgcgcatttt
     1321 attgctgaaa aaatttgcct agaaagaagt aaaaatccaa tcaaaagtgc caaagagctt
     1381 tatcaaatca taggaaaagg taaacaaaat catagaaaaa tttccaaagc tactttagca
     1441 tttcaagcca ttagaataga agtaaatcaa gaacttaaag tgcttaaaga ttttcttgaa
     1501 catttagaaa atttaaaacc aaaaaattgc attttagcta tcattagctt tcattcttta
     1561 gaagatagaa tagtaaaaca atttttcaaa aaatggtcaa aaaactgcat ttgcaatgaa
     1621 aaaataatgc gttgcgaatg tggaaataac catagcctag gacaaataat aactaaaaaa
     1681 gctataagtg cgagcaagga agaactttta aaaaattctc gctctagttg tgctaaaatg
     1741 cgggcttttt attttaataa tttggacaat aaataatgct agaagatgat tttataaaag
     1801 aacgccaaaa catacgccaa aaaatgctga aattttctcg cgccataaat caaggcaaac
     1861 cgcttgatga tgatttaaga gatgaaattt ctagcgatga tattttaaga cgtcgtttta
     1921 aaaaaaagac tcctaataaa ttcttagaag aactcgatga agagtatgag tcaaaacata
     1981 ctaaaaaatc aaatatatat ttaaaagaag atctaatcaa tgttaaatta gaagaaaagc
     2041 aatctcttgc taaaaaaatt ttttccaaaa tgaaagaaag aagaaaagaa gaaaataaaa
     2101 aaactaaaaa aaatttttta tttagcagaa aaaaagcaaa cgaaataaaa aatatccaaa
     2161 ccaaaacaca aattcaaaca aaaagcaatc aagctaccac tcaaacaaaa caagaaaaaa
     2221 agggacttac aaattctata gaaaaaattc aaaaaacaga aactaaaata caaaaacctc
     2281 taattataga aaaaaaacta gatgttaaaa atcaacctaa tatcaagaaa agtttagaaa
     2341 atttacaaaa aaaaataaca ccacaagaaa ataaacaaga acttccaaaa ccatctaatc
     2401 aagctcaaga aaaacaacaa aatgatgaag atgctcaaaa ggcaaaaaat attttactag
     2461 aaggcttctc taatgctacc aaagaagata gaaacctaaa cttcaatcat cttctttttg
     2521 cagctttact tgttagtttt gcattatttt tatttgcccc acaaatttat attagaaatc
     2581 aaatttatta tcttagtaga gagattgcta cattaagaac agaagaaagt gttttaaacg
     2641 aggaaaataa agacttaaaa agaagacttg aaaatatgcg attccaaaat caaattttag
     2701 attatttaga atgaataatc ttatctaaaa catactgctc taaatttgct tttggaattt
     2761 cttcttttaa agcttcttta taaaattcac ccgccattgt agagtacttt tcataagcaa
     2821 aataaggaaa gtgtaaagcc caggcttttt gtattatttt ttttgagatt attttgcgag
     2881 tataaacttt aaaaatatca tatcctataa atacacaagc agtaaccata acagcgctca
     2941 ctatgcttat atgaaagtca agctttgtta aaaaataatg agtaatcaaa agcaatggca
     3001 ataaaatcac agcgcaaaaa acaccaaaat aaatataaga atttagaatt ttgaaattaa
     3061 aatttagctt agaaggatct acaagcattc catcgttaaa aagtgcattt gcctctaata
     3121 aatctcttat aagaacaggt tgctctgata ctttaaataa aaaacgaagg ctaaattctt
     3181 taaatttttt cataatccac gctttatttt ttaattaaaa ttttatccaa agaaaattaa
     3241 ttccaactaa aaaatcattt tcataaataa gcacaagtct ttaaagtttt ttagatataa
     3301 tttaaaatgt caaattt
//
LOCUS       DARBBO010000121         3266 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.121, whole genome shotgun sequence.
ACCESSION   DARBBO010000121 DARBBO010000000
VERSION     DARBBO010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3266
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.121"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            150..848
                     /locus_tag="SB854_001603"
     CDS             150..848
                     /locus_tag="SB854_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy transducer TonB"
                     /protein_id="HEG0957574.1"
                     /translation="MKTFISNHKNQSSFITLFVFTPLFFVFLYSKDFLHIQPNEIIKE
                     NKFNMAIKHFVQNSSDMKPTQPTQTIQEPSNVQPKEPVQEIKKIKPRKEKPIAKPKKI
                     IPPANAKAISQPKKDTNMQQPIMQQQTPQASSYQSVSLTSNSELLKEIKSAIDEALIY
                     PRQARKMRMSGEVLVEFTWTKEKKLENLKILKPSKYDFLNKSALETIRIASKKFPQYE
                     KTFHIKIPLVYKLS"
     gene            complement(940..1377)
                     /locus_tag="SB854_001604"
     CDS             complement(940..1377)
                     /locus_tag="SB854_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002795935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEG0957575.1"
                     /translation="MKKDSYHKITSKLIQEFDLLAVEDLQIKNMCKRAKLKNIKAKSG
                     LNKSILNTSFYQFSQYLEYKAKHNGKFFIKVNPQYTSKTCSVCGNIKKNLMFKDRVYL
                     CEKCGNTLHRDINAANNILKRGLKSFGLGISLEDYKLKAFRIS"
     gene            complement(1498..1761)
                     /locus_tag="SB854_001605"
     CDS             complement(1498..1761)
                     /locus_tag="SB854_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEG0957576.1"
                     /translation="MNTFFKMRYHRDLPNTYKFNQITIIKNHNKYYLAFSIIYDESNV
                     SLMSSKDFDIKKAVDIDLNINEITLSSGELIATNSKLLSRAEY"
     gene            complement(2190..2282)
                     /locus_tag="SB854_001606"
     CDS             complement(2190..2282)
                     /locus_tag="SB854_001606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957577.1"
                     /translation="MLETLKKYAENQGIEDNYPKKIYNQKEKKP"
BASE COUNT         1257 a          536 c          352 g         1121 t
ORIGIN      
        1 atcttttaga tacaagcttg attatttgat tgttattttt ctctgtgaaa tttgtttcaa
       61 aatttatctt tttaaacaat ttaccataga atgtgtttta agaaataaag atatttaaat
      121 caaaaaataa aatcataacg gagtaaaaga tgaaaacatt tataagcaat cataaaaacc
      181 aatcttcttt tatcacttta tttgttttta cacctttatt ttttgttttt ctttattcta
      241 aagatttttt acacatacaa cccaatgaaa ttattaaaga aaataaattt aatatggcaa
      301 tcaaacattt tgtacaaaat tcctccgata tgaaaccgac acaacccaca caaactatac
      361 aagagccttc gaatgtgcaa cccaaagaac ctgtgcaaga aataaaaaaa ataaaaccga
      421 gaaaagaaaa acctatcgct aaacctaaaa aaataatccc tccagcaaat gcaaaggcaa
      481 taagtcaacc caaaaaagat acaaacatgc agcaaccaat catgcagcaa caaactccac
      541 aagccagctc ttaccaaagc gtatctttaa ctagtaatag tgagctttta aaagaaataa
      601 aatcagcaat cgatgaagcc ctaatctacc ctagacaagc tagaaaaatg cgtatgagtg
      661 gggaggttct tgtagaattt acctggacaa aagaaaagaa attagaaaat ttaaaaatac
      721 ttaagccttc aaaatatgat tttctaaata aaagtgcttt agaaactata cgcatagctt
      781 ctaaaaaatt tccacaatat gaaaaaactt ttcatataaa aataccattg gtatataaat
      841 taagctaaat ctttcacaat atactctatt tttaatgcaa atcactccag ctttgctaac
      901 gcttagaagt agaagcttcc tagctaaagc taactagtat tagctaattc gaaaggcttt
      961 gagtttatag tcctcaaggc taattcctaa cccaaacgac tttaatccac gctttaagat
     1021 attatttgca gcattaatat ctctatgtaa agtgttgcca catttttcac aaagatacac
     1081 tctatcttta aacataagat tttttttgat atttccacat acactacaag ttttgcttgt
     1141 atattgtgga ttgactttta taaagaattt gccattatgc tttgctttat actctagata
     1201 ttgagagaat tgatagaatg aagtattaag aatagattta tttaaaccac ttttagcttt
     1261 tatattcttt aatttagctc ttttacacat attcttaatt tgcaaatctt caactgctag
     1321 caagtcaaat tcttgtatga gttttgaagt tatcttgtga taactatcct ttttgatttt
     1381 gaactttttt catagatttt atttaatttt aattgtgttt ttttgaaatt atggcttaac
     1441 tttgttttct ccttttttgt ttttaatatt ctcctgcttt gttttctttg caatctttta
     1501 atattcagct ctactaagta gctttgagtt agtagctatt aactctccac tgcttaaggt
     1561 aatctcattg atatttaaat caatgtcaac tgctttttta atatcaaaat ctttgctaga
     1621 cattaaagaa acattcgatt catcataaat gatactaaaa gctaaatagt atttattgtg
     1681 atttttgata atagtgattt gattaaactt ataagtattt ggtaaatctc tgtgataacg
     1741 cattttaaaa aatgtattca taagtctaaa tatcttaaac ttagtagtat cactatcttt
     1801 gattttgtag gcttgattat tccaattaaa gctttgcttt gcaaatttag agtttttaaa
     1861 tttgagaaag cctttgtttt tatctctaat tgcttgctct aaggcacgag aagattaatc
     1921 cttgcttgtt gggttacaac acttttatag cttaattctc ttgcttttat aaggctagtt
     1981 ttattgatta tctatcttac ttgcctttaa ataactccta tcttttttat ctaaattctt
     2041 atttttatcc cactctcttg ctgtaaattt aaacaaatat tataggcttg atatagatga
     2101 aacattgatg attaataagc ttttgttgtt ctttgtttag gtagaattct atatttaaaa
     2161 cctttggtta tttgcattgc tttgttccat tagggctttt tttctttttg gttatatatt
     2221 tttttagggt aattatcttc tatgccttga ttttctgcat attttttaag agtttctagc
     2281 attattccgc ataggtattc tataaaaaat tactgattat gtcaaatacc taactagagc
     2341 cgtacaacta acactgtaag caattcatct cccacttaag aagtgagagt tttattgaat
     2401 aaaaaaagat aaatttaaag caagtaatct ttttttagac aacactaaac ccttgcatgt
     2461 atttacagca atatttattt catcataaac aacccccaac ccataaaacc tcaataaaca
     2521 ctataaaata aaagtatttg taaagaacaa gcaaacaata aatctcaatc acccagacaa
     2581 aaacaatctc aaccgaccca taaagcaata aatcaagcaa gcataattaa tttaattgat
     2641 taaactaata aatttaattt ataagattaa caataaaaaa ccataaatta accaagctaa
     2701 tcccacccaa acccaaacaa gccataaatt acacacactt ttttacaaac atcaattaaa
     2761 tagcaagact atcgataata aaaaatttat ctcaagtata acattcattc tcgccaacaa
     2821 gaatagacaa tcatagtcta tccaccctaa cccaacatta acccctaacc caactaagaa
     2881 gtgtataaca acaccaaccc ataaacctca ataaacacta taaaataaac ttgagtgatt
     2941 aaaaatccaa cccaattatt gaacaaaccc aacctacata ataaaatata aactagacat
     3001 ataaagaaca attgacacat aaaaatagat tgaataaata aacctataca agtaaacata
     3061 aagattaatt attgatacaa aagattcaat aaataaataa aaagaataat tgagatataa
     3121 aaacatataa actaaacaac tcaaacaacc attaaatcaa cccaagctaa ttaaacctat
     3181 aaacataaaa aaataattaa atataaaaac aacgattgac gtataaaaac taagatttta
     3241 aatctataag aataagataa agtaga
//
LOCUS       DARBBO010000122         3159 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.122, whole genome shotgun sequence.
ACCESSION   DARBBO010000122 DARBBO010000000
VERSION     DARBBO010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3159
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.122"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            30..344
                     /locus_tag="SB854_001607"
     CDS             30..344
                     /locus_tag="SB854_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HEG0957578.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLDKEFSCY
                     KG"
     gene            347..1042
                     /locus_tag="SB854_001608"
     CDS             347..1042
                     /locus_tag="SB854_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957579.1"
                     /translation="MLFGFDDKREFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     LYAKNTKSLKMIFGNFLHDIMHVSFGKIQNINIKLNAYAFYFQKRKSLIFNTKISKNV
                     DFLRLLRIYLYGICFDAQILFSSYVYDKVSFQNNGKNIDQDGDLIIIDKKFAILPLCK
                     EINTHNLKIENEIHGLLNLIKENNFEKFYIVCPRNKNFTHFIEIKHFLCDLNKTMLKL
                     VPYKISNQIIRRK"
     gene            1042..1533
                     /gene="fldA"
                     /locus_tag="SB854_001609"
     CDS             1042..1533
                     /gene="fldA"
                     /locus_tag="SB854_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HEG0957580.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWVEQIKP
                     YFA"
     gene            complement(1578..2108)
                     /locus_tag="SB854_001610"
     CDS             complement(1578..2108)
                     /locus_tag="SB854_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957581.1"
                     /translation="MSKFALILSFFIALFMSACTNATFTQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLRTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFYF"
     gene            complement(2114..2824)
                     /locus_tag="SB854_001611"
     CDS             complement(2114..2824)
                     /locus_tag="SB854_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEG0957582.1"
                     /translation="MKKLSLILACSASLFAASNSEISDFYSKSIKAQFPNATVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDDELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            complement(2873..>3159)
                     /locus_tag="SB854_001612"
     CDS             complement(2873..>3159)
                     /locus_tag="SB854_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SelB C-terminal domain-containing protein"
                     /protein_id="HEG0957583.1"
                     /translation="DFLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQEC
                     LNLLKNQSLDVQSMKEYFNLSRKYAIAYLEYLDKFPQVSKEAEKRFLTNI"
BASE COUNT         1079 a          386 c          492 g         1202 t
ORIGIN      
        1 tatattttaa aaatcacaaa ggagaattta tgtcagtttt ggttattggt gcagatgaaa
       61 tcactcctat tagagctgtt ttacatgatt taggtgctaa aaaaatagaa cactgggatg
      121 cgcgtaatga aaatagagtt aatcgcaagc cgattccttg tgatacagaa tgtatagtaa
      181 tgttaacaag ctttttaaat cataatacta tgaaaaaaat caaaaatgaa gctaaaaagc
      241 gcaaaattcc attagtttgt gcaaaaagaa gtgtaagttg tgtgtattgt gaatattgta
      301 aaatttttaa tcttgataaa gaattttctt gctataaagg ttaaagatgt tatttggatt
      361 tgatgataag cgagaattta taccgcaaat ttatcgctat ttaaacaatc aagagcttat
      421 gttgactttt ttaactcaat ataatgcgag cgttgatagc gctctaaaaa ttcctctttt
      481 atatgcaaaa aataccaaga gtttaaaaat gatatttgga aattttttac atgatataat
      541 gcatgtttca tttggtaaga ttcaaaatat aaatatcaag cttaatgcat acgcttttta
      601 ctttcaaaaa agaaaaagct taatttttaa tactaaaata tctaaaaatg tcgatttttt
      661 aagactttta agaatttatc tttatggcat ttgttttgat gcgcaaattt tatttagctc
      721 ttatgtttat gataaggttt cttttcaaaa taatggaaaa aatatagatc aagatggtga
      781 tcttattata atagataaga aatttgcaat tttaccactt tgcaaagaga ttaatacaca
      841 taatttaaaa attgaaaatg aaattcatgg attattgaat ttaataaaag aaaacaattt
      901 tgaaaaattt tatattgttt gtccgcgtaa caaaaatttc acacatttta ttgaaataaa
      961 acattttttg tgtgatttaa acaaaactat gttaaaatta gttccgtata aaatatcaaa
     1021 tcaaattata aggagaaaat aatgtcagta gcagtaatct atggtagtgc tatgggaaat
     1081 acagaaggag cggctaatac aattgcttca aaacttggaa ttagcgatgt ttttaatatc
     1141 tcagatattg atgcagctaa aatgaattct tacgataaat taatttgtgg aacttcaact
     1201 tggggaagtg gtgatttaca agatgattgg gatggttttg atttttcagg gcttagtctt
     1261 ggtggaaaaa ctgtagctgt atttggtatg ggtgatagtg aaagttattc tgatactttt
     1321 tgtggcggca tgggtaaatt agctcaaaat ttaaaagatg caggtgcaaa tttggtagga
     1381 gaagtttcaa ctgatggtta tacatttgaa gcaagcgatg cggttgtaga tggtaaattt
     1441 gttggacttg ctcttgacaa tgataatcaa gaagatcaaa ctgaatcaag aattgatgct
     1501 tgggtagaac aaatcaaacc ttattttgct taataattct taaaatcaag agtttttata
     1561 ctcttgattg tcttttctta aaaataaaaa aaactcacta tttgatttat aattttattt
     1621 tctaaagata attgacagcg ttctttattt ccaagataag ctgttcttgc aagaagactt
     1681 gttttttgag aattgtgatt tttagagttg atttgtaaat taacttgcat agtatagtag
     1741 ttttctacca tccattctcc atcactttcc aaaggatcaa aatcataaaa aaatcttgct
     1801 gaagttgtga ttttttgagc ataagaatgc tttttcatat ctacaagatt gattaaaatt
     1861 tcataatctg cattctcttt tacttctttt aagcctaaat ttttaagttt taaagccaaa
     1921 tctctatcca aagtagttcg aagttgacta ggattttgaa aggaaatttt aaaactttgt
     1981 tgtttttgcg atctgataaa aatgccttca ttgcttgttt gaataaagct ttgtgtgaaa
     2041 gttgcattgg tgcaagcact cataaagagt gctataaaaa agcttaaaat taaagcaaat
     2101 ttagacatta ggtttattta ataatagttg gagtagcgct aagacctaat gagcgatatt
     2161 tttcatataa ggaaaaaact tcttttaatt ctgcatcact tacttttgga taatttttga
     2221 tatttgcatc atagtatttg tttaaaattg cgattttttc tttatcattt tttgcttttt
     2281 ttgcttcctt gtagattaga gcggattttt caaaagcaga ttttccatgt actggagtta
     2341 aaatataatt aacttgatag tttttaagtt catcatcaat ttgagctaaa tgttctctac
     2401 aataagggca ttcaggatct gaaaaaacat aaattgcagg tttattttta tctcccaaag
     2461 ctattaccat ggtttctttt tgtgctacag ctttagcatt ttttgtaaaa ttttctcttg
     2521 cttcttgaaa ttttttcatt tcatattctt gagcataaga aattcccgtt ttcaagtcga
     2581 taagatcagg ggtaataaga ctatcttttg taaaaagaat gttttcttgt ttttgtccat
     2641 ttaattcaac gcttacaata acactttcaa aacccgtatt accaaccttt tgacgatttg
     2701 atacactaac ggtagcattt ggaaattgtg ctttaatgct ttttgaataa aaatcactaa
     2761 tttctgaatt acttgcagca aacaaagatg ctgaacaggc aagaattaaa cttaattttt
     2821 tcatagttta taaatccttt aaataaatta tgtttaattc tataatgatt ttctaaatgt
     2881 ttgttaaaaa tcttttttca gcttctttgc ttacttgagg aaatttgtct aagtattcta
     2941 aataagcaat agcatatttt cttgaaagat tgaaatattc tttcatgctt tgcacatcaa
     3001 gactttgatt ttttaataaa tttaaacatt cttgcataag tttttcaaga gcttgttttt
     3061 ctataaaaag attgtgtgaa agtcttacaa ccaagccttt ttgggtaagt tttttgagta
     3121 tattatctcc gctttttcta tcaagttcta aaaaatcat
//
LOCUS       DARBBO010000123         3106 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.123, whole genome shotgun sequence.
ACCESSION   DARBBO010000123 DARBBO010000000
VERSION     DARBBO010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3106
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.123"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            9..1079
                     /gene="rlmN"
                     /locus_tag="SB854_001613"
     CDS             9..1079
                     /gene="rlmN"
                     /locus_tag="SB854_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEG0957584.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     SLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKEEKIDA
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSAGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNEGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            1076..1174
                     /locus_tag="SB854_001614"
     CDS             1076..1174
                     /locus_tag="SB854_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957585.1"
                     /translation="MTMLDIFEIIFITTVVIIGFGGIVFVVTKEKK"
     gene            complement(1188..1264)
                     /locus_tag="SB854_001615"
     tRNA            complement(1188..1264)
                     /locus_tag="SB854_001615"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1228..1230),aa:Met,seq:cat)
     gene            1400..1487
                     /locus_tag="SB854_001616"
     tRNA            1400..1487
                     /locus_tag="SB854_001616"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1434..1436,aa:Ser,seq:gga)
     gene            1534..1609
                     /locus_tag="SB854_001617"
     tRNA            1534..1609
                     /locus_tag="SB854_001617"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1567..1569,aa:Ala,seq:ggc)
     gene            1613..1688
                     /locus_tag="SB854_001618"
     tRNA            1613..1688
                     /locus_tag="SB854_001618"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1646..1648,aa:Val,seq:gac)
     gene            1864..>3106
                     /locus_tag="SB854_001619"
     CDS             1864..>3106
                     /locus_tag="SB854_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEG0957586.1"
                     /translation="MANIAKQSLQDKDIRNLKPSDKRYKKAVGNPKELYIFVYPSGQK
                     TFSIKINDKYTKLKEFREGIYSVAEARKEAIQFLKEFEKCKDIRLLKNGNDKYKFKNL
                     FILYIDQKQKKCLSDNYVKKIIQMVEKYLMPSLGNLDVKNIKYSDLLSIFNAIYNPNN
                     PYTSRLETIHRLINHVQGIFRIALKDRYIDFDPSDGLKDNFASPKRFQNNHNIDTRYP
                     ALIQSEDLKEFIQDLKQDNRMEKQTKRALYLQILSINRPFNTASVKWANIDFEKQIWT
                     IPANETKTKIAHEIPLTKTMIKVLKEQFLFSGEISDFVFPAQTIQGHINRDSIGKAIK
                     NLGGKNKWHKRASSHGFRATFRTICSQHKAELLKLNISEEVIESVLAHKELNQIKFSY
                     EREKATIIQKRKLLQWYDDYLN"
BASE COUNT         1178 a          427 c          530 g          971 t
ORIGIN      
        1 aaataatttt gaaagagctt gttaatattt tagatttttt acctgaagaa ttaggagaaa
       61 aaatcaaacc gatgtttcgc gtgaaacaaa tttatcaatg gatttatcaa aaatatgcca
      121 ataatttttc cgatatgtca agtttgccaa aagatttgcg tttagaactt gcgcaaaatt
      181 ttcatttttc tcctgtaaaa tgcgttaaaa atgagcaaag taaagatgga agtataaaat
      241 atctttttga acttatcgat ggtttaaggg tagaaagtgt gcttttgcct atgaaagaag
      301 aaaaaataga cgcagaaggc aaaagaattt ctcatgcgag atatactatc tgtgtttctt
      361 ctcaagtagg ttgtaaaagt ggatgtagtt tttgtcttac tgccaagggt ggtttgaaaa
      421 gaaatttaag tgcaggtgag atagtcggac aaattttatg gatcaaaaaa caaaacaata
      481 tcccttatga acgccgtgta aatatagtat atatgggtat gggcgagcct ttggataatc
      541 ttaaaaatgt ttctaaagcg gtaaaaattt tagcgcaaaa tgagggactt gctataagtc
      601 ctcgccgtca aaccatcagt actagcggtt tggcaaaaca aatcaaagaa ttaggtcaaa
      661 tgaatttagg tgttttactt gctatatcat tgcatgcggt taatgatgag cttcgaaccg
      721 aacttatgcc tatcaataaa gcttataata tcgctgcgat tatggatgcg gtgcgtgaat
      781 ttcctataga tcaaagaaaa agagtgatgt ttgaatatct tttaattgat ggtatcaatg
      841 ataagcttga acacgctaaa gaattagtca agcttttaaa tggcattaaa gccaaagtga
      901 atttaatact ctttaatcca catgaaggaa gtttatataa acgccctagt ttagaaaatg
      961 cgattaaatt ccaagattta ctaagtaata aaggtgtaac ttgtactata agagaaagta
     1021 aaggacttga tatctcagct gcttgtggac agcttaaaga aagggcaaaa gaacaatgac
     1081 gatgttagat attttcgaaa tcatttttat aacaactgtt gtaattatag gttttggtgg
     1141 aattgttttt gtagtaacaa aagaaaaaaa ataattatta catttaatgg tgtcaagggg
     1201 gagacttgaa ctcccgacct ccggcttatg agaccagcgc tctaaccagc tgagctaccc
     1261 tgaccaaaaa taaaaatata attatactac tttttactaa aaattttctg atttttaaaa
     1321 aaaataattt tattttcaat atttaaaaaa tttctttatt tttaaagctt ttatagatat
     1381 aatgaacgct ttatttcata gacaggtgtc cgagcggttg aaggagcacg cctggaacgc
     1441 gtgtaaagtg caagctttcg agggttcgaa tcccttcctg tctgccatca aataaacttt
     1501 aaggcaaact aagttataat acaaacttca tttggggcat tagctcagct gggagagcac
     1561 aacgctggca gcgttggggt cagcggttcg aacccgctat gctccaccat atggttccgt
     1621 agctcagctg gtagagcact accttgacat ggtagtggcc gttggttcaa gtccaatcgg
     1681 agccaccatt ttttatttct ttcgatttct ttaatttcca aaaaatgctt ttaaaatgct
     1741 atatataaac aaactaaatg atctttgatt tcaattaatt tcttttgtgt tataattatt
     1801 ttcaattaat tagggtcatt attagggttc ttaaaaccta atagggttct ttaaaggaaa
     1861 ataatggcaa acatagcaaa acaaagctta caagataaag atattagaaa tttaaaacct
     1921 agtgataaac gatacaaaaa agctgtaggt aatccaaaag agctttatat ttttgtatat
     1981 cctagtggtc aaaaaacttt tagtattaaa attaatgaca aatacacaaa acttaaagaa
     2041 tttagagaag gaatttatag tgtagctgaa gctagaaaag aagctattca gtttttaaaa
     2101 gaatttgaaa aatgtaaaga tatacggttg ctaaaaaatg gaaatgataa atataagttc
     2161 aaaaacttat ttattcttta tatagatcaa aaacaaaaaa aatgtcttag cgataactat
     2221 gttaaaaaaa ttatacaaat ggtagaaaaa tatctcatgc caagtttagg aaatttagat
     2281 gtaaaaaaca taaaatatag tgatttatta tctatattta atgctattta taatccaaat
     2341 aatccttata caagtaggtt agaaaccata caccgtttaa tcaatcatgt tcagggtatt
     2401 tttagaatag ccttaaaaga tagatatatt gattttgatc ctagtgatgg cttaaaagat
     2461 aactttgctt cccctaaaag atttcaaaac aaccataata tagatacaag ataccctgcc
     2521 ttaattcaat cagaagattt aaaagaattt attcaagatc taaagcaaga taatagaatg
     2581 gaaaaacaaa caaaaagggc tttgtattta caaattctta gtatcaatag accttttaac
     2641 actgctagtg taaaatgggc taatattgat tttgaaaaac aaatttggac tataccagca
     2701 aatgaaacaa aaacaaaaat tgcacatgaa attccactta caaaaacaat gattaaggta
     2761 ttaaaagagc aatttttatt tagcggagaa attagcgatt tcgtttttcc tgcacaaacc
     2821 atacaaggac atattaatag agatagcata ggtaaagcca ttaaaaattt aggaggtaaa
     2881 aataaatggc acaagcgagc tagttctcat ggttttagag ctacatttag aactatttgc
     2941 tctcaacata aggcagagct cttaaaatta aatattagcg aagaagttat tgaaagcgtt
     3001 ttagcacata aagaacttaa tcaaataaaa ttttcttatg aaagagaaaa agcaaccatt
     3061 attcaaaaaa gaaaactttt acaatggtat gatgattatt taaatg
//
LOCUS       DARBBO010000124         3037 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.124, whole genome shotgun sequence.
ACCESSION   DARBBO010000124 DARBBO010000000
VERSION     DARBBO010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3037)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3037)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3037
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.124"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            20..>3037
                     /locus_tag="SB854_001620"
     CDS             20..>3037
                     /locus_tag="SB854_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG0957587.1"
                     /translation="MKTVGVVIPIYNVEKYLRECLDSVVNQTYKNLQVVLVNDGSTDE
                     NSLNIAKEYTLKDERFILFDKENGGQSTARNVGIEYFSGDFCFNIINEELQVDKHQLV
                     EFSIKNNNSRAIHKIYKSSNYFANKKEAINFKNPNIDFIVFLDPDDYWTLDCIEECVK
                     RSDNMDIVWFDYQMFYDNIEEKHYKHKTNLTKSQMQIYEYYKPEKITSMQWLERCLKI
                     QADLPFWCVCVGIYSFAYLQKIKLKFLDGLIHEDVHFGMLLFAQAKHIYVFPKVLYYY
                     RIRSASTASYDKITTKANIAPYIEHLCDVFDGDVKAAKEYHAKSSIFLNAWHIREFIA
                     KEYDKEKGKLLEEAFFMFLYFWYFDFVELKHDPRRIKELFREHKPIYECNHKRYPEFD
                     FFCKYGLVRYRIQKQLSYRIGYVLTRAKIYNFYLIPFRLILEFIKFKMEKNKKKLPKL
                     DEYPDFNDVNRVKNHLSYLIGEALIKSIKQWYLGKPLILPFAWYAIYKKKKIKKSDYK
                     KQVAHKPYFILPDHTLLNISKYKKAMQSSLSIYSKFNDASRAINTDIICDYAFCTSKD
                     QWSWWMVDLLDTYFLEKIRILNVKNTFLRSSMRDIKIYVSIDNTQWTLIPQNFYIWKY
                     NNFECDVVISNRVEARYIKILLERKVLSLSKVEVFKKRKKGYIISSKPDGLGMRIASI
                     LVGMYLAKKMNFEFGFLWHNSIDLAFMGITQSCKDEKLNYLGNCMDEVDIVFGESFIE
                     QYFLPSEGLEYSHGNAIRKDKRTFEYLTDQENFEKEWGWYSTDILPNLWIEDCKESEC
                     LHEIQQIYTTINFSKQYQDILIKVQDDIAKLQAKFIALHIRGGDIIFSNIRKAPSFTP
                     VIERLFPYEIALEIAIKELDKNNNIVVFGQDLNANQELVDYLKSFKQYNHLKILDISS
                     FIDPNYTEMQRAFFEINFMSKAEKIYSAKESVFSKLAMMISGSNKLISFHDIFSKDEQ
                     LKLIIQNMNKLSLHFLQKAMSSFRLFQLSRELNL"
BASE COUNT         1119 a          328 c          489 g         1101 t
ORIGIN      
        1 gcagctagga tattaaaaaa tgaaaaccgt aggcgtagtt atcccaatct ataatgtaga
       61 aaaatattta agagaatgtt tagatagtgt tgttaatcaa acttataaaa atttacaagt
      121 tgtacttgta aatgatggta gcacagatga aaactcactc aatattgcaa aagaatatac
      181 tttaaaagat gaaagattta tactttttga taaggagaat ggaggacaaa gtaccgcaag
      241 aaatgtaggt atagaatatt tttctggtga tttttgtttt aatatcatta acgaagaact
      301 gcaagttgac aagcatcagt tggtagaatt ttctataaaa aataataatt ctcgtgctat
      361 tcacaaaatt tacaaaagtt ctaattattt tgcaaataag aaagaagcga tcaattttaa
      421 aaatccaaac attgatttta ttgtattttt agatcctgat gattattgga cattagattg
      481 cattgaagaa tgtgttaaaa gatcagataa tatggatata gtttggtttg actatcagat
      541 gttttatgat aatattgaag aaaaacatta taaacataaa acaaatttaa caaaatctca
      601 aatgcaaatt tatgaatatt ataaaccaga gaaaattaca tccatgcaat ggcttgagag
      661 atgtttaaaa attcaagccg accttccttt ttggtgtgtg tgtgtgggta tatattcttt
      721 tgcttatttg cagaaaataa aattaaaatt tttagatggc ttaattcatg aggatgtaca
      781 ttttgggatg ttgctttttg ctcaagctaa gcatatatat gtatttccaa aagttttata
      841 ttattatcgt atacgttcag cttctactgc ttcttatgat aaaataacta ctaaggctaa
      901 tattgccccc tatattgaac atttgtgtga tgtttttgat ggtgatgtta aagcagctaa
      961 agaatatcat gcaaaaagca gtattttttt aaatgcttgg catattagag aatttattgc
     1021 caaggagtat gataaagaaa aagggaaatt gctagaagag gcgtttttta tgtttttata
     1081 tttttggtat tttgattttg tggagttaaa acatgatcct agaagaatca aagagctttt
     1141 tagagagcat aagcccattt acgaatgcaa tcataaacgc tatcccgaat ttgacttttt
     1201 ttgtaaatat ggtttagtaa gatatagaat ccaaaaacaa ctttcttata gaataggtta
     1261 tgttcttact cgtgctaaaa tttataattt ttatttaatt ccttttagat tgattttaga
     1321 atttattaaa tttaaaatgg aaaaaaataa aaaaaagcta cctaaattag atgaatatcc
     1381 tgattttaat gatgtgaatc gggttaaaaa tcatctttct tatcttattg gtgaagcttt
     1441 aattaagtct ataaaacaat ggtatttagg caaacctttg attttacctt ttgcttggta
     1501 tgcgatatat aaaaaaaaga aaataaagaa gtccgactat aaaaaacaag ttgctcataa
     1561 accttatttt atccttcctg atcatacttt gcttaatatt tctaaatata aaaaagctat
     1621 gcaaagttct ttaagtattt attccaaatt taatgatgct tctagagcta taaacactga
     1681 tataatttgt gattatgctt tttgcacttc taaagatcaa tggtcttggt ggatggttga
     1741 tttacttgat acttactttt tggagaaaat tagaatttta aatgttaaga atactttttt
     1801 aagatctagt atgcgtgata tcaaaattta tgtttcaatc gataatacac aatggacact
     1861 tattcctcaa aatttttata tatggaaata taataatttt gaatgtgatg ttgttatatc
     1921 taatagagtt gaagcaagat atataaaaat acttttagaa agaaaggttc ttagtttgag
     1981 taaagttgaa gtatttaaaa aaagaaaaaa aggttatatt atatcttcta aaccagatgg
     2041 attaggtatg agaatagcta gcattttagt aggtatgtat ttagctaaaa aaatgaattt
     2101 cgaattcgga tttttgtggc ataactctat agatttggct ttcatgggga ttacacaatc
     2161 ttgcaaagat gaaaaattga attacttagg caattgtatg gatgaggttg atattgtatt
     2221 tggtgaaagt tttattgagc aatatttttt accatcagaa ggactagaat atagccatgg
     2281 taatgctata agaaaagata aaagaacttt tgagtatctg acagatcaag aaaattttga
     2341 aaaggaatgg gggtggtatt ctacagatat tttgccaaat ttatggatcg aagattgtaa
     2401 agagagtgag tgcttacatg aaatacaaca gatttatact acaattaatt tttcaaaaca
     2461 atatcaagat attttaatta aggttcaaga tgatattgcg aaattacaag ctaaatttat
     2521 tgctttgcat attagaggcg gggatattat tttttcaaac ataagaaaag ctcctagttt
     2581 tactcctgtt atagaaaggc tttttcctta tgagattgct ttagagattg ctataaaaga
     2641 attggataaa aataataata ttgtagtctt tgggcaagat ttaaatgcta atcaagaatt
     2701 ggttgattat ctaaagtctt ttaaacaata taatcattta aaaattcttg atatcagttc
     2761 atttatagat cctaattata ctgaaatgca aagagctttt tttgaaatta attttatgtc
     2821 caaagccgaa aaaatttatt cagccaaaga atcagttttc tcaaaattag caatgatgat
     2881 ttctggaagc aataagttaa tatcttttca tgatattttt tcaaaagatg agcaattgaa
     2941 attgataatt caaaatatga ataaattgtc tttacatttt ttgcaaaaag ctatgtcttc
     3001 atttcgatta tttcaacttt caagagaatt aaatttg
//
LOCUS       DARBBO010000125         2942 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.125, whole genome shotgun sequence.
ACCESSION   DARBBO010000125 DARBBO010000000
VERSION     DARBBO010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2942)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2942)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2942
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.125"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..456)
                     /locus_tag="SB854_001621"
     CDS             complement(<1..456)
                     /locus_tag="SB854_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEG0957588.1"
                     /translation="MIISAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVICKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTK"
     gene            complement(453..914)
                     /locus_tag="SB854_001622"
     CDS             complement(453..914)
                     /locus_tag="SB854_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HEG0957589.1"
                     /translation="MVARQIILLLACVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(896..1411)
                     /locus_tag="SB854_001623"
     CDS             complement(896..1411)
                     /locus_tag="SB854_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957590.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNASTIKAYYKANSWVRYADRDKFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(1402..1890)
                     /locus_tag="SB854_001624"
     CDS             complement(1402..1890)
                     /locus_tag="SB854_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HEG0957591.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIEILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKKGGKAAVAQMIEILVEKNHLKEEWNKL
                     WL"
     gene            complement(1896..2723)
                     /locus_tag="SB854_001625"
     CDS             complement(1896..2723)
                     /locus_tag="SB854_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HEG0957592.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(2683..>2942)
                     /locus_tag="SB854_001626"
     CDS             complement(2683..>2942)
                     /locus_tag="SB854_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEG0957593.1"
                     /translation="AFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISV
                     DEIREFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
BASE COUNT          968 a          540 c          338 g         1096 t
ORIGIN      
        1 tttggtaaaa acttttaaaa ttttttgatc aggtcgtaaa aatcttttca aatagtcatt
       61 taaatttaca tcgatctcta aatgagtatg tcttgagtcg attaaatgta taaataactt
      121 tatcgaggtt cttaatttta aaaattcatc taagttttga ttccatattt cttttaaatt
      181 tttagaaacc tttgcataac caaaccctgg caaatcgata aaattgatat taaatttttc
      241 ttcatttctt ttgcaaatta cttcgaaaaa atttataagc tgagtttttc caggagttgc
      301 cgaacttttg gctaaatttt tttgtttaca caaagaattg attaaagaac tttttccgac
      361 attagaacgc cccaaaaatg ctacttcact aaaatttgag ctcaaattct catcaaattt
      421 cactaaagaa gtgataaatt tagcactaat tatcatttgt ctttaagatc aaacacaaaa
      481 cgagcaggtt tttgatcctt gctctctact cgataaatat tagcttttct atcgactatt
      541 attttatcac caaaaagttt ttgattgctt ccaagctcat ttatataagc atgaccatta
      601 atctcgtaag tatctttaat aacattataa ataaatttat ctccactacc tttataagtt
      661 ttacctttta aaacaatctt aaacctagca ttttgcattg cttcataacg aataggtttg
      721 cgatttttat ccgtataaat aatcaatttt tcagaattta aaatatcatc acctctaatt
      781 acttctacat ttccactaag aatactttca cccttatttt catctgagta aaaatttaaa
      841 gcttttactt caatttgagt tgcccaagtt acacttacac aagctaacaa taaaattatt
      901 tgtcttgcaa ccacgcattt actccttgga tatttaaaat tttgtttttt acatcatagt
      961 ttaaagtatt tccgttaata atacttccat tgatcagagc tttaaaatta gtatttgtgt
     1021 gtaaaatttt atccttaggt tggtattcta cctcttgaga aataattttg acattattag
     1081 aacctatata agtaacattt ccttcaaaca aaaccttgct catatcttta ttgaaaaact
     1141 ctaaacgatt cgcactaaga ttaaaatcta aatttaaagt aataaaatca ttaaatttat
     1201 ctctatctgc atatctcacc caagaatttg ccttataata tgccttaatt gtactagcat
     1261 tactctcata agctttcaaa tttttagcct caatattttt aaaatttaaa gcattagttt
     1321 gcaaattcaa agaatacgga tcttgcaaac ttaaaatcgt aaaagtaatt gtaaaaagag
     1381 caattaaaat tccaaaaatt tttatagcca aagcttattc cattcttctt ttagatgatt
     1441 tttttctact aaaatttcta tcatctgtgc tacagcagcc ttaccacctt ttttgctaag
     1501 cactatgtct acatttaaat ctttatgacc atcttttggc ttaaaactaa gtcctacact
     1561 ttcaagtaaa gccttatcat taaaataatc cccaatagcc gcacactgag aaaaatctaa
     1621 attaagtttt tgtaaaattt cttttgcaca agctaactta tctttgatac cttgatataa
     1681 aatttctatt tttaaatctt tagctctttt ttcaacacaa ggacaatttc tacctgtaat
     1741 aatagcaatt tttttaccaa gctttagcca agcctcgata gccgctccat cttttacatc
     1801 aaattcttta ataaattctc cattagaagt ataaataatt tttccatcag ttaaacagcc
     1861 atctacatcc aaaaaaatca attctgtcat aatttctact ctcttacaac aaatgcacct
     1921 gcaaatgcac cacttgcagc aaaatccctt gcttcatctt cacttctaaa gcctgttaag
     1981 aaaacgcgat ttaacccatc cactgagctt gtgcgtatag tagagctata agttctgtaa
     2041 gttttatatc ttgctgctat cgtttgtgct ccagctggat ttttaaaggc tccaatttga
     2101 accatgaaat ttccaccttc ataaatttgt ccattatttg caatctctcc actatttcca
     2161 tagtttacat tagaatgcac aatattatta cccgaattac ttgatccaaa ccctataacc
     2221 tcaagcctta ctggagctgt tcctgaagca atcatatcaa tttgactggc agctcctttt
     2281 gataaatcta taatacgatt atttacaaaa ggacccctat cattcacacg aacggtaact
     2341 tgacgattat tatttagatt ggttactttt aagatggtat tcataggtaa agttttatga
     2401 gccgcggtta aagcattttg attataggtt tcgccattag aagttttttt accgtgaaag
     2461 cctggcccat accaactcgc aataccatca gcagtttcgc ctactgctac aacagtagga
     2521 taataagttt taccgttgat agtataaggc ttcatcgttc ctttagtccc tgaagaacta
     2581 ggactgcttt taaaatcgtt tgaaggataa tacacttgag cattatccaa gctagaaaaa
     2641 aaactagtgc ctaaacaacc actaaaaaat aaagccccta gactaacggc tgacaacttt
     2701 agtgtaattg tttttatttg catttttatt ctccttgatt ggtataatta atttttgatt
     2761 aatgctaaga tgattttttg ctattttatt gaattctcga atttcatcaa cacttatatt
     2821 ataatttttt gctattttat ataaagagtc accagactta acggtataag ttcttgtcat
     2881 aggtatagtt gtatcaacct ttgcaagttt ttctgcttta aaatttttat caaaaaatgc
     2941 ta
//
LOCUS       DARBBO010000126         2803 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.126, whole genome shotgun sequence.
ACCESSION   DARBBO010000126 DARBBO010000000
VERSION     DARBBO010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2803)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2803)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2803
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.126"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            62..1267
                     /locus_tag="SB854_001627"
     CDS             62..1267
                     /locus_tag="SB854_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HEG0957594.1"
                     /translation="MKNLLIIGAGGVSRVATVKCAMNSDTFSKITLASRTKSKCDEIA
                     AFIKERLGVQIETAQIDADDSNAVVELIKKTEAQILLNVALPYQDLSLMDACIKAGID
                     YIDTANYEHPDLAKFEYKEQWARNDEFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVI
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(1280..1970)
                     /locus_tag="SB854_001628"
                     /pseudo
     CDS             complement(1280..1970)
                     /locus_tag="SB854_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881173.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
     gene            complement(2039..2701)
                     /gene="sodB"
                     /locus_tag="SB854_001629"
     CDS             complement(2039..2701)
                     /gene="sodB"
                     /locus_tag="SB854_001629"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HEG0957595.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT          958 a          435 c          474 g          936 t
ORIGIN      
        1 ttgatattat caatttttag tttaaatttg ataaaatcaa aaaaattttt gaaggatagg
       61 aatgaaaaat cttttaatca taggcgcagg tggggtaagt cgtgtggcta ctgtaaaatg
      121 cgcaatgaat tctgatactt ttagtaaaat cactttagct agtagaacaa aaagcaaatg
      181 tgatgaaatc gctgctttta tcaaagagcg tttaggggtt caaattgaaa cggcgcaaat
      241 tgatgctgat gatagcaatg cagttgtaga acttatcaag aaaacagaag cacaaatttt
      301 actcaatgtg gctttgcctt atcaagattt gagtttaatg gatgcttgta taaaagcagg
      361 gattgattat atagatacgg caaattatga acatcctgat ttagctaaat ttgaatacaa
      421 agagcaatgg gcgagaaatg atgagtttaa acaagcagga attttaggac ttttaggaag
      481 tggatttgat cctggtgtaa ctaatgtttt ttgtgcttat gcacagcaaa atttatttga
      541 tgaaatttct tatatagata ttttagattg caatgcaggt gatcatggct atgcttttgc
      601 gacgaatttt aaccctgaaa tcaatctgcg tgaggtttct gctaaagggc gttattggga
      661 aaatggcaag tggatagaaa cgcagcctat ggaaataaaa atggagtggg attatccaga
      721 agtaggagtg aaagatagct atttgcttta tcatgaagaa cttgaaagct tggtaaaaaa
      781 tatcaaaggt ttaaaaagaa tacgcttttt tatgactttt ggacaaagtt atttaactca
      841 catgaaatgt cttgaaaatg ttggaatgct agggattaaa cctgtgatac accaaggtaa
      901 agaaatcatt cctatagaat ttttaaaaac cttgcttcct gatcctgcaa gtttaggacc
      961 acgcactaaa ggttatacca atataggttg cgtgattcgt ggtaaaaaag atggaaaaga
     1021 caaacaagtt tatatttata atgtttgcaa tcatgaagaa tgttacaaag aaactggcgc
     1081 gcaagctgtg agctatacta caggtgttcc tgctatgata ggtacgaaat taatcgctaa
     1141 aggaatttgg caaggaaaag gcgtgtttaa tatggaagaa tttgacgcta agccttttat
     1201 ggaagagctg aattctcaag gacttccttg gaagattatc gaaatgactc caagcttagg
     1261 agagtaagtg ctagagcact tacttttgtc ctatataaat aaagtgctcc acactgcctt
     1321 caaaattata cagattaatt aattcataat ctccccaaaa taaaggttta aaaggtttaa
     1381 aatcttcttt taattcttct atgtctttag taaagcgtat atatgaagaa ccactcaatc
     1441 taccacttgg acatcctttt acttcacgca agctattatc cataagttct cctctttcat
     1501 acatactata gcctttatcg ctcatcatgg ttgcaaatat aatagctcct tcattgcata
     1561 gttcataaaa ttcttgcaca gcttctttaa aagcttgttt tgtaagataa tataagcttt
     1621 gatttgcaaa tataaaatcc atttttgtat tgaagagttt tttaaagcta gaattaggag
     1681 atatgatgtg aaaattttta gaatctaagc aaggatcttt ttcccaaact ttttttaaac
     1741 taggaactat atcaatgcca taaggctcta tacccccccc cggttatatt tttaaaatac
     1801 ttagaatgca ctccatttcc acaaccaaaa tcaagtaatt ttccacttgt tttgcttagt
     1861 ttgtatttta agattctctc gtaaaatctt ataacatgac catcaggata ttgaagtcca
     1921 taaccttctt tgtcatattt ttgagtatat gcagataaag aattatccat ttttgcccct
     1981 ttttgtgtag aatgttgact taatgtcaaa atccattcta gcacaaaaag gattaaagtt
     2041 attttacagg gtgaagttca tttgcataaa agctaactga tcccatgcct tcttttaaag
     2101 cccattcgta agcttttgca acaaattccc agttaatatg agcatagaat ttttctaaat
     2161 aagcagggcg tgcattgcga tgatctacat aataagcatg ttcccaaaca tctacaacaa
     2221 gtaaaggaac tttatcttca gtaattggtg tagctgcgtt tgaagtacct acaaattcta
     2281 gtttttgatt tttagtatta taaactaacc aaaaccatcc tgaaccaaaa actcctgtag
     2341 cgcctttgat aaattcagct ttgaaatttt ctaaagatcc aaattctttt tctagtgccg
     2401 cttgtaaatt agcatctata ctttgacatg aaccgccaca gccacagcct gtacttggct
     2461 taatgcaatc aaaataaaaa tcatgattat aaacttgagc tgcgttatta aatacgcccc
     2521 catttgaagt tttgataata cttacaagat ctttacctgc aaattcagta tctttaataa
     2581 gattatttag atttgtaaca taagtattgt gatgttttcc atgatgatag ctaaaagttt
     2641 cagcactcaa aaaatcacca aaagcattgg tatcataagg taattttctt aattcaaaca
     2701 taatttctcc tttattttta gtttgatatt gaaaatatta ccataataat attaaaaaga
     2761 gtaaaaatat cttaaaagct tagtgggtaa aatttctatt tat
//
LOCUS       DARBBO010000127         2612 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.127, whole genome shotgun sequence.
ACCESSION   DARBBO010000127 DARBBO010000000
VERSION     DARBBO010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2612
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.127"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..1159)
                     /locus_tag="SB854_001630"
     CDS             complement(<1..1159)
                     /locus_tag="SB854_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG0957596.1"
                     /translation="MRTYFSKIGFVLTVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFVLSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFLHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGVGIVFISLMSLFNQLGALGYIFAFCFFLALFFAGITSAVSMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSNF"
     gene            complement(1172..2506)
                     /locus_tag="SB854_001631"
     CDS             complement(1172..2506)
                     /locus_tag="SB854_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEG0957597.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMVGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFISEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFIMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFTFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSVSSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFKPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
BASE COUNT         1178 a          472 c          285 g          677 t
ORIGIN      
        1 aaaaatttga agttaattta tctaataaag taaaaaaatc tttaccaaaa aaactaaaca
       61 tagaaaaaaa atttaaattt aatgacaaga tacaacaaat tccaaaaaca aaaacaaata
      121 aacctattaa aaatagagct ttaacacgag aaatttgata gttattaatc atataaaaag
      181 ttaaaggctc tatcattgaa acagctgaag taataccagc aaaaaaaagt gctaagaaaa
      241 aacaaaatgc aaaaatatag cctaaagctc caagttgatt aaacaaactc atcaaggata
      301 taaaaacaat tcctactcct tgagtatgcg gatcggctcc aaattcaaag ataaaagtaa
      361 aaacaataag tcccatgata aaagaaatca ataaattaat caaaacaata tacactgaac
      421 tttttataaa atttgttttt ttatccaagg ccgatgaata tgtaactata caacctattc
      481 ccaagcataa ggtaaaaaat gcgagcccta aagcttcggc aatagagctg aatttaaaat
      541 gtaaaaaatc gggataaaat aaataagaaa aagcatttgc aaaaccttgc ttaaatccca
      601 tgcaataaaa caacataaaa acaagcatta aaaataagct aggcattata acaacgttta
      661 atttttcaat ccctttgatt aaacctttag atactatcaa taaagtaaga aaaaaagata
      721 aagtgaagaa aaaaacagaa cttgtcaaat ttgtagtaat taaattctga aaattacttg
      781 ctgcttcatc taaagtttta ggaagataat aaagactcac tacagtatat tttaaaaccc
      841 atcccatgat aactagataa aaagagagga caaaaatacc acctaacata aaaacgccgc
      901 catatcgcca tctattgcca tattttatgg caagatttga ataagcattt gcaagatcac
      961 ttttacttaa acgtcccata gccacttcag ccaaaaaaat actaaatcct atagttaaag
     1021 taaaaaacaa atataaaagc acaaaaacaa aaccaccatt ttctgcgctt aaagttggaa
     1081 atttccaagc attacctaaa ccaacggctc caccagcaac agtcaataca aaaccgattt
     1141 ttgaaaaata tgttctcatt atttttcaag ctcactttaa aaaagcggct atcataacta
     1201 taacaacagc caaaggggaa ataaatctca aaaacacata ccaaagttca aaaaatatac
     1261 ccctcatata aggtttaaat aaaattttta aagcttcttt tttcatcaca aatcccacaa
     1321 aaatagctgc caaaattcca cctaaaggca taataacctt gcttgaaaca ctatcaagca
     1381 aatcaaaaaa actcattcca aaaaatccaa actgagtact ttttaaagaa gataaaatac
     1441 acaacattcc taaaatataa acaacaattc ctattaaaat caaagctttt ttacggctca
     1501 taccaaaagt attaataagg taaaaagtga aaggctctat cattgaaaca gctgaagtaa
     1561 taccagcaaa gattaaagaa ataaaaaacg ctgctccaaa aatacaacca atcactccaa
     1621 ttttttcaaa taaagtagct aaggaaataa aaacaagtcc tggtccttgc tgattaggat
     1681 tgtaaccaaa ctcaaagata aaagtaaaaa caaccaaacc cattaataaa ccaactaaaa
     1741 gattgataaa aataatattt aaagtactgg taataaaatt ggttttatca ggcagactag
     1801 cagaataagt aataatcgtt ccaacgccca aagaaagact aaaaaaagca agtcctaagg
     1861 cttcaagaac atttgaagtg ttgattttgg aaaaatcagg tacaaaaaga aatttaaccg
     1921 ccattataaa accatctttg ctaatagcat aaacaagcat caaaataagc aaaataaaca
     1981 atgaaggcat catccaaaca tttaactttt caatcccatt cttaacacct ttagaaacaa
     2041 tataaaaaac acataaaaaa accaaagtaa aacaaataaa ctgacttaaa aaatcctcac
     2101 ttataaaaaa tccaaactgt gctttactta cttctagatc cataggcaaa tttccagtga
     2161 tacttaaaaa cacatattta actatccagc caatcaccaa ggtataaaaa gaaactatta
     2221 aaatcgcccc caccatagta aaaccaacat aagaccaagc ttttttattt gaaggtgcta
     2281 acttttcata ggcattaacc ggatcttttt cactaatttt tcctatgcta agctcagcta
     2341 aaaatatcac aaaacctaca cctaaagtaa gaattatata aagcaagata aaagcagatc
     2401 caccactttg acctactagt gttggaaatt tccaagcatt acccaagccc accgctgaac
     2461 ctgctaccgc taaaatgaaa cctatttttg aaaatttaga actcaatgtt acaaccttga
     2521 cttaaaaatt attttaaaat attattaaag caaaaaaact tttaagcttt attgaaaaca
     2581 atcaaattta aatcaaaaat gtgaattttt gt
//
LOCUS       DARBBO010000128         2599 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.128, whole genome shotgun sequence.
ACCESSION   DARBBO010000128 DARBBO010000000
VERSION     DARBBO010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2599)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2599)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2599
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.128"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            14..428
                     /locus_tag="SB854_001632"
                     /pseudo
     CDS             14..428
                     /locus_tag="SB854_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853469.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            424..1233
                     /locus_tag="SB854_001633"
     CDS             424..1233
                     /locus_tag="SB854_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0957598.1"
                     /translation="MSFNITSNLVGITLGLILAESISNYFGNWRDSLSFYAWINLILL
                     ILWLFVGKDENKKEEKKNNAKDLIYALKSRVAWGMIIFYIGPILFLNSLFTFLPTFYA
                     QYASFSKELADFAKKEIPALANFAIIFGPYLGLFFKRKNISFKIMLLSGGACIFICGF
                     CMLFLQNLVLIQIFAVLSGIFYSMWFPFFFNLPSELKNSNPNQTAYIMSAFWSITFVI
                     LSFNLWVVSWSVDKTHSFTLGFVYIFALIFISAILAQFVLPRRENFIQGEK"
     gene            1235..2386
                     /locus_tag="SB854_001634"
     CDS             1235..2386
                     /locus_tag="SB854_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEG0957599.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELCTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSDKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHTTSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GLAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLALKYLK"
     gene            complement(2390..>2599)
                     /locus_tag="SB854_001635"
     CDS             complement(2390..>2599)
                     /locus_tag="SB854_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide stress protein YaaA"
                     /protein_id="HEG0957600.1"
                     /translation="KKFYTYKFVKNGKVISHFAKAYRGILLCISAKNQVKNNKELLAN
                     LPSNLKLKEIQIKGLKEEIVLEILD"
BASE COUNT          819 a          306 c          480 g          994 t
ORIGIN      
        1 aaaggatttt aatatggaaa aatcactttt atttcatttt agacgcattg gagttgaatt
       61 tatcattttt agtgtttatg ctgtttttag tatctcttgg gcagcaacag ggtctttaat
      121 gcctttgatt tcaaatgatc ttgccctaaa tactcagcaa gctactttaa tcactagtat
      181 gatagtagtt gcgaaaattt ttggtgcttc atttactgct tttttggttt ataaattcgg
      241 attaaaaaag ggatattttt taggctgtat tttaatgagt tcgggtatct ttttaagttt
      301 tgtagatagt tatagtggta ttttgattat aagattttta acagggcttg gttcagcttg
      361 tgctttagtt tgcttagtgc ctattgcaca gcaatggttt gaaaaaaagc tttgcatttt
      421 gtaattagtt ttaatataac ttcaaattta gtaggcatta ctctaggact tattttagct
      481 gaaagcatct caaattattt tggaaattgg agagattctt tatcatttta tgcttggatt
      541 aatttgattt tattgatttt gtggcttttt gtaggtaaag atgagaataa aaaagaagaa
      601 aaaaagaata atgcaaaaga tcttatttat gctttaaaat ctcgtgttgc ttggggtatg
      661 attatttttt acatagggcc tattttattt ttaaattctc tttttacttt tttaccaact
      721 ttttatgcac aatatgcgag ttttagtaaa gaattagctg attttgctaa aaaagaaatt
      781 ccagctttgg ctaattttgc tattattttt ggtccttatc ttggattatt ttttaaaaga
      841 aaaaatattt cttttaaaat aatgctattg tctggaggag cgtgtatttt tatatgcgga
      901 ttttgtatgt tatttttaca aaatttagta ttgatacaga tttttgctgt gttatcaggc
      961 attttttatt ctatgtggtt tccatttttc tttaatctac cttcagaact aaaaaattcc
     1021 aatccaaatc aaactgctta tattatgagt gctttttgga gtattacctt tgttatacta
     1081 tcatttaacc tatgggtagt atcttggagt gttgataaaa cccatagttt tactttgggt
     1141 tttgtttata tttttgcttt gatttttatt tcagcgatct tagcacaatt tgttttacct
     1201 agaagagaaa attttataca aggagaaaaa tagaatgaat ttaattccag aaatactaga
     1261 cttacaaggc gaatttgaaa aaattcgtca tcaaattcat gaaaatcctg agcttggttt
     1321 tgatgaatta tgtactgcaa aattagtggc gcaaaaatta aaagaatttg gttatgaggt
     1381 ttatgaggaa ataggaaaaa caggcgttgt gggggtttta aaaaagggga atagcgataa
     1441 aaaaatagga cttcgtgcag atatggatgc tttgcctttg caagaatgca caaatttgcc
     1501 ttataaaagc aaaaaagaaa atgtaatgca tgcttgcggt catgatggac atactacttc
     1561 tttattgctt gctgcaaagt atttagcaag tcagaatttt aatggcactc taaatcttta
     1621 ttttcaacct gctgaagagg gtttgggtgg tgctaaggca atgatagaag atggattgtt
     1681 tgaaaaattt gatagtgatt atgtttttgg atggcacaat atgccttttg gtagcgataa
     1741 gaaattttat cttaaaaaag gtgcgatgat ggcttcttcg gatagttata gcattgaagt
     1801 tattggaaga ggtggtcatg gaagtgctcc agaaaaggca aaagatccta tttatgctgc
     1861 ttctttactt gttgtggctt tacaaagcat agtatctcgc aatgttgatc cccaaaattc
     1921 agcagttgta agcataggag cttttaatgc aggacatgct tttaatatca ttccagatat
     1981 tgcaacgatt aaaatgagtg ttagagcatt agataatgaa actagaaagc taactgaaga
     2041 aaaaatttat aaaatttgta aaggtcttgc acaggctaat gatatagaga ttaaaatcaa
     2101 taaaaatgtt gttgcaccag tgactatgaa taacgatgaa gctgtggatt ttgctagtga
     2161 ggttgcaaaa gaattatttg gcgaaaaaaa ttgtgaattt aatcatcgtc ctttaatggc
     2221 aagtgaggat tttggatttt tttgcgaaat gaaaaaatgt gcctatgctt ttttagaaaa
     2281 tgaaaacgac atttatttac ataattctag ttatgttttt aatgataagc ttttagctag
     2341 ggctgcaagt tattatgcga agctagcttt aaaatactta aaataaaaac taatctagaa
     2401 tttcaagcac aatttcttcc tttaaacctt tgatttgaat ttctttgagt tttaggtttg
     2461 aaggaaggtt tgctaaaagc tctttattgt tttttacttg gttttttgca cttatgcaga
     2521 gtaaaattcc cctataagct ttagcaaaat gactgatgac tttaccattt tttacaaatt
     2581 tataagtata aaatttctt
//
LOCUS       DARBBO010000129         2563 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.129, whole genome shotgun sequence.
ACCESSION   DARBBO010000129 DARBBO010000000
VERSION     DARBBO010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.129"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..734
                     /locus_tag="SB854_001636"
     CDS             <1..734
                     /locus_tag="SB854_001636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957601.1"
                     /translation="LVLSSNLLANNFSQKKVIKIEKSADSFEVIDLNQNVANPNLNQQ
                     KALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDKEFSTLFAKNLIQ
                     SLKLNWVNSAANGIYQSPKTLSYFSPKDAKLINVSPFLTQEKDKAKMYAKFTDYVVVV
                     NLQDFYVNITNYFITTSKEGVANVNFKIISTSNGKILVAKNAKLNLTLKNQDAKQNYQ
                     DIINQMPKMLADVIKNQIFHLKLLN"
     gene            complement(738..2492)
                     /locus_tag="SB854_001637"
     CDS             complement(738..2492)
                     /locus_tag="SB854_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957602.1"
                     /translation="MFDKIHYYYFNANYEKCLNLSEQFLKESPKFALEFATLSSYKLS
                     LFQKALYYAQELFSLNPTSFNGLMLAKSYIENLRLDEALNLLQTLLTRKDDLEDELKL
                     ELAFIYKLSNKLEESEQIFKELLSKDMYNLNLWKNYAEIYFKHDFTKALNAHEHLCHF
                     MQDLIDKLQKGIIAEQTNLNLVKLEDRLHSKTKENLTISKIKDFLTHQILPQKAYLLF
                     KLFRISDSLELFQSLQEANQHHAQFWQNYAKVLEFNSNYQEAYHAYKKCLSLDSHATY
                     QFDLAYLLMRMGVDDNFEEGKKYYESRLFYAHNETFSTYHYNESLKAFNKFGVDAFKN
                     KEVLVFCEQGFGDTIMYARCLEKLCKIASKVLFAPQSAMYEMFKNQIKFLNQNDDIFK
                     NVKVLKNLPTNFDYAIPICSLPFFIDIKLDEILRLKTPILPQKKPHNQRKKLGIFYAT
                     PNAENSDLLRNVKFEFLFDVLKDLDYEIISFQMQLKEELPKVIEDRSKLIKNWNDTLN
                     YLYDIDCMLSIDSAIAHLSLAMDIPTIVLLHPRFDWRWGKFENPKSYFWPKAKCFIIK
                     EQEETKRNLQKLIKDILN"
BASE COUNT          951 a          343 c          335 g          934 t
ORIGIN      
        1 gtttagtttt aagttctaat cttttagcga ataatttttc tcagaaaaaa gttattaaaa
       61 ttgaaaaaag cgcagatagt tttgaagtaa tagatctaaa tcaaaatgtt gcaaatccaa
      121 atctaaatca acaaaaagca ttgtttgata gttctacctt gattgaaaaa aaatcgcaaa
      181 tcaccaaaga taaagatatt gattttgcta ttgtattaac ttctaggaaa aattttggtt
      241 attttttaga tggttttagg gtgagtgata aggaattttc tacattattt gctaaaaatt
      301 tgattcaaag tttaaagctt aattgggtta attctgctgc aaatggtatt tatcaaagtc
      361 ctaaaacttt gtcatatttt agccctaagg atgcaaaact tataaatgta agtccttttt
      421 taacacaaga aaaagataag gctaaaatgt atgccaaatt tacagattat gttgtggtgg
      481 taaatttgca agatttttat gtaaatatta caaattattt tatcacaact agtaaagagg
      541 gtgtggctaa tgttaatttt aaaatcattt ctacaagcaa tggaaaaatt cttgtagcaa
      601 aaaatgcaaa attaaatttg acattaaaaa atcaagatgc aaagcaaaat tatcaagata
      661 ttataaacca aatgccaaaa atgctagctg atgttatcaa aaaccaaatt ttccacctaa
      721 agctcttaaa ctaagcttta gtttaaaata tctttaatca gtttttgcaa atttcttttt
      781 gtttcttctt gttcttttat gataaaacat tttgcttttg gccaaaaata acttttagga
      841 ttttcaaatt ttccccaacg ccaatcaaac ctaggatgta aaagaactat agtaggaata
      901 tccatagcta aacttaaatg cgctatagca ctatcaatac taagcataca gtcaatatca
      961 tataaataat ttagagtatc attccaattt tttataagct tgcttctatc ttctattacc
     1021 ttaggcaatt cttcttttaa ttgcatttga aaagaaatga tctcataatc taagtctttt
     1081 aatacatcaa ataaaaattc aaattttaca tttcttaata aatcagaatt ttcagcatta
     1141 ggagtagcat aaaaaatacc aagttttttt ctttgattat gcggtttttt ctgtggcaat
     1201 ataggtgttt ttaatcgtaa aatctcatca agcttaatat caataaaaaa aggcaaagaa
     1261 caaataggaa tagcataatc aaaatttgta ggtagatttt ttaaaacctt tacattttta
     1321 aaaatatcat cattttgatt taaaaatttg atttgatttt taaacatttc atacatggca
     1381 ctttgaggag caaataaaac ctttgaagcg attttgcaaa gtttttctaa gcatcttgca
     1441 tacattatag tatcgccaaa gccttgctcg caaaatacta aaacttcttt atttttaaaa
     1501 gcatcaacgc caaatttatt aaaagctttt aggctttcat tataatgata agtagaaaaa
     1561 gtttcattat gagcataaaa taatctgctt tcataatatt tcttgccctc ttcaaaatta
     1621 tcatccactc ccatacgcat caaaagataa gccaaatcaa attgataggt tgcatgagaa
     1681 tccaagctaa gacatttttt ataagcatga taagcttctt gatagtttga gttaaattct
     1741 aataccttag catagttttg ccaaaactgt gcatggtgtt gattggcttc ttgtagtgat
     1801 tgaaaaagtt ctaaagaatc agatattcta aaaagcttaa aaagcaagta tgctttttgg
     1861 ggtaaaattt gatgagttaa aaaatctttt attttagaaa tggtaagatt ttctttggtt
     1921 ttactatgaa gcctatcttc gagtttgact aaattaagat tggtttgttc agcaatgatt
     1981 cctttttgta gtttatcaat caaatcttgc ataaaatgac acaagtgctc atgtgcattt
     2041 aatgccttag taaaatcatg tttaaaataa atttctgcat aatttttcca tagattaaga
     2101 ttatacatat ctttagaaag caattctttg aaaatttgtt cagattcttc tagtttatta
     2161 ctcagtttat aaataaaagc caattctaac ttaagttcat cctctaaatc atctttgcga
     2221 gttaaaagtg tttgtaataa attcaaggct tcatcaagtc ttaaattttc aatatagctt
     2281 ttagcaagca taagaccatt aaaacttgta ggatttaaag aaaaaagctc ttgagcataa
     2341 tataaagctt tttgaaaaag agaaagttta taagaagaaa gcgtagcaaa ttctaaagca
     2401 aattttggac tttcttttaa aaattgctca ctcaagttca aacatttttc ataattagca
     2461 ttaaaataat aataatgaat tttatcaaac atatttttcc ttgatggtta cattaaatcc
     2521 aatattatct tataagttgc ataaaaagat aattatattt tta
//
LOCUS       DARBBO010000130         2477 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.130, whole genome shotgun sequence.
ACCESSION   DARBBO010000130 DARBBO010000000
VERSION     DARBBO010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2477
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.130"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..454
                     /locus_tag="SB854_001638"
     CDS             <1..454
                     /locus_tag="SB854_001638"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEG0957603.1"
                     /translation="FRHILNKNYKLFVPFMQDKSLKIVKLRLPFIKKRFGVLEPIDSF
                     FKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFVQSIDALSQNNLTQ
                     KHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCKKNQ"
     gene            375..1928
                     /gene="rny"
                     /locus_tag="SB854_001639"
     CDS             375..1928
                     /gene="rny"
                     /locus_tag="SB854_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEG0957604.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQKYIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            1937..>2477
                     /locus_tag="SB854_001640"
     CDS             1937..>2477
                     /locus_tag="SB854_001640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEG0957605.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CIALAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMVKYNFIKFFIINTLASLAWAIVLGFTAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLS"
BASE COUNT          943 a          339 c          434 g          761 t
ORIGIN      
        1 atttcgccat attcttaata aaaattacaa actttttgtt ccatttatgc aagataaaag
       61 tttaaaaatt gtaaaattaa gattgccttt tattaaaaaa aggtttgggg ttttagagcc
      121 tatagattct ttttttaaag caaaaattga tttagctatt gtgcctgtaa ttggcgtcga
      181 taaaaattta aaaagaatag gacatgggca aggtttttat gatagatttt ttgaaaattt
      241 aaattacaaa cctcatataa tatttgtcca aagtatagat gctttaagtc aaaataatct
      301 aacacaaaag catgatattt caggaaaatt atacataaac ccttataaaa aatattacaa
      361 gaaagaaaga aaaaatgata gaatcactta tcgcacttat agccgctata gtcggactcg
      421 gtataggata tttagttgca aaaaaaatca atgatgccaa atatgaaatt ttcgtagaac
      481 aagccaaagc taaagccaaa gctatagaat acgaagcgga gcttatttta aaagatgcaa
      541 aaaattcaat tcttaatgca gaattagaag ttaaaaaaaa atacgaagaa aaaactcaca
      601 aaattcaaaa agattttaat caaaaatttg atgatctttc taaaaaagaa caaaaacttc
      661 agcaagaaga agaaaaacta aaagaagata aagaatacct ttgcaagtca caaaaataca
      721 ttcaaaactt acaatctgat gttgataaat taaaaaataa atatcaagaa aaacttgacg
      781 atgttttaaa aattttagaa cattcgacag gacttacaca aaatgaagcc aaagaaatca
      841 ttcttaaaaa agtagaagaa aattctcgcg agcaaattgc acatatagta agaaaatatg
      901 aagaagaagc aaaaaatgaa gctaaaagaa aagctaattt catcattgct caagctactt
      961 ctcgttttgc aggtgaattt gcagctgaaa gacttatcaa tgttattaac attaaaaacg
     1021 atgaacttaa aggacgtatc attggtaaag aagggcgcaa tgttaaaacc ttggaaatgg
     1081 ttttaggtgt tgatattatc atcgatgata caccaggtgc tattatagta agttgtttta
     1141 atctttatcg ccgtgctatt gctacaaaag ttatagaact tttagttgaa gatggcagaa
     1201 ttcaacccgc gcgcatagaa gaaattcacg aaaaagtgtg taaagaattt gatagtgcca
     1261 ttctagaaga aggcgaaacc atagttatgg atctaggttt aaataaaata caccctgaaa
     1321 ttgtaaaact cataggaaaa ctcaaatacc gagcaagcta tggacaaaac gctttagcac
     1381 attctttgga agtggctcac cttgcaggaa tcattgctgc tgagtgtggt ggagatgaga
     1441 atttagcacg tcgtgcggga attttacatg atataggaaa agcattaacc catgattttg
     1501 aaggatctca tgtggattta ggtgcagaac tttgcaaacg ctacaaagag catcctgtag
     1561 taatcaatgc tatttacgca catcatggac acgaagaagc tacaagcata gaatcagcag
     1621 ctgtttgtgc agcagatact ttaagtgctg cacgacctgg agctagaaga gaagtgttag
     1681 aagctttctt aaaaagagtc agtgagctag aagatatcgc taaaagtaaa gaaggaatta
     1741 aaaatgccta tgcaatcaat gccggaagag aaattcgcgt catagccaat gctcagcttg
     1801 ttaatgatga tgaaagtgta cttttagcta aggaaatagc agctgaaatt caagaaaaaa
     1861 tgcaatatcc tggtgaaatt aaagtcaatg ttatacgtga acttagagct gtagaatacg
     1921 ctaaataagg tttattatgc aagatatgat tgatacttta ataaaatatg gttatattgt
     1981 tttattcttt tactctttag ggggcgggat ggttggaatt ttagctgcag gagttttaag
     2041 ttctcaagga aaaatggatc ttagtttttg cattgctctt gcttttattg ctaataccat
     2101 aggttcaact ttgcttttta tacttggaaa atattataaa aaagacatta tgccttattt
     2161 taaaaaacac cgacgcaaga tagcccttgc tatgataaaa acaaaacaac atggaattat
     2221 tttacttgta actcaaaaat ttatttatgg tttaaaaact ttcattccca tagctgcagg
     2281 tatggtaaaa tataatttta ttaaattttt tattatcaat actctagcta gtttggcatg
     2341 ggctattgtt ctaggtttta ctgcttatac ttttgggtat gttattgaag caatttttga
     2401 taaactgagt ttatatcctt atgctgctcc tttattttta ttatttttag ccggaataat
     2461 ttggctttat ttaagta
//
LOCUS       DARBBO010000131         2343 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.131, whole genome shotgun sequence.
ACCESSION   DARBBO010000131 DARBBO010000000
VERSION     DARBBO010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2343
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.131"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>2343
                     /locus_tag="SB854_001641"
     CDS             <1..>2343
                     /locus_tag="SB854_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEG0957606.1"
                     /translation="KLFEEFCNPNSLFKGNTEEFYKEVAKLIENSKENLKGFLIDLTF
                     LKDKQKSNFKNLASIYKTFHRDFLLSEFNPNDANSLNNAFYKELLYILGLCESKQNSK
                     LIIAKSEESKEEQGTFYTAINSKLKEENFETILKLLILWLNRILFLKLIESNLVRFND
                     DKNLKFLNFKKIPDFDKLSELFFEVLAKEKSTRKKSEFAYLPYLNSSLFEKQSIENTL
                     EISSLSNDLKLFYYKNTVLKDDKCKAKKGQVGLLEYLFEFLDSFDFGSDDEQSEILSQ
                     KELISSSVLGNVFEKLNGYKEGSFYTPSFITSYMCKESITKVVLDKFNAQFDLDAKDI
                     SELRKSLRKEDKKAQKELLNSIKICDPAVGSGHFLVSALNVMLSIYDELNLFDEEFYL
                     EVQNDEILITGRKGEFIEYKRPSTPKDKAHLIQQELFHTKKDIIENNLFGVDINPNSC
                     EITKLRLWIELLKHSFYQSFDDENYHDLKTLPNIDINIKCGNSLVSYFETGKSLNHYP
                     NIKERINKYKRIVKDYKEGFYTDKSHINQEIKNLKISFKNFCFADKFKKEMKGFNDKC
                     EKYSKKYGNFLAVDDENLKFFVSANLTLFDFDEKEATKEFANLKKEYDNIFNLESNHP
                     FEWRFEFPEILDDDGNFKGFDLIIGNPPYIRIQGLDKNSSQYYKKHFKVASKNYDIYI
                     LFIEQCFKLIKKQGVISFIMPHKWFNADFGVNLREFAKDKISKIISFEEFQIFDASTY
                     TALQWFENNSLHLKFIQADKNIKTKEEMSNFIFNLKEENFK"
BASE COUNT          929 a          341 c          358 g          715 t
ORIGIN      
        1 aaactttttg aagaattttg taatccaaat tcacttttca aaggcaatac tgaagaattc
       61 tataaagaag tagccaaact catagaaaat tccaaagaaa acttaaaagg ctttttgatt
      121 gacttgacgt ttttaaaaga caaacaaaaa tcaaatttta aaaacctagc aagtatttat
      181 aaaacttttc atagagactt tttgctaagt gagtttaacc ccaacgatgc aaattcactc
      241 aacaacgctt tttacaaaga gcttttatat atcttagggc tttgtgagag caaacaaaac
      301 tcaaaactca tcatcgcaaa aagtgaagaa agcaaagaag agcaaggcac tttctacacc
      361 gctataaatt ctaagcttaa agaagaaaat tttgaaacca tcttaaaact tttgatctta
      421 tggcttaatc gcattttgtt tttaaagctt atagagtcaa atttggtgcg ttttaatgat
      481 gataaaaatt tgaaattttt aaatttcaaa aaaatccctg attttgacaa gcttagcgaa
      541 cttttctttg aagttttagc caaagaaaaa agcacgcgaa agaaaagcga atttgcttat
      601 ctgccttatc taaattcttc tttgtttgaa aaacaaagca tagaaaacac gcttgaaatt
      661 tcaagcttaa gtaatgactt aaagcttttt tactataaaa acaccgtgct aaaagatgat
      721 aaatgcaagg ctaaaaaagg acaagtgggg cttttagaat acttgtttga atttttggat
      781 agttttgatt ttggtagcga tgatgagcaa agcgaaattt taagccaaaa agaactcata
      841 agttcaagtg ttttaggaaa tgtgtttgaa aaactcaatg gctacaaaga aggaagcttt
      901 tacacgccaa gctttatcac ttcttatatg tgcaaagaaa gcatcacaaa agttgtgctt
      961 gataaattca acgctcaatt tgatcttgat gctaaagata taagcgaact aagaaagtct
     1021 ttaagaaaag aagacaaaaa agcacaaaaa gagcttttaa actctataaa aatttgcgat
     1081 cctgcggtgg gaagtgggca ttttttggtt tctgctttaa atgttatgtt aagcatttat
     1141 gatgagctaa atctttttga tgaagaattt tatctagaag tgcaaaacga tgaaattctc
     1201 atcacgggta gaaaaggtga gtttatagag tataaacgcc caagtacgcc taaagataaa
     1261 gcccatctta tccaacaaga actttttcac actaaaaaag acatcataga aaacaacctt
     1321 tttggagtcg atatcaaccc taattcatgc gagatcacca agctaaggct ttggatagag
     1381 cttttaaaac atagttttta tcaaagcttt gatgatgaaa attatcacga tcttaaaaca
     1441 ttaccaaaca tcgatataaa cataaaatgc ggaaattctt tggtatctta ctttgaaaca
     1501 ggcaaaagcc taaaccacta tcctaacatc aaagaacgca ttaacaaata caaacgcata
     1561 gtaaaagact ataaagaagg cttttacaca gataaaagcc acatcaacca agagataaaa
     1621 aatctcaaaa tttcttttaa aaatttctgt tttgcagata aatttaaaaa agaaatgaaa
     1681 ggctttaacg ataaatgcga aaaatactct aaaaaatacg gaaatttctt agctgtagat
     1741 gatgaaaatt tgaaattctt tgttagtgcg aatttgactc tttttgactt tgatgaaaaa
     1801 gaagccacaa aagaatttgc aaatcttaaa aaagaatacg acaatatctt taacctagaa
     1861 agcaatcatc cttttgaatg gcgttttgaa ttccctgaaa ttttggacga tgatggaaat
     1921 ttcaaaggct ttgatctcat catcggcaat ccaccttata taagaataca aggactagat
     1981 aaaaattcat cgcaatatta taaaaaacat tttaaagttg caagcaaaaa ttatgatata
     2041 tatattttgt ttatagaaca atgttttaaa cttatcaaga agcaaggtgt aatttctttt
     2101 ataatgcctc ataaatggtt taatgctgat tttggagtaa atttaagaga atttgcaaaa
     2161 gataaaatta gcaaaatcat atcctttgaa gaatttcaaa tttttgatgc ttcaacatat
     2221 acggctttac aatggtttga aaacaattct ttgcatttga aatttataca agcagacaaa
     2281 aacataaaga caaaagaaga aatgtcgaat tttattttta acttaaaaga ggaaaatttt
     2341 aaa
//
LOCUS       DARBBO010000132         2330 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.132, whole genome shotgun sequence.
ACCESSION   DARBBO010000132 DARBBO010000000
VERSION     DARBBO010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2330
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.132"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>2330
                     /locus_tag="SB854_001642"
     CDS             <1..>2330
                     /locus_tag="SB854_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEG0957607.1"
                     /translation="LKNSSNSRKSTASFYTPQFIANFLIQSALKDKLNNENILKFKIL
                     DNACGSGHFLVGVLNAITHIVLSDFDHFTNLKELYEEEKENILNYIKDFVQDYEVDES
                     DILKRLLLKRIIYGVDLNPFSIELTKLSLWIDSFIFGTPLSFIEHHIKCGNALINSNL
                     SDFKDLIKQNSSNLFTNSITQEFEILQEVFEKLDNLKDTNEEQIKQSKQIYQNEITPK
                     LDKLNLYLNYINTLHFVNKEELQILKALSQDDIQNLSQNEQAKAIISKYQKEFNFFNY
                     ELEFPEIVENQVFKGFDIIIGNPPWDKTKFSDSDFFPQYKSDYRSLIASKKKEIQDNL
                     LAKDYIKQNYEKQKAYINDLSEYYKKAYPLNKGSGDGNLFRLFVEKNLSLLKQDGNLA
                     YVLPSALMFEDGSLTLRKEILENKTLEYFYSFENRQAIFADVDSRYKFALMLIKNTQA
                     NHTHKIKMMFYKTDINSLKNKDEILTLNLKDIKKLSPTHLALMELKDKQALEILRKSY
                     NAFQNLSFDYIDFRRELDMTNDKDLFIEEFREGLLPLYEGKMIHQFDANFSQTTYFLE
                     KAKFDERLKSKELYRAKKATGKELNPKLIKYDREFFRLGYRKISRDTDERTLIASLLP
                     KNCGGADSTYSNIPKQYVLKDDVICMDIVPYERILFVLALFNSLVVDFIIRNMVQINV
                     SKSYLERIPLPQPSDEEIQNNEIYKTLAKNALLLQLYNDQNHHFDELKQEFNIKNEEI
                     PKTKKAYDILRAKNDLLVKELYGLSDDEFSYMISTF"
BASE COUNT          956 a          302 c          330 g          742 t
ORIGIN      
        1 cttaaaaatt ctagtaattc aagaaaatca acagcaagct tttatacacc tcaattcata
       61 gctaattttt taatccaaag tgctttaaaa gacaaactaa acaatgaaaa cattttgaaa
      121 tttaaaatac tagacaatgc ttgcggtagc gggcattttt tagttggagt tttaaatgct
      181 attacacaca ttgttttatc agattttgat cattttacaa atttaaaaga actttatgaa
      241 gaagaaaaag aaaatatttt aaactatata aaagattttg tgcaagacta tgaagtagat
      301 gagagtgata ttttaaaacg acttttacta aaacgcatta tttatggggt ggatttaaac
      361 ccttttagca tagagcttac taaacttagc ctttggatag atagttttat ctttggaacc
      421 ccactttctt ttatagaaca ccacataaag tgcggcaatg ctttgatcaa ttctaaccta
      481 agtgatttta aagatttgat aaaacaaaac tcaagcaacc tttttacaaa ttccataaca
      541 caagaatttg aaattttaca agaagtattt gaaaaacttg ataatctaaa agataccaac
      601 gaagaacaaa tcaaacaatc taaacaaatc tatcaaaatg aaatcacacc aaaacttgat
      661 aagttaaatt tatatctaaa ctatatcaac acgcttcatt ttgtcaacaa agaagaatta
      721 caaattctaa aagccctaag tcaagatgat atacaaaatt taagccaaaa tgaacaagca
      781 aaagctatca ttagcaaata tcaaaaagaa tttaatttct ttaactatga gttagaattt
      841 cctgaaatcg tagaaaatca agtctttaaa ggctttgata tcatcatagg taatccacct
      901 tgggataaaa ctaaatttag tgatagtgat ttctttccgc aatataaaag cgattataga
      961 agcttaatcg ctagcaagaa aaaagaaatt caagataatt tgctagcgaa agattatata
     1021 aagcaaaatt acgaaaaaca aaaagcatat ataaatgatt taagcgagta ttataaaaaa
     1081 gcctatcctt taaataaagg cagtggagat ggaaatttgt ttcgtctttt tgtagaaaaa
     1141 aatctttctc ttttaaaaca agatggaaat ttagcttatg tgcttcctag tgctttgatg
     1201 tttgaagatg gaagcttaac tttaagaaaa gaaattttag aaaataaaac tttagagtat
     1261 ttttatagtt ttgaaaatag acaagctata tttgctgatg tggattcaag gtataaattt
     1321 gctcttatgc ttataaaaaa cacgcaagca aatcacactc ataaaatcaa aatgatgttt
     1381 tataaaacag atataaactc attaaaaaac aaagatgaaa ttttaactct aaatttaaaa
     1441 gatatcaaaa agctaagccc aactcaccta gccttaatgg agttaaaaga caaacaagct
     1501 ttagaaattc taagaaaatc ttataatgct tttcaaaact tgtcttttga ttatatagat
     1561 tttagaagag aacttgatat gacaaacgat aaagatttgt ttatagaaga gtttagggaa
     1621 ggacttttac ccttatatga aggtaaaatg atacatcaat ttgatgcaaa ttttagccaa
     1681 actacttatt ttttagaaaa ggctaaattt gacgagcgat taaaaagtaa agaactttat
     1741 agagctaaaa aagctactgg gaaagaatta aatcctaaat tgataaaata cgatagagaa
     1801 ttttttagac ttggatatag aaaaatttca agagataccg atgagagaac tttgatagct
     1861 tctttattgc caaaaaattg cggtggagct gatagtactt atagtaacat tccaaaacaa
     1921 tatgttttaa aagatgatgt aatttgcatg gatatagtgc cttatgaaag aattttattt
     1981 gttttagctt tgtttaattc tttagtggtt gattttatca taagaaatat ggtacaaatc
     2041 aatgtaagca aatcttattt agaaagaatt cccctgcctc aaccaagtga tgaagaaatt
     2101 caaaacaatg aaatttataa aaccctcgct aaaaatgctt tgcttttaca gctttacaat
     2161 gatcaaaatc atcattttga tgagctaaaa caagaattta atataaaaaa tgaagaaatt
     2221 ccaaaaacta aaaaagctta tgatatctta agagcaaaaa atgatttatt ggttaaagaa
     2281 ctttatggtt taagtgatga tgaattttct tacatgataa gcacttttaa
//
LOCUS       DARBBO010000133         2311 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.133, whole genome shotgun sequence.
ACCESSION   DARBBO010000133 DARBBO010000000
VERSION     DARBBO010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2311)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2311)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2311
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.133"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..216
                     /locus_tag="SB854_001643"
     CDS             <1..216
                     /locus_tag="SB854_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG0957608.1"
                     /translation="DIGSVQNQLQVTINNITVTQVNVKAAESTIRDVDFAAESANFSK
                     YNILAQSGSYAMSQANAVQQNVLKLLQ"
     gene            complement(247..2133)
                     /locus_tag="SB854_001644"
     CDS             complement(247..2133)
                     /locus_tag="SB854_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0957609.1"
                     /translation="MREENNFNKNLKALSGFEYNNLRKKLEDLKELREFTFTQGKDNL
                     DINIIKKRNLKKMYQDPIKELEKNLEYFKDFTRYPVLFFYGFGNGILYKILLQNQALK
                     RIIIFEKELELIFLALNFIDFSKDLSLGRLIILHHDDINLPKMDKVFRLIGDLFYRSY
                     NLHIANDFYEHYKEDILKLNKLNMQIIKNHNLMRGNDPKDAMQGIEQFVYNLPQMITH
                     PSYKELLSKRKGVSDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGIK
                     PDYVCMLERDEIVAECFNNDFKDFDKDIIFLVASLVHKKTISYLEKNQRKYILIIKGQ
                     PFARCLGLDDYGYINAGMSVSHMAYELAENLGHKNIILIGQDLAYAKDGQTHSQGFIH
                     ANLHNGDYERDLDRFSTTAYGGNGKVQSSEIWTLFRQIFENFIAFSKSKTYNCTEGGA
                     RIESAIEKPFKELCEDLLENKKDKKFKKLQVLNTKEQVKLGLKIYQKIKKNMNLSLNF
                     KKECKKVQKQIHNLTHGKNELSLEQINQNIDKIKEKLSNKKYLFLQEILGPTLHHEQS
                     ILTPLYLKDIKDESDKQNKLFAWVYAHEALIENIIELLEVQDKRLKIAILPLLDFLEK
                     KKAL"
     gene            complement(2130..>2311)
                     /locus_tag="SB854_001645"
     CDS             complement(2130..>2311)
                     /locus_tag="SB854_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957610.1"
                     /translation="TKEDAFNKSILWIKEHLEFMELVYGHIKAQENALIKNILPLEEK
                     LKERKLDKWMERVRR"
BASE COUNT          735 a          348 c          312 g          916 t
ORIGIN      
        1 gacattggtt cggtgcaaaa tcaacttcaa gttactataa acaacattac tgttactcaa
       61 gtaaacgtta aagcagctga atcaaccata agagatgtag actttgcagc tgagagtgca
      121 aatttttcta aatataacat ccttgcgcaa tcaggttctt atgctatgag tcaggctaat
      181 gcagtgcagc aaaatgtttt aaaacttctt caataatttc ttagatgctt ttatgcatct
      241 aagcttttaa agtgcttttt tcttttctaa gaagtctagc aaaggtaaaa tagcgatttt
      301 aagtctttta tcttgaactt ctaaaagttc tatgatattt tctatcaaag cttcgtgtgc
      361 ataaacccaa gcaaaaagtt tattttgttt atcagattca tctttgatat ctttaagata
      421 taaaggcgtt aatatacttt gttcatgatg taaagtaggg cctaaaattt cttgcaaaaa
      481 gagatatttt ttatttgaaa gtttttcttt gattttgtct atattttggt ttatttgttc
      541 gagagagagc tcgttttttc catgggtaag attgtgaatt tgtttttgaa cttttttaca
      601 ctctttttta aaattcaagg ataaattcat attttttttg attttttgat agatttttaa
      661 tccgagtttt acttgttctt tagtatttaa aacttgtaat tttttaaatt ttttatcttt
      721 tttattttcg agtaaatctt cgcaaagttc tttaaaaggt ttttctatag cgctttctat
      781 cctagcacct ccttcagtgc aattataagt tttacttttg ctaaaagcaa tgaaattttc
      841 aaaaatttgt ctaaaaagtg tccaaatttc agaactttga acttttccat ttcctccata
      901 agctgtagtg ctaaatctat ctaaatctct ttcatagtct ccattgtgta aattagcatg
      961 gatgaaacct tgagaatgtg tttgcccatc tttggcataa gctaaatcct gacctatgag
     1021 aatgatgttt ttatgtccta aattttcagc cagttcataa gccatatgag atacactcat
     1081 gcctgcgtta atatatccat aatcgtctag ccccaagcat ctcgcaaaag gctggccttt
     1141 tatgattaaa atgtattttc tttgattttt ttcaagataa gaaatggttt ttttatgcac
     1201 caaagaagct actagaaaaa tgatgtcttt atcaaaatct ttaaaatcat tattaaaaca
     1261 ttcagctact atttcatcgc gttccaacat acaaacataa tcaggtttta taccatgttt
     1321 agctaaaata ggataagaag aatccgcaca aaaaatcgta gctttattag catacttttt
     1381 taataaaggc aattgtttag taagagatgg tcctgtagaa acaatgatag ctgtatcact
     1441 tacacccttt cttttagaaa gtaattcttt ataactagga tgggtaatca tttgaggaag
     1501 attataaaca aattgttcta taccttgcat ggcatcttta ggatcatttc cacgcataag
     1561 attgtgattt ttgatgattt gcatattgag tttattaagt tttaaaatat cttctttgta
     1621 gtgttcataa aaatcattag caatgtgtag gttataagaa cgataaaaca aatcccctat
     1681 caaacgaaaa actttatcca ttttaggaag attaatatca tcatgatgta aaataatgag
     1741 tcgccctaag cttaaatctt tgctaaaatc tatgaaattt aaagccaaaa agataagttc
     1801 taattctttt tcaaagatga ttattctttt aagtgcttga ttttgaagta gaattttata
     1861 taaaattcca tttccaaaac cataaaaaaa aagcacagga tagcgtgtaa aatctttaaa
     1921 atattctaaa tttttttcaa gctctttgat gggatcttga tacatttttt ttaaatttct
     1981 tttttttatg atattgatat caagattatc ttttccttga gtgaaagtaa attctctaag
     2041 ctcttttaga tcctcaagtt ttttgcgtaa gttgttatac tcaaaaccgc ttaaagcttt
     2101 taaatttttg ttaaaattat tttcttctct caccttctca ccctttccat ccatttatct
     2161 aattttcttt ctttaagttt ttcttctaaa ggaagtatat ttttaatcaa agcattttct
     2221 tgtgctttaa tatgtccata aactaattcc ataaattcta aatgttcttt tatccaaaga
     2281 atacttttat taaaagcatc ttctttggtt t
//
LOCUS       DARBBO010000134         2203 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.134, whole genome shotgun sequence.
ACCESSION   DARBBO010000134 DARBBO010000000
VERSION     DARBBO010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2203)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2203)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2203
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.134"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            29..1093
                     /locus_tag="SB854_001646"
     CDS             29..1093
                     /locus_tag="SB854_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEG0957611.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFALTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
     gene            1083..>2203
                     /locus_tag="SB854_001647"
     CDS             1083..>2203
                     /locus_tag="SB854_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEG0957612.1"
                     /translation="MTLENYAVFGKYFYHDLKHTLKAFNHKESKKCFKFIEKYKNDFY
                     ILMLADYELYRYFQDKNFTSKKAYLSVFAFKKRKKFQKEDIDEEKFIPEFINFLDQDN
                     YKENFIKVKEAISKGRVYQINLTQNFKFHSKMDSFELFKLLLSRQDTEFKAFIKDEIR
                     EILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKNLSENVMICD
                     LLRNDLSKIITKKSLKTKLFEIQSYPTLHQMTSSVQGKLKKNISLHQIFKALFPCGSI
                     TGAPKLESIKFIEELEQRDRGIYCGTIGLIRKNKNKFSVAIRTLEKQDEIYTYSTGSG
                     LVWDSKFKDEFEELKLKSAILNPCDFHLFETMYFKNSQI"
BASE COUNT          881 a          287 c          321 g          714 t
ORIGIN      
        1 aaaattttag attttaggaa aagtttttat gaaataccct ttagattgtg aagaaaattt
       61 tgaaaaatca ttcttatttt ggctagcaaa atatgtaaaa tttaaactca attcgctatc
      121 taacaaagag ttaaaaaatc cacaagcttt agcagaagtt aattttgctc ttacaaaagg
      181 tgtaaaaaac attgatgaac ttgatgctct agcaaaaaaa gcaagaaatg ctggtttaag
      241 tggagttaat acttatttta atcctttaaa aaaagtgttt gaatatttaa atttttacaa
      301 gctttactct ttaaaacaga ttgatgaaga acttattgta gaagttttag caagtataac
      361 aggtgcttta tcagatgcaa gtaaaaaaaa ttaccgtatt gctgtgatta atttttttga
      421 ttttttagac aagcaaaacg aagaagatga aaaagcgcat attttcgata tcaatcttaa
      481 aaactgggca ggtatagcgg gttctaaagg ggtgaaatta cctgaattta tgagtgaaga
      541 agagcttaaa aaatttcttg atgctattga aaatgcagat tttaaaaaca ataccatacg
      601 caataaactt attattaaaa tcatcatttt tacaggcata cgggtaagcg aagctatcaa
      661 tatcaaaatg ggtgatatta gcgaagaaaa cgatctttat atcataagaa taagagctaa
      721 aggcaataaa tatcgtgttg taatgataaa aaaagaactt atttacgatt tgcttaaaaa
      781 tgtaagtatt aattatatga gtaaagacgc cctacttttt gtcaataaaa aaggcactcc
      841 actgactcaa tcttatgtca gtcgcatagt agaacagctt ttatttcgtg caggaattcg
      901 caaacaaaaa aatggtgctc atatgttgcg tcatactttt gccaccctgc tttataaaaa
      961 gcaaaaagat ttagttttag ttcaagaagc tttagggcat gcgagtttaa atacctcaag
     1021 aatttacact cattttgata atgataaatt aaaacttgcc gcacaggttg caaaggaatt
     1081 aagtgactct tgaaaactat gctgtttttg gtaaatattt ttaccatgat ttaaaacaca
     1141 ctttaaaagc ctttaatcac aaagaaagta aaaagtgctt taaatttata gaaaaatata
     1201 aaaatgattt ttatatttta atgcttgctg attatgagct atatagatat tttcaagata
     1261 aaaatttcac aagcaaaaag gcttatttgt ctgtatttgc ttttaaaaaa agaaaaaaat
     1321 ttcaaaaaga agatatcgat gaagaaaaat ttattcctga atttataaat tttttagatc
     1381 aagataatta caaagaaaat ttcatcaaag ttaaagaggc aatctccaaa ggaagagttt
     1441 atcaaatcaa cctcactcaa aattttaaat ttcatagcaa aatggattct tttgaacttt
     1501 ttaaactttt gctttctaga caagatactg aatttaaagc ttttataaaa gatgaaataa
     1561 gagaaatttt atccttttct cctgaacttt ttttcaaaac caaaaaaaga aaaatattta
     1621 caaaacctat gaaaggtaca attaagcgcg ataaagatcc tataaaagat gaagaaaata
     1681 aaatcttctt acaaaatgat acaaaaaatc tgagtgaaaa tgttatgatt tgtgatcttt
     1741 tgcgtaacga tctttcaaaa atcatcacaa aaaaaagctt aaaaacaaaa ctttttgaaa
     1801 ttcaaagtta ccctacttta catcaaatga cttcaagcgt acaaggaaaa cttaaaaaaa
     1861 atatttcttt acatcaaatt tttaaagccc tctttccttg cggttctatt acaggtgctc
     1921 caaagcttga aagtattaaa tttattgaag aattagaaca aagagatcgt ggtatttact
     1981 gcggaactat aggtttaata cgcaaaaata aaaataaatt tagcgtagcc atacgcacct
     2041 tagaaaaaca agatgaaatt tatacttata gcacgggtag cggcttggtt tgggactcaa
     2101 aatttaaaga tgaatttgaa gaattaaaac ttaaaagtgc aatcttaaat ccttgtgatt
     2161 ttcatctttt tgaaaccatg tattttaaaa attctcaaat ttt
//
LOCUS       DARBBO010000135         2134 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.135, whole genome shotgun sequence.
ACCESSION   DARBBO010000135 DARBBO010000000
VERSION     DARBBO010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2134)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2134)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2134
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.135"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..230
                     /locus_tag="SB854_001648"
     CDS             <1..230
                     /locus_tag="SB854_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957613.1"
                     /translation="KDDLKPNVKEKIHFFAMFFTLFKLMAYVILVAGFLFLHRQDKLD
                     IFAYICGISSLLVCVFIFILYIKKYESKKNY"
     gene            208..1395
                     /locus_tag="SB854_001649"
     CDS             208..1395
                     /locus_tag="SB854_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEG0957614.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALIVSSIGVILKENGESSLA
                     VGVVSSCFFVGALIGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAVL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVSKNKGVELGRGVLFCY
                     SLGSFFGPLILGFLMQYFEIKGFIWFYIVSLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            1388..>2134
                     /locus_tag="SB854_001650"
     CDS             1388..>2134
                     /locus_tag="SB854_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEG0957615.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKILSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLRVQIAQLANTNLSPKDTLKELKNIINSSKNE
                     NKQILNQSSFKALLNLSSKLENFKNYISKNP"
BASE COUNT          733 a          288 c          317 g          796 t
ORIGIN      
        1 taaaagacga tttaaagcca aatgttaaag agaaaatcca tttttttgct atgtttttta
       61 ctctctttaa attgatggct tatgtaatat tggttgctgg atttttattt ttacatcgcc
      121 aagataaatt agatatcttt gcttatattt gtggaatttc atccttgcta gtttgtgtgt
      181 ttatttttat tttatatata aaaaagtatg agtccaaaaa aaattattaa atcaatgaca
      241 gcactttttg ctggtatggc atttttattt gcaggtaatg ccttgatagt aagctctata
      301 ggtgttatat taaaagaaaa cggagaaagt tctttagctg ttggagtagt aagttcttgt
      361 ttttttgtag gcgctcttat tggaaccatc agtgctcata aaattatttc tcgtataggt
      421 catatacgct cttttgggct atttggtgct atttttggaa tttcagctat gcttcataca
      481 gtaagcgaaa atcttatttt ttgggctgtt ttaagatttt tcataggaat ttgctactat
      541 ggacttttaa tggtcataga atcatggctt aatgaaaaaa gcaaaaatgc cattcgatct
      601 agaattttag gtttttatga aattgttttt tatcttgcgt ttggtattgg agttttaatc
      661 atagcgttaa atttaagcaa acatagtgta tttatcctca gtgcaacttt aattttactt
      721 tcatctttac ctttaaatct aattaaaatc aaagaacctg ttttacccgc atcaagtcct
      781 atttctatac ctaaaatttt tgatatagct cctttagcta tcgtcacaag ctttatagcc
      841 ggaatgctta taaatggctt tttttctatg gcatctttat ttatactttt gcaaggtttt
      901 gatacaaaag cggtttctta ttttatattt tgtggggttt taggtggttt tattgcacaa
      961 accatcatag gaactatttc agacaaactt ggtcgcaaat ttgccattat cacttgtgca
     1021 agtataggat ttatcactat gcttatattt atctttttta aacttcattt atatatgcaa
     1081 tattttttag gaattactct tggtatagga atattttgct tatatgcttt agcacttgct
     1141 agagcaaatg atgttttagt aagcaaaaat aaaggtgtag agttaggtcg tggggttctt
     1201 ttttgctatt ctttaggctc tttttttggt cctttgattt taggtttttt aatgcaatac
     1261 tttgaaatca aaggttttat atggttttat atagtttctt tagcattttt aattcttttt
     1321 gctatcaata aaccaaatat tttaaataaa aaatttaaga aaaagcctgg aaatatggtg
     1381 atatttgatg attaatactc aactagcaag tcaaattgcc aatacgcaaa aaaatgattt
     1441 aaaagtagat aactctgctt caaaagataa aacaaattta aaagacaatc caaaagaagc
     1501 acttgcacaa gctttaaagc aaaatttagg tttaagcaag gacgctagta gtgaggaaat
     1561 actagcaaaa tttgttcaaa atgaaacagg taccaaatta aaagaacttg ttaataaact
     1621 tttagatcaa atcaatgctc aaaaaaatcc cgattcccct gtacttaaac aaggaaaaaa
     1681 tttaaattta gctcctaatt ttgctaatga attaaaaatc ttaagtacag aacttgcaaa
     1741 aagtgatact tttacacaag ttttagacag attaaatcaa attttaaaac ctgccagtga
     1801 aataaaaaac aataacttag ctcctttgtt taaaaattca ggcgtatttt tagaagctaa
     1861 attaaaagat gccctaaacg aagaattact acccaaaagt tttcactctc ttttaagtac
     1921 aatcaaaggt cttagtagcg aaaaactaag ggttcagata gcccagcttg caaatacaaa
     1981 tttaagccca aaagacactt taaaagaatt aaaaaatatt attaattcta gcaaaaatga
     2041 aaataagcaa attttaaatc aaagttcttt taaagcactt ttaaatttaa gttctaaatt
     2101 ggaaaatttt aaaaattata taagtaaaaa tccc
//
LOCUS       DARBBO010000136         2082 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.136, whole genome shotgun sequence.
ACCESSION   DARBBO010000136 DARBBO010000000
VERSION     DARBBO010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2082
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.136"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            21..743
                     /locus_tag="SB854_001651"
     CDS             21..743
                     /locus_tag="SB854_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEG0957616.1"
                     /translation="MEINKELHCLIKEYYNICKVFGNILDTPSKGGNISIKNDKYMII
                     KASGQDLKQEHKICILENENNIGTYFSNKIGNITKPSMEIGMHRIIQNKYVVHYHPVY
                     ILPYLCDKNFKFTYKCIDFILPGEQLCKELSKKYYYEQKGMVMLRNHGVIIFSEILED
                     LFILHQTLKNEFFEKNNNIFTPDDAIDIESFELWLFREAMENIARKKQLNLSEISAIQ
                     ITNLINMPEEKYRYGYMQDKEK"
     gene            743..>2082
                     /locus_tag="SB854_001652"
     CDS             743..>2082
                     /locus_tag="SB854_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HEG0957617.1"
                     /translation="MNIIIPATGIGKRFKEAGYKELKPFIKVNENNCILDFVVNCFDK
                     IKDKFYFIIRKEEQDKFINFITSRKLNANVIVYDGLKLGPAGTLIGVRDFLDEILDKP
                     VIVSYCDFGQKWNYEHFLDFVKKNNEAQGIIPCYTGYHPHLEPVENVYAVCKVYDKSN
                     TVYKVIEKYCSKDKFNEFHSSGIYYFKSLKIVFEAIEKQIAAIDMLNGEYYLSITNNY
                     LQKVLCYPFVEKFYQFGTPKDFEYAKEKLRISTNLINEQIDIDNTVILSAGRGERFLN
                     LNFSQPKPFLPLGQSTIINNIIEKLENVHTNIICVGAQDHEKYWQNIKTEVRYVKPNK
                     IGAAYSYKESCADLKGDVLILPCDLLAKHINSDFKKIKDESDAIIFVAKASKFNYDNP
                     NYFTWVNGDEKGFVKEICVKYRAENSHLIMIGSFYFKNNQTLISYINEMFKKEV"
BASE COUNT          836 a          201 c          334 g          711 t
ORIGIN      
        1 taatcgttgg gtaaagtgaa atggaaataa ataaagaatt gcattgttta attaaagagt
       61 attataatat atgtaaggtt tttggaaata ttttagatac tccttctaaa ggaggtaata
      121 tttcaataaa aaatgataaa tatatgatta taaaagcctc tggtcaagat ttaaaacaag
      181 aacacaaaat ttgcatattg gaaaatgaga ataatattgg aacttatttt agtaataaaa
      241 taggcaatat aacaaagcct tcaatggaga ttggaatgca tagaataatt caaaataaat
      301 atgtagttca ttatcatcca gtctatattt taccatatct ttgtgataaa aattttaaat
      361 ttacttataa atgcatagac tttattttac ctggagaaca attatgtaaa gaattatcta
      421 aaaagtatta ttatgagcaa aaaggaatgg taatgttaag aaatcatgga gttattatat
      481 tttcagaaat actagaagat ttatttatac ttcatcaaac attaaaaaat gaattttttg
      541 aaaaaaataa taacattttt acacccgatg atgctataga tattgaaagt tttgagttgt
      601 ggttatttag agaggcaatg gaaaatattg ctagaaaaaa acaattaaat ttatctgaaa
      661 ttagtgcaat acaaattaca aacttgatta atatgccaga agaaaaatac cgatatgggt
      721 atatgcaaga taaggagaaa taatgaatat tattatacca gccactggaa taggcaagcg
      781 ttttaaggaa gctggttata aagagttaaa accgtttata aaagtaaatg aaaataattg
      841 tattttagat tttgtggtaa attgttttga taaaataaaa gataaatttt attttattat
      901 tagaaaagaa gagcaggata aatttattaa ttttataaca agcagaaagt taaatgctaa
      961 tgtcatagtc tatgatggat taaagcttgg tccagctgga actttaattg gtgtaagaga
     1021 ttttttagat gaaattttag acaagcctgt aattgttagc tattgtgatt ttggtcaaaa
     1081 atggaactat gaacattttt tagattttgt taaaaagaat aatgaagcac aaggtattat
     1141 tccttgttat acgggttatc atccacatct agaaccagtt gagaatgttt atgcggtatg
     1201 taaagtatat gataaaagca ataccgtata taaagttata gaaaaatatt gctctaaaga
     1261 taaatttaat gaatttcact ctagcggaat ttattatttt aaatctttaa aaatagtttt
     1321 tgaagctata gaaaaacaga ttgctgctat tgatatgcta aatggtgaat attatttatc
     1381 aataacaaat aattatcttc aaaaagtact ttgctatcct tttgtagaga agttttatca
     1441 atttggcact ccaaaggatt tcgaatacgc caaggaaaaa ttgagaataa gtacaaactt
     1501 aataaacgag caaattgata tagacaatac tgtaatttta tcagctggtc gtggtgaaag
     1561 atttttaaat ttaaattttt ctcaacctaa accatttcta ccgcttggtc aatcaactat
     1621 tataaataat attattgaaa aattggagaa tgtccataca aatattattt gtgttggagc
     1681 acaagatcat gagaaatatt ggcaaaatat aaaaactgaa gttagatatg ttaagccaaa
     1741 taaaataggc gcagcgtatt cttataaaga atcttgtgca gatttgaaag gagatgtttt
     1801 gatattgcct tgtgatttgc ttgctaagca tataaattca gattttaaaa aaataaagga
     1861 tgaatctgat gcaattattt ttgttgctaa agcttccaaa tttaattacg ataatccaaa
     1921 ttattttact tgggtaaatg gtgatgaaaa aggatttgta aaggaaatat gtgtgaagta
     1981 tagagctgaa aatagtcatt taattatgat aggaagtttt tattttaaaa acaatcaaac
     2041 tttaatttcc tatatcaatg aaatgtttaa aaaagaagtc aa
//
LOCUS       DARBBO010000137         2043 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.137, whole genome shotgun sequence.
ACCESSION   DARBBO010000137 DARBBO010000000
VERSION     DARBBO010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.137"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..468)
                     /locus_tag="SB854_001653"
     CDS             complement(<1..468)
                     /locus_tag="SB854_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG0957618.1"
                     /translation="MGFRINTNVAALNAKANADLNSKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQT"
     gene            complement(565..>2043)
                     /locus_tag="SB854_001654"
     CDS             complement(565..>2043)
                     /locus_tag="SB854_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0957619.1"
                     /translation="TIDLSEELKTYQVILFDVAAKDVEIHIAMVFDQQSILEYLSLYE
                     MFISSHYYLKYYEISILSLNELCIKSASVAIRNADITCFLPLLTHGQFLQNIPSMLES
                     IPFQRILNERKNKFENAIVVSAGPSLAKQLPLLKAYQDKAVIFCADGALSMLEKEGII
                     PDYVTNLDCRDLAMKFFQNKENLKQSIIALECATHPNVVRSLKAENCMIVLRNKALYQ
                     RFNLNDFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEEGNSHSKGFDFGEKF
                     SGEENIDKLKVPAYAGKGEVLTHITWNDYRIKLEYLFACNDQKAKFYNATEGGARINF
                     TEELSFKECCEKLLTKEKPKFELPKSLTKNRSDKLLVKFKEKIQKDQENAKRFLDDAL
                     ALKQILENILSKDFILPLEFLEKVYQNIENFNHSLDEDEFIQDEVLRGAFAYRGKFIA
                     DVLKLHIQDKTHFITAYIKAYHEWLLYFMEKLEQKYKSLSKV"
BASE COUNT          670 a          337 c          278 g          758 t
ORIGIN      
        1 agtttgattt gaacttgcgc cgatttgaaa ttcttgatta ataaaatttc cacttaaaag
       61 ttgtttaccg ttaaatgaag tagtatttgc gatattgtca agttcttcca ttaaacggtt
      121 gatatctgct tgaagcatag ttcttgtttt taaactttgt ccatcttgag ccgcttgagt
      181 tgccttagtt ttgattgtat ctaagatttt aagttgctca tccatagcct tatcagcagt
      241 ttgtaaaata cctaaagcat cgttaccatt agatatagct tgacctaaag tattagcttg
      301 agatcttaaa ctatctgcta tcgccatccc tgaagcatca tctgctgcgg agttaattct
      361 aagacctgaa ctaagtctgc ttaaagaagc atctaaactt ttactattta aatcagcgtt
      421 tgctttagca tttaaagctg caacattggt gttaatacga aatcccattt taaatccttt
      481 taaaaaaatt caagctcatc catgaacttg ttaaatgcta tatcgtgcaa tcaaaaaaat
      541 attttatact ttggtaataa aatttcatac ttttgacaaa gacttgtatt tttgctctaa
      601 tttttccata aaataaagca accattcatg gtaagcttta atataagctg tgatgaaatg
      661 cgttttatct tgtatatgaa gtttcaatac atcagcgata aattttccac gataagcaaa
      721 agctcctctt aaaacttcat cctgtataaa ctcatcttca tctaaagagt gattaaaatt
      781 ttctatgttt tgatagactt tttctaaaaa ttctaaaggt aaaataaaat ctttactgag
      841 tatattttct aaaatttgtt ttaaagctaa agcatcgtct aaaaatcttt tagcattttc
      901 ttgatctttt tgtatttttt ctttgaattt aactaggagt ttatcacttc tatttttagt
      961 taaacttttt ggaagttcaa atttaggttt ttcttttgta aggagttttt cacaacattc
     1021 tttaaaggaa agttcttcag tgaaattaat ccttgctcca ccttcagtag cattgtaaaa
     1081 tttagccttt tgatcattgc aagcaaaaag atattcaagt tttatacgat aatcattcca
     1141 agttatatgg gttaaaactt cgcctttacc tgcataggca gggactttaa gtttatctat
     1201 attttcttca ccgctaaatt tctctccaaa atcaaaacct tttgagtgtg aatttccttc
     1261 ttcatcaaag gctaaatctt gtcctatcat gatgatattt ttaaatccta aagctaaagc
     1321 taaggtataa gaaaaatgac ttacatgagt acctgtatcg atatagccaa agtcattaag
     1381 attgaagcgt tgataaaggg ctttatttct taaaacaatc atacaatttt cagcctttaa
     1441 actacgcacg acattaggat gtgtagcaca ctcaagagca atgatgcttt gttttaaatt
     1501 ttctttattt tgaaaaaatt tcattgccaa atccctacaa tctaaattag taacataatc
     1561 aggtattata ccttcttttt caagcatact taaagctcca tcagcacaaa atatcactgc
     1621 tttatcttga taagctttaa gtaaaggaag ttgtttagct aaactaggtc ctgcagaaac
     1681 tactatagca ttttcgaatt tgttttttct ttcgtttaag attctttgaa aaggaatgct
     1741 ttcaagcata gaggggatgt tttgtaaaaa ctgtccatgt gttagcaaag gtaaaaaaca
     1801 agtaatatct gcatttctta ttgctacact tgcactttta atacaaagtt cattcaaaga
     1861 taaaatagaa atttcatagt atttaagata ataatgcgag ctaataaaca tttcatataa
     1921 acttaaatac tctaaaatgc tttgttgatc aaaaaccata gcaatatgaa tttccacatc
     1981 cttggctgct acatcaaaca atatcacttg ataagttttt agctcttcac tcaaatctat
     2041 cgt
//
LOCUS       DARBBO010000138         1834 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.139, whole genome shotgun sequence.
ACCESSION   DARBBO010000138 DARBBO010000000
VERSION     DARBBO010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1834
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.139"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..966)
                     /locus_tag="SB854_001655"
     CDS             complement(<1..966)
                     /locus_tag="SB854_001655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957620.1"
                     /translation="MNSIKSNKLLLDIVFEKNFKQVNIEKLENIDFEWLIDSFLVKQS
                     LVMFYASAGSGKSYFMLYLSKYLLDNNKVDRIFYFDGDNNERILKERKGSEFLKSSNF
                     YYFFSNNTNKFSLFRDLKKAKDLKNTLIVIDSIRNFIQDDFNKDFTMIKVFDELQKIR
                     DNGATIIFLHHQPKQKPDENNKAYKGATTFLDSVDEGYFLHKKDIKADEEFVILLEPQ
                     KRRFATKSQAFKINTLNLEFKFVDYLKFAENHKTQITLNLVKEILNENKNGICQQDLA
                     SKIKKKIEQDYVEIVGRNALWKLLDKYRNIYWSIFYEAQEKGGKKK"
     gene            complement(963..1181)
                     /locus_tag="SB854_001656"
     CDS             complement(963..1181)
                     /locus_tag="SB854_001656"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEG0957621.1"
                     /translation="MQIIEPKNKNFLTPKQLECEFGISLSKQYKMRMQKNQNQANSLP
                     FIKLGKTILYKRSEIEIWLDKNMVKGNL"
     gene            1294..>1834
                     /locus_tag="SB854_001657"
     CDS             1294..>1834
                     /locus_tag="SB854_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEG0957622.1"
                     /translation="MKTIGEKLRDLRNAYGLSQREFGEKVGITKGSINSYENNVNSIT
                     QGAKWKILQATGIGFEYFDSDMTLSEAFKKYNIDISKKLEFKKIEESICAICDGVKNY
                     IDGKYLETFNIKSLFLNHLFDGMGYFDLCFLKVKHNELEPYAKNGDILVVSSNKNAEN
                     GDKIIINYKENILIVQYFHE"
BASE COUNT          638 a          229 c          218 g          749 t
ORIGIN      
        1 tttcttcttt ccaccttttt cttgtgcttc ataaaaaata ctccaataaa tgtttctata
       61 tttatctagc agtttccata aagcatttct acctactatt tctacataat cttgttcaat
      121 tttctttttg attttacttg ctaaatcttg ctgacaaata ccatttttgt tttcattaag
      181 aatttcttta acgagattaa gggtaatttg tgttttatga ttttctgcaa attttaaata
      241 atccacaaat ttaaattcta aatttaatgt gtttatttta aatgcctgag attttgtagc
      301 aaatcttctt ttttgaggct ctaaaagaat gacaaactct tcgtctgctt taatatcttt
      361 tttatgtaaa aaatatcctt catctacact atctaaaaaa gttgttgcac ctttgtaggc
      421 tttattattt tcatctggtt tttgttttgg ttgatgatgt agaaaaataa tagtagctcc
      481 attatctctt attttttgta attcatcaaa aaccttaatc attgtaaagt ctttattaaa
      541 atcatcttga ataaaatttc taatgctatc aattacaatt aatgtgtttt ttaaatcttt
      601 agcttttttt aaatctctaa aaaggctaaa cttatttgta ttgttagaaa aaaaataata
      661 aaaatttgaa ctttttaaaa attcacttcc ttttcgttct ttcaatattc tttcattatt
      721 atcgccatca aaataaaata tacgatctac tttgttatta tcaagtagat atttacttaa
      781 atataacata aaataactct taccacttcc tgcgctagca taaaacatta ctaaagactg
      841 ttttacaaga aaactatcta tcaaccattc aaaatcaatg ttttctagtt tttctatatt
      901 tacttgcttg aaattctttt caaaaacaat atcaagtagt agcttgttac tctttataga
      961 attcataaat tccctttgac catgttttta tctagccata tttcaatctc acttctttta
     1021 tatagaattg tttttcctaa tttaataaaa ggcaaggagt tagcttgatt ttgatttttt
     1081 tgcatacgca ttttatattg tttactaaga ctaattccaa attcgcattc taattgctta
     1141 ggggttaaaa aatttttgtt ttttggttct ataatttgca tgtactatcc tttatattct
     1201 cataaaataa taatttattt tctaaaaatt gtcaataatt atcatcaaat ttttttattt
     1261 tctttaaaat tattttattg tagaatatat tttatgaaaa cgataggtga aaaattaaga
     1321 gatttgcgta atgcttacgg attaagccaa agagaatttg gagaaaaagt aggtattacg
     1381 aaaggtagta tcaattctta tgaaaacaat gtaaattcca ttactcaagg tgcaaaatgg
     1441 aaaattttgc aagcaacggg gatagggttt gaatactttg attctgatat gacgctaagt
     1501 gaggccttta aaaaatacaa tatagatata agtaaaaaac ttgaatttaa gaaaatagaa
     1561 gaaagtattt gtgctatatg tgatggagtt aaaaactata tagatggaaa atatttagaa
     1621 acatttaata taaaatcatt atttttaaat catttgtttg atggtatggg atattttgat
     1681 ttgtgttttt taaaagtaaa acataatgaa ttagagcctt atgcaaaaaa tggtgatatt
     1741 ttagttgtat caagtaataa aaatgctgaa aatggagata aaatcatcat taattacaaa
     1801 gaaaatattc ttatagttca atattttcat gagt
//
LOCUS       DARBBO010000139         1823 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.140, whole genome shotgun sequence.
ACCESSION   DARBBO010000139 DARBBO010000000
VERSION     DARBBO010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1823)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1823)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1823
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.140"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            14..1108
                     /locus_tag="SB854_001658"
     CDS             14..1108
                     /locus_tag="SB854_001658"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HEG0957623.1"
                     /translation="MLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSFYPFKKIV
                     VTSSNITYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLVSKNLFDR
                     LIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKALDQNLEFT
                     DDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDVHEFGENR
                     PLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMKFKNANSM
                     ELLKQAYDKVREIGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEFRINVKAT
                     TTEKLGFIGRKEGMAVLSSVNLKYFDWTRL"
     gene            1105..>1823
                     /locus_tag="SB854_001659"
     CDS             1105..>1823
                     /locus_tag="SB854_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEG0957624.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFDEYNGEKYYDI
                     ILLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKAAEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCINLNDN"
BASE COUNT          692 a          257 c          296 g          578 t
ORIGIN      
        1 aatgagcctc attatgttag cagctggaaa ttctactcgt tttaatacaa aggtaaaaaa
       61 acaattttta cgacttggaa atgaccctct ttggctttat gcaacaaaaa atttaagctc
      121 tttttatcct tttaaaaaaa tagttgttac ctctagtaat atcacttata tgaaaaaatt
      181 taccaaaaac tatgaattca tagaaggtgg tgataccaga gcagaatcct taaaaaaagc
      241 cttagagctc atagatagcg aatttgttat ggtaagtgat gtagcaaggg tattggtgag
      301 taaaaatttg tttgatcgtt tgattgaaaa tttagataaa gcagattgta ttacccctgc
      361 tttaaaagtt gcagatacaa cactttttga caatgaagcc ttgcaaagag aaaaaatcaa
      421 actcattcaa accccgcaaa tttctaaaac caaattgctt aaaaaagcct tggatcaaaa
      481 cctagaattt acagatgata gcacagctat agctgcaatg ggtggaaaaa tttggtttgt
      541 tgaaggtgaa gaaaatgcaa gaaaactaac ctttaaagaa gatcttaaaa aacttgattt
      601 gcctacacct agctttgaaa tttttactgg caatggtttt gatgtgcatg aatttggaga
      661 gaatcgccct ttgcttttag caggagtgca aattcatcct actatggggc ttaaagcaca
      721 cagcgatgga gatgttttag ctcactcttt aaccgatgcg attttaggtg ctgcaggact
      781 tggagatata ggagagcttt atcctgatac tgatatgaaa tttaaaaatg ccaactccat
      841 ggagctttta aaacaagctt atgataaagt cagagaaata ggttttgaac tcattaatat
      901 agacatttgc gtcatggcac aaagccctaa acttaaagac tttaaacaag ctatgcaaag
      961 caatatagct catactttag atttagatga atttagaatc aatgttaaag ccacaacaac
     1021 ggaaaaattg ggttttattg gaagaaaaga aggtatggcg gtgcttagta gtgtaaattt
     1081 aaaatatttt gattggacaa gattatgaaa gttttaatta ttgaaaatga aatttatcta
     1141 gcgcaaagca ttagcattaa actaagtgat gctggatata gctgtgaaat tattaactcg
     1201 tttgatgaat acaatggtga aaaatactat gacattatac tgctttctac aaatactaat
     1261 aattttctaa aagccgtagg tcagtttaaa catagtatta ttattttgct tatttcttat
     1321 ataagtacag atacagtttc aaatcctttg aaattaggtg ctagtgatta tattcaaaaa
     1381 ccctttatga tagaagagct gattagaaaa ataaagcatt atcaggattt tagaaaactt
     1441 tcaatcctta ataaagctta tcaaagctat atcaaatcaa gattagaaac aatcaaaatt
     1501 ccagagtata attataaaaa attaaaactt ccattgatat taaaatccaa caagcaaagc
     1561 agtgctgatg cttttgtttt taattatgca aatgaatgtg acattactct ttcttttatt
     1621 gatttaacat ctacaaattc agttgaaaaa gttatgaaac ttcccacaga aaacaatctt
     1681 ttatttttga gtaattttca agcattaaaa gcagcagaaa aggaaaaact cctagatttt
     1741 atacaaaaca aaaatgttat tttgcatacc aattcaaata cagatgattt aaaaataaac
     1801 tgcattaatt taaatgataa tga
//
LOCUS       DARBBO010000140         1811 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.141, whole genome shotgun sequence.
ACCESSION   DARBBO010000140 DARBBO010000000
VERSION     DARBBO010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1811
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.141"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            219..1535
                     /locus_tag="SB854_001660"
     CDS             219..1535
                     /locus_tag="SB854_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEG0957625.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVVIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMLI
                     GFLMDIVVICGNYYVLHYTKSELFGVGLSNIFARIVAIVALLVILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQATSIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVALLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
     gene            1511..>1811
                     /locus_tag="SB854_001661"
     CDS             1511..>1811
                     /locus_tag="SB854_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG0957626.1"
                     /translation="MARQSSSLKSFIYKDECYFYSKKRIKTLRLRINERGEFVLSIPY
                     FCTFKSVYEFLDKSSSWMNEAKKRFEKKVLKDDELIFLAKKYKIIFDENVKKTYFD"
BASE COUNT          587 a          202 c          336 g          686 t
ORIGIN      
        1 atttattgca aatattaaaa gaacctttgc aagataaaat ttgcaagaag gaagtctcat
       61 ataaatgtga tgagctagtg tatactttca aagaagaaaa tcatcaaatt attttaaata
      121 taacaaattg agtatattaa atgtttatat ttaaaaaagt aatttttaag tagaattgtt
      181 ttttaaaaaa atatttaaaa aagagataag ataacatcat ggcaaaaaaa caactctcct
      241 taacaagact tagttttcct atattttggg atttgctttc taagtattta actgtgatta
      301 tcaataccgc tatggtgtcg cattattcta attttcttgt tggtgctatg ggcgctggaa
      361 atcaaatttt agatcttttt atcactattt tttcattttt aagtgtgggt tgtagcgtgg
      421 tgatcgcaca agcaattggt gcaaaagatc atgttttagc aagaaaagtg attcatcaaa
      481 gtttgttctt aaatgcactt ttaggctttg tatgcggtgt gcttatttta tggcacgggg
      541 agtatttgct ttatctttta aaaatcccac aagaattgct caaagatagc gaaatttact
      601 tacatatgct tgcaatttgt ttgttttttg atgccatagg aattgtttta gctgctattg
      661 taagggttta taatatggct tattgggtca tgcttatagg ttttttgatg gatatagtgg
      721 tgatttgtgg aaattattat gttttgcatt atacaaaatc agaacttttt ggagtagggc
      781 ttagtaatat ttttgcccgt attgttgcta tagtggcttt acttgtgata cttttttata
      841 aacttaaaat tcatcttaaa atcaaagaaa tgataaaact tgaaaaagag gtattaaaaa
      901 aggttttaaa tataggcgga ttttcagcag gggaaaatct tttgtggata gtccaataca
      961 ctatagcctt tgcttttgta gcaagcttag gtgaagcaag cttgagtgta caaacgattt
     1021 attttcaaat ttcaatgctt atcatgctta taggacaagc tacgagcata gctaatgaaa
     1081 ttatagtagg taaattagtc ggtgctagat atgaaaatat cgcttataaa catgcttggc
     1141 gtgctttata ttttagcgta atagcgagtg ctttagtagc gcttttgaac tatctttgtc
     1201 aagattttac tatgcaaatt ttagggctta aagaagagtt aaaaaattta atgatacctt
     1261 tatttgctct ttcaatcttt cttgaaattt cacgcacttt taatatagtc atggttaatt
     1321 ccttgcgcgc aagtggcgat gctaagtttc cattttttag tggacttgtt tttatgatgg
     1381 gggtatcttt acctgtgggt tatgtgcttt gttttcattt taatcttgga attttagggg
     1441 tttggatagg attttgtgcg gatgagtttt tgcgtggaat ggtaaattca tacagatgga
     1501 aaagtaaaaa atggcaaggc aaagctctag tttaaaatct tttatttata aagatgagtg
     1561 ctatttttat tctaaaaaac gcataaaaac tttaagatta aggatcaatg aaaggggtga
     1621 atttgttctt agcattcctt atttttgcac ctttaaaagt gtttatgagt ttttagataa
     1681 atcaagttct tggatgaatg aggcaaaaaa aagatttgaa aaaaaagttt taaaagatga
     1741 tgagttaatc tttttagcta aaaaatataa aattattttt gatgaaaatg tcaaaaaaac
     1801 ttattttgat a
//
LOCUS       DARBBO010000141         1766 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.142, whole genome shotgun sequence.
ACCESSION   DARBBO010000141 DARBBO010000000
VERSION     DARBBO010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1766)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1766)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1766
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.142"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            56..439
                     /gene="ctb"
                     /locus_tag="SB854_001662"
     CDS             56..439
                     /gene="ctb"
                     /locus_tag="SB854_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HEG0957627.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     EHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
     gene            complement(436..>1766)
                     /gene="recG"
                     /locus_tag="SB854_001663"
     CDS             complement(436..>1766)
                     /gene="recG"
                     /locus_tag="SB854_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEG0957628.1"
                     /translation="HAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKAHQ
                     INVFNIANWLKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLGAA
                     LMVYPKQAILMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANLVI
                     GTHALIHLESHNAVLVMIDEQHRFGSAQREKIHSLNKQEFAPHFIQFSATPIPRTLSM
                     IQSELLNFSFIKQMPFKKDITTYCIQNEGFSKLSEKIKEEIAKNHQIIIIYPLLSASD
                     KIPYLSLEQAKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGISLP
                     RLSMIVIVGAERLGLATLHQLRGRVGRVGLKSACYLYTKLKEIPSRLKEFASTLDGFK
                     IAELDLKNRLSGDLLDGFMQHGNEFKFFDFSKDEEILEKVKKDLAKKLPN"
BASE COUNT          614 a          299 c          248 g          605 t
ORIGIN      
        1 ttatcttatt tttgctatat taacgccata aaattaacat ttaagaaagg cttatatgaa
       61 atttgaaaca attaatcaag aaagcatagc aaaactcatg gaaatatttt atgaaaaagt
      121 tagaaaagat aaggatttag gtcctatttt taacaatgct attggaacaa gcgatgaaga
      181 atggaaagaa cataaagcaa aaataggaaa tttttgggca ggcatgcttt taggcgaagg
      241 tgattataat gggcaaccct taaaaaagca cttagatcta cctccttttc ctcaagagtt
      301 ttttgaaatt tggctaaaac tttttgaaga aagtttaaat atagtttata atgaagaaat
      361 gaaaaatgtc attttacagc gtgcacaaat gatagcttca cattttcaaa atatgcttta
      421 caagtacggc ggacattaat ttggcaattt ttttgccaaa tcttttttta ccttttctaa
      481 aatctcctca tccttggaaa aatcaaaaaa tttaaactca tttccatgtt gcataaaacc
      541 atcgagcaaa tctccactca aacgattttt aagatcaagc tctgctattt taaacccatc
      601 taaagtgcta gcaaattctt ttaaacgact cggaatttct ttaagcttag tataaagata
      661 gcaagcactt ttaagcccta cacgacctac acggccacga agttgatgta aagtagcaag
      721 tcctaaacgt tccgctccta caatcactat catactcaat cttggcaaag aaatacctac
      781 ttccaccact gtagtgctta gtaaaatatt tccctcgtct ctaaaacgct ctaaaatttc
      841 atctttttgt ttatcttttc catgagttac aaaaactttt tcataatgac tctgccaata
      901 ttctttggcc tgctctaaag aaagataagg aatcttatca ctagcactca ataagggata
      961 aataatgata atttgatgat ttttagcgat ttcttctttg atcttctcgc taagcttaga
     1021 aaaaccttca ttttgtatgc aataagttgt aatatctttt ttaaaaggca tttgtttaat
     1081 aaagctaaaa tttaaaagtt cagattgtat catgcttaaa gttcttggaa taggcgtagc
     1141 tgaaaactgt ataaaatgag gggcaaattc ttgtttattt aaagaatgaa ttttctcacg
     1201 ctgagctgat ccaaaacgat gttgttcgtc tatcattaca agtacggcat tatggctttc
     1261 taaatgaatt agagcatgag tgcctataac aagatttgct ttttggatat tttgttctaa
     1321 atctttttct tttttacccc ctttaataaa caaaatattc ataaaatcag gtaaaaattt
     1381 cttagcctct tcataaagct gatacgctaa aatactagta ggtgccatta aaatagcttg
     1441 cttaggataa accatcaaag ccgcaccaag taaaaccaag gttttaccac accccacatc
     1501 acccataatc acacgccttt tggcttcttt tgagtgtaaa tctttttcta tgtcttttaa
     1561 ggcattaagc tgatctttag taagagaaaa aggcaaatct ttaagccaat tggctatatt
     1621 aaaaacattg atttgatgag ctttaaaatg cgttttttta gcttttaaac gctttaaaaa
     1681 attatatatt tctatatatt ttaaatcttt gctaaaattt tgcaaatttt caaacataaa
     1741 aaaacttttt tcatcataag catgca
//
LOCUS       DARBBO010000142         1764 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.143, whole genome shotgun sequence.
ACCESSION   DARBBO010000142 DARBBO010000000
VERSION     DARBBO010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1764)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1764)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1764
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.143"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..205
                     /locus_tag="SB854_001664"
     CDS             <1..205
                     /locus_tag="SB854_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957629.1"
                     /translation="NINGAFFEFLNDKLKHYEKNQKSKLESLEKVLQSLKNQDINILN
                     SFEENLEKIEKLKQLEMGLLNAD"
     gene            195..>1764
                     /locus_tag="SB854_001665"
     CDS             195..>1764
                     /locus_tag="SB854_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HEG0957630.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGCDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDRSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLNTEELDNVLNYAKSVFLKYFDELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     ALKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYENFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKVPYISSDDAF
                     LAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHI
                     FQSDKNFSELRAFCNASDEYFLKDFKELLFRSILELDLFFEKLNLKAFTNYENATKLS
                     LAFFSRKINESRVLY"
BASE COUNT          692 a          173 c          283 g          616 t
ORIGIN      
        1 aaatatcaat ggagcatttt ttgagttttt aaatgataaa ttaaaacatt atgaaaaaaa
       61 tcaaaaatca aaattagaaa gtcttgaaaa agttttacag agtctgaaaa atcaagatat
      121 taatatttta aattcttttg aagaaaattt agaaaaaatt gaaaaattaa aacaacttga
      181 aatggggctt ttaaatgcag attaatcttt taaatgattt tataaaagcc tatgaaaata
      241 cttatagtgt gagttttgat gatagtttta aagggcgtat tcaagagctt tgcaaggaac
      301 ttaatgagcc ttttatgcat gcaagttatg ctttagaaaa tgaattaaaa gagcttgtat
      361 tttctttgga taagaatgtt aatatcgcta ttatagggca gttttcaagt ggtaaatcaa
      421 gtttactaaa tttgatcttg gggtgtgatt gtttgcctac gggtgttgtt cctgttactt
      481 ttaaacctac ttttttacgc tatgcaaaag aatatttttt aagagtagaa tttgaagata
      541 gaagtgatat tatcacaaat atagaaaaat tagcctttta tacggatcaa agaaatgaag
      601 taaaacaagc aaaaagtttg catatttttg cacctattcc tttacttgaa aaaatcactc
      661 ttgtagatac tccgggttta aatgcaaatg aaaatgatac tttaacaact cttgatgagc
      721 ttaaaaatat tcatggagcg atttggttaa gtttgattga taatgcaggc aaaaaaagtg
      781 aagaagatgc cataaaagca aatttagaac ttttaggaga aaatagcatt tgtgtattaa
      841 atcaaaaaga taaattaaac acagaagagc tagataatgt tttaaattat gcaaaaagtg
      901 tatttttaaa atattttgat gagcttattg ccatttcttg caaagaagct aaagatgagc
      961 aaagctatga aaaatctaat tttcaatctt tgcttgattt tttaactcag ctagatacaa
     1021 cagctttaaa agaaaaattt gttaaaagaa aaattttaaa tttatgcgaa attttagaag
     1081 atgaaaacca actttttgta ggtatttttg atcgtttatt aaatcaattt caaagttatg
     1141 aaaagcattt acttttagcg tatgaaaatt ttttaaaaga gattgaaatt ttaaatcatc
     1201 agattttaga acagcttaaa agcattagcg aaagaatttc tagtgaaatt tttgcaagtg
     1261 ttaaggaaaa agatgcttat ttttacaaag aaagcaaagg atttttaaag aaagatttat
     1321 acacaagata tgattataaa gtgccttata tttcaagcga cgatgctttt ttggcgatgt
     1381 tttacaatag tgatgtaatg agtaaagagt ttaaaaaaat caaaaatgaa ctttataaat
     1441 cttttgaaga aatcaagatg aaattaaaag attttataaa catacttgag agagaaattt
     1501 tgctttttaa agcagaattt tcaaacatac aaaaagatca cattttccaa agtgataaaa
     1561 attttagtga attaagagct ttttgcaatg caagtgatga gtactttttg aaagatttta
     1621 aggagctttt atttagaagt attttagagc ttgatttatt ttttgaaaaa ttaaatctta
     1681 aggcttttac aaattatgaa aatgctacga aactaagcct tgcatttttt agtcgtaaaa
     1741 tcaatgaaag tcgtgttctt tatg
//
LOCUS       DARBBO010000143         1570 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.144, whole genome shotgun sequence.
ACCESSION   DARBBO010000143 DARBBO010000000
VERSION     DARBBO010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1570
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.144"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..266
                     /locus_tag="SB854_001666"
     CDS             <1..266
                     /locus_tag="SB854_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957631.1"
                     /translation="TQNLQELIKLLKLASKNNETFKEREKLLYCPETLSLITINNHLK
                     EDDIQFIEQYYTYNQNTHEYERNDNLSSSDLEKLSNFFKLKNL"
     gene            591..>1570
                     /locus_tag="SB854_001667"
     CDS             591..>1570
                     /locus_tag="SB854_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957632.1"
                     /translation="MITYSNLSDVKKRIEDEFTHRNAECDKYDYLIAITCGAIAGIMD
                     IFLVGNPKDSYLGKKVDKTVEKMTQKFAQLCGWDKQKALDKNKDLTKSAIAFLENKFK
                     INYDQTTTNGRNGTNGKVDNLSMKNHHLKSIGHSPDIFGLFVSIVNQFTNTSTFVSNG
                     KIITIDTNTFELQGGNFIAKIFCGFFNWFGHLASDWCGSSGGKERGAGIPMPFYNLFL
                     LCDFGNFGQHRQTLAQIATQVFEQGYDLRHGVTMSIPVMINEMLIRFMYIIKAKFYHK
                     KEWKECIPKDDIPELNKMLLIGSGTFLLIDTGGAWIKSKNPITNPVVFLS"
BASE COUNT          664 a          186 c          232 g          488 t
ORIGIN      
        1 atacacaaaa tttacaagaa ttaataaaat tattaaaatt ggcttcaaaa aataatgaaa
       61 cttttaaaga aagggaaaaa cttttatatt gcccagaaac gctttcattg ataacaataa
      121 ataatcatct aaaagaagat gatattcaat ttatagaaca atactatacc tataatcaaa
      181 atactcatga gtatgagcgc aatgacaatc tttcttcgtc ggatttagaa aaactttcaa
      241 atttttttaa attaaaaaat ctataaggat aattttatgg ataaaataca agaaaacacc
      301 aaaatagaaa aggctatatt agccgaaaaa caacaaatct ttttaataca aaataaatta
      361 tccgaaattg aaaaaaatat caaagaataa tgtttaacca tagaacagat tcaaaatagt
      421 atcacagaaa aaaatcaaaa tttgagcaat atagaatata aggaaaatca atcaatcgat
      481 tcattggaaa atttttttaa cacttatagc aattgggaaa catattgtca aaaaattgaa
      541 aaatatttaa actgaaaaaa ataaactcaa atgaagattc tttaaaattt ttgatcactt
      601 attcaaattt atcagatgtt aaaaaaagaa ttgaagatga atttacccat agaaatgcag
      661 agtgcgataa gtatgattat ttaatagcaa taacatgtgg agcaatagct ggcattatgg
      721 acattttttt agttggaaat cctaaagata gctatctagg aaaaaaggta gataagacgg
      781 tagaaaaaat gactcaaaaa tttgcacaat tatgtggttg ggataagcaa aaagcattag
      841 acaaaaacaa agatttaact aaaagtgcta tagcgttttt ggaaaacaaa tttaaaatta
      901 attatgatca aactactaca aatggaagaa atggaacaaa tggaaaagta gataatttaa
      961 gtatgaaaaa tcatcattta aaaagcatag gtcactctcc agatattttc gggttatttg
     1021 tatctatagt aaatcaattt accaatactt caacttttgt cagcaacgga aaaatcataa
     1081 ccatagatac aaatactttt gaattacaag ggggaaattt tattgctaaa atattttgtg
     1141 gattttttaa ttggtttgga catttagcat ctgattggtg tggatctagt ggaggcaagg
     1201 aaagaggtgc aggcattcct atgccttttt ataatttatt tttactttgt gattttggaa
     1261 attttggaca acatagacaa acactagcac aaattgcaac ccaagttttt gaacaaggat
     1321 atgatcttag gcatggagtt actatgtcta ttcctgttat gattaatgaa atgctaattc
     1381 gttttatgta tataataaaa gctaaatttt accacaaaaa agaatggaaa gaatgtatac
     1441 caaaagatga catacctgaa ttaaataaaa tgcttttaat aggatctggt acttttttat
     1501 taattgatac tggtggtgca tggataaaaa gtaaaaatcc tataacaaat ccggtagttt
     1561 tcctttctga
//
LOCUS       DARBBO010000144         1569 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.145, whole genome shotgun sequence.
ACCESSION   DARBBO010000144 DARBBO010000000
VERSION     DARBBO010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1569)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1569)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1569
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.145"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            191..1312
                     /locus_tag="SB854_001668"
     CDS             191..1312
                     /locus_tag="SB854_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl sugar amidotransferase"
                     /protein_id="HEG0957633.1"
                     /translation="MIYCDHCVMPNTRPGINFTKDKEGKNICSACINHKNKENIDYKA
                     RFKELEVLCDKYRRMNGKFEYDCAIAVSGGKDSHFQVHIMKEKLGMNPILFSVEDNFT
                     MTEAGKKNLKNLSETFGCHIISLKPDIKTQKKVMLKTFEKYGKPTWFIDRLIYSYPFA
                     MALKFNTPLLVYGENVSYEYGGSDTEETPSAKEIFLNGVASDLNINEFIDDEIKEENL
                     QLFFNPNKDKLDKLNPIYLSYFVKWNSYSNYIFAKSRGFTDLEGEWDRTMCAENFDQV
                     DSIGYILHAWMKYPKFGHACASDYAARFVRYGLLSRKEAIELVQKRDHKLDNKCVEDF
                     CNFIGISKTTFWKIVEKHYNMDLFYKNDFGEFKLKNKLQ"
     gene            1330..>1569
                     /locus_tag="SB854_001669"
     CDS             1330..>1569
                     /locus_tag="SB854_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEG0957634.1"
                     /translation="MQNSLEAYTMKYNENGYGLLFPDGHVVRFYERILKYKLNKINGN
                     LLDFGCGNGVHSAYFQSKGFKTFGIDIVPSLKEIWE"
BASE COUNT          623 a          170 c          268 g          508 t
ORIGIN      
        1 ataaaatttg taagaattta aaagaagatg atgaaaattt ttaccatcca aaaatcttta
       61 aaaaggcctt ataaaaagga attttaggta gaaaaataaa acaaacataa gtgatatttt
      121 ataaaataag caaatattaa tttaatattt tatacaatct aatattttta ttaaattgaa
      181 ggggtgggga atgatttatt gtgatcactg cgtgatgcca aatactagac ctggtattaa
      241 ttttacaaaa gataaagaag gtaaaaatat ctgttcagct tgcatcaatc ataaaaataa
      301 agaaaatatt gattataaag caaggtttaa agagcttgaa gtcttatgtg ataaataccg
      361 cagaatgaat ggaaaatttg aatatgattg tgctattgcc gtaagtggag gtaaagattc
      421 gcattttcaa gtgcatatca tgaaagaaaa acttggaatg aatcctattc tttttagcgt
      481 tgaagataat ttcaccatga ctgaagcagg caagaaaaat cttaaaaatt taagtgaaac
      541 ttttggttgt catatcatta gcttaaagcc tgatatcaaa actcaaaaaa aagttatgct
      601 aaaaaccttt gaaaaatatg gaaaacctac ttggtttatt gatagactga tttacagcta
      661 tccttttgct atggctttaa aatttaatac acctttattg gtttatggag aaaatgttag
      721 ttatgaatat ggaggtagtg ataccgaaga aactcctagc gctaaagaaa tatttttaaa
      781 tggtgtagct agtgatttaa atataaatga atttatagat gatgaaatca aagaagaaaa
      841 tttgcaactc tttttcaatc caaacaaaga taaactcgat aaacttaacc ctatctatct
      901 aagttatttt gtaaaatgga attcttatag caattatatt tttgctaaaa gtcgtggttt
      961 tactgatcta gaaggcgaat gggatagaac aatgtgtgca gaaaattttg atcaagttga
     1021 tagtataggc tatatcctac acgcttggat gaaataccct aaatttggtc atgcttgtgc
     1081 gagtgattac gcagctcgtt tcgtgcgtta tggactttta agcagaaaag aagctattga
     1141 acttgtgcaa aaaagagatc ataagcttga caataaatgc gttgaagatt tttgcaattt
     1201 cataggtatt agtaaaacta cattttggaa aatagtagaa aaacattaca atatggattt
     1261 attttataaa aatgattttg gagaatttaa attaaaaaac aaattacaat aaaaatataa
     1321 aggaaaaaaa tgcaaaactc attagaagct tatacaatga aatataatga aaatggatac
     1381 ggattacttt ttccagatgg tcatgtagta cgtttttatg aaagaatttt aaaatacaaa
     1441 ctaaataaaa taaatggaaa tttacttgat tttggttgtg gcaatggtgt acattcagcg
     1501 tattttcaaa gcaaagggtt taaaactttt ggaatagata tagttccaag tttaaaagaa
     1561 atttgggag
//
LOCUS       DARBBO010000145         1551 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.146, whole genome shotgun sequence.
ACCESSION   DARBBO010000145 DARBBO010000000
VERSION     DARBBO010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1551)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1551)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1551
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.146"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..1438
                     /locus_tag="SB854_001670"
     CDS             <1..1438
                     /locus_tag="SB854_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0957635.1"
                     /translation="LFTYEIIQKSVKIFNLFIHNDFYQQFYSTQIQNINTQLIEMIRF
                     IVLNKGNDPHDSLVGIKHTLDNLPKMLNHGIFQEFLKERRAKVENAIIVSTGPSLIKQ
                     LPLLKKYANKATIFCADSSYPILAKHGIKPDYVCMLERDDIVSKCFDNDFGDFNKGIL
                     FILASVVHKEVLDFLEKDQRAYMLVHRPLNFAASLKLDEYGYLGVGHSVSNMIYELAG
                     ALRFENIIFIGQDLAYGEDGSSHPKEHIHGSQGEEIRGEKYTLAYGGKGKVRTQLTWN
                     LFRQAFEKDIFWAKEKLNITTYNCTEGGARIEGTIEKPFLWACENLLDKDLNKPFDLP
                     KFLDKKLAKEKLEKTKKYLQKSILESKEFIKKTQTQLQKLRYTLEKNDKNFQTLEKIK
                     NDLLNLFKEFKKLKLFNELCQAIYFHNECEILKFEVLNTNKQKENLIDFLKIQHNWFI
                     QGLGYLDTQNKTIEKSLENWNFDDIIKK"
BASE COUNT          628 a          212 c          221 g          490 t
ORIGIN      
        1 actttttact tatgaaatca ttcaaaaaag tgtaaaaatt tttaatcttt ttatccataa
       61 tgatttttat caacaatttt atagcactca aatacaaaat ataaatactc aactgataga
      121 aatgatacga tttatcgttt taaacaaagg taatgatcca catgattctt tagttggaat
      181 caaacatacc ctagataatc tccctaaaat gttaaatcat ggaatttttc aagaatttct
      241 caaagaaaga agagctaagg ttgaaaatgc tatcattgtt tctacaggac caagtcttat
      301 aaaacaactt cctttgttaa aaaaatatgc taataaagct acaatttttt gtgcggattc
      361 ttcttatcct attttagcta aacatggtat aaagcctgat tatgtttgta tgttggaacg
      421 tgatgatata gtttctaaat gttttgataa tgattttggc gattttaaca aaggcatact
      481 tttcatactt gcttctgtgg ttcacaaaga agtattagat tttttagaaa aagatcaaag
      541 agcttatatg cttgtacatc gccctttaaa ttttgcagct agtttaaaac ttgatgaata
      601 tggatatctt ggagtaggac acagtgtttc caatatgatc tatgaactag caggagcttt
      661 aagatttgaa aatatcattt ttataggaca ggatttagct tatggcgagg atggaagttc
      721 acatcctaaa gagcatatac atggaagtca aggtgaagaa atcagaggag aaaaatatac
      781 actagcttat gggggaaaag gcaaagtaag aactcaactt acttggaatt tatttcgtca
      841 agcttttgaa aaagatatat tttgggcaaa agaaaaactc aatatcacca cctacaactg
      901 caccgaaggt ggagcaagaa tagaaggaac tatagaaaaa ccttttttat gggcttgtga
      961 gaatttactt gataaagatt taaataaacc ttttgattta ccaaaatttc tagataaaaa
     1021 actagccaaa gaaaaattag aaaaaacaaa aaaatatctc caaaaaagca ttttagaatc
     1081 caaagaattt ataaaaaaaa ctcaaactca gcttcaaaag cttagataca ctttagaaaa
     1141 aaatgacaag aattttcaaa ctcttgaaaa aatcaaaaat gatcttttaa atctttttaa
     1201 agaatttaaa aaactcaagc tttttaatga actttgtcaa gctatttatt ttcataacga
     1261 atgcgaaatt ttaaaatttg aagttttaaa cacaaataag caaaaagaaa atttaataga
     1321 ctttttgaaa atacaacaca attggtttat ccaaggttta ggatatcttg atactcaaaa
     1381 caaaaccata gaaaaaagtt tagaaaattg gaattttgac gatataatca aaaaataatt
     1441 aggatttcca atgaccttca cccctaccca aaaagaactc tttaacaaaa acattgaggc
     1501 tttaaacaat attcttttaa aagaaagttt aaaagaaatc aagtctagta a
//
LOCUS       DARBBO010000146         1402 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.147, whole genome shotgun sequence.
ACCESSION   DARBBO010000146 DARBBO010000000
VERSION     DARBBO010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1402)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1402)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1402
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.147"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>1402
                     /locus_tag="SB854_001671"
     CDS             <1..>1402
                     /locus_tag="SB854_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEG0957636.1"
                     /translation="DFGGLNHLRSLESLLVLFKTSPKNYALNFIDEKKLSELRLAGDF
                     LLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHFGANELLVQKALQSMHTIGF
                     YTHFLAKQIQDGLNYTLKQEYKFKTLVEVLEYLLKLEDKHVIFDLNLVFALRRLKYGK
                     KDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPFWTVRFLSDEEGNYSFDEQV
                     FLMLSEFEKYEDELEILQKLKTDEKMILKLVILLSAIESENEISLAGIYRAYCSKFDL
                     KNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSKLENLENLELLYTLTWLKAK
                     ALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKELTLKRSKIFLEQDEILQDK
                     IIHIKSNLFIIKNTFEDIVMISKLAKENDFKFWFNNETNLSLQIVAPLHFNIAIILSS
                     LTNLNLIFMNFFELFDN"
BASE COUNT          530 a          134 c          220 g          518 t
ORIGIN      
        1 gattttggcg gattaaatca tttaagatcc ttagagagtt tgcttgttct ttttaagact
       61 tctccaaaaa attatgcttt aaattttata gatgaaaaaa aattaagcga gttgcgttta
      121 gctggagatt ttttactttc tttaaaatca gcgatgaatt tattaagtgc taaagatgag
      181 gatgaatttt tacttattaa tgttcatgat ttgagtgaat taatgtataa aaaagctaaa
      241 aaacattttg gagcaaatga gttgttggtt caaaaggctt tgcaaagtat gcatactata
      301 ggtttttata cacacttttt agcaaagcaa attcaagatg gattaaatta tactcttaaa
      361 caagaatata aatttaaaac tcttgtggaa gttttagaat acttattaaa acttgaagat
      421 aaacatgtta ttttcgatct taacttggtt tttgccctaa gaagattgaa atacggtaaa
      481 aaagatatag aaaaagcttt aatacttttt gagaaaattt tttataaaag gcatagtttt
      541 tgtgttttaa aacttttgct tgatagtgga attttaaaag atttatgtaa gcctttttgg
      601 acagttcgtt ttttaagcga tgaagaagga aattatagtt ttgatgagca agtttttctt
      661 atgttaagtg aatttgaaaa atacgaagat gagcttgaga tactccaaaa acttaaaacc
      721 gatgaaaaaa tgattttaaa gcttgtgata cttttaagcg ctatagaaag tgaaaatgaa
      781 atttctttag caggcatata tagagcgtat tgctctaaat ttgatttaaa gaatgaaatt
      841 ttagaatggg gtcttaagat atttaaaaac aataatgcct taaaagatct tgtagaaaaa
      901 gaagatatat acaatcctat tgttgtaagt agcttggttt ctaagctaga aaatttagaa
      961 aatttagagc ttttatatac tttaacttgg ctaaaggcta aggctttaaa ttataatgct
     1021 ttttatttta gagttcttga taaactttta gaaaatgcaa aacaaggttt tgaagatgaa
     1081 aatctacttg aagaaagcgc aagaagagta aaaaaagaat taacacttaa aagaagtaag
     1141 atttttttag agcaagatga aattttgcaa gataaaatca tacatatcaa atcaaatctt
     1201 tttattataa aaaatacttt tgaagatatt gttatgattt ctaaattagc caaagaaaat
     1261 gattttaaat tttggtttaa taatgaaaca aatcttagtt tgcaaattgt tgcaccactt
     1321 cattttaata ttgccattat tttaagttct ttaacaaatt taaatcttat tttcatgaat
     1381 ttttttgaac tttttgataa ta
//
LOCUS       DARBBO010000147         1280 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.148, whole genome shotgun sequence.
ACCESSION   DARBBO010000147 DARBBO010000000
VERSION     DARBBO010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1280
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.148"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            44..787
                     /locus_tag="SB854_001672"
     CDS             44..787
                     /locus_tag="SB854_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HEG0957637.1"
                     /translation="MTIDLNHNFTSFVLLDEVDFNFSELKSILEDKFNIKIADENFTK
                     EGVIFSYENMLVTLNLINNPIPNHEVEYYANFNFMWKDALEQTKKHKAHLLIAVLSQD
                     QSKLEQAKMFTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYV
                     SVYPSENGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKD
                     ILKFEDGKEIKFIKSQGISVENESLKIIF"
     gene            851..1267
                     /locus_tag="SB854_001673"
     CDS             851..1267
                     /locus_tag="SB854_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HEG0957638.1"
                     /translation="MKAKLTLLALLGTTVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGEWKEVDGKYKALPHTILPNVMKKVSATQPNA
                     QILEVDKEINGYKFKFNNNMEVYTDMQGNILGQKLD"
BASE COUNT          485 a          133 c          210 g          452 t
ORIGIN      
        1 tttttattag gttataattt ataaaaattt aatagggttt aacatgacta tagatttaaa
       61 tcacaatttt acctcttttg ttcttcttga tgaagttgat tttaattttt cggagttaaa
      121 aagcatttta gaagataaat ttaatataaa aatagctgat gaaaatttta ccaaagaggg
      181 cgtgattttt tcatatgaaa atatgttagt tactctaaat ttgattaaca atcctatacc
      241 taatcacgaa gtagaatact atgcaaattt taattttatg tggaaagatg ccttagagca
      301 aactaaaaaa cataaagctc atcttcttat agcggtgcta agtcaagatc aaagcaaatt
      361 agaacaagct aaaatgttta cgaaaattgc agctttatgt ttggataata aacatgcttt
      421 aggtttttat acaggtgcag ttgttttaga gcccagtttt tatatagaaa atgcaaaaat
      481 gttagatgat aatcgcttgc cggtatataa ttggatatat gttagtgttt atcctagtga
      541 aaatggagtt aatgcttata cttatgggct tagaaatttt gataaattag aacttgaagt
      601 ttgtgattta aacatagaag aaaaagaact tttcttttgt atttatgata ttgttttgca
      661 tattttaact tatgatatta atctaaaaga taaagatatt ttaaaatttg aagatggaaa
      721 agaaataaaa tttataaaaa gtcaaggtat aagtgttgag aatgaaagct tgaaaattat
      781 tttttaagtt tcacattcac ttcacagttt tgagttaaac tttcgccaac caagaaaaaa
      841 aggagaaatt atgaaagcaa aactaacttt acttgctttg ttgggtacta cggtgctttt
      901 agctaaagat atggttgttc ctgctagcga acttccaaat aatgccaaag aatttatttc
      961 taaaaatttt aaaaccgctc aaattggttt ggtgaaaaaa gatatagatt cttatgatgt
     1021 gattttaaat gatggaactg aaattgattt tatgatcaat ggagagtgga aagaagttga
     1081 tggaaaatat aaggctttgc cacatactat cttacctaat gttatgaaaa aagtgagtgc
     1141 aactcaacca aatgctcaaa ttcttgaagt agacaaagaa attaatggtt ataaatttaa
     1201 gtttaataac aatatggaag tttatacaga tatgcaagga aatatcctag gtcaaaaatt
     1261 agattaattt ttgaaaattt
//
LOCUS       DARBBO010000148         1266 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.149, whole genome shotgun sequence.
ACCESSION   DARBBO010000148 DARBBO010000000
VERSION     DARBBO010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1266)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1266)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1266
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.149"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..151
                     /locus_tag="SB854_001674"
     CDS             <1..151
                     /locus_tag="SB854_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEG0957639.1"
                     /translation="VKNASVEILQEIYKDEILLFKMELTLAFIKNEKPARMDMQLKKL
                     FEELF"
     gene            complement(143..>1266)
                     /locus_tag="SB854_001675"
     CDS             complement(143..>1266)
                     /locus_tag="SB854_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957640.1"
                     /translation="DVKPVENFYPKLSVQECNTNCLFDLLESRLYLSFLSEFADQNDQ
                     FLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEKTIKSYSNTIINSSIAYLLRQRAE
                     IKVKVFLTGTEDSDKIRAALDAVQAQGYQYAIAGFTLKGANELKNYSGNMKIFIPTIH
                     KNNIQISNQNIIFGSIDYDTQIATLLSKSNANIAIFSDGSALSSNLNSRILAQNNNAR
                     IYTIEGEKLDFSRLLRSQGGVNNASIFFNTPLIKTALASSQLRIYNIHPYVLLSTQIN
                     YNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNEIFNQSIDYNWIAYATSIGVDYFY
                     TEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASFEELK"
BASE COUNT          416 a          165 c          201 g          484 t
ORIGIN      
        1 agtcaaaaat gcttctgtgg aaattttaca agaaatttat aaagatgaaa ttttgctttt
       61 taaaatggaa ttaactttag cttttattaa aaacgaaaaa ccagctagaa tggatatgca
      121 gttaaaaaag ctctttgaag aattatttta attcttcaaa gcttgcttgt ttgccttgca
      181 taagacgcac tttgtaatca acttgagaat ttttgatttt ctcatcaaat aaactttcgc
      241 tttttttatt taagaattcg gtataaaagt aatcaactcc tatactagta gcataagcaa
      301 tccagttata atctatactt tgattaaaaa tttcattaag atagactaag ttatcatcgt
      361 ggttattgat ggaattagca atgatgaaat tttctctatc tccttgttgt gttaaactta
      421 aaaatgttgg attatagttg atttgagtgg ataaaagcac ataaggatga atgttataaa
      481 ttcttagttg agaacttgct agagctgttt tgatcaatgg agtgttaaaa aatattgagg
      541 cattattaac tccgccttgt gatcttaaaa gtctgctaaa atcaagcttc tctccttcta
      601 tagtatatat tctagcatta ttattttgag caagaattct tgaatttaga ttgcttgata
      661 aggcagagcc atcgctaaat attgcgatat tagcatttga tttgcttaaa agtgtggcaa
      721 tttgagtatc atagtcaata cttccaaaaa taatattttg atttgaaatt tgtatgttgt
      781 ttttatggat agtcggtatg aaaattttca tatttcctga gtaatttttc aactcattag
      841 caccttttag agtaaatcca gctatggcat actgatatcc ttgagcttgt actgcatcaa
      901 gcgcggctcg aattttatca ctatcttctg tgccggttaa aaaaactttt actttgattt
      961 cggctctttg tcttaaaaga taggctatgc ttgaatttat tatagtattt gagtagcttt
     1021 ttatggtttt ttctgggata attatcgcaa gtttaacaga agtaattttt tgaacatttt
     1081 tttcaaaatc agtaatggaa tttaataatt ttgcataaac attggataaa aattgatcgt
     1141 tttggtctgc aaattcactt aaaaaactga gatacaatct tgattctaaa agatcaaaaa
     1201 gacaatttgt gttgcattct tgaacgctta atttaggata aaaattttca acaggtttta
     1261 catcga
//
LOCUS       DARBBO010000149         1217 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.150, whole genome shotgun sequence.
ACCESSION   DARBBO010000149 DARBBO010000000
VERSION     DARBBO010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1217)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1217)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1217
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.150"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..256
                     /locus_tag="SB854_001676"
     CDS             <1..256
                     /locus_tag="SB854_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957641.1"
                     /translation="TIKIKNFPHYSNLKIKIYSLNSYIGDIIPKFNIVNGDILINFIG
                     RSITDDSRFRVEFLNNNAPTGFFFDFDVTMQKNFQTGNTH"
     gene            342..761
                     /locus_tag="SB854_001677"
     CDS             342..761
                     /locus_tag="SB854_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HEG0957642.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTNKDIALISAKSNISEVSELHTHIHKDGKIMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDTKVNLDLKFNNHKTIELKNIDSKEF"
     gene            765..1217
                     /locus_tag="SB854_001678"
     CDS             765..1217
                     /locus_tag="SB854_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957643.1"
                     /translation="MRKIIFILAFAFVIAILYIIFDFYVIKDSQKITKTDFSTPLTCD
                     FNVKDCTYSFNNKKVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIK
                     PKIHRLNSTDYESKIVLAACVLDTMRFRVEFMDNNKPIGFYFDFELKK"
BASE COUNT          483 a          145 c          150 g          439 t
ORIGIN      
        1 tactataaaa attaagaatt ttcctcatta ttctaattta aagattaaaa tttatagttt
       61 aaattcctat ataggcgata tcattcctaa atttaatata gttaatggtg atattcttat
      121 aaattttata ggtagaagca ttaccgatga ttctagattt agggttgaat ttttaaacaa
      181 taatgctcca actggttttt tctttgattt tgatgttact atgcaaaaaa attttcaaac
      241 aggtaacaca cattgaaaaa ttttcaaaat tttatattca aataaaaata ttttttgata
      301 taatgaataa atatttaata ttataaaaat aaggatacaa tatgaaaaaa attcttctct
      361 taggtgctct ttttgctgta aatctttggg ctgttaatga tatagaggta aaaaatgcct
      421 ttgtaaaaca aactccacct catgcgcaaa atagtgctat ttttcttact atttttaata
      481 atactaataa ggatattgct ctaataagtg ccaaaagcaa tatcagtgaa gtaagtgaac
      541 tgcatacaca tatacataaa gatggaaaaa taatgatgca aaaaattcct gaaattatta
      601 taaaagctca ttcaagcaca gagcttaaat caggaggtta ccatataatg cttttaaaac
      661 taaaaaaacc tattattaaa gacacgaagg taaatttaga tttaaaattt aataatcaca
      721 aaaccataga gttaaaaaat attgattcta aagaatttta attaatgaga aaaattattt
      781 ttatcctagc ttttgctttt gttattgcta ttttatatat tatttttgat ttttatgtaa
      841 taaaagattc tcaaaaaata acaaaaactg atttttctac cccattgact tgcgatttta
      901 atgttaaaga ctgcacatat agttttaaca ataaaaaagt cttaatttcc ctaaatccca
      961 aacccttaca atctttagat gttacaaatc taaagattgt aaatctagga aattataaca
     1021 acttaggaat taaaatttat ggattgaata tgtatatggg cgaaattaaa cctaaaatac
     1081 atcgattaaa ttcaacagac tatgaaagta aaatagttct tgctgcttgc gttttagata
     1141 ctatgcgttt cagggtagaa tttatggata ataataaacc catagggttt tattttgatt
     1201 ttgagctaaa aaaatga
//
LOCUS       DARBBO010000150         1197 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.151, whole genome shotgun sequence.
ACCESSION   DARBBO010000150 DARBBO010000000
VERSION     DARBBO010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1197)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1197)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1197
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.151"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..>1197)
                     /locus_tag="SB854_001679"
     CDS             complement(<1..>1197)
                     /locus_tag="SB854_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002831381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEG0957644.1"
                     /translation="LSELENLKNSYGYEGKNYKSIFKKEVYINYSCLERIVFSNCEFK
                     SKISLHKIDNSHKIAFCNGIDFANCIFEDDVNFKRFVSGTPLPDNKYYNNERDTIFEN
                     CIFNKRVDFHNSKFVNSVYFTNSHFKDYVDFHACEFNKIACFYGVTFDKAPNFSACYF
                     KEPKAVNLINVDIDKLDFKSVEKYIEDNYQDETCENKQEITEEQRNNNCKLKCAKHLK
                     DSFRVIKDVLITQNNTLEAQEWHKLELYVKEKENHINLNVKEREKNTDIFKNILIWFN
                     CVLLNVYRNTSDHHNDFLKILNFTIGMIALYGVFFYLLLEVYMYLDIIFIESFFRFKI
                     IDYIYLCLFVFLTIIMFLYKNKKSIFTKSILFLTIYITFYIVYIKILNFINITYFREW
                     FFYLLC"
BASE COUNT          473 a          164 c           92 g          468 t
ORIGIN      
        1 agcacaataa ataaaaaaac cattctctaa aatatgtaat attgataaaa tttaaaattt
       61 taatataaac aatataaaaa gttatatata ttgttaaaaa taaaatagat tttgtaaaaa
      121 tacttttctt atttttatat aaaaacataa taatagttaa aaatacaaac aaacacaaat
      181 atatataatc tatgatttta aatctaaaaa aactttcaat aaatataata tctaaataca
      241 tatatacttc taacaataga taaaaaaaca ctccatataa agcaatcatc cctatagtaa
      301 aattcaaaat ttttaaaaaa tcattatgat gatcactagt atttctatac acattcaaca
      361 aaacacaatt aaaccatatt aatatattct taaatatatc agtatttttt tctctttcct
      421 taacatttag atttatgtga ttttctttct ctttcacata aagttctaat ttatgccatt
      481 cttgagcttc tagggtatta ttttgtgtga ttaaaacatc ttttatgact ctgaaagaat
      541 cttttaaatg tttggcacat tttaatttac aattattatt acgctgttct tctgttattt
      601 cttgtttatt ttcacacgtc tcatcttgat aattatcttc tatatatttc tccactgatt
      661 taaaatctag cttatctata tcgacattga ttaaatttac agcttttggt tctttaaaat
      721 aacaagcact gaaattcgga gctttatcaa atgtaactcc ataaaaacaa gctattttat
      781 taaattcaca cgcgtgaaaa tcaacataat ctttaaaatg agaattagta aaatatacac
      841 tattaacaaa tttagaatta tggaaatcaa ctcttttatt aaaaatacaa ttttcaaata
      901 tagtatctct ttcattatta taatacttat tatcaggcaa tggagtgcct gatacaaagc
      961 gtttaaaatt tacatcatct tcaaaaatac aatttgcaaa atctatacca ttgcaaaaag
     1021 caattttatg actattatca attttatgta aagatatttt agatttaaat tcgcaatttg
     1081 aaaaaactat tctttcaagg caactatagt ttatataaac ttctttttta aaaatacttt
     1141 tatagttttt tccttcatag ccataactat tttttaaatt ttcaagttca cttaggg
//
LOCUS       DARBBO010000151         1179 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.152, whole genome shotgun sequence.
ACCESSION   DARBBO010000151 DARBBO010000000
VERSION     DARBBO010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1179
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.152"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            64..591
                     /locus_tag="SB854_001680"
     CDS             64..591
                     /locus_tag="SB854_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter"
                     /protein_id="HEG0957645.1"
                     /translation="MNKTALTKTYTKDIQNSCLNSKKIVLSLATISFLASCTHATLTP
                     EIKTYEETNRHAKARSGLQSRNSNNETINNLQTSTKTISGTGNTLVIESSGTITISNG
                     GQQAVNFQPNSSTSTFLNKGTLIGGNNTASVQLGANGNNGVNIETFDNQGIIGNGSSK
                     FGVTVWGGVKITLNL"
     gene            780..>1179
                     /locus_tag="SB854_001681"
     CDS             780..>1179
                     /locus_tag="SB854_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957646.1"
                     /translation="MGVRVNSTINTFVNSGLITITVKGVHWSDGIGINANVKTLKNTG
                     TIQGFSAPIKSSGGTIETLINEGTMKGESIGIYMSGGLVKTLINSGTINQNNSATWAA
                     GIKLQNNSTIENIINTGSISSNAFGISVTGG"
BASE COUNT          454 a          164 c          214 g          347 t
ORIGIN      
        1 tagttttata ttatttttaa atataaacaa gaaaatataa atataaaagg aaagggaata
       61 tttatgaata aaactgcatt aactaaaaca tacacaaaag atatacaaaa ttcctgttta
      121 aattctaaaa agatagtttt atctttagct actatttctt ttttggcaag ttgtactcat
      181 gctacactta ctcctgaaat aaaaacttac gaagagacaa atagacatgc taaagctagg
      241 tcaggtcttc aatctagaaa ttcgaataat gagactataa ataatttaca aacttcaact
      301 aaaactataa gtggcaccgg caatactcta gttatagaaa gtagtggaac tattactatt
      361 tctaatggtg ggcaacaagc agtaaacttt caaccaaatt cttcaacttc taccttttta
      421 aataaaggaa ctcttatagg tggaaataat actgctagtg ttcaactagg agcaaatgga
      481 aataacggtg ttaacataga aacctttgat aatcaaggta tcataggcaa tggttcttct
      541 aaatttggag taacagtttg ggggggggta aagataactc taaatctata atcaataatt
      601 ttagtaatag tggaactatt cactctaatg ctggtgaaag tatttatttt ggtaacgcca
      661 atatatcaag ttttgttaat agtgggacta ttaagagtaa acaaggcgca ggagtaaata
      721 tatctcaagg aacaagtata gggaatttta acaatagcgg aactattgaa ggcaagaagg
      781 tgggtgtacg agttaattca acaataaata ccttcgtcaa tagcggttta attactataa
      841 ctgtaaaggg cgtgcattgg agcgatggaa tagggataaa tgctaatgta aaaacattaa
      901 aaaatacggg aaccatacaa ggatttagtg cacctataaa atcatcaggt ggaactatag
      961 aaacattgat caatgaaggc actatgaagg gtgaaagtat tggtatttac atgagcggag
     1021 gtcttgttaa aactcttata aatagcggta ccattaatca aaacaattcg gcaacttggg
     1081 ctgctggtat aaaactccaa aataacagta ccatagaaaa tatcatcaac acaggatcta
     1141 tcagttctaa tgcttttgga atatctgtaa ctggtggta
//
LOCUS       DARBBO010000152         1174 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.153, whole genome shotgun sequence.
ACCESSION   DARBBO010000152 DARBBO010000000
VERSION     DARBBO010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1174)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.153"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>1174
                     /locus_tag="SB854_001682"
     CDS             <1..>1174
                     /locus_tag="SB854_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HEG0957647.1"
                     /translation="NFAKVFLEKLGKSLVNTKFENLNIEDIKSVETEACIKDNRRIDI
                     LITLSDKRYIIIENKIYAKDQKNQLKDYINFVRKNIKNIKDCYKNILTIYLHQDECAS
                     PSDYSLGNFTIKTNLIKDKNENNVSYYLKMDYIWIKEWIDECIKIYEEKSTKDQKFIL
                     DIQNIIFTLNQYKSILQWYMTDEYTQRDDVLEFIFQNNIKMQNLKNAMILYRYNKNKS
                     ELKNLNEENYKKAKDIIQHKWSNICEYIIEEFFDSFEHKEIKIGDITFIGNKIEENRV
                     NHGVFIFYPIDYKNESIYPCIYIYFKKKYYDIIGLTFEISNDDEEDIENEKYKECLKL
                     FKDVKEENVRKYQNHYYCDKLINNEKLEGEYAFIYWLIENQNSKKDFIQILNDFFIQ"
BASE COUNT          548 a           82 c          163 g          381 t
ORIGIN      
        1 aattttgcaa aggtattttt agaaaaactt ggtaagagtt tagtaaatac gaaatttgaa
       61 aatttaaaca tagaagatat aaaaagcgta gaaacagaag cctgcataaa agataataga
      121 aggatagata ttttaataac attaagtgat aaaagatata ttataataga aaataaaatt
      181 tatgcaaaag atcaaaaaaa tcaattgaaa gattatatta attttgtaag aaaaaatatc
      241 aaaaatataa aagattgtta taaaaacata ttgactatat atttgcatca agatgagtgt
      301 gctagtccta gtgattatag tttgggaaat tttacaataa agacaaattt gattaaagat
      361 aaaaatgaaa ataatgttag ctattatttg aagatggatt atatatggat taaggaatgg
      421 attgatgagt gtataaaaat atatgaagaa aaatcaacca aagatcaaaa atttattctt
      481 gatatacaaa acattatttt tactctaaat caatacaaaa gtattttaca atggtatatg
      541 acagatgagt atactcaaag agatgatgta ctagaattta tttttcaaaa caatataaaa
      601 atgcaaaatt taaaaaatgc gatgatttta tatagatata acaaaaacaa atcagagctt
      661 aaaaatttaa atgaagaaaa ctataagaaa gctaaagata ttatccagca taaatggagc
      721 aacatctgcg aatatataat agaagaattt tttgatagtt ttgaacacaa ggaaattaaa
      781 ataggtgata taacttttat cggcaataaa atagaagaaa atcgtgttaa tcatggtgtg
      841 tttatatttt atcctattga ttataagaat gaaagcatat atccatgtat atatatttat
      901 tttaaaaaaa aatactatga tattattggt ttgacatttg aaatttcaaa tgatgatgaa
      961 gaagatatag aaaatgaaaa atataaagaa tgtttaaaat tatttaaaga tgtaaaagaa
     1021 gaaaatgtta gaaaatatca aaatcactat tattgtgata aattaataaa caatgaaaaa
     1081 ttagaaggag aatacgcttt tatttattgg ttgattgaaa atcaaaattc taaaaaagat
     1141 tttattcaaa ttttaaatga tttttttatt caaa
//
LOCUS       DARBBO010000153         1152 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.154, whole genome shotgun sequence.
ACCESSION   DARBBO010000153 DARBBO010000000
VERSION     DARBBO010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1152)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1152)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.154"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..>1152)
                     /locus_tag="SB854_001683"
     CDS             complement(<1..>1152)
                     /locus_tag="SB854_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEG0957648.1"
                     /translation="QKAFRDILTKITKIYDKNKFIKQNEHQFEDEFISKVLEILGWCF
                     VRQDEKIIQGKLEKPDFLLFSNDKLKSKYENLDKETKKSSNDFTIILESKAYNIEIDN
                     KKVKDNPHFQILRYLGNLKKNYGFLTNGRFWRFYDNSILNSNKVFYEINLEKIIEDQN
                     IEAFAYFYSVFSAFNFTEKEDHLEITLQNNKLSKIKIEDDLKSIIYGTNGNESLFEFI
                     GSRIYNKTKADLKLIYENSLYFIFRLLFIAYFEDKFEIILEKHKYFKSKISLRTLLEN
                     LQEDESSSGGFGELENIFNIYNKGKGNFDMPVFNGGLFDESKTALLSTPKIFNDKDLK
                     FILNQLLNFKDKNLSFKRDYKTLSVEHLGTIYEGLLSYFFEIANEDIYYV"
BASE COUNT          379 a          153 c          133 g          487 t
ORIGIN      
        1 acatagtaaa tatcttcatt tgctatttca aaaaaataag aaagcaagcc ttcataaatc
       61 gtgcctaaat gttctacact taaagttttg taatctcttt taaagcttag atttttatct
      121 ttaaaattta ataattggtt taaaatgaat tttaaatctt tatcattaaa gatttttggt
      181 gtgcttaaaa gagcggtttt actctcatca aacaacccac cattgaaaac aggcatatca
      241 aaattgcctt tgcctttgtt gtaaatgttg aaaatatttt caagttctcc aaaaccacca
      301 cttgagcttt catcctcttg taaattttca agtaaggttc taagactgat tttactttta
      361 aaatacttat gtttttctag tataatttca aatttatcct caaaataagc aataaataaa
      421 agtctaaaga taaaatataa agaattttca tagattagtt ttaaatccgc ctttgtttta
      481 ttgtaaattc tagagcctat gaattcaaat aaagattcat ttccattggt tccgtaaatg
      541 atagatttta aatcatcttc tattttgatt tttgaaagtt tattgttttg tagagttatt
      601 tctaaatgat cttctttttc tgtgaaatta aaagcgctaa atacactata aaaatacgca
      661 aaagcttcaa tattttgatc ttcaatgatt ttttctagat tgatttcgta aaaaactttg
      721 tttgaattca gtatagaatt atcataaaaa cgccaaaatc taccattggt taaaaaacca
      781 taatttttct taagattgcc tagatatctt agaatttgaa agtgagggtt gtcttttact
      841 tttttattgt ctatttctat attataagct tttgactcta aaatgattgt gaaatcattg
      901 cttgattttt ttgtttcttt gtctaaattt tcgtattttg attttaattt gtcattgcta
      961 aaaagtagaa aatcaggttt ttccaatttt ccttgtatga ttttttcatc ttgtcttaca
     1021 aagcaccacc ctaaaatttc taatactttt gatataaatt catcttcaaa ttgatgttcg
     1081 ttttgtttta taaatttatt tttgtcgtaa atttttgtaa ttttagttaa aatatctcta
     1141 aaggcttttt ga
//
LOCUS       DARBBO010000154         1144 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.155, whole genome shotgun sequence.
ACCESSION   DARBBO010000154 DARBBO010000000
VERSION     DARBBO010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1144)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1144)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1144
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.155"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>1144
                     /locus_tag="SB854_001684"
     CDS             <1..>1144
                     /locus_tag="SB854_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0957649.1"
                     /translation="TIDLSEELCSGKIYLVDIEEERVDIQLLILFDMKDMFEYLSLYE
                     MFVNNVYYKKFYEDIWHKADELCEKNIEVIVRNLNSSLHIAFECYSHLLQNIPSMLES
                     IPFQRILNERKNKFENAIVVSAGPSLAKQLPLLKAYQDKAVIFCADGALSMLEKKGIV
                     PDYVTNLDFTDLAMKFFQNKENKTSLNVLSCATHPSLVHFLDNKSVVLRDDPLYQRFN
                     LNDFGYIDTGTHVSHFSYTLALALGFKNIIMIGQDLAFDEEGNSHSKGFDFGEKFSGE
                     ENIDKLKVPAYAGKGEVLTHITWNDYRIKLEYLFACNEQKAKFYNATEGGARINFTEE
                     LSFKECCEKLLTKEKPKFELPKSLTKNRSDKLLAKFKEKIQKDQENA"
BASE COUNT          432 a          146 c          188 g          378 t
ORIGIN      
        1 acgatagatt tgagtgaaga gctttgtagt ggaaaaattt atcttgtgga tatcgaagaa
       61 gaaagagtgg atattcaact acttatactt tttgatatga aagatatgtt tgagtactta
      121 agtttatatg aaatgtttgt aaataatgtt tattacaaaa agttttatga agatatttgg
      181 cataaagcag atgaactttg cgagaaaaat atagaagtaa tagtaagaaa tttaaattct
      241 agcctacata tcgcttttga gtgttattct catcttttac aaaacatccc ctctatgctt
      301 gaaagcattc cttttcaaag aatcttaaac gaaagaaaaa acaaattcga aaatgctata
      361 gtagtttctg caggacctag tttagctaaa caacttcctt tacttaaagc ttatcaagat
      421 aaagcagtga tattttgtgc tgatggagct ttaagtatgc ttgagaaaaa aggcatagtg
      481 cctgattatg ttacgaattt agattttact gatctagcaa tgaaattttt tcaaaataaa
      541 gaaaataaaa cttctttaaa tgtactttca tgtgctactc atcctagttt ggttcatttt
      601 ttagataata aaagtgtagt tttaagagat gaccctttat atcaacgctt caatcttaat
      661 gactttggct atatcgatac aggtactcat gtaagtcatt tttcttatac cttagcttta
      721 gctttaggat ttaaaaatat catcatgata ggacaagatt tagcctttga tgaagaagga
      781 aattcacact caaaaggttt tgattttgga gagaaattta gtggtgaaga aaatatagat
      841 aaacttaaag tccctgccta tgcaggtaaa ggtgaagttt taactcatat aacttggaat
      901 gattatcgta taaaattaga ataccttttt gcttgcaacg aacaaaaagc aaagttttac
      961 aatgctactg aaggtggagc aaggattaat ttcactgaag aactttcttt taaagaatgt
     1021 tgtgaaaaac tccttacaaa agaaaaacct aaatttgaac ttccaaaaag tttaactaaa
     1081 aatagaagtg ataaactact agctaaattc aaagaaaaaa tacaaaaaga tcaagaaaat
     1141 gcta
//
LOCUS       DARBBO010000155         1140 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.156, whole genome shotgun sequence.
ACCESSION   DARBBO010000155 DARBBO010000000
VERSION     DARBBO010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1140)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1140)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.156"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            803..1140
                     /locus_tag="SB854_001685"
                     /pseudo
     CDS             803..1140
                     /locus_tag="SB854_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855892.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus and C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
BASE COUNT          489 a          124 c          162 g          365 t
ORIGIN      
        1 taattccgta gatacctcaa aagagcagtt taatttatgg catcaagaaa tagattatta
       61 tcctacaatg aatgaaaaaa aaatttctag tcaagatcaa aaagatatta ttgatttata
      121 tcaacctaaa aaaatattaa ttgaaaaact agaaaaaggt gtttatggtt atcctatcac
      181 tttaaataaa gtttctaatt taagaaccac ttatgaaaaa gaaaaaggtt ttaaatatga
      241 tgcattatta tatacacggt gtgatataat gtttaaaaat cctattagaa ttttaggata
      301 tattgattat tggaaaaata atccaactct tgatacaaaa ataatttggt gtggtcactc
      361 ttctttttca agaatggcta tagctgatcc tagaattgta acagagtgtg atattttttg
      421 gtttactaaa tataatataa atcccaatga tatgtatcat aattgtccta atgatatcaa
      481 taaattttta tggataggaa ttgattatct tttaaacaga gattttaaaa tatggagaga
      541 gcaatatatc ggtgattata aagcgaatga attgatttat ataagaaaaa atgttttaat
      601 gcaaaaagat aacgaaatta aaaaattaaa atcaaacaat aagcttctag aggataaatg
      661 gacaaaaaaa caaatcttag aattagccaa tctagaacag gatttaatta ttaaaaaatt
      721 agaaagtaaa aaacttgcta aatctttagg tctaaaaatg agtataatta accctaaaat
      781 tacttttatt caagctaatt cagccaaagt tcgtattcaa aaccatctat cttataaact
      841 aggacaagct ttgatagaaa attcaaaaag tatactagga tatataagaa tgccttatgt
      901 attatcttat ataaaagaca aacataaatt tgaacaaaaa gcctatgaag aaaagataaa
      961 agaaaatcca aatttggctt taccaccttt agaaacttat cctgattata atgaagcttt
     1021 aaaagaaaaa gaatgtttta cttataaatt aggagaagct ttaatgcaag ctaataagaa
     1081 ttggtatggg gcggggtata tcaaatttat attcaaagat gtgcctaggt tgaagagaaa
//
LOCUS       DARBBO010000156         1107 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.157, whole genome shotgun sequence.
ACCESSION   DARBBO010000156 DARBBO010000000
VERSION     DARBBO010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.157"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..894
                     /locus_tag="SB854_001686"
     CDS             <1..894
                     /locus_tag="SB854_001686"
                     /inference="COORDINATES: protein motif:HMM:NF024352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HEG0957650.1"
                     /translation="SNQEIFSKINQHISVKDIFSKIFQGLATSKDSVYFLKDCQENKN
                     SVKGYSKELDKEVEIEKEILKPLLMGDSFHRYEKPISNSMVLFPYYRQDNTDVKKMCL
                     YDENELKSKFPKAWEYLKECESILRARENGRLSSDDLWWRYIYPKNQTLFNKEKLLCP
                     DICNNTHFVLDNLGEFYFTTTIYGYVRNEEYKNLDYKYLMAVLNSSLTWWFLQKTSVV
                     MRGGFYRIKPAYIEKFCIPKINSKNQKIADELINSVDEILKAKEQDKNANTQELENKI
                     NSLVYKLYNLTEEEIKIIEGK"
     gene            894..>1107
                     /locus_tag="SB854_001687"
     CDS             894..>1107
                     /locus_tag="SB854_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002797680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957651.1"
                     /translation="MKRNIYEIELEIPNSGIFIMSLENENLIISLNVVKFIEINAEKI
                     ATLDGKLDAGELAKPLNPYIIYKTLEE"
BASE COUNT          459 a          114 c          178 g          356 t
ORIGIN      
        1 tcaaatcaag aaattttttc aaaaatcaat caacatatat ctgtaaaaga tatcttttct
       61 aagatttttc aaggtttggc tacaagcaaa gatagtgttt attttttaaa agattgtcaa
      121 gaaaataaaa attctgttaa agggtattct aaagagcttg ataaagaagt ggaaatagaa
      181 aaagaaattt taaaaccact tttaatgggt gatagttttc atagatatga aaaacctatt
      241 tcaaattcaa tggttttatt tccttattat agacaagata atacagatgt taaaaaaatg
      301 tgtctttatg atgaaaatga gcttaaatcc aaatttccaa aggcttggga gtatttgaaa
      361 gaatgtgaaa gtattttgag ggctagagaa aatggaagat tgtctagtga tgatttatgg
      421 tggaggtata tttatccaaa aaatcaaaca ttatttaata aggaaaagtt gctttgtccc
      481 gatatttgca ataatacgca ttttgtttta gataatctcg gagaatttta ttttactaca
      541 acaatttatg gttatgttag aaacgaagaa tataaaaatt tagattataa atatttaatg
      601 gctgttttaa attcatcgtt aacttggtgg tttttacaaa aaactagcgt tgtgatgagg
      661 ggtggatttt ataggattaa accagcttat atagaaaaat tttgcatacc aaaaataaat
      721 tctaaaaatc aaaaaatagc cgatgagctt ataaattcag tcgatgaaat tttaaaagcc
      781 aaagaacaag acaaaaacgc aaacacccaa gaactagaaa acaaaatcaa ttctttggtt
      841 tataaacttt acaatctcac cgaagaagaa ataaaaatca tagaagggaa ataatgaaaa
      901 gaaatatata tgaaatcgaa ctagagatac caaatagcgg tatttttata atgagtttgg
      961 aaaatgaaaa tttaattatt tctttaaatg ttgtgaaatt tatagaaatc aatgcagaaa
     1021 aaattgcaac tttagatgga aagttagatg ctggagaatt ggctaaacca ttaaatccgt
     1081 atattatcta taaaacttta gaagaaa
//
LOCUS       DARBBO010000157         1082 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.158, whole genome shotgun sequence.
ACCESSION   DARBBO010000157 DARBBO010000000
VERSION     DARBBO010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1082)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.158"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            28..1082
                     /locus_tag="SB854_001688"
                     /pseudo
     CDS             28..1082
                     /locus_tag="SB854_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
BASE COUNT          383 a          146 c          188 g          365 t
ORIGIN      
        1 ataatattag aaaggagcgc ttaaattatg aaaagcgtaa aattgaaggt ttcattgatt
       61 gcaaatttaa tcgcagtagt gtgtttgata attttaggtg ttgtaacatt tatgtttgta
      121 aagcaagcaa tttttcatga agttgtaaaa gctgaaacaa actatgttaa aacagcgaaa
      181 aattctatgg agtcttttaa ggcaagaaat tctttagctc ttgaaagttt agctaaaagt
      241 attttaaagc atcctgtaga acagttggat aaccaagatg ctttaatgca ttatgttgga
      301 aaagatttaa agaattttag agatgctgga agattcttag cagtttatat attgctcaac
      361 caaatggcga acttgttgta agcgatccag actctgatgc taaaaattta gattttggaa
      421 cttatggaaa agctgataat tatgatgcta gaacaagaga gtattatata gaagcagtta
      481 aaacaaataa actttatatt accccatctt atattgatgt aactacaaat ttaccttgct
      541 ttacatattc tattccgctt tataaagatg gtaaatttat aggggttttg gctgtagata
      601 ttcttgcggc agatttgcaa gctgaatttg aaaatttacc aggtagaact tttgtatttg
      661 atgaagaaaa taaagtattt gtttctacag acaaagctct tttacaaaaa ggttatgata
      721 ttagtgcaat tgcaaatctt gctaaaacta aagaggatct tgaacctttt gagtatacta
      781 gaccaaaaga tggtaatgaa agatttgctg tatgcacaaa ggtttctgga atttatactg
      841 cttgcgttgg agagccaata gaacaaatag aagctccagt ttataaaact gcgattgtta
      901 tttttacaag tattattagc gtcatcctcc tttatttcat cgtatcaaaa tacctctccc
      961 cacttgcagc tatccaaaca ggtttaactt cattctttga ttttatcaac tataaaacaa
     1021 aaaatgtttc tactatagaa gtaaaaagca atgatgaatt tggacaaatc tcaagtgcta
     1081 tc
//
LOCUS       DARBBO010000158         1080 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.159, whole genome shotgun sequence.
ACCESSION   DARBBO010000158 DARBBO010000000
VERSION     DARBBO010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1080)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1080)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.159"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..886
                     /locus_tag="SB854_001689"
     CDS             <1..886
                     /locus_tag="SB854_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEG0957652.1"
                     /translation="LQRIINFEPKQSKKIKIESVLKDQDIFELIEPSTDINDIIMPEN
                     TKELLENILKQQDKKVLERLHSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKK
                     SVLSFDCSKILSKWVGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVDGS
                     SGSDKMHNQMQNIFLEQIERFSGVIIATTNFLESLDSAFSRRFDYKIEFKKPDFKDRL
                     KIWEKFLPKKALFEKDFDINILSNYELSGAQILMVVKNTALKVAVSKDGVFKMQDFIE
                     SIQKELNSSFDKSKIVGF"
     gene            complement(851..>1080)
                     /locus_tag="SB854_001690"
     CDS             complement(851..>1080)
                     /locus_tag="SB854_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HEG0957653.1"
                     /translation="FLMLLSSFKIFKKLSKIRKLGYLCLVLASYHYFLTPKIPMLWEW
                     SALIIALFYFIVRYTKTLKKLKSNNLTFIKT"
BASE COUNT          442 a          112 c          174 g          352 t
ORIGIN      
        1 tttacaaaga attataaatt ttgaaccaaa acaaagtaaa aaaatcaaaa ttgaaagtgt
       61 tttaaaagat caagatattt tcgagcttat agaaccaagc actgacatca atgatattat
      121 tatgcctgaa aatacaaaag agcttttaga aaatatttta aaacaacaag ataaaaaagt
      181 cctagaaaga cttcattctt ggggtataaa gagtaataaa aatatagaag ctaaaattat
      241 tttttatggt cctgctggta ctggaaaaac tatgtcagct ttagctatgg ctaaatcaat
      301 gaaaaaatct gttcttagtt ttgactgttc taaaattttg agcaaatggg ttggagagag
      361 tgagcaaaat gtaagaaaaa tttttgatac ttataaaaat atcgtgcaaa cttgcaaaca
      421 aagtcctatt ttacttctca atgaagccga tcagttttta agtacgcgtg tagatggaag
      481 tagtggtagt gataaaatgc ataatcaaat gcaaaatata tttttagagc aaatcgagcg
      541 ttttagtggt gtgattatcg ctacgacaaa ttttttagaa agcttagata gtgcattttc
      601 aagaagattt gattataaga tagaatttaa aaaacctgat tttaaagata ggcttaaaat
      661 ttgggaaaaa tttctaccta aaaaagcatt atttgaaaaa gattttgata taaatatttt
      721 atcaaattat gaattaagtg gagcacaaat tttaatggtg gtgaagaata cagctttgaa
      781 agtagctgta tcaaaagatg gggtttttaa aatgcaagat tttatagaaa gtatacaaaa
      841 agaattaaat tcaagttttg ataaaagtaa gattgttgga ttttaacttt tttaatgttt
      901 ttgtatagcg aactataaaa taaaacaaag ctataattaa agcactccat tcccaaagca
      961 taggaatttt tggggttaaa aaataatgat aacttgccaa aactaagcat aaatatccta
     1021 gttttctgat tttactaagt tttttaaaga ttttaaaaga acttaaaagc attaaaaata
//
LOCUS       DARBBO010000159         1073 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.160, whole genome shotgun sequence.
ACCESSION   DARBBO010000159 DARBBO010000000
VERSION     DARBBO010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1073)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.160"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            121..>1073
                     /locus_tag="SB854_001691"
     CDS             121..>1073
                     /locus_tag="SB854_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HEG0957654.1"
                     /translation="MLKDTQLKTMQDVDAFFKSYAMSKRNGIQILANELTNRPDMSNE
                     ELINLIKVIKKVNDYDLVYVGFDNTGKNYQSDDQILDLSKGYDTKNRPWYKAAKEAKK
                     LIVTEPYKSAASGEVGLTYAAPFYDRNGNFRGVVGGDYDLANFSTNVLTVGKSDNTFT
                     EVLDSEGTILFNDEVAKILTKTELSINIANAIKANPALIDPRNQDTLFTTKDHQGVDY
                     AIMCNSAFNPLFRICTITENKVYTEAVNSILMKQVIVGIIAIIIALILIRFLISRSLS
                     PLAAIQTGLTSFFDFINYKTKNVSTIEVKSNDEFGQISNAI"
BASE COUNT          400 a          163 c          170 g          340 t
ORIGIN      
        1 tcaggcaaat ccgttggaat ttcagccaag cttacgctat gggttggaat tttagttgta
       61 ttaattttag caatcacaag tgctattagt tactttgatt cgagaaacaa tacatatgaa
      121 ttgctaaaag acactcagtt aaaaactatg caagatgtgg atgctttctt taaaagctat
      181 gctatgtcaa aaagaaatgg tattcaaata ctagccaatg agctaacaaa tcgtcctgat
      241 atgagcaatg aagagctaat caatcttatc aaagtaatta aaaaagttaa tgactacgat
      301 ctagtttatg taggatttga taatacagga aaaaattatc aatctgatga tcaaatttta
      361 gatctatcaa aaggttatga tactaaaaat cgtccttggt ataaagctgc caaagaagca
      421 aaaaagctta tagtaacaga accttataaa tccgccgcta gcggagaggt tggtttaact
      481 tacgctgctc cattttatga tagaaatgga aattttagag gtgttgtagg tggagattat
      541 gatctagcaa atttttcaac caatgtttta actgtaggaa aatcagacaa tacctttact
      601 gaagtacttg attcagaagg aacaatactt tttaatgatg aagttgctaa aatactaaca
      661 aaaacagaat taagtatcaa tatcgccaat gcaatcaaag caaatcctgc tcttattgat
      721 ccaagaaacc aagatacttt atttaccact aaagatcacc aaggcgtaga ttatgcgatt
      781 atgtgtaatt ctgcttttaa tcctttattt agaatttgta caataacaga aaacaaagtt
      841 tataccgaag ctgttaattc tattttaatg aaacaagtta tagttggtat tatagctata
      901 atcatagctt taatcttgat tagattttta atcagcagaa gtctctcccc acttgcagct
      961 atccaaacag gtttaacttc attctttgat tttatcaact ataaaacaaa aaatgtttct
     1021 actatagaag taaaaagcaa tgatgaattt ggacaaatct caaatgctat caa
//
LOCUS       DARBBO010000160         1018 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.161, whole genome shotgun sequence.
ACCESSION   DARBBO010000160 DARBBO010000000
VERSION     DARBBO010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.161"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>1018
                     /locus_tag="SB854_001692"
     CDS             <1..>1018
                     /locus_tag="SB854_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0957655.1"
                     /translation="IFHILDFSNELQNARLMVLENDKLQTQDYTELCSFKPFFQFSRI
                     YFLELMSHYYERFHEDVLELNKKLAETFKNIILRNGNDPLDALQGIEQFVYNLPSMIT
                     HPSYKELLSKRKGISDTAIIVSTGPSLTKQLPLLKKYANKATIFCADSSYPILAKHGI
                     KPDYVCMLERTEITAEFFNHDFGEFDKDIVFVCAGVVHPKAIEYLKGRNLVITQKVLA
                     FPYYINLKDFSYAAVGFSVAHTLSYLATYLSHKNIIFIGQDLAYAENGNSHPDDYQNS
                     ASYESQMYEHILTKAYGEKEEVKTHSIWLLFKNWFENEMIPNTRKMGITTYNCTEGGA
                     RIEGT"
BASE COUNT          353 a          138 c          165 g          362 t
ORIGIN      
        1 tgatatttca tatcttggat ttttcaaatg aattacaaaa tgcaagattg atggttttgg
       61 aaaatgataa attacaaact caagattata ctgaactttg ttcttttaaa cctttctttc
      121 aattttctag aatttatttt ttagaactga tgagtcatta ttatgaaaga tttcatgaag
      181 atgttttgga gttaaataag aaattagcag aaacttttaa aaatatcatt ttaagaaatg
      241 gtaatgatcc tcttgatgct cttcaaggta tagagcaatt tgtctataat cttccttcaa
      301 tgatcactca tcctagttat aaagaattac tttctaaaag aaagggtata agtgatacag
      361 ctattattgt ttctacagga ccatctctta ctaaacaact tcctttatta aaaaaatatg
      421 ctaataaagc tacaattttt tgtgcagatt cttcttatcc tattttagct aaacatggta
      481 taaagcctga ttatgtttgt atgctagaaa gaactgaaat tactgctgag ttttttaatc
      541 atgattttgg ggaatttgat aaggatattg tgtttgtttg cgcaggggtt gttcatccaa
      601 aggcgattga gtatttaaag ggtagaaatt tagtcataac tcaaaaagtt cttgcttttc
      661 catattatat aaatcttaaa gatttttctt atgctgccgt aggatttagc gttgcacata
      721 cattatctta tctagcaact tatctaagtc ataaaaacat catttttata ggacaggatt
      781 tagcttatgc tgaaaatggc aattctcatc ctgatgatta tcaaaattca gctagctatg
      841 aaagtcaaat gtatgagcac attttaacca aagcttatgg cgagaaagaa gaagttaaaa
      901 ctcatagtat atggctttta tttaaaaatt ggtttgaaaa tgaaatgatt ccaaatacta
      961 gaaaaatggg tatcaccacc tacaactgca ccgaaggtgg agcaaggata gaaggaac
//
LOCUS       DARBBO010000161          991 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.162, whole genome shotgun sequence.
ACCESSION   DARBBO010000161 DARBBO010000000
VERSION     DARBBO010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.162"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..>991)
                     /locus_tag="SB854_001693"
     CDS             complement(<1..>991)
                     /locus_tag="SB854_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG0957656.1"
                     /translation="QSSKIGLTRFETGGRISSSGEVQFTLKNYNGIDDFQFQKVVIST
                     SVGTGLGALADEINKNADKTGVRATFTVETRGIAAVRAGATSDDFAINGVKIGKVDYK
                     DGDANGALVAAINSVKDTTGVEASIDANGQLLLTSREGRGIKIDGNIGGGAFINADMK
                     ENYGRLSLVKNDGKDILISGSNLSSAGFGATQFISQASVSLRESKGRFDANIADAMGF
                     GSANKGVVLGGYSSVSVYMSSTGSGFSSGSGYSVGSGKNYSTGFANAIAISAASQLST
                     VYNVSAGSGFSSGSTLSQFATMKTTAFGVKDETAGVTTLKGAMAVMDIAETAIT"
BASE COUNT          315 a          225 c          147 g          304 t
ORIGIN      
        1 gttatagctg tttcagctat atccatcaca gccatagcac ctttaagtgt ggtaacacct
       61 gctgtttcat cttttactcc aaaagcagtt gttttcatag ttgcaaactg agaaagtgtt
      121 gaaccacttg aaaaacctga gcctgcagaa acattatata ccgtagaaag ttgcgaagca
      181 gctgaaatag ctatagcgtt tgcaaaacct gtggaataat ttttaccgct acctacagaa
      241 taacctgaac ctgaagaaaa tccacttcct gtgctactca tatagacact aacagaagaa
      301 taaccaccta acacaactcc tttgtttgca gaaccaaatc ccatagcatc agcgatatta
      361 gcatcaaatc ttccttttga ctctcttaaa gaaacagaag cttgagagat aaattgagtt
      421 gcaccaaagc ctgcagaaga aagattgcta ccgctgatta aaatatcttt accatcattt
      481 ttaactaaag acaagcggcc atagttttct ttcatatcag cattgataaa ggcacctcca
      541 cctatattac catcgatttt aatccctcta ccttctcttg aagtaagtaa aagttgtcca
      601 ttagcatcga tcgaagcttc aactccagtg gtatctttaa ccgaattgat tgcagcaact
      661 aaggctccat tagcatcacc atctttgtaa tctactttac cgatttttac cccattgata
      721 gcaaagtcat ctgaagtagc tcctgctcta actgcagcta tacctctagt ttctactgta
      781 aaagtagctc taacacctgt tttatcagca tttttattga tctcatctgc taaagctcca
      841 agtcctgttc caactgaagt tgaaatcaca actttttgaa actgaaaatc atctatacca
      901 ttgtaatttt taagagtaaa ttgcacttca ccactagatg aaattcttcc tcctgtttca
      961 aagcgtgtta aacctatctt agaagattga g
//
LOCUS       DARBBO010000162          989 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.163, whole genome shotgun sequence.
ACCESSION   DARBBO010000162 DARBBO010000000
VERSION     DARBBO010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.163"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..544
                     /locus_tag="SB854_001694"
     CDS             <1..544
                     /locus_tag="SB854_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019260274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sugar transferase"
                     /protein_id="HEG0957657.1"
                     /translation="FDGIDYCDIFYFQKGILPHSWFFGKNLDLDYKQDLNLSEQKLYQ
                     MKKYFLTLKKDEKKVILDFLSQNNDKHDLYEMLYYLINELYSFEHEGIFYQIIIDKEK
                     MLMAQKHDKSFYPLGSFVYKPYLYELRNIRPFLFLMKILGLEYLGAIISHTKFYRLAR
                     KLFFNPKGFFEDLRAKKARN"
     gene            546..>989
                     /locus_tag="SB854_001695"
     CDS             546..>989
                     /locus_tag="SB854_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEG0957658.1"
                     /translation="MLLKAKYKKNIFFFFKSLLISMQNFLKQFKPKKYKAYNKYVIVS
                     AVYNVEKYLDDFFKSIINQRLDFKSNIYLICVDDGSTDNSANIIKKYQKKYPKNITYL
                     YKENGGQASSRNLGLKYLKENDLNIFWVTFTDPDDFLDRDYFYEVD"
BASE COUNT          375 a           90 c          144 g          380 t
ORIGIN      
        1 atttgatggt atagattatt gtgatatttt ttattttcaa aaaggaattt tgcctcattc
       61 ttggtttttt ggaaaaaatt tagatttaga ttataaacaa gatttaaatt taagcgagca
      121 aaaactttat caaatgaaaa aatatttctt aactttaaag aaggatgaaa aaaaagttat
      181 cttagatttt ttaagccaaa ataatgataa gcatgatttg tatgaaatgc tttattattt
      241 aattaacgag ctttatagtt ttgagcatga gggaattttt tatcaaatca tcattgataa
      301 agaaaaaatg ctgatggcgc aaaaacatga taaaagcttt tatcctttag gatcttttgt
      361 ttataaacct tatttgtatg agcttagaaa cataagacct tttttatttt tgatgaaaat
      421 tttaggtttg gagtatcttg gtgctattat ttcacatact aaattttatc gtttagcaag
      481 aaaattgttt tttaatccca agggtttttt tgaagattta agagctaaaa aggctagaaa
      541 ttgatatgtt gttaaaagca aagtataaaa aaaatatatt tttcttcttt aaaagtttgc
      601 taatttccat gcaaaatttt ttaaaacaat ttaaacctaa aaaatacaaa gcctataata
      661 aatatgtcat agtttcagcg gtttataatg tggaaaaata tttagatgat ttttttaagt
      721 ctataattaa tcaaagattg gattttaaaa gtaatattta tctaatttgc gttgatgatg
      781 gttctactga taattcagcc aatatcatta aaaaatatca aaaaaaatac ccaaaaaata
      841 ttacctatct atataaagaa aatggtggtc aggcaagttc gaggaattta ggtttaaaat
      901 atttaaaaga aaatgattta aatatttttt gggtaacctt tactgatcct gatgattttt
      961 tagataggga ttatttttat gaggtagat
//
LOCUS       DARBBO010000163          959 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.164, whole genome shotgun sequence.
ACCESSION   DARBBO010000163 DARBBO010000000
VERSION     DARBBO010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 959)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 959)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.164"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            38..>959
                     /locus_tag="SB854_001696"
     CDS             38..>959
                     /locus_tag="SB854_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic family protein"
                     /protein_id="HEG0957659.1"
                     /translation="MKEFIPQKLPLNIELNANIYSLIIKASRKLAELNGLNKSIPNPS
                     ILINALILQEAKDSSEIENIITTHDELFLSDVDENKLTRAAKEVKDYESALKKGYELL
                     KKEQLLKNAHILEIQKRLERNNAGFRKQSGTMLKNPITGEIKHIPPQNPNNIQELMGN
                     LELYINDDSLDEFDFLVKMAIIHYQFESIHPFYDGNGRTGRIINILYLVYKGLLDFPI
                     LYLSAYIVKNKDEYYKLLQKVRDEGDILKWIEYILKGIEQTAVKTIETIIKIEKMMSN
                     VGEILQNKTNFYSKDFVELLFSHPYTKIDFL"
BASE COUNT          404 a          101 c          148 g          306 t
ORIGIN      
        1 ttaaaatttt tagaaaaaat taacatattg gaaaattatg aaagaattta tacctcaaaa
       61 attgccttta aatatagaat taaatgcaaa tatttatagt cttatcatta aagcttctag
      121 aaaattagca gagttaaatg gacttaataa aagcatacca aatccaagta ttttaatcaa
      181 tgctttgatt ttgcaagaag caaaagattc gagtgagata gaaaatatca tcacaacaca
      241 tgatgaactt tttttatctg atgttgatga aaacaaactc acaagagcag caaaagaagt
      301 gaaagattat gaaagtgctt tgaaaaaagg atatgagtta ttaaaaaaag aacagttatt
      361 aaaaaatgca catattttag aaattcaaaa aagattagaa agaaataatg caggttttag
      421 aaaacaaagt ggaactatgc ttaaaaatcc tattacagga gaaatcaaac acataccacc
      481 ccaaaatcct aataatatac aagaacttat gggaaattta gaactataca ttaacgatga
      541 tagtttagat gaatttgatt ttttggtaaa gatggcaatt atacattatc aatttgaaag
      601 cattcatcct ttttatgatg gcaatggcag aacgggtagg attataaata tactttattt
      661 agtatataaa ggacttttgg attttcctat tttatatctt agtgcttata tagtaaaaaa
      721 taaagatgag tattataagc ttttgcaaaa agtgcgtgat gaaggggata ttttaaagtg
      781 gatagaatac atacttaaag gcatagagca aaccgctgta aaaactattg aaactattat
      841 taagatagaa aaaatgatgt ctaatgtagg tgaaatttta caaaataaaa cgaattttta
      901 tagtaaagat tttgtggagc ttttgttttc tcatccttat acaaagatag attttttaa
//
LOCUS       DARBBO010000164          910 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.165, whole genome shotgun sequence.
ACCESSION   DARBBO010000164 DARBBO010000000
VERSION     DARBBO010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 910)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.165"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            14..556
                     /locus_tag="SB854_001697"
     CDS             14..556
                     /locus_tag="SB854_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002815677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transferase"
                     /protein_id="HEG0957660.1"
                     /translation="MKNVIIIGAGGFTRELYSYLKDANYEIIGYIDIQENNFFDLKYL
                     GNEDNFDKKLIQKASFALGVGQINLRKKILVKLSKKSCNFITFIHPQSFVSKEAKIGQ
                     GVIVCPFVTINANSNIGDFVLCNIYSSIAHDCKVGEGSILSPYATLNGNSSIGKNCFL
                     ATRVSLLPCVNLEDNCIVSR"
     gene            629..>910
                     /locus_tag="SB854_001698"
     CDS             629..>910
                     /locus_tag="SB854_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002788892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase"
                     /protein_id="HEG0957661.1"
                     /translation="MKEINIIDFGLMGKQISALFYLLGYEIGVYNKSKLNIYEFEKQI
                     KLLQRKIDFSNFNAGKINIYQHIEDLKNSLTIESLNEDLNLKKEIMQILR"
BASE COUNT          370 a          107 c          139 g          294 t
ORIGIN      
        1 ttaggagaag tgcgtgaaaa atgtcatcat cataggagcg ggtggcttta ctagagagct
       61 ttattcttat ttaaaagatg caaattacga aattataggc tatattgata tacaagaaaa
      121 taattttttt gacttaaaat atctaggcaa tgaagataat ttcgataaaa agttgattca
      181 aaaagcatct tttgctttag gtgtaggaca aatcaattta agaaaaaaaa tccttgtaaa
      241 actttcaaaa aaatcatgta attttatcac ttttatacat cctcaatctt ttgtttcaaa
      301 agaagctaaa ataggacaag gggttatagt gtgtcctttt gtaaccatta atgctaattc
      361 aaatatagga gattttgtgc tttgtaatat ttattcaagc atagctcatg attgtaaagt
      421 aggagaagga agtattttaa gcccttatgc tacacttaat ggaaattcaa gcataggaaa
      481 aaattgtttt ttagctacta gagttagcct gttgccttgc gtaaacttag aagataactg
      541 catagtaagc aggtagtatt attagcaaaa actacacatc caatcaactt atttttcata
      601 aaaatataat taaaacaagg aaaaaacaat gaaagaaatt aatatcatag actttggttt
      661 aatgggtaag caaataagtg ctttatttta tttattaggc tatgaaatag gtgtttataa
      721 taaaagcaag ctcaatatat acgaatttga aaaacaaata aaacttctac aaagaaaaat
      781 agatttttct aattttaacg ccggaaaaat aaacatttac caacatatag aagatcttaa
      841 aaatagcttg actatagaaa gcttaaatga agatttaaat ttaaaaaaag aaatcatgca
      901 aattcttaga
//
LOCUS       DARBBO010000165          892 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.166, whole genome shotgun sequence.
ACCESSION   DARBBO010000165 DARBBO010000000
VERSION     DARBBO010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.166"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..150
                     /locus_tag="SB854_001699"
     CDS             <1..150
                     /locus_tag="SB854_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957662.1"
                     /translation="KDGFGTVVLDIDNLLYELKMKLQNHSFKNNFLIPKANSLEKVTQ
                     VILSI"
     gene            complement(139..>892)
                     /locus_tag="SB854_001700"
     CDS             complement(139..>892)
                     /locus_tag="SB854_001700"
                     /inference="COORDINATES: protein motif:HMM:NF022634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HEG0957663.1"
                     /translation="IMNFDLQTNLSDVFDRFYYFSSGENHPIRLNLKNFLSWPALHQE
                     MGFRTCVMEYSMLQNFDNILDVLYIDIKDIIGVDTKNTIQKICNFINISYNQEYNYSE
                     NIIGDLKIIFPLTLNVLEGIELLIIDSHSTFDTNCYKDITLTITNSNVFKILIKLSDN
                     LKLIDNIIKELKLYFFNFNKTLKQKLVQEKKIRIKEQQYIDIYKHDPYRRRKLQKMMS
                     YELTHIKQHRPDIVASWKYYQEFEKMCKELDG"
BASE COUNT          324 a          105 c           90 g          373 t
ORIGIN      
        1 aaagatggat ttggaactgt agttttagat atagataatc tattatatga attaaaaatg
       61 aagctacaaa accatagttt taaaaataat tttttaatcc ctaaggcaaa ttctttagaa
      121 aaagttacac aagtaatttt atccatctaa ctccttacac attttttcaa attcttgata
      181 gtatttccat gatgctacta tatctgggcg atgttgtttg atatgggtta attcataact
      241 catcattttt tgcaactttc ttcttctata gggatcatgt ttataaatat caatatattg
      301 ttgttcttta attcgtatct ttttttcttg aactaatttt tgctttaatg ttttattaaa
      361 attaaaaaaa tataatttca attcttttat aatattatct attaatttta aattatcaga
      421 taatttaatt aatattttaa atacatttga attagttatt gttaatgtaa tatctttata
      481 gcaatttgta tcaaatgtag aatgagaatc tataattaat agctctatac cttctaaaac
      541 gtttaaagtc agtggaaata taatttttaa atctcctata atattttcag aataattata
      601 ttcttgatta taagatatat ttataaaatt acatattttt tgaattgtgt tttttgtgtc
      661 tactcctata atatctttta tatcaatata aagaacatct aaaatattat caaaattttg
      721 tagcatcgaa tactccatta cacaagttct aaatcccatt tcttgatgta atgcaggcca
      781 agataaaaaa ttttttagat ttaatctaat tggatgattt tctccgctcg aaaaataata
      841 aaaacgatcg aaaacatcac ttaaattagt ttgtagatca aaattcataa tt
//
LOCUS       DARBBO010000166          890 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.167, whole genome shotgun sequence.
ACCESSION   DARBBO010000166 DARBBO010000000
VERSION     DARBBO010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 890)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.167"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..284
                     /locus_tag="SB854_001701"
     CDS             <1..284
                     /locus_tag="SB854_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEG0957664.1"
                     /translation="IYFYTFSSFWGSGGIYLEDIYIRENFRKKGYGKAVFKFLGEICK
                     KENLKRLDWVCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            281..889
                     /locus_tag="SB854_001702"
     CDS             281..889
                     /locus_tag="SB854_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HEG0957665.1"
                     /translation="MIRSLYYLKAMGFNFVDTHTNHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNVKLLILDVFGQKSENESGILLNSKKGEKLKHYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKNLGFKDYHIL
                     KGEVFAYKNFFIMPSYDLDFIEKNPSYEKNFIQDLKKIKGFL"
BASE COUNT          335 a           91 c          134 g          330 t
ORIGIN      
        1 tgatttattt ttatactttt tcgtcttttt ggggcagcgg tggaatttat cttgaagata
       61 tttatatacg agaaaatttt cgtaaaaaag gttatggaaa agctgtgttt aaatttttag
      121 gagaaatttg caaaaaagaa aatttaaaaa gactcgactg ggtttgctta aatgataata
      181 ttttaggtat taatttttat gaaagtttaa acgctaaaca tcttaaacaa tggagaaatt
      241 atcgtctaag tggagaaaat ttagaaaaat tgtgtgattt atgataagaa gtctttatta
      301 tttaaaagct atgggattta actttgttga tacacataca aaccactttg aacaagtaca
      361 aaattttcaa gaattaaaac aacttgtttc atcttgcacc ttatgccaat tttccaaaac
      421 aagaaaattt agtcttatgg aacctaagat aaaaaatgtc aaattgctaa ttcttgatgt
      481 ttttgggcaa aagagtgaaa atgaaagcgg aattttactt aattcaaaaa aaggtgaaaa
      541 attaaaacac tatatttatc aaattttagg gctttgcgat gaagattttt atttttctta
      601 tttatttaaa tgtttttgta atggaaaatt tgatgatttt tcgctacaat cttgcttacc
      661 atttttctgg aacgaactaa aactgattca acctgctttt ttgctttgtc taggagaata
      721 cacatttaaa aacttgggat ttaaagatta tcacatttta aaaggtgaag tttttgctta
      781 taaaaatttt ttcataatgc caagttatga tttagatttt atagaaaaaa atccaagtta
      841 tgaaaaaaat ttcatacaag atttaaaaaa aattaaagga tttttatgaa
//
LOCUS       DARBBO010000167          883 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.168, whole genome shotgun sequence.
ACCESSION   DARBBO010000167 DARBBO010000000
VERSION     DARBBO010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..883
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.168"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..>883)
                     /locus_tag="SB854_001703"
     CDS             complement(<1..>883)
                     /locus_tag="SB854_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002894130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEG0957666.1"
                     /translation="KRRAKNKSLWLFADMPFRADDNAEHLYRYVMKNHLKQNIVFVLR
                     KNSHDYKRLKKEGFKLVDPKSFKFKYLVFKADKLISSHIDRYFFEALGENTLKTKDFI
                     FLQHGITKDDLSSWLNQRKIDLFITGMQDEYDSIVGDFNRYKFTPKEVKLTGFPRWDA
                     LLKNNKINTKQILIMPTWREYIVGSYSKKLMKRRFNPKFYESEYFYRWGSFLHSKKLQ
                     ELHEKYNYKIVFNPHPQIRPYLEGFDLPNYIITPSVEISMQKLFCESSLMITDYSSVA
                     FEMAVLKKPVIYYQFDKN"
BASE COUNT          319 a          134 c           93 g          337 t
ORIGIN      
        1 catttttatc aaattgataa taaatcacgg gcttttttaa aacggccatc tcaaaagcca
       61 cgcttgaata atccgttatc attaaagatg attcacaaaa aagcttttgc atacttattt
      121 caacagaagg tgttataata taatttggta aatcaaaacc ttccaaataa ggtctaattt
      181 gtggatgagg attaaaaact attttgtaat tatatttttc atgtaattct tgtaattttt
      241 tactgtgtaa aaaagaaccc catctataaa aatactcact ttcataaaat tttggattaa
      301 atcttctttt cattaatttt ttactataag aacctactat atattctctc caagtaggca
      361 taataagaat ttgtttagtg tttattttat tatttttaag caaagcatcc catctaggaa
      421 atcctgttaa ttttacctct tttggagtaa atttataacg attaaaatct cctactatag
      481 aatcatattc atcttgcatt ccagtaataa ataaatcaat ttttctttga ttcaaccaag
      541 aagataaatc atcttttgtg atcccatgtt gtaaaaatat gaaatcttta gtctttaaag
      601 tattttcccc caaagcttca aaaaaatacc tatcaatatg tgatgaaata agtttatcag
      661 ccttaaaaac caaatattta aatttaaaac tttttggatc aacaagttta aaaccttctt
      721 tttttagcct tttataatca tgagaatttt ttctaagaac aaaaacaata ttttgtttaa
      781 gatgattttt cataacatag cgatataaat gttcagcatt atcatcagct ctaaaaggca
      841 tatcagcaaa aagccataat gatttattct tagctcttct ttt
//
LOCUS       DARBBO010000168          863 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.169, whole genome shotgun sequence.
ACCESSION   DARBBO010000168 DARBBO010000000
VERSION     DARBBO010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.169"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..>863)
                     /locus_tag="SB854_001704"
     CDS             complement(<1..>863)
                     /locus_tag="SB854_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEG0957667.1"
                     /translation="IILPTFNVEKYIAKALESCINQSFKDIEIIVVDDCGSDKSIDIA
                     KEYAKKDDRIKIIHNEENLKLLRARYEGVKVANSPYIMFLDPDDYLELNACEECVRIL
                     KNNEIDLLFFNAFVLENNNKIERKLNFQEKCYAKKDFLKELLKTKNLFWTVWAKVIKK
                     ELYLKAVGLISLENAKINMAEDVLLYYPLINISNTIFHLSKNLYNYQINNFSITKTLT
                     LQNIKTNIQEQDNVLYLLKKMQYNYNFNLTLLKLIEYFLLIEKYSLSSKRNVLCFKIN
                     IFFKKIQFKFY"
BASE COUNT          297 a          110 c           80 g          376 t
ORIGIN      
        1 ataaaattta aattggattt ttttaaaaaa aatattgatt ttaaaacaaa gaacatttcg
       61 cttgcttgat aatgagtatt tttcaattaa taaaaaatac tcaattaatt taagcaaagt
      121 taagttaaaa ttgtaattat attgcatctt ttttagaaga tatagaacat tatcttgttc
      181 ttgtatattt gtttttatat tttgcaatgt taatgttttg gttatagaga aattatttat
      241 ttgataattg tataaatttt tactcaagtg aaatatagta tttgaaatat ttatcaaagg
      301 gtagtataat aaaacatctt cagccatatt tattttagca ttttctagcg atattaaacc
      361 aacagccttg agatataatt ctttttttat gacttttgcc cacactgtcc aaaataaatt
      421 tttagttttt aatagttctt ttaaaaaatc tttttttgca taacattttt cttgaaaatt
      481 caactttctt tctattttat tgttattttc caatacaaat gcattaaaaa ataataaatc
      541 tatttcattg ttttttaaaa ttctcacaca ctcttcacaa gcattaagtt ctaaataatc
      601 atcaggatct aaaaacatta tataaggaga gtttgctact tttacacctt catatctagc
      661 tcttaaaagt tttaaatttt cttcattatg tatgattttt attctatcat cttttttggc
      721 atattcttta gctatatcta tacttttatc actcccacaa tcatccacta caattatttc
      781 tatatcttta aaactttgat tgatacaact ttctaaagct ttagctatat atttttctac
      841 attaaaagtt ggcaagatga ttg
//
LOCUS       DARBBO010000169          849 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.170, whole genome shotgun sequence.
ACCESSION   DARBBO010000169 DARBBO010000000
VERSION     DARBBO010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.170"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..788)
                     /locus_tag="SB854_001705"
     CDS             complement(<1..788)
                     /locus_tag="SB854_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957668.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNAPMT
                     PLFDRDKNQTSSSFLIIDDINGNLEIPLVKINDFWQDECKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFNDDFKEFHPVHKGVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTENQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICV"
BASE COUNT          323 a          133 c           85 g          308 t
ORIGIN      
        1 tctacgcaaa tattttcatc taaaaaatga ccttcaaaag gtagataaca aatttttagt
       61 tttccattat taagcaaaaa attattatta aattgtaaat tttgcagatc ttcaaaacac
      121 tcatcacatg tatttttaag cttctcatgt aaaagatttt gaaatttttg attttcagta
      181 ttatataaat catttagttt tacaaacgcg tgagcattaa tatcataaac aaaattattc
      241 aactctaaaa tagcacgact cataccatct tcataaaaat aataccattc ttcaaaacta
      301 atttttccat cttgtaaaaa aataggtttt tggcgaattt gttcaaaact aaatacaccc
      361 ttatgaacag gatgaaattc tttaaaatca tcattaaaac ctataaaatc aagactacgc
      421 tttatacgaa tgccatcttg cgtttcgaca agttctaaag tagttgttcc taaattttct
      481 ccttgaaaat ttttattatc atatgtaagc attttagaag aattgatttt atatttttta
      541 cactcatctt gccaaaaatc atttatctta acgagtggaa tctctaaatt tccatttata
      601 tcatcaataa ttaaaaaact agaacttgtt tgatttttat ccctgtcaaa aagtggagtc
      661 ataggcgcat tatcataaac tatggcaaaa atttctttat cctgcaaatg ataaaaatac
      721 aattcacctt tataaacttg cgctaaagct agatttacaa agcaaaatac cagtaaaaaa
      781 aatttcaaac tctatccttt aattttgaat atgcgttaag ataattttag tatgcgaaat
      841 tttatcaaa
//
LOCUS       DARBBO010000170          848 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.171, whole genome shotgun sequence.
ACCESSION   DARBBO010000170 DARBBO010000000
VERSION     DARBBO010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 848)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 848)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..848
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.171"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>848
                     /locus_tag="SB854_001706"
     CDS             <1..>848
                     /locus_tag="SB854_001706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HEG0957669.1"
                     /translation="ITNFYFIEQINKLNYANLSLMLDFLICSEEFEVEKPHKKLIDRA
                     FELAKIDSKDKVVMIGDSIADDLGIYDIKYYPYNCSKLLISISGKSGSGKSTLGSAIK
                     SVCDCMVIGADGYHKFDRYSTVWERITHYNPEGNNLIQLALDIKCIYQDIHDLCIPLY
                     DHVSGNFLTSDLIKTKDLDIVIIEGLHTLYQEVIGDFVKIKIFIDSDESDNQKIQRDI
                     KERGYKLDKIINSIQKREEDYLHYLYKQKDNANFLITIRNKKFKIELSGILKSANLQN
                     IYEGEY"
BASE COUNT          327 a           78 c          137 g          306 t
ORIGIN      
        1 attactaatt tttattttat tgaacaaatt aacaaactta attatgcaaa tttatcttta
       61 atgcttgatt ttttaatttg ctcagaagaa tttgaagtgg aaaagccaca taaaaaatta
      121 atagatagag cttttgaatt agctaaaatt gactcaaaag ataaggttgt aatgatagga
      181 gattctatag ctgatgatct aggtatttat gatataaagt attatcctta taattgttca
      241 aaattattaa tttctatatc tggtaaaagt ggatctggaa aatctacact tggtagtgct
      301 attaaatcgg tttgtgattg tatggtaatt ggtgctgatg gttaccataa atttgatagg
      361 tattctactg tatgggagag aataacacat tataatccag aggggaacaa tcttattcaa
      421 ttggcgttag atattaaatg tatatatcaa gatattcatg atttatgtat tccgctatat
      481 gatcatgttt ctggtaattt tttgacatca gatctgataa aaacaaagga tttggatatt
      541 gtaattattg aaggtttgca tactttatat caagaggtta ttggtgattt tgtaaaaatt
      601 aaaattttta tagattcaga tgaatctgac aatcaaaaaa tacaaagaga tataaaagaa
      661 cgtggatata aattagataa aattattaat tctatccaaa agcgagaaga agattatctg
      721 cattatttgt ataaacaaaa agataatgca aattttttaa ttacgataag aaataagaaa
      781 tttaaaatag aactttcagg tattttaaaa agtgctaact tgcaaaatat ttatgaaggt
      841 gaatatca
//
LOCUS       DARBBO010000171          845 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.172, whole genome shotgun sequence.
ACCESSION   DARBBO010000171 DARBBO010000000
VERSION     DARBBO010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 845)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.172"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            32..>845
                     /locus_tag="SB854_001707"
     CDS             32..>845
                     /locus_tag="SB854_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957670.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRSNLQVIKDVVISAENFFNNVIHLSVIGDKLIAATAKK
                     IIVVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFA"
BASE COUNT          317 a          129 c          120 g          279 t
ORIGIN      
        1 aaaacctcaa acattatcaa ggcattacac aatgaaaaaa atatttttaa cactattttg
       61 tttaatattt ctatgtgctt gtggcaccaa aagacaatat tttgaaccaa aacaaaccga
      121 tggagattta agtcataata gcaatttaaa aagtaaaatc gttgattgga atctagtttc
      181 tgcaaaactt agcaataata cagctatctt aaaaaataat atctccatag acaagtttaa
      241 acttcctaaa aattatatgc ttctagctta tcaagatggg gaatatttta ctgcagataa
      301 taatggaaat ttaaaaattt ttgacaattc ttataatgaa atttataatt ttcaatttga
      361 cgctagtgtt gtaggagtag cttctaatgg agatgattta gcccttgtac ttgcaaacaa
      421 tactatagtt cttgcaaatc gttctttggg tattaaattt agtcaaaccc taacctcagc
      481 tccagctcaa gacagtcgta ccgctaatcc tatattttta gacaatatca tcgtatatcc
      541 aacgctagat ggcaaaattt taattctttc aagaagcaat cttcaagtca ttaaagatgt
      601 ggttatttca gcagaaaatt ttttcaacaa tgtaatccat ctaagtgtaa tcggagataa
      661 acttatagca gcaacagcta aaaaaatcat tgttgtaagc cctgctagaa ctctttatct
      721 tgacgctgac ataaaagatg ttgcacttag tgatgatggt atttttatac tagaaaaaga
      781 tggcactatt attaaaactg attataactt aagaaaaatt gcagaaaaaa aatttgaatt
      841 tgcta
//
LOCUS       DARBBO010000172          829 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.173, whole genome shotgun sequence.
ACCESSION   DARBBO010000172 DARBBO010000000
VERSION     DARBBO010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 829)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.173"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..468)
                     /locus_tag="SB854_001708"
     CDS             complement(<1..468)
                     /locus_tag="SB854_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG0957671.1"
                     /translation="MGFRINTNIGALNAHANSVVNARELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNGKQLLSGNFINQEFQIGASSNQT"
     gene            complement(614..>829)
                     /locus_tag="SB854_001709"
     CDS             complement(614..>829)
                     /locus_tag="SB854_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HEG0957672.1"
                     /translation="DIGSVQNQVTSTINNITVTQVNVKAAESQIRDVDFAAESANYSK
                     ANILAQSGSYAMAQANSVQQNVLRLLQ"
BASE COUNT          236 a          142 c          151 g          300 t
ORIGIN      
        1 agtttgattt gaacttgcac cgatttgaaa ttcttgattg ataaaattcc cacttaaaag
       61 ttgtttaccg ttaaatgaag tagtatttgc gatattgtca agttcttcca ttaaacggtt
      121 gatatctgct tgaagcatgg ttcttgtttt taaactttgt ccatcttgag ccgcttgagt
      181 tgccttagtt ttgattgtat ctaagatttt aagttgctca tccatagcct tatcagcagt
      241 ttgtaagata cctatagcat cattaccatt gttgatagct tgacctaaag tggctgcttg
      301 tgaacgcaaa gaatctgcta tcgccatccc tgaagcatca tctgctgcgg agttgattct
      361 aagacctgaa ctaagtctgc ttaaagactt atccagttct ctagcattaa caactgaatt
      421 tgcatgtgca tttaatgcac cgatgttggt gtttatccta aaacccattt taaatccttt
      481 caaaatattg catcgaaaag attaaagcaa aaagtgttcc aagttttagt ttaattaaaa
      541 attttagagt ttaaaataaa aaagcctagt tctaaactag gcttggattt gtatatattg
      601 cagcttttgt aaactactgt agtaatctta aaacattttg ttgaacagaa ttagcctgtg
      661 ccatggcata agagccgctt tgagctaaga tatttgcttt agagtagttt gcactctcgg
      721 ctgcaaagtc tacatcacgg atttgcgatt ctgctgcttt aacgtttact tgagttacgg
      781 tgatgttgtt tatagttgat gtaacttgat tttgtaccga accaatgtc
//
LOCUS       DARBBO010000173          810 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.174, whole genome shotgun sequence.
ACCESSION   DARBBO010000173 DARBBO010000000
VERSION     DARBBO010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.174"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>810
                     /locus_tag="SB854_001710"
     CDS             <1..>810
                     /locus_tag="SB854_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-N-acetylgalactosaminyltransferase"
                     /protein_id="HEG0957673.1"
                     /translation="KIICLFIPFRKIRHKIKKTFLLKNIQRDKIDSYLPKKTLAQINK
                     YNNEDLIKLNKAIIGEEHKGYFNYDEKSKDPKSPLNPWAFIRVKNEAITLKASLESIL
                     PAIQRGVIGYNDCTDGSEEIILEFCKQYPSFIPIKYPYEIQIQNPKSEENKLYSYYNY
                     VASFIPKDEWLIKIDVDHYYDAKKLYKSFYIPRKNYHVISYSRIDFIFNEEKFYVYQN
                     KEGEILKAPGDCLAIQNTNLFWKEILIEDDTFKWNTAKNNIENAKSYEILKV"
BASE COUNT          350 a           93 c          109 g          258 t
ORIGIN      
        1 aaaataattt gcttattcat cccttttaga aaaattagac ataaaataaa aaaaacattt
       61 ttactaaaaa acatacaacg agataaaatc gattcttatc taccaaaaaa aactcttgcg
      121 caaattaata aatacaacaa tgaagattta attaaactta ataaagctat tataggtgag
      181 gagcataaag gatattttaa ttatgatgaa aaatctaaag atccaaaatc tcctttgaat
      241 ccttgggctt ttatacgagt aaaaaatgaa gctattacct taaaagcttc tcttgaaagt
      301 atattgcctg ctatccaaag aggtgttata ggatataatg attgtaccga tggaagtgaa
      361 gaaataattc tagaattttg caaacaatat ccttcattta taccaataaa atatccttat
      421 gaaattcaaa ttcaaaaccc aaaatcagaa gaaaataaac tctatagcta ttataattat
      481 gttgcaagtt ttataccaaa agatgaatgg cttataaaaa tagatgtgga tcattattat
      541 gatgcaaaaa aattatataa gagtttttat atacctagaa aaaattatca tgtaattagt
      601 tactctagga tagattttat atttaatgaa gaaaaatttt atgtttatca gaataaggag
      661 ggggagattt taaaagctcc tggagattgt ttagcaatac aaaacactaa cttattttgg
      721 aaagaaatac ttattgaaga tgatacattt aagtggaata ctgcaaaaaa taatatagag
      781 aatgcaaaat catatgaaat tttaaaagtt
//
LOCUS       DARBBO010000174          802 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.175, whole genome shotgun sequence.
ACCESSION   DARBBO010000174 DARBBO010000000
VERSION     DARBBO010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 802)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.175"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(39..800)
                     /locus_tag="SB854_001711"
     CDS             complement(39..800)
                     /locus_tag="SB854_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheR"
                     /protein_id="HEG0957674.1"
                     /translation="MELNEFIKIINEMSGIDLTDKKNILALKLNKFLEGTNTKNFSEF
                     LGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNILSAPCSSGEE
                     VYSLALLAAQNFIKDMYILGVDINSSVIEKAKLGKYQGRTLQRLSESEKRRFFLESED
                     KFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKLKLMERFHRI
                     LNDKGRLYVGNADLIPETIYFKKIFSPRGVYYEKV"
BASE COUNT          272 a          133 c           76 g          321 t
ORIGIN      
        1 taaatttcca aagtgtaact tttagtaatt tttagaattt atactttttc atagtaaaca
       61 cctcttggag agaaaatctt tttaaaataa atagtctctg gaattaaatc agcattgcca
      121 acataaagcc ttcctttatc atttaaaatt ctatgaaacc tctccataag ttttagtttt
      181 gattcatgat caaaataaat aatcatattt ctagaagcta taatatcaaa ttttcccaat
      241 cttgaaaatt tttcttcaaa aacattgcaa agttcaaatt tacaagtaca aagctcattt
      301 ttattaatag tataaaattt atcttcgctt tctaaaaaaa accttctttt ttcactctcg
      361 ctcaatcgct gtaaagttct tccttgatat tttccaagtt ttgctttttc aatcacactt
      421 gaattaatat caacgcctaa aatatacata tctttaataa aattctgtgc agccaataat
      481 gccaaagaat atacttcttc tccacttgaa caaggggcgc ttaggatatt tactctcttt
      541 tctaagcttt tggcataata aattatttct ttcaattgag ccaattctct taaaaaataa
      601 gtttcaccta tggttacaaa atctaaagtt tcttgtttaa gttgtctatt gctttttaat
      661 tttcccaaaa attcggaaaa atttttagta ttagttcctt caagaaattt attcaacttt
      721 aaagctagta tatttttttt atcggttaaa tcaataccac tcatttcgtt gataattttt
      781 ataaattcat taagttccaa tt
//
LOCUS       DARBBO010000175          758 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.176, whole genome shotgun sequence.
ACCESSION   DARBBO010000175 DARBBO010000000
VERSION     DARBBO010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.176"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..275
                     /locus_tag="SB854_001712"
     CDS             <1..275
                     /locus_tag="SB854_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEG0957675.1"
                     /translation="FYLKKWSQKTGLFYTHLSIKNMKTRWGSCNHNKAYINLNLKLIQ
                     KSLRAIEYVILHEICHLKFPNHSKEFYDFIEYFMSDFRQREKEFLS"
     gene            317..>758
                     /locus_tag="SB854_001713"
     CDS             317..>758
                     /locus_tag="SB854_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957676.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYTLSKEENTYHFSIDA
                     DEENLKTFCDSLNLMSHSVFLKKFDVKAGQDFNPCIPEDKEFSKFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLPEFEKINEENFNTFLNLAFDLLSQ"
BASE COUNT          285 a           77 c          111 g          285 t
ORIGIN      
        1 ctttttatct taaaaaatgg agtcaaaaaa caggtttatt ttacacgcac ttaagcatta
       61 aaaatatgaa aacgcgttgg ggttcatgta atcacaataa agcttatatt aatttaaatt
      121 taaaactcat tcaaaagagt ttaagggcta ttgaatatgt gattttgcat gaaatatgcc
      181 acttaaaatt ccctaatcac agcaaagaat tttacgattt tattgagtat tttatgagtg
      241 attttaggca aagagagaaa gaatttttaa gttaaaaatg ttatatttat agtttatttt
      301 tcaaaaaagg cataatatga ctttggattt tgattttatt tataatgcgg ataatgatat
      361 ttttgaatat ttattgcgtt tttatgcgaa aaattataat tacaccctta gtaaagaaga
      421 aaatacttat catttttcta tcgatgcaga tgaagaaaat ttaaagactt tttgtgattc
      481 tttgaattta atgagtcata gcgttttttt gaaaaaattt gatgtaaaag cgggacaaga
      541 ttttaaccct tgtataccag aagataaaga attttcaaaa ttttcttata ttactcattt
      601 aaattctaat gcctatcaag aaaaaaaact tttaaacaaa aatgaatggg gtgtgttttg
      661 tgagtgtgaa ttttcaagca atttaccaga atttgaaaaa atcaatgaag aaaatttcaa
      721 tactttttta aatcttgctt ttgatttgtt aagtcaag
//
LOCUS       DARBBO010000176          756 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.177, whole genome shotgun sequence.
ACCESSION   DARBBO010000176 DARBBO010000000
VERSION     DARBBO010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 756)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 756)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..756
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.177"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..224)
                     /locus_tag="SB854_001714"
     CDS             complement(<1..224)
                     /locus_tag="SB854_001714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEG0957677.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKTE
                     FLAPVRGQITDRNGTLLAINDLGFSISIKP"
     gene            complement(225..719)
                     /locus_tag="SB854_001715"
     CDS             complement(225..719)
                     /locus_tag="SB854_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957678.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFIYTPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILSYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
BASE COUNT          348 a          121 c           65 g          222 t
ORIGIN      
        1 taaggtttaa tagaaatact aaaacccaaa tcattaatag ccaataaagt tccatttcta
       61 tctgtaattt gacccctaac aggtgctaaa aattcggttt ttatggcatt ttgtttagca
      121 agctcttcat aatatacatt tgattttata ctcaaataat acacacgact taataaaaat
      181 ataaaaaaca atagtataaa tccaacaact aaacgcattc tcatttaaat tttaccttta
      241 aaaaacacat aagctaaaca acattctata aaaactgaaa caatatatgc ccatcctaaa
      301 attttaattt tttcatctcc aatataagac aatatcatat ccaaaaacaa aataatgccg
      361 taagcacaaa gtacaaaaac aacagggata aatttaccaa tttttaaatt tgtcttaatc
      421 caatctgcac aaagataata aaaaataaaa aatgccaacc aagatgaaaa aataaaaaaa
      481 ttataagtta tatcagtaaa aaataaaaaa aataaagaaa aataccatct aaaatcaagc
      541 tttgaaaaag ttctttctct ctcttctagt aagcaaaaca tataacagaa aaaaatccca
      601 taaagtaacg gagtatatat aaaagtcgaa ccaagaatct gatagattag aaaaaaaaat
      661 cctaaaaaga cataagctcc attaaatttt gctttataag cacttaaatt tcttctcatt
      721 tatcaagacc taaagtttga ttgataataa tatctt
//
LOCUS       DARBBO010000177          739 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.178, whole genome shotgun sequence.
ACCESSION   DARBBO010000177 DARBBO010000000
VERSION     DARBBO010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 739)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.178"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            1..477
                     /locus_tag="SB854_001716"
                     /pseudo
     CDS             1..477
                     /locus_tag="SB854_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872117.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
     gene            470..>739
                     /locus_tag="SB854_001717"
     CDS             470..>739
                     /locus_tag="SB854_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HEG0957679.1"
                     /translation="MFNFQYLANKYQLIMVDIDNTLFNYTYAHNKALQNVLKKYNFSM
                     EDYEYARMQIKARDLSVNHHKKELYFKLMCEEKNIHFIQAKNMFEL"
BASE COUNT          285 a           77 c          110 g          267 t
ORIGIN      
        1 aaagttagaa ttctttaaaa atatacccat aatttgcaat attaaagaat caaatttaga
       61 agagcttgtt attgagattt ttgacaatca tggtaaaatg atgacagggg ggggtatgag
      121 tattattttt tagattctca gattcctgat attttaagaa tttcaaaaaa aataaaaggg
      181 aaatttatca ttcgtgtttc tgatgtagaa acactaaatt acaagattat tgaattaact
      241 gagccaaagt atttatgggt tgattattct caatttgctg atttcgatat aaaagaatat
      301 gctaagttta ttaacaattt gtataaaagt atcgataaaa aaatagagcc cattatagta
      361 tcaccggagc tttataattt atcttataca gtcttaatac aacaaatttg tcaagttttg
      421 ccaaatagtt tttcagtatg tacaaaaaat ccggagcttt ggggttctta tgtttaattt
      481 tcagtattta gctaataaat atcaacttat tatggtggat attgacaata ctttatttaa
      541 ctatacttat gcacataaca aagctttgca aaatgtttta aaaaaatata atttttcgat
      601 ggaagattat gaatatgcaa gaatgcaaat taaagctcga gatttatctg taaatcatca
      661 taaaaaagaa ttatacttta aattaatgtg tgaagagaaa aatatacatt ttattcaggc
      721 taaaaatatg tttgagtta
//
LOCUS       DARBBO010000178          735 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.179, whole genome shotgun sequence.
ACCESSION   DARBBO010000178 DARBBO010000000
VERSION     DARBBO010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 735)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.179"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..>735)
                     /locus_tag="SB854_001718"
     CDS             complement(<1..>735)
                     /locus_tag="SB854_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEG0957680.1"
                     /translation="MNVLRNLDINPSFISDLIFVQTQQDIKSKHAQTLIDSMQNFSKV
                     TPMIRKILAQQEVPDEILYLAMVESGLKTHSVSNAKAVGVWQFMQPTARNLGLRIDAY
                     VDERRDPVKSTYAATNYLKELKEEFGKWYLALLAYNCGNGKLRQAIKQAGSDDLSVLL
                     NPDKKYLSLETRNFIRKILTLAFLANDRDFLLDKDASLMNYALSNEFAKVDVPSSASL
                     KEIAKNLNMDLATFKKYNPQFKHNFTP"
BASE COUNT          248 a          129 c           96 g          262 t
ORIGIN      
        1 aggcgtaaaa ttatgtttaa attgtggatt atatttctta aaagttgcaa gatccatatt
       61 taaattttta gctatttctt ttaaagatgc agaagaaggc acatcaactt ttgcaaattc
      121 attgcttaaa gcataattca ttaaagacgc atctttatct agtaaaaaat ccctatcatt
      181 agctaaaaaa gcaagcgtta aaatctttct tataaaattt ctagtttcta aagaaagata
      241 tttcttatca gggttcaata aaacacttaa atcatcactt cctgcttgct tgatagcttg
      301 tcttagcttg ccatttccgc aattataagc taaaagtgcc aaataccatt tgccaaattc
      361 ttcttttaac tcttttaaat aatttgtagc ggcataagtt gacttgactg gatcacgcct
      421 ttcatcaaca taagcatcga ttcttaaacc caaatttcta gctgttggtt gcataaattg
      481 ccaaacccct acagccttgg cattagaaac gctatgagtt ttcaagcctg attcaaccat
      541 agctagatac aaaatctcat caggaacttc ctgctgggct aaaatttttc ttatcatagg
      601 agtaactttt gaaaaatttt gcatactatc tattaaagtt tgagcatgtt ttgattttat
      661 atcttgttga gtttgcacaa aaatcaaatc actaataaaa cttggattaa tatctaaatt
      721 tcttaaaaca ttcat
//
LOCUS       DARBBO010000179          723 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.180, whole genome shotgun sequence.
ACCESSION   DARBBO010000179 DARBBO010000000
VERSION     DARBBO010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 723)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.180"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            29..>723
                     /locus_tag="SB854_001719"
     CDS             29..>723
                     /locus_tag="SB854_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HEG0957681.1"
                     /translation="MFNILLEYNNFLNFKNQKHYLIDNALLTHQYIKYNKKNKKYWVL
                     KLQTENFTFYTTSFKDLNLSKNQFLSLRIITHNINFKDYLSKSFYAPSYDFEKLKEKE
                     YNPIISYFLNQHTNEKIKEFYGALFFALPISLELRNDVNYYGIAHLIAISGYHIGLLF
                     SLIFFILAPIYSFFQKRYFPYRNLRLDLSILIFALLLAYACLIGFVPSFVRSLIMAFW
                     VFYLLCKNIKIIN"
BASE COUNT          252 a           97 c           76 g          298 t
ORIGIN      
        1 tttatttttc tctgttgttg ttatttttat ttttaatatc cttttagaat ataataattt
       61 tttaaacttt aaaaaccaaa aacattacct tatagacaac gctctattaa cgcaccaata
      121 tataaaatat aataaaaaaa ataaaaaata ctgggtttta aagttacaaa ctgaaaactt
      181 cactttttat actacaagtt ttaaggattt aaatttaagt aagaatcaat ttttaagcct
      241 tagaattatc acccataata ttaactttaa agactatctg agtaaaagtt tttacgcacc
      301 ttcttatgat tttgaaaaat taaaagaaaa agaatacaat cccattatat cttacttctt
      361 aaatcaacat acaaatgaaa agattaaaga attttatggt gctttatttt ttgcactgcc
      421 catatcttta gagcttagaa acgatgtaaa ttactacggt atagcacacc ttatagcaat
      481 tagcggttat cacataggct tactttttag tttaattttc tttattttag ctccaattta
      541 tagttttttc caaaaaagat attttcctta tagaaattta cgtttagatt taagtatttt
      601 aatttttgca ctacttttag cttatgcttg tttaatagga tttgtccctt cttttgtgcg
      661 ctccttgatt atggcttttt gggtttttta tctattgtgt aaaaatataa aaatcattaa
      721 ttt
//
LOCUS       DARBBO010000180          712 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.181, whole genome shotgun sequence.
ACCESSION   DARBBO010000180 DARBBO010000000
VERSION     DARBBO010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 712)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.181"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>712
                     /locus_tag="SB854_001720"
     CDS             <1..>712
                     /locus_tag="SB854_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEG0957682.1"
                     /translation="TQPNVSIVIKNLENKFDGILFERLGKKLLPTPKALELGKNWLKI
                     IQAYYQSLEKLNDESMLLGEIKIASTQSISEHFLAPILFDFKAEFKNIEIRSQTQNSK
                     ECLNLLKNGNIEFAIIEAELDPALVEYENLEINFWQDDELIVATSDKKLNEKEFYIDE
                     LLEQKWILREVGSGLRDKFLNEIGASSKKLNIFLELDRMAAIKELVLQKKAISIFSKK
                     SIEKELKNSTLYEIKLKNI"
BASE COUNT          308 a           89 c          103 g          212 t
ORIGIN      
        1 aactcaacct aatgtttcaa tagtaattaa aaatttagaa aataaatttg atggcatttt
       61 atttgaaaga cttggaaaaa aactcttacc tacaccaaaa gctttagaac taggaaaaaa
      121 ttggttaaaa attatacaag cctactacca aagcttagaa aaattaaacg acgaaagtat
      181 gctcttaggg gaaataaaaa tagcctcaac tcaaagcatt tctgaacatt ttttagctcc
      241 tattttattt gattttaagg cagaatttaa aaacatagaa attcgctctc aaacgcagaa
      301 ttcaaaagaa tgtttaaatt tactaaaaaa cggaaatata gaatttgcaa tcattgaagc
      361 agaacttgat ccagctttag tggagtatga aaatttagaa ataaattttt ggcaagatga
      421 tgaacttata gtagctacaa gtgataaaaa actcaatgaa aaagaatttt atatcgatga
      481 acttttggaa caaaagtgga ttttaagaga agtaggctca ggcttaaggg ataaattttt
      541 aaacgaaatt ggtgcaagct caaaaaaact taatattttt cttgaacttg atagaatggc
      601 tgcgattaaa gaacttgttt tacaaaaaaa agcaatctct attttttcca aaaaaagcat
      661 agaaaaagaa ttaaaaaatt caacacttta tgaaattaaa ttaaaaaata tc
//
LOCUS       DARBBO010000181          706 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.182, whole genome shotgun sequence.
ACCESSION   DARBBO010000181 DARBBO010000000
VERSION     DARBBO010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 706)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.182"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..392
                     /gene="perR"
                     /locus_tag="SB854_001721"
     CDS             <1..392
                     /gene="perR"
                     /locus_tag="SB854_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HEG0957683.1"
                     /translation="KKHELKATPQRLCVLKILKRHEHPNIDELYTEIKKEYPSISLAT
                     VYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCTKCGGIEDLSFKDAKLYEYQ
                     EHLEKKIGNLVNHLSVCAYVDNCKKCH"
     gene            438..>706
                     /locus_tag="SB854_001722"
     CDS             438..>706
                     /locus_tag="SB854_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957684.1"
                     /translation="MVYEIQKNFLLSDCTLLENLKKDNIPFRNSKFETFYTQITSNHS
                     VKFQSFCNEFYKITKFNNSILEQNQEEKISKKKFEKARKKIIGKS"
BASE COUNT          294 a           79 c           96 g          237 t
ORIGIN      
        1 ttaaaaaaca tgagttaaaa gctactccgc aaagactatg tgttttaaaa attttaaaaa
       61 gacatgagca tcctaatatt gatgaattat atacagaaat taaaaaagaa tacccttcaa
      121 tctctttagc gacggtttat aaaaatctta atactttaca agaacaaggt ttagttgttg
      181 aaatcaatgt tttaaatcaa aaaacttgtt acgatatcta tgaagaagaa catattcatg
      241 ttgtttgcac caaatgtggt ggtatagagg atttaagttt taaagatgct aagctttatg
      301 aatatcaaga gcatttagaa aaaaagatag gcaatctcgt caatcatctg tctgtttgtg
      361 cttatgttga taattgcaaa aagtgtcatt aagcaaaata aggttaaaat aacccatata
      421 ttttaagggt tattttaatg gtttatgaaa ttcaaaaaaa ctttttacta tctgattgca
      481 ctcttttaga gaatttaaaa aaagataata taccttttcg aaattctaaa tttgaaactt
      541 tttatactca aataacttca aatcatagtg ttaaatttca aagtttttgc aatgaatttt
      601 ataaaattac aaaatttaat aattcaattt tagaacagaa tcaagaagag aaaatttcta
      661 aaaaaaaatt tgaaaaagct cgaaaaaaga ttataggaaa gagcat
//
LOCUS       DARBBO010000182          687 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.183, whole genome shotgun sequence.
ACCESSION   DARBBO010000182 DARBBO010000000
VERSION     DARBBO010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 687)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.183"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..656
                     /gene="ung"
                     /locus_tag="SB854_001723"
     CDS             <1..656
                     /gene="ung"
                     /locus_tag="SB854_001723"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEG0957685.1"
                     /translation="DDWKEFLRDEFQKKYFLEIKKQYLNAINQNIIIYPPANLIFNAF
                     NLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNIFKELQNDLNITPAK
                     SGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHKLSNEKSGLVFMLWG
                     NYAKNKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFLKKVGKIPIDWKIV"
BASE COUNT          269 a           92 c          105 g          221 t
ORIGIN      
        1 atgatgactg gaaagaattt ctaagagacg aatttcaaaa aaaatatttt ctagaaatca
       61 aaaaacaata cctaaatgca attaatcaaa atataattat ttatccgcct gcgaatttaa
      121 tctttaatgc ttttaattta tgtcctttaa aagaaattaa aattattatc ctaggacaag
      181 atccttatca tcaaccaaat caagcaatgg ggcttagttt ttcggttcca aaaaatgtaa
      241 aaatcccacc aagtcttaat aatattttta aagaattgca aaatgattta aacatcactc
      301 cagcaaaaag cggagattta agctcttggg caaaacaagg ggttttgctc ttaaattcta
      361 ttcttagcgt tgaagcaaat aaagcagcta gccatagttc gtggggttgg caagaattta
      421 gtgatgctat aatacataaa ttaagtaatg aaaaatcagg gcttgttttt atgctttggg
      481 gaaattacgc aaaaaacaag gagattttga ttgataatac taagcatttg attttaaaag
      541 cagctcaccc aagcccttta gctagaacag gatttttagg ttgtaagcat ttttcaaagg
      601 ctaatgaatt tttaaaaaaa gttggtaaaa ttcctataga ttggaaaata gtttaaaaaa
      661 ttattttaaa ctttaataaa aatatta
//
LOCUS       DARBBO010000183          658 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.184, whole genome shotgun sequence.
ACCESSION   DARBBO010000183 DARBBO010000000
VERSION     DARBBO010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 658)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.184"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..556
                     /locus_tag="SB854_001724"
     CDS             <1..556
                     /locus_tag="SB854_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957686.1"
                     /translation="AYEKKPNKDFKIQEVKLVQFSQENKDCLELLIEASQVRILNSYN
                     SCQKLSKDESFQKFLNEDFLKLYKNNGYLINENLQNLKNTMQDIMIYYKLRYSFSKDV
                     KDMSKNKNLDILNIDEKDGGTLLYKINNQACVGIELTRHDSRMAMKIYGIENLDKECK
                     LFIQSPSFKDLSYTKKDFKWYYLE"
BASE COUNT          278 a           71 c           90 g          219 t
ORIGIN      
        1 tgcttatgaa aaaaaaccga ataaagattt taagattcaa gaagttaaat tagtgcaatt
       61 ttcacaagag aataaagatt gccttgaact tttaatagaa gccagtcaag ttagaatttt
      121 aaatagctat aattcttgtc aaaaattatc taaagatgaa agttttcaaa aatttcttaa
      181 tgaagatttt ttaaaacttt ataaaaataa tggatatttg attaatgaaa atttacaaaa
      241 tttgaaaaat accatgcagg atattatgat atattataaa ctccgatatt cttttagtaa
      301 agatgtaaaa gatatgagta aaaataagaa tttggatatt ttaaatatag atgaaaaaga
      361 tggtggcact ttactttaca aaatcaacaa tcaagcttgc gttggaatag aacttacaag
      421 acatgactca agaatggcta tgaaaatata cgggatagaa aatttggata aagagtgcaa
      481 actatttatc caatcacctt cttttaaaga tctttcctac acaaaaaagg attttaagtg
      541 gtattattta gaataaataa atgctttaat ttttaaataa aaatttttaa aaaccacact
      601 taaagtaaaa gtatcttgcc ttccaagatt ttgaaaaacg cagttgtcta agtctttt
//
LOCUS       DARBBO010000184          609 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.185, whole genome shotgun sequence.
ACCESSION   DARBBO010000184 DARBBO010000000
VERSION     DARBBO010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 609)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.185"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>609
                     /locus_tag="SB854_001725"
     CDS             <1..>609
                     /locus_tag="SB854_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEG0957687.1"
                     /translation="ILEKGIFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKITLKNTQ
                     LASVISAISHELKNPLSVIDLSLEMLKDEKLEDKKLKKELLEKISRQSVKLNALTHKL
                     NFVFNLNSEALQMQEFDLFSLCEKITKNPGFERVALQGKSTKVKADEFLIEQVIINLL
                     SNALKYSQKKVILTARDQKIIVQDFGKGIEEDKIKLITKKFY"
BASE COUNT          264 a           72 c           92 g          181 t
ORIGIN      
        1 ttatattaga aaaaggaatc tttaaagaat ttaatttact aaatgagaaa cttttaaaaa
       61 ctaaggataa aattctaaag aatacccaaa aaaataaaaa acaaagcgat aaaatcactt
      121 taaaaaatac tcagcttgct agcgtgattt ctgctatttc tcatgagctt aaaaatccat
      181 taagcgtgat tgatcttagc ttagagatgc taaaagatga gaaattggaa gataaaaaat
      241 taaaaaagga attactagaa aaaatttcac gtcaaagcgt taaacttaat gctttaaccc
      301 ataagcttaa ttttgttttt aatcttaata gtgaagcctt gcagatgcaa gaattcgatc
      361 ttttttctct atgtgaaaaa atcactaaaa acccaggctt tgaaagagtt gcattgcaag
      421 gtaaaagcac gaaagttaag gctgatgaat ttttaatcga gcaagtgatt ataaatttgc
      481 tttctaatgc tttaaaatat agtcaaaaaa aagtcatttt aacggcaaga gatcaaaaga
      541 taatagtgca agattttgga aaaggcatag aagaagataa aataaaattg attacaaaaa
      601 aattttata
//
LOCUS       DARBBO010000185          572 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.186, whole genome shotgun sequence.
ACCESSION   DARBBO010000185 DARBBO010000000
VERSION     DARBBO010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.186"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..326
                     /locus_tag="SB854_001726"
     CDS             <1..326
                     /locus_tag="SB854_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957688.1"
                     /translation="LLTNIQDLNFTLSNKISSTQQQFHILSTITKEINLDKNKAIILN
                     QIISWLNSNELKITNLEFEQTKIILSFIDENHFKRALENLNSTFKFLDKNEETLNIIL
                     EVIHE"
     gene            319..>572
                     /locus_tag="SB854_001727"
     CDS             319..>572
                     /locus_tag="SB854_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957689.1"
                     /translation="MNKIEVFLQNLNPREKFLFISFICLCALFLAFKIHDRFLEDIFQ
                     KTLVEHNYLALNEAKIENSHLKEIETKLTKQIKTEEEKLK"
BASE COUNT          253 a           81 c           53 g          185 t
ORIGIN      
        1 aattattaac aaacatacaa gatttaaact ttactctttc caataaaata tcatctacac
       61 aacaacaatt tcatatttta tccaccataa caaaagaaat caatttagat aaaaataagg
      121 caatcattct aaatcaaatc atatcatggc ttaattccaa tgaacttaaa atcacaaatc
      181 ttgaatttga acaaacaaaa atcattcttt cttttatcga tgaaaaccac tttaaaagag
      241 cattagaaaa tctaaattct acttttaaat tccttgataa aaatgaagaa acattgaata
      301 tcatattaga agtcatacat gaataaaata gaagtatttt tgcaaaattt aaatcctagg
      361 gaaaaatttc tttttatttc ttttatctgc ctttgtgctt tgtttttagc ttttaaaatt
      421 catgatcgct ttttggaaga tatttttcaa aaaacattag tagaacataa ttaccttgca
      481 ttaaatgaag caaaaataga aaattcacat cttaaagaaa tagagacaaa gctaacaaaa
      541 cagataaaaa cagaggaaga aaaattaaaa ta
//
LOCUS       DARBBO010000186          559 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.187, whole genome shotgun sequence.
ACCESSION   DARBBO010000186 DARBBO010000000
VERSION     DARBBO010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 559)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.187"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..472)
                     /locus_tag="SB854_001728"
     CDS             complement(<1..472)
                     /locus_tag="SB854_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG0957690.1"
                     /translation="MLINQTFEIDSCDDVELGIKRTSKLEYRISYDDEKDLKAIVFVI
                     GGYGANANIYFLDSYRNYIAKNFDVATINVFYHCFCQRRSDVEKYSAYKYFQEEDIEN
                     IKNLLNQFHFSYGEINNDNALFLANSLVKHVENLKMQNKLDHNFKLNFTSTFIPP"
BASE COUNT          202 a           83 c           60 g          214 t
ORIGIN      
        1 taggcgggat aaaagttgaa gtaaaattta gtttaaagtt atgatcgagt ttattttgca
       61 tttttaaatt ttctacatgt ttcactaaag aattcgctaa aaaaagcgca ttatcattat
      121 ttatttcacc ataagaaaaa tgaaactgat ttaataaatt tttaatattt tcaatatctt
      181 cctcttgaaa atatttgtat gcactatatt tctcaacatc tgaacgcctt tggcaaaaac
      241 aatgataaaa aacatttatt gtcgctacat caaaattttt agcaatataa tttctataag
      301 aatctaaaaa atatatattt gcattagctc cataacctcc tatgacaaaa actatagctt
      361 tgagatcttt ttcatcatca taacttatgc gatattcaag cttactggtt cttttaatac
      421 ctagttctac atcatcacaa gaatcaattt caaaggtttg gtttatgagc atatattttc
      481 ctttttaatt aatgatcaat tttaactgat tttctacatc tttaaaagta aacactttat
      541 ttccacaagg ataagagat
//
LOCUS       DARBBO010000187          533 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.188, whole genome shotgun sequence.
ACCESSION   DARBBO010000187 DARBBO010000000
VERSION     DARBBO010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 533)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.188"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>533
                     /locus_tag="SB854_001729"
     CDS             <1..>533
                     /locus_tag="SB854_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEG0957691.1"
                     /translation="EDTQIYKELKCAKNEALILRELCRNYVVSISSINAFTLLSTIFG
                     NDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALLQSELSLSEYFLEF
                     LEAKPRLNFEKQEAYADYLEYLKDEFARIQLYERLSFIQKSAYNSEIKNQIKLYERHI
                     KERLKKSKFYNVLADIF"
BASE COUNT          207 a           53 c           81 g          192 t
ORIGIN      
        1 agaagatact caaatttata aagagcttaa gtgtgctaaa aatgaggctt tgattcttag
       61 ggagctttgt agaaattatg tcgtttctat ttcttctatc aatgccttta ctttattatc
      121 gacaattttt ggaaatgata agtatcttta tcttgatgct ttggaggatt taaaaaaact
      181 tattgaaaga ggttttgtaa atcaaaattc gagttttttt aaaagtttag aaaataataa
      241 aactcaaaca ttaactcttg ccttattgca aagtgagctt agtctaagtg aatatttttt
      301 agaattttta gaagcaaaac ctcgtttaaa ctttgagaaa caagaggctt atgcagatta
      361 tttagaatat ttaaaagatg aatttgcgcg tattcaatta tatgaaagat taagttttat
      421 acaaaaaagt gcttataata gtgaaataaa aaaccaaatt aaactttatg aaagacatat
      481 caaagaaaga ctaaaaaaaa gtaaatttta taatgtattg gctgatattt tta
//
LOCUS       DARBBO010000188          505 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.190, whole genome shotgun sequence.
ACCESSION   DARBBO010000188 DARBBO010000000
VERSION     DARBBO010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.190"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            70..>505
                     /locus_tag="SB854_001730"
     CDS             70..>505
                     /locus_tag="SB854_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEG0957692.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLNISFQNKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANTMLEILQEDAKKLNLNNIKCENLSFETWMQNNP
                     NVKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKSD"
BASE COUNT          210 a           62 c           71 g          162 t
ORIGIN      
        1 aagcccaaaa aagggcttga attttaaaaa tttatgctat gattttatat attttatcaa
       61 ggaaaatata tgaatttatg ggataaaaag gccaaaactt acgcaagata tcaaaacact
      121 ttaaacacca tacaaaagca aacttttgaa tatttacaaa atttaaatat ttcttttcaa
      181 aataaaagca ttatagatat aggatgtgga actggggttt ggactttaca cttagctaaa
      241 gaagctaaag aaattttagc cctagatagt gcaaatacta tgcttgaaat tttacaagaa
      301 gatgctaaaa aactaaatct taacaatata aaatgcgaaa atttgagctt tgaaacttgg
      361 atgcaaaaca atcctaatgt taaatttgat cttgcatttt taagtatgtc tcctgcttta
      421 caaaatgaaa aagattatac aaatttctta aatctagcca aaataaaaat ttatcttggt
      481 tgggctgatt atagaaaaag tgatt
//
LOCUS       DARBBO010000189          456 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.192, whole genome shotgun sequence.
ACCESSION   DARBBO010000189 DARBBO010000000
VERSION     DARBBO010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 456)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 456)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..456
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.192"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>456
                     /locus_tag="SB854_001731"
     CDS             <1..>456
                     /locus_tag="SB854_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HEG0957693.1"
                     /translation="NPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSS
                     YQRFKLSHQKALKLAKELNQVFVDEKNLNVYHLQSLKEIKNFIKFILEKNPYAMLSAH
                     SLALRITWASENFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQL"
BASE COUNT          191 a           57 c           57 g          151 t
ORIGIN      
        1 aatcctttaa gcgaaccttt aaaaaaagaa caaaaaaata aatttttaat gtttttgaaa
       61 aataaagatt ttaaagcagc tttttctttc ttaaaagacg cacataaata cggctttggt
      121 ttgctttcaa gctatcagag atttaaactc tctcatcaaa aagcattgaa attagcaaaa
      181 gaattaaatc aagtatttgt cgatgaaaaa aatcttaatg tatatcattt acaaagccta
      241 aaagaaatta aaaatttcat caaattcata cttgaaaaaa atccttatgc catgctttca
      301 gcacattctt tagctttaag gattacttgg gcaagtgaaa atttttgcga acttgggctt
      361 aaagaaatgt caaatttatt ggattttcaa aatggaattt attttaaaaa aggtatagat
      421 tttgaaaaac ttcaagaaaa aaataataat caatta
//
LOCUS       DARBBO010000190          417 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.193, whole genome shotgun sequence.
ACCESSION   DARBBO010000190 DARBBO010000000
VERSION     DARBBO010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 417)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.193"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            66..>417
                     /locus_tag="SB854_001732"
     CDS             66..>417
                     /locus_tag="SB854_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HEG0957694.1"
                     /translation="MFVKNVNFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELS
                     FSEFKAKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKA
                     YLIYEKNSKMFFKFG"
BASE COUNT          135 a           35 c           61 g          186 t
ORIGIN      
        1 acttcttttt atctaaattt tttctttaat attattttaa tttatttttt aaaaaaaggt
       61 ttattatgtt tgttaaaaat gtaaattttt attacagaca aatccttgaa aaatttgaaa
      121 attcttattt tgcagaggat ttgactaagg taattatagg gattgattgt gattatttag
      181 atgctaatga attatccttt agcgagttta aggcaaaata ttatgaagct ttaagcaaga
      241 ataaaatttg cgactttgct ggattttttg gagtttttag tgcaaatttt gtatctttgt
      301 ttgaaaaaat tccactttct tctaagaaaa attatgattt tcctttattt ttatttgcca
      361 atgctaaggc ttatttgatt tatgagaaaa atagcaagat gttttttaaa tttggtg
//
LOCUS       DARBBO010000191          361 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.194, whole genome shotgun sequence.
ACCESSION   DARBBO010000191 DARBBO010000000
VERSION     DARBBO010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 361)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.194"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>361
                     /locus_tag="SB854_001733"
     CDS             <1..>361
                     /locus_tag="SB854_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HEG0957695.1"
                     /translation="KDLNKPFEKLEPLSLNKQNEFLLKAYYKVYQSIKHCRDFSKILS
                     NDFEKIQSVYLSLNEKEEYLNLAIEKIDEFKNKLEDIKQMQDLYEILQPLRTQFELNL
                     ARIYVLNPKTKEDAFNK"
BASE COUNT          163 a           32 c           43 g          123 t
ORIGIN      
        1 ataaagattt aaataaacct tttgaaaaat tagaaccttt aagtttaaat aaacaaaatg
       61 aatttttact taaggcttat tataaagttt atcaaagtat taaacattgt agagatttta
      121 gtaaaatact cagcaatgat tttgaaaaaa tacaaagtgt atatttgagt ttaaatgaaa
      181 aagaagaata tttaaattta gctattgaaa aaatagatga gtttaaaaat aaacttgaag
      241 atataaaaca aatgcaagat ttatatgaaa ttttacaacc tctgcgtact caatttgaac
      301 ttaatcttgc tagaatttat gttttaaatc ctaaaaccaa agaagatgct tttaataaaa
      361 g
//
LOCUS       DARBBO010000192          357 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.195, whole genome shotgun sequence.
ACCESSION   DARBBO010000192 DARBBO010000000
VERSION     DARBBO010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 357)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 357)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.195"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..>357)
                     /locus_tag="SB854_001734"
     CDS             complement(<1..>357)
                     /locus_tag="SB854_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEG0957696.1"
                     /translation="IENLNPSKNPKENEICTQKITIKSVSSRKNQLFGLGFCEEWQEN
                     ISFVFFHPRAWHFGICKVGKELIFNAKLSHFNHTWQFNNPKILTSFEGFSPKYQILGL
                     KDTKIAAFIHKYLNYE"
BASE COUNT          130 a           51 c           43 g          133 t
ORIGIN      
        1 tttcataatt aagatattta tgtataaaag cagcaatttt tgtatctttt aaacctaaaa
       61 tttgatactt tggactaaaa ccctcaaaag aagttaaaat tttaggattg ttaaattgcc
      121 aagtgtgatt aaaatgcgag agtttagcat taaaaataag ctcttttcct accttacaaa
      181 taccaaaatg ccaagctcta ggatgaaaaa acacaaaaga aatattttct tgccattcct
      241 cacaaaaacc taaaccaaaa agttgatttt ttcttgaact aacgcttttt atagtgattt
      301 tttgggtaca aatttcattt tctttaggat ttttacttgg atttaaattt tcaattt
//
LOCUS       DARBBO010000193          344 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.196, whole genome shotgun sequence.
ACCESSION   DARBBO010000193 DARBBO010000000
VERSION     DARBBO010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 344)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.196"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..335)
                     /locus_tag="SB854_001735"
     CDS             complement(<1..335)
                     /locus_tag="SB854_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019108902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HEG0957697.1"
                     /translation="MDGVIDNSGSALPPLNYILGREMEHSYGDYYEDFPHNRIIFFLK
                     THWTRKENSPYFFNNENYFIRTLLNKDHLILQSQKNKNIIYVSYHSKEDPLTPANFKE
                     LTMQILKILG"
BASE COUNT          124 a           54 c           39 g          127 t
ORIGIN      
        1 cctaaaattt ttaatatttg catggttagt tctttaaaat ttgctggagt taaaggatct
       61 tctttactat gataactcac ataaataata tttttatttt tttgactttg caaaatcaaa
      121 tgatccttat ttaacaatgt tctaataaaa taattttcat tattaaaaaa ataaggtgaa
      181 ttttctttac gcgtccagtg ggtttttaga aaaaaaataa tcctattatg tggaaaatct
      241 tcataataat caccgtaact atgttccatt tctcttccta aaatataatt taaaggtggc
      301 aaagccgaac ccgaattatc aatcacacca tccacatacc aagg
//
LOCUS       DARBBO010000194          336 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.199, whole genome shotgun sequence.
ACCESSION   DARBBO010000194 DARBBO010000000
VERSION     DARBBO010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 336)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 336)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..336
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.199"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            65..>336
                     /locus_tag="SB854_001736"
     CDS             65..>336
                     /locus_tag="SB854_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957698.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFD"
BASE COUNT          129 a           20 c           52 g          135 t
ORIGIN      
        1 ttgcttggta acaattttat aagtataatt tacaaaataa taaaaaatag agctaaggaa
       61 aaaaatgctt attattggac ataaattatt aaaaaattta gatttttctt ttattgaaag
      121 tgttgaagaa gttaaagata ataaagttta ttgtattgtt tatgatgaaa aattgatttc
      181 ttatttaagt caaaatgatt ttgaatttgc tattttagtt caaaataaag atgagatatt
      241 tttagccaat gctttaggag ctaagttttt gctttgtaat gataaaaaac ttgcaaaatt
      301 tgctagtaag gttgcagaat tttatgtttt tgatag
//
LOCUS       DARBBO010000195          319 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.202, whole genome shotgun sequence.
ACCESSION   DARBBO010000195 DARBBO010000000
VERSION     DARBBO010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.202"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            <1..>319
                     /locus_tag="SB854_001737"
     CDS             <1..>319
                     /locus_tag="SB854_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HEG0957699.1"
                     /translation="ENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELM
                     LKELSYKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKK
                     YFLK"
BASE COUNT          131 a           44 c           33 g          111 t
ORIGIN      
        1 agaaaattta aaatcaaatt ctgatatctt aattcaagat atacttcaag ctataaatga
       61 aaaaaaagaa cttgtaatct tgcctgaaac cgcttttgct tttgatttaa aaaataccaa
      121 atatgagctc atgcttaaag aattatctta taaaatcacc attattacag gagcatttca
      181 tgttgaaaaa gaacatactt acaatagcac ttatatcttt aaaaaaggca atgtctatat
      241 tttaaataag cattttttag ttccctttgg tgaagaaatt ccatttttta aagacttaac
      301 aaaaaaatat tttcttaaa
//
LOCUS       DARBBO010000196          317 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.denovo.203, whole genome shotgun sequence.
ACCESSION   DARBBO010000196 DARBBO010000000
VERSION     DARBBO010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.denovo.203"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            complement(<1..>317)
                     /locus_tag="SB854_001738"
     CDS             complement(<1..>317)
                     /locus_tag="SB854_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEG0957700.1"
                     /translation="KQIIQNEFDIFNKALMQYLERLESSQSENEDYLVANALSPFLTM
                     LNFKTHIKTKQKGKSEIDLSISKDEFSKDLEVLIEAKKPNSKEFITHTKVNSKALHET
                     ILY"
BASE COUNT           93 a           45 c           48 g          131 t
ORIGIN      
        1 atataaaata gtctcgtgta aggctttaga atttaccttt gtatgagtga taaattcttt
       61 tgaatttggc tttttagcct caataagaac ttctaagtct ttactaaact catctttaga
      121 gatggataag tcaatctcac ttttgccttt ttgcttggtt ttgatgtggg ttttgaaatt
      181 taacatggtt aaaaatggac taagtgcatt agctacaaga taatcttcat tttcactttg
      241 cgaactttca agtctttcta aatactgcat taaagccttg ttaaatatat caaattcatt
      301 ttgaatgatt tgctttt
//
LOCUS       DARBBO010000197         1971 bp    DNA     linear   BCT 06-NOV-2023
DEFINITION  TPA_asm: Campylobacter jejuni isolate 178
            SAMN14118102-rid18151073.guided.138, whole genome shotgun sequence.
ACCESSION   DARBBO010000197 DARBBO010000000
VERSION     DARBBO010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN14118102
            Sequence Read Archive: SRR11101755
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1971)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1971)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (22-MAY-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 22-MAY-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT001750813.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT001750813.1
            Genome Coverage       :: 85x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 05/23/2023 00:15:12
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 1,740
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,648
            CDSs (with protein)               :: 1,648
            Genes (RNA)                       :: 44
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 38
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 48
            CDSs (without protein)            :: 48
            Pseudo Genes (ambiguous residues) :: 0 of 48
            Pseudo Genes (frameshifted)       :: 39 of 48
            Pseudo Genes (incomplete)         :: 4 of 48
            Pseudo Genes (internal stop)      :: 12 of 48
            Pseudo Genes (multiple problems)  :: 7 of 48
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN14118102-rid18151073.guided.138"
                     /isolate="178"
                     /isolation_source="chicken"
                     /db_xref="taxon:197"
                     /country="Sweden"
                     /collected_by="National Veterinary Institute"
                     /note="genotype: 572"
     gene            222..995
                     /locus_tag="SB854_001739"
     CDS             222..995
                     /locus_tag="SB854_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OXA-61 family class D beta-lactamase OXA-193"
                     /protein_id="HEG0957701.1"
                     /translation="MKKITLFLLFLNLVFGQDKILNNWFKEYNTSGTFVFYDGKTWAS
                     NDFSRAMETFSPASTFKIFNALIALDSGVIKTKKEIFYHYRGEKVFLSSWAQDMNLSS
                     AIKYSNVLAFKEVARRIGIKTMQEYLNKLHYGNAKISKIDTFWLDNSLKISAKEQAIL
                     LFRLSQNSLPFSQEAMNSVKEMIYLKNMENLELFGKTGFNDEQKIAWIVGFVYLKDEN
                     KYKAFALNLDIDKFEDLYKREKILEKYLDELVKKVKNDG"
     gene            complement(1080..1964)
                     /locus_tag="SB854_001740"
     CDS             complement(1080..1964)
                     /locus_tag="SB854_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HEG0957702.1"
                     /translation="MIRIDINHPMNTAKGRLDLNFKKDIESGKITALFGESGAGKTTL
                     LKIIAGLIKPKLGRIEVDNELWFDSSKNFSLALQKRKIGFVFQDYALFPNMNIKENIA
                     YAASSKAKVSELLALMKLENLAKIYPKHLSGGQAQRVALARALAREPKILLLDEPLSA
                     LDFKMRANLQDELTKILEYFKISTLLVSHDLAEIYKLSHRILELKNGKIIKDFPKNEF
                     FTHSNISAKLRLSATLLEIKKSDILVVLTLLLNQDIIKITLSEEEFLKAYQDVKIGDT
                     LLLSIKAFNPIIVGKLDK"
BASE COUNT          708 a          256 c          284 g          723 t
ORIGIN      
        1 attttgcata cctcaatttt tagctataaa ataataagca aaaaactagc atataatttt
       61 tcataaatag taaatgaatg ataaagtaag ttatatttaa tcgatggatt gctttaatgg
      121 ttacaatttt agaaaatttc agttcatgtt aaaggatatt taaagaaaat aaagctttaa
      181 aaagtatttt gtttaaaatt atttaaatag aaagatattt tatgaaaaaa ataactttat
      241 ttttactttt cttaaattta gtgtttgggc aagataagat attaaataat tggtttaaag
      301 agtataatac aagcggcact tttgtttttt atgatggaaa aacttgggcg agtaacgact
      361 tttcaagggc tatggagact ttctctcccg cttccacttt taaaattttt aatgctctaa
      421 ttgcacttga tagtggtgtg ataaaaacta aaaaagaaat tttttatcac tatagaggtg
      481 aaaaagtatt tttatcttct tgggcgcaag atatgaattt aagttcagct ataaaatatt
      541 ctaatgttct tgcttttaaa gaagtggcaa gaagaattgg tatcaaaact atgcaagaat
      601 atttaaacaa gcttcattat ggtaatgcta aaatttccaa gatcgatact ttttggcttg
      661 acaactcact aaaaataagc gctaaagaac aagcaatttt gctttttaga ctttcacaaa
      721 atagcttacc tttttctcaa gaagcaatga atagtgttaa ggaaatgatt tatttaaaaa
      781 atatggaaaa tttagagctt tttggaaaaa caggttttaa tgatgagcaa aaaattgctt
      841 ggattgtagg ttttgtgtat ttaaaagatg aaaataaata taaggctttc gcgctaaatt
      901 tagatattga taaatttgaa gatttatata aaagagaaaa aattttagaa aaatatttag
      961 atgaacttgt aaaaaaagtt aaaaatgatg gctagtgagt atttcgtaaa atgcaaaaat
     1021 acttaattgt atgatttgcg tacacttaaa gtactcatta aaaaattaaa tttttgctct
     1081 tatttatcaa gttttcctac gatgataggg ttaaaggctt ttatggatag caaaagcgta
     1141 tcgccgattt ttacatcttg ataagctttt agaaattcct cttcactaag agtgatttta
     1201 ataatatctt gatttaaaag caaggttaaa accactaaaa tatcactttt tttaatttct
     1261 agcaaagttg cacttaagcg taattttgcg ctgatatttg aatgagtaaa aaattcattt
     1321 ttaggaaaat ctttaataat ttttccgttt ttaagctcta aaattctatg acttaactta
     1381 taaatttcag ctagatcatg acttaccaat aaagtactta ttttaaaata ctctaaaatc
     1441 ttggttaatt catcttgtaa attggcacgc attttaaaat ccaaagcact caaaggttca
     1501 tctaaaagca agatttttgg ttctcttgct aaagctcttg ctaaagctac tctttgtgcc
     1561 tgccccccac ttaaatgttt aggataaatt ttagctaaat tttcaagctt cattaaggct
     1621 aaaagctcgc taacctttgc tttagaacta gcggcatagg cgatgttttc ttttatattc
     1681 atatttggaa aaagcgcata atcttgaaaa acaaaaccaa tttttctttt ttgtaaagct
     1741 aaactaaaat tttttgaaga atcaaaccaa agttcattat ctacttctat acgccccaat
     1801 ttaggcttta taagtcccgc tatgattttt aaaagagtgg tttttcctgc tccactttcg
     1861 ccaaaaagtg cagtaatttt tcctgattct atatcttttt taaaatttaa atccagtctt
     1921 cctttagcgg tattcatagg atgattgata tcaattctta tcattgaaaa c
//
